LOCUS NC_011988 1283187 bp DNA circular BCT 31-DEC-2012
DEFINITION Agrobacterium vitis S4 chromosome 2, complete sequence.
ACCESSION NC_011988
VERSION NC_011988.1 GI:222106127
DBLINK Project: 58249
BioProject: PRJNA58249
KEYWORDS .
SOURCE Agrobacterium vitis S4
ORGANISM Agrobacterium vitis S4
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.
REFERENCE 1 (bases 1 to 1283187)
AUTHORS Slater,S.C., Goldman,B.S., Goodner,B., Setubal,J.C., Farrand,S.K.,
Nester,E.W., Burr,T.J., Banta,L., Dickerman,A.W., Paulsen,I.,
Otten,L., Suen,G., Welch,R., Almeida,N.F., Arnold,F., Burton,O.T.,
Du,Z., Ewing,A., Godsy,E., Heisel,S., Houmiel,K.L., Jhaveri,J.,
Lu,J., Miller,N.M., Norton,S., Chen,Q., Phoolcharoen,W., Ohlin,V.,
Ondrusek,D., Pride,N., Stricklin,S.L., Sun,J., Wheeler,C.,
Wilson,L., Zhu,H. and Wood,D.W.
TITLE Genome sequences of three agrobacterium biovars help elucidate the
evolution of multichromosome genomes in bacteria
JOURNAL J. Bacteriol. 191 (8), 2501-2511 (2009)
PUBMED 19251847
REFERENCE 2 (bases 1 to 1283187)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (28-JAN-2009) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1283187)
AUTHORS Setubal,J., Wood,D., Slater,S., Nester,E., Farrand,S., Goldman,B.,
Burr,T., Goodner,B., Otten,L., Dickerman,A., Almeida,N., Sun,J.,
Jhaveri,J., Banta,L. and Houmiel,K.
CONSRTM Agrobacterium Consortium
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2007) Virginia Bioinformatics Institute, Virginia
Tech, Washington Street, Box 0477, Blacksburg, VA 24061, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000634.
Strain/DNA available from Tom Burr, Cornell University,
tjb1@cornell.edu. A. vitis S4 was isolated by Dr. Erno Szegedi in
1981 from aerial gall that developed on a two-year-old woody
grapevine cane.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..1283187
/organism="Agrobacterium vitis S4"
/mol_type="genomic DNA"
/strain="S4; ATCC BAA-846"
/isolate="Kecskemet-Hungary"
/host="Vitis vinifera cv. 'Izsaki Sarfeher'"
/culture_collection="ATCC:BAA-846"
/db_xref="taxon:311402"
/chromosome="2"
/country="Hungary: Orgovany"
gene 287..1549
/gene="repA"
/locus_tag="Avi_5000"
/db_xref="GeneID:7381168"
CDS 287..1549
/gene="repA"
/locus_tag="Avi_5000"
/codon_start=1
/transl_table=11
/product="replication protein A"
/protein_id="YP_002546919.1"
/db_xref="GI:222106128"
/db_xref="GeneID:7381168"
/translation="MIMAVASSTATEQQETNLRPADETIAEDARALSAQLKAMRERLF
APSSRKTLRTFTSGEAARLVGVSDGYLRQLSLAGEGPAPVVGAGGRRYYSLSDIDALR
HYLAEQAMIKGNVSKARSYVKWRDAERGEHLQIISVTNFKGGSGKTTSAVHLAQYLAM
TGHRVLAVDLDPQASLSALFGYQPELDLVGNDTIYGAIRYDDEVRPLREIIRKTYFHN
LDLLPGNLELQEFEHVTPRALAERKTGDAKSLFFARVQNALHSVADDYDVVVIDCPPQ
LGYLTLSALCASTSVIVTVHPQMLDVASMSQFLFMTSDLLGVVREAGGTLNFDFLRYL
VTRFEPNDGPQAQIVGFLRSLFGERVLTSPMVKSTAISDAGLTKQTLYEVGRENFSRG
TYDRAIEALESVNAEIEQLIHTAWGRKE"
misc_feature 350..1540
/gene="repA"
/locus_tag="Avi_5000"
/note="plasmid partitioning protein RepA; Region:
partition_RepA; TIGR03453"
/db_xref="CDD:211820"
misc_feature 689..>805
/gene="repA"
/locus_tag="Avi_5000"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature 710..730
/gene="repA"
/locus_tag="Avi_5000"
/note="P-loop; other site"
/db_xref="CDD:73302"
misc_feature 728..730
/gene="repA"
/locus_tag="Avi_5000"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
misc_feature <1082..1294
/gene="repA"
/locus_tag="Avi_5000"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature 1100..1102
/gene="repA"
/locus_tag="Avi_5000"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
gene 1546..2628
/gene="repB"
/locus_tag="Avi_5001"
/db_xref="GeneID:7381169"
CDS 1546..2628
/gene="repB"
/locus_tag="Avi_5001"
/codon_start=1
/transl_table=11
/product="replication protein B"
/protein_id="YP_002546920.1"
/db_xref="GI:222106129"
/db_xref="GeneID:7381169"
/translation="MIGKNRKSELRALFSDPGSGASSETAEPSVSQPTASGEPRRADT
VEEQPPAAPVARAASGAIKAMGLTLSSITREAEEARALRQAIDEGERVISLATDKIDA
SFVSDRLSDEERDDPDFIALVSSMRESGQQVPILVRRHPLNDDRYQVAYGHRRLSAAK
RLGIAVKALIRPLSDDELVLAQGKENAERRNLTFIERALFAKALADRGFDRKVIGEAL
SVQKSELSRLIQVAESVPERFARAVGPAPKAGRERWMALGQLLSSEQGQLKAAGLVST
DGFRIAATDERFQKLFDTLSGKAPVERPEPEDIRGPDGRVFARIGRQGRRLKIEFLAE
ANPGFVDQFETRLAAAYAAYLDGEHD"
misc_feature 1822..2103
/gene="repB"
/locus_tag="Avi_5001"
/note="ParB-like nuclease domain; Region: ParB;
smart00470"
/db_xref="CDD:197744"
misc_feature 2110..2616
/gene="repB"
/locus_tag="Avi_5001"
/note="RepB plasmid partitioning protein; Region: RepB;
pfam07506"
/db_xref="CDD:148871"
gene 3579..4796
/gene="repC"
/locus_tag="Avi_5002"
/db_xref="GeneID:7381170"
CDS 3579..4796
/gene="repC"
/locus_tag="Avi_5002"
/codon_start=1
/transl_table=11
/product="replication initiation protein RepC"
/protein_id="YP_002546921.1"
/db_xref="GI:222106130"
/db_xref="GeneID:7381170"
/translation="MERAATTPFGGGRMSGRVLARQARIGERQAALRQSEGANSSGRA
DKWQLLRALTEARAVYGLGDRTICLLEALVSFTTERELDGREPVIVFPSNRELAFRAR
GMAPATIRRHLACLVDAGMIFRRDSANGKRYCRRDETGEVEDAFGFDLAPFVLKAEEI
YSAAESARAEAKQFRALRGEVTVLSRDISKIITLALEEGRAGDWESYLLCYQSFCKTR
TRMKFSSDMQIFAQELRALLSKVENDYLSSLSEEEMSGNDRQNERHQQNSKSDLQFDR
NGNDHKTAEPVSPPLDQRRLAVSLKRLKTLCPQINDYAKDGISEWSDLIRAADTVRTM
LGISPDAWLKAKQAMGEQAAAITVAVMLERAEAIRSAGGYLRTLTDKAEQGQFSVYPM
LQALEKNLPRSKS"
misc_feature 3579..4775
/gene="repC"
/locus_tag="Avi_5002"
/note="replication initiation protein RepC; Provisional;
Region: PRK13824"
/db_xref="CDD:184349"
misc_feature 3666..4172
/gene="repC"
/locus_tag="Avi_5002"
/note="Replication protein C N-terminal domain; Region:
RP-C; pfam03428"
/db_xref="CDD:146192"
misc_feature 4182..4766
/gene="repC"
/locus_tag="Avi_5002"
/note="Replication protein C C-terminal region; Region:
RP-C_C; pfam11800"
/db_xref="CDD:152236"
gene 5079..6632
/locus_tag="Avi_5003"
/db_xref="GeneID:7381171"
CDS 5079..6632
/locus_tag="Avi_5003"
/codon_start=1
/transl_table=11
/product="phospholipase/phosphatidylserine synthase"
/protein_id="YP_002546922.1"
/db_xref="GI:222106131"
/db_xref="GeneID:7381171"
/translation="MQGFEKASSHHRIGSDQVIRVGYNAWKTGVASKAGFLIDGAQYF
RALADSLSRAQEQIFIIGWDFNPDIQLIPEDQASPTLGEFLISLVENNSRLAIHILVW
AMGPIYSGKSLRMLGNTELKSHPRIDLRLDTRHAVRGSHHQKMVVIDDALAFIGGIDL
TAKRWDTPEHRADQPLRCTPKGERYEPVHDVQMAVDGEAAEVAAEIARRRWWQATGED
LVRPRCYSHSFPPAARYVFSNCDIAFARTEPAIRRSTSVRETLQLTLDCLSRAEKLIY
IESQYFASKDVADLLASRLSEPDGPEVVLISTLNSHGFLERKVLGENRDRMIRKLRQA
DRFGRFRAFYPVVPDESRDTKCEEVLVHAKLIIVDDVFIRVGSSNLNQRSVGLDTELD
VAIEMHSDKERQILADMRNGLLGEHLGLPSTELAKAHQEAGSLVRALDRVNVGLRGLR
SFPVGDENGKTGLHFATGLVDPKAPWWPLQLVSIPFSMLKKIRRMAMSKAGLSQADGQ
QQRISANNS"
misc_feature 5169..6266
/locus_tag="Avi_5003"
/note="Phosphatidylserine/phosphatidylglycerophosphate/car
diolipin synthases and related enzymes [Lipid metabolism];
Region: Cls; COG1502"
/db_xref="CDD:31691"
misc_feature 5178..5603
/locus_tag="Avi_5003"
/note="Catalytic domain, repeat 1, of uncharacterized
bacterial proteins with similarity to vertebrate
phospholipases, PLD1 and PLD2; Region:
PLDc_vPLD1_2_like_bac_1; cd09140"
/db_xref="CDD:197238"
misc_feature order(5502..5504,5508..5510,5547..5549,5553..5555,
5586..5588)
/locus_tag="Avi_5003"
/note="putative active site [active]"
/db_xref="CDD:197238"
misc_feature 5502..5504
/locus_tag="Avi_5003"
/note="catalytic site [active]"
/db_xref="CDD:197238"
misc_feature 5832..6266
/locus_tag="Avi_5003"
/note="Catalytic domain, repeat 2, of uncharacterized
bacterial proteins with similarity to vertebrate
phospholipases, PLD1 and PLD2; Region:
PLDc_vPLD1_2_like_bac_2; cd09143"
/db_xref="CDD:197241"
misc_feature <6162..6509
/locus_tag="Avi_5003"
/note="Catalytic domain of phospholipase D superfamily
proteins; Region: PLDc_SF; cl15239"
/db_xref="CDD:210050"
misc_feature order(6162..6164,6168..6170,6207..6209,6213..6215,
6246..6248)
/locus_tag="Avi_5003"
/note="putative active site [active]"
/db_xref="CDD:197241"
misc_feature order(6162..6164,6168..6170,6207..6209,6213..6215,
6246..6248)
/locus_tag="Avi_5003"
/note="putative active site [active]"
/db_xref="CDD:197200"
misc_feature 6162..6164
/locus_tag="Avi_5003"
/note="catalytic site [active]"
/db_xref="CDD:197241"
misc_feature 6162..6164
/locus_tag="Avi_5003"
/note="catalytic site [active]"
/db_xref="CDD:197200"
gene complement(6736..7689)
/locus_tag="Avi_5004"
/db_xref="GeneID:7381172"
CDS complement(6736..7689)
/locus_tag="Avi_5004"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546923.1"
/db_xref="GI:222106132"
/db_xref="GeneID:7381172"
/translation="MQKKILLNGIFLAATAIALWLSYRALSKFSLNDIEMSLSAIPWT
GFALSLFFCAVSYLCLTGFDYLGILYAGSRLSWRKAAVASFVSLSIGHNVGLAALSSG
AVRYRYYRRWGLKNEEVAKIILFCGATVGIGLIGLAGICLALFPQSAAKLGGMGSFAA
RLIGFACLAAIGIYLVASAWLRGEIRIYKWRFSLPTLPIALAQVAVGIANFAAVAACL
FWLARSSAGFFETTTAYVMANLSALVAHVPGGLGVMEATISFIMGKDASIGALIAFRV
VYFFIPLAIGIPVFAISEWYYSRRERRNNSSSNETVKAATL"
misc_feature complement(6805..7680)
/locus_tag="Avi_5004"
/note="Predicted integral membrane protein [Function
unknown]; Region: COG0392"
/db_xref="CDD:30741"
gene 7754..8491
/locus_tag="Avi_5005"
/db_xref="GeneID:7381173"
CDS 7754..8491
/locus_tag="Avi_5005"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546924.1"
/db_xref="GI:222106133"
/db_xref="GeneID:7381173"
/translation="MSSIFRLLTYNIHSCIGTDRRLDPARIAEVIVATEADIVCLQEV
DVGRNRTSGIDQADVIAGYLTMQSHFHSALNVAEERYGDALLTRFPTRIVQQGMLPSR
GEQRGALLVEVSIGQIAVNVCVTHFGLRAGERAEQARALLGVEWLGPLLEADAPIVVA
ADLNAVSNSKAFKLLTARLADATKANLKSDSLSRSKPTFPSRFPFLRLDHVLISGGLN
ILEARVIDTPLARRASDHLPLLVTMQI"
misc_feature 7763..8488
/locus_tag="Avi_5005"
/note="Exonuclease-Endonuclease-Phosphatase (EEP) domain
superfamily; Region: EEP; cl00490"
/db_xref="CDD:207076"
misc_feature order(7784..7786,7880..7882,8129..8131,8237..8239,
8243..8245,8378..8380,8456..8461)
/locus_tag="Avi_5005"
/note="putative catalytic site [active]"
/db_xref="CDD:197306"
misc_feature order(7880..7882,8456..8458)
/locus_tag="Avi_5005"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197306"
misc_feature order(8129..8131,8243..8245,8459..8461)
/locus_tag="Avi_5005"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197306"
gene complement(8635..9459)
/locus_tag="Avi_5006"
/db_xref="GeneID:7381174"
CDS complement(8635..9459)
/locus_tag="Avi_5006"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546925.1"
/db_xref="GI:222106134"
/db_xref="GeneID:7381174"
/translation="MTQNSYFTNYGGLPPQTQLLSGKAVFKTAYAVIPKGVMSDIVTS
LLPHWEKTRAWIIARPMTGFSETFSQYVMEVQPGGGSIRPEPDAQAQTAIFVVEGAFR
LTLGTTEHDLRAGSFAFLPAGSTWTVLNTSDAPAKFHWVRKTFQAVDGLEPPPAIFTH
EDEHEIAMMPDTGGAWGTTRFIDPNDIRYDFHLNIVSFQPGGIIPFMETHVMEHGLYV
LEGKAVYRLNDDWVEVEAGDFMWLRAFCPQACYAGGPGRFRYLLYKDVNRHARLWP"
misc_feature complement(8641..9447)
/locus_tag="Avi_5006"
/note="hypothetical protein; Provisional; Region:
PRK11171"
/db_xref="CDD:183011"
misc_feature complement(9037..9249)
/locus_tag="Avi_5006"
/note="Cupin domain; Region: Cupin_2; pfam07883"
/db_xref="CDD:203791"
misc_feature complement(8677..8880)
/locus_tag="Avi_5006"
/note="Cupin domain; Region: Cupin_2; pfam07883"
/db_xref="CDD:203791"
gene 9913..10218
/locus_tag="Avi_5007"
/db_xref="GeneID:7381175"
CDS 9913..10218
/locus_tag="Avi_5007"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546926.1"
/db_xref="GI:222106135"
/db_xref="GeneID:7381175"
/translation="MFTEIFATLISFFMIDPIEADLRSRLASMNSSASTIEQAQTCVR
DSAPKLLQQALGDPSWAVASGLRISFGWTTPVAVVSEISPECRTAFSLLGSETGGDV"
gene 10581..11219
/gene="exoD"
/locus_tag="Avi_5009"
/db_xref="GeneID:7381176"
CDS 10581..11219
/gene="exoD"
/locus_tag="Avi_5009"
/codon_start=1
/transl_table=11
/product="exoD protein"
/protein_id="YP_002546927.1"
/db_xref="GI:222106136"
/db_xref="GeneID:7381176"
/translation="MMMMSRQHGPAAGDDIVRGSGFLLEVLETARLRGGISIGELIGR
RGRIGIAFTLLVLCLPTLVPLPGPFGMVFGTCLAFVAVQMLYGADRIWLPGFIARRTV
SLKVVETMVRLGRPWVLKLESWLIAGRLPFLTGKTARMILALPILVLAVLISLPIPFG
NTAPALAIILIAIALAERDGLVVIFSLFVAAGAGVVTYYLVTAAGNLLTWAF"
misc_feature <10785..11183
/gene="exoD"
/locus_tag="Avi_5009"
/note="Exopolysaccharide synthesis, ExoD; Region: ExoD;
pfam06055"
/db_xref="CDD:147944"
gene complement(11250..11717)
/locus_tag="Avi_5010"
/db_xref="GeneID:7381177"
CDS complement(11250..11717)
/locus_tag="Avi_5010"
/codon_start=1
/transl_table=11
/product="transcriptional regulator AsnC family"
/protein_id="YP_002546928.1"
/db_xref="GI:222106137"
/db_xref="GeneID:7381177"
/translation="MDDLDRFDRQIIDIIQRNCQLKAEIIAEQIGLSLSAVQRRLKRL
REEGIIKSEVAVVDRKITGHPMVFIVGMEIERDNYDALARFRTWSERQDHIQQVYYVT
GQVDLIAIVTARDVEHYDDIAALIMAENPQIRRMHTNVVLRDIKLGLFVPMAK"
misc_feature complement(11259..11666)
/locus_tag="Avi_5010"
/note="Transcriptional regulators [Transcription]; Region:
Lrp; COG1522"
/db_xref="CDD:31711"
misc_feature complement(11565..>11642)
/locus_tag="Avi_5010"
/note="Winged helix-turn-helix DNA-binding; Region:
HTH_24; pfam13412"
/db_xref="CDD:205590"
misc_feature complement(order(11559..11564,11580..11585,11589..11594,
11601..11606,11610..11621))
/locus_tag="Avi_5010"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature complement(11289..11504)
/locus_tag="Avi_5010"
/note="AsnC family; Region: AsnC_trans_reg; pfam01037"
/db_xref="CDD:189815"
gene 11880..12659
/gene="nocP1"
/locus_tag="Avi_5012"
/db_xref="GeneID:7381178"
CDS 11880..12659
/gene="nocP1"
/locus_tag="Avi_5012"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002546929.1"
/db_xref="GI:222106138"
/db_xref="GeneID:7381178"
/translation="MIDGSGFALEVEDIHKSFGAHAVLKGLSVRAAKGDVISIIGSSG
SGKSTFLRCINFLEMPDRGRIVVNGEEVAIKLGRRGEPKPASWRQVERLRTGLGMVFQ
NFNLWAHRTVLENVIEAPVHVMGVKRAEAIERAESLLHKVGLYDKRDAYPAFLSGGQQ
QRAAIARALCVEPAVMLFDEPTSALDPELVGEVLKVIRDLAEEGRTMLLVTHEMRFAR
DVSSHVLFLHQGRVEEQGPPEQVFGNPLSDRCREFTGGIGA"
misc_feature 11886..12653
/gene="nocP1"
/locus_tag="Avi_5012"
/note="ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism]; Region:
HisP; COG4598"
/db_xref="CDD:34233"
misc_feature 11904..12575
/gene="nocP1"
/locus_tag="Avi_5012"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 12000..12023
/gene="nocP1"
/locus_tag="Avi_5012"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(12009..12014,12018..12026,12183..12185,12414..12419,
12513..12515)
/gene="nocP1"
/locus_tag="Avi_5012"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 12174..12185
/gene="nocP1"
/locus_tag="Avi_5012"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 12342..12371
/gene="nocP1"
/locus_tag="Avi_5012"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 12402..12419
/gene="nocP1"
/locus_tag="Avi_5012"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 12426..12437
/gene="nocP1"
/locus_tag="Avi_5012"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 12501..12521
/gene="nocP1"
/locus_tag="Avi_5012"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 12704..13474
/locus_tag="Avi_5014"
/db_xref="GeneID:7381179"
CDS 12704..13474
/locus_tag="Avi_5014"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter substrate-binding
protein"
/protein_id="YP_002546930.1"
/db_xref="GI:222106139"
/db_xref="GeneID:7381179"
/translation="MKFFPLLLAGAAFAFSAFSAQADVRFGVMNESYPPFFAKDASGK
WQGWEIDLMDAVCAEMKEKCSIVELSWDGLIPALGAKKFDVIWSSMSITDERKKVIDF
TDKYYNTPSRLIGAKDMKPGASADDVKGKTIGIQVSTIQSEYYKKYFAKVASEKTYQT
LDEAFQDLAAGRIDYVFGDSIVLDTFVKSDAGKDCCANMGDVAADAAVLGSGVGGGLR
KDDTALKAKLNAALAAVRASGKYDEITKKYFDFDIYGK"
misc_feature 12773..13450
/locus_tag="Avi_5014"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature 12797..13450
/locus_tag="Avi_5014"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature order(12800..12802,12914..12916,12989..12991,13121..13123,
13238..13240)
/locus_tag="Avi_5014"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature order(13187..13189,13199..13201,13217..13219)
/locus_tag="Avi_5014"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature 13328..13345
/locus_tag="Avi_5014"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene 13491..14213
/locus_tag="Avi_5015"
/db_xref="GeneID:7381180"
CDS 13491..14213
/locus_tag="Avi_5015"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002546931.1"
/db_xref="GI:222106140"
/db_xref="GeneID:7381180"
/translation="MAVSPGILDLLSPYPPGWGGTLLWGAGATLTISAGAFLIGLVIG
IGGALGKLSGNRLLLGLLDVYTTAVRAVPELILIVGLYYAGTDGLNRLLQAFGMPVVE
VNGLIAAIAVLGVVQGAYMTEVLRGAILAIPIGQSEAAKAFGMSPFLRFHRVTLPALL
PNALPGLANLWMAVTKDSALVAVVGYQELALATRLAGASTKHYFLFFLAAALLYLAIT
LVSNLFFKLIERRVRRGQPLLS"
misc_feature 13677..>14045
/locus_tag="Avi_5015"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(13677..13685,13689..13718,13725..13730,13734..13736,
13833..13838,13842..13844,13848..13850,13857..13862,
13866..13868,13878..13883,13890..13892,13941..13943,
13983..13988,13995..13997,14016..14027,14034..14039)
/locus_tag="Avi_5015"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(13692..13736,14016..14033)
/locus_tag="Avi_5015"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(13734..13736,13818..13820,14034..14036)
/locus_tag="Avi_5015"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(13893..13931,13947..13952,13962..13964)
/locus_tag="Avi_5015"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 14222..14911
/locus_tag="Avi_5016"
/db_xref="GeneID:7381181"
CDS 14222..14911
/locus_tag="Avi_5016"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002546932.1"
/db_xref="GI:222106141"
/db_xref="GeneID:7381181"
/translation="MDFSWIGNYWPLLLTGAWQTLALLVISVVLGFVMAIGLAFAQVS
GGPVTRVLARGYSTFFRGTPLLIQLWLLYYGVGSLLPMIPGIRQSLIWPLLREGFFFA
AVSFTLNYAAYEAEVLRGALLAVPKGELEAGRAFGMGRFTLIRRVWLPRAIRIALPTI
AGEVVMQLKATPLAFTVTVMDLYAVAYKVRQDTLLVYEPLIVVTLFYLAITAIIARCF
RMVEAQVPIRR"
misc_feature 14237..14890
/locus_tag="Avi_5016"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature 14270..14863
/locus_tag="Avi_5016"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(14318..14323,14330..14335,14348..14350,14378..14389,
14393..14422,14429..14434,14438..14440,14543..14548,
14552..14554,14558..14560,14567..14572,14576..14578,
14588..14593,14600..14602,14651..14653,14693..14698,
14705..14707,14726..14737,14744..14749,14786..14791,
14819..14824,14831..14836,14840..14845,14852..14857)
/locus_tag="Avi_5016"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(14396..14440,14726..14743)
/locus_tag="Avi_5016"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(14438..14440,14528..14530,14744..14746,14780..14782,
14789..14791,14819..14821)
/locus_tag="Avi_5016"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(14603..14641,14657..14662,14672..14674)
/locus_tag="Avi_5016"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 14929..15834
/locus_tag="Avi_5017"
/db_xref="GeneID:7381182"
CDS 14929..15834
/locus_tag="Avi_5017"
/codon_start=1
/transl_table=11
/product="S-methyltransferase"
/protein_id="YP_002546933.1"
/db_xref="GI:222106142"
/db_xref="GeneID:7381182"
/translation="MTKVRILDGGMSRELLRLGAELKQPEWSALALINAPDIVRQVHA
EFIAAGADVVTTNSYALVPFHIGEERFQSEGPSLIALSGELARQAADASGRKVLVAGS
LPPIFGSYEPQNFDPSTVDAYLDVLVANLAPFVDVWLGETLSLIAEGEAVQKAVAATG
KPFWISFTLADEAGQDIGGSPKLRSGELVQDAALWAAGSGASALLFNCSKPEVMKAAV
DVAAATFRQKGVSLDIGVYANAFEGEQGEAAANEGLHETRADLTDDAYCRFACDWADA
GATMIGGCCGIGAAHIHQLSKALSA"
misc_feature 14929..15825
/locus_tag="Avi_5017"
/note="Homocysteine/selenocysteine methylase
(S-methylmethionine-dependent) [Amino acid transport and
metabolism]; Region: MHT1; COG2040"
/db_xref="CDD:32223"
misc_feature 14935..>15597
/locus_tag="Avi_5017"
/note="Methionine synthase I (cobalamin-dependent),
methyltransferase domain [Amino acid transport and
metabolism]; Region: MetH; cl14105"
/db_xref="CDD:213130"
gene complement(15844..16827)
/locus_tag="Avi_5018"
/db_xref="GeneID:7381183"
CDS complement(15844..16827)
/locus_tag="Avi_5018"
/codon_start=1
/transl_table=11
/product="Fe3+ ABC transporter permease"
/protein_id="YP_002546934.1"
/db_xref="GI:222106143"
/db_xref="GeneID:7381183"
/translation="MTIIVVVSAGISLGAAPIPVATVWKILANHLVPGSFAVDWPAGR
VSIVWDVRFPRVLLGGLVGAGLALTGAVLQPATRNPLADPHLLGVSSGAAFGAILALL
HTGMVFGLLTVPLFAFGGALLATATVGLVAGLTRSLQADRLVLSGVIVGFFFTGLGNL
LVFLGDPRATQTVTFWMLGGLGLAQWQHLIYPAAVLAAGLCYLLPNARLLNALAMGDE
TAATLGVPVARFRMMLFVISALITGTMVAFSGAIGFVGLMVPHMVRALAGSDNVRVLP
LSALTGALVLILADLVARLAVAPEDMPIGIVTGLAGCLAFLWIMRKTRSGA"
misc_feature complement(15856..>16731)
/locus_tag="Avi_5018"
/note="iron-hydroxamate transporter permease subunit;
Provisional; Region: PRK10577"
/db_xref="CDD:182563"
misc_feature complement(15868..16599)
/locus_tag="Avi_5018"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cd06550"
/db_xref="CDD:119348"
misc_feature complement(order(16015..16017,16036..16038,16159..16167,
16171..16188,16192..16197,16201..16209,16213..16218,
16588..16596))
/locus_tag="Avi_5018"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119348"
misc_feature complement(order(15868..15870,15877..15882,15889..15891,
15898..15903,15910..15912,16066..16068,16294..16296,
16303..16308,16342..16344,16348..16353,16360..16362,
16369..16374,16381..16386,16393..16398,16402..16404,
16570..16572,16585..16587,16591..16593))
/locus_tag="Avi_5018"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119348"
misc_feature complement(order(15919..15921,15946..15948,16078..16080,
16090..16092,16264..16266,16342..16344))
/locus_tag="Avi_5018"
/note="putative PBP binding regions; other site"
/db_xref="CDD:119348"
gene complement(16873..17832)
/locus_tag="Avi_5019"
/db_xref="GeneID:7381184"
CDS complement(16873..17832)
/locus_tag="Avi_5019"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(iron)"
/protein_id="YP_002546935.1"
/db_xref="GI:222106144"
/db_xref="GeneID:7381184"
/translation="MKNALLIFTLSTFLAAVSLTAATAEPVTVKSCNRQVTFDTAPQR
AVSNDVNLTEMMLALKLQDHMVGYTGVSGWKTLDEKLREGVSQLPELSPKYPSKEVLL
NANADFYFAGWNYGMKVGGEVTPDTLSPLGIKVYELTESCIHIMAKAKPTMDDMFIDL
INLGRIFRVEDRAEALVAGYRQQLAKIQAKISPTDKPATVFVYDSGEQKPFTSGRFGI
PTAMIEAAGGVNIMDDVQKSWTEVSWEPVIERNPQVIIIVNYGEVTAQQKIDYMKHNP
AFQNIDAVKNDRFVVLDYVEATPGPRNVDAIARLAQAFHPQSL"
misc_feature complement(16894..17757)
/locus_tag="Avi_5019"
/note="proposed F420-0 ABC transporter, periplasmic F420-0
binding protein; Region: F420-O_ABCperi; TIGR03868"
/db_xref="CDD:163580"
misc_feature complement(16900..17757)
/locus_tag="Avi_5019"
/note="Metal binding protein TroA_a. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions in eubacteria. They belong to the
TroA superfamily of helical backbone metal receptor
proteins that share a distinct fold and...; Region:
TroA_a; cd01148"
/db_xref="CDD:29751"
misc_feature complement(17590..17592)
/locus_tag="Avi_5019"
/note="putative ligand binding residues [chemical
binding]; other site"
/db_xref="CDD:29751"
gene complement(17855..19009)
/locus_tag="Avi_5021"
/db_xref="GeneID:7381185"
CDS complement(17855..19009)
/locus_tag="Avi_5021"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(iron)"
/protein_id="YP_002546936.1"
/db_xref="GI:222106145"
/db_xref="GeneID:7381185"
/translation="MSVIDPNGAVALQRRLRLKREYGEAYPTGTETVAAPATVSGEWA
CTMPLAISREGAGQQRPASQETCHLDVQPQRTGCSDGSDKTSGPPRGVAIRSLFRRSG
PRRGTPDVRSTDAGSCMSCDGHGASLEVRGLSYGPTGARSLIKNIDFTLTAGERLAIL
GPNGAGKTTLLRCLYRAVRPGEGRVLLDGQDVWTIDPRTVARRIAVVVQEMPADFPFT
VEDIVMMGRIPWQKRAWKRSQSTGDDKARALHAMDHLHVTDLARRDFATLSGGEKQRV
LVARALAQDPQLLILDEPSNHLDIRNQLEILDLLRGLGITIVTTLHDINLAAGFATRA
IILKDGQMIAEGCPRDVLTADHLSAAFTVQTHVHSLDGGATRNFSFALSA"
misc_feature complement(17885..18634)
/locus_tag="Avi_5021"
/note="ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism]; Region: FepC; COG1120"
/db_xref="CDD:31317"
misc_feature complement(17972..18625)
/locus_tag="Avi_5021"
/note="ABC transporters, involved in the uptake of
siderophores, heme, and vitamin B12, are widely conserved
in bacteria and archaea. Only very few species lack
representatives of the siderophore family transporters.
The E. coli BtuCD protein is an ABC...; Region:
ABC_Iron-Siderophores_B12_Hemin; cd03214"
/db_xref="CDD:72973"
misc_feature complement(18506..18529)
/locus_tag="Avi_5021"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(order(18044..18046,18131..18136,18383..18385,
18503..18511,18515..18520))
/locus_tag="Avi_5021"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72973"
misc_feature complement(18383..18394)
/locus_tag="Avi_5021"
/note="Q-loop/lid; other site"
/db_xref="CDD:72973"
misc_feature complement(18179..18208)
/locus_tag="Avi_5021"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72973"
misc_feature complement(18131..18148)
/locus_tag="Avi_5021"
/note="Walker B; other site"
/db_xref="CDD:72973"
misc_feature complement(18113..18124)
/locus_tag="Avi_5021"
/note="D-loop; other site"
/db_xref="CDD:72973"
misc_feature complement(18038..18058)
/locus_tag="Avi_5021"
/note="H-loop/switch region; other site"
/db_xref="CDD:72973"
misc_binding complement(18790..19006)
/locus_tag="Avi_5021"
/note="cobalamin riboswitch; predicted by Infernal"
/bound_moiety="adenosylcobalamin"
gene complement(19201..20637)
/locus_tag="Avi_5022"
/db_xref="GeneID:7381186"
CDS complement(19201..20637)
/locus_tag="Avi_5022"
/codon_start=1
/transl_table=11
/product="amidohydrolase"
/protein_id="YP_002546937.1"
/db_xref="GI:222106146"
/db_xref="GeneID:7381186"
/translation="MTVSPNTSAALWSIVDTKTPDFIALSDRIWGMPETCYMEESSVA
EHVAMLKAEGFRVSEQLAGIPTAVMGEAGEGGPIIAFLGEYDALSGLSQEAGVAEHKP
IAAGGNGHGCGHNLLGSAALLAAASLKDWLKEKDLPGRVRYYGCPAEEGGAAKAFMVR
AGAFEGVDIAISWHPNSFAGVQRTTSLANSRVDFTFRGRAAHAGSNPDLGRSALDAVE
LMSVGVNYMREHMPSDCRVHAAILDAGGISPNVVQAYAKVRYLIRAPELQGMKTLVER
VKKIGEGAALMTETRLETQVISAVSNVLTNGPLMAAMQEAWEELGPPPFDAADRAFAE
TIRAVLTPEEKSAPWRFEGLPERDIPLADFILPAHDRTPLLTGSTDVGDVSWVVPTVQ
ADGPTCAIGTPFHTWQLVTQGKSPLAHKGMVAAAKVMAATGRAAFESEQLREAARADL
VARRKGQPYQSPLPADAEPPIVEMGGRK"
misc_feature complement(19288..20595)
/locus_tag="Avi_5022"
/note="M20 Peptidase Aminoacylase 1-like protein 2
aminobenzoyl-glutamate utilization protein B subfamily;
Region: M20_Acy1L2_AbgB; cd05673"
/db_xref="CDD:193548"
misc_feature complement(19423..20571)
/locus_tag="Avi_5022"
/note="amidohydrolase; Region: amidohydrolases; TIGR01891"
/db_xref="CDD:162584"
misc_feature complement(order(19423..19425,20116..20118,20188..20190,
20296..20298,20302..20304))
/locus_tag="Avi_5022"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:193548"
gene complement(20772..21050)
/locus_tag="Avi_5023"
/db_xref="GeneID:7381187"
CDS complement(20772..21050)
/locus_tag="Avi_5023"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546938.1"
/db_xref="GI:222106147"
/db_xref="GeneID:7381187"
/translation="MTDATPETMRGRINAHRELLISLLTASLQGPEAFKDLIRSLEQE
SQLSDGQEDPGAVPNRALSEAVAKARETRDILQAAKARAADTRTEPLS"
gene complement(21047..22552)
/gene="glgA"
/locus_tag="Avi_5024"
/db_xref="GeneID:7381188"
CDS complement(21047..22552)
/gene="glgA"
/locus_tag="Avi_5024"
/codon_start=1
/transl_table=11
/product="glycogen synthase"
/protein_id="YP_002546939.1"
/db_xref="GI:222106148"
/db_xref="GeneID:7381188"
/translation="MQKGNVIDQSLRSLSVTSEIFPLVKTGGLGDVTGALPKALASFG
VATRTLIPGYSNVRRLIRDQPPLLVFEDLLGESAALYAASIHGLDLFILDAPQLFDRP
GGPYVDENGLDHADNWKRFAVLSLAAAEIAAGSLPGWVPDVVHTHDWQTALTSVYLRH
MDCTTPVVLTIHNLAFQGQFNAALLPSIGLPPSVMSTDCMEYYGDISYLKGGLMTSSM
ITAVSPTYAREILSPRFGMGLEGVLRQRKDKLRGIVNGIDPEIWNPATDPHLFSRFDQ
KTIGLKRLNKVDLQNQFGLDNDDGPLFAAITRITWQKGMDMLAEAASEIIDGGGKLIV
LGQGDRALEQALIETAQRFPGRMAVKIGYDEETAHRIHGGADSIIQPSRFEPCGLTQL
YALRYGCVPVVSRTGGLAETIIDANDAAMSAKAATGFQFDQITTDGLRHALRRALDAY
AVPRHWRRLQLQAMRAHYSWERSAEQYAALYNAVTHRRTPARTKPARSLHS"
misc_feature complement(21092..22522)
/gene="glgA"
/locus_tag="Avi_5024"
/note="glycogen synthase; Provisional; Region: glgA;
PRK00654"
/db_xref="CDD:179083"
misc_feature complement(21110..22513)
/gene="glgA"
/locus_tag="Avi_5024"
/note="This family is most closely related to the GT1
family of glycosyltransferases. Glycogen synthase
catalyzes the formation and elongation of the
alpha-1,4-glucose backbone using ADP-glucose, the second
and key step of glycogen biosynthesis. This family...;
Region: GT1_Glycogen_synthase_DULL1_like; cd03791"
/db_xref="CDD:99965"
misc_feature complement(order(21383..21385,21398..21400,21449..21451,
21464..21469,21629..21637,22469..22471,22478..22480))
/gene="glgA"
/locus_tag="Avi_5024"
/note="ADP-binding pocket [chemical binding]; other site"
/db_xref="CDD:99965"
misc_feature complement(order(21230..21232,21314..21316,21320..21325,
21338..21340,21869..21871))
/gene="glgA"
/locus_tag="Avi_5024"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99965"
gene complement(22624..22941)
/locus_tag="Avi_5025"
/db_xref="GeneID:7381189"
CDS complement(22624..22941)
/locus_tag="Avi_5025"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546940.1"
/db_xref="GI:222106149"
/db_xref="GeneID:7381189"
/translation="MKPSDKEWIEKRAYSLWEEEGKPHGKDDAHWQQAHREFYELSQS
AQKAKAGALKRASQAAKTQTAKAPTTKAQAAKTRQSPEAEMADAPQDPKPAAATKRKR
KII"
misc_feature complement(22828..22923)
/locus_tag="Avi_5025"
/note="Protein of unknown function (DUF2934); Region:
DUF2934; pfam11154"
/db_xref="CDD:204599"
gene 23186..23527
/locus_tag="Avi_5027"
/db_xref="GeneID:7381190"
CDS 23186..23527
/locus_tag="Avi_5027"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546941.1"
/db_xref="GI:222106150"
/db_xref="GeneID:7381190"
/translation="MELIGTLVHPEKGGRSGYNVEFVSDSGDVVSVQLRQSEERSLTR
ENAPEAARSLLEEISTKEVVEGGTRHADQAQRDESDRDLNDALEDTFPASDPVSMATS
STIGGTGNNDN"
gene complement(23627..24220)
/locus_tag="Avi_5028"
/db_xref="GeneID:7381191"
CDS complement(23627..24220)
/locus_tag="Avi_5028"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546942.1"
/db_xref="GI:222106151"
/db_xref="GeneID:7381191"
/translation="MRRTGNSRKREHIAVTTQAFADTDWLTQWQQHGTTGEEAIARFL
QLPALEVDDMIGMWVGQELATNHPIDGLMPPFGWHGKNFVSADEGHPLIMRDRFGFYP
LNPFFIPLRLLLASPRLFNNVVGRVAVRNLGRFFASGRPKARLRPVALGGTVSAAMIY
DEKPIIDHFRRIDDRRCLGLMEHRDFDRPFFFLLTRE"
misc_feature complement(23924..24100)
/locus_tag="Avi_5028"
/note="GXWXG protein; Region: GXWXG; pfam14231"
/db_xref="CDD:206399"
misc_feature complement(23633..23806)
/locus_tag="Avi_5028"
/note="Domain of unknown function (DUF4334); Region:
DUF4334; pfam14232"
/db_xref="CDD:206400"
gene 24625..25617
/locus_tag="Avi_5029"
/db_xref="GeneID:7381192"
CDS 24625..25617
/locus_tag="Avi_5029"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546943.1"
/db_xref="GI:222106152"
/db_xref="GeneID:7381192"
/translation="MTRFLPDKFTLMLVCTVALASVLPISGQPAVYFGWATKVAIAAL
FFLHGARLSRDVVIAGMLHWRLHLSILAVTFVIFPLLGLGLGFFVQGFLPSSLYLGIL
YICVLPSTVQSSIAFTSMAGGNVPAAICSASASNIFGMILTPLLCGLLLSAGGHGGIS
LDAVLQIFVQLLLPFIVGQLLQPFIGNWVRARKSLLSPIDRGSILMVVYAAFSEAVIE
GIWKHFSLADIGAVVVVDIVLLALALIITTFGSRLLGFSKEDEIAITFCGSKKSLASG
VPMASAIFAGQSIGAIVMPLMLFHQIQLMACAVIAQKYAEKRKLKEAEVVVASA"
misc_feature 24625..25611
/locus_tag="Avi_5029"
/note="Predicted Na+-dependent transporter [General
function prediction only]; Region: COG0385"
/db_xref="CDD:30734"
misc_feature 24643..25569
/locus_tag="Avi_5029"
/note="SBF-like CPA transporter family (DUF4137); Region:
DUF4137; pfam13593"
/db_xref="CDD:205771"
gene complement(25671..26702)
/locus_tag="Avi_5030"
/db_xref="GeneID:7381193"
CDS complement(25671..26702)
/locus_tag="Avi_5030"
/codon_start=1
/transl_table=11
/product="zinc-binding dehydrogenase"
/protein_id="YP_002546944.1"
/db_xref="GI:222106153"
/db_xref="GeneID:7381193"
/translation="MKAIVAHAAKDVRIEEVDEVEPGHGEVKLRLATGGICGSDLHYY
NHGGFGAVRLKQPMILGHEVSAYVETLGAGVTGLDIGQLVAVSPSRPCHKCAYCQEGL
HNQCINMRFYGSAMPFPHIQGAFRQSLVADASQCVVADGLTAGEAAMAEPLAVTLHAT
RRAGEMLGKRVLVTGCGPIGVLSIIAARGAGAKEIVATDLSDFTLALAKAAGADRVIN
TAAQPDGLAEYAVGKGTFDVLYECTGVASALAGGISAMRPRGVIMQLGLGGDMTLPMM
AITAKELDLRGSFRFHSEFAVGVELMRKGLIDVKPLITHTVPLEDALSAFTIASDRSK
AMKAQIAFS"
misc_feature complement(25677..26696)
/locus_tag="Avi_5030"
/note="L-idonate 5-dehydrogenase; Provisional; Region:
PRK09880"
/db_xref="CDD:182130"
misc_feature complement(25677..26693)
/locus_tag="Avi_5030"
/note="L-idonate 5-dehydrogenase; Region: idonate-5-DH;
cd08232"
/db_xref="CDD:176194"
misc_feature complement(order(25833..25841,25905..25910,25968..25970,
25974..25979,26046..26048,26091..26093,26103..26108,
26163..26180,26238..26240,26250..26252,26577..26579,
26586..26594))
/locus_tag="Avi_5030"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:176194"
misc_feature complement(order(26250..26252,26517..26519,26586..26588,
26592..26594))
/locus_tag="Avi_5030"
/note="catalytic Zn binding site [ion binding]; other
site"
/db_xref="CDD:176194"
gene complement(26713..27660)
/locus_tag="Avi_5031"
/db_xref="GeneID:7381194"
CDS complement(26713..27660)
/locus_tag="Avi_5031"
/codon_start=1
/transl_table=11
/product="2-hydroxyacid dehydrogenase"
/protein_id="YP_002546945.1"
/db_xref="GI:222106154"
/db_xref="GeneID:7381194"
/translation="MAKPEILQVGPYPAWDEGPLNDQFTVHRYFDAADKNAFVAHVGP
SIQGIATRGELGADRAMIDACPKLEIISVYGVGYDAVDLAACRDRGIRVTNTPDVLTN
DVADLGIAMMLCQSRGMIGAETWVKDGSWAAKGLYPLKRRVWGRRAGVLGLGRIGFEV
AKRLKGFDMQISYSDVAAKPYAEGMTFVADPVELAGNSDFLFVTLAASADTRHIVGRD
VIEALGPEGMLINISRASNIDEAALLEALEAGRLGSAALDVFEGEPKLNPRFLALDNV
LLQPHHASGTIETRQAMGQLVRDNLTAHFAGSALPTPVL"
misc_feature complement(26719..27654)
/locus_tag="Avi_5031"
/note="Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism /
General function prediction only]; Region: LdhA; COG1052"
/db_xref="CDD:31252"
misc_feature complement(26818..27336)
/locus_tag="Avi_5031"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
gene 27769..28527
/gene="idnO"
/locus_tag="Avi_5032"
/db_xref="GeneID:7381195"
CDS 27769..28527
/gene="idnO"
/locus_tag="Avi_5032"
/note="catalyzes the formation of 5-dehydro-D-gluconate
from D-gluconate"
/codon_start=1
/transl_table=11
/product="gluconate 5-dehydrogenase"
/protein_id="YP_002546946.1"
/db_xref="GI:222106155"
/db_xref="GeneID:7381195"
/translation="MSLGLFDLTGRRALVTGSSQGIGFALAQGLRAAGATVIVNGRDE
AKLAAAAARIGDGCDSLAFDVTDHQASRDAVDGFEATKGPIDILVNNAGMQFRGPLEE
FPADAFERLLRTNISSVFNVGQAAARHMIKRGAGKIINIASVQTALARPSIAPYTATK
GAVGNLTKGMATDWAKYGLQCNAIAPGYFDTPLNAALVADPDFSTWLEKRTPAGRWGK
VEELVGACIFLASGASSFVNGHVLYVDGGITASL"
misc_feature 27769..28518
/gene="idnO"
/locus_tag="Avi_5032"
/note="gluconate 5-dehydrogenase; Provisional; Region:
PRK06124"
/db_xref="CDD:180412"
misc_feature 27784..28518
/gene="idnO"
/locus_tag="Avi_5032"
/note="gluconate 5-dehydrogenase (Ga5DH)-like, classical
(c) SDRs; Region: Ga5DH-like_SDR_c; cd05347"
/db_xref="CDD:187605"
misc_feature order(27817..27819,27823..27834,27889..27897,27955..27963,
28039..28050,28108..28110,28189..28197,28234..28236,
28246..28248,28324..28335,28339..28350)
/gene="idnO"
/locus_tag="Avi_5032"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187605"
misc_feature order(27970..27972,28063..28077,28081..28083,28090..28095,
28102..28104,28117..28119,28126..28131,28138..28140,
28147..28149,28201..28209,28225..28230,28237..28242,
28249..28254,28261..28266,28270..28278,28282..28290)
/gene="idnO"
/locus_tag="Avi_5032"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187605"
misc_feature order(28111..28113,28195..28197,28234..28236,28246..28248)
/gene="idnO"
/locus_tag="Avi_5032"
/note="active site"
/db_xref="CDD:187605"
gene 28529..29032
/gene="gntK"
/locus_tag="Avi_5034"
/db_xref="GeneID:7381196"
CDS 28529..29032
/gene="gntK"
/locus_tag="Avi_5034"
/codon_start=1
/transl_table=11
/product="gluconokinase"
/protein_id="YP_002546947.1"
/db_xref="GI:222106156"
/db_xref="GeneID:7381196"
/translation="MNAVVKFVLMGVSGCGKSSVGAALAARLSAVYIDGDDLHPPQNI
ARMQAGIPLGDEDRWAWLDAVGTRLAGGQGVTIIGCSALKRAYRDRIREKACGSVRFI
HLAGSHAVIARRVAERPGHFMPASLLDSQFAALEPPGADEQAVTVDIDQPLDSLVAAI
VSAIGEE"
misc_feature 28547..28975
/gene="gntK"
/locus_tag="Avi_5034"
/note="Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits; Region: GntK; cd02021"
/db_xref="CDD:30194"
misc_feature 28556..29029
/gene="gntK"
/locus_tag="Avi_5034"
/note="Gluconate kinase [Carbohydrate transport and
metabolism]; Region: GntK; COG3265"
/db_xref="CDD:33076"
misc_feature order(28559..28582,28628..28630,28634..28636,28868..28870,
28880..28882)
/gene="gntK"
/locus_tag="Avi_5034"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30194"
misc_feature order(28565..28570,28880..28882)
/gene="gntK"
/locus_tag="Avi_5034"
/note="Gluconate-6-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:30194"
gene 29035..29919
/gene="garR"
/locus_tag="Avi_5035"
/db_xref="GeneID:7381197"
CDS 29035..29919
/gene="garR"
/locus_tag="Avi_5035"
/codon_start=1
/transl_table=11
/product="2-hydroxy-3-oxopropionate reductase"
/protein_id="YP_002546948.1"
/db_xref="GI:222106157"
/db_xref="GeneID:7381197"
/translation="MTNTVALIGAGAMGGAIGRRLVETGNQLTVFDLNAEKVAELTAL
GATSAKTAAEAASRSDYVILSLNAPHIIRAAVFGKDGVAEGAKPGTLIIDMSSIDPEA
TRQLAGDAAQMGLRWVDSPLSGGAPKAAIGELTLMAGGTEQDVADAHQVLQHIASNYT
HMGPVGAGQTTKLINQVLCGLNFLAVAEATQLALDAGVDAAKIPQALKGGRADSAILQ
EYMPRYVTKDYRRTGRIDNMVKDLNGAQDLARRTNTAMPLTAVCAEVHRMLTAAGLGG
EDQAMLMEFFTGAKREIS"
misc_feature 29098..29892
/gene="garR"
/locus_tag="Avi_5035"
/note="3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism];
Region: MmsB; COG2084"
/db_xref="CDD:32267"
misc_feature 29098..>29556
/gene="garR"
/locus_tag="Avi_5035"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene 29919..30251
/locus_tag="Avi_5036"
/db_xref="GeneID:7381198"
CDS 29919..30251
/locus_tag="Avi_5036"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546949.1"
/db_xref="GI:222106158"
/db_xref="GeneID:7381198"
/translation="MITRYALFEGTVKPGQTEAFRAAVLETILPKWKQFPKAIDVRVS
FAEARDDGAPEFPMILAINYPDLEAVEAALASPVRAEARAATEAVLSQFFDGRIHHHV
TLANEFAL"
gene 30378..31391
/locus_tag="Avi_5038"
/db_xref="GeneID:7381199"
CDS 30378..31391
/locus_tag="Avi_5038"
/codon_start=1
/transl_table=11
/product="transcriptional regulator LacI family"
/protein_id="YP_002546950.1"
/db_xref="GI:222106159"
/db_xref="GeneID:7381199"
/translation="MTDFRKPPTMADIARVTGVSPMTVSRAFKTDSLISKETRDAILQ
AAEDLGYVFDSTASNLRSQRSDFVAVTIPSINNANFADTVGGLSETLATRKMQILLGY
TNYDMQEEERLIEQLLRRKPQAIVVTGGKHTPRARKLLANAHIPVIETWDVPSEPIGH
YVGFSNAGAVCAMVDHFVAVGYRRLAFIGGDVGRDTRGSDRRNGFIAAMTRHGLDASR
LIAAGPPPISMREGANAMTRLLETLPDTEAVICVSDLSAFGALTECQRRGIAVPEGIA
IAGFGNYEIGAISVPTITTINAFSRDIGEKAARLILDLLDGRPLAGNITITPELILRD
SSL"
misc_feature 30399..31382
/locus_tag="Avi_5038"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature 30408..30563
/locus_tag="Avi_5038"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature order(30408..30410,30432..30446,30450..30455,30462..30464,
30477..30482,30489..30491,30528..30530,30537..30539,
30546..30551,30555..30560)
/locus_tag="Avi_5038"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature 30528..30557
/locus_tag="Avi_5038"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature 30576..31382
/locus_tag="Avi_5038"
/note="Ligand-binding domain of DNA transcription
repressor GntR specific for gluconate, a member of the
LacI-GalR family of bacterial transcription regulators;
Region: PBP1_GntR; cd01575"
/db_xref="CDD:107260"
misc_feature order(30576..30578,30615..30623,30630..30635,30639..30644,
30663..30677,30681..30683,30714..30716,30723..30725,
30732..30740,31065..31067,31149..31151,31161..31163,
31170..31175)
/locus_tag="Avi_5038"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:107260"
misc_feature order(30612..30617,30624..30626,30759..30761,30828..30830,
30867..30869,30978..30980,31056..31058,31218..31220,
31269..31271)
/locus_tag="Avi_5038"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107260"
gene complement(31437..32531)
/locus_tag="Avi_5039"
/db_xref="GeneID:7381200"
CDS complement(31437..32531)
/locus_tag="Avi_5039"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter substrate-binding protein"
/protein_id="YP_002546951.1"
/db_xref="GI:222106160"
/db_xref="GeneID:7381200"
/translation="MKRRHILQATGALILLTAGNAWADPMAEAKAVVDKYASKVTTWD
GPKSAPKPQPGKTIVVLAGDLKNGGILGVSNGVEEAAKAIGWQVKVLDGAGSIGGRTA
AFGQAMALKPDAIIIDGFDAVEQAPALEQAKANKIPLVAWHAGPTIGPDEKNGLFANI
STDAMEVSKAAANWAYVDAKGKPGVIIFTDSTYAIAIAKADKMKAEIERLGGKVLAYV
DTPIAETSQRMPQLTTSLLQKYGDSWTHTLAINDLYFDFMGPSLASAGKGGTDAPINV
AAGDGSESAYQRIRAGQYQKVTVAEPLNLQGWQLVDELNRALNGEKWSGYMSPLHVVT
ADNVEFDGGPKNSFDPDNGYRDAYKKIWGK"
misc_feature complement(31515..32399)
/locus_tag="Avi_5039"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
RbsB; COG1879"
/db_xref="CDD:32063"
misc_feature complement(31530..32366)
/locus_tag="Avi_5039"
/note="Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems; Region:
PBP1_ABC_sugar_binding_like_6; cd06315"
/db_xref="CDD:107310"
misc_feature complement(order(31629..31631,31692..31694,31935..31937,
32103..32105,32325..32327))
/locus_tag="Avi_5039"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107310"
gene complement(32570..33628)
/locus_tag="Avi_5041"
/db_xref="GeneID:7381201"
CDS complement(32570..33628)
/locus_tag="Avi_5041"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002546952.1"
/db_xref="GI:222106161"
/db_xref="GeneID:7381201"
/translation="MQSIESNALEPTRAELSGMSTAQKIQRLLPVYGLVILTVGLILL
FSILLPQTFPTVLNLRSIISDKTIIAILSLAAMIPMAAGRIDLTIGYGIVLWHVLAIS
LQTMFGLPWPVAVLIVIALGAFTGFLNGLLVEVAKIDSFIATLGTGTVLYAIALWHTG
GRQVVGMLPQGFYSLNGTMVFGLPITGFYVLVLAVIMWLVLEYTPLGRYVYAIGANPK
AAALNGIPVRRFVIGAFVTSGTLAAVAGVLLASKLRIGQASVGLEYLLPALVGAFLGS
TTIKPGRVNVWGTMIGVIILAVGIAGIQQIGGSFYVEPLFNGVTLLVAIGIAGYAQRR
RSLSGRMAAPSTPHPKQQ"
misc_feature complement(32648..33430)
/locus_tag="Avi_5041"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature complement(32921..32977)
/locus_tag="Avi_5041"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene complement(33645..35141)
/locus_tag="Avi_5042"
/db_xref="GeneID:7381202"
CDS complement(33645..35141)
/locus_tag="Avi_5042"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(sugar)"
/protein_id="YP_002546953.1"
/db_xref="GI:222106162"
/db_xref="GeneID:7381202"
/translation="MVDEKLLEFCAITKTFGGTRALSNVSLDLRPGEILALLGENGAG
KSTLIKTLAGIYKPDTGEIRFRGQTYNHRPPKPNQRQPVAFIHQDLGLIEWMTVAENV
GLAQGYSLRNRLINWKQTEQRTAEALALVGCNFDPSTRIQSLTRTEKSLVAIARALAV
EADVLVLDEPTASLPADEVEKLFAAIRPLKERGVAMIYVSHRLDEIFRIADRVAVLRD
GQLVGEKPVTQTTPDELIRMIVGRKADQLFTKSTSPAGPAIVTVRDLGCRGAGPVSFD
IRQGELLGLVGLRGAGHELVGRALFGAEPASGTVTISGRPVDLTNPSTAMASGVGLIA
RDRTEESVAMSLSLRENTFINPAASGRRLLSFLTPAKEAAQAYAIGARVGLRPNDQSL
AIEALSGGNQQKVVVGRWLATGRRLLVAEDPTAGVDVGAKADIYRLIAEAVEGGLAVL
VVSTDFEEIAHICQRALVFSRGQILRELSGPELTTEAVIAAASASDAA"
misc_feature complement(33675..35141)
/locus_tag="Avi_5042"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:31325"
misc_feature complement(34470..35123)
/locus_tag="Avi_5042"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature complement(35004..35027)
/locus_tag="Avi_5042"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature complement(order(34539..34541,34635..34640,34878..34880,
35001..35009,35013..35018))
/locus_tag="Avi_5042"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72975"
misc_feature complement(34878..34889)
/locus_tag="Avi_5042"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature complement(order(34683..34697,34842..34856))
/locus_tag="Avi_5042"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature complement(34635..34652)
/locus_tag="Avi_5042"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature complement(34617..34628)
/locus_tag="Avi_5042"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature complement(34533..34553)
/locus_tag="Avi_5042"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
misc_feature complement(33720..34376)
/locus_tag="Avi_5042"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene 36674..37006
/locus_tag="Avi_5044"
/db_xref="GeneID:7381203"
CDS 36674..37006
/locus_tag="Avi_5044"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546954.1"
/db_xref="GI:222106163"
/db_xref="GeneID:7381203"
/translation="MARFDHEDQLADIMRQFFEVRDAARALRVRLETQRREMGVSVAA
FYDPRSNPVYAADILRHLDLRQSQANLLEAAERKVTGPSSTENDDEQNVMIGSLFSQD
DENLGTKE"
gene 37788..38825
/locus_tag="Avi_5045"
/db_xref="GeneID:7381204"
CDS 37788..38825
/locus_tag="Avi_5045"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546955.1"
/db_xref="GI:222106164"
/db_xref="GeneID:7381204"
/translation="MRLDERTARSDVGSGLRERLHYADAIASLWVDGELVHMEDLVFH
DARMDTRTPTHELTIAHLILRSRRELVQHEPSWAFSALGLLRLRGRGNWLSQEMTLPM
PQAISEPEEPAAEGSVDDAFEAELDRFDAVLKRSETVLDDVGKMRLRPRAEDPQAVVY
DPDWNEEARLAEWQTLLGDVQALPPVLAAACLLDAWQSQEVSEHSPWLGRLLAAAYLQ
KAGVAKFHLPALSIGLRAVPREQRQSPNRTQRLIAILEAFEKGAQLGLKEHDRLILAR
GNLERRTIGKRGSSKLPDLIDLVLSRPLVSAGLVAKYLEITPQGALGLIRQLPLRELT
GRGRYRAWGIL"
misc_feature 38259..38642
/locus_tag="Avi_5045"
/note="Protein of unknown function (DUF1612); Region:
DUF1612; pfam07756"
/db_xref="CDD:149040"
misc_feature 38661..38822
/locus_tag="Avi_5045"
/note="HTH DNA binding domain; Region: HTH_13; pfam11972"
/db_xref="CDD:152407"
gene 38955..39917
/locus_tag="Avi_5046"
/db_xref="GeneID:7381205"
CDS 38955..39917
/locus_tag="Avi_5046"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(ribose)"
/protein_id="YP_002546956.1"
/db_xref="GI:222106165"
/db_xref="GeneID:7381205"
/translation="MNKLCKLALSVSMTALACSSAVAANLTVGFSQIGSESGWRAAET
SVTKMEAEKRKITLKFADAQQKQENQIKAIRGFIAQGVDAILIAPVVATGWEDVLSEA
KEAKIPVILLDRGIDAPKDLYLTSVASDQVKEGKVAGDWLVKSVGDKPCKVVELQGTV
GSTPAINRKKGFEEAIKGHSNISIIRSQTGDFTRAKGKEVMEGFLKAENGGKDICAMY
AHNDDMAVGGIQAIKDAGLKPGKDIKVVSIDGVPDIFQAMVAGEANASVELTPNMAGP
AFDVLAAYLKDGKQPEKFIITESKLYTPSDDPKGEYERRKGLGY"
misc_feature 38973..39881
/locus_tag="Avi_5046"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
RbsB; COG1879"
/db_xref="CDD:32063"
misc_feature 39033..39860
/locus_tag="Avi_5046"
/note="Periplasmic binding domain of ABC-type YtfQ-like
transport systems; Region: PBP1_YtfQ_like; cd06309"
/db_xref="CDD:107304"
misc_feature order(39069..39071,39291..39293,39456..39458,39699..39701,
39759..39761)
/locus_tag="Avi_5046"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107304"
gene 40001..41539
/locus_tag="Avi_5049"
/db_xref="GeneID:7381206"
CDS 40001..41539
/locus_tag="Avi_5049"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(ribose)"
/protein_id="YP_002546957.1"
/db_xref="GI:222106166"
/db_xref="GeneID:7381206"
/translation="MTISQQAVLAATAITKTFGAHVALHTIDIAFRPGEVHALLGENG
AGKSTLIKILTGAYTPDAGTVLVDGAPMSFSTPQQAQAAGIGTVYQEVNLLTNMTVAD
NLFIGRQPRRFGLVDHRTMEREARRILSGYGLDIDVRAELATFSVAVQQIIAIARAVE
LSGKVLILDEPTASLDRSEVLKLFEIVRGLKARGLAIVFITHFLDQVFELCDHATVLR
NGKLVGSQPIDTLNRTTLVRMMLGKDLSLHHDAVAGIEAEVGESLMQFTGYGLDGKVQ
PFTLTIHKGEVIGVAGLLGSGRTEMARLMFGIDSADKGELTLNGASFKIRSPRQAIDL
GFGFCPEDRKADGIFGDLSVRENIIIAMQAKLGWLRTLSYDEQMEIAGQFIEALDIRT
ASAELPIKLLSGGNQQKAILARWLATDPRFLILDEPTRGIDVGAHAEIVRMISRLRED
GLALIVISSELDEVVSYSSRIVVMRDRAMVAELHGADIAPDVIVQTIAAQSNTPAQSE
GAFS"
misc_feature 40001..41500
/locus_tag="Avi_5049"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:31325"
misc_feature 40025..40675
/locus_tag="Avi_5049"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature 40121..40144
/locus_tag="Avi_5049"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature order(40130..40135,40139..40147,40268..40270,40505..40510,
40604..40606)
/locus_tag="Avi_5049"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72975"
misc_feature 40259..40270
/locus_tag="Avi_5049"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature order(40292..40306,40334..40348)
/locus_tag="Avi_5049"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature 40493..40510
/locus_tag="Avi_5049"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature 40517..40528
/locus_tag="Avi_5049"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature 40592..40612
/locus_tag="Avi_5049"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
misc_feature 40778..41428
/locus_tag="Avi_5049"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene 41536..42576
/locus_tag="Avi_5050"
/db_xref="GeneID:7381207"
CDS 41536..42576
/locus_tag="Avi_5050"
/codon_start=1
/transl_table=11
/product="ribose ABC transporter permease"
/protein_id="YP_002546958.1"
/db_xref="GI:222106167"
/db_xref="GeneID:7381207"
/translation="MKIRSMSSFLKPQFAALIAVLLLNWMVFPGFFDIAWRDGRLFGS
LIDVLNRGAPVAILAIGMTAIIATRGVDLSVGAVMAVAGAVAATCAVAGQPLVVTLAA
ALAVALACGIWNGLLVAYLGIQPFVATLVLMVAGRGLAQLVTSGSIVTFSDPALVFVG
TGSLLGFPMPVVIALVLMLSAHTFMRRTAIGLFIEAIGTNLSAANYTGLRSRALILAV
YAFGGLCAGIAGTIAAADIRGADANNAGLWLELDAILAVVIGGTSLLGGRFSIPMSVL
GAVIIQAMNTGILVSGLPPEFNLIVKASVIIIILVLQSDRVSELVSFWKHRPAVLPKN
TQVKIQAPEKTG"
misc_feature 41692..42474
/locus_tag="Avi_5050"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 42139..42195
/locus_tag="Avi_5050"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 42573..43553
/locus_tag="Avi_5051"
/db_xref="GeneID:7381208"
CDS 42573..43553
/locus_tag="Avi_5051"
/codon_start=1
/transl_table=11
/product="ribose ABC transporter permease"
/protein_id="YP_002546959.1"
/db_xref="GI:222106168"
/db_xref="GeneID:7381208"
/translation="MNPRYRPLAATTLIFIVAYTLCVISYPGMFSTRVLGNFLTDNAF
LGIAAVGATFVILSGGIDLSVGAVIGLTGVITALLISHVGLDPIVVFPLVLVLSACFG
AVMGAVIHFLKVPPFIVTLAGMFLARGIASVLTQDSIPIDHPIYRAISQAYFRLPGGG
RLSAIGLLMLAAFLVCGLIAHRTRFGSYVYAIGGNPVSAALMGVPTGPVTIGIYALSA
FLSGLAGIVYSLYTSAGYPLAAVGIELDAIAAVVIGGTLLTGGYGFIFGTLIGVMLQG
LVQTYIVFEGTLSSWWTKIAIGALLFMFILLQKLVFHAGSGRTRTKKASA"
misc_feature 42696..43496
/locus_tag="Avi_5051"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 43161..43217
/locus_tag="Avi_5051"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 43550..44278
/locus_tag="Avi_5052"
/db_xref="GeneID:7381209"
CDS 43550..44278
/locus_tag="Avi_5052"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_002546960.1"
/db_xref="GI:222106169"
/db_xref="GeneID:7381209"
/translation="MIEPGSLLRSLSGRITARNFHSHVINEIGAGVISGRFAVGSILP
NDAALMDEFSVSRTVLREALKTLEAKGLVEARPKVGTKVAKKSRWNLYDRQVLAWCLE
TQPDDEFLRGLGEVRRSLEPLAAGDAARDHTGDQIRLMHYWLRQMELALDEPQSFSLA
DFELHRIIAEASSNPFLRALQGVIELSHALAYLPAVRDGKVCELTAVLQSHRVLVTAI
ERGLAEEAAAAMIGTIEQDHARMS"
misc_feature 43610..43801
/locus_tag="Avi_5052"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(43610..43612,43679..43681,43685..43690,43712..43726,
43730..43735,43742..43744,43772..43777,43781..43792)
/locus_tag="Avi_5052"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 43619..44269
/locus_tag="Avi_5052"
/note="phosphonate utilization associated transcriptional
regulator; Region: phnR_burk; TIGR03338"
/db_xref="CDD:132381"
misc_feature 43892..44239
/locus_tag="Avi_5052"
/note="This entry represents the C-terminal ligand binding
domain of many members of the GntR family; Region: FCD;
smart00895"
/db_xref="CDD:197963"
gene complement(44354..45802)
/gene="vdh"
/locus_tag="Avi_5053"
/db_xref="GeneID:7381210"
CDS complement(44354..45802)
/gene="vdh"
/locus_tag="Avi_5053"
/codon_start=1
/transl_table=11
/product="vanillin: NAD oxidoreductase"
/protein_id="YP_002546961.1"
/db_xref="GI:222106170"
/db_xref="GeneID:7381210"
/translation="MHEIQQIIGGKKVGALSGKTFDRIDPFNGEIASRAPASSLDDVK
AAVAAAQAAFPAWSRTGPGERRALLLKAADIMASKAADFTALMITETGATGPWAGFNT
MLAAGVLREAASMTSQIQGEVIPSDKPGTLSMAVRQAAGVCLGIAPWNAPIILGTRAI
AMAIACGNSVILKASEACPGVHVLIGQVLVEAGLPDGVINVITNAPEDAAQVVEALVS
APEVRRVNFTGSTKVGRIIGELCGRHLKPALLELGGKAPFLVLEDADIDAAVNAAVFG
CYMNMGQICMSTERLIVHEKVADEFVAKLAARAASLPAGDPRGHVVLGSLVNPQAAIK
MQEFIDDAVGKGATLAAGGKVTGSVVEATLLDHVTSGMRSFDEESFGPVKPVIRVKDE
EEAIRIANDSEYGLSSAIFSRDIQRALAIAARIEAGICHINGPTVADEAQMPFGGVKS
SGFGRFGGKAAINEFTDLRWITIEDPNQHYPF"
misc_feature complement(44390..45754)
/gene="vdh"
/locus_tag="Avi_5053"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:201055"
misc_feature complement(44384..45634)
/gene="vdh"
/locus_tag="Avi_5053"
/note="Salicylaldehyde dehydrogenase, DoxF-like; Region:
ALDH_SaliADH; cd07105"
/db_xref="CDD:143423"
misc_feature complement(order(44468..44470,44585..44587,44663..44665,
44669..44671,44948..44950,45044..45052,45092..45097,
45104..45106,45113..45124,45275..45280,45284..45286,
45329..45331,45353..45367))
/gene="vdh"
/locus_tag="Avi_5053"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143423"
misc_feature complement(order(44948..44950,44957..44959,45050..45052,
45353..45355))
/gene="vdh"
/locus_tag="Avi_5053"
/note="catalytic residues [active]"
/db_xref="CDD:143423"
gene complement(45882..47408)
/gene="vdh"
/locus_tag="Avi_5054"
/db_xref="GeneID:7381211"
CDS complement(45882..47408)
/gene="vdh"
/locus_tag="Avi_5054"
/codon_start=1
/transl_table=11
/product="vanillin: NAD oxidoreductase"
/protein_id="YP_002546962.1"
/db_xref="GI:222106171"
/db_xref="GeneID:7381211"
/translation="MAMERSATPGNSSLDWMDMASGTPTPFAASLLIGGKSVNAQGDR
VFTRANPLTSQIVTVAAAASLADAENAALAAAAAFPGWSASPCAMRKTILEQAAILLI
DAAEIFTRTMMAETGATRDWCRFNIDYGAKIFQDAAAMAVHVPGSICPDDLIVGASFS
LRQPAGVCLAISPWNAPILLAVRSIALALACGNCVILKSSELAPATQRLLGDLLQQAG
LPDGVLNIISNAPADAAAIVETLIAHPVVRRVNFTGSTRVGKIVAQIAARHLKRCLLE
LGGKAPLIVLDDADLEQAARAATFGAFFNQGQICMSTERIILVDAIADDFLSLFISKA
KTVKAGDPALGLTPLGSLISVESGRRIAGMIDDAVARGAHVLAGGRVHDTLMDATVVD
HVLPGMRLYREESFGPVVSIIRVTDADEAVTAANDCEYGLSGAVFSRDLHRALDVARR
VETGILHINSATVADDPLMPFGGVKASGYGRFGGVAALDEFTELRWVSLASGPADYPI
"
misc_feature complement(45912..47174)
/gene="vdh"
/locus_tag="Avi_5054"
/note="Salicylaldehyde dehydrogenase, DoxF-like; Region:
ALDH_SaliADH; cd07105"
/db_xref="CDD:143423"
misc_feature complement(45918..47174)
/gene="vdh"
/locus_tag="Avi_5054"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:201055"
misc_feature complement(order(45996..45998,46113..46115,46191..46193,
46197..46199,46479..46481,46575..46583,46623..46628,
46635..46637,46644..46655,46806..46811,46815..46817,
46860..46862,46884..46898))
/gene="vdh"
/locus_tag="Avi_5054"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143423"
misc_feature complement(order(46479..46481,46488..46490,46581..46583,
46884..46886))
/gene="vdh"
/locus_tag="Avi_5054"
/note="catalytic residues [active]"
/db_xref="CDD:143423"
gene 47628..48527
/locus_tag="Avi_5055"
/db_xref="GeneID:7381212"
CDS 47628..48527
/locus_tag="Avi_5055"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_002546963.1"
/db_xref="GI:222106172"
/db_xref="GeneID:7381212"
/translation="MVEEYALMRRAWGQSLEPTLSQRIIGIGNHPYRWFTHLVFIRLG
TVRLGAGDTAGVLQGPCLLLLPSSELVRLRLSAGSCGHVIGAAMDIIGDAIGDYPESK
PIRLFITTTTIMTGLLPQQASALEPHMRGLIDELNRDGQPSHMVVSAYLRLLINWVWR
HNMPPGPAASLSSGGAAPILHQFRQLVEADYRHHRPVADYAARLGISTDRLHALCRKH
LGRAPIELVHERLAQEGRIRLERSDSSARDISEALGFRDPAHFSHFFKRKTGLSPAAY
RRMVRQSSVNPGLGTNMDYHDWP"
misc_feature 48225..48464
/locus_tag="Avi_5055"
/note="Helix-turn-helix domain; Region: HTH_18; pfam12833"
/db_xref="CDD:205096"
misc_feature <48366..48461
/locus_tag="Avi_5055"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene complement(48665..49390)
/locus_tag="Avi_5056"
/db_xref="GeneID:7381213"
CDS complement(48665..49390)
/locus_tag="Avi_5056"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546964.1"
/db_xref="GI:222106173"
/db_xref="GeneID:7381213"
/translation="MTDYVLSDATRAKYKKISTASIATALFKRGLRNQFIQGVVPVAP
KAETMVGQAFTLRYIVAREDRNPITVFRDQKHPQRVAMEICPPGHVLVMDARKDARAA
TAGSILITRLALRGAAGVVSDGGFRDADGIGALDMPAYYAKPSAPTNLTLHEAIDINV
PISCGDVAVFPGDVLVGDRDGVMVIPAHLADELADECTDMESYEDFVLEQVKAGAVII
GLYPCTKDEHQQKYEAWRKEHGR"
misc_feature complement(48668..49390)
/locus_tag="Avi_5056"
/note="hypothetical protein; Validated; Region: PRK08245"
/db_xref="CDD:181318"
gene complement(49408..51144)
/gene="ilvD"
/locus_tag="Avi_5057"
/db_xref="GeneID:7381214"
CDS complement(49408..51144)
/gene="ilvD"
/locus_tag="Avi_5057"
/note="catalyzes the formation of 3-methyl-2-oxobutanoate
from 2,3,-dihydroxy-3-methylbutanoate"
/codon_start=1
/transl_table=11
/product="dihydroxy-acid dehydratase"
/protein_id="YP_002546965.1"
/db_xref="GI:222106174"
/db_xref="GeneID:7381214"
/translation="MTSKKTPETLRSARWFAPDDLRSFGHRSRMMQLGYAEEDFRDKP
VIGILDTWSELNTCHAHFKERVQDVKRGVTQAGGFPVQMPSLSVDESFTKPTSMLYRN
MLAMETEEMIRSHPLDGVVLMGGCDKTTPGLVMGAISVGVPMIYLPAGPMLRGNYAGK
ILGSGSDAWKYWDERRAGHISDAEWLGIQGGIARSAGTCMTMGTASTMTAIADAMGLT
LPGASSIPAVDANHQRMSASCGRRIVEMVWEDLTPDQIITDAACRNAAIVAMATGCST
NAVVHLIAMARRAGVDLTLDDLDALGRVTPLIANVRPSGKDYLMEDFFYAGGLRALMK
QLEERLDLSAMTVTGKTMGENLEGAEVYNDDVIRPLSNPVYHQGSLAVLRGNLCPTGA
VIKPAACDPKFHVHQGPALVFDSYPEMKKAIDDEHLDVTPDHVLVLRNAGPLGGPGFP
EWGMLPIPKALIKQGHRDMLRISDARMSGTSYGACVLHVSPESYIGGPLALLRTGDIV
RLDLPNRSLDMLVDDAELARRKAAWTAPEPHFQRGYGWMFSRHVTQADKGCDFDFLET
GFGKSAGEPDIY"
misc_feature complement(49411..51141)
/gene="ilvD"
/locus_tag="Avi_5057"
/note="dihydroxy-acid dehydratase; Provisional; Region:
PRK13016"
/db_xref="CDD:171835"
gene complement(51188..52057)
/locus_tag="Avi_5058"
/db_xref="GeneID:7381215"
CDS complement(51188..52057)
/locus_tag="Avi_5058"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002546966.1"
/db_xref="GI:222106175"
/db_xref="GeneID:7381215"
/translation="MLSPNIILAADVAAAKPYDNIKPVEQKLSVFETLWGISALRKTL
LIVVLAIIWQVYASFLDNPLLFPTLSDTLVTLTDRFADGTLPARIWTTLQVLFMGYTV
GTVLAALLTVLAINTRIGTDFLETMTAMFNPLPAISLLPLALIWFGLGASSLVFVLVH
SVLWAVALNTHSGFLGVSRTLRMVGANYGLTGISYVLRILVPAAFPSILTGLKIGWAF
AWRTLIAAELVFGVSSGQGGLGWFIFENRNLLDIPAVFAGLLTVIIIGLIVENLVFQT
IERHTIQKWGMKE"
misc_feature complement(51287..51943)
/locus_tag="Avi_5058"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature complement(51293..>51709)
/locus_tag="Avi_5058"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cl00427"
/db_xref="CDD:211439"
misc_feature complement(order(51449..51451,51461..51466,51482..51520))
/locus_tag="Avi_5058"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
misc_feature complement(order(51305..51307,51335..51337,51341..51343,
51377..51379))
/locus_tag="Avi_5058"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
gene complement(52062..52877)
/gene="ssuB"
/locus_tag="Avi_5059"
/db_xref="GeneID:7381216"
CDS complement(52062..52877)
/gene="ssuB"
/locus_tag="Avi_5059"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(nitrate/sulfonates)"
/protein_id="YP_002546967.1"
/db_xref="GI:222106176"
/db_xref="GeneID:7381216"
/translation="MMQATAAAVRLAPAPEKAPLLSVDRVTLRYKTPNLLITATEDVS
FDVRESDRFVLLGPSGCGKSTLLKAVGGYMTPVSGTIHINGRQVKAPGPDRMMVFQEF
DQLMPWKTVLENVMFPLLVARKMPRPEAEALARHYIDKVKLTRAVNSYPHTLSGGMKQ
RVAIARGMAMQPDILLMDEPFAALDALTRRQMQDELLQLWEDTKFTVIFVTHSIAEAI
KISNRILLLSPHPGRVKAEVVDVDKVSQADGSAAALERDIHNLLFSNEPGHKE"
misc_feature complement(52080..52823)
/gene="ssuB"
/locus_tag="Avi_5059"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:31313"
misc_feature complement(52164..52817)
/gene="ssuB"
/locus_tag="Avi_5059"
/note="NrtD and SsuB are the ATP-binding subunits of the
bacterial ABC-type nitrate and sulfonate transport
systems, respectively. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:73052"
misc_feature complement(52686..52709)
/gene="ssuB"
/locus_tag="Avi_5059"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(order(52242..52244,52341..52346,52578..52580,
52683..52691,52695..52700))
/gene="ssuB"
/locus_tag="Avi_5059"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73052"
misc_feature complement(52578..52589)
/gene="ssuB"
/locus_tag="Avi_5059"
/note="Q-loop/lid; other site"
/db_xref="CDD:73052"
misc_feature complement(52389..52418)
/gene="ssuB"
/locus_tag="Avi_5059"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73052"
misc_feature complement(52341..52358)
/gene="ssuB"
/locus_tag="Avi_5059"
/note="Walker B; other site"
/db_xref="CDD:73052"
misc_feature complement(52323..52334)
/gene="ssuB"
/locus_tag="Avi_5059"
/note="D-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(52236..52256)
/gene="ssuB"
/locus_tag="Avi_5059"
/note="H-loop/switch region; other site"
/db_xref="CDD:73052"
gene complement(53069..54052)
/locus_tag="Avi_5060"
/db_xref="GeneID:7381217"
CDS complement(53069..54052)
/locus_tag="Avi_5060"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="YP_002546968.1"
/db_xref="GI:222106177"
/db_xref="GeneID:7381217"
/translation="MTAIALALGLACPSQAEEKTTLSITRQPGILYLASHVMETQKLI
EKQAAAEGLQGITVEWRTFSGGGAQTDALLAGNVDVVNTGTGNLLLLWDRTRGKVKGI
ITSSAQPVIMVSNDPRIKTLKDIQDGDKIAVPTVGVSTQAILLQMAAAKLYGDDQVKK
FDKNTVQLGHPDALAAIANSQHEVKNHFSAPPFQYVELKQPGVHKVTDSREIIGGALT
QATFFTTTSFAEANPKLVKALRVATEEAITFIKKDPKAALEAYKTVSGDKTSLDDLMV
MMKEPGMDEWRTDPQGTMKFAEHLHKVGTLKSMPKAWTDYYLPESAYLNGN"
misc_feature complement(53078..54052)
/locus_tag="Avi_5060"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
systems, periplasmic components [Inorganic ion transport
and metabolism]; Region: TauA; COG0715"
/db_xref="CDD:31059"
misc_feature complement(53258..54007)
/locus_tag="Avi_5060"
/note="NMT1-like family; Region: NMT1_2; pfam13379"
/db_xref="CDD:205558"
gene 54302..55006
/locus_tag="Avi_5061"
/db_xref="GeneID:7381218"
CDS 54302..55006
/locus_tag="Avi_5061"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_002546969.1"
/db_xref="GI:222106178"
/db_xref="GeneID:7381218"
/translation="MDGCMNGTIRGGQLDRSRQVALQVHEILRDRILKVQLVPGTILS
RASLQLEFGVSQTPVRDALMRLQEEDIVEVYPQYATVVAKIDIDHARQAQFLRLSIEL
EAVRRLTEEAPGETAKELGAILARQKEVATQETYDTFDGIDREFHRKLYEKSGILQLW
ANVRRQSVHLDRLRRLNLPMPGKMQTVLDDHEAIVAAIASGNPEAAASALRKHLSGTL
SIIDLISAEYPDYIRK"
misc_feature 54329..55000
/locus_tag="Avi_5061"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:31987"
misc_feature 54359..54550
/locus_tag="Avi_5061"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(54362..54364,54434..54439,54461..54475,54479..54484,
54491..54493,54521..54526,54530..54541)
/locus_tag="Avi_5061"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 54587..54943
/locus_tag="Avi_5061"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:203742"
gene 55427..56710
/locus_tag="Avi_5062"
/db_xref="GeneID:7381219"
CDS 55427..56710
/locus_tag="Avi_5062"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002546970.1"
/db_xref="GI:222106179"
/db_xref="GeneID:7381219"
/translation="MNLASAPRHEESARQPYAAVSVGPSEAGQIMRDKVLALVPLIRR
EAEAGEKLGAMTPAVVNALNEVGFFKITLPREYGGYGFGARDIAEVVGAAATGDGSTA
WSGFVSVGLRNAFVFDEQTVSELMADAGSWVGPLMVGASVFSQVVGDARLVDGGFMVR
GKWSFGSGCKHAKWAFVGIQWEEGGVPHRGIALLSRDQYEIVDDWHVMGLQGTSSNSI
TALDEVFVPTRRTMASAEMPIRLAKIRNRFEGVGYQTGAFGMMLTVTISNVAITLGMA
KGCLQEFSQQANARKPFNLPYDTVAETPSTQVVAGRVNAMINAAETLIHGVADEVDRR
AASGLDFEPREEALNTMNLVFAARLCADAIDMMQICLGSSTVTLKNPIQRFARDARVL
ISHGAIRQDPAAEIAGRHVLGLPPFKMFAGGLPQK"
misc_feature 55520..56680
/locus_tag="Avi_5062"
/note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region:
CaiA; COG1960"
/db_xref="CDD:32143"
misc_feature 55523..56665
/locus_tag="Avi_5062"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
misc_feature order(55748..55750,55853..55855,55862..55864,55919..55921,
55925..55927,56618..56629,56633..56635,56639..56641)
/locus_tag="Avi_5062"
/note="active site"
/db_xref="CDD:173838"
gene 56881..57480
/locus_tag="Avi_5063"
/db_xref="GeneID:7381220"
CDS 56881..57480
/locus_tag="Avi_5063"
/codon_start=1
/transl_table=11
/product="NAD(P)H-flavin oxidoreductase"
/protein_id="YP_002546971.1"
/db_xref="GI:222106180"
/db_xref="GeneID:7381220"
/translation="MSISSNNRSSDYDIDPIFLDRWSPRALDPQAMSEEDLMTILEAA
RWAPSSFNAQPWRFIYAQRDTPEWQNIFGLLAPMNQAWASRASVLVVIISANTAIMPM
QTEPVPSYSHSFDAGAAWAYLALQATRLGWYAHGMAGFDVPRSYEVLGVPESFRVEAV
IAIGRIGDKSLLPPPLQEREQPNGRRPLQESAMKGRFIG"
misc_feature 56908..57459
/locus_tag="Avi_5063"
/note="Nitroreductase-like family 2. A subfamily of the
nitroreductase family containing uncharacterized proteins
that are similar to nitroreductase. Nitroreductase
catalyzes the reduction of nitroaromatic compounds such as
nitrotoluenes, nitrofurans and...; Region:
Nitroreductase_2; cd02138"
/db_xref="CDD:48385"
misc_feature order(56941..56943,56947..56949,56953..56955,57031..57033,
57292..57297)
/locus_tag="Avi_5063"
/note="putative FMN binding site [chemical binding]; other
site"
/db_xref="CDD:48385"
gene 57596..57991
/locus_tag="Avi_5064"
/db_xref="GeneID:7381221"
CDS 57596..57991
/locus_tag="Avi_5064"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546972.1"
/db_xref="GI:222106181"
/db_xref="GeneID:7381221"
/translation="MSEDRAAANKRLVLDFFRCVFEARNPDAARDFVTEDYIQHTDQL
PSGLAALEAFVRTIFPDGPVPTPPQLQHPPEFIVAEGDMVVLSAVMPQPDPEHPGEMC
LRYVFNAFRISNGKLAEHWGSAGKVYRSA"
misc_feature 57629..57961
/locus_tag="Avi_5064"
/note="Nuclear transport factor 2 (NTF2-like) superfamily.
This family includes members of the NTF2 family,
Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases,
and the beta subunit of Ring hydroxylating dioxygenases.
This family is a classic example of...; Region: NTF2_like;
cl09109"
/db_xref="CDD:211454"
gene 58678..59781
/gene="cfa"
/locus_tag="Avi_5066"
/db_xref="GeneID:7381222"
CDS 58678..59781
/gene="cfa"
/locus_tag="Avi_5066"
/codon_start=1
/transl_table=11
/product="cyclopropane-fatty-acyl-phospholipid synthase"
/protein_id="YP_002546973.1"
/db_xref="GI:222106182"
/db_xref="GeneID:7381222"
/translation="MFNPELALGEAFMDGKLGIEQGTIYELLELVFQNTGVDRLTGIA
RFMRRFTRLKRRIQQYNPVGRSKRNVAHHYDLDGSLYRLFLDSDSQYSCAYFEGRGSS
LEEAQLAKKRHLAAKLLIEPEHRVLDIGSGWGGLGLYLSEMTQADVTGVTLSQHQHAI
SNGRAKDIASSRRPRFLLQDYRDIKQQFDRIVSVGMFEHVGIGHFDEFFAKIRALLKP
DGLMLLHSIGVFDGPSHTNPWIQKYIFPGGYIPSLSEVLAAIERQGLVVCDIEILRLH
YAETLKAWRERFLARRDEAVALYDERFARMWEFYLASSETAFRYQGMMVFQIQLARDQ
SAAPLRRDYIHAAESRLRELEICKPVPLSRVAE"
misc_feature 58846..59673
/gene="cfa"
/locus_tag="Avi_5066"
/note="Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane]; Region: Cfa; COG2230"
/db_xref="CDD:32411"
misc_feature 59113..59352
/gene="cfa"
/locus_tag="Avi_5066"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
gene 59876..61366
/locus_tag="Avi_5067"
/db_xref="GeneID:7381223"
CDS 59876..61366
/locus_tag="Avi_5067"
/codon_start=1
/transl_table=11
/product="sulfate permease"
/protein_id="YP_002546974.1"
/db_xref="GI:222106183"
/db_xref="GeneID:7381223"
/translation="MSSNSLHQARTEWFGNIKGDALAGVVVALALIPEAIAFSIIAGV
DPKVGLYASFSISVLIAFVGGRPGMISAATAATAVLMITLAKTHGVEYLLAATILAGI
IQIVAGLLKLGRLMRFVSKSVMTGFVNALAILIFMAQLPELIHVPAPTYVLVAAGLAI
IYLFPYVTKAIPSPLVCIVVLTAISIYFGLDIRTVGDMGELPSTLPVLLLPNIPLNIE
TFLIILPYSAAVAVVGLLETLMTAAIVDELTDTPSNKNRECIGQGIANTITGFFGGMA
GCAMIGQSMINVKSGGRGRLSSLCAGVFLLFMILVLGQWVRQIPMAALVAIMIMVSIG
TFSWSSIRNLKDHPRSSSFVMIATVIGVVATHNLAVGVLVGVLLSAVFFAWKIAQIFQ
ITSILSPDGKTRTYKVEGQIFFASVEDFNQAFEFKEALENVIIDVSRAHIWDISSVAA
LDMIVLKFRREGAEVSILGLNRASETIVDKLAIHDKPGAMERLMGH"
misc_feature 59885..61342
/locus_tag="Avi_5067"
/note="Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism];
Region: SUL1; COG0659"
/db_xref="CDD:31004"
misc_feature 59891..60118
/locus_tag="Avi_5067"
/note="Sulfate transporter N-terminal domain with GLY
motif; Region: Sulfate_tra_GLY; pfam13792"
/db_xref="CDD:205965"
misc_feature 60194..60937
/locus_tag="Avi_5067"
/note="Sulfate transporter family; Region: Sulfate_transp;
pfam00916"
/db_xref="CDD:144493"
misc_feature 61070..61339
/locus_tag="Avi_5067"
/note="Sulphate Transporter and Anti-Sigma factor
antagonist domain of SulP-like sulfate transporters, plays
a role in the function and regulation of the transport
activity, proposed general NTP binding function; Region:
STAS_SulP_like_sulfate_transporter; cd07042"
/db_xref="CDD:132913"
gene 61378..62232
/gene="uspA"
/locus_tag="Avi_5068"
/db_xref="GeneID:7381224"
CDS 61378..62232
/gene="uspA"
/locus_tag="Avi_5068"
/codon_start=1
/transl_table=11
/product="Universal stress protein"
/protein_id="YP_002546975.1"
/db_xref="GI:222106184"
/db_xref="GeneID:7381224"
/translation="MIKIIGLIDGSIYAQSVCDHIAWIAGRSEVSVDILHVIGRRDLS
TEPVNLSGNIGLGARTALLAELAELDAQKARTAQHRGRLLLEEAKARLQAVGINSVNT
MLRNGDLAETLQELEESADLIVIGKRGEGADFAQLHLGSNLERVVRSSHKMIAIASRA
FKPIRKVLIAYDGGATAMKAVDYISGNPMFAGLSIKLVTVGDDTPEARQALVEGKRRF
TDADVPVETAIVAGQPDKAISDIVEREECDLLIMGAYSHSRLRALFLGSTTTEMIRAC
KVPVLIFR"
misc_feature 61384..61848
/gene="uspA"
/locus_tag="Avi_5068"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:30165"
misc_feature order(61396..61404,61486..61488,61750..61755,61759..61764,
61795..61806)
/gene="uspA"
/locus_tag="Avi_5068"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30165"
misc_feature 61873..62223
/gene="uspA"
/locus_tag="Avi_5068"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:30165"
misc_feature order(61885..61893,61975..61977,62131..62136,62140..62145,
62173..62184)
/gene="uspA"
/locus_tag="Avi_5068"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30165"
gene 62339..63541
/locus_tag="Avi_5070"
/db_xref="GeneID:7381225"
CDS 62339..63541
/locus_tag="Avi_5070"
/codon_start=1
/transl_table=11
/product="Major facilitator superfamily permease"
/protein_id="YP_002546976.1"
/db_xref="GI:222106185"
/db_xref="GeneID:7381225"
/translation="MIKNYWEFSSRNWQHLTFGAMLLAISSFGQTYFISISGAHFRDA
FRLSDGGLGTVYAIGTFLSALTLTWAGRLIDYTTVRAFSWAVAVLLACACGLVSFSPN
VYVLLLAFYLLRLGGQGLMVHTALTATARTFPADAGKALGIIALGMSVAQATFPLAGV
TMNDTFGWRASWAINALFVIAAVGVALTVLPRAGDRPLRQRRPKGQASTEPRRTSLLL
DRRLLMTLPAVLASPFIVTGFFFHQGRLAEQKHWDITWLAAGFVVFAIVQAVSVVVIG
PVIDRFGTKRILPYFLLPQAIGMLALGLLSSSWVALVYMVLMGISSAFGSTLATALWV
ELFGANELARVRSAVEAGSVIASGASPVIMGLLIDAGFPLSWQALACCAYTVLASIIA
IGVQRVKV"
misc_feature 62396..63421
/locus_tag="Avi_5070"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:191813"
misc_feature 63176..>63532
/locus_tag="Avi_5070"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene complement(63703..65487)
/locus_tag="Avi_5072"
/db_xref="GeneID:7381226"
CDS complement(63703..65487)
/locus_tag="Avi_5072"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546977.1"
/db_xref="GI:222106186"
/db_xref="GeneID:7381226"
/translation="MENNTSATSIICVSSHDAAPSVGTADTELASPTPGQIRDALDQL
CNGNTFATAKRSRQLLQYLVEEALAGRANAIGEHAIAQDVFGKDEHFDPRIDTCVRTE
AWRLRNRLQSYYEHEGRFDVVRVAFMPRSLVPIFSSQPSLPAADIKDFPRRIGIHMDC
EPDAGGNEQHLARRLPEEIASSLFKLSSIVPVLPGGASRSELELRCAIRSDEQWIRIV
TTMVDLDGLVQGSKTFSFSRNTAKPSPTLIANAIGEMVSDSLSRNILGQAVNIPCHSD
ENENRFLDQLLRGSHINRRERLIELRAAVLRYEQIISDDPLDQLSHRRLIGALGQFLS
LAPGSISRVMPKLAASAHSALSLNGNLSDVWLILGWASSYAYDWPQTEGACRQAIAIT
PLDPSPYILLALTYLQSGQIVSALQIAEEAINLDPYSPMVANVYALTLNAARRFREAA
KVARDALDAEPGFVKLRLTYGEAKLNMGQIDSAIEEFTAASRIMTEDATACGLLGLAY
GLSGERSEADRLLSRVKQSPNLRGQAVHAEAMIHLGLGARDEAISALELAVTRRGTPG
LFLANAVFDPIRDDSRFSRIQHQMELAH"
misc_feature complement(64207..64401)
/locus_tag="Avi_5072"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature complement(64009..64293)
/locus_tag="Avi_5072"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(64105..64293)
/locus_tag="Avi_5072"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature complement(order(64057..64062,64069..64074,64081..64086,
64162..64167,64174..64179,64183..64188,64273..64278,
64285..64290))
/locus_tag="Avi_5072"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(order(64018..64020,64027..64029,64039..64041,
64075..64077,64120..64122,64129..64131,64141..64143,
64177..64179,64222..64224,64231..64233,64243..64245,
64279..64281))
/locus_tag="Avi_5072"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene complement(65889..66572)
/locus_tag="Avi_5073"
/db_xref="GeneID:7381227"
CDS complement(65889..66572)
/locus_tag="Avi_5073"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_002546978.1"
/db_xref="GI:222106187"
/db_xref="GeneID:7381227"
/translation="MPHPRNKNSRSKRELIMAAAVDLLLANGYERTSMDAVAAKAGVS
KTTVYAHFSDKLELFHAVMTHAASDFALDLGSVVESRSVADPLEQLTSVLLEVVKAAS
APELTAYFRVLIAEIDRRSELQAMSDQVQSDMPDVIRIIASLIVKVAATRGYVVEDPE
RYATLLVRMTAPGTQFDILVANFRPSDEILAAHIGLIVSIFFDGIGPKDSDTKVVNLP
PLYLYPIRR"
misc_feature complement(65991..66572)
/locus_tag="Avi_5073"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature complement(66387..66527)
/locus_tag="Avi_5073"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 66801..68207
/locus_tag="Avi_5074"
/db_xref="GeneID:7381228"
CDS 66801..68207
/locus_tag="Avi_5074"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002546979.1"
/db_xref="GI:222106188"
/db_xref="GeneID:7381228"
/translation="MSALSSDLSLMPGLPPAPSGQPAPGMPPMPGLPPMSGLPPMPPA
VPSAPVESKWLTDKGRDIRDKARALIPLIREQAREGEKIGALTPDVLKALSDIGIYKM
AMPAEWGGYALGARDLVEIIATLGEADGSAGWAGFVAVGVKNLLALDGEVVGEVLEDT
RGWAGPTVVGASVFATKVGEGRKVEGGWMVKGRWAFGSGCKHAKWAMLGIEYDPKVAG
GTGRGVVVVDRSKYEILDDWHVMGLSGSASNSLAIKEEVFVPDRRFLDLSQYPLRFQQ
LHTRYQGFGYQQRGLANLATVSLCDMSIALGMARGALSCFAEQAKKRPPFSLPYPTIS
DMASAQVAAGKALAMIKVAQATIESYADQVDARTAEGQDFTHDEDSEISLTLAYVASL
CEDAINLLQKTLGSSTMSLNNPIQRFVRDVRVLASHGAVRLDPQAEVNGRRLLGITPF
PMFAGAVPERVNLEGKGL"
misc_feature 66963..68153
/locus_tag="Avi_5074"
/note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region:
CaiA; COG1960"
/db_xref="CDD:32143"
misc_feature 66990..68138
/locus_tag="Avi_5074"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
misc_feature order(67215..67217,67320..67322,67326..67328,67386..67388,
67392..67394,68091..68102,68106..68108,68112..68114)
/locus_tag="Avi_5074"
/note="active site"
/db_xref="CDD:173838"
gene 68212..68739
/locus_tag="Avi_5075"
/db_xref="GeneID:7381229"
CDS 68212..68739
/locus_tag="Avi_5075"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546980.1"
/db_xref="GI:222106189"
/db_xref="GeneID:7381229"
/translation="MSDFTIIDGVAHIHEPKLYETWLDREDYIAAVSASPSPEVAAKK
RLLVDFQVDLAKMVRANAVEENVVDVMTKYVDNDYIQHDPNANGNGLANLIEYFKKVP
VGRGPAPPVVSVVVEGELGCVMMKHPMPDPTAPGQTYDWYILTVFRVRNGKLREHWSA
FQKMAAPMIPQKPPH"
misc_feature <68617..68706
/locus_tag="Avi_5075"
/note="Nuclear transport factor 2 (NTF2-like) superfamily.
This family includes members of the NTF2 family,
Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases,
and the beta subunit of Ring hydroxylating dioxygenases.
This family is a classic example of...; Region: NTF2_like;
cl09109"
/db_xref="CDD:211454"
gene 69066..70604
/locus_tag="Avi_5076"
/db_xref="GeneID:7381230"
CDS 69066..70604
/locus_tag="Avi_5076"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily permease"
/protein_id="YP_002546981.1"
/db_xref="GI:222106190"
/db_xref="GeneID:7381230"
/translation="MPARMCLPAERPDGWADNLLLIGNRQPQSLTIKPAPSPVFGGGI
ARRLHLKRGICSMEQAQISTISPFEGNTLRAYFKSLVGAPRKARMALIGCLILMVISP
AGLSAMTPFVIAAFSAETHRAQADALLIFVALPLLLSPLILPLAGAWVDRWGARAVAI
PAVILYAVTTAMIPLVSGTIWILTPMIILAALFGFMSSLAVIFKIITCWFPEHRGIGF
ALVGVLSSFANALFSPLFQWLIYGATNSDGSASGLHQLGGIGWSGSYFVVAGTIAILG
IPSALFLISEPAKPSAAKRLPMPGPHLNMENAAGIPLKMAIRTKTWIFITLFLAITAA
GPMTVRQNSVDFFQQRGFDLNDIAFSQSVLFVASVVGLFLGGMILDRSRRPWVIAPLL
AMVPIGLTIAYFNHGSVFLLYVAMSSLGFATGAESALGPFLVARYFGPKAFAQIQGLT
LAICSLSFGLTPFLTSAMATAAGSYFVPFAILTGLTMVAVALGALLPNYPPEWPTGAE
VSGK"
misc_feature 69504..70556
/locus_tag="Avi_5076"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 69504..70451
/locus_tag="Avi_5076"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:191813"
misc_feature order(69504..69506,69642..69647,69654..69659,69666..69671,
69684..69686,69717..69722,69729..69734,69750..69752,
70059..70061,70068..70073,70080..70085,70092..70094,
70134..70136,70146..70148,70158..70160,70167..70169,
70179..70181,70323..70325,70332..70337,70344..70346,
70356..70361,70368..70370,70401..70406,70413..70418,
70425..70430,70437..70439)
/locus_tag="Avi_5076"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 70629..71237
/locus_tag="Avi_5077"
/db_xref="GeneID:7381231"
CDS 70629..71237
/locus_tag="Avi_5077"
/codon_start=1
/transl_table=11
/product="nitrilotriacetate monooxygenase"
/protein_id="YP_002546982.1"
/db_xref="GI:222106191"
/db_xref="GeneID:7381231"
/translation="MIRYRTQKPDQGALPNNPSHDWRHNNERYPMLNQARASAEHLSP
HDQAEFRRALGHYPTGVCIVTAHHDNKPIGMTIGSFTSVSLDPPLVGFLPAHSSQTWP
LIAKAGAFCVNILADDQSDLPGRFAKRDADRFQDIAHSRSSLDLPVFDGVVAWIDCTL
HSAHEAGDHLFVMGNVLTLSVVRDRPPLLFCRGAFGGFVAGT"
misc_feature 70788..71213
/locus_tag="Avi_5077"
/note="Flavin reductase like domain; Region:
Flavin_Reduct; smart00903"
/db_xref="CDD:197971"
gene 71280..72179
/locus_tag="Avi_5079"
/db_xref="GeneID:7381232"
CDS 71280..72179
/locus_tag="Avi_5079"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002546983.1"
/db_xref="GI:222106192"
/db_xref="GeneID:7381232"
/translation="MTYLIRQMGHVVISSPDPLGAAKDICDVVGLRITEQDGDTVYLS
SNDRHHELTYIKGDGKAVACGLEAVSADAVDEVKRRALSDGLTVLDDKPLGKHYDKAV
RIVAPGGAIFEVHTPIARNQPRRYNYSTPGARPRRIEHINAFAPDTHAFGEFCAKVLG
MKLSDMTGEDGLRWYRAEDGFHHTIAMGPGESGLHHYAFDLHSLEDLAAIADNLTLKD
RAMVWGPGRHGAGGNIFTYYADPHGCLVENSIELDRIDNDATYEPRTWDISEGLAGRW
LNLWGTPPTPGFLRPGIAFDPKV"
misc_feature 71292..72137
/locus_tag="Avi_5079"
/note="3,4-dihydroxyphenylacetate 2,3-dioxygenase; Region:
HpaD; TIGR02295"
/db_xref="CDD:211729"
misc_feature 71292..>71543
/locus_tag="Avi_5079"
/note="This domain superfamily is found in a variety of
structurally related metalloproteins, including the type I
extradiol dioxygenases, glyoxalase I and a group of
antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
cl14632"
/db_xref="CDD:211465"
misc_feature order(71307..71309,71319..71321,71397..71399,71436..71438,
71442..71444,71466..71468)
/locus_tag="Avi_5079"
/note="active site"
/db_xref="CDD:211348"
misc_feature 71697..72080
/locus_tag="Avi_5079"
/note="C-terminal domain of type I, class II extradiol
dioxygenases; catalytic domain; Region:
ED_TypeI_classII_C; cd08343"
/db_xref="CDD:211355"
misc_feature order(71697..71699,71703..71705,71799..71801,71826..71828,
71865..71867,71871..71873,71961..71963,71988..71990,
72018..72020)
/locus_tag="Avi_5079"
/note="active site"
/db_xref="CDD:211355"
misc_feature order(71697..71699,71865..71867,72018..72020)
/locus_tag="Avi_5079"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:211355"
gene 72997..74346
/locus_tag="Avi_5080"
/db_xref="GeneID:7381233"
CDS 72997..74346
/locus_tag="Avi_5080"
/codon_start=1
/transl_table=11
/product="Carbohydrate-selective porin"
/protein_id="YP_002546984.1"
/db_xref="GI:222106193"
/db_xref="GeneID:7381233"
/translation="MRILYMITIPLLFATAAPAFAIDPEIGTQEPPFLDGPPPVYSGP
LAEAGRWLHENGVDLRIDYINIAQSASAYGFRKVGYGSFLVDLTGNITPDLRIRLTEA
INLPNNNVTGNLTAFLPPVTGNTDTALARFSVEADFLDDRLTIEAGRIGLARDFSIRG
YCSGISCINATQGKSLNLPDDVRSVWGARAAYKLTANTTLGFGLIEDNPDNWQNGDGW
TWGSGDAEGYIAAANVRHIETFMDSDKPFKLEAGAYFRSTPYEDTLYNSGWGNPTYGA
NTKIVTHDSGTTAMYAHARKVVWSRSSDSFNPENIAFYGGILHYFGEGHDYPWEAYVG
VEYSGFWQANPLASIGASAHYIRISEERAEYERNARRFFSGVDQRQSQDMFMFDVHGS
TGLFGNGILDFGAAYIVNPNSAFADFSTSRQKDGVVIYAALAFDLSTVLGLSPRRGP"
misc_feature 73111..74073
/locus_tag="Avi_5080"
/note="Carbohydrate-selective porin [Cell envelope
biogenesis, outer membrane]; Region: OprB; COG3659"
/db_xref="CDD:33457"
gene 74593..75489
/locus_tag="Avi_5081"
/db_xref="GeneID:7381234"
CDS 74593..75489
/locus_tag="Avi_5081"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546985.1"
/db_xref="GI:222106194"
/db_xref="GeneID:7381234"
/translation="MGFKFNQEFRYRMPTVFGPAVGPRQKPGGGMWALEETGTMNAEW
MAITYRTSADKLEALLPPGMSLRGEPLISVSCAWFKNLYWLAGRGYGILSIDFPVTYQ
GKTERLEGSFCPVIWEGAPDAILTGRDEMGFPKLFCDMPEITWDKEKATASCEASWFG
FKFFDIALGEMEEDDAPPSLPGSGGGAAMYYKYVPRTNPFQGGGADVAYITTPAPPPG
AGKPDAINFDGYEFKRWRAKGSFNWHKATFEQLPTTFHIVNAVADMPCFEIVKTEMVA
FSGPGIGVSVNSIRPVEPGDQE"
misc_feature 74626..>75216
/locus_tag="Avi_5081"
/note="Acetoacetate decarboxylase (ADC); Region: ADC;
pfam06314"
/db_xref="CDD:203424"
gene 75500..76354
/locus_tag="Avi_5082"
/db_xref="GeneID:7381235"
CDS 75500..76354
/locus_tag="Avi_5082"
/codon_start=1
/transl_table=11
/product="2-hydroxyhepta-24-diene-1"
/protein_id="YP_002546986.1"
/db_xref="GI:222106195"
/db_xref="GeneID:7381235"
/translation="MKLARFIVEGKPRLGKVVGSEIIDLSSVARECGSSMKALIERLD
ELRPALEALDSPSFVLADVQLAAPITDPRKFLAIGMNYRAHAEEAAAAGIPTPKSQLW
FNKQVTCINGPYDDVVLPSVSEKVDYEAELGFIIGKRCRHVKREDAQSVIAGYFVAND
VTARDWQFRSPTYTLGKSFDTHGPIGPWITTADEVPDPHNLTLSLSLNGEERQRTSTG
DMIYDIWDQISYLSTVMTLEPGDIIITGTPSNVGIATDTFMKPGDVVRVEVNGLGSIE
NRFVAEER"
misc_feature 75527..76348
/locus_tag="Avi_5082"
/note="2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway) [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: MhpD; COG0179"
/db_xref="CDD:30528"
misc_feature 75719..76339
/locus_tag="Avi_5082"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; pfam01557"
/db_xref="CDD:201859"
gene 76833..77324
/locus_tag="Avi_5084"
/db_xref="GeneID:7381236"
CDS 76833..77324
/locus_tag="Avi_5084"
/codon_start=1
/transl_table=11
/product="CMP/dCMP deaminase zinc-binding"
/protein_id="YP_002546987.1"
/db_xref="GI:222106196"
/db_xref="GeneID:7381236"
/translation="MTFSPVTGLDHEYFLRLSFKVALRAQETGNHPFGAILVGPDGEV
LMEQENAYNPTRDMTGHAERVLMTRASQAYTPERLNQCTMYTSAEPCAMCAGAAYWAG
IGRVVFGLSESQLKAMTGNHPENPTLDLPCRVVFEAGQRSVEVIGPLLSEEAAKLHDN
AWR"
misc_feature 76875..77183
/locus_tag="Avi_5084"
/note="Nucleoside deaminases include adenosine, guanine
and cytosine deaminases. These enzymes are Zn dependent
and catalyze the deamination of nucleosides. The zinc ion
in the active site plays a central role in the proposed
catalytic mechanism, activating a...; Region:
nucleoside_deaminase; cd01285"
/db_xref="CDD:29828"
misc_feature order(76929..76931,76980..76982,77013..77021,77103..77105,
77112..77114)
/locus_tag="Avi_5084"
/note="nucleoside/Zn binding site; other site"
/db_xref="CDD:29828"
misc_feature order(77007..77009,77022..77024,77034..77036,77106..77111,
77118..77123,77130..77135)
/locus_tag="Avi_5084"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29828"
misc_feature order(77013..77021,77100..77105,77112..77114)
/locus_tag="Avi_5084"
/note="catalytic motif [active]"
/db_xref="CDD:29828"
gene complement(77346..78086)
/locus_tag="Avi_5085"
/db_xref="GeneID:7381237"
CDS complement(77346..78086)
/locus_tag="Avi_5085"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_002546988.1"
/db_xref="GI:222106197"
/db_xref="GeneID:7381237"
/translation="MTVRSRTLETYEVLRHDLLNGRFIPGSKLKIDTLCRQLGVSPGA
VREALARLTSDGLVVAEAQRGFHVTPISIEDLQDLTEVRIEIELRCLRRSIAKGSLAW
EGHIKDISHQLHHTSMSDPDGSNTVSPAWTELHAAFHDALVLACDSRWWLKLRDSMFW
QVERYRRMAVPFMKEPRHVDIEHAEIAEAVLARDTELACSRLEAHLRKTSDLLLRLDG
PFEGLFSKPGSNVSHSLSQAGSPVPTST"
misc_feature complement(77412..78086)
/locus_tag="Avi_5085"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:31987"
misc_feature complement(77880..78056)
/locus_tag="Avi_5085"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature complement(order(77889..77900,77904..77909,77937..77939,
77946..77951,77955..77969,77991..77996))
/locus_tag="Avi_5085"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature complement(77466..77855)
/locus_tag="Avi_5085"
/note="This entry represents the C-terminal ligand binding
domain of many members of the GntR family; Region: FCD;
smart00895"
/db_xref="CDD:197963"
gene 78435..79988
/locus_tag="Avi_5086"
/db_xref="GeneID:7380899"
CDS 78435..79988
/locus_tag="Avi_5086"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(dipeptide)"
/protein_id="YP_002546989.1"
/db_xref="GI:222106198"
/db_xref="GeneID:7380899"
/translation="MGNVMKSKLGLLAKLAFALLPGLALLPGHGLAQDKGGVINVATI
GEPPTLDPMASTADLVGMTTQHIFETLFTFDDKWNVIPLLAEAMPTITDEGKTYDITL
RSGVKFHDGSVMTSADVVASIERWLATASRGKQVVAYIDKVTAEGDNAIRITLKKPYA
PLLSLLAFNNSAAVIIPKSTIADTLTKFIGTGPYMLKERKPDQYIQLVRFDGYTPRTD
AANGFGGARKAILDEIRFIPVPDANTRLEGAVSGQFDYTDSLAPESYDRLKGSKASDP
VVLKPYGAPVFVMNTKQGIMTSKTLRHAVQVALNPQDMLLAAFGNPEFFAVDGALYPE
GYAWHTKEGIARYGSGDPEAAAKLMKEAGYDGKPVRILTSRQYEFHYKMAQVAAEYLK
AAGFKVDLQIYDWATLTTRRADPALWDIFITHGPFPPEPVLNGWMSDSYPGWWSTPEK
TKAIEPFIAESDPAKRQKLFTEIQKTFYEDAPVFKVGDFNALSAKAKTLEGFHPSPWP
YFWNVSSKK"
misc_feature 78546..79940
/locus_tag="Avi_5086"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_16; cd08502"
/db_xref="CDD:173867"
misc_feature 78669..79766
/locus_tag="Avi_5086"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene 79990..81351
/gene="bgl"
/locus_tag="Avi_5087"
/db_xref="GeneID:7380900"
CDS 79990..81351
/gene="bgl"
/locus_tag="Avi_5087"
/codon_start=1
/transl_table=11
/product="beta-glucosidase"
/protein_id="YP_002546990.1"
/db_xref="GI:222106199"
/db_xref="GeneID:7380900"
/translation="MVLTFKVKKHIMSRSFPPDFLWGVAASAFQTEGAVHADGRGPSV
WDVYSHTPGRTTNGDTADIACDHYHRYPEDIALMRGLGVKAYRLSTAWPRIFPSGSGQ
VNQRGLDFYDRVIDLALHEGIEPWICLHHWDMPVAVEDNGGWRNRDTAKIFADYAAVI
TRHFGDRVKRFAPINEPNVIPWVAYNVGRHAPGKQDYPSSLQAIHTLNLAHGYTVSAV
RAEAPQAEVGNIVSLGPVRPHYDDAAHEEARILGDCLWRRVTVDPLWLGTYPEPIADA
MQPFIQPGDMEAISQKMDFFGLNHYNPVFVGPNENTTFGVSETAPPTGMGPLTDVNWV
VDPAAFLEQIRDTSARYGKPTIYITENGASYPDALGPDRKVIDNDRIAYFNGYLNALL
DALDEGHDIRGYFAWSLMDNFEWGRGYSKRFGLVYVDYPTLQRIPKQSYHWLSGVIAA
NAL"
misc_feature 80038..81318
/gene="bgl"
/locus_tag="Avi_5087"
/note="beta-galactosidase; Region: BGL; TIGR03356"
/db_xref="CDD:200266"
gene 81376..82317
/locus_tag="Avi_5088"
/db_xref="GeneID:7380901"
CDS 81376..82317
/locus_tag="Avi_5088"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002546991.1"
/db_xref="GI:222106200"
/db_xref="GeneID:7380901"
/translation="MISYIVKRLLGMIVVMFLVVTIVFIIVRVTPGDPAAVMLGPDAS
AQDVADLRSKLGLDQSLISQYVFYIGALLTGDLGRSIFLDMPVGAALLQRAEPTFFLT
LFALLIACLLALPIGIYAAYRRGSWLDQAVTAIAMLAASIPSFWLGLILMQFFAVKLQ
LFPVSGYGGPGTSFLERMYHLALPAIALGLVSSSLILRFTRASMLDVLGDDFVRTARA
KGLQERHVVLRHALKNALIPILTVVGLTAAVLISGAVVTETVFGLPGIGSLVVSAVLR
RDYPVIQGALLVIAGLYVLVNFAIDMLYLLIDPRVRY"
misc_feature 81376..82314
/locus_tag="Avi_5088"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 81718..82269
/locus_tag="Avi_5088"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(81718..81723,81736..81738,81769..81780,81784..81813,
81820..81825,81829..81831,81946..81951,81955..81957,
81961..81963,81970..81975,81979..81981,81991..81996,
82003..82005,82054..82056,82096..82101,82108..82110,
82129..82140,82147..82152,82186..82191,82219..82224,
82231..82236,82240..82245,82252..82257,82264..82269)
/locus_tag="Avi_5088"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(81787..81831,82129..82146)
/locus_tag="Avi_5088"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(81829..81831,81931..81933,82147..82149,82180..82182,
82189..82191,82219..82221)
/locus_tag="Avi_5088"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(82006..82044,82060..82065,82075..82077)
/locus_tag="Avi_5088"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 82317..83198
/locus_tag="Avi_5089"
/db_xref="GeneID:7380902"
CDS 82317..83198
/locus_tag="Avi_5089"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002546992.1"
/db_xref="GI:222106201"
/db_xref="GeneID:7380902"
/translation="MTQPISLEITPPPQSETLRFLRRLLRRKTVAIGLCILTIFVLLA
VLAPWIAPYSPYKLSIMNRIKPPSGTYWFGTDEFGRDVFSRTIYAGRLSLLVGASVVA
LSSLIGVTLGLLAGFFHRLDTPIARLIDAMMAFPDILLAIALVAALGPSLTTVIIALS
VVYAPRLARIVRASTLVIRELPYIEAARALGISTTHIMVRHVLRNLMSPILVQATFLF
ASAMLAEAGLSFLGVGVSPEIPTWGTMIAAGRQYVDQADWMTLFPGFAIILSVMSLQI
VGDGLRDMLDPRLQKDI"
misc_feature 82410..83189
/locus_tag="Avi_5089"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:31366"
misc_feature <82410..82520
/locus_tag="Avi_5089"
/note="N-terminal TM domain of oligopeptide transport
permease C; Region: OppC_N; pfam12911"
/db_xref="CDD:205142"
misc_feature 82635..83129
/locus_tag="Avi_5089"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(82635..82637,82644..82649,82662..82664,82689..82700,
82704..82733,82740..82745,82749..82751,82800..82805,
82809..82811,82815..82817,82824..82829,82833..82835,
82845..82850,82857..82859,82908..82910,82950..82955,
82962..82964,82983..82994,83001..83006,83046..83051,
83079..83084,83091..83096,83100..83105,83112..83117,
83124..83129)
/locus_tag="Avi_5089"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(82707..82751,82983..83000)
/locus_tag="Avi_5089"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(82749..82751,82785..82787,83001..83003,83040..83042,
83049..83051,83079..83081)
/locus_tag="Avi_5089"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(82860..82898,82914..82919,82929..82931)
/locus_tag="Avi_5089"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 83201..84412
/locus_tag="Avi_5090"
/db_xref="GeneID:7380903"
CDS 83201..84412
/locus_tag="Avi_5090"
/note="Catalyzes the reversible hydrolysis of the amide
bond within dihydroorotate. This metabolic intermediate is
required for the biosynthesis of pyrimidine nucleotides"
/codon_start=1
/transl_table=11
/product="dihydroorotase"
/protein_id="YP_002546993.1"
/db_xref="GI:222106202"
/db_xref="GeneID:7380903"
/translation="MLSPHQAQTPLLLKNLRPLAFGEATPPQAIDILIGADGKIIKVG
QNIALTEEAEVIDGKGAWISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGS
AGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAD
NSEHIVGLKVRASHVITGSWGVTPVKLGKKIAKILKIPMMVHVGEPPALYDEVLEILG
PGDVVTHCFNGKAGSSIMEDEDLYNLAERCAGEGIRLDIGHGGASFSFKVAEAAIKRG
LLPFSISTDLHGHSMNFPVWDLATTMSKLLSVGMPFEKVVEAVTHAPASVIRLSIQDR
LVPGARADFTIFDLVDSDLEATDSNGDVARLTQLFEPRHAVIGREAIAASRYIPRARK
LVRHSHGYSWR"
misc_feature 83231..84367
/locus_tag="Avi_5090"
/note="dihydroorotase; Provisional; Region: PRK09237"
/db_xref="CDD:181717"
misc_feature 83294..84313
/locus_tag="Avi_5090"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature order(83411..83413,83417..83419,83804..83806,83873..83875,
84053..84055)
/locus_tag="Avi_5090"
/note="active site"
/db_xref="CDD:30035"
gene 84452..84943
/locus_tag="Avi_5091"
/db_xref="GeneID:7380904"
CDS 84452..84943
/locus_tag="Avi_5091"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546994.1"
/db_xref="GI:222106203"
/db_xref="GeneID:7380904"
/translation="MTSPSTDAGLPTPYERLAALGIALPPSPPPIANFVTHVREGNLL
FLSGQGPREADGFLYSGKVGDDVTPQDAYRHARLTGINLIAVMHDALGDLARVRKIVK
MLGMVNATPDFRDHPQVINGCSDLFMEVFGQAGQHARSAVGFGSLPGNITVEIEVIVA
LHE"
misc_feature 84506..84931
/locus_tag="Avi_5091"
/note="This group of proteins belong to a large family of
YjgF/YER057c/UK114-like proteins present in bacteria,
archaea, and eukaryotes with no definitive function. The
conserved domain is similar in structure to chorismate
mutase but there is no sequence...; Region:
YjgF_YER057c_UK114_like_1; cd02199"
/db_xref="CDD:100006"
misc_feature order(84551..84556,84563..84565,84569..84571,84578..84580,
84584..84586,84590..84595,84746..84748,84752..84757,
84761..84763,84767..84769,84812..84814,84821..84823,
84833..84835,84857..84883,84911..84913,84917..84919,
84923..84925)
/locus_tag="Avi_5091"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100006"
misc_feature order(84551..84553,84800..84802,84812..84814,84866..84868,
84911..84913)
/locus_tag="Avi_5091"
/note="putative active site [active]"
/db_xref="CDD:100006"
gene complement(84955..85782)
/locus_tag="Avi_5093"
/db_xref="GeneID:7380905"
CDS complement(84955..85782)
/locus_tag="Avi_5093"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_002546995.1"
/db_xref="GI:222106204"
/db_xref="GeneID:7380905"
/translation="MMDSKARRVSVAADSQPVEATAERRSRVSGMDRALQVLDHLYET
GAPVGPYAIAKAVGAPLSTIYTIIDDLVEKNMLTRSGDGAIWLGPRLYHYGLAYSRSL
DFIGIATQEMHDLCREAGETVQVCGRDNDHMLVLAMAEGPSHFQVASRVGTRVPLNWT
ASGRLLVGHLPEKERMDLFAHCARSSPTGRAEVDARTLSDAAARAFQQRLSIQAGESD
YAVACIASPICDRDGVCVATISIVLPEQKAFSDGNPYVGHVKASAERIEKRMGWRGH"
misc_feature complement(84967..85698)
/locus_tag="Avi_5093"
/note="Transcriptional regulator [Transcription]; Region:
IclR; COG1414"
/db_xref="CDD:31604"
misc_feature complement(85540..85689)
/locus_tag="Avi_5093"
/note="IclR helix-turn-helix domain; Region: HTH_IclR;
pfam09339"
/db_xref="CDD:150115"
misc_feature complement(84976..85338)
/locus_tag="Avi_5093"
/note="Bacterial transcriptional regulator; Region: IclR;
pfam01614"
/db_xref="CDD:201890"
gene 85879..87075
/gene="selA"
/locus_tag="Avi_5094"
/db_xref="GeneID:7380906"
CDS 85879..87075
/gene="selA"
/locus_tag="Avi_5094"
/codon_start=1
/transl_table=11
/product="L-seryl-tRNA(ser) selenium transferase"
/protein_id="YP_002546996.1"
/db_xref="GI:222106205"
/db_xref="GeneID:7380906"
/translation="MTNDIRTQLGLRPVINVSGTMTSLGASIVVPEAIAAMTAILPQF
VEISDLQRKASAIIARLTGAEAGFITASCSAGISLAVAGTITGPDLLAIEKLPDVSTT
KNEVLVQMGHLVSYGAPVDQSIRLGGGKVVLVGQATSAHRYHMENAITENTAAAVYVV
SHHVVHYGLLHLKEFVEIAHARGVPVIVDAASEYDLRTFLDQGADIALYSGHKFLGGP
TSGIVAGRKELVRNAYLQNMGIGRGMKVGKESVFGVMAALEAWEKRDHASVRATEIGY
LHLWKDALDGRPGVTALIEPDPTHNPLDRLRVILSPQEAHISAYDLAGALARGNPPII
VRDHEAEHHYFYLDPCNLHPGQEVIVRDRLVEELDKARASNEVINTPHEEWGRHRFDS
MLRWPD"
misc_feature 85879..87006
/gene="selA"
/locus_tag="Avi_5094"
/note="Selenocysteine synthase [seryl-tRNASer selenium
transferase] [Amino acid transport and metabolism];
Region: SelA; COG1921"
/db_xref="CDD:32104"
misc_feature 85918..86886
/gene="selA"
/locus_tag="Avi_5094"
/note="L-seryl-tRNA selenium transferase; Region: SelA;
pfam03841"
/db_xref="CDD:112645"
misc_feature order(86443..86445,86452..86454,86506..86508,86515..86517)
/gene="selA"
/locus_tag="Avi_5094"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 86515..86517
/gene="selA"
/locus_tag="Avi_5094"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 87500..89038
/locus_tag="Avi_5096"
/db_xref="GeneID:7380907"
CDS 87500..89038
/locus_tag="Avi_5096"
/codon_start=1
/transl_table=11
/product="GGDEF family protein"
/protein_id="YP_002546997.1"
/db_xref="GI:222106206"
/db_xref="GeneID:7380907"
/translation="MYPWSELLANLAIVAITTSTWTFVRPHLAGQGARAFSLAFGCLM
AVGLLATMALPFRFTDGVFLDTRYTFLAISGFFGGPIAAFPPLIVGIIRRLMIGGMGI
TVGIPQIIAAACIGVVASRLLRGKIPTFPQIAALALLVAVSGVAGFFVVRPFEVWGNL
IVVTVGPFMVVLFGATLLSAVAMAQEMKRTRLESDLAAAQIRLADALATMADGLALFD
RDGVLVFTNQRYLDIFKETADVRVPGKNIREILRTSFERNEEARVESDVDPIIDRVVE
GLFRPSDRLIQLADGRSIEARTRVTGEGEAMIVYADITLHCQREARLHELNDRLSALA
DTDELTGLMNRRGLEASMDQAFDRAKGEGANIGLLLIDVDWFKAYNDTYGHPAGDKCL
QLVANTVHATSRSFAGSIVARYGGEELTVVLPNASISETEAVARLVCTAVRTLAIEHV
GSEKRIVTVSVGAANLKSMPGLRKTDLLLQADAALYAAKAAGRDCIQTAPDLLPVAKR
ADSR"
misc_feature 87611..88039
/locus_tag="Avi_5096"
/note="ECF-type riboflavin transporter, S component;
Region: ECF-ribofla_trS; cl01942"
/db_xref="CDD:211450"
misc_feature 88127..88462
/locus_tag="Avi_5096"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:205113"
misc_feature 88505..>88891
/locus_tag="Avi_5096"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(88613..88615,88748..88750)
/locus_tag="Avi_5096"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(88628..88630,88637..88642,88652..88654,88664..88666,
88736..88738,88742..88753)
/locus_tag="Avi_5096"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(88724..88726,88808..88810)
/locus_tag="Avi_5096"
/note="I-site; other site"
/db_xref="CDD:143635"
gene 89305..90198
/locus_tag="Avi_5097"
/db_xref="GeneID:7380908"
CDS 89305..90198
/locus_tag="Avi_5097"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002546998.1"
/db_xref="GI:222106207"
/db_xref="GeneID:7380908"
/translation="MTIFSVRHITSYRYKRPVEFGEHRLMFRPRDSFDQTLLSSHLDV
DPKPDYIRWIHDVFGNCVALVGFTGKARELCFGTNIRLDHTQQVEMDLQIDAEALHYP
FAYDPEEVVDLERTIKRHFADPDDEVGRWTRQFVRIGQPTETGRLLMTLCYAIHESFI
YARRLEHGTQTPLETLRLRRGTCRDFALLMMEAARSLGLAARFVTGYIYVPDRDGSTK
LGGGSTHAWCQVYLPGAGWVEFDPTNGIVGNRDLIRVGVARDPKQAVPLSGSYDGDAS
DFDTMSVQVNVTTDKLSDTAA"
misc_feature 89305..90135
/locus_tag="Avi_5097"
/note="Transglutaminase-like enzymes, putative cysteine
proteases [Amino acid transport and metabolism]; Region:
COG1305"
/db_xref="CDD:31496"
misc_feature 89311..89532
/locus_tag="Avi_5097"
/note="Bacterial transglutaminase-like N-terminal region;
Region: Bact_transglu_N; pfam08379"
/db_xref="CDD:149443"
misc_feature 89710..90030
/locus_tag="Avi_5097"
/note="Transglutaminase-like superfamily; Region:
Transglut_core; pfam01841"
/db_xref="CDD:202005"
gene 90294..91097
/locus_tag="Avi_5101"
/db_xref="GeneID:7380909"
CDS 90294..91097
/locus_tag="Avi_5101"
/codon_start=1
/transl_table=11
/product="Transglutaminase domain-containing protein"
/protein_id="YP_002546999.1"
/db_xref="GI:222106208"
/db_xref="GeneID:7380909"
/translation="MKIRAGFRIGYECQQETAMLLVLNIHPSRRTDLLQDQVLSFDRP
IEAWGYFDGFGNACSRIVAPPGVTTISTEFEIYDSGLPDPVPENAWQHDIKDLPDDVL
VFLLGSRYCDTDRLSDFAWKTFSFTPLGWPRVKAILDFVHNHITFNYQKADLLRTAFG
GFTDQTGVCRDFAHLAITLCRCMNIPARYCTGYLGDIGVPDDPNPMDFSAWFEVYLGG
RWHTVDARHNKPRIGRILMAIGRDATDVALSTAFGPAILTQFDVTTIEL"
misc_feature 90294..91085
/locus_tag="Avi_5101"
/note="Transglutaminase-like enzymes, putative cysteine
proteases [Amino acid transport and metabolism]; Region:
COG1305"
/db_xref="CDD:31496"
misc_feature 90690..90968
/locus_tag="Avi_5101"
/note="Transglutaminase-like superfamily; Region:
Transglut_core; pfam01841"
/db_xref="CDD:202005"
gene 91405..92076
/locus_tag="Avi_5102"
/db_xref="GeneID:7380910"
CDS 91405..92076
/locus_tag="Avi_5102"
/codon_start=1
/transl_table=11
/product="Permeases of the major facilitator superfamily"
/protein_id="YP_002547000.1"
/db_xref="GI:222106209"
/db_xref="GeneID:7380910"
/translation="MKLLKSLEELLYELVSWLLFYPLTMWRSVTRPLSMMRYADLELA
DRPEDQYDDTLSPPLFLLITLLLSQGLSTAFPSSYDTTVAAKELGSVSNLLIARGVLF
GIYPLCMAVTLLRRKSVRITRSSLRPPFFSQCYVAAPFAFIIGLAFDLMFMPDGHGVL
IGLLTLTAATLWYAQAEVRWFKRDLAIGGLKAIGAFTLAFLAATVVAFLLAITIGLEA
KTLTP"
gene 92361..92999
/locus_tag="Avi_5103"
/db_xref="GeneID:7380911"
CDS 92361..92999
/locus_tag="Avi_5103"
/codon_start=1
/transl_table=11
/product="oxidoreductase with iron-sulfur subunit"
/protein_id="YP_002547001.1"
/db_xref="GI:222106210"
/db_xref="GeneID:7380911"
/translation="MSNSNQMDLSRRDLLISSAVAAVVTGAGERSVAAQPAGDKMKLT
TPVTLNVNGARREIEVDNRTTLLDALREHLDLTGTKKGCDHGQCGACTVMVDGRRINA
CLTLAVMHEGDEITTIEGLGQPGHLHPMQAAFVKHDGFQCGYCTPGQICSSIAVLEEI
KANIPSHVTSDLNRSAQLTAIEIRERMSGNICRCGAYSNIVDAISEVGGIKA"
misc_feature 92361..92996
/locus_tag="Avi_5103"
/note="aldehyde oxidoreductase 2Fe-2S subunit;
Provisional; Region: PRK11433"
/db_xref="CDD:183134"
misc_feature 92499..>92648
/locus_tag="Avi_5103"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:29262"
misc_feature order(92595..92600,92607..92609,92616..92618,92622..92633)
/locus_tag="Avi_5103"
/note="catalytic loop [active]"
/db_xref="CDD:29262"
misc_feature order(92607..92609,92622..92624,92631..92633)
/locus_tag="Avi_5103"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29262"
misc_feature 92709..92972
/locus_tag="Avi_5103"
/note="[2Fe-2S] binding domain; Region: Fer2_2; pfam01799"
/db_xref="CDD:201981"
gene 92996..93946
/locus_tag="Avi_5106"
/db_xref="GeneID:7380912"
CDS 92996..93946
/locus_tag="Avi_5106"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002547002.1"
/db_xref="GI:222106211"
/db_xref="GeneID:7380912"
/translation="MKAFTFERAPSIEAAVKTAAANPDARFIAGGTNLLDLMKLEIET
PTHIIDVNGLGLDEIESTDDGGLRIGALVRNTDLAAHMTVRRDYGLLSRALVAGASGQ
LRNKATTAGNLLQRTRCPYFYDPNQPCNKRQPGSGCSAIGGFSRQHAVVGVSDACIAT
HPSDMAIAMRALDATIETVKADGSRRSIPIADFHRLPGETPHIESVLERGEFVTAVLL
PPPIGGKHIYRKVRDRASYAFALISVGAVIQADGTGRVAVGGVAHKPWRIEAAEAELP
RGARDAAKAILADARPTEQNRFKVDLVERTLGAVLSEARG"
misc_feature 92996..93943
/locus_tag="Avi_5106"
/note="Aerobic-type carbon monoxide dehydrogenase, middle
subunit CoxM/CutM homologs [Energy production and
conversion]; Region: CoxM; COG1319"
/db_xref="CDD:31510"
misc_feature 93677..>93820
/locus_tag="Avi_5106"
/note="CO dehydrogenase flavoprotein C-terminal domain;
Region: CO_deh_flav_C; smart01092"
/db_xref="CDD:198160"
gene 93950..96148
/locus_tag="Avi_5107"
/db_xref="GeneID:7380913"
CDS 93950..96148
/locus_tag="Avi_5107"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="YP_002547003.1"
/db_xref="GI:222106212"
/db_xref="GeneID:7380913"
/translation="MKFDTPATTNPIDRLKVVGQPIHRIDGQLKTTGRAMYAYEWRDP
NTRYAYGYPVGAAIAKGRIKAMDVTAARKADGVISVVTTLDVGKREKGKFNTANLFGG
DDVQHYHQAIAVVVAETFEQARAAAALVKVDYDEEKGTFDLSAARETAKKPDDSQKPD
TAVGDFETAFRTAPVTIEQSYTTPDQSHAMMEPHASIAAWDGDEVTVWTSSQMIDWWR
SDLATTLGVDKEKIHLMSPFIGGGFGGKLFLRADAVLAAFAARAAKRPVKVALPRPLV
INNTTHRPATIQRIRIGAERDGKITAIAHESWSGDLAGGGPEVAVNQTRLLYAGANRM
TAMRLATLDLPEGNAMRAPGEAPGLMALEIAMDEMAEKVGMDPIAFRIANDTQVDPEN
PERPFSHRDLIGCLKRGADRFGWDNRPKAGSRRQGNWLIGMGVAAAFRDNMVLPSGAR
VKLDNQGVVTVETDMTDIGTGSYTIIAQTAAEMMGIGVDKVAVHLGDSRFPISAGSGG
QFGANSATSGVYAACVKLREAITQKLGFNSDDIVFEDGVVKAGNRSVFLAEAAGPDGL
VGEDTMEWGDLTKTHQQSTFGAHFVEVGVDVATGETRIRRMLAVCAAGRILNPITARS
QVIGAMTMGAGGALSEELVVDAKRGFFVNHDLAGYEVPVHADIPHQEVIFMDETDPMS
SPMKAKGIGELGLCGVSAAIANAIYNATGVRVRHYPITLDKLIGGLPDIA"
misc_feature 93986..96139
/locus_tag="Avi_5107"
/note="Aerobic-type carbon monoxide dehydrogenase, large
subunit CoxL/CutL homologs [Energy production and
conversion]; Region: CoxL; COG1529"
/db_xref="CDD:31718"
misc_feature 94043..94360
/locus_tag="Avi_5107"
/note="Aldehyde oxidase and xanthine dehydrogenase, a/b
hammerhead domain; Region: Ald_Xan_dh_C; smart01008"
/db_xref="CDD:198076"
misc_feature 94382..95953
/locus_tag="Avi_5107"
/note="Molybdopterin-binding domain of aldehyde
dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738"
/db_xref="CDD:202368"
gene 96470..98164
/locus_tag="Avi_5108"
/db_xref="GeneID:7380914"
CDS 96470..98164
/locus_tag="Avi_5108"
/codon_start=1
/transl_table=11
/product="two-component sensor"
/protein_id="YP_002547004.1"
/db_xref="GI:222106213"
/db_xref="GeneID:7380914"
/translation="MIDFRNVMKTAFRIKAPVRSGRADEEFDTEKAQALVRIIIVTGA
ISYVLPAIIIGATPVEAWSVVPLLSYYFLFSLAAYWWIARWPGENRVRRAITITHDLG
ALTFTIAVGGQTFLPLFAIMLWVTVGNGLRFGPAYLKISTAATLAGIAIITYFNAYWR
ENPFMVLTLVATTVLVPAYIYALLGRLRKAYEIAQEASLSKSRFLAQASHDLRQPIHA
ISLFTACLRDANLQPKELQMVENIDRSLQSVSRLFKSLLDISTLDSGRVTPKYERIAI
AEVIDDVLRQNREAAQQSGITLRTVSCSAVVEIDRALLTTMVQNIVNNAIKYAAGRDV
VIGCRHRGGRLAVQICDQGPGIPRDHQVRVFEEFYQVRERGDKDIDGVGLGLPIVRRL
GRLLDIDVDLKSDPGKGTSVTLGNLHVTHKQEWSQSPLAAGHYPAAIDGLRILLVEDD
EAVLIATASLLRKWGCHVQAEATIPRHVGDFDLLITDFDLGGGVTGTECIQIVQDLIG
RQMPAVVMSGHDEGRVREDLGSADIPILSKPVRPAELRSVVMVAALETRRTRETNS"
misc_feature <97043..97711
/locus_tag="Avi_5108"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 97067..97249
/locus_tag="Avi_5108"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(97079..97081,97091..97093,97103..97105,97112..97114,
97124..97126,97133..97135,97181..97183,97193..97195,
97202..97204,97214..97216,97223..97225,97235..97237)
/locus_tag="Avi_5108"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 97097..97099
/locus_tag="Avi_5108"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 97409..97711
/locus_tag="Avi_5108"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(97427..97429,97439..97441,97448..97450,97514..97516,
97520..97522,97526..97528,97532..97537,97616..97627,
97673..97675,97679..97681,97694..97699,97703..97705)
/locus_tag="Avi_5108"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 97439..97441
/locus_tag="Avi_5108"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(97526..97528,97532..97534,97616..97618,97622..97624)
/locus_tag="Avi_5108"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 97799..98116
/locus_tag="Avi_5108"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 97802..98116
/locus_tag="Avi_5108"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(97811..97816,97928..97930,97955..97957,98018..98020,
98072..98074,98081..98086)
/locus_tag="Avi_5108"
/note="active site"
/db_xref="CDD:29071"
misc_feature 97928..97930
/locus_tag="Avi_5108"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(97937..97939,97943..97945,97949..97957)
/locus_tag="Avi_5108"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 98081..98089
/locus_tag="Avi_5108"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 98265..99164
/locus_tag="Avi_5109"
/db_xref="GeneID:7380915"
CDS 98265..99164
/locus_tag="Avi_5109"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002547005.1"
/db_xref="GI:222106214"
/db_xref="GeneID:7380915"
/translation="MNDYKALKVFLLAAEKRNFAQVARELDMTPAAVSRAIAALERDL
GVQLFVRTTRQVALTTDGAIFAAQVQPAVTALDSARRDIRNANKSDEGRLRISVPTWF
GKAMLPPILSGFRTLYPKMSFEISLSDGLVNIVDDDYDLAIRISSQPSDKFTIWRKIH
IVRRILVAAPASKFVDMRHPGELTPDDCLAYSGESRRENWVLSDGGSSMTISAGGAFS
ANSGEVLADMAADGAGVAMLPGFHVSEHLKTGRLVHVLRGWSPPDLWLTLYYPPYQAL
PPRIASFSKFFEEQVAAQMVTLN"
misc_feature 98271..99143
/locus_tag="Avi_5109"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 98277..98450
/locus_tag="Avi_5109"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 98538..99113
/locus_tag="Avi_5109"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA and its related
homologs, contains the type 2 periplasmic binding domain;
Region: PBP2_CrgA_like; cd08422"
/db_xref="CDD:176114"
misc_feature order(98568..98570,98580..98582,98697..98699,98742..98744,
98748..98750,98928..98930,98979..98981,99060..99062)
/locus_tag="Avi_5109"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176114"
misc_feature order(98571..98576,98586..98591,98595..98600,98607..98609,
98619..98621,98625..98645,98823..98825,98910..98924,
98943..98948,98955..98957)
/locus_tag="Avi_5109"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176114"
gene complement(99220..99906)
/locus_tag="Avi_5111"
/db_xref="GeneID:7380916"
CDS complement(99220..99906)
/locus_tag="Avi_5111"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547006.1"
/db_xref="GI:222106215"
/db_xref="GeneID:7380916"
/translation="MQLTPELVALTIRGVRDDGPEPGWTPLTEAELDELVDRIESEAG
GDPLLVFAYGSLIWNPEFEPASRQRATAYGWHRSFSLKIERWRATSTQPGLMLALERG
GQCDGIVFELSAERCRLDLRALVAREIKYREVRSMVRWVYVKTANGVQRALTFWASTS
RLGLTKPLPDEQSASLIASACGQGGSCAEYLHKTIVDLQAEGIRDRNLWRLQALVAAE
ITARHRAITQ"
misc_feature complement(99436..99759)
/locus_tag="Avi_5111"
/note="GGCT-like domains, also called AIG2-like family.
Gamma-glutamyl cyclotransferase (GGCT) catalyzes the
formation of pyroglutamic acid (5-oxoproline) from
dipeptides containing gamma-glutamyl, and is a dimeric
protein. In Homo sapiens, the protein is...; Region:
GGCT_like; cd06661"
/db_xref="CDD:119400"
misc_feature complement(order(99436..99438,99514..99516,99523..99528,
99739..99744,99748..99750,99757..99759))
/locus_tag="Avi_5111"
/note="putative active site pocket [active]"
/db_xref="CDD:119400"
misc_feature complement(order(99439..99441,99448..99450,99481..99483,
99487..99495,99511..99516,99604..99606,99616..99621))
/locus_tag="Avi_5111"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:119400"
misc_feature complement(99523..99525)
/locus_tag="Avi_5111"
/note="putative catalytic residue [active]"
/db_xref="CDD:119400"
gene complement(100041..101228)
/locus_tag="Avi_5112"
/db_xref="GeneID:7380917"
CDS complement(100041..101228)
/locus_tag="Avi_5112"
/codon_start=1
/transl_table=11
/product="non-heme haloperoxidase"
/protein_id="YP_002547007.1"
/db_xref="GI:222106216"
/db_xref="GeneID:7380917"
/translation="MHNRKSRRVRVNHRDAVVAETLSIISIIAIKSQLIMQLLARVFG
GNMPSSDKPSGLTTQKQTRPQDANMTDTTLLSLTRRGVLLSGSAVAATALTASFSFAA
KLAASTNTSTEGNKTMGTITTKDGVEIFYKDWGSKDAQPIVFHHGWPLSSDDWDAQML
FFLANGYRVIAHDRRGHGRSAQVSDGHDMDHYAADAFAVVEALDLKNAVHIGHSTGGG
EVARYVAMHGQPAGRVAKAVLVSAVPPLMLKTDANPEGLPMEVFDGFRSALAANRAQF
FRDVPAGPFYGFNRDDAKVQEGVIQNWWRQGMMGGAKAHYDGIKAFSETDQTEDLKTI
TVPTLVLHGEDDQIVPIADAALKAIKLLKNGTLKTYPGFSHGMLTVNADVLNADLLAF
VKS"
misc_feature complement(100044..100877)
/locus_tag="Avi_5112"
/note="Predicted hydrolases or acyltransferases
(alpha/beta hydrolase superfamily) [General function
prediction only]; Region: MhpC; COG0596"
/db_xref="CDD:30941"
misc_feature complement(100626..100853)
/locus_tag="Avi_5112"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
misc_feature complement(100044..>100292)
/locus_tag="Avi_5112"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene complement(101290..101853)
/gene="fabG"
/locus_tag="Avi_5113"
/db_xref="GeneID:7380918"
CDS complement(101290..101853)
/gene="fabG"
/locus_tag="Avi_5113"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-ACP reductase"
/protein_id="YP_002547008.1"
/db_xref="GI:222106217"
/db_xref="GeneID:7380918"
/translation="MQQACRLGETTRFQHPRENLNLADPATEAGANVLTAAVPKIDIL
INNLGIYESKDFSDITDDDWRRFFEINVLSGVRLSRHYMPDMLARNWGRIIFISSESG
VLVPPNMIHYGMTKTAQLAIASDPNLSADAMESEYFAKERPRSLIQRMIEPEEIANLV
AYVASPLSAATNGAALRVDGGITPTIV"
misc_feature complement(101317..>101754)
/gene="fabG"
/locus_tag="Avi_5113"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature complement(order(101506..101508,101518..101520,
101557..101559,101641..101643))
/gene="fabG"
/locus_tag="Avi_5113"
/note="active site"
/db_xref="CDD:212491"
gene 102248..102733
/gene="greB"
/locus_tag="Avi_5114"
/db_xref="GeneID:7380919"
CDS 102248..102733
/gene="greB"
/locus_tag="Avi_5114"
/note="activates RNA polymerase to cleave back-tracked RNA
during elongational pausing"
/codon_start=1
/transl_table=11
/product="transcription elongation factor regulatory
protein"
/protein_id="YP_002547009.1"
/db_xref="GI:222106218"
/db_xref="GeneID:7380919"
/translation="MSVAFTKEDSAETAAETLLPERPISPHPNLVTESGLKALERQRV
QARDAYDAARAIEDVNERRRQMAGPFRDLNYLEERLHTAQVMPDPITADSVSFGTTVT
FTRDDGRVQTYRIVGEDEADPKAGSISYVSPVARALIGKAVGDVVSLGDQELEITAIS
P"
misc_feature 102248..102727
/gene="greB"
/locus_tag="Avi_5114"
/note="transcription elongation factor regulatory protein;
Validated; Region: PRK06342"
/db_xref="CDD:180535"
misc_feature 102515..102730
/gene="greB"
/locus_tag="Avi_5114"
/note="Transcription elongation factor, GreA/GreB, C-term;
Region: GreA_GreB; pfam01272"
/db_xref="CDD:201702"
gene complement(102879..104240)
/gene="melA"
/locus_tag="Avi_5115"
/db_xref="GeneID:7380920"
CDS complement(102879..104240)
/gene="melA"
/locus_tag="Avi_5115"
/codon_start=1
/transl_table=11
/product="alpha-galactosidase"
/protein_id="YP_002547010.1"
/db_xref="GI:222106219"
/db_xref="GeneID:7380920"
/translation="MTKQPKITFIGAGSTVFMKNIIGDVLQRPALSGARIALMDINPQ
RLEESEVVARKLISTFGASATVETFADQRKALEGANFVVVAFQIGGYEPCTVTDFEVP
KKYGLRQTIADTLGVGGIMRGLRTVPHLWSICEDMMQVCPQAIMLQYVNPMAINTWAI
AEKYPAIKQVGLCHSVQGTAMELAEDLSIPYEDIRYRSAGINHMAFYLNFEHRQPDGS
YRDLYPDLLRGYREGRAPKPTWNPRCPNKVRYEMLTRLGYFVTESSEHFAEYTPYFIK
DGREDLIEKFGIPLDEYPKRCIEQVERWKDQAAAYRSADKIEVKPSKEYASSIINSVW
TGEPSVIYGNLRNNGCITSLPDNCAVEVPCLVDDNGIQPTTIGALPPQLTALMRTNIN
VQELTVAALINENPEHLYHAAMMDPHTAAELDLDQIWSLTTDLLKAHDQWIPQWARIG
GVA"
misc_feature complement(102900..104228)
/gene="melA"
/locus_tag="Avi_5115"
/note="alpha-galactosidase; Provisional; Region: PRK15076"
/db_xref="CDD:185035"
misc_feature complement(102933..104228)
/gene="melA"
/locus_tag="Avi_5115"
/note="Glycoside Hydrolases Family 4; Alpha-glucosidases
and alpha-galactosidases; Region:
GH4_alpha_glucosidase_galactosidase; cd05297"
/db_xref="CDD:133433"
misc_feature complement(order(103725..103727,103788..103790,
103794..103796,103854..103856,103893..103895,
103968..103973,103980..103988,104106..104108,
104118..104123,104199..104204))
/gene="melA"
/locus_tag="Avi_5115"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:133433"
misc_feature complement(order(103443..103445,103452..103454,
103632..103634,103722..103724,103788..103790,
103893..103895))
/gene="melA"
/locus_tag="Avi_5115"
/note="sugar binding site [chemical binding]; other site"
/db_xref="CDD:133433"
misc_feature complement(order(103632..103634,103722..103724))
/gene="melA"
/locus_tag="Avi_5115"
/note="divalent metal binding site [ion binding]; other
site"
/db_xref="CDD:133433"
misc_feature complement(order(103116..103127,103131..103133,
103137..103142,103197..103199,103233..103235,
103584..103586,103608..103610,103656..103658,
103665..103667))
/gene="melA"
/locus_tag="Avi_5115"
/note="putative tetramer (dimer of dimers) interface
[polypeptide binding]; other site"
/db_xref="CDD:133433"
misc_feature complement(order(102963..102965,102969..102971,
102975..102977,102981..102983,102996..103001,
103008..103013,103020..103022,103026..103028,
103044..103046,103056..103058,103065..103067,
103077..103079,103086..103088,103098..103103,
103437..103439,103473..103475))
/gene="melA"
/locus_tag="Avi_5115"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133433"
gene complement(104266..105933)
/locus_tag="Avi_5116"
/db_xref="GeneID:7380921"
CDS complement(104266..105933)
/locus_tag="Avi_5116"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(oligopeptide)"
/protein_id="YP_002547011.1"
/db_xref="GI:222106220"
/db_xref="GeneID:7380921"
/translation="MANTTNALAPDQRHDHTSLLGTPIIDARQLAVSFKVEGGTVEAV
KNVSFQLYRGETIAVVGESGSGKSVTARSIMGLLTKRATLSARSSIAYDGQNILKFSD
RQRRALRGNRISMIFQEPMSSLNPVYTIGTQIAEAIRVHQKMSSKQAFARTLELLRQV
QIPEPEARLNQYPHQLSGGQRQRIMIAMALANNPDVLIADEPTTALDVTVQAQILNLI
RDLQKSLGMAVILITHDLTVVRQFSDYVYVMQNGEVKEHNTTTALFEHPQHPYTRHLL
ASEPKGTANPMPVDSTTILEGRDVRVSFMLKHGGFFKPQLKELVAVNSLSITLHRHET
LGLVGESGSGKTTFGQALVKLMSVDSGKILFDGQAIENNSREQMRPLRSRIQVVFQDP
FSSLNPRMSVGQIIEEGLIVNNIGTSRSERLDRVREALISAGMPGNILSRFPHEFSGG
QRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIDLLRKLQDEKGLSYLFISHDLK
VVRALCHRVAVMQHGQIVEQGPVEDILSHPKTAYTQRLVRAAFNVAT"
misc_feature complement(104272..105867)
/locus_tag="Avi_5116"
/note="ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only]; Region: COG4172"
/db_xref="CDD:33913"
misc_feature complement(105160..105864)
/locus_tag="Avi_5116"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(105730..105753)
/locus_tag="Avi_5116"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(105232..105234,105331..105336,
105580..105582,105727..105735,105739..105744))
/locus_tag="Avi_5116"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(105580..105591)
/locus_tag="Avi_5116"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(105379..105408)
/locus_tag="Avi_5116"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(105331..105348)
/locus_tag="Avi_5116"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(105313..105324)
/locus_tag="Avi_5116"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(105226..105246)
/locus_tag="Avi_5116"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(<105040..105159)
/locus_tag="Avi_5116"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
misc_feature complement(104347..105054)
/locus_tag="Avi_5116"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(104896..104919)
/locus_tag="Avi_5116"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(104419..104421,104518..104523,
104764..104766,104893..104901,104905..104910))
/locus_tag="Avi_5116"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(104764..104775)
/locus_tag="Avi_5116"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(104566..104595)
/locus_tag="Avi_5116"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(104518..104535)
/locus_tag="Avi_5116"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(104500..104511)
/locus_tag="Avi_5116"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(104413..104433)
/locus_tag="Avi_5116"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(<104284..104358)
/locus_tag="Avi_5116"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene complement(105946..107067)
/locus_tag="Avi_5117"
/db_xref="GeneID:7380922"
CDS complement(105946..107067)
/locus_tag="Avi_5117"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547012.1"
/db_xref="GI:222106221"
/db_xref="GeneID:7380922"
/translation="MKADVQTIAMSSPANNLHSNETYLALVWRRLRRSWTGMMGLVLV
CLLMLMVVFAEFFAPVDPKLTGTAFAPPQTISITDQEGNLVWPRTYPLGESTALDPIT
FQPISGPDFENPVNLGFFVKGFSYNLFGLLPSDRHFFGATNGTPVNFLGTDKFGRDVL
SRIFYGSRVSLMIALTVVFIVTVVGTTVGLVSGYYGGQFDTWMQRFVELVLAFPQLPL
YLALTSLIPVTAPTNVFLGFVIVVMSALGWAQMSREVRGKTLALARIDYVRAAMAIGA
TDRRIILQHIFPNVMSHVIVSVTLAIPSVVLLESFLGFLGFAVKPPLISWGLMLQDTS
TYSVIGSYPWILSPVAFVLITVFAFNALGDGLRDAVDPY"
misc_feature complement(105952..>106638)
/locus_tag="Avi_5117"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:31366"
misc_feature complement(105970..106473)
/locus_tag="Avi_5117"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(105970..105975,105982..105987,
105994..105999,106003..106008,106015..106020,
106081..106086,106126..106131,106138..106149,
106168..106170,106177..106182,106222..106224,
106273..106275,106282..106287,106297..106299,
106303..106308,106315..106317,106321..106323,
106327..106332,106399..106401,106405..106410,
106417..106446,106450..106461))
/locus_tag="Avi_5117"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(106132..106149,106399..106443))
/locus_tag="Avi_5117"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(106018..106020,106081..106083,
106090..106092,106129..106131,106345..106347,
106399..106401))
/locus_tag="Avi_5117"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(106201..106203,106213..106218,
106234..106272))
/locus_tag="Avi_5117"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(107064..108077)
/locus_tag="Avi_5118"
/db_xref="GeneID:7380923"
CDS complement(107064..108077)
/locus_tag="Avi_5118"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547013.1"
/db_xref="GI:222106222"
/db_xref="GeneID:7380923"
/translation="MFRFLLVRIASAIPVLFVLSVVTFAIIKAPPGDYSDYIRSQMIN
QGGASFEAADAQAQAYKIANGLDKPIPIQYINWITGIVTRGDFGHSLFYNKPVSEVVG
ERLPRTLALALVCHILASIIGITFGILAATRQYTWVDSLLSGISFLGMTVPRFLMALI
IVYIMVFHFNATEINSFNSAKYGGAPWSFAKFLDLLQHVWPVIAIATFGGLAYNMRVM
RGNLLDTLNAQYVETARAKGLSERQVILRHAVPNALHPLIMYQGVVLPYMLTGEIETA
IIFALPTVGPAIVGSMWVGDVYVTATFMLVLSATLIVGNIIADMLLALLDPRVRLGGG
AHA"
misc_feature complement(107079..108077)
/locus_tag="Avi_5118"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature complement(107127..107765)
/locus_tag="Avi_5118"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(107127..107132,107139..107144,
107151..107156,107160..107165,107172..107177,
107205..107210,107247..107252,107259..107270,
107289..107291,107298..107303,107343..107345,
107394..107396,107403..107408,107421..107423,
107427..107432,107439..107441,107445..107447,
107451..107456,107592..107594,107598..107603,
107610..107639,107643..107654,107685..107687,
107700..107705,107712..107717))
/locus_tag="Avi_5118"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(107253..107270,107592..107636))
/locus_tag="Avi_5118"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(107175..107177,107205..107207,
107214..107216,107250..107252,107469..107471,
107592..107594))
/locus_tag="Avi_5118"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(107322..107324,107334..107339,
107355..107393))
/locus_tag="Avi_5118"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(108151..110238)
/gene="agpA"
/locus_tag="Avi_5120"
/db_xref="GeneID:7380924"
CDS complement(108151..110238)
/gene="agpA"
/locus_tag="Avi_5120"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(alpha-galactoside)"
/protein_id="YP_002547014.1"
/db_xref="GI:222106223"
/db_xref="GeneID:7380924"
/translation="MKSVTHTAKTAALLLGVSVFAVAAFASEPTVVPEAPPFPGQGKI
TYVPRDSIEEFKALPSYSEPDWVTEKFVKTGKLPSVKERLPKEPLVFKTGNMPDGIGV
YGDTLRHVIGGRPEGWNYSAGQTQGWGGIDIAMSECLTRTAPLFQVKADDVEPLPNLA
KSWDWSADGHKLTMHLIEGAKWSDGVPFTSDDVMFYWNDNVLDRNVTPLNGATPETFG
EGTTLKAIDDYTVEWTFKEAFPRQYLFAMAYGTFCPGPAHILKTKHPKYARDFTYDQY
KNGFPPEYMNIPVMGAWVPVSYRPDDMIVLRRNPYYWKVDEQGHQLPYINELHYKLST
WADRDVQAIAGSGDLSNLEQPENFVESLKRAAQPSAPSRLAFGARLIGYNLRLNYSAN
GWGDPDARGQAVRELNRNPDFRKAITMALDRKKIGESLVKGPFTAIYPGGLSSGTSFY
DRQSTIYYPFDLAGAKALLAKAGLKDTDGDGFVNFPAGVAGGQDVQIVLLSTSDYGTD
RNLAEGVIGQMEKLGLKVVLNSLDGVKRDQANFGGRFDWMIRRNDPDMTSVVQNTAQL
APTGPRTSGHHRAGKDGTVDLMPYEKQLVAIVNRFIASQDNVERRDLMKQYQKIATEN
VDTIGLTEYPGALIINKRFSNVPVGAPIFMFNWAEDTIIRERMFVAADKQGDFELFKN
QLPGKPGENKPLN"
misc_feature complement(108301..109986)
/gene="agpA"
/locus_tag="Avi_5120"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_4; cd08500"
/db_xref="CDD:173865"
misc_feature complement(108565..109779)
/gene="agpA"
/locus_tag="Avi_5120"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene complement(110353..111825)
/gene="melA"
/locus_tag="Avi_5121"
/db_xref="GeneID:7380925"
CDS complement(110353..111825)
/gene="melA"
/locus_tag="Avi_5121"
/codon_start=1
/transl_table=11
/product="alpha-galactosidase"
/protein_id="YP_002547015.1"
/db_xref="GI:222106224"
/db_xref="GeneID:7380925"
/translation="MSSFKIAIIGAGSVGFTKKLFADLLSVPEFHDVEFALTDISQHN
LDMIKTILDRIVEANRLPAKVTASTDRRDAISGARYIISCVRVGGLGAYADDISIPLK
YGVDQCVGDTICAGGILYGQRNIPVILDFCKDIRELAEPGAKFLNYANPMAMNTWAAI
EYGKVDTIGLCHGVQHGAEQIAEILGADPVELDYICSGINHQTWFVDVRVKGRKIGKQ
ELIDAFEAHPVFSQQEKLRIDVLKRFGVYSTESNGHLSEYLPWYRKRPEEITRWIDMS
DWIHGETGGYLRYSTETRNWFETEFPQFLESAGKPHDPAKRSNEHASHILEALETGRV
YRGHFNVKNNGIITNLPLDAIIESPGFVDRFGINMVAGITLPEACAATCISSINVQRM
SVHAAISGDIDLLKLAVLHDPLVGAICTPEEVWQMVDEMVVAQAEWLPQYAHAIPEAK
ERLSRGTVKTRDWKGVARRDVRSIDELRAEKEATKLKAAS"
misc_feature complement(110497..111819)
/gene="melA"
/locus_tag="Avi_5121"
/note="alpha-galactosidase; Provisional; Region: PRK15076"
/db_xref="CDD:185035"
misc_feature complement(110530..111816)
/gene="melA"
/locus_tag="Avi_5121"
/note="Glycoside Hydrolases Family 4; Alpha-glucosidases
and alpha-galactosidases; Region:
GH4_alpha_glucosidase_galactosidase; cd05297"
/db_xref="CDD:133433"
misc_feature complement(order(111316..111318,111376..111378,
111382..111384,111445..111447,111484..111486,
111556..111561,111568..111576,111694..111696,
111706..111711,111787..111792))
/gene="melA"
/locus_tag="Avi_5121"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:133433"
misc_feature complement(order(111064..111066,111073..111075,
111223..111225,111313..111315,111376..111378,
111484..111486))
/gene="melA"
/locus_tag="Avi_5121"
/note="sugar binding site [chemical binding]; other site"
/db_xref="CDD:133433"
misc_feature complement(order(111223..111225,111313..111315))
/gene="melA"
/locus_tag="Avi_5121"
/note="divalent metal binding site [ion binding]; other
site"
/db_xref="CDD:133433"
misc_feature complement(order(110713..110724,110728..110730,
110734..110739,110794..110796,110830..110832,
111190..111192,111199..111201,111247..111249,
111256..111258))
/gene="melA"
/locus_tag="Avi_5121"
/note="putative tetramer (dimer of dimers) interface
[polypeptide binding]; other site"
/db_xref="CDD:133433"
misc_feature complement(order(110560..110562,110566..110568,
110572..110574,110578..110580,110593..110598,
110605..110610,110617..110619,110623..110625,
110641..110643,110653..110655,110662..110664,
110674..110676,110683..110685,110695..110700,
111058..111060,111094..111096))
/gene="melA"
/locus_tag="Avi_5121"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133433"
gene 112016..112960
/gene="agpT"
/locus_tag="Avi_5122"
/db_xref="GeneID:7380926"
CDS 112016..112960
/gene="agpT"
/locus_tag="Avi_5122"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_002547016.1"
/db_xref="GI:222106225"
/db_xref="GeneID:7380926"
/translation="MGNSVLKMMIDAGPIMRTVSLPRGRHSLHTMPTSTGYEVRSDAT
YDWDGRKRGQTPFTVLQHTISGAGNLRYENSTYRVTPGQTLLVLVPHNHRYWLEPGGR
WEFFWISMNGEEALRIHNAILTAMGPIFNLNQQTVEHLADCSQRLIAGGAETPGRASA
IAYEAAMALYDDVFGSHPTLSAEYRTMQHVIDHISANLDQSLSVEQLAAVSGLSRAHF
SRVFAASEGMPPAEFVLHKRLKRAVKLLTKGSHLSVKEISTMCGFEEPNYFSKVFRRH
FGASPTEFRTTGMYSSILQGGVEAETKPARFHRPDVNE"
misc_feature 112121..112513
/gene="agpT"
/locus_tag="Avi_5122"
/note="AraC-like ligand binding domain; Region:
AraC_binding; pfam02311"
/db_xref="CDD:145456"
misc_feature 112619..112870
/gene="agpT"
/locus_tag="Avi_5122"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature 112763..112873
/gene="agpT"
/locus_tag="Avi_5122"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene complement(113066..113461)
/locus_tag="Avi_5123"
/db_xref="GeneID:7380927"
CDS complement(113066..113461)
/locus_tag="Avi_5123"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547017.1"
/db_xref="GI:222106226"
/db_xref="GeneID:7380927"
/translation="MKRYILSAVALAALAGTAFAQQPPAPPQPPAPPVAGAMAPDADA
GTPPPPPPGMPGGPEERAGPPPRGPEGPMGPRGHRPPPPPAPSKAAHFRVEDGDTRID
IKCADDEPMKACADILLQVIDRLNGPAHP"
gene complement(113531..114028)
/locus_tag="Avi_5124"
/db_xref="GeneID:7380928"
CDS complement(113531..114028)
/locus_tag="Avi_5124"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547018.1"
/db_xref="GI:222106227"
/db_xref="GeneID:7380928"
/translation="MMTVEHPSDEHPEKAGRPAPPHGRRKRYWMALPAIAVALAIGAV
GGAGAMKLVRPAPEMAPMSPVAISTMPTSSLVTIKGKVSEIYGNKFILQDDSGKTLVE
TGPAGDGGGLVKKDDVVTIQGRFDDGVVHASYLVDSSGKTAALGPPGPPPHRPFGDFA
NKPAP"
gene 114274..114942
/gene="phoP"
/locus_tag="Avi_5125"
/db_xref="GeneID:7380929"
CDS 114274..114942
/gene="phoP"
/locus_tag="Avi_5125"
/codon_start=1
/transl_table=11
/product="two component response regulator"
/protein_id="YP_002547019.1"
/db_xref="GI:222106228"
/db_xref="GeneID:7380929"
/translation="MRVLLVEDDEDLSGRIATALRSENFVVDIARNGEDALHAGLTEL
FDIAVLDLGLPKIDGVTVLKGWRESERNLPVLVLTARDGWPDKVSSFKAGADDFLAKP
FKIEELVLRLRALVRRATGHASSRIQCGALMFDAQLGTFELNGLPVKLTALEWRVLSC
LMLRKEMVVDRRELNERVYDGDAEVDSNSIEVIIARLRKKLGSEIIETVRGRGYMLTA
PVQS"
misc_feature 114274..114939
/gene="phoP"
/locus_tag="Avi_5125"
/note="DNA-binding transcriptional regulator BasR;
Provisional; Region: PRK10643"
/db_xref="CDD:182612"
misc_feature 114283..114594
/gene="phoP"
/locus_tag="Avi_5125"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(114292..114297,114424..114426,114448..114450,
114508..114510,114565..114567,114574..114579)
/gene="phoP"
/locus_tag="Avi_5125"
/note="active site"
/db_xref="CDD:29071"
misc_feature 114424..114426
/gene="phoP"
/locus_tag="Avi_5125"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(114433..114438,114442..114450)
/gene="phoP"
/locus_tag="Avi_5125"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 114574..114582
/gene="phoP"
/locus_tag="Avi_5125"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 114652..114921
/gene="phoP"
/locus_tag="Avi_5125"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(114724..114726,114781..114786,114838..114840,
114847..114849,114871..114876,114895..114897,
114910..114912)
/gene="phoP"
/locus_tag="Avi_5125"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 114939..116309
/gene="phoQ"
/locus_tag="Avi_5126"
/db_xref="GeneID:7380930"
CDS 114939..116309
/gene="phoQ"
/locus_tag="Avi_5126"
/codon_start=1
/transl_table=11
/product="two component sensor kinase"
/protein_id="YP_002547020.1"
/db_xref="GI:222106229"
/db_xref="GeneID:7380930"
/translation="MTFPTLNRPKSIAGRLLIFSGVFVTLALVVASVVLWLALKTVIR
EQIDQRLDTQISALASAVVRDEGGRLTLSTPLDAPPFDRPGSGWYWQIESMGQQLTSR
SLLGGTIDTPPLSQDFFQMITATPTPGEGHDHGKKLYLRQSTRDVGGAIMTITVSAPQ
AALADPAIRALLWLAPSMLLLGAVLMIGTLWQIRFGLRPLTSMAADIDAINRGERSRL
PDMPIIELAPLASKTNALIEANDERLAATRIQFANLAHGLKTPVASLLLALDSGNDQD
GSLRDLVAKIDNRIKHHLSAARRVMASANIVARTNVAQSIADVYGAISLIHADRGIIF
QTEVADGLCVACDDKDVEEMFGNLIDNAFKWASEHVSVLAERDGPMVRISVEDDGPGI
PLERLHTVLLPGVREDERVPGDGFGLTIVTEMAGLYGGSFELERLAPTGLRAVLALPA
AKGSVQ"
misc_feature 115494..116291
/gene="phoQ"
/locus_tag="Avi_5126"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 115989..116282
/gene="phoQ"
/locus_tag="Avi_5126"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(116007..116009,116019..116021,116028..116030,
116091..116093,116097..116099,116103..116105,
116109..116114,116181..116192,116238..116240,
116244..116246,116259..116264,116268..116270)
/gene="phoQ"
/locus_tag="Avi_5126"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 116019..116021
/gene="phoQ"
/locus_tag="Avi_5126"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(116103..116105,116109..116111,116181..116183,
116187..116189)
/gene="phoQ"
/locus_tag="Avi_5126"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 116429..117037
/locus_tag="Avi_5127"
/db_xref="GeneID:7380931"
CDS 116429..117037
/locus_tag="Avi_5127"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaJ family"
/protein_id="YP_002547021.1"
/db_xref="GI:222106230"
/db_xref="GeneID:7380931"
/translation="MTSDSKIFVGLRSTRKKPAPDRGSTGPKCQWDGCEKGGTHRAPV
GQIAEGLYLLFCADHVKTYTKGYNFAPNLSDPVTARYQKDAASGKLQTWGTSVNKPSE
IPLPSTARSGSAKATNARKSAAQRQAEKLDIQRRKLKVLEAKAFETLGLSPDATPEEI
RSRYKQKLKMHHPDANNGDRNSEDKLQASIDAHKILKLNGFC"
misc_feature 116864..117019
/locus_tag="Avi_5127"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(116942..116950,116975..116977,116984..116989,
116996..117001)
/locus_tag="Avi_5127"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
gene complement(117104..118117)
/locus_tag="Avi_5128"
/db_xref="GeneID:7380932"
CDS complement(117104..118117)
/locus_tag="Avi_5128"
/codon_start=1
/transl_table=11
/product="zinc-binding dehydrogenase"
/protein_id="YP_002547022.1"
/db_xref="GI:222106231"
/db_xref="GeneID:7380932"
/translation="MKALICEEPGRLSLIERAPPPRAENEVLVRIRHVGICGTDFHIY
AGKHPFLEYPRVMGHELSGTVAEAPAGSHLKTGDAVYIVPYLSCGACHACRKGLSNAC
QNIRVLGVHCDGGMAEYVSVPEENVVPTGGISLADAAMIEFLAIGAHGVKRGNIQQQD
RVLVTGAGPIGMSAIIFAKARGAHVTVMDTREDRLAFAVDRLMADQSLFADTSAEAEV
ERMTGGDGFDVVIDATGNAIPMQRGFNFLAHGARYVLLSVVRQDITFSDPEFHKREAT
LIASRNAQPDDFAEVVRQIEAGKVPTRALNTHTGHLDDSVKLFKEWSQPQAGVIKAIL
EIG"
misc_feature complement(117110..118117)
/locus_tag="Avi_5128"
/note="Alcohol dehydrogenases of the MDR family; Region:
Zn_ADH7; cd08261"
/db_xref="CDD:176222"
misc_feature complement(117113..118117)
/locus_tag="Avi_5128"
/note="Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only]; Region: Tdh; COG1063"
/db_xref="CDD:31263"
misc_feature complement(order(117272..117280,117347..117352,
117410..117412,117416..117421,117491..117493,
117536..117538,117548..117553,117605..117622,
117680..117682,117692..117694,117992..117994,
118001..118009))
/locus_tag="Avi_5128"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:176222"
misc_feature complement(order(117692..117694,117938..117943,
118007..118009))
/locus_tag="Avi_5128"
/note="catalytic Zn binding site [ion binding]; other
site"
/db_xref="CDD:176222"
misc_feature complement(order(117812..117814,117836..117838,
117845..117847,117854..117856))
/locus_tag="Avi_5128"
/note="structural Zn binding site [ion binding]; other
site"
/db_xref="CDD:176222"
gene complement(118171..119460)
/locus_tag="Avi_5129"
/db_xref="GeneID:7380933"
CDS complement(118171..119460)
/locus_tag="Avi_5129"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547023.1"
/db_xref="GI:222106232"
/db_xref="GeneID:7380933"
/translation="MTRITDLNVFDLRFPTSASLDGSDAMNPDPDYSAAYVVLETDEP
GLEGHGLTFTIGRGNDICCMAIKAMRHLVVGVDLDEVRAAPGKFWRKLTGDSQLRWIG
PDKGAMHLATGAVVNAFWDAMAKQAGLPVWQFVSTMSPEEIADIVDYRYLTDALTREE
AVAILRKAEDGKADRIALLERQGYPCYTTSAGWLGYDDDKLRRLAQDAIDQGFNHIKM
KVGRDLEDDIRRLTIAREVIGPDRYLMVDANQVWEVGQAIDWMKKLAFAKPFFIEEPT
SPDDVAGHRKIRDAIAPIKVATGEMCQNRIMFKQFITEGAIDIVQIDSCRMGGLNEVL
AVLLLAAKYEKPVWPHAGGVGLCEYVQHLSMIDYIAVSGTREGRVIEYVDHLHEHFID
PCVIRNAAYMPPSRPGFSIEMKPESIAAYTFPTSKAV"
misc_feature complement(118192..119457)
/locus_tag="Avi_5129"
/note="L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope biogenesis,
outer membrane / General function prediction only];
Region: COG4948"
/db_xref="CDD:34556"
misc_feature complement(118219..119457)
/locus_tag="Avi_5129"
/note="Human rTS beta is encoded by the rTS gene which,
through alternative RNA splicing, also encodes rTS alpha
whose mRNA is complementary to thymidylate synthase mRNA.
rTS beta expression is associated with the production of
small molecules that appear to...; Region:
rTSbeta_L-fuconate_dehydratase; cd03324"
/db_xref="CDD:48199"
misc_feature complement(order(118318..118320,118411..118413,
118492..118494,118561..118563,118642..118644,
118648..118650,118720..118722,118804..118806,
118810..118812,118900..118902))
/locus_tag="Avi_5129"
/note="putative active site pocket [active]"
/db_xref="CDD:48199"
misc_feature complement(order(118561..118563,118642..118644,
118720..118722))
/locus_tag="Avi_5129"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:48199"
gene complement(119703..120515)
/locus_tag="Avi_5130"
/db_xref="GeneID:7380934"
CDS complement(119703..120515)
/locus_tag="Avi_5130"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547024.1"
/db_xref="GI:222106233"
/db_xref="GeneID:7380934"
/translation="MIIDAHQHFWLMKNRQGQWPPPELATIHRDFGTVDLEPQLSATG
VGGTVLVQSLPSIDDTRFLLDLAQHHDFILGVVGWVDLKAADAATLITELATYPKLKG
LRPMVQDIAEDDWIDDPALDPAIGAMLASGLTFDALVLPRHLAPLERFARRYPALPVV
IDHGAKPVIAQGLYSDWRTAMTRLADLENISCKLSGLLTEAGAQQPEAIRPYAETILE
LFGPERVMWGSDWPVLNLVSDYDSWFAQARAIVPEAAHDRVFCENARRFYGL"
misc_feature complement(119706..120515)
/locus_tag="Avi_5130"
/note="Predicted metal-dependent hydrolase of the
TIM-barrel fold [General function prediction only];
Region: COG3618"
/db_xref="CDD:33417"
misc_feature complement(119706..120509)
/locus_tag="Avi_5130"
/note="Amidohydrolase; Region: Amidohydro_2; pfam04909"
/db_xref="CDD:203119"
misc_feature complement(order(119826..119828,120027..120029,
120132..120134,120492..120494,120498..120500))
/locus_tag="Avi_5130"
/note="active site"
/db_xref="CDD:30035"
gene complement(120518..121522)
/locus_tag="Avi_5131"
/db_xref="GeneID:7380935"
CDS complement(120518..121522)
/locus_tag="Avi_5131"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002547025.1"
/db_xref="GI:222106234"
/db_xref="GeneID:7380935"
/translation="MQVNDRRKLRNRDVSFTVMGLGCAQMGNLYRWTSYQEALGAFDA
AWDAGIRYFDTAPFYGYTRSERRLGTMLTEHERANYVLSTKVGRVMVPDETVGPEEDT
YIQPLPFRPVYDYTYDAILKSFEASQQRTGVLKPDILYVHDIGQMTHGAKHGHYWEQL
TKGGGFKALGQLRDAGLVKAIGLGVNEWQAVWDAMDAFDIDVAMLAGRYTLLEQDSLT
LLDRAEKANVGIVVAGVFNSGLLAGNRKFNYAEAPADILARVAEIEAACAAEGVSLQA
AALNFPLLHPAVVSVVSGVRNAEQIRANVAWMQEDVPSSVWRSLKDKGIIADGVPIGV
"
misc_feature complement(120557..121507)
/locus_tag="Avi_5131"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature complement(120563..121504)
/locus_tag="Avi_5131"
/note="Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion];
Region: Tas; COG0667"
/db_xref="CDD:31011"
misc_feature complement(order(120611..120616,120623..120625,
120638..120649,120698..120700,120809..120826,
120905..120907,120968..120973,121094..121099,
121268..121270,121346..121348,121361..121363,
121451..121459))
/locus_tag="Avi_5131"
/note="active site"
/db_xref="CDD:119408"
misc_feature complement(order(121097..121099,121268..121270,
121346..121348,121361..121363))
/locus_tag="Avi_5131"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene complement(121592..122533)
/gene="rbsB"
/locus_tag="Avi_5133"
/db_xref="GeneID:7380936"
CDS complement(121592..122533)
/gene="rbsB"
/locus_tag="Avi_5133"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(ribose)"
/protein_id="YP_002547026.1"
/db_xref="GI:222106235"
/db_xref="GeneID:7380936"
/translation="MRKLALALAASVFTLSGALTASAGEIAVIVKTVNSTFWQNVQKG
ADAAIGKQKAHTITFQGPAAESAIADQVNMVENAVNRKVDAILLAPSDPDALVPAVKK
AWEARIPVVIIDSMLSKDAEKYYQAFLATDNKAAGELAAKAMIQKVGTEGKIAVMSYV
AGAGSEIGRVGGFTDYIKANSKLQIVGPYYSQSQMATALNQTTDVLAANADLKGIFGA
NEPTAIGMGRAIKQAGKAGKLVAIGFDGNQDLQEFVKDGTLEATVVQGSYQMGEKGVD
TLLKLLSKEKVEKFIDTGVVVVTKQNIDKPEAKNVLY"
misc_feature complement(121631..122461)
/gene="rbsB"
/locus_tag="Avi_5133"
/note="Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems; Region:
PBP1_ABC_sugar_binding_like_2; cd06310"
/db_xref="CDD:107305"
misc_feature complement(121703..122458)
/gene="rbsB"
/locus_tag="Avi_5133"
/note="Periplasmic binding protein domain; Region:
Peripla_BP_4; pfam13407"
/db_xref="CDD:205585"
misc_feature complement(order(121739..121741,121799..121801,
122027..122029,122192..122194,122423..122425))
/gene="rbsB"
/locus_tag="Avi_5133"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107305"
gene complement(122632..123681)
/gene="rbsC"
/locus_tag="Avi_5134"
/db_xref="GeneID:7380937"
CDS complement(122632..123681)
/gene="rbsC"
/locus_tag="Avi_5134"
/codon_start=1
/transl_table=11
/product="ribose ABC transporter permease"
/protein_id="YP_002547027.1"
/db_xref="GI:222106236"
/db_xref="GeneID:7380937"
/translation="MAEIITDKPPQADQKKGHKRGLSDRQKDIIQKFAALGCLVVLAA
VFALTSNAFLSVNNGMTIALQVTSIAFLGIGATYVIITGGIDLSVGSVLALAGVVAAL
AVKELGAPVWIGMVLGVLTGTACGVINGLVITRLKLPPFIATLGMMLIARGVALQITG
ARAVSGLGESFGVLGNGSLLRFESIDDQGFPVVSFPGIPYPVVLMVVIAVAAAFVLNR
TVLGRHIYATGSNADAAQLSGVNVARVTAFTYIVSGTLAGLTGCMLMSRLVTAQPNEG
VAYELDAIASAVIGGTSLIGGVGTISGTFIGAFVIGILRNGLNMNGVSAFTQQIIIGL
VILGTVWIDQIRNRK"
misc_feature complement(122653..123477)
/gene="rbsC"
/locus_tag="Avi_5134"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature complement(122929..122985)
/gene="rbsC"
/locus_tag="Avi_5134"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene complement(123674..125248)
/gene="rbsA"
/locus_tag="Avi_5135"
/db_xref="GeneID:7380938"
CDS complement(123674..125248)
/gene="rbsA"
/locus_tag="Avi_5135"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(ribose)"
/protein_id="YP_002547028.1"
/db_xref="GI:222106237"
/db_xref="GeneID:7380938"
/translation="MGGVSLAAGECKPAPLLLKLEGVTKEFPGVKALQDVSLDVRAGE
VHAVCGENGAGKSTLMKIISGVYQRDAGNMIYKGETVHFTSTLQSEAAGIAIIHQELN
LVPHLSVAENIYLAREPRLSFIGGDFMVNRRKLRQDAKRCLDRLGVDINPDAQVRTLS
VAQRQMVEIAKALSLNASVLIMDEPTSSLTQQEAQLLFRVIRDLKREGTGIIYISHRL
DEMAEIVDRVTVLRDGRYISTDDFDAITVDYIVARMVGRSLEEKFPAPTRSPSKDTIF
SVSGLTRHGVFSDIGFELRRGEILGFAGLMGAGRTEVARAIFGADPFDSGTLLLEGRP
LSISDPRSAIDAGLAYLSEDRKAGGLAVKMPVDANLMMANMEAVSNPFGVIDKELHRQ
SSQHYVNLLNIKTPSLNQPVRLLSGGNQQKIIIGKWLFRQPKIMFFDEPTRGIDVGAK
LAIYRLMDELAAKGIGIILISSELPEILGLSDRVAVFHEGRITATLTTRETSQEEIML
YASGRVRESARGMTHG"
misc_feature complement(123713..125209)
/gene="rbsA"
/locus_tag="Avi_5135"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:31325"
misc_feature complement(124532..125197)
/gene="rbsA"
/locus_tag="Avi_5135"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature complement(125078..125101)
/gene="rbsA"
/locus_tag="Avi_5135"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature complement(order(124601..124603,124697..124702,
124952..124954,125075..125083,125087..125092))
/gene="rbsA"
/locus_tag="Avi_5135"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72975"
misc_feature complement(124952..124963)
/gene="rbsA"
/locus_tag="Avi_5135"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature complement(order(124745..124759,124916..124930))
/gene="rbsA"
/locus_tag="Avi_5135"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature complement(124697..124714)
/gene="rbsA"
/locus_tag="Avi_5135"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature complement(124679..124690)
/gene="rbsA"
/locus_tag="Avi_5135"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature complement(124595..124615)
/gene="rbsA"
/locus_tag="Avi_5135"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
misc_feature complement(123773..124432)
/gene="rbsA"
/locus_tag="Avi_5135"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene 125415..126086
/locus_tag="Avi_5136"
/db_xref="GeneID:7380939"
CDS 125415..126086
/locus_tag="Avi_5136"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_002547029.1"
/db_xref="GI:222106238"
/db_xref="GeneID:7380939"
/translation="MTLPKRLYQQIADQVRHLIQSGPYPAGARLPPERELAQTLGVSR
PSLREALIALEIDGTIEIRMGSGIYVLSASKSAASGRSLGESPTELMQARAVIESAVI
VKAAAAMTDAVFAALVGIVESMRQEIAGGRKPIDQDRQFHLTIAEQSGNSVLAEIVAN
LFDERHSPISDHIRGRFETPETWSLALIEHEAILTALEARDPLAAQAAMYAHLTASRR
RWLEN"
misc_feature 125424..126080
/locus_tag="Avi_5136"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:32369"
misc_feature 125433..125624
/locus_tag="Avi_5136"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(125436..125438,125505..125507,125511..125516,
125538..125552,125556..125561,125568..125570,
125598..125603,125607..125618)
/locus_tag="Avi_5136"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature <125772..126059
/locus_tag="Avi_5136"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:203742"
gene 126281..127582
/locus_tag="Avi_5137"
/db_xref="GeneID:7380940"
CDS 126281..127582
/locus_tag="Avi_5137"
/codon_start=1
/transl_table=11
/product="extracellular solute-binding protein"
/protein_id="YP_002547030.1"
/db_xref="GI:222106239"
/db_xref="GeneID:7380940"
/translation="MMTTSFTAIAGDASRCARLTLAAFTLALASSGSALAQPKGDLVI
LQWMAGSDLEVIQNLEKAFMAKYPDVKIKEVPVTWSGDPRGGLRTSLMGGEKADLMIN
TWPAFRTELVTAGLLRPLDDAYSALKWGERLDNSWKDLGSVSGQLYGVTFTYGDRSGL
WYDTGTFKKAGITTPPKDWAQFLDTIAKLKSAGVVPMAVPAKTWAHAEVFETLILREG
GADLSRKLVAHEIPWTDDRVKAALRKWRELLSAGCCGDASTMLGTEWDNASDRVLKER
KAGFVQMGMWINNRAETVYKLAPDQFGLFQFPATGQGHDTAASVDAKEFVALASGGNS
EAADAFMDFTISREGANIIAKGGLASSSRAVDVGLYSPAIQASNTFVTGADTAFVLGD
GLPGDLADEYRIQLQKFLGDPSDANIDRVTAAIEAKAKGSY"
misc_feature 126434..>126871
/locus_tag="Avi_5137"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:201851"
misc_feature 126455..127345
/locus_tag="Avi_5137"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_8; pfam13416"
/db_xref="CDD:205594"
gene 127678..128505
/gene="malF"
/locus_tag="Avi_5138"
/db_xref="GeneID:7380941"
CDS 127678..128505
/gene="malF"
/locus_tag="Avi_5138"
/codon_start=1
/transl_table=11
/product="maltose ABC transporter permease"
/protein_id="YP_002547031.1"
/db_xref="GI:222106240"
/db_xref="GeneID:7380941"
/translation="MVLLFLCAVVYPLIDTIRLSFFDIRGLAPAKWVGLSNYANLLAD
SSFRVAVITTIVWTVGTTALSVGIGWGLAVLCSLAPRTTLPFRVMIFCAYGIAEAVSG
FIWLGIYRPGDSGLLNAVLNTLGLENLARAWLGDTSTALACLVIAYAWTQVGLPLMTC
FASIQTIPKSIKEAAYIDGAKPLSIMRHIILPLSMPGLKVAVFINLLGSLRAFDMIFV
MTGGGPVRSTETVGYFMFRESMMQFKLGYGAAATVVLLAVVLFVSIPLLRQRTKEAT"
misc_feature 127678..128385
/gene="malF"
/locus_tag="Avi_5138"
/note="ABC-type spermidine/putrescine transport system,
permease component I [Amino acid transport and
metabolism]; Region: PotB; COG1176"
/db_xref="CDD:31369"
misc_feature <128074..128349
/gene="malF"
/locus_tag="Avi_5138"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(128185..128223,128239..128244,128254..128256)
/gene="malF"
/locus_tag="Avi_5138"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 128502..129326
/gene="aglG"
/locus_tag="Avi_5139"
/db_xref="GeneID:7380942"
CDS 128502..129326
/gene="aglG"
/locus_tag="Avi_5139"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002547032.1"
/db_xref="GI:222106241"
/db_xref="GeneID:7380942"
/translation="MNARAPLWIPVLVGLLAILWIVPVVGLVLTSIRPAGDIAVGGWW
SLHTLRFTLEAWQTVWTKYPLAPAFLSSLKLTGLATLLTVLLAPAAAYAFQFLKFPGR
RILLLVIVNSFVLPQQVVIIPLFTLWRDLHMIDNVWAVLIPFVGLSFAWSIFLVQSFL
AEFPRELIEASKIDGCTPIRTFLHVVLPNSLTPMATVGILQFLWCWNSMLLPMLYLRS
DVPLTVLLARIAGSFEPNLDQQSVAAIVTMAVPLVVFIVFQRFFAADARNRSGGKE"
misc_feature 128520..129293
/gene="aglG"
/locus_tag="Avi_5139"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 128787..129251
/gene="aglG"
/locus_tag="Avi_5139"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(128814..128825,128829..128858,128865..128870,
128874..128876,128937..128942,128946..128948,
128952..128954,128961..128966,128970..128972,
128982..128987,128994..128996,129045..129047,
129087..129092,129099..129101,129120..129131,
129138..129143,129180..129185,129213..129218,
129225..129230,129234..129239,129246..129251)
/gene="aglG"
/locus_tag="Avi_5139"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(128832..128876,129120..129137)
/gene="aglG"
/locus_tag="Avi_5139"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(128874..128876,128922..128924,129138..129140,
129174..129176,129183..129185,129213..129215)
/gene="aglG"
/locus_tag="Avi_5139"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(128997..129035,129051..129056,129066..129068)
/gene="aglG"
/locus_tag="Avi_5139"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 129387..130469
/locus_tag="Avi_5140"
/db_xref="GeneID:7380943"
CDS 129387..130469
/locus_tag="Avi_5140"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(sugar)"
/protein_id="YP_002547033.1"
/db_xref="GI:222106242"
/db_xref="GeneID:7380943"
/translation="MATVELKGVAKRYGALKVIDDIDLDLEDGSLTVFVGPSGCGKST
LLRMIAGLEPITSGDILIDGQRINDATPTERGVAMVFQNYALYPHMTVRNNIGFPLRM
AGMKSADIGRRVEQAANRLHITPLLERKPAALSGGQRQRVAIGRAIVRDPNVFLFDEP
LSNLDAELRVKMRLEIAELHRSLASTMIYVTHDQVEAMTLADRIVVLRAGNVEQIGTP
ISLYDDPDNMFVAGFIGSPRMNFLAGHVVARSTAAIRVKLSEFKDVEFELAMGSDLAP
GAKISIGMRPENFSSDGSARFDLRVDMVESLGGVSYGYSNMRGEDALTVDLKGDRSVR
AGDTIHTGFHPSKALLFDPASGARLR"
misc_feature 129387..130463
/locus_tag="Avi_5140"
/note="glycerol-3-phosphate transporter ATP-binding
subunit; Provisional; Region: ugpC; PRK11650"
/db_xref="CDD:183258"
misc_feature 129396..130034
/locus_tag="Avi_5140"
/note="The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two...; Region:
ABC_MalK_N; cd03301"
/db_xref="CDD:73060"
misc_feature 129492..129515
/locus_tag="Avi_5140"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73060"
misc_feature order(129501..129506,129510..129518,129630..129632,
129858..129863,129960..129962)
/locus_tag="Avi_5140"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73060"
misc_feature 129621..129632
/locus_tag="Avi_5140"
/note="Q-loop/lid; other site"
/db_xref="CDD:73060"
misc_feature 129786..129815
/locus_tag="Avi_5140"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73060"
misc_feature 129846..129863
/locus_tag="Avi_5140"
/note="Walker B; other site"
/db_xref="CDD:73060"
misc_feature 129870..129881
/locus_tag="Avi_5140"
/note="D-loop; other site"
/db_xref="CDD:73060"
misc_feature 129948..129968
/locus_tag="Avi_5140"
/note="H-loop/switch region; other site"
/db_xref="CDD:73060"
gene 130508..132733
/locus_tag="Avi_5141"
/db_xref="GeneID:7380944"
CDS 130508..132733
/locus_tag="Avi_5141"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547034.1"
/db_xref="GI:222106243"
/db_xref="GeneID:7380944"
/translation="MSDNELWYDRAASVWTEALPVGNGRLGAMVFGDAWNERLQINES
TFWSGGPYQPINPDARAALPEVRNLILAERYQEADRKAYEGAMAKPDRQTSYQPIGDV
WLDLHHDMTVTNYRRSLDLETAVAVTQYDCHGVHFRRDVFASAIQDVIVCKISVDQPG
ALSMTVMLSSPQNGDPIDIADATLGYDGRNRRQNGIDSALRFAFRVRVLAEGGFVDIG
EETIRVREASSVMLLIDAGTSFQNYRTVDGDPQAQIKARLDAAAMLSYEALLEAHVTE
HRRLFNRMQIALGDKPVPTLPTDKRVAAYAEGDDPSLAALYLQYGRYLAISCSRPGTQ
AANLQGIWNEDILPAWGSKYTVNINLEMNYWLADVANLSETFLPLVELVEDVAETGRE
MAKAHYGARGWVLHHNTDIWRATGPIDGPHWGLWPMGGAWLCAQLYDHYRFNPDRAVL
ERIYPLIKGAVEFALDTLVALPDSNYLGTCPSLSPENSHPFGSSLCAAPAMDNQILRD
LFEAFADASATLGRDGELRTEAAATRARLPEDRIGKGGQLQEWMDDWDLDAPEQQHRH
VSHLYGLYPSLQIDPLETPEMAKAAQVVLERRGDDATGWGIGWRLNLWARLGNGNRAA
EVLVKLLTPERTYPNLMDAHPPFQIDGNFGGAAGIVEMLVQSRPGELRLLPALPEQWS
SGSLKGVRIRGGHTVDLSWQAGKLTSLRITAGHSGPLTIRQPAGVLEVQLREGEVWEG
R"
gene 132809..134881
/locus_tag="Avi_5142"
/db_xref="GeneID:7380945"
CDS 132809..134881
/locus_tag="Avi_5142"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547035.1"
/db_xref="GI:222106244"
/db_xref="GeneID:7380945"
/translation="MSQNSLRPLRYRQIHLDFHTSEHIPGIGSQFDAEAFVDTLKQSH
VNSITLFAKCHHGWSYYPTKVGAPHPNLSRPDLLGEMIAACNAADIETPIYLSVQWDE
RTARLHPEWRVMKANNHLDHADDHDRSAQKQLSAAWHTLCLNHDDFRSHLMAEAREVL
TLYPTAGLFFDIIQTPDCVCNACLARMARLNLDPLNKVDRLANDEAVNAQFREEMSTV
LRREFPQSRIFYNSGHINKYGKDRFAPYTHLELESLPTGGWGYNHFPSSARYAARLGL
DFVSHTGKFHTSWGEFGGFKHPDALEYECAMMVALGSKCLVGDQLHPNGRINADTYRS
IAPAFRRVAALEPFLDGAQQVSEIAILATEYFHRDGVERVRDSDDGAVQMLLELHRCF
DVIDPEMDFSRHRLIILPDTIPVDAALKAKFDAYLASGGAVLISGQSGRIPDSGAFAF
ETGLTLTGENIAFEPSYAQITEALTDARLPASPFVVYAEAEKLQAAGATVLASIRPPY
FNRAFNHFCSHQHTPDDPEADSIGVACAMHGKVGTIAYPVFALYRAMGQPLYKYLVDA
LIERLMPGRVLETTLPSAGRATLTVQAHENRSIVHLLCGFPQIRGQSVRINWQPTARP
MEMIEDITSIGPVSFTVRLPGTPSSVYDAISGETFAWKKQADGAITVDLPGLSIHRAI
VIDGMAPG"
misc_feature <132899..>133321
/locus_tag="Avi_5142"
/note="Alpha-L-fucosidase; Region: Alpha_L_fucos; cl12119"
/db_xref="CDD:209455"
misc_feature <133961..>134176
/locus_tag="Avi_5142"
/note="A4 beta-galactosidase middle domain: a type 1
glutamine amidotransferase (GATase1)-like domain; Region:
A4_beta-galactosidase_middle_domain; cd03143"
/db_xref="CDD:153237"
gene 134941..135972
/locus_tag="Avi_5143"
/db_xref="GeneID:7380946"
CDS 134941..135972
/locus_tag="Avi_5143"
/codon_start=1
/transl_table=11
/product="transcriptional regulator LacI family"
/protein_id="YP_002547036.1"
/db_xref="GI:222106245"
/db_xref="GeneID:7380946"
/translation="MEIIGKRKQATIHDVAEAAGVAIGTVSRYLNGQTVRNGNRAEIE
RAIEALSFQRSAAARAMKSDKTDVIGFLTPELDEFHAQLLNHLARLFRQSGRTLLTYC
HDGDIRLLSESLSYFAGQNVDALILAGHGDIPNDVERFVERGIPVTVYNNDIMGLRVD
RVFVENAKASYRAVRHLIDLGHTRIATAFGTLDTSSGLQRLNGYQQALEEGRIALNPS
YLHSGDWTEEGGYSAIQKFMALAEPPTAVFSANYKMTYGILEWVREHRARVPEDIAIV
SFDDVELFRLYDDGVTAIAQPIEKIAQSISAYVLSRLTQDNVPDIRTRTLDCNLILRG
SSHFRRSSR"
misc_feature 134968..135945
/locus_tag="Avi_5143"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature 134977..135129
/locus_tag="Avi_5143"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature order(134977..134979,135001..135015,135019..135024,
135031..135033,135043..135048,135055..135057,
135094..135096,135103..135105,135112..135117,
135121..135126)
/locus_tag="Avi_5143"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature 135094..135123
/locus_tag="Avi_5143"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature 135142..135933
/locus_tag="Avi_5143"
/note="Ligand binding domain of the LacI tanscriptional
regulator family belonging to the type I
periplasmic-binding fold protein superfamily; Region:
PBP1_LacI_sugar_binding_like; cd06267"
/db_xref="CDD:107262"
misc_feature order(135142..135144,135178..135186,135193..135198,
135202..135207,135226..135240,135244..135246,
135277..135279,135286..135288,135295..135303,
135622..135624,135706..135708,135718..135720,
135727..135732)
/locus_tag="Avi_5143"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:107262"
misc_feature order(135175..135180,135187..135189,135322..135324,
135391..135393,135430..135432,135538..135540,
135613..135615,135775..135777,135826..135828)
/locus_tag="Avi_5143"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107262"
gene 136830..137720
/locus_tag="Avi_5146"
/db_xref="GeneID:7380947"
CDS 136830..137720
/locus_tag="Avi_5146"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(branched chain amino acid)"
/protein_id="YP_002547037.1"
/db_xref="GI:222106246"
/db_xref="GeneID:7380947"
/translation="MTIAMQAARSGAIFLADLSVSVDDVAAVNSAKASSNALALSGVT
LSFGGVVALSDIDLKVSKGEIRAIIGPNGAGKSSIINVISGLYQPDHGRVSIGELHFS
RVPTQRLAQLGIARTFQNLALFKGLSVLDNVMAGRVYRNRSSFVEQIIGYGRAAREHK
DARDRSVAILDFLHLTDLRDRLAGTLPYGLQKRVELARALVAEPDILLLDEPMAGMTA
TEKNEMAHYVRAARDEFGTTVVLIEHDIGVVMGLSDHVAVLDYGRKIADGTPAEISAD
QKVIDAYLGVAPENEDGDGI"
misc_feature 136953..137687
/locus_tag="Avi_5146"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivG; COG0411"
/db_xref="CDD:30760"
misc_feature 136953..137666
/locus_tag="Avi_5146"
/note="The Mj1267/LivG ABC transporter subfamily is
involved in the transport of the hydrophobic amino acids
leucine, isoleucine and valine. MJ1267 is a
branched-chain amino acid transporter with 29% similarity
to both the LivF and LivG components of the E; Region:
ABC_Mj1267_LivG_branched; cd03219"
/db_xref="CDD:72978"
misc_feature 137037..137060
/locus_tag="Avi_5146"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72978"
misc_feature order(137046..137051,137055..137063,137184..137186,
137457..137462,137559..137561)
/locus_tag="Avi_5146"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72978"
misc_feature 137175..137186
/locus_tag="Avi_5146"
/note="Q-loop/lid; other site"
/db_xref="CDD:72978"
misc_feature 137385..137414
/locus_tag="Avi_5146"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72978"
misc_feature 137445..137462
/locus_tag="Avi_5146"
/note="Walker B; other site"
/db_xref="CDD:72978"
misc_feature 137469..137480
/locus_tag="Avi_5146"
/note="D-loop; other site"
/db_xref="CDD:72978"
misc_feature 137547..137567
/locus_tag="Avi_5146"
/note="H-loop/switch region; other site"
/db_xref="CDD:72978"
gene 137717..138616
/locus_tag="Avi_5147"
/db_xref="GeneID:7380948"
CDS 137717..138616
/locus_tag="Avi_5147"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid ABC transporter
permease"
/protein_id="YP_002547038.1"
/db_xref="GI:222106247"
/db_xref="GeneID:7380948"
/translation="MMADFDGLFFTEVLVGGLLSGVMYSLVAIGFVLIYKTSGVLNFA
QGAMLLFAALTFVSLTERGFGFPLAFLVTFAIMILLGIGIERTVLRPLTNKPPITMFM
ATLGLSYMIEGAAQLLWGTQVHGLDLGIEDVPFDIAGVFISKFDIFAAVVAFGLVVAL
SVFFRYTRIGLGFRAVADDPFAALAVGLKLPWIWASVWAAAGLVALVAGLLWGARSGV
QFSLSLIVLKALPVLVLGGFDSILGAIIGGLLIGASEKLAEVYIGAYFGGGIEGWFAY
VIALLFLLVRPSGLFGQKLVERV"
misc_feature 137765..138589
/locus_tag="Avi_5147"
/note="Transmembrane subunit (TM) of Escherichia coli LivH
and related proteins. LivH is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivH_like;
cd06582"
/db_xref="CDD:119324"
misc_feature 138257..138313
/locus_tag="Avi_5147"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119324"
gene 138620..139675
/locus_tag="Avi_5148"
/db_xref="GeneID:7380949"
CDS 138620..139675
/locus_tag="Avi_5148"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid ABC transporter
permease"
/protein_id="YP_002547039.1"
/db_xref="GI:222106248"
/db_xref="GeneID:7380949"
/translation="MSAVSPNVTPARITPAKAMPISVATLLVLLLAYGILPVIGTSYL
FDGILLPFLALSLAGVGLNLLTGYAGQVSLGSAAFMAVGAFACFNFDLRAGSLPLIVS
ILLAGLSAAAIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALTKFSWFSNDSASGVID
APPLTLAGFTFEGPVGRYYFALIIVTLVTFLAHRLVISQTGRNFIAVRDNETAARIIG
VPVLRTKLLAFAVSSFIIGIAGVLWAFAYLRTVEPAGFNLDRSFQVLFIIIIGGLASL
RGAFFGAALIVVFPVVLSRVGAFVFGDLFDSGVLDMTQRIVLGALIILFLILEPDGLA
ALIDRIRKRFGVPVWPA"
misc_feature 138773..139621
/locus_tag="Avi_5148"
/note="Transmembrane subunit (TM) of Escherichia coli LivM
and related proteins. LivM is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivM_like;
cd06581"
/db_xref="CDD:119323"
misc_feature 139253..139309
/locus_tag="Avi_5148"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119323"
gene 139777..141111
/locus_tag="Avi_5149"
/db_xref="GeneID:7380950"
CDS 139777..141111
/locus_tag="Avi_5149"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547040.1"
/db_xref="GI:222106249"
/db_xref="GeneID:7380950"
/translation="MSILSKFKATALVIGISLSVALPAAHADEQYFPLQSYRVGPYAA
GGTGFFGGFIDYLNLINTRDGGVNGVKLTWSEAETQYEVERGVEAYERLKSNPNVAAW
NPLSVGIAYAMIDRITADKTPLITINHGRTDSTDGRVFPYVFPLLLNPYSETSGIVNY
IGSKLGGIENLKGKKIVVLYHGSPYGKETIPIYELLAKKYGFDVQQIEVPHPGNEQQA
QWLTIRRAKPDYVVLRGWGVMNPVALKTAAKTGFPVDHIIGNVWSNSEEDVIPAGDAA
KGYTAITTQASGAEYPVVKEIVKTLYDSGKGNLEDKKRIGSVYHNLGIVNGILNVEAI
RIAQAKFGKRTLTGDEVRWGFEHLQLDQKRVEELGAKDLFHSINVTWDNHEGNGYVTF
QQWDGKKWNVVSDWIAPDWALLRPIIEKSSEAYAKDKGIKIRTAADADGVTN"
misc_feature 139867..140934
/locus_tag="Avi_5149"
/note="Type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type active
transport systems that are predicted to be involved in
transport of amino acids, peptides, or inorganic ions;
Region: PBP1_ABC_ligand_binding_like_1; cd06334"
/db_xref="CDD:107329"
misc_feature 139882..140970
/locus_tag="Avi_5149"
/note="Periplasmic binding protein; Region: Peripla_BP_6;
pfam13458"
/db_xref="CDD:205636"
misc_feature order(140089..140097,140158..140166,140329..140331,
140482..140484,140557..140559)
/locus_tag="Avi_5149"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107329"
gene 141303..142076
/locus_tag="Avi_5150"
/db_xref="GeneID:7380951"
CDS 141303..142076
/locus_tag="Avi_5150"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(branched chain amino acid)"
/protein_id="YP_002547041.1"
/db_xref="GI:222106250"
/db_xref="GeneID:7380951"
/translation="MKDARLLQVDGLHATYNHAITALHGVSFSLARGEILALLGANGA
GKTTALKAVSNLLSAERGQINAGSIHFDGVDVTKTSPAALVRAGLVQVLEGRHCFHSL
SVEENLTCGGLGRSSSRAEIANDLERIYGLFPRLKEKRRTLSGLTSGGEQQMTAVGRA
LMSRPRLLVLDEPSMGLAPIVVQDIFRTLRRLNREEGLSILVAEQNSAIALTYAHRAT
ILENGKDVLTGTAREIRERDDVKSFYLGQNNRVANDHVI"
misc_feature 141312..142040
/locus_tag="Avi_5150"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivF; COG0410"
/db_xref="CDD:30759"
misc_feature 141321..142010
/locus_tag="Avi_5150"
/note="LivF (TM1139) is part of the LIV-I bacterial
ABC-type two-component transport system that imports
neutral, branched-chain amino acids. The E. coli
branched-chain amino acid transporter comprises a
heterodimer of ABC transporters (LivF and LivG), a...;
Region: ABC_TM1139_LivF_branched; cd03224"
/db_xref="CDD:72983"
misc_feature 141420..141443
/locus_tag="Avi_5150"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72983"
misc_feature order(141429..141434,141438..141446,141582..141584,
141813..141818,141915..141917)
/locus_tag="Avi_5150"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72983"
misc_feature 141573..141584
/locus_tag="Avi_5150"
/note="Q-loop/lid; other site"
/db_xref="CDD:72983"
misc_feature 141741..141770
/locus_tag="Avi_5150"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72983"
misc_feature 141801..141818
/locus_tag="Avi_5150"
/note="Walker B; other site"
/db_xref="CDD:72983"
misc_feature 141825..141836
/locus_tag="Avi_5150"
/note="D-loop; other site"
/db_xref="CDD:72983"
misc_feature 141903..141923
/locus_tag="Avi_5150"
/note="H-loop/switch region; other site"
/db_xref="CDD:72983"
gene complement(142294..144624)
/gene="mcpC"
/locus_tag="Avi_5151"
/db_xref="GeneID:7380952"
CDS complement(142294..144624)
/gene="mcpC"
/locus_tag="Avi_5151"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_002547042.1"
/db_xref="GI:222106251"
/db_xref="GeneID:7380952"
/translation="MTLSIRNVLISVFALLSLMLNVLVGNSMLSSYRTYQVNAEVSEL
TGFDKALFKALLAFRSERGDSASALSISIADGAGSVQSVQKNRAVVDAGMNEAKVIAG
GIKATDLSAPIATVLATYEKVATYRKTIDAELAKPLEARDASITKASMDLGGTFLADL
EKASEAAEGRMRTLDAALMPMIQMRAYAWSTRALGGGSALILNNAVTSGQQISAENQV
KLAAGDANVAYAWKAVRVLVDHKDTPQAIKDGFKVADAAYFTGDYAKMRADVIAKLSA
GEKSPLTIDQWRAPTTAALGKVADIASLAMDTLNANAATAKSTALTHTLSFLALFLLV
LALGIIGLAVIVRKVIRPIGALTRCMGALADGDLSVVVPGAKRRDEMGEMARSVEVFQ
IAAIRNKELEANAEENRRIAERDRIETQRRIEEEAEERLTRATGALASGLQKLASGDM
LCEISEEFAPRFEELRQDFNASVSQLRTTLLAVGGSALAVSGGSSEISHASDDLAKRT
EQQAASLEETAAALEEITANVRATSKRTGEARDLVRDTKSRAEQSGVVVNNAVTAMER
IEHASRQIGQIIGVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSA
NAAKEIKSLVSNSEVAVSEGVKLVNDTGEGLTAIASLVQSINQHMDAIATAAQEQSVG
LGEVNTAVNHMDQATQKNAAMVEEMNAAGAGLAQESGKLTELLGQFRTGDNRQAGHAP
TGRAPARPATRPAAPSRQTYATQGNAALKGESWEEF"
misc_feature complement(143449..143580)
/gene="mcpC"
/locus_tag="Avi_5151"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature complement(order(143452..143457,143461..143466,
143473..143478,143482..143487,143536..143538,
143542..143547,143554..143559,143563..143568,
143575..143580))
/gene="mcpC"
/locus_tag="Avi_5151"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(142438..143139)
/gene="mcpC"
/locus_tag="Avi_5151"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(142501..143052)
/gene="mcpC"
/locus_tag="Avi_5151"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(142504..142509,142516..142518,
142525..142530,142537..142539,142546..142551,
142555..142560,142567..142572,142576..142581,
142588..142590,142597..142602,142609..142611,
142618..142623,142630..142635,142639..142644,
142651..142653,142660..142665,142672..142674,
142681..142686,142723..142728,142735..142740,
142744..142749,142756..142761,142768..142770,
142777..142782,142789..142791,142798..142800,
142810..142812,142831..142833,142840..142842,
142852..142854,142861..142866,142873..142875,
142882..142884,142891..142896,142903..142908,
142915..142917,142924..142929,142933..142935,
142945..142950,142954..142959,142966..142968,
142975..142980,142987..142992,142999..143001,
143008..143013,143020..143022,143029..143034,
143038..143043,143050..143052))
/gene="mcpC"
/locus_tag="Avi_5151"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(142765..142866)
/gene="mcpC"
/locus_tag="Avi_5151"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 144962..146326
/locus_tag="Avi_5152"
/db_xref="GeneID:7380953"
CDS 144962..146326
/locus_tag="Avi_5152"
/codon_start=1
/transl_table=11
/product="nitrilotriacetate monooxygenase"
/protein_id="YP_002547043.1"
/db_xref="GI:222106252"
/db_xref="GeneID:7380953"
/translation="MSPRKQIILNAFNMNCVGHINHGLWAHPRDRSHDYKSLRYWTDL
ARTLERGLFDGLFLADIVGVYDIYQNSVDLTLRESIQLPVNDPMLLVSGMAAVTDNLG
FGITVNTSVEAPYTFARKISTLDHLTSGRIGWNIVTGYLDSAAKALGKTGMTEHDARY
DQADDYMDLLYKLWEGSWEEGAVRLDKQARIYADPAKVHKVQHNGPYYQSEGYHLSEP
SIQRTPVLYQAGTSGRGRKFAARHAECVFIGATDKAAARKTSQALREEVVAAGRRPDD
IKIFLGVTVVTDKSREAAADKLADYRRYASPEAGLAHFSAGSGIDLSRYELDDPIQYG
PTNAIQSVTQLAKQKGWTKRQLLNELSIGGRYPLITGAPGEVAEELMSWIDEGDIDGF
NLTRTVTPESYEDFIEFVVPELQSRGAYKTSYGDGSLRHRLFGEGNRLPARHAGSLYR
HTER"
misc_feature 144986..146257
/locus_tag="Avi_5152"
/note="FMN-dependent oxidoreductase, nitrilotriacetate
monooxygenase family; Region: FMN_nitrolo; TIGR03860"
/db_xref="CDD:200332"
misc_feature 144986..146221
/locus_tag="Avi_5152"
/note="nitrilotriacetate monoxygenase oxidizes
nitrilotriacetate utilizing reduced flavin mononucleotide
(FMNH2) and oxygen. The FMNH2 is provided by an
NADH:flavin mononucleotide (FMN) oxidorductase that uses
NADH to reduce FMN to FMNH2; Region:
Nitrilotriacetate_monoxgenase; cd01095"
/db_xref="CDD:73245"
misc_feature order(145001..145003,145013..145015,145184..145186,
145370..145372,145436..145438,145658..145663)
/locus_tag="Avi_5152"
/note="active site"
/db_xref="CDD:73245"
misc_feature 145277..145282
/locus_tag="Avi_5152"
/note="non-prolyl cis peptide bond; other site"
/db_xref="CDD:73245"
gene 146569..147972
/locus_tag="Avi_5154"
/db_xref="GeneID:7380954"
CDS 146569..147972
/locus_tag="Avi_5154"
/codon_start=1
/transl_table=11
/product="nitrilotriacetate monooxygenase"
/protein_id="YP_002547044.1"
/db_xref="GI:222106253"
/db_xref="GeneID:7380954"
/translation="MTRTIHFNAFDMNCVGHQSPGLWAHPDDRSYTYKDLDYWQNLAR
TLERGIFDGIFIADVIGYYDVYKGSNFHAIQQAAQIPVNDPLQLAAPIALATEHLGIG
ITASTSFEHPYTFARRLATADHHTKGRVGWNIVTSYLESGAKNVGQSGLKRHDNRYEI
ANEYLEVIYKLLEGSWEEGAIIRDPKGRVFTDPAKVHEIGHKGKHFDVPGYGLTEPSP
QRTPVLYQAGASGPGKKFAAEHAECVFVAAPTKSVLKAYVAEIRQQAAAAGRDPNALK
IYTLITIITDETEAKARAKFEDYKQYVSYDGSLVFMSGWSGIDFGQYAPTDVIQKVET
NAIHSFVEHIAGGDKSWTIEELAKFGGIGGLGPVFVGAPDQVADILQEWVADTDVDGF
NIAYAVTPGSFEDVVNHIVPELQKRGAYPTAYKPGTLREKLFGQGPYLPQNHPADQYR
DIEAFKRAQKAPLANAS"
misc_feature 146581..147828
/locus_tag="Avi_5154"
/note="nitrilotriacetate monoxygenase oxidizes
nitrilotriacetate utilizing reduced flavin mononucleotide
(FMNH2) and oxygen. The FMNH2 is provided by an
NADH:flavin mononucleotide (FMN) oxidorductase that uses
NADH to reduce FMN to FMNH2; Region:
Nitrilotriacetate_monoxgenase; cd01095"
/db_xref="CDD:73245"
misc_feature 146587..147864
/locus_tag="Avi_5154"
/note="FMN-dependent oxidoreductase, nitrilotriacetate
monooxygenase family; Region: FMN_nitrolo; TIGR03860"
/db_xref="CDD:200332"
misc_feature order(146596..146598,146608..146610,146785..146787,
146971..146973,147037..147039,147259..147264)
/locus_tag="Avi_5154"
/note="active site"
/db_xref="CDD:73245"
misc_feature 146878..146883
/locus_tag="Avi_5154"
/note="non-prolyl cis peptide bond; other site"
/db_xref="CDD:73245"
gene 148007..149275
/gene="acd"
/locus_tag="Avi_5155"
/db_xref="GeneID:7380955"
CDS 148007..149275
/gene="acd"
/locus_tag="Avi_5155"
/codon_start=1
/transl_table=11
/product="acyl-CoA dehydrogenase"
/protein_id="YP_002547045.1"
/db_xref="GI:222106254"
/db_xref="GeneID:7380955"
/translation="MGTVTDTKIDYTVHPRVNSSDPVAPRPRPAVPAHIVQSDAEAIE
IAKRLAERFKVNAALRDREGLLPITELDEYSQSGLWSINVPKAYGGPEVSYATVAKVI
STIASADPAIAQVTQNHLAIVATVDLDGTEEQKQLFFGWALQGLRYGNAFSELKSKTV
ADFETKVVHDGDDVIVNGEKFYTTGALLSHVVPIVGVDETGQGYLVFADREAPGLTVT
NNWSSFGQRTTASGSVKLENVRVPKVRALKVTSFDHPTVGGPVSQIIQSAIDAGIARG
AIDDTIRFVKTLSRPWIDSGKQRASEDLFTIAAIGDLKIRLHAAEALLEIAGRSIDAA
RANATLDTVSEATIKTGESKVLTTEIAILATNKLFELAGTRSTLAEHGLDRHWRNARV
HTLHDPVRWKFYHVGNYYLNGEHPPRHAWN"
misc_feature 148106..149272
/gene="acd"
/locus_tag="Avi_5155"
/note="sulfur acquisition oxidoreductase, SfnB family;
Region: sulfur_SfnB; TIGR04022"
/db_xref="CDD:188537"
misc_feature 148136..149254
/gene="acd"
/locus_tag="Avi_5155"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
misc_feature order(148367..148369,148454..148456,148460..148462,
148550..148552,148556..148558,149201..149209,
149213..149215,149219..149221)
/gene="acd"
/locus_tag="Avi_5155"
/note="active site"
/db_xref="CDD:173838"
gene 149297..150559
/gene="acd"
/locus_tag="Avi_5156"
/db_xref="GeneID:7380956"
CDS 149297..150559
/gene="acd"
/locus_tag="Avi_5156"
/codon_start=1
/transl_table=11
/product="acyl-CoA dehydrogenase"
/protein_id="YP_002547046.1"
/db_xref="GI:222106255"
/db_xref="GeneID:7380956"
/translation="MSTTDRTLHRQAALTAGRPAPHIPPRRTKAHVIKDDAEAVAVAK
ELARDFAVGAAERDRQRRLPVAEIDRFSQSGLWAISVPKAYGGAGVSTVTLAEVTAII
SAADSSIGQIPQNHFYMVEALRLSGSDAQKAHYFQRVLDGDRLGNAFTEIGTKTPVDY
KTHFAERDGKLLLNGQKFYATGSLFAHIIVAVAKGPNGRVHLVFIDRATPGLDLVDDW
TSFGQRSTGSGTVTFDDVEITPFQVVDHDENFDKPTPMGPFAQIIHSAVQVGIARGAL
AETISYVRAHARPFFELSIEHGYEDPHTIHAVGDVSIRVHAADALLARAGRILDIATA
NPTAQTVAEASIAVAEVKALGTEVAQLAATKLIELGGARSTLEAYGLDRYWRNARTHS
LHDPVRWKYHHIGNFYLNDQLPPRHGAI"
misc_feature 149384..150556
/gene="acd"
/locus_tag="Avi_5156"
/note="sulfur acquisition oxidoreductase, SfnB family;
Region: sulfur_SfnB; TIGR04022"
/db_xref="CDD:188537"
misc_feature 149417..150538
/gene="acd"
/locus_tag="Avi_5156"
/note="Dibenzothiophene (DBT) desulfurization enzyme C;
Region: DszC; cd01163"
/db_xref="CDD:173852"
misc_feature order(149831..149833,149837..149839)
/gene="acd"
/locus_tag="Avi_5156"
/note="Flavin binding site [chemical binding]; other site"
/db_xref="CDD:173852"
gene 150631..151674
/locus_tag="Avi_5157"
/db_xref="GeneID:7380957"
CDS 150631..151674
/locus_tag="Avi_5157"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547047.1"
/db_xref="GI:222106256"
/db_xref="GeneID:7380957"
/translation="MTYQPDPKRYDNAHFRRTGRSGLKLPALSFGLWHNFGDTTPVET
QRSILFKAFDLGITHFDLANNYGPPAGSAEINFGRILREDFAGLRDELIISTKAGWDM
WPGPYGRGGGSKKALLSSLDQSLTRLGVDYVDIFYSHRYDAETPLEETADALAQAVRQ
GKALYVGISSYSGTKTREIAALLKERQVPLLINQPAYNLFNRWIEKDLIDAADEVGAG
IIAFTPLAQGLLTNKYLNGIPDDARVNRPGGDFLRPEHLKEENIVRARALNEIATRRG
QSLAQLAIAWVLRDPRVTSALIGASSARQIQENVDALNNLSFTAEELAEIDRYAVEGG
INLWEKPSHDQVV"
misc_feature 150670..151620
/locus_tag="Avi_5157"
/note="Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion];
Region: Tas; COG0667"
/db_xref="CDD:31011"
misc_feature 150673..151614
/locus_tag="Avi_5157"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature order(150721..150729,150811..150813,150826..150828,
150919..150921,151045..151050,151135..151140,
151210..151212,151294..151311,151468..151470,
151519..151530,151543..151545,151552..151557)
/locus_tag="Avi_5157"
/note="active site"
/db_xref="CDD:119408"
misc_feature order(150811..150813,150826..150828,150919..150921,
151045..151047)
/locus_tag="Avi_5157"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene complement(151739..152992)
/locus_tag="Avi_5158"
/db_xref="GeneID:7380958"
CDS complement(151739..152992)
/locus_tag="Avi_5158"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547048.1"
/db_xref="GI:222106257"
/db_xref="GeneID:7380958"
/translation="MTTLDLPKPDFARNMKLIGHSDIGGRGDGLQLMVHHGHAYVAHP
WSQGFSIIDVRDPKHPKTVNYVQAPANTWNIHLQTHGDLLLVINALDLFADVESFTDE
KAYYTQSVGETVAASKRERAWTAGMTVYDISTPAAPRKIGQLDVDGVGFHRLWYVGGR
YAYASALLDGFSDYIFVTIDMADPTKPELVGRWWLPGMNTAAGESRTWADGKRYALHH
ALVHGDTAYACWRDGGLTLLDIKDHSAPKLIKHHNWSPPYGGGTHSPLPLPGRDLLVV
ADEAVLDNEEDGRKHTWVFDIRVPENPISISTFPIPNEIDYTQKGGHFGPHNLHENRP
GSFVSDTLIFATWQNAGIRAFDISDPYHPVETGALVPAAPTTMTDRRPGRPKVIQSAD
VFVDANGLIYATDYNAGLEIIEYGG"
misc_feature complement(151742..152977)
/locus_tag="Avi_5158"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5276"
/db_xref="CDD:34873"
gene complement(153026..154069)
/locus_tag="Avi_5159"
/db_xref="GeneID:7380959"
CDS complement(153026..154069)
/locus_tag="Avi_5159"
/codon_start=1
/transl_table=11
/product="ABC transporter binding protein"
/protein_id="YP_002547049.1"
/db_xref="GI:222106258"
/db_xref="GeneID:7380959"
/translation="MIKSLRTLGAVLLAGSIFATTASAAGIAGAPAPFDKKTVNIAVV
SYLGGGDWLQAFEAGVKRQADALGINLTVSQARNDNDAERALIEQAINLKVDGIIINN
GRPEVLQDVAQKALDAGIKVVAYDVNLDNPNIPQIEQSDADMAKLVLDQAVKDKGDGF
NGGAIYVAGFAPLDRRYAVWKDYVAKHNLKEKAVWGVVNDTVPATVADQTKAVLRANP
DISVIFTPWDEFAKGAKLAIDELGLSSKVKIYGVDISTADIQLMIEPDSAWVATAATN
AAVVGEVSVRAVSLSVAGQNPGHSVLLKPTLITRDDLVNNKIGSIEELQQKFPAFLKS
DAATAAWIPSTVK"
misc_feature complement(153143..153949)
/locus_tag="Avi_5159"
/note="Methylthioribose-binding protein-like of ABC-type
transport systems that belong to a family of
pentose/hexose sugar-binding proteins of the type I
periplasmic binding protein (PBP1) superfamily; Region:
PBP1_methylthioribose_binding_like; cd06305"
/db_xref="CDD:107300"
misc_feature complement(153272..153949)
/locus_tag="Avi_5159"
/note="Periplasmic binding protein domain; Region:
Peripla_BP_4; pfam13407"
/db_xref="CDD:205585"
misc_feature complement(order(153245..153247,153311..153313,
153542..153544,153692..153694,153914..153916))
/locus_tag="Avi_5159"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107300"
gene complement(154101..155147)
/gene="rbsC"
/locus_tag="Avi_5160"
/db_xref="GeneID:7380960"
CDS complement(154101..155147)
/gene="rbsC"
/locus_tag="Avi_5160"
/codon_start=1
/transl_table=11
/product="ribose ABC transporter permease"
/protein_id="YP_002547050.1"
/db_xref="GI:222106259"
/db_xref="GeneID:7380960"
/translation="MTTVNDIPKETLAQAQDRQSLASLVRETIRRGAVFILLAGLIVI
FSLAQPAFININNLMSILQAVAVVAIIGAGVTVTLAIGGFDLSVGAVAASSVMASSYA
MIVLGLNAYQTVPLVLAFGALIGFANAFLIVKLKVPDLLATLAMMFLLSGLQLIPTAG
RSISVGLILPNGTTATGKYDPLFLTIGRSSLFGLIPFPVILLAIVAVTLFVLTERTRL
GRLLFATGGNEVATRLAGANTAKIKTFAYVLSGTLAAFGGIIVAARVGRGDVSSGASL
LMDSVAASLIGFAVLGLRRPNVLGTIIGAVFVGILLNGLTMLNAPYYTQDFVKGFVLV
GALALTYGVSRART"
misc_feature complement(154128..154913)
/gene="rbsC"
/locus_tag="Avi_5160"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature complement(154404..154460)
/gene="rbsC"
/locus_tag="Avi_5160"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene complement(155147..156628)
/gene="rbsA"
/locus_tag="Avi_5161"
/db_xref="GeneID:7380961"
CDS complement(155147..156628)
/gene="rbsA"
/locus_tag="Avi_5161"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(ribose)"
/protein_id="YP_002547051.1"
/db_xref="GI:222106260"
/db_xref="GeneID:7380961"
/translation="MPLLDVQTISRSFGSTRALIDASLVIEPGEIVALMGANGAGKST
LVKILSGVQSADSGSILLKGQPFAPQSPAEAAKFGVVTVHQSTDVVGIPGLSVADALL
LNHYIDGRQPFFLSTKSVRREAARILSDAGFNLPLDRDFADLGAADRQMVAIARALAN
KAELLILDEPTASLSTQEAERLYAILLGLKARGIAILYISHRTADLAALADRVVILRG
GRNVGALRRPIDFDAALETMIGRALNIARPDRRTEFGKTVLDLRGIRLLNSSKPFDLT
VREGEVVAITGVLGAGKSRLLSALFGAGQFVAGEAVLDGKRYAPKSPAEAIASGVALV
AEDRHRSALMPADWPGESVAATISLPHLKRWYPSGFLASDAERVKAKAAISRLGIKAA
GPDASVWSLSGGNQQKTVIARWEVEQSRLLLLDEPFQGVDVGARQDIITTIRSHADRA
TLIATSDFEEAQEVADRILLIDQHTLIELTPTAASAHHHKEIA"
misc_feature complement(155150..156628)
/gene="rbsA"
/locus_tag="Avi_5161"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:31325"
misc_feature complement(155960..156619)
/gene="rbsA"
/locus_tag="Avi_5161"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature complement(156500..156523)
/gene="rbsA"
/locus_tag="Avi_5161"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature complement(order(156026..156028,156122..156127,
156374..156376,156497..156505,156509..156514))
/gene="rbsA"
/locus_tag="Avi_5161"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72975"
misc_feature complement(156374..156385)
/gene="rbsA"
/locus_tag="Avi_5161"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature complement(order(156170..156184,156332..156346))
/gene="rbsA"
/locus_tag="Avi_5161"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature complement(156122..156139)
/gene="rbsA"
/locus_tag="Avi_5161"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature complement(156104..156115)
/gene="rbsA"
/locus_tag="Avi_5161"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature complement(156020..156040)
/gene="rbsA"
/locus_tag="Avi_5161"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
misc_feature complement(155201..155866)
/gene="rbsA"
/locus_tag="Avi_5161"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene 156998..158044
/locus_tag="Avi_5162"
/db_xref="GeneID:7380962"
CDS 156998..158044
/locus_tag="Avi_5162"
/codon_start=1
/transl_table=11
/product="ABC transporter binding protein"
/protein_id="YP_002547052.1"
/db_xref="GI:222106261"
/db_xref="GeneID:7380962"
/translation="MTSILRLLAFTALSPLVLTHSAVAAGIAGAPAPFDQGGVKLALI
SYISAGDFFQAYQAGAQAQAKALGVDLRIFPGRQDAAEQREQILQAINLGVKGIVIDH
GLPESLSDVVQQALDKGIKVVAFDVNLNNPKIPQVEQSDHKLAELTLDQAIKDNGKSF
NAGYAYVAGFAPLDRRNEIWDKVKAANSGIVEKARFGTVSDTTATSTADQAKAVFRAN
PDISVVFAPYDEFARGVKLAAADLGISAKLKIYSADISTADIQEIVEDGSPWVATAAT
NPAVVGAVSIRAAALQIAGETVPHQIIVDPVLVTQKQLRDANVKTIEELAKKIPSFST
SSAVTASWIPSAAF"
misc_feature 157115..157927
/locus_tag="Avi_5162"
/note="Methylthioribose-binding protein-like of ABC-type
transport systems that belong to a family of
pentose/hexose sugar-binding proteins of the type I
periplasmic binding protein (PBP1) superfamily; Region:
PBP1_methylthioribose_binding_like; cd06305"
/db_xref="CDD:107300"
misc_feature 157118..157888
/locus_tag="Avi_5162"
/note="Periplasmic binding protein domain; Region:
Peripla_BP_4; pfam13407"
/db_xref="CDD:205585"
misc_feature order(157151..157153,157373..157375,157523..157525,
157757..157759,157823..157825)
/locus_tag="Avi_5162"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107300"
gene complement(158120..159442)
/locus_tag="Avi_5163"
/db_xref="GeneID:7380963"
CDS complement(158120..159442)
/locus_tag="Avi_5163"
/codon_start=1
/transl_table=11
/product="O-acetylhomoserine sulfhydrylase"
/protein_id="YP_002547053.1"
/db_xref="GI:222106262"
/db_xref="GeneID:7380963"
/translation="MSSKPLHPETLALHAGWRADPTTGAVAVPIYQTTSFQFRDTEHA
ANLFALKELGNIYSRIGNPTVDVLEQRIAAIEGGVAALALASGQAASAFAIQNLAKVG
DNIVSSTDLYGGTWNLFANTLKDQGIEVRFVDPTDPENFRRATDERTRAYYAETLPNP
KLTVFPIAEVASIGREFGIPLIVDNTAAPLLARPFDHGAAVVVYSSTKYLGGHGTSIG
GLIVDGGNFDWEAHKERQPALNTPDPSYHGAVWTEATKPLGPIAYIIKARVTLLRDLG
AALSPFNAFQLLQGIETLPLRIERHVKNAAAVADYLAKRPEIAKVIYPSQQSGVWRER
ANKYLKGGYGGLVGFELKDGLDAGRQFIDGLELLYHVANIGDARSLAIHPASTTHSQL
TAEEQAASGVSPGYVRLSIGIEHIDDIIADIQRGLDAASSGVQNSKAA"
misc_feature complement(158162..159424)
/locus_tag="Avi_5163"
/note="OAH/OAS sulfhydrylase; Region: OAH_OAS_sulfhy;
TIGR01326"
/db_xref="CDD:130393"
misc_feature complement(158159..159373)
/locus_tag="Avi_5163"
/note="CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of...; Region:
CGS_like; cd00614"
/db_xref="CDD:99738"
misc_feature complement(order(158354..158356,158594..158599,
158603..158605,158636..158638,158792..158794,
158798..158800,158822..158824,159083..159085,
159092..159094,159107..159109,159176..159181,
159185..159190,159266..159268,159272..159274,
159329..159334,159338..159349))
/locus_tag="Avi_5163"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99738"
misc_feature complement(order(158792..158794,158819..158824,
158828..158830,158891..158893,158978..158980,
159107..159109,159179..159187))
/locus_tag="Avi_5163"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99738"
misc_feature complement(order(158819..158824,158828..158830,
158891..158893,159107..159109,159179..159187))
/locus_tag="Avi_5163"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99738"
misc_feature complement(158819..158821)
/locus_tag="Avi_5163"
/note="catalytic residue [active]"
/db_xref="CDD:99738"
gene 159786..160799
/gene="rbsB"
/locus_tag="Avi_5165"
/db_xref="GeneID:7380964"
CDS 159786..160799
/gene="rbsB"
/locus_tag="Avi_5165"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(ribose)"
/protein_id="YP_002547054.1"
/db_xref="GI:222106263"
/db_xref="GeneID:7380964"
/translation="MSGDEFNTEIGRRQLIKLSAFAGAAVAGASLLGVNAAHAADEAL
SLKGKRIGISTAGTDHFFDLQAYNAQIAEVKRLGGEPLAVDAGRSDGKLVAQLQTLIA
QKPDAIVQLLGTLTVIDPWLKRARDAGIPVLTIDVGSSHSLNNSTSDNWGIGKDLALQ
LVSDIGGEGNVVVFNGFYGVTPCAIRYDQLVNVIKYFPKVKIIQPELRDVIPNTVQDA
FAQVTAILNKYPEKGSIKAIWSAWDIPQLGATQALAAAGRTEIKTYGVDGSPEVLQLV
ADPASPAAADVAQQPAELGRQAIQNVALLLSGKTLPRESYVPALLANKQTVNEVTRKL
GIG"
misc_feature 159933..160748
/gene="rbsB"
/locus_tag="Avi_5165"
/note="Type 1 periplasmic binding fold superfamily;
Region: Periplasmic_Binding_Protein_Type_1; cl10011"
/db_xref="CDD:209116"
misc_feature 159936..160715
/gene="rbsB"
/locus_tag="Avi_5165"
/note="Periplasmic binding protein domain; Region:
Peripla_BP_4; pfam13407"
/db_xref="CDD:205585"
gene 160872..162425
/gene="rbsA"
/locus_tag="Avi_5167"
/db_xref="GeneID:7380965"
CDS 160872..162425
/gene="rbsA"
/locus_tag="Avi_5167"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(ribose)"
/protein_id="YP_002547055.1"
/db_xref="GI:222106264"
/db_xref="GeneID:7380965"
/translation="MRERQPAEGDAIRFHGISKRFGGARALAEVSFGIRAGTIHGLVG
QNGAGKSTLIKILAGLHRQDDGTIKIDGVAIQNLTPPLVEKLGIHFIHQDRLLVSSFT
VGEALFLGCEPKIAGTPFLDRRAMKRQAQAILQDYFGLSLPTNALIGELTTAQKQIVQ
ITRALLAKPKVLVFDEPTAALVRREADMLFSLIRRLRDEGVTIVYISHYLAEIEALCD
DVTVLRNGEVVASRSLAGLSAKQIATLMVERDIAEMFPKSVVAKGERLLDVRGLTAEG
QYQDVSFSLHRGEVLGITGLLGSGAKELLQTLFGLETAGSGTIQTDETVVSFDSPHQA
VSRNLALVPEDRRGNGVALDLTVAENITLASLDRFSRAGFLKTGLEKSAVDRLIAQLQ
IKTAGRDAPVRTLSGGNQQKVAIAKWLSRQSEIYLLDEPTVGVDIGAKVEIYQLIGEL
VEKGAGVIILSSDLPELVGITDRILVFFRGRITAELMSSQTTADAVFASATGSDAATG
SKEGLRHVG"
misc_feature 160884..162359
/gene="rbsA"
/locus_tag="Avi_5167"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:31325"
misc_feature 160905..161564
/gene="rbsA"
/locus_tag="Avi_5167"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature 161001..161024
/gene="rbsA"
/locus_tag="Avi_5167"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature order(161010..161015,161019..161027,161148..161150,
161394..161399,161493..161495)
/gene="rbsA"
/locus_tag="Avi_5167"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72975"
misc_feature 161139..161150
/gene="rbsA"
/locus_tag="Avi_5167"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature order(161172..161186,161253..161267)
/gene="rbsA"
/locus_tag="Avi_5167"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature 161382..161399
/gene="rbsA"
/locus_tag="Avi_5167"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature 161406..161417
/gene="rbsA"
/locus_tag="Avi_5167"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature 161481..161501
/gene="rbsA"
/locus_tag="Avi_5167"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
misc_feature 161658..162317
/gene="rbsA"
/locus_tag="Avi_5167"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene 162415..163464
/gene="rbsC"
/locus_tag="Avi_5168"
/db_xref="GeneID:7380966"
CDS 162415..163464
/gene="rbsC"
/locus_tag="Avi_5168"
/codon_start=1
/transl_table=11
/product="ribose ABC transporter permease"
/protein_id="YP_002547056.1"
/db_xref="GI:222106265"
/db_xref="GeneID:7380966"
/translation="MSAEVNSVSIGVRSPIPTGTRHNGSSEARDFTQSRKGAAWLLRA
GSIFGILSVFLFFSLTAPFFFSVGNLGNVLAQSAILGVLAFGLTVVIIAGGSNVVTGG
IDLSLAANMGLSAAVYASLVQLGWSDGVAVLGALATGLVIGLVNALAVVIVGIVPLLA
TLAVMNVVAGLELVLTQNTVIPASTDFLSLLSATGPFGLPVLAYVLLGAALLVGAVVQ
YTALGLRLYAVGEFPEAARAAGLRVKTLTAGAFIAAGLLGGIAGILNTSYLSGSSTGA
GDILLPVVVTTLLGSVFSRRLVPTIPGTLVSAIFVGVLINGFQLLNLSSTLVAGVQGA
LILLVVSATTLLRRR"
misc_feature 162643..163443
/gene="rbsC"
/locus_tag="Avi_5168"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 163114..163170
/gene="rbsC"
/locus_tag="Avi_5168"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 163472..164473
/locus_tag="Avi_5169"
/db_xref="GeneID:7380967"
CDS 163472..164473
/locus_tag="Avi_5169"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002547057.1"
/db_xref="GI:222106266"
/db_xref="GeneID:7380967"
/translation="MSTVDTKTWTAGALAGGRRRGAYLARYALIFAILVVISIFSTVA
PSFLTGTNLMSVLVNNVALLAIVSIAMTFAVASGGIDLSVATAVDFASFTFVSLVLGG
VPVGLAMLAAIVAGGLVGALNSLLISAIGISPFLATLGTLFIGRSVQQLLTNGGNPVY
LSQAAIPPGFSFIGHGQLLGVPVPLVVTFLLIVLTVVLLSMTRFGRVLTAIGTQASVA
RYSGLSVASVVASAYILAGLIAAIAGILLTATVNVYIPSSGNAFLLNAIGATFIGTTL
HPLRRPNVIGTVLGVLLLGLVSNGLLLSGLNFYWQQVATGLLIFSVLALSSKTARRA"
misc_feature 163667..164449
/locus_tag="Avi_5169"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 164117..164173
/locus_tag="Avi_5169"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 164714..165550
/locus_tag="Avi_5170"
/db_xref="GeneID:7380968"
CDS 164714..165550
/locus_tag="Avi_5170"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter substrate-binding
protein"
/protein_id="YP_002547058.1"
/db_xref="GI:222106267"
/db_xref="GeneID:7380968"
/translation="MLAATMTKTIFGFVLSLSALVATQASADATLDRIKGRGKLTVGV
ILSGAPFGYIDPKSQEQKGFNVDIAQALADDLGVKLETVTVTPPNRVQFLQQGKVDIL
IANMQYTEDRAKVLDFVPTPYDRSGGAAVVRKDSGLKDWADLKGKPVCVSQGSNYTQP
LIEEYGAVVKALPSQPESLLALQGGNCVAAVHVGATVGLLLQDRPEEWKDYAIPFPTE
LVPSDSVIWLRKGEADTQTALDNAVKKLHVSGKLLDFAKSSRLLNIDYLEQEHKALAA
TK"
misc_feature 164831..165484
/locus_tag="Avi_5170"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature 164831..165469
/locus_tag="Avi_5170"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature order(164855..164857,164972..164974,165047..165049,
165179..165181,165290..165292)
/locus_tag="Avi_5170"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature order(165239..165241,165251..165253,165269..165271)
/locus_tag="Avi_5170"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature order(165365..165367,165374..165388)
/locus_tag="Avi_5170"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene 165712..166458
/locus_tag="Avi_5171"
/db_xref="GeneID:7380969"
CDS 165712..166458
/locus_tag="Avi_5171"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter permease"
/protein_id="YP_002547059.1"
/db_xref="GI:222106268"
/db_xref="GeneID:7380969"
/translation="MQDINLTDLFVRLTGSIGLNFEFLATGYEAQIWRDGFLTTLYLV
ALLIPVSLLFGLLFAACLTSGRSWLSAPVRAFVEVTRNTPTLVQLMFSFLVLNTVVSN
LVGGAQNNPLTPFFWVVAVVGLHVAALHSEAIRAGIEAVPASTIEAARGIGFSQFQIL
RYVEVPLAFRASLPAIVNNLINLVKLTTVGNAIAVSEITYASIMVWTQRDNVIELMIV
ILAFFSLINLVVARVGLWAERKLAIPGYGL"
misc_feature 165787..166431
/locus_tag="Avi_5171"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature 165820..166401
/locus_tag="Avi_5171"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(165868..165873,165880..165885,165898..165900,
165928..165939,165943..165972,165979..165984,
165988..165990,166081..166086,166090..166092,
166096..166098,166105..166110,166114..166116,
166126..166131,166138..166140,166189..166191,
166231..166236,166243..166245,166264..166275,
166282..166287,166324..166329,166357..166362,
166369..166374,166378..166383,166390..166395)
/locus_tag="Avi_5171"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(165946..165990,166264..166281)
/locus_tag="Avi_5171"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(165988..165990,166066..166068,166282..166284,
166318..166320,166327..166329,166357..166359)
/locus_tag="Avi_5171"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(166141..166179,166195..166200,166210..166212)
/locus_tag="Avi_5171"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 166455..167237
/locus_tag="Avi_5172"
/db_xref="GeneID:7380970"
CDS 166455..167237
/locus_tag="Avi_5172"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter permease"
/protein_id="YP_002547060.1"
/db_xref="GI:222106269"
/db_xref="GeneID:7380970"
/translation="MMSPMLHNPAGRSPALRNIALVALPLAILIWALADLSLGRELVQ
WLPYLGSGFAMNIVISLSAMTLGSVLGILLGMLQMVPFRLVRYPAAVYVQVFRNAPHL
VLIFATTYIFPFEIIVFGNYLSFPDWVKAMVGLAIPASAYIAEITRGAILSIPTAQWE
AAQGLGFSRWQALRWIILPQCLRRSLPPWMNVLASITMGTSLASLVGVHELLHAATDA
STSVRRLDFTVIAYVVVMAAFFALCYPIARLTRRLERRFKAA"
misc_feature 166587..167228
/locus_tag="Avi_5172"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature 166611..167180
/locus_tag="Avi_5172"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(166659..166664,166671..166676,166689..166691,
166719..166730,166734..166763,166770..166775,
166779..166781,166863..166868,166872..166874,
166878..166880,166887..166892,166896..166898,
166908..166913,166920..166922,166971..166973,
167013..167018,167025..167027,167046..167057,
167064..167069,167106..167111,167139..167144,
167151..167156,167160..167165,167172..167177)
/locus_tag="Avi_5172"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(166737..166781,167046..167063)
/locus_tag="Avi_5172"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(166779..166781,166848..166850,167064..167066,
167100..167102,167109..167111,167139..167141)
/locus_tag="Avi_5172"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(166923..166961,166977..166982,166992..166994)
/locus_tag="Avi_5172"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 167250..168035
/locus_tag="Avi_5173"
/db_xref="GeneID:7380971"
CDS 167250..168035
/locus_tag="Avi_5173"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase (amino
acid)"
/protein_id="YP_002547061.1"
/db_xref="GI:222106270"
/db_xref="GeneID:7380971"
/translation="MIANTDNAIVRLEDVHLSFGQTQVLKGIDLTVNKGDAVSIIGPS
GSGKSTILRCINALVTAQSGRITVAGTRVDQLTKESERIALRKRVGIVFQQYNLFPHL
TVLDNIMLAPTRILGTARREAEKVARELLDKVRLGEKADAYPGQLSGGQQQRVAIARA
LAMKPDLVLFDEVTSALDPETVGEVLWVIRDLIREGMTSILVTHEMRFAEEISDTVVF
TENGRIVGQGSPEQIFHKSDNARIRQFVGGLSGRGTVREGEGI"
misc_feature 167271..167990
/locus_tag="Avi_5173"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:31323"
misc_feature 167277..167921
/locus_tag="Avi_5173"
/note="HisP and GlnQ are the ATP-binding components of the
bacterial periplasmic histidine and glutamine permeases,
repectively. Histidine permease is a multisubunit complex
containing the HisQ and HisM integral membrane subunits
and two copies of HisP. HisP...; Region:
ABC_HisP_GlnQ_permeases; cd03262"
/db_xref="CDD:73021"
misc_feature 167373..167396
/locus_tag="Avi_5173"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73021"
misc_feature order(167382..167387,167391..167399,167529..167531,
167760..167765,167859..167861)
/locus_tag="Avi_5173"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73021"
misc_feature 167520..167531
/locus_tag="Avi_5173"
/note="Q-loop/lid; other site"
/db_xref="CDD:73021"
misc_feature 167688..167717
/locus_tag="Avi_5173"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73021"
misc_feature 167748..167765
/locus_tag="Avi_5173"
/note="Walker B; other site"
/db_xref="CDD:73021"
misc_feature 167772..167783
/locus_tag="Avi_5173"
/note="D-loop; other site"
/db_xref="CDD:73021"
misc_feature 167847..167867
/locus_tag="Avi_5173"
/note="H-loop/switch region; other site"
/db_xref="CDD:73021"
gene 168044..169405
/locus_tag="Avi_5175"
/db_xref="GeneID:7380972"
CDS 168044..169405
/locus_tag="Avi_5175"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547062.1"
/db_xref="GI:222106271"
/db_xref="GeneID:7380972"
/translation="MTTTTAAPLTSAFARAIVQSEPARDNAAMAAARTAIIDFLACAI
AGAGERTTAIVATALGGNIGGEAVLIGSARRTDPLVAAVVNAYAGHVLDYDDVHSSVR
GHPTTVIIPALLALAAERDFTADAMIASYSVGLEAMARLGLSLGARHYENGFHATATL
GTVGAAAAICHLTQASPEETAVALGLAATQSSGLRLQFGFDAKPYHAGMAARSGLLAA
RLASAGFGGAPDFLDNPVGFHSAYAFGAGHPGTVVENWGAPWQIVSPGLTLKAYPCCT
ASHPVASLGIDLHREGLAADAIDTITFTYPPGADAALVVTKPTNGIEARFSPEYVFAA
SLIDGALRLDHFDERPVEPRLMELAARAGRRHQESAPRMSSDPTTRFVILDIVLKDGG
TIQRRFDGLPGLADPADKFREATGADACFAEIPSLVRHMSSSADLRRLLALLNQDALL
IRK"
misc_feature 168158..169300
/locus_tag="Avi_5175"
/note="Uncharacterized protein involved in propionate
catabolism [General function prediction only]; Region:
PrpD; COG2079"
/db_xref="CDD:32262"
gene 169438..170727
/locus_tag="Avi_5176"
/db_xref="GeneID:7380973"
CDS 169438..170727
/locus_tag="Avi_5176"
/codon_start=1
/transl_table=11
/product="monooxygenase"
/protein_id="YP_002547063.1"
/db_xref="GI:222106272"
/db_xref="GeneID:7380973"
/translation="MTRKREIHLGLFLQGAGHHVSGWRHPNAEAGSENFDLLRRVSQL
AEQAKFDMVFLADGLTSGVDAHPSTIARFEPLTLLAALAMVTEKIGLAATASTTYGEP
YHVARAFSSIDHLSQGRAAWNIVTTSYARTANNFSKSHPGHDERYAVAEEFVDVVRGL
WDSWDDDAFIKDKLNGIYADPNKVHLLDHTGKYFSVKGPLNIPRSPQGHPILIQAGSS
GPGQDLAARTADVVFTAQQSLDEAQAFYKSLKDRVTGFGRHPDDVAVMPGFLPVIGRT
AREAADKLAELDQWTELKSAMPLLEERIGHSLADYDPDGPLPDLPISDQLRSRAELLT
ALARRENLTIRQLALRVAAGRGHHIVLGTPEDIADRMQQWFETRAADGFNIMPPFFPE
GLEDFTRLVVPILQERGLFRTDYSGVTLRDHLGVSRP"
misc_feature 169456..170670
/locus_tag="Avi_5176"
/note="nitrilotriacetate monoxygenase oxidizes
nitrilotriacetate utilizing reduced flavin mononucleotide
(FMNH2) and oxygen. The FMNH2 is provided by an
NADH:flavin mononucleotide (FMN) oxidorductase that uses
NADH to reduce FMN to FMNH2; Region:
Nitrilotriacetate_monoxgenase; cd01095"
/db_xref="CDD:73245"
misc_feature 169462..170706
/locus_tag="Avi_5176"
/note="FMN-dependent oxidoreductase, nitrilotriacetate
monooxygenase family; Region: FMN_nitrolo; TIGR03860"
/db_xref="CDD:200332"
misc_feature order(169471..169473,169483..169485,169651..169653,
169810..169812,169873..169875,170092..170097)
/locus_tag="Avi_5176"
/note="active site"
/db_xref="CDD:73245"
misc_feature 169717..169722
/locus_tag="Avi_5176"
/note="non-prolyl cis peptide bond; other site"
/db_xref="CDD:73245"
gene complement(170735..171736)
/locus_tag="Avi_5177"
/db_xref="GeneID:7380974"
CDS complement(170735..171736)
/locus_tag="Avi_5177"
/codon_start=1
/transl_table=11
/product="Ketopantoate reductase"
/protein_id="YP_002547064.1"
/db_xref="GI:222106273"
/db_xref="GeneID:7380974"
/translation="MTRYIIIGAGAVGASLAAEFHSKAIPYLLVGRGKQIAHIAAHGL
TYHRPKQSRVIRLNVLDTAHPPDLHPDDVLLLTVKAQDVEAATQFWASQPVGNTGLAS
ELPLVTFQNGLAAEDIALRRFSKVYAASILIPARFTVTGEVVVGGEPEVGVVTLGRYP
QGLDDKAFAIAADLSTAGYLVETRADIRRWKAAKLEHNVTNVVELFAGTPEARSNAAQ
ALAVEASLVLRAAGYDPASRSERNIDISGWHVAEDAGIEPGQQSTWQSFMRGSSSEVD
YLNGEITRLARFHGIDAPINTAFQQAAAKLARDGSKPGSLPIEDVIGKPPVPLPSHA"
misc_feature complement(170798..171733)
/locus_tag="Avi_5177"
/note="Ketopantoate reductase [Coenzyme metabolism];
Region: ApbA; COG1893"
/db_xref="CDD:32077"
misc_feature complement(171332..171721)
/locus_tag="Avi_5177"
/note="Ketopantoate reductase PanE/ApbA; Region: ApbA;
pfam02558"
/db_xref="CDD:202282"
misc_feature complement(170843..>171112)
/locus_tag="Avi_5177"
/note="Ketopantoate reductase PanE/ApbA C terminal;
Region: ApbA_C; pfam08546"
/db_xref="CDD:203977"
gene complement(171736..172917)
/locus_tag="Avi_5178"
/db_xref="GeneID:7380975"
CDS complement(171736..172917)
/locus_tag="Avi_5178"
/codon_start=1
/transl_table=11
/product="acyl-CoA dehydrogenase-related protein"
/protein_id="YP_002547065.1"
/db_xref="GI:222106274"
/db_xref="GeneID:7380975"
/translation="MAHDQTLLDATVRIVAEAAPDADRSGQFPWAGIRAVHESGLLES
TVATRYGGQGGTLYDAAHILAALGRGDPSVALISAMTIFNHLGQASRNHWPEDLYQRL
LAEAKQRPLLLNAARVEPELGSPARGGLPATRARRTSTGWSITGRKRFVTGAHGLTHF
LVWAHTDETPTRVGTFIVPNGLPGISVIENWNSLGMRATGSHDVDYSDVEIPLENVLD
LTGTEIAQQDNRGHAAITLALTAIYLGVAEAAQAAFNHFAHDRVPTNLGHPIALTERF
ITLSGEIDLLVGGARQIIFDALLSGQGDAERLMRARLIAGRQLRSAVEIAVRGIGNPG
LNADIGLERHFRDIQAVLVHAPQEDTSLSILGRAAFERWQRQEATPQNSVVKHSILKT
A"
misc_feature complement(<172687..172908)
/locus_tag="Avi_5178"
/note="Acyl-CoA dehydrogenase, N-terminal domain; Region:
Acyl-CoA_dh_N; pfam02771"
/db_xref="CDD:202383"
misc_feature complement(171802..172899)
/locus_tag="Avi_5178"
/note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region:
CaiA; COG1960"
/db_xref="CDD:32143"
misc_feature complement(171868..172641)
/locus_tag="Avi_5178"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
gene complement(173070..174173)
/gene="ssuD"
/locus_tag="Avi_5179"
/db_xref="GeneID:7380976"
CDS complement(173070..174173)
/gene="ssuD"
/locus_tag="Avi_5179"
/codon_start=1
/transl_table=11
/product="sulfonate monooxygenase"
/protein_id="YP_002547066.1"
/db_xref="GI:222106275"
/db_xref="GeneID:7380976"
/translation="MAAEFISASFANGSNDLRPIPDAPVDPDFLQRYARALDDYGFNY
TLIPYSSASFDPFTLGATILAHTKQIKIIVALRPNTIYPTVAAKSLATLDQLSGGRVV
VHFIAGGSDEEQAREGDFLTKEQRYERQEEYIRILRLAWTSTEPFDFDGKYYQFKQFR
SAVRPTNGLIPISLGGSSDAAYRIGGSLCDIFGLWGEPLAETKQQIDRIYAEAAKAGR
KDRPRIWVTFRPIIAETDELAWQKAHRILDTLNENREKGLSRTPLSAPPPANVGSQRL
LDIAKRGDVHDRALWYPTVTATNASGATTALVGSPRTIADSILDYIDLGADLISIRGY
DNYNDAVDYGRYVLPLVREGIREREENKKKAAA"
misc_feature complement(173439..174143)
/gene="ssuD"
/locus_tag="Avi_5179"
/note="Alkanesulfonate monoxygenase is the monoxygenase of
a two-component system that catalyzes the conversion of
alkanesulfonates to the corresponding aldehyde and
sulfite. Alkanesulfonate monoxygenase (SsuD) has an
absolute requirement for reduced flavin...; Region:
Alkanesulfonate_monoxygenase; cd01094"
/db_xref="CDD:29426"
misc_feature complement(173124..174104)
/gene="ssuD"
/locus_tag="Avi_5179"
/note="alkanesulfonate monooxygenase, FMNH(2)-dependent;
Region: alk_sulf_monoox; TIGR03565"
/db_xref="CDD:132604"
misc_feature complement(order(173685..173690,173694..173705,
173709..173711,173826..173831,173838..173840,
173889..173891,173898..173900,173907..173912,
173919..173924,173928..173930,173979..173981,
173988..173993,174000..174002,174009..174026))
/gene="ssuD"
/locus_tag="Avi_5179"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29426"
misc_feature complement(order(173487..173489,173493..173495,
173595..173597,173637..173642,173796..173798,
173856..173858,174015..174017))
/gene="ssuD"
/locus_tag="Avi_5179"
/note="active site"
/db_xref="CDD:29426"
misc_feature complement(173946..173951)
/gene="ssuD"
/locus_tag="Avi_5179"
/note="non-prolyl cis peptide bond; other site"
/db_xref="CDD:29426"
misc_feature complement(order(173439..173456,173475..173486,
173670..173711,173799..173807,173826..173852))
/gene="ssuD"
/locus_tag="Avi_5179"
/note="insertion regions; other site"
/db_xref="CDD:29426"
gene complement(174340..175425)
/locus_tag="Avi_5180"
/db_xref="GeneID:7380977"
CDS complement(174340..175425)
/locus_tag="Avi_5180"
/codon_start=1
/transl_table=11
/product="monooxygenase"
/protein_id="YP_002547067.1"
/db_xref="GI:222106276"
/db_xref="GeneID:7380977"
/translation="MTVIAQSKTSAQPFRTKHRLGFNTRVSFNDIDGPAHGLREGIEL
YQIAEQLGYQSGWAYQRHFDHYLSSPLPFFAAAGQHTKRITLGSAVIPMRYQDPILLA
EAAGTTDLLVGGRLELAISTGANATFDAIFGTSDTDARTEAKRRQARFLAAIAGDVLH
TVDGPGQGAPEGTELRVTPHSPTLRSRIRQGAASLASAVQAAELGIGLITGTVQHDQA
EGESFGAYQARIIEAYRTTWRKTWSTEPPPVAAAASILVGTTSELREKYAAYDLERRT
QGIAASRPKGALQPAFRQPSGSQISPVFQGTPDQVTEAVFNDPGLASADEVILFLPPA
FGLAENVRLLTDLAQTVAPNFGWRPDQ"
misc_feature complement(174358..175371)
/locus_tag="Avi_5180"
/note="putative FMN-dependent luciferase-like
monooxygenase, KPN_01858 family; Region: LLM_KPN_01858;
TIGR04027"
/db_xref="CDD:188542"
misc_feature complement(<175057..175326)
/locus_tag="Avi_5180"
/note="Flavin-utilizing monoxygenases; Region:
Flavin_utilizing_monoxygenases; cl07892"
/db_xref="CDD:213112"
gene complement(175422..177158)
/gene="moaD"
/locus_tag="Avi_5181"
/db_xref="GeneID:7380978"
CDS complement(175422..177158)
/gene="moaD"
/locus_tag="Avi_5181"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002547068.1"
/db_xref="GI:222106277"
/db_xref="GeneID:7380978"
/translation="MAPQDRLTSTLPWFATAAPALQPSAPLLRVEDLSVSYGARQVVT
TVGFELDRGKSLALIGESGSGKSTIARAILRLLPQGGHATGKIEFNDQNILSLAERQF
RPLRGRAIGFVPQDPGNALNPVRTIGAQAMEAAALLGEQDKAIRKALILDTFAEVGLD
NPGRVYDSYPHQLSGGMLQRVLIGLAVLPRPALLVADEPTSALDVTIQKRILDLLTRL
QQDLDISLLLITHDLAIASERADQLVVLKDGVVQEAGNTQAVFAAPASAYARKLHADV
PALNPDRYAKLRDSGFRNIENTAGVDAKIEVKCVTKTFTVDGKSLTAVDNVTFSVPSG
TTHALVGESGSGKTTTIRLLLGLEEPDTGQISVAGEQFSSRNPQSRRAVWRHLQLVYQ
NPFTSLDPTWKIENLVREPLDRFKIGTARERSERVREALSNVGLGEHLLGRKPGALSG
GQRQRVAIARSLVLKPDVIVLDEPTSALDVSVQADIVDVLLTLQANLGLTYVFVSHDL
ALVRQLAHTVSVMHRGRIVEHGTVKAVFDTPRQSYTRSLLASIPSGGNYATQLDSSLD
FKEPVSQKEEIA"
misc_feature complement(175503..177074)
/gene="moaD"
/locus_tag="Avi_5181"
/note="ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only]; Region: COG1123"
/db_xref="CDD:31320"
misc_feature complement(176394..177074)
/gene="moaD"
/locus_tag="Avi_5181"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(176958..176981)
/gene="moaD"
/locus_tag="Avi_5181"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(176466..176468,176565..176570,
176814..176816,176955..176963,176967..176972))
/gene="moaD"
/locus_tag="Avi_5181"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(176814..176825)
/gene="moaD"
/locus_tag="Avi_5181"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(176613..176642)
/gene="moaD"
/locus_tag="Avi_5181"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(176565..176582)
/gene="moaD"
/locus_tag="Avi_5181"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(176547..176558)
/gene="moaD"
/locus_tag="Avi_5181"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(176460..176480)
/gene="moaD"
/locus_tag="Avi_5181"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(175569..176246)
/gene="moaD"
/locus_tag="Avi_5181"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(176115..176138)
/gene="moaD"
/locus_tag="Avi_5181"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(175641..175643,175740..175745,
175983..175985,176112..176120,176124..176129))
/gene="moaD"
/locus_tag="Avi_5181"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(175983..175994)
/gene="moaD"
/locus_tag="Avi_5181"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(175788..175817)
/gene="moaD"
/locus_tag="Avi_5181"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(175740..175757)
/gene="moaD"
/locus_tag="Avi_5181"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(175722..175733)
/gene="moaD"
/locus_tag="Avi_5181"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(175635..175655)
/gene="moaD"
/locus_tag="Avi_5181"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(<175500..175586)
/gene="moaD"
/locus_tag="Avi_5181"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene complement(177137..177985)
/gene="dppC"
/locus_tag="Avi_5182"
/db_xref="GeneID:7380979"
CDS complement(177137..177985)
/gene="dppC"
/locus_tag="Avi_5182"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547069.1"
/db_xref="GI:222106278"
/db_xref="GeneID:7380979"
/translation="MTIAFSSSNGGLQAAKKWSAVHMPPTVFISFAIIALVIAWALAP
GLFTSHSPVIGVPAQKLLAPSAQHWFGTDQLGRDLYARVVYGTASSVTSALIAVVIGV
IVGGLIGLLAGFLGGWVDIVLARLVDMLLAIPSFLLAIIVVTALGFTTTNAAIATGVS
AVAVFARVMRAEVIKTRQATFVEASFLLGGSRWYILLWHVLPNASRSLLTLAVLQFGL
SILVIAGLAFLGYGDPPPASDWGLLISIGKDYLKWPWLVYAPAFAVIATVLSVNRISR
WLRKTD"
misc_feature complement(177149..177847)
/gene="dppC"
/locus_tag="Avi_5182"
/note="nickel ABC transporter, permease subunit NikC;
Region: nickel_nikC; TIGR02790"
/db_xref="CDD:131837"
misc_feature complement(177173..177634)
/gene="dppC"
/locus_tag="Avi_5182"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(177173..177178,177185..177190,
177197..177202,177215..177220,177227..177232,
177260..177265,177302..177307,177314..177325,
177344..177346,177353..177358,177398..177400,
177449..177451,177458..177463,177473..177475,
177479..177484,177491..177493,177497..177499,
177503..177508,177557..177559,177563..177568,
177575..177604,177608..177619))
/gene="dppC"
/locus_tag="Avi_5182"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(177308..177325,177557..177601))
/gene="dppC"
/locus_tag="Avi_5182"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(177230..177232,177260..177262,
177269..177271,177305..177307,177521..177523,
177557..177559))
/gene="dppC"
/locus_tag="Avi_5182"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(177377..177379,177389..177394,
177410..177448))
/gene="dppC"
/locus_tag="Avi_5182"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(177982..178992)
/locus_tag="Avi_5183"
/db_xref="GeneID:7380980"
CDS complement(177982..178992)
/locus_tag="Avi_5183"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547070.1"
/db_xref="GI:222106279"
/db_xref="GeneID:7380980"
/translation="MRNAYLTYAAKRLAQAFVVILMAYVFTFVVVSILPGDPVTSVLR
DPQNGFTEAEIAEIIAAQGLDKPISVQLWTSLSHFVTGDFGLSMRSSRPVAALIAEVL
PSTLILASTALAFALALALVIAYGTQFLPKRFGQGLLRGFPSLFLSVPNFVIGLALIH
IFGFQLGVFRVIEPDSVWATLFASIALGIPVSAQIAEVLIANLDHEASQDYATVARGR
GLSQAQMFFKHLLKPSSLPVVTVIALTVGELLGGSLITETVFGRTGIGSLVQRSVTTQ
DLPVLQAVVSLAAVAFVLVNLIADLVYPLLDPRVKLLGVQRPRTSAEDTSSTETSRAV
TI"
misc_feature complement(178057..178977)
/locus_tag="Avi_5183"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature complement(178210..178599)
/locus_tag="Avi_5183"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(178219..178224,178231..178242,
178261..178263,178270..178275,178315..178317,
178366..178368,178387..178392,178402..178404,
178408..178413,178420..178422,178426..178428,
178432..178437,178516..178518,178522..178527,
178534..178563,178567..178578))
/locus_tag="Avi_5183"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(178225..178242,178516..178560))
/locus_tag="Avi_5183"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(178222..178224,178450..178452,
178516..178518))
/locus_tag="Avi_5183"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(178294..178296,178306..178311,
178327..178365))
/locus_tag="Avi_5183"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(179017..180669)
/locus_tag="Avi_5184"
/db_xref="GeneID:7381321"
CDS complement(179017..180669)
/locus_tag="Avi_5184"
/codon_start=1
/transl_table=11
/product="ABC-type transporter substrate binding protein"
/protein_id="YP_002547071.1"
/db_xref="GI:222106280"
/db_xref="GeneID:7381321"
/translation="MIKHSDSMALSRRRLLLAGSAILSVALVASTGLKPAHSAGNAKD
GGDITFLIDSLGNTWIPNNSAISSFQGHVWGHVADKLVYVDADGKVSPWIAERWDQNE
GATEFTLHLKTGVTFSDGTPLDAAAVVANLDIWYAGRKSEGINPIGLFPKTYDHAEAI
DPSTVKVVFKKPTLGFIPTLGYHGSILISPKTISQPATQQADLGKTSGSGPYVVESWK
EGDFVKLVKRKDYNWGPAAVGHTGPAFLDSITYKLVSEPSLRVAAVQSGQADIAYNAS
PQELKSLKDEGFTVATPRYLGFVNGWAVNTKLEPYNDVRVRQALQSGIDRQEIIDTVY
TSDWKLATSFIQSNVPGATDQSTLLAYDSARAEKLLDDAGWTKGADGIRAKDGKPLLL
TLYSNPYLATSKAVDELIAQQLGKIGWKVNIRTYDVVTFTEKVKFAGPAVPAYEVTRS
FIDAGTVASILTDANNGENWFALDQSDQKINELRDRIAGAPSLEVRDPLLNELQKYVI
EQGYFIPRTQIVQRIYVQSPKLSGEVYNGIAYASYYTAKISQ"
misc_feature complement(179074..180537)
/locus_tag="Avi_5184"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_15; cd08492"
/db_xref="CDD:173857"
misc_feature complement(179353..180405)
/locus_tag="Avi_5184"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene 181293..184463
/locus_tag="Avi_5186"
/db_xref="GeneID:7381322"
CDS 181293..184463
/locus_tag="Avi_5186"
/codon_start=1
/transl_table=11
/product="outer membrane autotransporter"
/protein_id="YP_002547072.1"
/db_xref="GI:222106281"
/db_xref="GeneID:7381322"
/translation="MSKTSSKNFGGTLLKHKNIFPGIVKYLSKSLVFPSITVTAVVSC
SGVSLAQDVVLDSGNTTWTSDTLVDGDLYVGYNNKDIGLTIANGAKVYSTNGYVGYRV
GSSGTVIVSGPGSSWIIPRVNYVLANNITVNQNGTLNIENGGTVDAKYFTFASTSQLN
VTGSGSTLTADRISNSGTVLIANGGSINAIDAEFSGLPADGTDNSLANFVVRGAGSKV
TSTGTLTVGANASIEDGGAIVAQDVGIGTSGSFQNFVVTGAQSRMDVNGTLTVNGGYA
PNSNISIADSANLNVKNGITMATGGHLTIGGKIDLGNLALGGEPKGQAAAAAGYINPD
AVISFGSSERAYLNFNHTQTGYIFANALTGDGNIKSMSGETILTGDLSKFEATDNLGG
IIVDGGSTLVLASNLGTAVTNYDNVFAWQTNIDVKNGTFNVKADTGAIRKNFLGSEYF
SSNIDVWGDRNAGTAFGRLIGSGAVGNVTLEKGALISPGNSDNAIGTFTVNGNISFGE
GSAYDVDIAGNGTSDKIVVQTLKAWTGTDAQNNPTYVDSAGKTSIANNVSVQVTALDA
ATSYQTGQTYTILSSAGGIQGQFAQAISKSAFLDVALAQTSNQVDLTIAVKDTGTPNP
GTPNPGNPDPGTPNPGTPNPGNPDPGTPNPGNPDPGTPNPGTPNPGTPSPGLFDSVAV
TGNQRNVARALNTLQQSGQSLALYNSLLPLSAEEAQHAFEALSGEVHASAMNTLVTSS
TLLRNSVNDRMRASFNTVGARPTPVMAYAEGDSKFDTAYKDIPLFTAWGQGFGTWNSI
DGNGNAADLSSSTGGFVAGLDVPVSADWRLGAVGGYSRSSFDANDRSSFGHSDNYHLG
MYAGAQYGELSFRSGLTYTWHQVSTNRSVAFSGFNDHLKADYDAGSFQAFGELGYRID
VSTVAFEPFANLTHVNVQRDGFNERGGIAALSSPSDSLDTTLTTLGLRASSDFMLGGY
IAKARGMLGWQHAFGDTDPTSRLAFVGSQSYVVSGTPLTKDAAVVELGLDVGLSDTAT
IGIGYSGEFGSNETSNSINAKLDVRF"
misc_feature 183645..184403
/locus_tag="Avi_5186"
/note="Autotransporter beta-domain; Region:
Autotransporter; pfam03797"
/db_xref="CDD:202770"
gene 184463..184990
/gene="invB"
/locus_tag="Avi_5187"
/db_xref="GeneID:7381323"
CDS 184463..184990
/gene="invB"
/locus_tag="Avi_5187"
/codon_start=1
/transl_table=11
/product="Invasion protein B"
/protein_id="YP_002547073.1"
/db_xref="GI:222106282"
/db_xref="GeneID:7381323"
/translation="MKIAKIVAIMVAANAASTVAFSQDSNGRPNAPSSLSETYEDWTV
ACSKRNESRVCSTFQRQVQQNGQQVLGIELTPAADKSIKGSLVLPFGLDLDKGVAFAI
DDTPPGKSSRFSTCVPSGCLVSLTFTDKGANALKSGKSLKLIAYAYGGGAEVPFTISL
KGLASGLDRIAVLSK"
misc_feature 184577..184972
/gene="invB"
/locus_tag="Avi_5187"
/note="Invasion associated locus B (IalB) protein; Region:
IalB; pfam06776"
/db_xref="CDD:148401"
gene 185225..185887
/locus_tag="Avi_5188"
/db_xref="GeneID:7381324"
CDS 185225..185887
/locus_tag="Avi_5188"
/codon_start=1
/transl_table=11
/product="two component response regulator"
/protein_id="YP_002547074.1"
/db_xref="GI:222106283"
/db_xref="GeneID:7381324"
/translation="MTDEFIIIADDHPIFREGIFALVRQLLPHSKIASTDTLDAALEI
ARANPFPPSMFILDLFFEGNNIVSNLRALREEFRLASIVVVTMASDKALVDTVMNAGI
NGFINKAALPDEIKEILRAVREGDVVVQVPVSTNAIASYASPALSQRQLDVLHLLAEG
RTNKEIAIILGISPFTVRIHVSAIFRALGVATRAGAVTKGIAMGLVPTSPGSSERSSN
SR"
misc_feature 185240..185842
/locus_tag="Avi_5188"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:32379"
misc_feature 185243..185590
/locus_tag="Avi_5188"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(185252..185257,185396..185398,185420..185422,
185480..185482,185537..185539,185546..185551)
/locus_tag="Avi_5188"
/note="active site"
/db_xref="CDD:29071"
misc_feature 185396..185398
/locus_tag="Avi_5188"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(185405..185410,185414..185422)
/locus_tag="Avi_5188"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 185546..185554
/locus_tag="Avi_5188"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 185660..185827
/locus_tag="Avi_5188"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature order(185663..185671,185708..185716,185738..185743,
185747..185752,185756..185770,185801..185803)
/locus_tag="Avi_5188"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature order(185696..185698,185702..185704,185708..185710,
185801..185809,185816..185818,185825..185827)
/locus_tag="Avi_5188"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene complement(185858..187477)
/locus_tag="Avi_5189"
/db_xref="GeneID:7381325"
CDS complement(185858..187477)
/locus_tag="Avi_5189"
/codon_start=1
/transl_table=11
/product="Signal transduction histidine kinase"
/protein_id="YP_002547075.1"
/db_xref="GI:222106284"
/db_xref="GeneID:7381325"
/translation="MRNDASFDTERAQAIMRIAVIFITAAYVMPLVANGATPPEGQSF
YWLFAIYIPYSFLLLLWIVLRPGVNMLRRTLVTLLDYTFTTFAMSVGGAPLFPIAALV
VWHTVVSGLRFGPRHLLPATALALSSFAIATYFNVYWQQNPYVVLTFIMMAILAPSYT
LAFLLRLQSAYAAEQEANLSKSRFLAHASHDLRQPIHAISLFTACLRDAGLKQEELAM
VDNIDRSLQSVSRLFKSLLDISTLDSGKLIPQMETVPIADILNEVVDQNMEAAQKAGS
QIRLVNCTHFVAVDRSLLNTILQNILSNAIKYAGGRKILIGCRRRGGSLTIQVYDQGP
GIAPEHHLRIFEEFYQVRERGDKDVDGVGLGLAIVKRLGTLMGLQVSLRSVVGAGTAI
SVSGLKIAVPMKVLSAEQIISPVANPAHGLRVLLVEDDEAVLLATASLLRKWGCTVQA
ETAIPSVLHHCDLLITDFDLGGRMTGTECIAKVRQLAGWKVPAVVMTGHAPSRVIEDI
ADSDIPILSKPVRPAELRSAILLPGIGAPLR"
misc_feature complement(186293..187348)
/locus_tag="Avi_5189"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG4585"
/db_xref="CDD:34223"
misc_feature complement(186758..186946)
/locus_tag="Avi_5189"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(186770..186772,186782..186784,
186791..186793,186803..186805,186812..186814,
186824..186826,186872..186874,186881..186883,
186893..186895,186902..186904,186914..186916,
186926..186928))
/locus_tag="Avi_5189"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(186908..186910)
/locus_tag="Avi_5189"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(186293..186598)
/locus_tag="Avi_5189"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(186302..186304,186308..186313,
186326..186328,186332..186334,186380..186391,
186470..186475,186479..186481,186485..186487,
186491..186493,186557..186559,186566..186568,
186578..186580))
/locus_tag="Avi_5189"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(186566..186568)
/locus_tag="Avi_5189"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(186383..186385,186389..186391,
186473..186475,186479..186481))
/locus_tag="Avi_5189"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature complement(185891..186166)
/locus_tag="Avi_5189"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cl09944"
/db_xref="CDD:209106"
misc_feature complement(order(185921..185926,185933..185935,
185987..185989,186050..186052,186077..186079))
/locus_tag="Avi_5189"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(186077..186079)
/locus_tag="Avi_5189"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(186050..186058,186065..186070))
/locus_tag="Avi_5189"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(185918..185926)
/locus_tag="Avi_5189"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(187946..190129)
/gene="katA"
/locus_tag="Avi_5190"
/db_xref="GeneID:7381326"
CDS complement(187946..190129)
/gene="katA"
/locus_tag="Avi_5190"
/codon_start=1
/transl_table=11
/product="catalase"
/protein_id="YP_002547076.1"
/db_xref="GI:222106285"
/db_xref="GeneID:7381326"
/translation="MDTKVETGGKCPVAHGPAGAKGRGNRDWWPEQLDVQILHQKNKI
ADPMGPDFDYAEEFRKLDYEALKSDLHALMTDSQDWWPADFGHYGGLFVRMAWHSAGT
YRITDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLFILTGN
VALESMGFKTFGFAGGRADTWEPEELFWGPEGTWLGDERYSGERQLSEPLGAVQMGLI
YVNPEGPNGNPDPIAAARDIRETFSRMAMNDEETVALIAGGHTFGKTHGAGDPSLIGA
EPEGGALEDQGLGWKSKFGTGFGADTITGGPEVTWTQTPTRWSNFFFENLFNFEWELT
KSPAGAHQWKAKNAEPSIPDAHDPSKKHLPTMLTTDLSLRFDPAYEKISRRFLENPDQ
FADAFARAWFKLTHRDMGPKVRYVGPEVPSEDLIWQDVIPPVDHPLVDDRDVADLKAK
VIASGLSVQELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWDVNHPAQLAKVLSV
LEGFQQEFNAGQSAGKKISLADLIVLAGAAGVEKAAKAGGHDVTVPFTPGRTDASQEQ
TDVASFNALKPRADAFRNYLSGHQFMKPEEALVDRARLLTLTAPEMTVLIGGLRVLKA
GQPEHGVLTRNPEALTNDFFVNLLDMRTQWAPVAGKEGVYEGRDRKSGELLWTGTRVD
LIFGSHSQLRALAEVYAQSDIKEKFVKDFVAAWTKVMNADRFDLV"
misc_feature complement(187952..190111)
/gene="katA"
/locus_tag="Avi_5190"
/note="catalase/hydroperoxidase HPI(I); Provisional;
Region: PRK15061"
/db_xref="CDD:185021"
misc_feature complement(188855..190072)
/gene="katA"
/locus_tag="Avi_5190"
/note="N-terminal catalytic domain of
catalase-peroxidases; Region: catalase_peroxidase_1;
cd00649"
/db_xref="CDD:173824"
misc_feature complement(order(189266..189274,189278..189283,
189293..189295,189299..189301,189548..189556,
189569..189574,189575..189577,189581..189589,
189677..189679,189689..189694,189701..189703,
189713..189715,189722..189724,189758..189763,
189767..189778,189890..189892,190013..190015,
190028..190030,190034..190036,190043..190051,
190055..190072))
/gene="katA"
/locus_tag="Avi_5190"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173824"
misc_feature complement(order(188927..188929,188939..188941,
189023..189025,189029..189031,189197..189199,
189215..189220,189332..189346,189350..189355,
189362..189367,189404..189406,189464..189466,
189470..189472,189839..189841,189848..189853,
189857..189862))
/gene="katA"
/locus_tag="Avi_5190"
/note="active site"
/db_xref="CDD:173824"
misc_feature complement(order(188927..188929,188939..188941,
189023..189025,189029..189031,189197..189199,
189215..189220,189332..189346,189350..189355,
189362..189367,189404..189406,189464..189466,
189470..189472,189839..189841,189848..189853,
189857..189862))
/gene="katA"
/locus_tag="Avi_5190"
/note="heme binding site [chemical binding]; other site"
/db_xref="CDD:173824"
misc_feature complement(187961..188845)
/gene="katA"
/locus_tag="Avi_5190"
/note="C-terminal non-catalytic domain of
catalase-peroxidases; Region: catalase_peroxidase_2;
cd08200"
/db_xref="CDD:173828"
gene complement(190980..191459)
/locus_tag="Avi_5192"
/db_xref="GeneID:7381327"
CDS complement(190980..191459)
/locus_tag="Avi_5192"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547077.1"
/db_xref="GI:222106286"
/db_xref="GeneID:7381327"
/translation="MITGSLHHWQFYRATLPACIISAIEAVTALDLPNLPTGRHEIDG
EDIFLLIQELSTKPANQLRPEAHRRYIDIQILLEGREAYGVAFPDPHLVPIDDRLETQ
DIAFYPARPSEYSVELSADDFIVFFPGEFHRPCCEIGAPLAIRKAVIKIDARLLASH"
misc_feature complement(191004..191459)
/locus_tag="Avi_5192"
/note="Domain of unknown function (DUF386); Region:
DUF386; cl01047"
/db_xref="CDD:186309"
gene complement(191548..192489)
/gene="dapA"
/locus_tag="Avi_5193"
/db_xref="GeneID:7381328"
CDS complement(191548..192489)
/gene="dapA"
/locus_tag="Avi_5193"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate synthase"
/protein_id="YP_002547078.1"
/db_xref="GI:222106287"
/db_xref="GeneID:7381328"
/translation="MMTSKAQSIQGIIPVMLTPFLEDGQIDYPGLERLIEWYVANGSG
ALFAVCQSSEMMFLSLDERMALGRFVVEKAAGRLPVVVSGHISDDLDKQIEELQAMSR
VGADGLILVTNHLDPKKEGTAVFKATLDKLLSVLPEDLPLGLYECPAPYRRLLSDEEL
TYCAHTGRFIMLKDVSCDLDTVKRRLELTKGTPLKILNANAAIAWDAMKAGVPGFNGV
FTNFHPDLYNWLWREGEKHPQLAEELATFLVLSAVSEALGYPALAKLYHQRIGTFDSI
RCRVIDYDIRERFWALDAVLDKIIDGTEHFRNRIAKL"
misc_feature complement(191653..192477)
/gene="dapA"
/locus_tag="Avi_5193"
/note="Dihydrodipicolinate synthase/N-acetylneuraminate
lyase [Amino acid transport and metabolism / Cell envelope
biogenesis, outer membrane]; Region: DapA; COG0329"
/db_xref="CDD:30677"
misc_feature complement(191677..192456)
/gene="dapA"
/locus_tag="Avi_5193"
/note="Dihydrodipicolinate synthase family; Region:
DHDPS-like; cd00408"
/db_xref="CDD:188630"
misc_feature complement(order(191971..191973,192055..192057,
192334..192342,192349..192351,192445..192447))
/gene="dapA"
/locus_tag="Avi_5193"
/note="inhibitor site; inhibition site"
/db_xref="CDD:188630"
misc_feature complement(order(191842..191844,191971..191973,
192055..192057,192334..192342,192349..192351))
/gene="dapA"
/locus_tag="Avi_5193"
/note="active site"
/db_xref="CDD:188630"
misc_feature complement(order(192118..192120,192127..192129,
192145..192150,192220..192225,192319..192324,
192337..192339))
/gene="dapA"
/locus_tag="Avi_5193"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188630"
misc_feature complement(191971..191973)
/gene="dapA"
/locus_tag="Avi_5193"
/note="catalytic residue [active]"
/db_xref="CDD:188630"
gene complement(192570..193880)
/locus_tag="Avi_5194"
/db_xref="GeneID:7381329"
CDS complement(192570..193880)
/locus_tag="Avi_5194"
/codon_start=1
/transl_table=11
/product="Permeases of the major facilitator superfamily"
/protein_id="YP_002547079.1"
/db_xref="GI:222106288"
/db_xref="GeneID:7381329"
/translation="MSTIVSSEPSAPLGSTQAKAPPRIRRMQITSLCLLVVAGVINYM
DRGTLAVANHRITEDMGLTLGEMGLLLSAFSWSYALAQLPVGAMVDRLGPRRLLGFGL
VFWSLAQAAGGFVTSFTQFILSRIGLGIGEAPQFPSAARVVSNWFPVSKRGVPTGIFN
SASPLGTAIAPLLLTQLLIVLDWRWVFIITGAAGLVMAAFWFMLYRDPKDMGLTAEER
SYLSSETEEKQQKVTLADWGQLFSYRATWGMILGYFGNVYLNWVYLSWLPSYLVNERH
MSLARTGFMASVPFFCGFIGCLVAGWLSDKIIKKTEASPVRGRRIPVVIAMLGMAAFT
VPAALVADNNIAIFCISVVIFLTNAASACSWALVTAVAPKNRVASLGSLQNFGGFLGG
SLAPIATGFIAEYSSFVPALLTGAAIAFVGAASYFFLVREPMDQ"
misc_feature complement(192591..193781)
/locus_tag="Avi_5194"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(192591..193772)
/locus_tag="Avi_5194"
/note="D-galactonate transporter; Region: 2A0114;
TIGR00893"
/db_xref="CDD:162094"
misc_feature complement(order(192705..192707,192714..192719,
192726..192731,192738..192743,192774..192776,
192783..192788,192798..192800,192807..192812,
192819..192821,192990..192992,193002..193004,
193011..193013,193023..193025,193035..193037,
193077..193079,193086..193091,193098..193103,
193110..193112,193380..193382,193398..193403,
193410..193415,193449..193451,193458..193463,
193470..193475,193482..193487,193623..193628,
193632..193637,193647..193649,193656..193661,
193668..193670,193719..193724,193728..193736,
193743..193745))
/locus_tag="Avi_5194"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 194252..195328
/locus_tag="Avi_5195"
/db_xref="GeneID:7381330"
CDS 194252..195328
/locus_tag="Avi_5195"
/codon_start=1
/transl_table=11
/product="transcriptional regulator LacI family"
/protein_id="YP_002547080.1"
/db_xref="GI:222106289"
/db_xref="GeneID:7381330"
/translation="MTGTPEQPGSPVKRTREGSGRARLEEVARRACVSTATVSRAFNT
PERVSPETRERIFSTAKALGWVPNAAGRALASNRTHIAGVIIPTLDNEIFSHQVGAMQ
RVFAEHGLNLLIACSNYDPELGFQQAKAMIERGVEALALAGESHPQALYDNLDNLDIP
YVLTYAYRQGASHAMVGFDNAAAFARMTDYLLGLGHRRIAVVMQPKDNNDRVVARLSG
ITAALSAAGLELSPDHLISDKASLDFGIESAKRLAQEPTDIRPTAIICGNDTLALGVL
MGLAQMGASVPGDFSVTGFDDLELSSRLSPALTTMFVDNKEIGRIAAEQLVLCLGGEI
ASPQSREISVSLHIRESTAAPQTR"
misc_feature 194315..195319
/locus_tag="Avi_5195"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature 194327..194479
/locus_tag="Avi_5195"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature order(194348..194362,194366..194371,194378..194380,
194393..194398,194405..194407,194444..194446,
194453..194455,194462..194467,194471..194476)
/locus_tag="Avi_5195"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature 194444..194473
/locus_tag="Avi_5195"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature 194498..195304
/locus_tag="Avi_5195"
/note="Type 1 periplasmic binding fold superfamily;
Region: Periplasmic_Binding_Protein_Type_1; cl10011"
/db_xref="CDD:209116"
gene 195955..196950
/locus_tag="Avi_5196"
/db_xref="GeneID:7381331"
CDS 195955..196950
/locus_tag="Avi_5196"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547081.1"
/db_xref="GI:222106290"
/db_xref="GeneID:7381331"
/translation="MSYALSLLDKSPVEPGAVAADALKATVALALRAEDLGYRRFWLA
EHHNLPALASSAPEALIAYLLARTSRLRIGSGGIMLQHYSAYKVAETFNLLAALAPGR
VDLGVGKAPGGFPYATHALQAGRKAAAPADFEEQLEDLNRYLLTDAAAANALLATPVP
PVPAERFLLGASVASAKLAAAKGWTLVFAGHLNGDQHNLQETFDVYRRETGGKVPVLA
LAALATDAEETARSLVADIKIFKVILANGQSVNVGNAEQAAEFARQSGVSDYRVEEKT
PHVLAGTGEQVRKELDALHATLGVSEFIIDIPVPQSALRLNAIELIAGSRLSLAA"
misc_feature 195967..196923
/locus_tag="Avi_5196"
/note="luciferase family oxidoreductase, group 1; Region:
oxido_grp_1; TIGR03558"
/db_xref="CDD:211837"
misc_feature 196048..>196275
/locus_tag="Avi_5196"
/note="Flavin-utilizing monoxygenases; Region:
Flavin_utilizing_monoxygenases; cl07892"
/db_xref="CDD:213112"
gene 197025..198317
/locus_tag="Avi_5198"
/db_xref="GeneID:7381332"
CDS 197025..198317
/locus_tag="Avi_5198"
/codon_start=1
/transl_table=11
/product="monooxygenase"
/protein_id="YP_002547082.1"
/db_xref="GI:222106291"
/db_xref="GeneID:7381332"
/translation="MNAWKHPSVPADASVNFSFYVETARKAEAAGLAFAFVADGLYIN
EHSIPHFLNRFEPIAILSALAASTSKIGLVGTISTSYSDPFTVARQFASIDHISGGRA
GWNAVTTPLEGSGRNYSREHPEHSLRYQIAEEYLDVVKGLWDSWDDDAFVRDRDTGAF
FDREKLHRLDHKGRFFRVEGPLNIGRSRQGQPVVFQAGSSDSGIHLAGKHADAVFTNG
ASFEEGQAFAKQVKQSAIAQGRSASDVLIFPGIGPIVGATQEEADEKYRAISALVTIE
EALLFLGRFFDHHDFRRYPLDEPFPELGDLGKNSFRSTTDKIKKNAREKGQTLREVAL
EAATPRSTFVGTPDRIADEIIRWVDGGAADGFILGFPVITEGLDDFVAHVLPRLEARG
YFDRTLQGDTLRDHLGLPFRESRYAATSADKATTRAAS"
misc_feature 197025..198242
/locus_tag="Avi_5198"
/note="FMN-dependent oxidoreductase, nitrilotriacetate
monooxygenase family; Region: FMN_nitrolo; TIGR03860"
/db_xref="CDD:200332"
misc_feature 197025..198206
/locus_tag="Avi_5198"
/note="nitrilotriacetate monoxygenase oxidizes
nitrilotriacetate utilizing reduced flavin mononucleotide
(FMNH2) and oxygen. The FMNH2 is provided by an
NADH:flavin mononucleotide (FMN) oxidorductase that uses
NADH to reduce FMN to FMNH2; Region:
Nitrilotriacetate_monoxgenase; cd01095"
/db_xref="CDD:73245"
misc_feature order(197184..197186,197343..197345,197406..197408,
197625..197630)
/locus_tag="Avi_5198"
/note="active site"
/db_xref="CDD:73245"
misc_feature 197250..197255
/locus_tag="Avi_5198"
/note="non-prolyl cis peptide bond; other site"
/db_xref="CDD:73245"
gene 198440..199651
/locus_tag="Avi_5199"
/db_xref="GeneID:7381333"
CDS 198440..199651
/locus_tag="Avi_5199"
/codon_start=1
/transl_table=11
/product="hippurate hydrolase"
/protein_id="YP_002547083.1"
/db_xref="GI:222106292"
/db_xref="GeneID:7381333"
/translation="MNIAIDSHLGQDRVAKKIRAYLDEIIAFRRELHQNPELAFQEKR
TSNLVVSYLASFGYQVEHGIAGTGIVASLKKGSGSRIIGLRADMDALPIHEATGLAHA
SRTKGVMHACGHDGHTAILVAAARYLAETSKFDGTVRLIFQPAEEIGAGAKKLLAEGL
FERFPVDAVFGLHNWPDVPAGHFGFVPGPAMASVDQAHITVVGKGGHGAEPHRGVDPV
LASASLITALQSIVSRNVDPREMAVITVGSIHGGSASNVIPESVDLKLTVRTFSEDVR
QQLSERIPALARAQAESFGARAEVDYRFGFPPVLNHADETAFARQVAVQTFGDDRVIA
HFKPRTASEDFAFLLQARPGSYLFVGNGDSAPLHSASYDFNDEIILPAAHYWVRLVES
YLSSPVSTATL"
misc_feature 198485..199621
/locus_tag="Avi_5199"
/note="Metal-dependent
amidase/aminoacylase/carboxypeptidase [General function
prediction only]; Region: AbgB; COG1473"
/db_xref="CDD:31662"
misc_feature 198506..199612
/locus_tag="Avi_5199"
/note="M20 Peptidase Aminoacylase 1 subfamily; Region:
M20_Acy1_like1; cd05666"
/db_xref="CDD:193542"
misc_feature order(198773..198775,198779..198781,198878..198880,
198956..198958,199541..199543)
/locus_tag="Avi_5199"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193542"
misc_feature order(199025..199027,199091..199096,199106..199108,
199115..199117,199124..199126,199175..199195,
199205..199210,199214..199216,199232..199240)
/locus_tag="Avi_5199"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:193542"
gene 199667..200209
/locus_tag="Avi_5200"
/db_xref="GeneID:7381334"
CDS 199667..200209
/locus_tag="Avi_5200"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_002547084.1"
/db_xref="GI:222106293"
/db_xref="GeneID:7381334"
/translation="MTDTFVYTSPLDPLAKPLIDDLIREYDSRYGTFFSAEGAVEEIN
RYPAEAFQPPFGTFLLLLRDGQPISGGAFKFYDETTAEFKRIWTHPDYRRQGLARIVL
EELEAQAARQGYERIYLTTGFRQPEAVGLYLKNGYSALFDPAVDPEIHRTLPFEKDIR
HLAVGDEKPQLRPERRAVSV"
misc_feature 199727..200077
/locus_tag="Avi_5200"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_10; pfam13673"
/db_xref="CDD:205850"
misc_feature 199838..200026
/locus_tag="Avi_5200"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(199922..199930,199958..199963)
/locus_tag="Avi_5200"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 200255..202018
/locus_tag="Avi_5203"
/note="ABC transporter nucleotide binding/ATPase; Stop in
Frame (pseudogene)"
/pseudo
/db_xref="GeneID:7381335"
gene 202072..203010
/locus_tag="Avi_5205"
/db_xref="GeneID:7381336"
CDS 202072..203010
/locus_tag="Avi_5205"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="YP_002547085.1"
/db_xref="GI:222106294"
/db_xref="GeneID:7381336"
/translation="MTFRKILPGLALAAFTAFAANSAFAADKFDLSPDISNRVRAEKN
QAAIAAIKPGFKFTTPGKFTVAVSPFDPPVVTYASDAKTILGADPDLAQLLADSLGLE
LEIVPVAWADWPLGIASGKYDAVISNVTVTEQRKEKYDFSTYRRDLLGFYVAKNSPIT
DIKEPKDVAGLKLITSSGTNQEKIILDWDRQNVAAGLKPIEVQYYEDSAASDLALQSG
RADVRFNTNASQAYGSLIKGNTRLVGNVNGGWPLTADIATVTRKDAGLADALTIATNA
LIKDGKYAEVLKRWNLTAEAIPESRTNPPGLPKSGS"
misc_feature 202261..202941
/locus_tag="Avi_5205"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature 202261..202941
/locus_tag="Avi_5205"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature order(202282..202284,202399..202401,202474..202476,
202609..202611,202747..202749)
/locus_tag="Avi_5205"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature order(202696..202698,202708..202710,202726..202728)
/locus_tag="Avi_5205"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature 202819..202836
/locus_tag="Avi_5205"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene 203068..204003
/locus_tag="Avi_5206"
/db_xref="GeneID:7381337"
CDS 203068..204003
/locus_tag="Avi_5206"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="YP_002547086.1"
/db_xref="GI:222106295"
/db_xref="GeneID:7381337"
/translation="MNHATRRISRALAALMLLLQAISPVLAEPFDLSPQQPGRLHVER
DAKAVAALPANYKFVSPGTLTVAVAVGSPPIAAYATDASTVVGFDPDLALLLAESLGL
KLDLVSVAWADWPLGLASGKYDAVISNVGVTEQRKQKFDFSTYRYGLHGFYVKNDSPI
TALKEQKDVAGLRIIVASGTIQERILLEWDKQNRANGLKPLELQYYDDEAAADLALQS
GRADANFGPNAMQAWQAATLHRKRLVGTVNAGWPLTADVGVTTRKGSGLAEPIAVAIN
DLIAGGTYQAALSRWGLSQEGLTQSQVNPPGLPSY"
misc_feature 203257..203943
/locus_tag="Avi_5206"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature 203257..203943
/locus_tag="Avi_5206"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature order(203281..203283,203398..203400,203473..203475,
203608..203610,203746..203748)
/locus_tag="Avi_5206"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature order(203695..203697,203707..203709,203725..203727)
/locus_tag="Avi_5206"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature order(203818..203829,203836..203841)
/locus_tag="Avi_5206"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene 204047..205126
/locus_tag="Avi_5208"
/db_xref="GeneID:7381338"
CDS 204047..205126
/locus_tag="Avi_5208"
/codon_start=1
/transl_table=11
/product="monooxygenase"
/protein_id="YP_002547087.1"
/db_xref="GI:222106296"
/db_xref="GeneID:7381338"
/translation="MAIAINHIGFLIPGNYPERDPLSGLETTLNLFEFGEHLGFDSAW
VRHRHLEPGISSAAVFLAAASQRTRRIEIGTAVIPLGYESPFRLAEDLALADVLSAGR
LNIGVSAGLPAHLELIGKKVFDGDWTTYDFSHNRVLRLIDNLRSDYLGGEDTRLKTPF
GPQRPRLQPHAKGLIDRIWYGGGSIASARWAGSNGLNLLIGNVTSGEDTDNFYEAQAR
QLSLYRAAGGSASRVALGRVIVPLDSADAPTRRKYLDFAAGRLERTLHPNGERRTLFP
RDLVGSSDDILEWLHADPILSEVTELRLELPYEFEQDEYRQILQDFVTKIAPGLGWQA
RNVDGTQALGSALDHSHTRSARQTH"
misc_feature 204080..204997
/locus_tag="Avi_5208"
/note="Coenzyme F420-dependent N5,N10-methylene
tetrahydromethanopterin reductase and related
flavin-dependent oxidoreductases [Energy production and
conversion]; Region: COG2141"
/db_xref="CDD:32324"
misc_feature 204119..>204379
/locus_tag="Avi_5208"
/note="Flavin-utilizing monoxygenases; Region:
Flavin_utilizing_monoxygenases; cl07892"
/db_xref="CDD:213112"
gene complement(205200..206522)
/gene="envZ"
/locus_tag="Avi_5209"
/db_xref="GeneID:7381339"
CDS complement(205200..206522)
/gene="envZ"
/locus_tag="Avi_5209"
/codon_start=1
/transl_table=11
/product="two component sensor kinase"
/protein_id="YP_002547088.1"
/db_xref="GI:222106297"
/db_xref="GeneID:7381339"
/translation="MFRNLRAVPRTLRGQITVIILLALVTVIATGRALENVAQNDYAI
PNLESTATQVRTLALLLAQASPEERTSILTNAQRAGLEVSLQPISLADKFKTSPEFQG
FAETLVDFLFPPDGEPPLGGWRAFLDGRRVFAEKVDDRTMLVFFGLPDTILTTSFLSQ
TTYYFIAVVVLIAFFFAFAIRAVTEPIKRISEAAIKSDINNSSQIFEERGTVEILSLA
RALNGMRNRIRIMVDGRTRMLRGISHDVRTPLTRLRLRSERMEAGALREALLTDIDHI
DDLLTESLNYLRDDFATEGIERVDVASILQTVCSDFSDIGFDVEYQGPNKLIANCRPL
SIMRAVTNLCDNATKFGKTILVKLQVSGTVFSILVIDDGPGIPKDLREKVFEPFFKGD
ASRSKRAGFGLGLSIVADIAHAHQSKITLLSNHPTGLIVRIDIPQLAL"
misc_feature complement(205836..205973)
/gene="envZ"
/locus_tag="Avi_5209"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:198627"
misc_feature complement(order(205839..205844,205851..205856,
205860..205865,205872..205877,205881..205886,
205932..205934,205938..205943,205950..205955,
205959..205964,205971..205973))
/gene="envZ"
/locus_tag="Avi_5209"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(<205719..205820)
/gene="envZ"
/locus_tag="Avi_5209"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(205755..205757,205764..205766,
205776..205778,205785..205787,205797..205799,
205809..205811))
/gene="envZ"
/locus_tag="Avi_5209"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(205791..205793)
/gene="envZ"
/locus_tag="Avi_5209"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(205218..205517)
/gene="envZ"
/locus_tag="Avi_5209"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(205230..205232,205236..205241,
205254..205256,205260..205262,205308..205319,
205395..205400,205404..205406,205410..205412,
205416..205418,205476..205478,205485..205487,
205497..205499))
/gene="envZ"
/locus_tag="Avi_5209"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(205485..205487)
/gene="envZ"
/locus_tag="Avi_5209"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(205311..205313,205317..205319,
205398..205400,205404..205406))
/gene="envZ"
/locus_tag="Avi_5209"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(206515..207240)
/gene="petR"
/locus_tag="Avi_5210"
/db_xref="GeneID:7381340"
CDS complement(206515..207240)
/gene="petR"
/locus_tag="Avi_5210"
/codon_start=1
/transl_table=11
/product="two component response regulator"
/protein_id="YP_002547089.1"
/db_xref="GI:222106298"
/db_xref="GeneID:7381340"
/translation="MSDAPKILIVEDDEQIAGMVRDSLNEQGMLVEVAADGAAMDAKM
RALEFDLVVLDVMLPGEDGFSICRRLRGSGDIPILMLTSVSSDIDRVVGLEIGADDYV
TKPFVLRELTARIKGLLRRSRVTSQRPDSLRKSFFRFDGWQVDPARRQLHDPSHARVA
MTTHEFDLLLAFCQNPGRVLTREQLLSATHAGLAGPIERSIDVHISRLRQKIEKDPRD
PALLKTVRLGGYVFTATVEEVHV"
misc_feature complement(206539..207228)
/gene="petR"
/locus_tag="Avi_5210"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature complement(206884..207219)
/gene="petR"
/locus_tag="Avi_5210"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(206926..206931,206938..206940,
206995..206997,207052..207054,207076..207078,
207205..207210))
/gene="petR"
/locus_tag="Avi_5210"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(207076..207078)
/gene="petR"
/locus_tag="Avi_5210"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(207052..207060,207064..207069))
/gene="petR"
/locus_tag="Avi_5210"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(206923..206931)
/gene="petR"
/locus_tag="Avi_5210"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(206545..206832)
/gene="petR"
/locus_tag="Avi_5210"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature complement(order(206554..206556,206569..206571,
206605..206610,206632..206634,206641..206643,
206695..206700,206755..206757))
/gene="petR"
/locus_tag="Avi_5210"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 207483..208559
/locus_tag="Avi_5211"
/db_xref="GeneID:7381341"
CDS 207483..208559
/locus_tag="Avi_5211"
/codon_start=1
/transl_table=11
/product="HlyD family secretion protein"
/protein_id="YP_002547090.1"
/db_xref="GI:222106299"
/db_xref="GeneID:7381341"
/translation="MLRRMILCTTGVLAVFLTACSDEASTPKTPRAIKGVTVKSELIG
EVFRQTGEIRPRYETPMSFRIDGLVAFRVETGSSVKKDDVLATVEKTPALINVASASA
QVDAAKSDLALADVNAARNWNLIAKNAVSRAQVQQSDANLQAAKSKLEVANATLASAQ
QNLSYTDLKAGRDGIVSGVSINVGQVVTTGQTVLTLSSDTELDAVFDVPEQMLTQNLG
DSEVDVSLMSNPAVVAKGKVREVTPSADTATRTYRVKVTLNGTLDGAPLGAVVTGKVT
LSPKPVFKVPASALTSQGQNQAVFVYLPTSKMLQLRPVKIERYGENDMLISEGLADGD
IVAIAGVSKLRDGEAVTLEKGVQS"
misc_feature 207588..208535
/locus_tag="Avi_5211"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
misc_feature 207984..208286
/locus_tag="Avi_5211"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene 208556..211660
/locus_tag="Avi_5212"
/db_xref="GeneID:7381342"
CDS 208556..211660
/locus_tag="Avi_5212"
/codon_start=1
/transl_table=11
/product="AcrB/AcrD/AcrF family protein"
/protein_id="YP_002547091.1"
/db_xref="GI:222106300"
/db_xref="GeneID:7381342"
/translation="MSEQSSQSRPRFNLSKWALDHQSLVIFLMLAAVLSGILSYQKLS
RNEDPPFTIKTMVVGARWPGASAADTVNLLTDKLEKKLSETPHLDYTQSYTRPGQSVI
MVNLRDDTPPSEVEGVWYTVRKKMADISSILPEGVEGPAFDDEFGDTYGSIYAFRAEG
FSQRELRDRVEAIRSEILSLPDIGKVNILGAQDEQIVIEFSQSKLASLDIDPSSAIEA
IRAQNSVNPIGTVQTSEENISVRVTGAFASEDSLKDITLKLGSRYFRLDSIATISRTI
TDPPAASVRVNGKEVIALAVSMAKDGNLLSFGEALKDRMHAIASKLPYGIEMIQVADQ
STVVRDAVNGFMKVLVEAIIIVLAVSFISLGARAGLVITASIPLVLALTFLGMELTGV
GLQRISLGALIIALGLLVDDAMITVESMVSCLEKGRSRLVAATHAYETTAFPMLTGTL
VMIAGFIPVGFAASSAGEYTFSLFMVILIALSSSWIVAVLFSPILGTWILPRSLAHTH
KKTGIVMATYRKILGWNLQHRWLTILFAVAAFALSLAGLGQLKQQFFPASDRPELLVG
LTLPQNASRAATDIRARELEAVLRTDRDIDHFITYVGSGSIRFYLPMDLQLDNDNVTE
TVVVAKSVEKREAVRRKIEAVLNERFSDLVTRVSPLELGPPVGWPLKFRVSGPDYQQV
RALSAKVAAIIGQNPDTRDVNLTAGEPQKSVTIKVNQIEARALGMSSESIASEIAAVF
SGSKVTTVRDKDKLVDVMVKGVEADRNSVSTTGNLELRTGDGNYVPLRQVASVAYGME
DPIIWRQQGKPMIIVQADVQKNALAATVAMQADAQLNALRSELPMGYSIIAGGITEES
EKGNSSIYAVIPVMLFAIAVLLMVQMQSFSRMALAVFMAPFGLIGVVAAMWPTGTPMG
FVAQLGVIALSGMIIRNAVILIQEIDQNVALGQSPKDAIIAASIHRARPIVLTACAAI
LGMIPIAAEIFWGPMAFAIIGGLAVATMLTLTLLPCAMSLLLNAEHKARSKTDSDGKA
EVQP"
misc_feature 208592..211594
/locus_tag="Avi_5212"
/note="Cation/multidrug efflux pump [Defense mechanisms];
Region: AcrB; COG0841"
/db_xref="CDD:31183"
gene 211816..212613
/locus_tag="Avi_5213"
/db_xref="GeneID:7381343"
CDS 211816..212613
/locus_tag="Avi_5213"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547092.1"
/db_xref="GI:222106301"
/db_xref="GeneID:7381343"
/translation="MAGLLLVLALAGCSSVPLTQSGTLSSYKGLGPVEGRFSKSRSFA
DTPAIVAAQTVSIAPTRLSPLASSRLHDAGNDRLVSNALDRAMCIDLSDKYRIVGPGE
AADLIVHAVITDIVPTSKAVAGLSTAVTLGTSFVLPVGVPRLPIGLGGLAVEAEAVDA
KGEQRAAIVWSRGANSITNTARVSEVGDAYGLASSFASQFSEILVKGRKSSGLDLSLP
SGQKMKSQLGGKPKNAACEVFGRAPGLGGVLSGVVGAPPSWTDHPTK"
misc_feature 211852..212421
/locus_tag="Avi_5213"
/note="Protein of unknown function (DUF3313); Region:
DUF3313; pfam11769"
/db_xref="CDD:152205"
gene complement(212692..213627)
/locus_tag="Avi_5215"
/db_xref="GeneID:7381344"
CDS complement(212692..213627)
/locus_tag="Avi_5215"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_002547093.1"
/db_xref="GI:222106302"
/db_xref="GeneID:7381344"
/translation="MAVWNANEMPERDRFPYWREVLCEAYIALNPILEGEQRFKGEVK
ANLLDCINVTTISSSRQKIHRRRLDISRMPHEVYFLNLQVKGQCRMMQGSREALLEPG
DFSLVDSTEPYLNDYCSDDWTQYSFRIPRAMLKPLLKQADKQTAIRFTSAHPIASVAI
DYLKSVAQNAEHIGTASTPIANHIVDLVAMAAGVSTTEEDRARGTLRSQLSRSVIQFI
GAHAADPTLTPAKAAQHFKISVRYVHRLLEESGETFSRLLLKRRLERCADDLRAEAAI
SISEIAFRWGFNDLSHFSKTFRHHFGVAPRDYRGQ"
misc_feature complement(212701..212949)
/locus_tag="Avi_5215"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(212701..>212781)
/locus_tag="Avi_5215"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 213879..215264
/locus_tag="Avi_5216"
/db_xref="GeneID:7381345"
CDS 213879..215264
/locus_tag="Avi_5216"
/codon_start=1
/transl_table=11
/product="nitrilotriacetate monooxygenase"
/protein_id="YP_002547094.1"
/db_xref="GI:222106303"
/db_xref="GeneID:7381345"
/translation="MRKRLIFNCFTMNVPSHIYHGTWRHPNNQLAHFNEFETWSKLAT
KLEEGRFDAMFFADILGIDPAYDGKWDAYFEQGLHMPCNDTFTLCAALAGVTKNLGLV
FTSSILSEHPFAFAKKASTLDHISGGRIGWNIVTSVTDNAARNFGYDKIVPHDQRYDW
ADEYMSVLYKLWEGSWEDGAMIADRESGVFSDHTKVHRINHVGERYKVQGPHLVSPSP
QRTPMLYQAGASKRGSQFAAQHAEGTFVLYPNVDGARIGIAGTKAVAAQVGRGAEDLK
FIQGLSFVVGSTMEEAERKAAEIDEWVSYEGLAAHVSRDMGVDLSNLDPDKPVDESGL
DGLQGYARMIEMGKPNGEKATVKEVANALSYNCRIVGTPDSIADELALWQDAGVDGIN
MICQLHPDTYIDFIDHVTPVLQDRGLAQRDYAEGPLRQKLFGHGPRLPDNHPGAAHRG
AFSQSTQVAAE"
misc_feature 213897..215171
/locus_tag="Avi_5216"
/note="FMN-dependent oxidoreductase, nitrilotriacetate
monooxygenase family; Region: FMN_nitrolo; TIGR03860"
/db_xref="CDD:200332"
misc_feature 213921..215132
/locus_tag="Avi_5216"
/note="nitrilotriacetate monoxygenase oxidizes
nitrilotriacetate utilizing reduced flavin mononucleotide
(FMNH2) and oxygen. The FMNH2 is provided by an
NADH:flavin mononucleotide (FMN) oxidorductase that uses
NADH to reduce FMN to FMNH2; Region:
Nitrilotriacetate_monoxgenase; cd01095"
/db_xref="CDD:73245"
misc_feature order(213924..213926,214095..214097,214281..214283,
214347..214349,214569..214574)
/locus_tag="Avi_5216"
/note="active site"
/db_xref="CDD:73245"
misc_feature 214188..214193
/locus_tag="Avi_5216"
/note="non-prolyl cis peptide bond; other site"
/db_xref="CDD:73245"
gene 215384..215833
/locus_tag="Avi_5217"
/db_xref="GeneID:7381346"
CDS 215384..215833
/locus_tag="Avi_5217"
/codon_start=1
/transl_table=11
/product="flavoprotein oxidoreductase"
/protein_id="YP_002547095.1"
/db_xref="GI:222106304"
/db_xref="GeneID:7381346"
/translation="MMAAAVKVVTTSGPAGRAGLTVTAACSVCQDPPRLLVCVNGTAS
AHPFLLQNARLTLNILATDQQEIAMAFAGKVTQEKRFDIGEWTEDECGQPSLRGACAH
FTCSVHETMQSGTHTIFICNVHVASGDKDKLPLIYFDRNMMPLAKVA"
misc_feature 215390..215806
/locus_tag="Avi_5217"
/note="Flavin reductase like domain; Region:
Flavin_Reduct; smart00903"
/db_xref="CDD:197971"
gene complement(216095..217585)
/locus_tag="Avi_5218"
/db_xref="GeneID:7381347"
CDS complement(216095..217585)
/locus_tag="Avi_5218"
/codon_start=1
/transl_table=11
/product="Permeases of the major facilitator superfamily"
/protein_id="YP_002547096.1"
/db_xref="GI:222106305"
/db_xref="GeneID:7381347"
/translation="MSQTDLSMAKGIPTTPYSSGTMPARDGAPPKVSWKQYIADFVKA
PSRAKAALAGSLLLVAMGPAGLSALTPFVVPAFAMKTGTPLPEAMLMFVALPLIIGPL
VLPFAGQWVDRLGARRVALPGIILYALVTAIIPLAAGKLWLMGILLVLASIFGFGSSL
GIAFKVISEWFPKHRGVGFGLIGVASSLFSAIFSPLFQWLVNGNAPVSLPMMPGMSTE
APSKSAAVVAAIDPGIYAGLGWNGAYYVIAIAIAVIGIPAAFWLISEPKVSTTAEVPK
TVDVNLPGVPFKEAIPTRAWISITLFIAFAAAGPIAMRQNAVDFYGQTGIDPATVSLA
LSLCFSTSVIGLLAAGAVLDRANHPWVVAVLLATVPIGLALALVNSGNPALLYLSMAL
LGFATGAESTLGPTLIARYFGLKSFAALQGLSLAITSPALALAPFLVSVVKTSSGSYV
GPLLMLTAIALVAVILAAMLPRYPKPWVLHQPSGDALPDRATTTTS"
misc_feature complement(216278..217420)
/locus_tag="Avi_5218"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:191813"
misc_feature complement(<216983..217420)
/locus_tag="Avi_5218"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(217016..217018,217034..217039,
217046..217051,217082..217084,217091..217096,
217103..217108,217115..217120,217262..217267,
217271..217276,217286..217288,217295..217300,
217310..217312,217361..217366,217370..217378,
217385..217387))
/locus_tag="Avi_5218"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(216245..>216715)
/locus_tag="Avi_5218"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene complement(217671..218972)
/locus_tag="Avi_5219"
/db_xref="GeneID:7381348"
CDS complement(217671..218972)
/locus_tag="Avi_5219"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002547097.1"
/db_xref="GI:222106306"
/db_xref="GeneID:7381348"
/translation="MLPLLRKHAAESEQLGALAPATLAAVDRSGAFKITIPVELGGYA
LGARDAAEIVKALGQGDASAGWLVIVSSAARNALGFDPKARDEVFAGIQDWVGPIMFG
ATVFAPKVGDGRKVDGGYMVKGKWSFGSGCKHAAWGAVGFEYDDPASGARLRAMGILS
RDQYEIVDDWHVMGLQATNSNSVRADQEIFVPDYRVVHTNDLPRIMDSLKGKYSGLAF
KHSPIGGMVAMTCTFAALAVGIAQGALDSFLEQAKKRPPFNLPYKTMSEMASIQMVAG
KARAVINGANAVLWRHADEIDRRAIAGEDFFPWNEPEITMDLVHQIHECLRVVDGLLL
ALGSSAVVLSNPLQRALRDIHVLATHGAFRIDPMAEINGRDMFGLEPFPMIAALSSPP
PGSPPAGKGPSHMPPPGMTPPAGMAPPPGMAPPPGMTPVRG"
misc_feature complement(217839..218972)
/locus_tag="Avi_5219"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
misc_feature complement(217824..218969)
/locus_tag="Avi_5219"
/note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region:
CaiA; COG1960"
/db_xref="CDD:32143"
misc_feature complement(order(217863..217865,217869..217871,
217875..217886,218583..218585,218589..218591,
218649..218651,218655..218657,218760..218762))
/locus_tag="Avi_5219"
/note="active site"
/db_xref="CDD:173838"
gene complement(219306..219827)
/locus_tag="Avi_5221"
/db_xref="GeneID:7381349"
CDS complement(219306..219827)
/locus_tag="Avi_5221"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547098.1"
/db_xref="GI:222106307"
/db_xref="GeneID:7381349"
/translation="MSGFTIVNGIAEISDPAIYTNWLDNEEFKAAVAADPSPERTAIK
RLLIEFEADLSRIVRDNVVKERVVEVMTKYIAEDYIQHDPNAFGHGREKLIEQFRLVP
IAGSTPPPVVSVILDGEVGCLMMRELAPDPVVPGAVYEWNILTVFRVHNGKIAEHWST
FRKVAPGQNPMGN"
misc_feature complement(219321..219626)
/locus_tag="Avi_5221"
/note="Nuclear transport factor 2 (NTF2-like) superfamily.
This family includes members of the NTF2 family,
Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases,
and the beta subunit of Ring hydroxylating dioxygenases.
This family is a classic example of...; Region: NTF2_like;
cl09109"
/db_xref="CDD:211454"
gene complement(220317..220856)
/locus_tag="Avi_5222"
/db_xref="GeneID:7381350"
CDS complement(220317..220856)
/locus_tag="Avi_5222"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_002547099.1"
/db_xref="GI:222106308"
/db_xref="GeneID:7381350"
/translation="MQLIGQKGSAAVTMRGIATASDMSLATVYHYFPNRTAVIATLFE
RYSKGTREVIDTALQDIKDASGIGDAAEMIVDFYYNRLRGDPAVQDLLDAIHADKALH
DLDIEETHRQADQFSRSTQVFLAESCRQEYARAVYLLFQLASAAIRLALHESEEKGAV
IIDDYRRLIRGRFSQFEQL"
misc_feature complement(220326..220856)
/locus_tag="Avi_5222"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature complement(220731..220856)
/locus_tag="Avi_5222"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 221145..222434
/locus_tag="Avi_5223"
/db_xref="GeneID:7381351"
CDS 221145..222434
/locus_tag="Avi_5223"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002547100.1"
/db_xref="GI:222106309"
/db_xref="GeneID:7381351"
/translation="MIPGDNLSWSNWSGSVETKLKAILRPRTKEELQDVIRSAPGPLR
LVGSGHSFTPLVSTPGTIVDLSALSGLIDYDSDALTATIAAGTKLSDLTELLAGIGQA
LPNMGDIDKQSVAGALGTATHGSGLGLGAYHTLLKGMQFIDGRGTHREFTAGRDDEMI
HATGVTLGSFGALTAVTFQNVPAYNLRRKRTMLSIGNTLENFETLMSAHRSAEIFFVP
FANHALFQTLDITDETGDFQVTSEDEDGLATLKKLRTFLRWFPGLRRKLIGNAMAKLS
DEEAVGEWMKVYVTDRQTKFNEMEYHLPFEEGAGALAEIIELIEKRFPEIYFPIEVRS
VKGDEFWLSPFYKRDTCSIAIHHGIGENPAAFFLAAEAVFRKRGGRPHWGKLHNLRAA
DLVGIYPRFKDAMEIRSEIDPENRFISPYMATLLGVR"
misc_feature 221169..222425
/locus_tag="Avi_5223"
/note="FAD-linked oxidoreductase; Region: bact_FAD_ox;
TIGR01679"
/db_xref="CDD:130740"
misc_feature 221205..221600
/locus_tag="Avi_5223"
/note="FAD binding domain; Region: FAD_binding_4;
pfam01565"
/db_xref="CDD:201863"
misc_feature 221670..222419
/locus_tag="Avi_5223"
/note="D-arabinono-1,4-lactone oxidase; Region: ALO;
cl04370"
/db_xref="CDD:174818"
gene 222434..223600
/locus_tag="Avi_5224"
/db_xref="GeneID:7381352"
CDS 222434..223600
/locus_tag="Avi_5224"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547101.1"
/db_xref="GI:222106310"
/db_xref="GeneID:7381352"
/translation="MVDADYFRMLSEALSQAELFRPVLVVDRDRLDANIATIAGGLAP
GLGLRVVDKSLSSIPLLERILTQAGTMSLMSFHLPMTCAVLEAFPKAEILYGKPLPTR
ALAAWMRLASPHLVEDLLRRTVFLIDSPDRLDQYAALAREAGQTIRIAFETDTGMHRG
GFETPDALAAICARAIQQKELRIEGLVGYEAHIPEVARLIGGAAEREKVISRVKAFVS
VFPHGTCAIANTGGSKTALSYHDAGAANEVSVGSAFLKPTDFDMPSLEAVQPAVFIAT
PVLKVEEVRLPGPPLLTSLMQAIGLFPRKGCFLYGGKWMAKPVFPKGMRENKIWGLSS
NQQMMALPYESTLKPDDFAFFRPTQSEAVLQHFDGIHVLSKGRIIETWPTLPPG"
misc_feature 222455..223591
/locus_tag="Avi_5224"
/note="Predicted amino acid aldolase or racemase [Amino
acid transport and metabolism]; Region: COG3616"
/db_xref="CDD:33415"
misc_feature 222470..223591
/locus_tag="Avi_5224"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzymes; Region: PLPDE_III; cl00261"
/db_xref="CDD:206940"
misc_feature order(222584..222586,222590..222592,222719..222721,
222887..222889,222992..222994,222998..223000,
223178..223189)
/locus_tag="Avi_5224"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143484"
misc_feature 222590..222592
/locus_tag="Avi_5224"
/note="catalytic residue [active]"
/db_xref="CDD:143484"
gene complement(223660..224841)
/gene="fadL"
/locus_tag="Avi_5225"
/db_xref="GeneID:7381353"
CDS complement(223660..224841)
/gene="fadL"
/locus_tag="Avi_5225"
/codon_start=1
/transl_table=11
/product="long-chain fatty acid transport protein"
/protein_id="YP_002547102.1"
/db_xref="GI:222106311"
/db_xref="GeneID:7381353"
/translation="MSSQYSWRAPQFALAIWVGALSFAPCVAIAGGFSRGEADTDILF
TDGNYSLRTGAIYVSPSRSFSTLNGARASDKAYSDEFWIPSVAVKATLGSGIACALTY
TQPFGASATYGSQAQNAEYTTAVSQGLPLVNPTSKMQFSTDEYGATCDVRVDAGPGRF
YVIGGVFLESFEYKENTLYGNIRLKDDGALGYRVGAAYDIPEYAMRFQLMYRSQVSHD
AEGTFTPSALAAAAGVTDTAPANGTGTLPQSIKLSAQTGVAPGWLVYGSLTWTDWSVL
QNFRYDVTGLGTSNKAFNYKDGYTVQIGVGHEFTEKLSGTVNVTWDEGVGTGADITTD
TWSLGLGAEYKTKFGKFDLGTSVSYLTAGSQSVSAGATYDATAKHDWAVAVGLGYLIE
F"
misc_feature complement(223675..224685)
/gene="fadL"
/locus_tag="Avi_5225"
/note="Porin superfamily. These outer membrane channels
share a beta-barrel structure that differ in strand and
shear number. Classical (gram-negative ) porins are
non-specific channels for small hydrophillic molecules and
form 16 beta-stranded barrels (16,20)...; Region:
OM_channels; cl01155"
/db_xref="CDD:213103"
gene complement(225377..226816)
/locus_tag="Avi_5226"
/db_xref="GeneID:7381354"
CDS complement(225377..226816)
/locus_tag="Avi_5226"
/codon_start=1
/transl_table=11
/product="aldehyde dehydrogenase"
/protein_id="YP_002547103.1"
/db_xref="GI:222106312"
/db_xref="GeneID:7381354"
/translation="MFDMAIETLQSILERQRQSFQHDSYPSLSLRRDRLNRIGRLLKE
NRQALCDVVSRDFGHRSDHETVQLEIAPLMSALRHTRSHLRRWMKRERRGRSIEFLQL
ANWVQYQPLGVIGIMVPWNYPLLLALGPLIDILAAGNRAIIKPSELLPETSALLSKLV
EAYFSPEEVAVIEGGVEIAAAFSALPFDHLIFTGSTAVGRKVMASAAANLTPLTLELG
GKSPALIAPDYPIADAARDIAFGKLMNAGQTCIAPDYVLVEKSKLGDLASALISQAEA
FYPRQAGPQHAGPQHAGQEQYSSLVGARAHERLLKGIEECRARGAKLITADIAMPSQG
HVIAPTLVIDPPADCLLMEEEIFGPILPLIPYEDFDTALKFVRERPRPLALYIFTGNR
ATEKKALSNTISGNVTINGTLLHIAQNDLPFGGIGPSGMGAYHGHEGFKRFSHARGIA
KVRLFNPARLAMPPYGWLAQVLARFMMRD"
misc_feature complement(225422..226804)
/locus_tag="Avi_5226"
/note="aldehyde dehydrogenase family protein; Provisional;
Region: PTZ00381"
/db_xref="CDD:185586"
misc_feature complement(225470..226789)
/locus_tag="Avi_5226"
/note="Coniferyl aldehyde dehydrogenase-like; Region:
ALDH_CALDH_CalB; cd07133"
/db_xref="CDD:143451"
misc_feature complement(order(225746..225748,225752..225754,
225893..225895,225902..225907,225911..225913,
226235..226237,226289..226291,226376..226378,
226454..226462))
/locus_tag="Avi_5226"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143451"
misc_feature complement(order(226067..226069,226076..226078,
226169..226171,226454..226456))
/locus_tag="Avi_5226"
/note="catalytic residues [active]"
/db_xref="CDD:143451"
gene complement(226820..227971)
/locus_tag="Avi_5227"
/db_xref="GeneID:7381355"
CDS complement(226820..227971)
/locus_tag="Avi_5227"
/codon_start=1
/transl_table=11
/product="MFS permease"
/protein_id="YP_002547104.1"
/db_xref="GI:222106313"
/db_xref="GeneID:7381355"
/translation="MTMLLWILGLSAAYAVALNGTMVMPVVVLSMSKLTGYNEAMATI
VASAELAGIAFYGIFLPKLALRSWKAVAIGGIVAVMAGEALSFWLQNPYSLATARFAT
GLGEGALFSLVSMSLASLANAERYWGALSLIGGTAMGLLLFVVSLVPPEEAGAPVFLM
LGAFTAIMAPLLVFVARRSSRLPVASRHTKLNNGKMLLAMMVVFLVYGVQAAQWAVCG
YVGEKVGLSNGEVGFYLALSSLVGFLGAIIPSFTHDKAKRLPAVLLGFLIMAMSIYFL
FTMLTPLIFVTTQVLVNIGFYIVTPFITGILTENDPDGSVMSRTLVVAVVGGTLGTAI
AGPIFEGYDSSLFAWSCLLPLAIAAVCAAIIFGHLHRSFPATVINKIAE"
gene 228408..229439
/locus_tag="Avi_5228"
/db_xref="GeneID:7381356"
CDS 228408..229439
/locus_tag="Avi_5228"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_002547105.1"
/db_xref="GI:222106314"
/db_xref="GeneID:7381356"
/translation="MKTVDARYVTANIPAFLIRSLVMTLTDFGLDASRLTAGLGIPME
DLADPACRVSFRQGREAILRAMKMTRGKALGLETGIREKITSVGLVGYVMVTAATVGD
AVKLGLDLQKDTGSMLEFDTRESPEGVVVTAASRFHDPDIYVFLVEEAFASFMGVAHG
LVGEGFKPVRVDFAYPAPAHTEAYQRVFGCPVRFGQMENAFIYDAAWYKQPLLTSDPL
SHRQLLEFMAYNRARSREAAEIIESVERVLRQKLHSRMHISKVARALGMSERTLRRRL
AESGVSFQSLLDDLRKNRTLELLGNRNMSVEQIAFAVGFSDPHNFRRAFRRWTGTTPG
ALRADLSPI"
misc_feature 228492..229043
/locus_tag="Avi_5228"
/note="Arabinose-binding domain of AraC transcription
regulator, N-term; Region: Arabinose_bd; pfam12625"
/db_xref="CDD:204986"
misc_feature 229125..229241
/locus_tag="Avi_5228"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
misc_feature 229176..229418
/locus_tag="Avi_5228"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature 229311..229418
/locus_tag="Avi_5228"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 229570..231168
/locus_tag="Avi_5229"
/db_xref="GeneID:7381357"
CDS 229570..231168
/locus_tag="Avi_5229"
/codon_start=1
/transl_table=11
/product="xylulose kinase"
/protein_id="YP_002547106.1"
/db_xref="GI:222106315"
/db_xref="GeneID:7381357"
/translation="MANSDQYVLSIDLGTSGCKVGLVSITGHVVAWAFRSVPLQVIDT
IGAEQDPSQWWNAFIEASQDVLSQSAALRENIVAICSSTQGEGTVAVDRDGNVLMNAI
IWLDMRGARYLKKEMRGAMKVAGYDAIKLQKWLRLCGGAPALSGKDPAGHMLLIRDAF
PDIYEKTYKFLNVLDFFNLRLTGRFCATQDSILTSWVTDNRDVNHIRYDDGLIGASGI
DKAKFPDLVRCTDIVGTLLPSVADLLGLSPKTPVVAGAIDNSAAAIGAGTLADYDTHL
YMGSSSWISAHVPFKKTSVMDQITSVPCPVPSKYLMIAMQSSGASNIAFLKDRIVFHD
DGLIDSEPTPDTYRLLDEIAARTPAGAAGMMYLPWLFGERCPVDDPTLRAGIFNMSME
HNRETLVRAVFEGVALNTRWMMKPVSRFLGRRPEAITMIGGGAMSPAWCQIFADVLGV
QIRQPHDPMKANARGAAFIGAVGLGLIQFDEVARHVVIDRVYDPDPATQRLYDERFGI
FTELHRRLAPLYKRLNGSKGKIHG"
misc_feature 229579..231141
/locus_tag="Avi_5229"
/note="Sugar (pentulose and hexulose) kinases
[Carbohydrate transport and metabolism]; Region: XylB;
COG1070"
/db_xref="CDD:31268"
misc_feature 229588..231138
/locus_tag="Avi_5229"
/note="uncharacterized xylulose kinase-like proteins; a
subgroup of the FGGY family of carbohydrate kinases;
Region: FGGY_XK_like_2; cd07805"
/db_xref="CDD:198373"
misc_feature order(229588..229593,229597..229605,229624..229632,
229636..229641,229648..229650,229654..229656,
229663..229665,229798..229800,229807..229815,
229825..229827,229975..229980,229987..229995,
230002..230004,230134..230139,230146..230151,
230254..230259,230326..230328,230335..230337,
230344..230370,230386..230388,230392..230394,
230398..230403,230416..230418,230437..230454,
230461..230481,230689..230691,230854..230856,
230932..230934,230950..230970,230974..230982,
230989..230991,230995..230997)
/locus_tag="Avi_5229"
/note="N- and C-terminal domain interface [polypeptide
binding]; other site"
/db_xref="CDD:198373"
misc_feature order(229603..229605,229609..229620,229624..229626,
229819..229827,229879..229881,230149..230151,
230341..230346,230404..230409,230467..230469,
230506..230508,230512..230514,230527..230532,
230539..230541,230611..230613,230863..230871,
230878..230880)
/locus_tag="Avi_5229"
/note="active site"
/db_xref="CDD:198373"
misc_feature order(229603..229605,229609..229620,229624..229626,
230341..230343,230401..230409,230527..230532,
230536..230541,230611..230616,230620..230622,
230863..230871,230878..230880)
/locus_tag="Avi_5229"
/note="MgATP binding site [chemical binding]; other site"
/db_xref="CDD:198373"
misc_feature order(229603..229605,229612..229614,230341..230343)
/locus_tag="Avi_5229"
/note="catalytic site [active]"
/db_xref="CDD:198373"
misc_feature order(229603..229605,230341..230343)
/locus_tag="Avi_5229"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:198373"
misc_feature order(229822..229827,230149..230151,230344..230346,
230416..230418,230467..230469,230506..230508,
230512..230514)
/locus_tag="Avi_5229"
/note="xylulose binding site [chemical binding]; other
site"
/db_xref="CDD:198373"
misc_feature order(230542..230544,230551..230556,230713..230736,
230746..230754,230761..230763)
/locus_tag="Avi_5229"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:198373"
gene 231161..231814
/locus_tag="Avi_5230"
/db_xref="GeneID:7381358"
CDS 231161..231814
/locus_tag="Avi_5230"
/codon_start=1
/transl_table=11
/product="L-fuculose-phosphate aldolase"
/protein_id="YP_002547107.1"
/db_xref="GI:222106316"
/db_xref="GeneID:7381358"
/translation="MAKFMAQRQEIADMCRYFADNGYFAGTGGNIGVRVDKQLMAVTP
SASDYYTVEAKDVVILDIETLDIVEGDKTPTIEKGLHARMLLMHPTRHASVHTHQPIA
SAVALLHEILPWPRGSDLGALGPHVALIPYRPSGTGMLAKIFAKSLRPDIFAYLLASH
GVICAGADLKTAAGMIRKIEAAAAAHLRERINKHVNLDRQLQAFILNVLDKAETKGA"
misc_feature 231185..231721
/locus_tag="Avi_5230"
/note="Class II Aldolase and Adducin N-terminal domain;
Region: Aldolase_II; pfam00596"
/db_xref="CDD:201333"
misc_feature order(231197..231199,231209..231211,231233..231235,
231302..231304,231308..231313,231452..231454,
231458..231463,231476..231484,231506..231508,
231512..231517,231554..231556,231635..231637,
231668..231670,231689..231691,231701..231703)
/locus_tag="Avi_5230"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29521"
misc_feature order(231248..231250,231293..231298,231383..231391,
231446..231448,231452..231454,231638..231640)
/locus_tag="Avi_5230"
/note="active site"
/db_xref="CDD:29521"
misc_feature order(231446..231448,231452..231454,231638..231640)
/locus_tag="Avi_5230"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:29521"
gene 231816..233276
/gene="atrB"
/locus_tag="Avi_5231"
/db_xref="GeneID:7381359"
CDS 231816..233276
/gene="atrB"
/locus_tag="Avi_5231"
/codon_start=1
/transl_table=11
/product="glutamate-1-semialdehyde aminotransferase"
/protein_id="YP_002547108.1"
/db_xref="GI:222106317"
/db_xref="GeneID:7381359"
/translation="MNMAARNSELSYSISAWPDNKDLMDRLNALLKQPPKGISKTNMP
KVLDYFEQKCQTSKAWAARAAEVIPGGVQHNLAFNYPFPIAATKVDGAYMWDADGNRY
TDFLQAGGPTLLGSNYLPVREKVHHLIDECGPVTGLLHEYEFKLAEIIRKFMPGIEMF
RMLGSGTEACMGAIRLARAHTGKKWVIKVGGDYHGWSDQMVYGMRVPGTGRREATGIP
KGVTGYTQEVFPNEIGTLRRKLMLNRIRGGTAAVILEPLGPESGTRPVTPEYNREVRK
LCDEFGALLIFDEVVTGFRVGMGGAQGYFNVTPDITVFGKCLTGGYLMAGGIGGRKDI
MMTLVGGIGTSSKRAFVGGTLSANPLSCVAGYYAIEEMARTNAPVVAGRAGDRLAKGL
KEILNRLGLPYVVYNMGSIVHLQTSAVLLMSMRNPIKLMREANPRKHLMEEMGAAYMA
HGILTLAGSRIYTSMADTDEVIDDALERFETVFRLV"
misc_feature 231978..233267
/gene="atrB"
/locus_tag="Avi_5231"
/note="glutamate-1-semialdehyde aminotransferase;
Provisional; Region: PRK00062"
/db_xref="CDD:178834"
misc_feature 231993..233264
/gene="atrB"
/locus_tag="Avi_5231"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature order(232311..232316,232323..232325,232578..232580,
232677..232679,232686..232688,232758..232763)
/gene="atrB"
/locus_tag="Avi_5231"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 232761..232763
/gene="atrB"
/locus_tag="Avi_5231"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 233284..233967
/locus_tag="Avi_5232"
/db_xref="GeneID:7381360"
CDS 233284..233967
/locus_tag="Avi_5232"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547109.1"
/db_xref="GI:222106318"
/db_xref="GeneID:7381360"
/translation="MKVNNAYIEEVLGRAAARLAGKGLLKPGDVLSQRIPEQNAFVSV
RINSGQDVPDEFEWTSLSATPGLTATPGLSAIPGDLHHRIYRARPDVGAIASGGLTWT
SALARLDLSLPAVFDEQIRHLGLEAKRLGMCSTDDPTKALSNGANAYCLDDMALCFGM
GLERLLLNIEILEKCAECFILAQSATVKVKQIPWLIRFIANGRLKKDQKEAAARHLRG
ERSIMKAGY"
misc_feature <233521..>233655
/locus_tag="Avi_5232"
/note="Class II Aldolase and Adducin head (N-terminal)
domain. Aldolases are ubiquitous enzymes catalyzing
central steps of carbohydrate metabolism. Based on
enzymatic mechanisms, this superfamily has been divided
into two distinct classes (Class I and II); Region:
Aldolase_II; cl00214"
/db_xref="CDD:206906"
gene 234179..235228
/locus_tag="Avi_5234"
/db_xref="GeneID:7381361"
CDS 234179..235228
/locus_tag="Avi_5234"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547110.1"
/db_xref="GI:222106319"
/db_xref="GeneID:7381361"
/translation="MQETMLVTGGSGFVASHLILQLLEMDATVHTTVRSLRNVAKIKP
LTDMQARFPGKLTLYEADLLTPGSFDAAMAGCAIVFHVASPFKLPEKIKDGQREMVEP
ALQGTRNVLGSVNRTESVRRVVMTSTIGAIFGDYIDIRSMKNNTVAEDYFNTSSNVQN
NPYHYSKVLAEKEAWKIQGEQSRWSLTTINPGMILGPSLTPASESGSLFLLDEMFKGY
FFYGMPDLSLACVDVRDVAQAHIRAALNPDAKGRYILAENRTRTFLEIAGYARRVHPK
PYLLPSWQIPNLVVRLIGPLFGLTQAYMTNHLGIRFALDNRRSQSELGIAYRPFEQTM
ADHYRGWAQQRRATA"
misc_feature 234194..235219
/locus_tag="Avi_5234"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:30800"
misc_feature 234194..235150
/locus_tag="Avi_5234"
/note="aldehyde reductase, extended (e) SDRs; Region:
AR_SDR_e; cd05227"
/db_xref="CDD:187538"
misc_feature order(234203..234205,234209..234220,234278..234280,
234368..234370,234422..234436,234554..234562,
234665..234667,234677..234679,234749..234760,
234794..234799)
/locus_tag="Avi_5234"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187538"
misc_feature order(234434..234436,234446..234448,234560..234568,
234575..234577,234665..234667,234749..234757,
234806..234808,234842..234844,234863..234865,
235118..235120)
/locus_tag="Avi_5234"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:187538"
misc_feature order(234560..234562,234665..234667,234677..234679)
/locus_tag="Avi_5234"
/note="active site"
/db_xref="CDD:187538"
gene 235257..236084
/locus_tag="Avi_5235"
/db_xref="GeneID:7381362"
CDS 235257..236084
/locus_tag="Avi_5235"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002547111.1"
/db_xref="GI:222106320"
/db_xref="GeneID:7381362"
/translation="MQSSGRRSIMHFSGKIILIVGASSGMGRVLAQRLAGEGAKVIVT
ARREPMLIEVSEDISSAGGDCLAIAADATDAAAAAEVVKTVIDHYGRIDMIYLNAGGA
PALDMRLMSASDVNACMRLNYDVVVNYLFPVLKQMMRQGGGYVAHTNSLAGFLGVPLQ
GPYSAAKGAAMLLIDTCRVEFARYGIKFTTVYPGFVATEATAGDGMPAPLEISADKAV
DHILYALRNEKADYLFPFTMRWLIRLAHILPKPLTLWILGKSMPVLPEIGHTQTIST"
misc_feature 235296..236036
/locus_tag="Avi_5235"
/note="short chain dehydrogenase; Provisional; Region:
PRK06181"
/db_xref="CDD:180447"
misc_feature 235305..236024
/locus_tag="Avi_5235"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature order(235317..235319,235323..235328,235332..235334,
235389..235397,235548..235556,235698..235706,
235743..235745,235755..235757,235833..235844)
/locus_tag="Avi_5235"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(235620..235622,235704..235706,235743..235745,
235755..235757)
/locus_tag="Avi_5235"
/note="active site"
/db_xref="CDD:187535"
gene 236171..236833
/locus_tag="Avi_5237"
/db_xref="GeneID:7381363"
CDS 236171..236833
/locus_tag="Avi_5237"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547112.1"
/db_xref="GI:222106321"
/db_xref="GeneID:7381363"
/translation="MQDIESAVFDLDETLLNWDSTAAWILERVGQSGWRFVLAALALP
FAGPLIVFPPLRRWGTSVFLWIATFGLSEHALKVSFVRFADRVNAGKQPRLAWHEKGL
AELRHYLNQGSRVAVATGAPLWIAAPFAACIDSRIQVVGSGLHRVLGGWVLSDHCRHE
RKCTALGGIGFQGRWTAAYTDSLDDLPILMRATRAFAINSSSRKRKKFDANGLNIQYL
NW"
misc_feature 236189..236815
/locus_tag="Avi_5237"
/note="Phosphoserine phosphatase [Amino acid transport and
metabolism]; Region: SerB; COG0560"
/db_xref="CDD:30906"
misc_feature 236189..236737
/locus_tag="Avi_5237"
/note="haloacid dehalogenase-like hydrolase; Region: HAD;
pfam12710"
/db_xref="CDD:205034"
gene complement(236944..238167)
/locus_tag="Avi_5238"
/db_xref="GeneID:7381364"
CDS complement(236944..238167)
/locus_tag="Avi_5238"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547113.1"
/db_xref="GI:222106322"
/db_xref="GeneID:7381364"
/translation="MLCENLSPTRRAVLGTSGALFAWAFMPRFAHAAGGRDPRFVTII
LRGALDGLTAVPPIGDPDYEGLRQSIALRLDGDKPVLPLDGFFGLHPSMPNFQRLFRA
NQAAVVHASATAYRERSHFDGQDVLESGFPTPGHVETGWMNRMLEGLPAGDKIAPGAA
ERVQGLSVGATAPLVIRGKAPVLGWAPSVLRPADGDLAPRLMDLYGRTDPMLSKLLIE
GIQTGKIASGLDMKSKGGPGDPNGMEQMARGAARLLAQPDGPRVAALAFEGWDTHAQE
IDRLAKLLAGLDKSIAAFEQELGPAWKDTAIIVATEFGRTARINGTDGTDHGTGTTAF
LAGGAVRGGRIITDWPGLKQNQLFEGRDLAATTDIRAVIKGMAVDLLGASAGHLASVV
FPGSDSVQPMKGLIV"
misc_feature complement(236947..238164)
/locus_tag="Avi_5238"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4102"
/db_xref="CDD:33859"
misc_feature complement(237043..238059)
/locus_tag="Avi_5238"
/note="Protein of unknown function (DUF1501); Region:
DUF1501; pfam07394"
/db_xref="CDD:116016"
gene complement(238171..239745)
/locus_tag="Avi_5240"
/db_xref="GeneID:7381365"
CDS complement(238171..239745)
/locus_tag="Avi_5240"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547114.1"
/db_xref="GI:222106323"
/db_xref="GeneID:7381365"
/translation="MSNSNDVDAALALWRFGLGAADGGITAIKDAPRDLLKEEITERA
VPTPVGAQLRSSSDLLVALYEYQKQVKAERDKQPAAGAMAGAAMAGANAMQGAGGPPQ
AAGMQGNAMQGNGMQVGAMPPQSQPQPQAQAQAQAQPQSMDKKPDMPVSKRPYFPQQI
LLAEADARFNGTIHQPLIGFGERLAMFWANHFSVAISKGGEVHILAGAFEREAIRPHV
FGRFEDMLLAVETHPAMLVFLDNQQSIGPTSPANKNGKRGLNENLAREIMELHTLGVD
GGYSQADVTSLARIITGWTFYRDEKRPGPQGKFIFNANAHEPGDHTVMGMTYAEGSVE
QGRTALRDLARHPATARHIATKLVRYFVADQPPPALVTKLAAAYTKSQGDLSAVYTAL
IDADEAWNPTLTKMRMPQDYVAAMLRSSGIRPKPEQIISMLNALGQPLWNPAGPNGFS
DVTDAWASSESLATRIDAANLFAHQIQGQIDPRSFAGDRLGPLLTADTLQAISRAETR
PQGLSIAFLSPEFQRR"
misc_feature complement(238174..239319)
/locus_tag="Avi_5240"
/note="Protein of unknown function (DUF1800); Region:
DUF1800; pfam08811"
/db_xref="CDD:192162"
misc_feature complement(238174..>239313)
/locus_tag="Avi_5240"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5267"
/db_xref="CDD:34864"
gene complement(239822..240271)
/locus_tag="Avi_5241"
/db_xref="GeneID:7381366"
CDS complement(239822..240271)
/locus_tag="Avi_5241"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547115.1"
/db_xref="GI:222106324"
/db_xref="GeneID:7381366"
/translation="MTEHGFKRLAIGLLVLNTFLICALAGAGFFYLYDTATIPPSRLP
LAGEQLPSKLRGEFQKALNDARRDVRSTGLEARQARVEAAALMGKPELDGVALADALK
RAREAEYAVRAATEQKAIDFVASLSVDERRRLADGLIQREAPRPATK"
misc_feature complement(239825..240247)
/locus_tag="Avi_5241"
/note="Predicted integral membrane protein [Function
unknown]; Region: COG5612"
/db_xref="CDD:35171"
gene complement(240268..240705)
/locus_tag="Avi_5242"
/db_xref="GeneID:7381367"
CDS complement(240268..240705)
/locus_tag="Avi_5242"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547116.1"
/db_xref="GI:222106325"
/db_xref="GeneID:7381367"
/translation="MSDDSKQSMDAERFRALAEAYGGDRKRWPEDRRRAADIFAATEA
GRAMVEEASRLDAFLALSAPPSPSAALTGRILQSADKRVTLRRRLHRWLVGAGLLGVG
LAGGLTGALAVAIVAPPTQIPMTDTATAFGNIMTEGEIAQEIQ"
gene complement(240698..241276)
/gene="sigW"
/locus_tag="Avi_5243"
/db_xref="GeneID:7381368"
CDS complement(240698..241276)
/gene="sigW"
/locus_tag="Avi_5243"
/note="Member of the extracytoplasmic function sigma
factors which are active under specific conditions; binds
with the catalytic core of RNA polymerase to produce the
holoenzyme and directs bacterial core RNA polymerase to
specific promoter elements to initiate transcription"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor"
/protein_id="YP_002547117.1"
/db_xref="GI:222106326"
/db_xref="GeneID:7381368"
/translation="MTDDPDEELVRQVATGDQAAMRTMVARKLPRFLALANRMLADPA
EAEDVAQETFLRIWKHAGGWRQGRARFDTWAHRVAINLCYDRLRKRRDVLMAEPPDRM
DDAPLPDAGLTGGEADSQRVNAALQALAPRQREAIVLVYYQDMSNLEAASVMQISVDA
LESLLARGRRSLQKTLTAEGLTSDGMNGDGNE"
misc_feature complement(240719..241276)
/gene="sigW"
/locus_tag="Avi_5243"
/note="RNA polymerase sigma factor; Reviewed; Region:
PRK05602"
/db_xref="CDD:180159"
misc_feature complement(241004..241207)
/gene="sigW"
/locus_tag="Avi_5243"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(240758..240919)
/gene="sigW"
/locus_tag="Avi_5243"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(240770..240772,240776..240781,
240785..240793,240797..240802,240806..240808,
240836..240841,240857..240859,240887..240889))
/gene="sigW"
/locus_tag="Avi_5243"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene complement(241574..241969)
/gene="phnA"
/locus_tag="Avi_5247"
/db_xref="GeneID:7381369"
CDS complement(241574..241969)
/gene="phnA"
/locus_tag="Avi_5247"
/codon_start=1
/transl_table=11
/product="alkylphosphonate uptake protein"
/protein_id="YP_002547118.1"
/db_xref="GI:222106327"
/db_xref="GeneID:7381369"
/translation="MFELTDVLVATPGLAPVSDGDQITFTSGAGSVAGDNDDYIYDEA
TGEWRPASEVAAAAAQASEVRDASGNILQDGDSVTLIKDLKVKGAGQTLKQGTVIKSI
RLTDNPEEIDCRHDAIKGLVLRTEFVKKR"
misc_feature complement(241577..241876)
/gene="phnA"
/locus_tag="Avi_5247"
/note="Uncharacterized Zn-ribbon-containing protein
involved in phosphonate metabolism [Inorganic ion
transport and metabolism]; Region: PhnA; COG2824"
/db_xref="CDD:32652"
misc_feature complement(241622..241777)
/gene="phnA"
/locus_tag="Avi_5247"
/note="PhnA protein; Region: PhnA; pfam03831"
/db_xref="CDD:202780"
gene 242212..244641
/locus_tag="Avi_5248"
/db_xref="GeneID:7381370"
CDS 242212..244641
/locus_tag="Avi_5248"
/codon_start=1
/transl_table=11
/product="pyrroloquinoline-quinone-dependent quinate
dehydrogenase"
/protein_id="YP_002547119.1"
/db_xref="GI:222106328"
/db_xref="GeneID:7381370"
/translation="MVQQKGALSAVAKLWLILLGTVLVLAGLFLAIGGYRLITLGGSW
YFIITGIAVVLSGLLVLMRRPLGAVLFVIVTLLTAVWAIWDAGLDFWPLISRLLAFGI
GSTVVLLSLPLLRKARGLAPGYAGSLTLAAVLALASAGGVAGMFMPHPSVPFTGTPIA
RVPVDPASEQKNWEHYGNTSGGSRFAALDQINVDNVKALTVAWTYHTGDTPISPGNNG
AEDQETPLQVGEKLFLCTPHNNVIAVDIDSGKQLWKAEINAKSSVWMRCRGLAYFDAT
RPLDQPTVPGSTPVSAVTVAPGALCERRILMNTIQAQLIALDADTGAFCPDFGTNGRV
DLKIGMGDAPDPQYVLTSAPTLAGTTVVVGGRIADNVQVDMPGGVMRGFDAVTGELRW
AFDPGNPEITKLPPPGQTYTRSTPNVWAAMSYDPASNTVFMPVGSPSVDLYGTTRTPL
DHKYGASMLALDATTGREKWVYQTVHNDLWDFDVPMQPSFIDFPKADGTKVPALVFGT
KAGQLYVLDRQTGRALTEVKEIPVKPANIPNEPYSLTQPLSVGMPQIGTGPFTESDMW
GATPFDQLMCRIAFKSMRYEGLYTAPGTDTSLAFPGSLGGMNWGGLSTDPVHNLIFVN
DMRVGLWVKMQEAAPTTKTSNGGESVNTGMGLVPMKGTPYAVLKDRFLSAAGIPCQKP
PFGTLTAVDMKTQKIVWQVPVGTVMDQGPLGIKMGLPIPIGMPTLGGTLATQGGLVFI
AGTQDYYLRAYSAATGEEVWKARLPVGSQGGPMTFKSPKTGKQYVVISAGGARQSTDR
GDYVIAYALPN"
misc_feature 242317..244635
/locus_tag="Avi_5248"
/note="membrane-bound PQQ-dependent dehydrogenase,
glucose/quinate/shikimate family; Region: PQQ_membr_DH;
TIGR03074"
/db_xref="CDD:200239"
misc_feature 242728..244632
/locus_tag="Avi_5248"
/note="Membrane-bound PQQ-dependent glucose dehydrogenase;
Region: PQQ_mGDH; cd10280"
/db_xref="CDD:199838"
misc_feature order(242803..242811,242818..242820,242938..242940,
242944..242946,242953..242961,242968..242970,
243157..243159,243163..243165,243172..243180,
243187..243189,243355..243357,243361..243363,
243370..243378,243385..243387,243589..243591,
243595..243597,243604..243612,243619..243621,
243754..243756,243760..243762,243769..243777,
243784..243786,244276..244278,244282..244284,
244291..244299,244306..244308,244459..244461,
244465..244467,244474..244482,244489..244491,
244621..244623,244627..244629)
/locus_tag="Avi_5248"
/note="Trp docking motif [polypeptide binding]; other
site"
/db_xref="CDD:199838"
misc_feature order(242875..242877,242995..243000,243013..243015,
243262..243264,243307..243312,243466..243468,
243736..243738,244390..244392)
/locus_tag="Avi_5248"
/note="putative active site [active]"
/db_xref="CDD:199838"
gene complement(244751..245893)
/locus_tag="Avi_5249"
/db_xref="GeneID:7381371"
CDS complement(244751..245893)
/locus_tag="Avi_5249"
/codon_start=1
/transl_table=11
/product="transcriptional regulator ROK family"
/protein_id="YP_002547120.1"
/db_xref="GI:222106329"
/db_xref="GeneID:7381371"
/translation="MLTRQRPLHGIGTTQAAVLKHLRRNGIASRAELAELCGVTQAAV
SMMTRDLIARGIVIQGARRQSQRGAPHIDLMLAGNIGYALGVHANSYSLTVTLLDFCG
NRIGEQQLEGPYDRFSDIQTAIKSLRTDLLTSNGIDEGLLIGAAVAMPTRFRHGTAFL
DLAEEVVSWAGSDLASTLRETLDCPVMIENDANAAAMGELALGNASGHDNFAYLYLSE
GIGSGIIIGKELYRGNLGNAGEVGALRARGLSRPSFDDLAAWCKEHQGHIPKGRSSDQ
WTAYLQANPTVLDAWLRRAGPELATLAFMVTAVLAPSAIYIGGTLPRLVREKLAPWLD
FSTSNPFDGARVIQPDILIPQISAVDAVAFGAAAMILHSVPGNPGL"
misc_feature complement(245723..245869)
/locus_tag="Avi_5249"
/note="MarR family; Region: MarR_2; pfam12802"
/db_xref="CDD:205082"
misc_feature complement(244895..245668)
/locus_tag="Avi_5249"
/note="Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism];
Region: NagC; COG1940"
/db_xref="CDD:32123"
misc_feature complement(<245246..245644)
/locus_tag="Avi_5249"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature complement(order(245246..245251,245321..245323,
245612..245614,245618..245620,245624..245635))
/locus_tag="Avi_5249"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene 245990..247363
/locus_tag="Avi_5250"
/db_xref="GeneID:7381372"
CDS 245990..247363
/locus_tag="Avi_5250"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(sugar)"
/protein_id="YP_002547121.1"
/db_xref="GI:222106330"
/db_xref="GeneID:7381372"
/translation="MTKCLALLATVAISALATGWAHAEDIKIKLSTLADKTAPARITN
IEAAADIMNKQFKAAGVDKHIVIEANNSTVKGWDDLALDTLKAFAVGQGPDIYVVPHE
WISKFAEDGDALPMDERIAAAPWVYGDILPVLWKAAKGNDGKIYGIPQDAEIRMFFYN
KDMLRKIGKDEAFIEGLPAKVEAGEFTLDDLTALSKEVVDAKAAQYGMLHRPNVGIDY
LMVFQSYGVKFLDEKTGKLVFPKAEMTKALGWYERNAKQGVTPVDNTAMSWDAIQGAF
KQEKAFIFHQGVWAVAWQLGEMNGATWPTDRDGYFHKIGWIPAPAAEKGGKPANLSHP
LLYTVNAKSKNAEIAADLVALATLPYFNNQHAVTSYHTAISNAQTAMPKYKDNWVLSA
ASPMMAHAGFVPNHTQFGSYNKILFSGLQAVETGKMKAADAVEFIADEFETQFGSDVE
IRDTASN"
misc_feature 246002..247342
/locus_tag="Avi_5250"
/note="Maltose-binding periplasmic proteins/domains
[Carbohydrate transport and metabolism]; Region: MalE;
COG2182"
/db_xref="CDD:32365"
gene 247433..248344
/locus_tag="Avi_5252"
/db_xref="GeneID:7381373"
CDS 247433..248344
/locus_tag="Avi_5252"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002547122.1"
/db_xref="GI:222106331"
/db_xref="GeneID:7381373"
/translation="MSQFQIRAHRPARPILYLAPAIALLAVFFLAPILVNAVIAFTDM
GSNLRVGHFTLQNFERIVQRDARIPMVLLTTLIYVTATLFIFNVGLGALLAMTSTAIP
DRLGNFFRGLWLLPRMSPAVLYGILWIWIADPTPLGLLNQVTGAFGLPPVNLRNDFPL
LLVILANGVVGASFAMVILTSSIRSIPSHLAHAARVDGASEWGVLRHVVVPALAQPIR
FITIYQALSLMTTYEYILLITGGGPLYDSTPYALYIYRRAFESGAYAYGAALALGLMV
IGIAVTLVQWRVSNMRSTFAAPKIEVL"
misc_feature 247511..248167
/locus_tag="Avi_5252"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 247646..248176
/locus_tag="Avi_5252"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(247697..247702,247709..247714,247727..247729,
247757..247768,247772..247801,247808..247813,
247817..247819,247937..247942,247946..247948,
247952..247954,247961..247966,247970..247972,
247982..247987,247994..247996,248045..248047,
248087..248092,248099..248101,248120..248131,
248138..248143)
/locus_tag="Avi_5252"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(247775..247819,248120..248137)
/locus_tag="Avi_5252"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(247817..247819,247922..247924,248138..248140,
248174..248176)
/locus_tag="Avi_5252"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(247997..248035,248051..248056,248066..248068)
/locus_tag="Avi_5252"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 248344..249408
/locus_tag="Avi_5253"
/db_xref="GeneID:7381374"
CDS 248344..249408
/locus_tag="Avi_5253"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002547123.1"
/db_xref="GI:222106332"
/db_xref="GeneID:7381374"
/translation="MSMLQADTVPSPDWTRLERRGIVNRAGFLSALILFLTIVSIPIL
LPYLWLLVKSLTSSDGAVSRLVLWHSTAIAGVGYLGAIGLALLADRLRRPAVSWAVLA
MVIVILSAIFLVPHLSFDNYRFLWNPDIAKIGTNRMDLMPSIWSALGTSLVFAISQTA
IVTLVATPAAYALSRFAFAGRENILRGLLLLHAFPALALTVAIFIQLYYMGLLNNLVG
VVLVLSALELPFAIFVLKGFFDGVPWDIEMSAVTDGATRFQAFRMVILPQIRSGLIAV
ATFTFLRGWEEYVFVQTLLIEKNQMTMSLYLFFVAQDHMGADYGMIAAVGIVYLLPVL
VLYIFTQKYITQMSFGGIKG"
misc_feature 248647..249402
/locus_tag="Avi_5253"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 248785..249315
/locus_tag="Avi_5253"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(248833..248838,248845..248850,248863..248865,
248893..248904,248908..248937,248944..248949,
248953..248955,249016..249021,249025..249027,
249031..249033,249040..249045,249049..249051,
249061..249066,249073..249075,249124..249126,
249166..249171,249178..249180,249199..249210,
249217..249222,249262..249267,249295..249300,
249307..249312)
/locus_tag="Avi_5253"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(248911..248955,249199..249216)
/locus_tag="Avi_5253"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(248953..248955,249001..249003,249217..249219,
249256..249258,249265..249267,249295..249297)
/locus_tag="Avi_5253"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(249076..249114,249130..249135,249145..249147)
/locus_tag="Avi_5253"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 249414..250526
/locus_tag="Avi_5254"
/db_xref="GeneID:7381375"
CDS 249414..250526
/locus_tag="Avi_5254"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(sugar)"
/protein_id="YP_002547124.1"
/db_xref="GI:222106333"
/db_xref="GeneID:7381375"
/translation="MAKITLDNITKSWGETQVLKPMSLTIEDGELVAILGPSGCGKST
TLFLLAGLYAPTSGQIGFDGHNVNRVDARDRNVGIVFQSYALYPNLTVRDNIAFPLRF
KTMRKDEIARRVEEAANLVQISALLDRRPSQLSGGQQQRVALARALVKEPNILLLDEP
LSNLDATLRITMRAELKSIQKRLGFTTLIVTHDQIEAITMADRIICMNNGEIAQVGTP
DDLYRRPSNLFVAGFIGTPPMNLLKGHATGFKLRIGETSVALTGEREGEVTLGLRPED
ITLVSHADAPLSGEIISVEPMGREVFYMIDTPAGVIHALEYGEAVRHAPGARVGIVCK
PEHTLLFDASGNRIVDLYAKLLQHSDRLVKTLEPAN"
misc_feature 249414..250445
/locus_tag="Avi_5254"
/note="ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism]; Region: MalK;
COG3839"
/db_xref="CDD:33631"
misc_feature 249423..250118
/locus_tag="Avi_5254"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 249519..249542
/locus_tag="Avi_5254"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(249528..249533,249537..249545,249657..249659,
249885..249890,249987..249989)
/locus_tag="Avi_5254"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 249648..249659
/locus_tag="Avi_5254"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 249813..249842
/locus_tag="Avi_5254"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 249873..249890
/locus_tag="Avi_5254"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 249897..249908
/locus_tag="Avi_5254"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 249975..249995
/locus_tag="Avi_5254"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature 250221..250436
/locus_tag="Avi_5254"
/note="TOBE domain; Region: TOBE_2; pfam08402"
/db_xref="CDD:203932"
gene 250539..251261
/gene="ugpQ"
/locus_tag="Avi_5255"
/db_xref="GeneID:7381376"
CDS 250539..251261
/gene="ugpQ"
/locus_tag="Avi_5255"
/codon_start=1
/transl_table=11
/product="glycerophosphodiester phosphodiesterase"
/protein_id="YP_002547125.1"
/db_xref="GI:222106334"
/db_xref="GeneID:7381376"
/translation="MTKIVSHRGANQFAPENTFAAADLALQQGADYIELDVRESADGV
LYVFHDETLDRTTNGTGPIGHATSEEIDALDAGSWFSPAFKGAAVPRLDAYLQHLRGR
AGVYIELKYCDPAKVVALVRSLGMVGDTFYFSFSEDMRRDLQLIAPEFRKMMTLDIAK
SPSLVGAVHHATIIEMTVEHMRRPGLLEACRKAGLEVMIYYAGDEMAIHREIAKAGVD
YINLDRPDLFNAARCDHVEAAA"
misc_feature 250548..251231
/gene="ugpQ"
/locus_tag="Avi_5255"
/note="cytoplasmic glycerophosphodiester
phosphodiesterase; Provisional; Region: ugpQ; PRK09454"
/db_xref="CDD:181870"
misc_feature 250548..251213
/gene="ugpQ"
/locus_tag="Avi_5255"
/note="Glycerophosphodiester phosphodiesterase domain of
Agrobacterium tumefaciens and similar proteins; Region:
GDPD_AtGDE_like; cd08566"
/db_xref="CDD:176509"
misc_feature order(250557..250559,250638..250640,250644..250646,
250683..250685,250860..250862,250935..250937,
251136..251138)
/gene="ugpQ"
/locus_tag="Avi_5255"
/note="putative active site [active]"
/db_xref="CDD:176509"
misc_feature order(250557..250559,250683..250685)
/gene="ugpQ"
/locus_tag="Avi_5255"
/note="catalytic site [active]"
/db_xref="CDD:176509"
misc_feature order(250638..250640,250644..250646,250860..250862)
/gene="ugpQ"
/locus_tag="Avi_5255"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:176509"
misc_feature 250653..250667
/gene="ugpQ"
/locus_tag="Avi_5255"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:176509"
gene 251366..252814
/locus_tag="Avi_5256"
/db_xref="GeneID:7381377"
CDS 251366..252814
/locus_tag="Avi_5256"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547126.1"
/db_xref="GI:222106335"
/db_xref="GeneID:7381377"
/translation="MASTRVFNESHAAFLAVLDDIVRRGISDVVLLGDYSDDGQIGAV
AAVKRILSDYEDRHGLRFFATFGNHDCYGPAPRHLAKLLTQADGLEPLMVTSDDRAPA
PAIVCPGMRGMSTAEAMEAMAPYGVTRPETILHWETPHDTLEDGASRHLTTDERLHLD
ASYLVEPQEGLWLLMLDANVFQKTGEGWKVRADAAWDHVLAERPYLLAWIKQVADRAN
RLGKTLLAFSHYPALPLALTGEGSDVRAVSTPDWSKRMPSLETSRRLACAGIRWHFSG
HMHVAGRVELDGLVNIAVPSPVAYPGGCVVVTAKAKQIDIETVQMNVAKGFDIAFPAY
QVQSGGNNRPWFPKLLSYATYAEFLRAHLQNLIETKHIPDDWSPELLAYLDVTMGHLF
CEDSRLAGLTVGYSDVMSQPFRQMIEDYYLLRAAGRHALGEIPAERVVFYRDLATHLR
SQDRVGMGVSRDVARFLELFAACTDFDGWLND"
misc_feature 251390..>251590
/locus_tag="Avi_5256"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature <251450..>251584
/locus_tag="Avi_5256"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:212351"
gene complement(252873..253247)
/locus_tag="Avi_5257"
/db_xref="GeneID:7381378"
CDS complement(252873..253247)
/locus_tag="Avi_5257"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_002547127.1"
/db_xref="GI:222106336"
/db_xref="GeneID:7381378"
/translation="MRAGAESVYPDHLDFIIERLGSAVGRAIIDLGYADWRISELQVL
KQARGSGIGSNVIRGLQAAAIKGNIPLTLSTPVFGSNGFPIYQRLGFQVVQAQPPMIH
MAWFPPGHPDRREMSGGNGLGG"
misc_feature complement(252900..>253196)
/locus_tag="Avi_5257"
/note="Acetyltransferases [General function prediction
only]; Region: RimI; COG0456"
/db_xref="CDD:30804"
gene complement(253450..253761)
/locus_tag="Avi_5258"
/db_xref="GeneID:7381379"
CDS complement(253450..253761)
/locus_tag="Avi_5258"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547128.1"
/db_xref="GI:222106337"
/db_xref="GeneID:7381379"
/translation="MIGLILDAAKFTPYIGDDFTLTAQETVINAVLAKVVEYPASTAP
GAARTAFSLFLCVQHNAFPDIQSGDYAIEHRSLDKIGLAYIERILSPQPDVIRLEVAF
N"
gene complement(253758..254432)
/locus_tag="Avi_5259"
/db_xref="GeneID:7381380"
CDS complement(253758..254432)
/locus_tag="Avi_5259"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547129.1"
/db_xref="GI:222106338"
/db_xref="GeneID:7381380"
/translation="MDAFLATILPVGFNYAPDGWLMCWGQKLTINQYNAVYSLVSNFY
GGDQQTYFNLPDLRGQMPIGYGQRTPTSPNYAIGNKGGNDTVSLNSTQIPAHTHAAVF
TPTGNATVNIPAQTGTQTATMKASPAAGTSQLPTAGSALAGGNTAATRIYGAASTTPV
TLDSSSVTISGNAPTAAQSIATNAITGGAVTVQPFGTGAAIDAKPPYLAINFIFCVQG
LYPVRP"
misc_feature complement(253761..254432)
/locus_tag="Avi_5259"
/note="Microcystin-dependent protein [Function unknown];
Region: MdpB; COG4675"
/db_xref="CDD:34292"
misc_feature complement(254247..254414)
/locus_tag="Avi_5259"
/note="Phage Tail Collar Domain; Region: Collar;
pfam07484"
/db_xref="CDD:203644"
gene 254829..260468
/locus_tag="Avi_5260"
/db_xref="GeneID:7381381"
CDS 254829..260468
/locus_tag="Avi_5260"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547130.1"
/db_xref="GI:222106339"
/db_xref="GeneID:7381381"
/translation="MQFGKSFRVAHVLADPKTLAWTRLKRSAGAAFRAFIGVLTILIT
GLSFATTANAALSASCSQVNSDFSSPRYLTNTDNFSPDYQNLTAGEYISWSFSTTGTA
AGGTSSAIVIYSDNYNNLLVNESNLGGNINKSGNFTASASVDNLQMILDVTQDNSASP
SNYNTLTFSAACYASAPTSPGAPTIGTATPGNSQATVSFTAPASDGGAAITSYTVTAS
PGGATATGSASPITVTGLTNGTAYTFTVTATNSVGTGTASAATSAVTPTVPTFTFSPA
SGALTAATVGTAYSQTVTASGGTSPYTYAVSSGTLPAGMSLNTSTGEISGTPSSVESA
SFTISATDANSATSSASYSLAVAAGLPGAPTIGSATAGNGQATVSFTAPVSNGGAAIT
SYTVTASPGGATATGSASPINVTGLANGTAYTFTVTATNSVGTGAASAATSSVTPTAP
TFTFSPASGALTAATVGTAYSETVTVSGGTSPYTYAVTSGTLPAGMSLNTSTGAISGT
PTTAGSASFTITATDANSATGSANYSLAVAADVPGAPTIGTASAGDSQATVSFTAPAS
DGGASITSYTVTASPGGATGTGSASPITVTGLTNGTAYTFTVTATNSAGTGTASTASN
SVTPGASLQAPIANAVSDTVSANSSNNPITLNMTGGAASSVAIATAASHGTASASGTS
ITYTPTAGYSGSDSFTYTATNATGTSSPATVTITVTAPAFTLSPASGTLTAATVGTAY
SETVTVSGGTSPYTYAVTSGTLPAGMSLNTTTGAISGTPTTAANTSFTITATDANSAT
GSASYSLAVAADVPGAPTIGTASAGDSQATVSFTAPASDGGASITSYTVTASPGGATG
TGSASPITVTGLTNGTAYTFTVTATNSAGTGTVSVASNSVTPSAVLQAPVVNAVSETV
AANSSANVITLNMTGGTASSVAVASVASHGTATASGTSITYTPTTGYSGSDSFTYTAT
NATGTSSPATVTITVTAPTLVLSPSAGTLAAGTVGAAYSQTVAVSGGAEPYDYEFLSG
SLPAGLSITSSGGASARILSGTPSAAGTSNFTVKVTDAYGATVTASYSITINAAAPIA
NALTATVTANSSDNVLAPSITGGAATAVTIASSPSHGAATVSGTNFIYTPTAGYSGAD
SFTYTATNSTGTSSPATVTITVTAPAFTLSPASGTLTAATVGTAYSETVTASGGTSPY
TYAVTSGTLPAGMSLSTSTGAISGTPTTAANTSFTITATDANGASGSASYSLAVTEPS
VTLTLSPSSGALTTATVGTAYSQSVTTTSGTAPYTYAGTGLPDGLVLDTSTGTISGTP
TTAGSYAIAVTVTDSASPANHGSGNYTLTVNAAASIAFSPAGGALKEAMAGEAYSQQI
SATGGTGSLIYSLSSGSLPKGMVLNISTGALNGPLDAGTEGDYSFAIQARDSNGTTGT
ASYTVKVTTRAVTVADHVVDVPAGATPNNVYLNKDATGGPFTEADIVSVEPPEAGTAT
LIQGELAAVSSASPVGWYLKFTPNPAYSGQARIAYRLGSSLGNSNTGTVIYNINYNAE
QVATDIDNLVHSFVQTRQNMISSAIKVPGLMERGRMARATTPVTTRMSPSTQGMTFGF
STSLAQMESARDSADGVAGGYSSPFNIWIDGAVLAHNDKDTNGSKWGSFAMINMGADY
LLTDKALLGLSFHYDRMTDPTDEDAMLTGNGWLAGPYTSFEVTKGVFWDASLLYGGSS
NTIDTQLWDGNFDTQRWMLDTSIKGKWSLDEATVVTPKLRAVYFSETVDDYAVKNSSG
DTIDLDGFTSEQFRVSLGAEIARSFTLASGSTMTPKLGITTGFSGLDGSGLFGSVTAG
ASLQTTEAWAIEGSLLFNIEGEGEKSVGAKVGLSRKF"
misc_feature 256290..256403
/locus_tag="Avi_5260"
/note="Putative Ig domain; Region: He_PIG; pfam05345"
/db_xref="CDD:114088"
misc_feature 257262..257519
/locus_tag="Avi_5260"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature order(257262..257264,257436..257438,257481..257483)
/locus_tag="Avi_5260"
/note="Interdomain contacts; other site"
/db_xref="CDD:28945"
misc_feature order(257484..257489,257493..257498)
/locus_tag="Avi_5260"
/note="Cytokine receptor motif; other site"
/db_xref="CDD:28945"
misc_feature 258453..258569
/locus_tag="Avi_5260"
/note="Putative Ig domain; Region: He_PIG; pfam05345"
/db_xref="CDD:114088"
misc_feature 259812..>260297
/locus_tag="Avi_5260"
/note="Autotransporter beta-domain; Region:
Autotransporter; smart00869"
/db_xref="CDD:197937"
gene 260885..262903
/locus_tag="Avi_5261"
/db_xref="GeneID:7381382"
CDS 260885..262903
/locus_tag="Avi_5261"
/codon_start=1
/transl_table=11
/product="Valyl-tRNA synthetase"
/protein_id="YP_002547131.1"
/db_xref="GI:222106340"
/db_xref="GeneID:7381382"
/translation="MDHMKASTESTAPNGTDTVIVRAAIHPAIGIARIGDAKTEYFIG
PEVTDAPPENAPPPSFYRDKTGAIKRQAARFRIYGYNAAGDVVSELTSDNADIHWTVH
VANRKAQWYQFQYALDIPEAINAPDNAFPLRNPKVMDRSTLAIDPGPRSISGRGVSGP
AYAFDTGTFKAAAAEPVVVPLGELQTDAGGRLIFLGGHGKSASPTNAPVYDPDNPPSF
NNANDWYDDTSDGPVMAEISINGQSIPVESAWVVVAPPNYAPDIISWRTMYDLMCDVS
VQAGWMPMPREPSFSTDILPILQRLSNLQWVNKGFAAYFGKGCPLDFNNPDLLAKLSQ
KPAGLREGDDPYGELRRTLFNGFRPSAPIVAEPVQWSHVQPWIYGDAFGSFSETGPGN
MLTMTGLQEAILRKWVEGSFIDDWPEAIKPVSKIEEVPLPGQPHMLDKAALHYCLSDT
FHPGCEMTWPMRHASLYSAPFRIRLRPAGTPEPDYGTTMTPILVEKVGGPLYDQPPGG
ITRWMAIPWQGDTAFCRSGYDPEFDPYLPTFWAARVPNQVLSEEDYNKVIDETLPRAE
RIAAYSRRVNWLRAIMNHDTAQVMMDMIAEFGQLGIVEARPGVKGDPDFPEYIYVETL
AASKLKRAADHAVRLLAETPQPLTKLEKAGWASREQLEAFRAVRVQKR"
gene 262944..264044
/locus_tag="Avi_5262"
/db_xref="GeneID:7381383"
CDS 262944..264044
/locus_tag="Avi_5262"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547132.1"
/db_xref="GI:222106341"
/db_xref="GeneID:7381383"
/translation="MFDVVVAGAGPAGAIAARHLARAGRSVVMLDRLRSHAPRLGETL
PGAAQRLLVQQGLADLAVPGPQHARVGGGLTVWGDEHVVASDALRDPYGSGLRLDRAQ
FDADLRQASLEASCFWWKVNVSGVKRQDGLWVIGLDDGRILRASYIIDATGRSARIVR
LLGVAQHRGTALVSLYQVAKPQKNADLERTLIEATPDGWIYAGRLADGFWAVGYHTSP
QQAVRLRRSPDYRAALFTEAPHLTSCLGALEWAGPVFARDARSLNAITPCGEGWYAVG
DAALAFDPIAGQGLFNALRTGIAAAEGILASPASGLSSYAEELARVRAIYNTRRQSLY
RSESRWLDRDFWKMQQDQVAVPVDVGRQLAAI"
misc_feature 262947..263855
/locus_tag="Avi_5262"
/note="geranylgeranyl reductase family; Region: GG-red-SF;
TIGR02032"
/db_xref="CDD:200151"
gene complement(264063..264431)
/gene="phaG"
/locus_tag="Avi_5263"
/db_xref="GeneID:7381384"
CDS complement(264063..264431)
/gene="phaG"
/locus_tag="Avi_5263"
/note="subunit G of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
G"
/protein_id="YP_002547133.1"
/db_xref="GI:222106342"
/db_xref="GeneID:7381384"
/translation="MIYSATDIPVWAAICVAFFLLAGATLALIGAIGFLRLPTFYERI
HAPTLGTSWGVGGIMLGSMIFFSVASSRLAIHEILIGILVTVTTPVTLMMLARAALHR
DRVERNGNVPPKQIAKSQAE"
misc_feature complement(264069..264428)
/gene="phaG"
/locus_tag="Avi_5263"
/note="putative monovalent cation/H+ antiporter subunit G;
Reviewed; Region: PRK12671"
/db_xref="CDD:183670"
gene complement(264428..264709)
/gene="phaF"
/locus_tag="Avi_5264"
/db_xref="GeneID:7381385"
CDS complement(264428..264709)
/gene="phaF"
/locus_tag="Avi_5264"
/codon_start=1
/transl_table=11
/product="PH Adaption potassium efflux system"
/protein_id="YP_002547134.1"
/db_xref="GI:222106343"
/db_xref="GeneID:7381385"
/translation="MSAIILFSAVSLAQLMLVASMAIVSVRMFIGPRAQDRIIGLDTF
YINAMLLLVTFGVGTGRQIYFEAALVIGMLGFVASVALGKFLMRGEVIE"
misc_feature complement(264431..264697)
/gene="phaF"
/locus_tag="Avi_5264"
/note="putative monovalent cation/H+ antiporter subunit F;
Reviewed; Region: PRK06161"
/db_xref="CDD:180435"
gene complement(264706..265182)
/gene="phaE"
/locus_tag="Avi_5265"
/db_xref="GeneID:7381386"
CDS complement(264706..265182)
/gene="phaE"
/locus_tag="Avi_5265"
/note="subunit E of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali; in S. meliloti it is known to be involved
specifically with K+ transport"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
E"
/protein_id="YP_002547135.1"
/db_xref="GI:222106344"
/db_xref="GeneID:7381386"
/translation="MLPYPVLTLSLVVMWLLLNGFTLGHLILGIFVAVFAGWAMASLR
PEKPHLKKWYLLPKLFLVVLYDIAKSNIAVAAIIIRSGSRQHDPGFVIIQLEIKSQFA
LAVLAVILTSTPGSAWLEYDSNDNSVLLHVLDIKDETIWRDTIKNRYEKLLLEIFA"
misc_feature complement(264709..265182)
/gene="phaE"
/locus_tag="Avi_5265"
/note="putative monovalent cation/H+ antiporter subunit E;
Reviewed; Region: PRK08965"
/db_xref="CDD:181598"
gene complement(265182..266813)
/gene="phaD"
/locus_tag="Avi_5266"
/db_xref="GeneID:7381387"
CDS complement(265182..266813)
/gene="phaD"
/locus_tag="Avi_5266"
/note="subunit D of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali; contains an oxidoreductase domain; catalyzes the
transfer of electrons from NADH to ubiquinone"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
D"
/protein_id="YP_002547136.1"
/db_xref="GI:222106345"
/db_xref="GeneID:7381387"
/translation="MNGWAHHLIIAPVLVPLVASAVLLLVDERQRLTKAMISLASAVA
LAAIAIILFRIESGPNSFENVYLVGNWAAPFGIVLVLDGLSALMLLLTALLAIPALVF
SFARWHAVGAHFHSMFQLLLMGVNGAFLTGDLFNLFVFFEVMLAASYGLLLHGSGPLR
VKAGLHYIAVNLVAALLFLIGVSLIYGTAGTLNMADLAARIPEMEPDRRMLMEAGAGI
LGVVFLIKAGMWPLCFWLPTAYSAASAPVAGIFAIMSKLGIYVILRLTMLLFAEGPSA
GFGAGVLLYGGMATLVFGTIGVLASQALGRLAGFSVLVSSGTLLMVVGINDGAVSSGA
LLYLVSSTLTISAFFMLIELVERGQDAGANVLAVTMDAYGDADEQAPYEEEGVTMPGT
MAILGICFAACGILLSGLPPLSGFIAKFAMLSAMMGTGAIGSPPTMAIWALIVLVILS
GIAALISMTRAGIRTFWSSIEGTVPPVLVIEIVPVMFLLALTLALTVQAGPAMHYMDT
TIRALSNPANYIDAVRKATQIPGFKSLSSTGKESE"
misc_feature complement(265221..266810)
/gene="phaD"
/locus_tag="Avi_5266"
/note="putative monovalent cation/H+ antiporter subunit D;
Reviewed; Region: PRK12666"
/db_xref="CDD:183666"
misc_feature complement(265749..266420)
/gene="phaD"
/locus_tag="Avi_5266"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene complement(266810..267145)
/gene="phaC"
/locus_tag="Avi_5268"
/db_xref="GeneID:7381388"
CDS complement(266810..267145)
/gene="phaC"
/locus_tag="Avi_5268"
/note="subunit C of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
C"
/protein_id="YP_002547137.1"
/db_xref="GI:222106346"
/db_xref="GeneID:7381388"
/translation="MELVLSIAIGVMTGCGVWLILRPRTYQVIVGLSLLSYAVNLFIF
GVGGVKANVPPILGDDGAGHLADPVPQALVLTAIVIGFATTALFLVVLLASRGLTGSD
HVDGRNEPK"
misc_feature complement(266813..267145)
/gene="phaC"
/locus_tag="Avi_5268"
/note="putative monovalent cation/H+ antiporter subunit C;
Reviewed; Region: PRK09094"
/db_xref="CDD:181645"
gene complement(267145..270048)
/gene="phaA"
/locus_tag="Avi_5269"
/db_xref="GeneID:7381389"
CDS complement(267145..270048)
/gene="phaA"
/locus_tag="Avi_5269"
/note="subunit A of antiporter complex involved in
resistance to high concentrations of Na+, K+, Li+ and/or
alkali; in S. meliloti it is known to be involved with K+"
/codon_start=1
/transl_table=11
/product="putative monovalent cation/H+ antiporter subunit
A"
/protein_id="YP_002547138.1"
/db_xref="GI:222106347"
/db_xref="GeneID:7381389"
/translation="MLVVLLLLPFVGSLLSVFLLNTPSRRLPAGSAAIVMLISLALTA
SLYPAVADGGVVRFNMPWLPQLGLDFTLRMDGLAWIFTMLIAAIGFLVVLYARYYMSE
EDPVPRFFSFLLAFMGAMLGIVLSGNVILLSVFWELTSIFSFLLISYWHNNPNARDGA
RMALTITGIGGFCLLIGLILLGNIVGSYDLDTILDSGNVIREHSLYVPALVFILLGAL
TKSAQFPFHFWLPNAMAAPTPVSAFLHSATMVKAGVFLLVRFWPVLSGTDEWFWIVGA
AGITTLLLGAYFAMFQQDLKGLLAYSTISHLGLITTLLSLGSPLATVAAIFHMLNHAT
FKASLFMAAGIIDHETGTRDMRRLSGLFRFMPFTATLAIVASAAMAGVPLLNGFLSKE
MFFAEAVETHADSILDTILPYVATLASAFSVAYSLRFIHTVFFGPPPQDLPVARPHEP
PRWMRFPVEFLVLACLIVGIIPAISIGPFLHVAVVSVLRADTPEYSLAIWHGVNLPLV
MSMIALVGGGLIYFLLKDYLARCHDGPPFFHKFKGQRIFERVIVEVSWHWARIAERRL
GTRKLQPQLRWLVTVGFAAGMLPLYIRGFEVRPLVYSGADPVFAALWAIGICLAIGTA
YLAKYHRLASLVMLGGVGLIVCLTFVWLSAPDLAITQLLVEIVTTVLILLGLRWLPKR
SEGLGETMTLSARFRRFRDFALAVLCGVAMSFTAYAVMTMPVPDAIASYFLENAYSQG
GGRNVVNVILVDFRGFDTLGEIAVLGVVALTVYGLLRRFRPAEDSMGMPEQQQAQNRF
DEERPERSAGDTVRDYLLIPSVIMQWLFPVIVTLSVYLFMRGHDLPGGGFSAGLTLSI
AFLLQYLAGGTRWAEDRIRILPLRWMGIGLLTAVATGIGAWLLGYPFLTSHSRYIDLP
LIGKIPAATALLFDLGVFALVVGSTVLILVALAHQSLRINRLRMIDASKSEEG"
misc_feature complement(267151..269979)
/gene="phaA"
/locus_tag="Avi_5269"
/note="putative monovalent cation/H+ antiporter subunit A;
Reviewed; Region: PRK12648"
/db_xref="CDD:183648"
misc_feature complement(269707..269877)
/gene="phaA"
/locus_tag="Avi_5269"
/note="NADH-Ubiquinone oxidoreductase (complex I), chain 5
N-terminus; Region: Oxidored_q1_N; pfam00662"
/db_xref="CDD:109709"
misc_feature complement(268855..269673)
/gene="phaA"
/locus_tag="Avi_5269"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
misc_feature complement(267706..268215)
/gene="phaA"
/locus_tag="Avi_5269"
/note="Multisubunit Na+/H+ antiporter, MnhB subunit
[Inorganic ion transport and metabolism]; Region: MnhB;
COG2111"
/db_xref="CDD:32294"
misc_feature complement(267223..267543)
/gene="phaA"
/locus_tag="Avi_5269"
/note="monovalent cation:proton antiporter; Region:
2a6301s02; TIGR00943"
/db_xref="CDD:130018"
gene 270661..271647
/locus_tag="Avi_5270"
/db_xref="GeneID:7381390"
CDS 270661..271647
/locus_tag="Avi_5270"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547139.1"
/db_xref="GI:222106348"
/db_xref="GeneID:7381390"
/translation="MGKQFLMSRRSVLASGMALGVSAFAPSLRAAAPIKVAGIHGSPV
ENAWNSVLHKALQDAAKEGMIEYVFSEGVSGTDYPRAMREYAEQNAKLIIGETFPVEK
QAREVAADYPKTAFVMGSSGKLSGDNFGVFGTWNFDGAYLAGMLAGKMTKSNIVGSVG
AMPIPEVNMLINAFGAGVKAVNPNAKHLVTFIGTFFDPPKAREAGLAQIDAGADILFG
ERIGTADAAKERGIKSVGSLIDYTPRYPNTVFANALWNFRPILNAALADVAAGKPTGR
DYTAYGLMKEGGSDIVFVKGVAPADAEAAMEAKRAEIKAGTFEVPKIMTEPK"
misc_feature 270667..271644
/locus_tag="Avi_5270"
/note="Uncharacterized ABC-type transport system,
periplasmic component/surface lipoprotein [General
function prediction only]; Region: Med; COG1744"
/db_xref="CDD:31930"
misc_feature 270763..271524
/locus_tag="Avi_5270"
/note="Periplasmic binding domain of the basic membrane
lipoprotein Med in Bacillus and its close homologs from
other bacteria and Archaea; Region: PBP1_BmpA_Med_like;
cd06353"
/db_xref="CDD:107348"
misc_feature order(270781..270786,270805..270807,271018..271020,
271159..271161,271243..271245,271372..271374,
271423..271425)
/locus_tag="Avi_5270"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107348"
gene 271655..273064
/gene="gatA"
/locus_tag="Avi_5271"
/db_xref="GeneID:7381391"
CDS 271655..273064
/gene="gatA"
/locus_tag="Avi_5271"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA amidotransferase subunit A"
/protein_id="YP_002547140.1"
/db_xref="GI:222106349"
/db_xref="GeneID:7381391"
/translation="MQADATALAQAIAHGRLSATEAMKASISAAETLNDLGAIAYMDA
EKGLEAARALDALPLDAKPRSAMAFAGVPTLAKDLGGPFAGFPVVAGSRLMARRGGLV
DSDLAERFRSKGFCVFGLTTSPEFGLSLASEPQIGPICRNPLDSARTAGGSSGGAAAA
VAAGIVAIAHATDAGGSIRVPAACCGLVGLKPSRGAMPSGPSFGNHLGGIASELVVSR
SVRDTATSFSVLSGNVKGPFPPFSPTLPKAGRLRIGILTDTGDQYATDSERLVAIDEA
GRALEADGHQLVPIVFSQIAQPAAASNDAFVNIVCANLAETFSKFNLDASKTETLTQA
TIERGLALPAALLWRSLNAMVLVSRDLWRLFDDVDCLLCPMLSSAPLPIGSFPSDHRD
TDLHFDRMARFAPLAALANASGCPAITLPYGSDASGLPLPVQMLAPMGSEPLLLQLAA
RLESDQRFQQRFPIAGFAP"
misc_feature 271697..273043
/gene="gatA"
/locus_tag="Avi_5271"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure and
biogenesis]; Region: GatA; COG0154"
/db_xref="CDD:30503"
misc_feature 271859..272992
/gene="gatA"
/locus_tag="Avi_5271"
/note="Amidase; Region: Amidase; cl11426"
/db_xref="CDD:212316"
gene 273061..274581
/locus_tag="Avi_5272"
/db_xref="GeneID:7381392"
CDS 273061..274581
/locus_tag="Avi_5272"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(sugar/ribonucleotide)"
/protein_id="YP_002547141.1"
/db_xref="GI:222106350"
/db_xref="GeneID:7381392"
/translation="MMVPVLDILGVSKRFGSNLANDDISLSLAKGEILALLGENGAGK
TTLMSILFGHYVPDSGKVLVEGKELPPGKPRAAIRAGIGMVHQHFSLAPNLTVLENVT
TGTESLWSVRSRRAQAREKLMAISSRFGLKVHPDARLGDLSVGEQQRVEILKALYNDA
RILVLDEPTAVLTQIEAEMLFTTLKDMAAQGLSLIFISHKLDEVMSAADRIVVLRGGR
RVAERKAAETSKAELAELMVGRTVTRPVRESSTPGDIVLETAHLSVRKDGVNVLKAID
FRLRAGEVLGIIGVSGNGQGVLAQVLSGTMPHTAGDILLFGTPVENLSVADVVTAGIG
RIPEDRNKEGAIGEMAIWENAILERLPAFSRHGLVNRKAGMEFARTIIEQFDVRGGTP
ASRIRLLSGGNMQKLILGRNLINRPRILLAAQPARGLDEGAVAAVHERILEARRAGTA
VLLISEDLDEVMALADRIQAIVGGRLSPPINAEDANARKLGLMMAGEWQAEVSHAV"
misc_feature 273064..274548
/locus_tag="Avi_5272"
/note="ABC-type uncharacterized transport systems, ATPase
components [General function prediction only]; Region:
COG3845"
/db_xref="CDD:33636"
misc_feature 273076..273741
/locus_tag="Avi_5272"
/note="The Mj1267/LivG ABC transporter subfamily is
involved in the transport of the hydrophobic amino acids
leucine, isoleucine and valine. MJ1267 is a
branched-chain amino acid transporter with 29% similarity
to both the LivF and LivG components of the E; Region:
ABC_Mj1267_LivG_branched; cd03219"
/db_xref="CDD:72978"
misc_feature 273172..273195
/locus_tag="Avi_5272"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72978"
misc_feature order(273181..273186,273190..273198,273319..273321,
273556..273561,273655..273657)
/locus_tag="Avi_5272"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72978"
misc_feature 273310..273321
/locus_tag="Avi_5272"
/note="Q-loop/lid; other site"
/db_xref="CDD:72978"
misc_feature 273484..273513
/locus_tag="Avi_5272"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72978"
misc_feature 273544..273561
/locus_tag="Avi_5272"
/note="Walker B; other site"
/db_xref="CDD:72978"
misc_feature 273568..273579
/locus_tag="Avi_5272"
/note="D-loop; other site"
/db_xref="CDD:72978"
misc_feature 273643..273663
/locus_tag="Avi_5272"
/note="H-loop/switch region; other site"
/db_xref="CDD:72978"
misc_feature 273817..274488
/locus_tag="Avi_5272"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene 274571..275620
/locus_tag="Avi_5273"
/db_xref="GeneID:7381393"
CDS 274571..275620
/locus_tag="Avi_5273"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002547142.1"
/db_xref="GI:222106351"
/db_xref="GeneID:7381393"
/translation="MRFERREHRPLVLVIATPIMAIVAALAISGILIAIAGAPVLEAY
WRILIGAFGSRLSTTETLTRATPLMLTGLSAAVAFRARLWNIGAEGQLYLGAITVAAA
SSHLLSDFPPVIQIPALLILGALAGMVLLLVPLWLRLRFSVDEVVTTLLLNFVAVLFV
SMLIDTGLKDPMAFGWPQSQSVADAAMLPKLLARSRLHLGLVIAVVLALVLHFVQQRT
VFGIRSRAAGLNPAGAVFAGVPLGRTLVMVACISGGLAGLAGAVEVMGVKGYVTTDLS
PGYGYSGIVVAMLANLNPLGVVLAALFTATMFVGADSMSRAMGIPSYIADVTVALSLL
TMLIALFFTQYRIVR"
misc_feature 274763..275581
/locus_tag="Avi_5273"
/note="Transmembrane subunit (TM) of Treponema pallidum
(Tp) RbsC-1, RbsC-2 and related proteins. This is a
functionally uncharacterized subgroup of TMs which belong
to a larger group of TMs of Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette; Region:
TM_PBP1_transp_TpRbsC_like; cd06580"
/db_xref="CDD:119322"
misc_feature 275264..275320
/locus_tag="Avi_5273"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119322"
gene 275617..276561
/locus_tag="Avi_5274"
/db_xref="GeneID:7381394"
CDS 275617..276561
/locus_tag="Avi_5274"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002547143.1"
/db_xref="GI:222106352"
/db_xref="GeneID:7381394"
/translation="MSAMMDILASTGLWAAVLRIATPLIFGTLGALLCERAGVLNLGI
EGIMTFGAMIGWLSVYHGADLWTGLLIAALAGGVFGALHALLTVTLGLSQHVCGLGIT
LFASSFSYYTFRLAVPVAGSPPTIVPFKPIAIPGLSDLPFVGPAFFVQTPPTYLAILL
AIILAYVIFRTPLGLAIRMTGENPHAAEAQGINPMAVRYGAVIAGSALMGMAGAFLTL
SAFNSFFPTMVQGRGWICIALVVFSSWRPGRALLGALLFAFFDGFQLRLQTALGGAVP
YQLFLMTPYILSIAALAVMARRARVPQALMQPYRRGER"
misc_feature 275677..276483
/locus_tag="Avi_5274"
/note="Transmembrane subunit (TM) of Treponema pallidum
(Tp) RbsC-1, RbsC-2 and related proteins. This is a
functionally uncharacterized subgroup of TMs which belong
to a larger group of TMs of Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette; Region:
TM_PBP1_transp_TpRbsC_like; cd06580"
/db_xref="CDD:119322"
misc_feature 276169..276225
/locus_tag="Avi_5274"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119322"
gene 276755..277867
/locus_tag="Avi_5276"
/db_xref="GeneID:7381395"
CDS 276755..277867
/locus_tag="Avi_5276"
/note="Catalyzes the deamination of cytosine to uracil and
ammonia"
/codon_start=1
/transl_table=11
/product="cytosine deaminase"
/protein_id="YP_002547144.1"
/db_xref="GI:222106353"
/db_xref="GeneID:7381395"
/translation="MDATLSLGMPRMNVSGTLLEGIALWGELRPLLTKEALVERALRY
CDLAVSQGLLFIRSHVDTSDPRLVTAEALIEVRERVAPYIQLQLVAFPQDGYYRAEGG
VSSLNRALDMGIDIVGGIPHFERTMDEGRLSLEALCRIAAERGLPVDIHCDETDDPMS
RHIETLAAETIRHGLQGRVAGSHLTSMHSMDNYYVSKLIPLMAEAQINVIPNPLINIM
LQGRHDTYPKRRGMTRVRELMAAGLNVSFGQDCTMDPWYSMGSADMLEVGHMAIHVAQ
MGGLDDKRQIFDALTVNSAKTMGLEGYGLEIGCKADLIVLQAADVFEALRLKPSRLFV
VKGGKVISRTAPRIGELFLEGRPAAVDSGRDYVPVY"
misc_feature 276755..277855
/locus_tag="Avi_5276"
/note="cytosine deaminase; Validated; Region: PRK07572"
/db_xref="CDD:181039"
misc_feature 276755..277777
/locus_tag="Avi_5276"
/note="Bacterial cytosine deaminase and related
metal-dependent hydrolases. Cytosine deaminases (CDs)
catalyze the deamination of cytosine, producing uracil and
ammonia. They play an important role in pyrimidine
salvage. CDs are present in prokaryotes and fungi; Region:
Bact_CD; cd01293"
/db_xref="CDD:30036"
misc_feature order(277205..277207,277214..277216,277301..277303,
277502..277504)
/locus_tag="Avi_5276"
/note="active site"
/db_xref="CDD:30036"
gene complement(277861..279468)
/locus_tag="Avi_5277"
/db_xref="GeneID:7381396"
CDS complement(277861..279468)
/locus_tag="Avi_5277"
/codon_start=1
/transl_table=11
/product="cytosine deaminase"
/protein_id="YP_002547145.1"
/db_xref="GI:222106354"
/db_xref="GeneID:7381396"
/translation="MTQAITMPDNPGADCIIEAGIVLTGLDAGSGLTGLGADGKMTMR
HDVGIRVEKGMIAQIGPMEAVGYGNDHLPRFGSRRMIAMPGLVNAHHHFGVTPLMQGV
PFAPLELWLPQFRAMRRIDQRLDTLYSAIEMLESGTTTVQHIHSGFSGTPDSWMQTAE
ATISAYGEIGMRLGYCFMIRDRNILSYEPDADILSRLPAKLRDWIAPQLAAADIPVPR
LMEFYTDLRARFMKGSPQHIRMNLAPANLHWCSDNALQTIFETAKAAGGNVHMHLLET
ERQAEFARRTYGRSAVQHLQKLQCLDANVTLGHGNWMSGEDLDIIASCGCTICHNASS
GLRLGSGIAPVNEMRRRGIPVALGIDQSNIADDRDMTLEMKLVWALHRETGLWNDRPD
AGAVLQMASEHGAASAGFGGFTGRLEPGWQADIVLMDKDRIARPAINSRTPPVEALLH
RGGRHAIEQVFVGGRLVVDGGRVTTVDRDAVMAEIEAILSRPETDAERYAWQAVETLL
PHLESSLQQLGLGAGYRRYRYNSMSDQ"
misc_feature complement(278086..279333)
/locus_tag="Avi_5277"
/note="Cytosine deaminase and related metal-dependent
hydrolases [Nucleotide transport and metabolism / General
function prediction only]; Region: SsnA; COG0402"
/db_xref="CDD:30751"
misc_feature complement(278086..279333)
/locus_tag="Avi_5277"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature complement(order(278389..278391,278542..278544,
278653..278655,279193..279195,279199..279201))
/locus_tag="Avi_5277"
/note="active site"
/db_xref="CDD:30035"
gene complement(279465..280511)
/locus_tag="Avi_5278"
/db_xref="GeneID:7381397"
CDS complement(279465..280511)
/locus_tag="Avi_5278"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547146.1"
/db_xref="GI:222106355"
/db_xref="GeneID:7381397"
/translation="MMEPTKAAEVEALLAEMPAWGSEFTGTFANHAPMVLYALAEIGG
TPAQMRRFFDHYKGIKKLLPFGQPSTPLDATTWRSVLGQREREPDLRLFFSAEVSRIG
IEAALKHYLPDLAPGVAASAFHALMRTAYGVLRQNQGDIAIALAYWAATYLALPPATG
ASPVTDDPAEVLRRVTLIAPMHTLTLHDLLWQNMRDAAALPDFVPVVDWLEIGPDTME
KMAAVAIRLFAATQHFAALHVVTGLHWIRLLTPTCDRQTRDTMLRVFWQAIAALMREL
DFPTLPPEEEISRWRALAAPDWPVIFAAAASSYDEHDISLAYSAAQEMTIYADPLYRV
AAARRLGLIGDYRI"
misc_feature complement(279549..280430)
/locus_tag="Avi_5278"
/note="Protein of unknown function (DUF4243); Region:
DUF4243; pfam14027"
/db_xref="CDD:206197"
gene complement(280508..281344)
/locus_tag="Avi_5280"
/db_xref="GeneID:7381398"
CDS complement(280508..281344)
/locus_tag="Avi_5280"
/codon_start=1
/transl_table=11
/product="creatinine amidohydrolase"
/protein_id="YP_002547147.1"
/db_xref="GI:222106356"
/db_xref="GeneID:7381398"
/translation="MTRSFYWVDHSTQTFAERDLSKTVVVLPIAAVEQHGPHLPVDVD
AAINAEIIRRTVARLQPDTDVLFLPPMMVGKSDEHIAFPGTLAISGETLRHVWLDLAR
SVKRAGAAKLILFNSHGGQMALMDIVCRDIRIELGMLAVSCSWFRIAPVEDLFSRAEI
DHGIHGGDIETSMMLAIAPERVAMDKAENFVPLTVAIEKSGSMLTAEGAVGFGWQAQD
LHPAGVCGNASNATAQKGQIVLDRAADGLVSLIAATQAFDLSQLTSQTRFSNLCRARR
IP"
misc_feature complement(280589..281278)
/locus_tag="Avi_5280"
/note="Creatinine amidohydrolase; Region: Creatininase;
pfam02633"
/db_xref="CDD:202323"
gene complement(281341..282822)
/locus_tag="Avi_5281"
/db_xref="GeneID:7381399"
CDS complement(281341..282822)
/locus_tag="Avi_5281"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002547148.1"
/db_xref="GI:222106357"
/db_xref="GeneID:7381399"
/translation="MLDPLPDAVAALARLKDAARADLAALAYPAAPWLAPLSISAPSV
CDVAIVGGGQSAITIAAALKWDGVQQIRLFDSAPAGSEGPWTTFARMEELRTPKTAVG
NEFNVANLSVRRWFETRYGIEAWQTLGRIPRTDWKAYLDWYAEVFDIAITNETRVTDV
SPEGDLMAVTTLRQGHVERHLARAVVLATGFDGAGAWRVPRFISDALPSQRYDHTNGQ
VDFKRLKGKRIGILGHGASAFDNAVTALNSGAASVDLCFRRKQLPRTNPHRALEAPPL
LSGFGALSDQTRWQIARFFRSTDQPPPVRAFETAMALPGFTLRPATPWLEVCEKDGAV
SVKTPDGVLVFDHLLLATGMDVDLSARPELKTLAPRIAVWGEHFTPSAGEEDARLSQL
PYLDPYYAFLPKVPEDGWVSRVFAFNSASFVSHGPHSTSISGHRYALPRVVRGIERRL
LLDQENAILPGLEAYSSQDLPVSDDFEAVIAARNAARMMEKAS"
misc_feature complement(281518..282702)
/locus_tag="Avi_5281"
/note="Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism]; Region: TrkA;
COG2072"
/db_xref="CDD:32255"
misc_feature complement(282253..282681)
/locus_tag="Avi_5281"
/note="FAD-NAD(P)-binding; Region: NAD_binding_9;
pfam13454"
/db_xref="CDD:205632"
gene complement(282815..283612)
/locus_tag="Avi_5282"
/db_xref="GeneID:7381400"
CDS complement(282815..283612)
/locus_tag="Avi_5282"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_002547149.1"
/db_xref="GI:222106358"
/db_xref="GeneID:7381400"
/translation="MNRRITLTLGLAVGFFYLPIIVLALFSFNASSLMAFPLSGFTLS
WYKDLFSNTTFINGFLTSFLISQPVGILAALIGLCAALALASPRLAFRPVFIFLIVLP
FLVPKTVLSIAQAMLMNWIGLGRGAAALIAAQTLIAIPFATTIIAATVIRLDKRLEDA
ARDLGATPWQSFRRIVLPQLKGAIGAAYSIGVILSLADLTISMFLAGRTQPLSLIIAS
QFRRELKPDLNAMQVVVLLLTAVIVIVSELYRRNRHKHSISGPSDHA"
misc_feature complement(282920..283588)
/locus_tag="Avi_5282"
/note="ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism]; Region: PotC; COG1177"
/db_xref="CDD:31370"
misc_feature complement(282920..283351)
/locus_tag="Avi_5282"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(282920..282922,282929..282934,
282962..282967,283004..283009,283013..283024,
283043..283045,283052..283057,283097..283099,
283148..283150,283157..283162,283172..283174,
283178..283183,283190..283192,283196..283198,
283202..283207,283280..283282,283286..283291,
283298..283327,283331..283342))
/locus_tag="Avi_5282"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(283010..283012,283013..283024,
283280..283324))
/locus_tag="Avi_5282"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(282932..282934,282962..282964,
282971..282973,283007..283009,283220..283222,
283280..283282))
/locus_tag="Avi_5282"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(283076..283078,283088..283093,
283109..283147))
/locus_tag="Avi_5282"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(283609..284487)
/gene="potB"
/locus_tag="Avi_5283"
/db_xref="GeneID:7381401"
CDS complement(283609..284487)
/gene="potB"
/locus_tag="Avi_5283"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002547150.1"
/db_xref="GI:222106359"
/db_xref="GeneID:7381401"
/translation="MTLVLSRAHLALPVSMLLVLGCLLPLLLLLAFSLFTVDLDAFVM
VPDLSLHSWGQMMSNPVFALLIGKVVLSGLATAFLAAILGYPIALSIARLPTAWKGIA
QIVLLTPLYTGEIVRIYAWRVVLGSEGLVNAVLKGLGLVDQPVKFLLFSPFTTHLVLL
YNCLPFMVLPIWISAELIDRRLIEAARDLGARPFDAFTRVIFPLTVPGLAVGLLAVFA
LAAGDMLTPSMLGGTSGATPMAMIDNLFGTAFDWPLASALALSLLIALFATASAMAWL
LLRLKGARAVLQGGLK"
misc_feature complement(283729..284382)
/gene="potB"
/locus_tag="Avi_5283"
/note="ABC-type spermidine/putrescine transport system,
permease component I [Amino acid transport and
metabolism]; Region: PotB; COG1176"
/db_xref="CDD:31369"
misc_feature complement(<283879..>284295)
/gene="potB"
/locus_tag="Avi_5283"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cl00427"
/db_xref="CDD:211439"
misc_feature complement(order(283897..283899,283948..283950,
283957..283962,283972..283974,283978..283983,
283990..283992,283996..283998,284002..284007,
284122..284124,284128..284133,284140..284169,
284173..284184,284212..284214,284227..284232,
284239..284244))
/gene="potB"
/locus_tag="Avi_5283"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(284122..284166)
/gene="potB"
/locus_tag="Avi_5283"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(283888..283893,283909..283947))
/gene="potB"
/locus_tag="Avi_5283"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(284484..285590)
/gene="potG"
/locus_tag="Avi_5284"
/db_xref="GeneID:7381402"
CDS complement(284484..285590)
/gene="potG"
/locus_tag="Avi_5284"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(putrescine)"
/protein_id="YP_002547151.1"
/db_xref="GI:222106360"
/db_xref="GeneID:7381402"
/translation="MTQAWDTTATDKNVGTGLPMLLSARGLVKSYGRNRAVDGVDLDI
PERAFTTFLGPSGCGKTTILRMIGGFETPDAGSLVLDGRSLTGVPPERRPVNTVFQNY
ALFPHLTVFENVAFSLTLRRGAQDPAPRVKRALDAVHMGEFTSRYPHQLSGGQQQRVA
VARAIIAEPHLLLLDEPLSALDRKMRGHLQIELKDLQRRLGIAFVYVTHDQEEAFALS
DIVVVMNKGRIAQKADPVTLYARPADTFVADFIGSASLVEGEVLALDTETATIGTPLG
TITAPAIHGLAKGERAALVIRPEHLRLGNADGHGLVLSAKVRHVVFKGDRYLIEADIS
GVTVRLMADRPAEPGSTIAMALDTASCFITRLAS"
misc_feature complement(284502..285536)
/gene="potG"
/locus_tag="Avi_5284"
/note="ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism];
Region: PotA; COG3842"
/db_xref="CDD:33633"
misc_feature complement(284835..285527)
/gene="potG"
/locus_tag="Avi_5284"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(285408..285431)
/gene="potG"
/locus_tag="Avi_5284"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(284964..284966,285063..285068,
285291..285293,285405..285413,285417..285422))
/gene="potG"
/locus_tag="Avi_5284"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(285291..285302)
/gene="potG"
/locus_tag="Avi_5284"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(285111..285140)
/gene="potG"
/locus_tag="Avi_5284"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(285063..285080)
/gene="potG"
/locus_tag="Avi_5284"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(285045..285056)
/gene="potG"
/locus_tag="Avi_5284"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(284958..284978)
/gene="potG"
/locus_tag="Avi_5284"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature complement(284502..284711)
/gene="potG"
/locus_tag="Avi_5284"
/note="TOBE domain; Region: TOBE_2; pfam08402"
/db_xref="CDD:203932"
gene complement(285594..286676)
/gene="potF"
/locus_tag="Avi_5285"
/db_xref="GeneID:7380653"
CDS complement(285594..286676)
/gene="potF"
/locus_tag="Avi_5285"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(putrescine)"
/protein_id="YP_002547152.1"
/db_xref="GI:222106361"
/db_xref="GeneID:7380653"
/translation="MKRTGITRRDVLAGMAAGAAAGVVSNAGIARAAVSDMVWATWDS
NGHPEYVAAFEKETGVKVKLSYLSSEDAQFAALKTGAAADWDMINPSLNGSWRYIKAG
LLKELDLSKIPNASLMYDVFKSTPKVMDEAGKTFAIPYLWGLNPIVYRKDKFDKEPDY
TTLFDAKYSGQLAMRDYALESIAIAGLVAGVPRDKVFVMEAKELAEAKKLLITQKPLL
RTYWQTIGDLTNLFATGEVSCAFSWRVPYDELQAKLPMGMAKPKAGVMGWCDCFGMPA
NLSPEKTEIGYKFINYLLGPSYSTDVARIGHYATTSSVIRDKLSHEEQATIFVDDMDV
MKSFMWPVAPPNYSDWLKIWNEVKAS"
misc_feature complement(285600..286586)
/gene="potF"
/locus_tag="Avi_5285"
/note="Spermidine/putrescine-binding periplasmic protein
[Amino acid transport and metabolism]; Region: PotD;
COG0687"
/db_xref="CDD:31031"
misc_feature complement(285789..286535)
/gene="potF"
/locus_tag="Avi_5285"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:201851"
gene complement(286789..287790)
/locus_tag="Avi_5286"
/db_xref="GeneID:7380654"
CDS complement(286789..287790)
/locus_tag="Avi_5286"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002547153.1"
/db_xref="GI:222106362"
/db_xref="GeneID:7380654"
/translation="MSEQAYANLDIRLMRTLRLLLTECSVSRTADLLGQAQPTVSLSL
KRLRDIFQDPLLVRSGSALVPTERGLALRSAMNDILGRIDTHLISPTAFDPAVSVRHF
RIVASNCLGTVFMPQLIGAITDMAPGISIDASPMPSQDDLLSGLSEGRIDAVIGNWPH
PPEHLRIAPMLKTDIVCMVRSTHRFARRGRDRIRLDEYLEESHLSPTSERDAQFSPID
GRLRDLGVKRHIRATVPEYSIAPYVLARSDLVFTTGRHFAEQVAQTFPFAVLDAPVEL
GQMHFYTLWHDRKHHAPDQAWLRRMIKHASAEMQTLDRPGPLPLPPMHHMQPSWQPS"
misc_feature complement(286861..287718)
/locus_tag="Avi_5286"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(287584..>287718)
/locus_tag="Avi_5286"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(286876..287490)
/locus_tag="Avi_5286"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
similar to DntR, which is involved in the catabolism of
dinitrotoluene; contains the type 2 periplasmic binding
fold; Region: PBP2_DntR_like_4; cd08463"
/db_xref="CDD:176152"
misc_feature complement(order(286948..286950,287149..287151,
287272..287274,287449..287451,287461..287466,
287470..287472))
/locus_tag="Avi_5286"
/note="putative substrate binding pocket [chemical
binding]; other site"
/db_xref="CDD:176152"
misc_feature complement(order(287011..287013,287053..287055,
287062..287067,287074..287079,287086..287100,
287185..287187,287386..287388,287392..287406,
287410..287415,287422..287427,287431..287436,
287443..287448,287455..287460,287467..287469))
/locus_tag="Avi_5286"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176152"
gene complement(287951..290641)
/locus_tag="Avi_5287"
/db_xref="GeneID:7380655"
CDS complement(287951..290641)
/locus_tag="Avi_5287"
/codon_start=1
/transl_table=11
/product="two component response regulator"
/protein_id="YP_002547154.1"
/db_xref="GI:222106363"
/db_xref="GeneID:7380655"
/translation="MLKFFNLTLKSDRLSELNDFQGGPVQRTRLLNRRSVPPSASTGL
IDRPRLTRLSQLLSKHRLALVHAPAGSGKTTLLAQWHRSLSDAGFSTVWYSASEDDKD
PFNFAEGLLQALQQSIADNRDHLPSLDRADALQRLTALLTDQSIRQPLALFIDDYHLA
EGGDGGEAINTILASRLPSLTVVLASRNRPAIPVGRYRANGEMIDIAVEDLHFSEEET
EAFFRTASNVALTADESRQMHDHTEGWAVGLRLAALVTGRATGNFVAAAPSGSHRAFA
DYFLEEVIAGLPAEVCDFLAKTSLLETLNADLCNAVTGQRDGDRMLAFLEQSQLFVVE
LPGTQRWYKYHHLFQEFLQTRLYGDDRPAVEDIHARAAQWFIDNGSPVDAVRHAFLAR
QSKWAAELIETYCLYDYLSHGRFDTYSRWMQQLPREAREERPLLLFLHVWRSINMRRF
LQAEQTLQTIEAAASDPNSPVSLIAARTGLDISGRLHLMRALIGAYGGDFTVGSFHLS
QLAGKELDRLAFGQVDLDSIHSYFAFNLGKLDLAERLTWRANGVYDDMACHWGGIHSR
CIAAMSYLARALFQEARHVIVEALAIAEQNFGEHSYMVALPSALLGLIAYDDNDLEKA
ERLWRRAIPAEKATDVSGLCERILIATTGLVRLLDITGRVEEATALLVRASRRAYEAE
DFRLEFQLGIERADRAFRLNSPAEGRREWERLSLQLPEARNRFPSSAWQIWDPFRIVE
ARILRNAGQIDAAAEKLRTLAAGARQEGRILMARQAEALAKVIAPAHEAEETQPADLE
DDTMATRRILRDFISPVAASPNPGGGQRQEARLSLRGSLTELTQREDDVLQLMRWGLS
NSEIATRLDINLNTVKSHAKNIFAKLGVKSRTQAVLKTLE"
misc_feature complement(287963..290560)
/locus_tag="Avi_5287"
/note="ATP-dependent transcriptional regulator
[Transcription]; Region: MalT; COG2909"
/db_xref="CDD:32733"
misc_feature complement(290162..290494)
/locus_tag="Avi_5287"
/note="AAA ATPase domain; Region: AAA_16; pfam13191"
/db_xref="CDD:205372"
misc_feature complement(287963..288124)
/locus_tag="Avi_5287"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature complement(order(287981..287983,288014..288028,
288032..288037,288041..288046,288068..288076,
288113..288121))
/locus_tag="Avi_5287"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature complement(order(287966..287968,287975..287983,
288074..288076,288080..288082,288086..288088))
/locus_tag="Avi_5287"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 290717..292138
/gene="gatA"
/locus_tag="Avi_5288"
/db_xref="GeneID:7380656"
CDS 290717..292138
/gene="gatA"
/locus_tag="Avi_5288"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA amidotransferase subunit A"
/protein_id="YP_002547155.1"
/db_xref="GI:222106364"
/db_xref="GeneID:7380656"
/translation="MQLSEYRTYDATGLAELVAKGEVQPTELLETALAGVAATNPALN
AIVATFEDEARRFIKEELKDGPFKGVPFVLKDLTAHYAGQPTGAGWPPRASVTPQQDS
ELVRRFKKAGLVTFAKTAVPELAMDWTTRSRAHGVTNNPWNPGRTAGTSSGGTAAAVA
AGIVPMGHGNDGGGSIRVPSSVCGCFGMKPSRGRNPVAPAGSTWQGMLVEHALTRSVR
DSAALLDATAGPHRGQFFNSPAGGQFAAEVGRDPGKLRIAVSTRAPYGAETHADCKAA
VAETVKLLESLGHHCEPFDIDLPDDGWDAFETYILAEYATDMRLEEGVLGRKLTQGDF
PQMLWDMIEAGNRISAVGVNIATTRLHEVASAVSSTFKTFDLFLSPTLAQPPLPHEAF
PASTSMRGHYAFYLSWMPYTHIFNVNGSPAMSVPLVWNDEGLPIGVQFAAAPTGEGLL
FRLAAQLEAARPWSNRRPQISVA"
misc_feature 290744..292123
/gene="gatA"
/locus_tag="Avi_5288"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure and
biogenesis]; Region: GatA; COG0154"
/db_xref="CDD:30503"
misc_feature 290795..292066
/gene="gatA"
/locus_tag="Avi_5288"
/note="Amidase; Region: Amidase; pfam01425"
/db_xref="CDD:201788"
gene 292179..293732
/locus_tag="Avi_5289"
/db_xref="GeneID:7380657"
CDS 292179..293732
/locus_tag="Avi_5289"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_002547156.1"
/db_xref="GI:222106365"
/db_xref="GeneID:7380657"
/translation="MNHKPDKSPLARSCAVAVALAAALTGFSASAAELTVARSVDADG
LDPQKASTTQSLQITNLIFDTLLTMAKDGSVHPGLASAWTMAPDGKSYDFTIRDGIKC
HDGSTFDAAAAKASLDRALDPATVNPNLSAWGPITKSSVEGKVLKVTLSEPYGPFTSF
LTSIQAGFICPSSASAKEFKPIGTGPFKFVNWTRNDSIQLEANADYQNANPLIENPGK
PHIDKLTFKVIPEAVARMAALRSGEVDMVEPSLEEAADLKADSNFKVYAADLSGQQML
AAFTWKIKPLDNPDIRKAIGMAMNRDAYASIAFEGLVNTANCPVAPNLFSTDEALCAS
WGVKYDPEAAKALMAKAGYTPEKPLKVKLLVHKLPGWDQMHQIMQQDLAAIGVQAEIE
TREVAAYFDYMKGVNERTDGEPAVWTMGMSGVDPDYLTFLWKRPGFVNMGINADLDGM
LDEQRKLSGDARAAKIHDIEKYLMENAYAIPLLSPGWGWLMASTSKVDGFKMGFMVSL
LFNDVSVKP"
misc_feature 292275..293678
/locus_tag="Avi_5289"
/note="The substrate-binding domain of an ABC-type
nickel/oligopeptide-like import system contains the type 2
periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like; cd00995"
/db_xref="CDD:173853"
misc_feature 292401..293477
/locus_tag="Avi_5289"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene 293788..294711
/locus_tag="Avi_5290"
/db_xref="GeneID:7380658"
CDS 293788..294711
/locus_tag="Avi_5290"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547157.1"
/db_xref="GI:222106366"
/db_xref="GeneID:7380658"
/translation="MLVLIFKRLLIALATIVSVIILSGILIHIVPGDPVTAMMAQSVT
ASPQAMAQMRAKLGLDLPVWQQVGLYTWHVFQGDLGMTIRGNEPVARLLLQRLPNTFA
LAVSGLGVALAIGIPLGFLAAIHRGKLTDTAVMVIAVLGVSIPGFWFGLIMIQVFSLK
LGWFPVAGSGFRNIILPALTLGLTYCALVARMTRSALVEVLAEDYIRTARARGLREYQ
VLLVHALKPALISIVTVVGLVFAYLLGGQVIIENVFSWNGIGRLAVQAMLERDYPMIQ
GFIVVFASSVVIVSMLIDILYGFLDPRMRQR"
misc_feature 293788..294708
/locus_tag="Avi_5290"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 294076..294552
/locus_tag="Avi_5290"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(294124..294129,294136..294141,294154..294156,
294187..294198,294202..294231,294238..294243,
294247..294249,294337..294342,294346..294348,
294352..294354,294361..294366,294370..294372,
294382..294387,294394..294396,294445..294447,
294487..294492,294499..294501,294520..294531,
294538..294543)
/locus_tag="Avi_5290"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(294205..294249,294520..294537)
/locus_tag="Avi_5290"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(294247..294249,294322..294324,294538..294540)
/locus_tag="Avi_5290"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(294397..294435,294451..294456,294466..294468)
/locus_tag="Avi_5290"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 294708..295556
/gene="dppC"
/locus_tag="Avi_5291"
/db_xref="GeneID:7380659"
CDS 294708..295556
/gene="dppC"
/locus_tag="Avi_5291"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547158.1"
/db_xref="GI:222106367"
/db_xref="GeneID:7380659"
/translation="MTSIAKRSMFSLRLPLSVSIGLALALVIVLLSLLSSYIAPFDPM
RMASGPRLAAPSAAHLFGTDEFGRDLFSRVLLGGRLSLGIGLSAVVSGLVIGGLIGLI
AAFGGRVVEALLLRLIDVLYSFPDTLIALALVAFLGPGIENATLAIAISLVPFYARVA
YGLAAAERAKPYIEAARLAGTRSARLVRVHVMPNIVQSLIVMATLGFSSAILSAAGLS
FLGLGVQPPSPEWGAILASGRNYITKAPWILIFPGLAICLTVLSFNLIGDSLRDLIDP
RRKARP"
misc_feature 294825..295532
/gene="dppC"
/locus_tag="Avi_5291"
/note="nickel ABC transporter, permease subunit NikC;
Region: nickel_nikC; TIGR02790"
/db_xref="CDD:131837"
misc_feature 295029..>295319
/gene="dppC"
/locus_tag="Avi_5291"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(295047..295058,295062..295091,295098..295103,
295107..295109,295158..295163,295167..295169,
295173..295175,295182..295187,295191..295193,
295203..295208,295215..295217,295266..295268,
295308..295313)
/gene="dppC"
/locus_tag="Avi_5291"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature 295065..295109
/gene="dppC"
/locus_tag="Avi_5291"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(295218..295256,295272..295277,295287..295289)
/gene="dppC"
/locus_tag="Avi_5291"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 295553..296386
/gene="moaD"
/locus_tag="Avi_5292"
/db_xref="GeneID:7380660"
CDS 295553..296386
/gene="moaD"
/locus_tag="Avi_5292"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002547159.1"
/db_xref="GI:222106368"
/db_xref="GeneID:7380660"
/translation="MTEPYLRVRDLKVAFPTRQGSFAAVDGVGFDLARGEILALVGES
GSGKSMTSLSIMRLLPEAGTMSGTIQIDGQNIAGLQRRDMEDVRGAKIGMIFQEPMTS
LNPVLTIGRQMSEGLIRHKGMARRLALEHAIAALEDVRIPDPRRILGQYPHQLSGGMR
QRVMIAAALTLKPGVLIADEPTTALDVTVQAQVLDLLVDLKLRHRSGILLITHDIGVV
AETADRVAVMRGGRIVETGSVAQILSAPQHDYTKALLASHLTVERAMQQRRDKTKANA
K"
misc_feature 295568..296263
/gene="moaD"
/locus_tag="Avi_5292"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 295622..296329
/gene="moaD"
/locus_tag="Avi_5292"
/note="nickel import ATP-binding protein NikD; Region:
nickel_nikD; TIGR02770"
/db_xref="CDD:131817"
misc_feature 295676..295699
/gene="moaD"
/locus_tag="Avi_5292"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(295685..295690,295694..295702,295841..295843,
296087..296092,296189..296191)
/gene="moaD"
/locus_tag="Avi_5292"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 295832..295843
/gene="moaD"
/locus_tag="Avi_5292"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 296015..296044
/gene="moaD"
/locus_tag="Avi_5292"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 296075..296092
/gene="moaD"
/locus_tag="Avi_5292"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 296099..296110
/gene="moaD"
/locus_tag="Avi_5292"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 296177..296197
/gene="moaD"
/locus_tag="Avi_5292"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 296252..>296326
/gene="moaD"
/locus_tag="Avi_5292"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene 296383..297267
/gene="moaD"
/locus_tag="Avi_5293"
/db_xref="GeneID:7380661"
CDS 296383..297267
/gene="moaD"
/locus_tag="Avi_5293"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002547160.1"
/db_xref="GI:222106369"
/db_xref="GeneID:7380661"
/translation="MTTEPILALETIRKVFSANGREVRALNGVSLSLGRGETLGVIGE
SGSGKSTLGRIAVGLETADKGTIRIGGTDIAGLSAPLRREAFRHCQMIFQDPYSSLNP
RLKIGRQIGEGIYATGVANWKEIGESVADLLEKVGLKRDYADRYPHEFSGGQRQRIAI
ARALAPGPQVVIADEPVSALDVSIQAQILDLLADLQKENFLSYLFISHDMAVVAHLCD
RVAVMHHGRIVEYGPVEAIVEHARHPYTKSLLEAVPRLGRRRSGERRVPVALPTHGDD
DPYEAVSPGHWVLAHSPM"
misc_feature 296395..297144
/gene="moaD"
/locus_tag="Avi_5293"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppF; COG1124"
/db_xref="CDD:31321"
misc_feature 296398..297078
/gene="moaD"
/locus_tag="Avi_5293"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 296509..296532
/gene="moaD"
/locus_tag="Avi_5293"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(296518..296523,296527..296535,296662..296664,
296902..296907,297004..297006)
/gene="moaD"
/locus_tag="Avi_5293"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 296653..296664
/gene="moaD"
/locus_tag="Avi_5293"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 296830..296859
/gene="moaD"
/locus_tag="Avi_5293"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 296890..296907
/gene="moaD"
/locus_tag="Avi_5293"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 296914..296925
/gene="moaD"
/locus_tag="Avi_5293"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 296992..297012
/gene="moaD"
/locus_tag="Avi_5293"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 297067..>297144
/gene="moaD"
/locus_tag="Avi_5293"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene 297354..299003
/locus_tag="Avi_5294"
/db_xref="GeneID:7380662"
CDS 297354..299003
/locus_tag="Avi_5294"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(peptide)"
/protein_id="YP_002547161.1"
/db_xref="GI:222106370"
/db_xref="GeneID:7380662"
/translation="MPKSVQDDAIEAGTLLSVQGLTVGLPPGMDRRYAVEDMSFDLKA
GEILCIIGESGSGKSVTANATMGLLAQSLHIVSGSIMLEGQELVGADAATLRALRGRI
VSMIFQDPLSALNPLMTVGDQIAEVMEAHGIGTQQERRARVLDLITEVGLPDPELMQH
QYPFRLSGGQRQRVMIAMALALEPKVLIADEPTTALDVTTQAQILELIASIQRRKQMS
VMFITHDFGVVAEIADRVIVMEKGHVVEQGSASVVLKSPDHPYTQRLIAAVPRMRASD
RENEADTPVVLEARNLCKTYGTGSGFLSKGRVIKAVDDVSFTIAKGRTLGIVGESGSG
KSSLGRLLVKLMNSDSGEILFGGRDIAPLSEEAFRSMRPYIQMIFQDPFASLNPRQTI
GRILTVGPVAQATPIHEARTRAMRLLERVGLDAGAYDRYPHEFSGGQRQRIGIARALM
FNPMLIVADEAVSALDVSIQAQILQLLTEVQQEMKLAMAFITHDLRVASQICDEIAVM
YKGRIVEYGPPSQIFRNPTHDYTRQLVSAIPGTEWEPAVMV"
misc_feature 297387..298973
/locus_tag="Avi_5294"
/note="ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only]; Region: COG1123"
/db_xref="CDD:31320"
misc_feature 297396..298097
/locus_tag="Avi_5294"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 297507..297530
/locus_tag="Avi_5294"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(297516..297521,297525..297533,297675..297677,
297921..297926,298023..298025)
/locus_tag="Avi_5294"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 297666..297677
/locus_tag="Avi_5294"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 297849..297878
/locus_tag="Avi_5294"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 297909..297926
/locus_tag="Avi_5294"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 297933..297944
/locus_tag="Avi_5294"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 298011..298031
/locus_tag="Avi_5294"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 298086..>298235
/locus_tag="Avi_5294"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:203916"
misc_feature 298209..298904
/locus_tag="Avi_5294"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 298338..298361
/locus_tag="Avi_5294"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(298347..298352,298356..298364,298491..298493,
298728..298733,298830..298832)
/locus_tag="Avi_5294"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 298482..298493
/locus_tag="Avi_5294"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 298656..298685
/locus_tag="Avi_5294"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 298716..298733
/locus_tag="Avi_5294"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 298740..298751
/locus_tag="Avi_5294"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 298818..298838
/locus_tag="Avi_5294"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 298893..>298970
/locus_tag="Avi_5294"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene 299389..299838
/locus_tag="Avi_5296"
/db_xref="GeneID:7380663"
CDS 299389..299838
/locus_tag="Avi_5296"
/codon_start=1
/transl_table=11
/product="transcriptional regulator MarR family"
/protein_id="YP_002547162.1"
/db_xref="GI:222106371"
/db_xref="GeneID:7380663"
/translation="MAAVELDVLENVLSYYIRTINMAVSRDLDQKLGKLEVAKGTGKI
TTLLLVDSHPGIRSSAIAQLILKDRSAMVRLVDQMEEQELLRREVDDDDNRAQGLFIT
PKGAALAKRVRPLVVKQSRDFFPDITDEEHQMLISVLGRTYRRIIGL"
misc_feature 299527..299673
/locus_tag="Avi_5296"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
gene 299916..301247
/locus_tag="Avi_5297"
/db_xref="GeneID:7380664"
CDS 299916..301247
/locus_tag="Avi_5297"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002547163.1"
/db_xref="GI:222106372"
/db_xref="GeneID:7380664"
/translation="MPGPYVVPVHGDAELPSHVDVVVIGGGIIGTSTALELADQGLRV
ALCEKGGIGHEQSSRNWGWVRISRRDPREVPLMAESLRIWTDLNRRTGRETGFKRSGI
VFTCATEKEFAEHERWNSNLDGYQIESRMLSAKEFREKYPGSDMNIAGALYTAGDCRA
EPQKAAPAIAEAARDRGAFILTECAVRGLQLSGGKVSGVVTERGEIACQSVVLAGGAW
SNLFCGNNGLDLPQLKVMNSVLRTKPLEGGPEEAIWSNGFAIRKRSDGGYTIANGFQN
IVDIVPASFRYARNFLPALRHEWRSLDLRLTGRFFDEWRIPRRWSLDEASPFEYNRVL
DPVPSKAMTDGALAQLKKAFPIFEKAEISQRWAGMIDVTPDAIPVIDAIDAIPGFHVA
TGFSGHGFGIGPAAGRLMADIVTGRNPIVDRKDFRFSRFSDGSKIELISGF"
misc_feature 300009..300809
/locus_tag="Avi_5297"
/note="FAD dependent oxidoreductase; Region: DAO;
pfam01266"
/db_xref="CDD:201696"
misc_feature 300009..>300344
/locus_tag="Avi_5297"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature <301086..301223
/locus_tag="Avi_5297"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene 301451..303121
/locus_tag="Avi_5299"
/db_xref="GeneID:7380665"
CDS 301451..303121
/locus_tag="Avi_5299"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(oligopeptide)"
/protein_id="YP_002547164.1"
/db_xref="GI:222106373"
/db_xref="GeneID:7380665"
/translation="MSDKERNSIPHPTRRQTLGLMALGASGVLLSGLPISEIRAASAA
TKSIKGQLTVGFSQEPTVFNPHMPHIEVDEGIHFSIFDTLFSVDAAGKFVPGLAVDVP
SVENGGISADGLKWKIKLRDGVTWHDGKPFTAEDVKATLELLVDANFRSWRKTGHEFV
RDLTVVSPTEITWRMDKPFAPYPSILASTFITPKHLLSASADPNNAPFNTAPVGTGPF
KWAERVAGDHILLAANPDYFGDGPYVEKLIYKYVPDLNVMYTQFKTGDIDVVGLQWIT
PDHYEEAKGLDGKVVNVVPGSTVESFTFNMERPQFKEAAVREALYAAIDKQSIIEALY
YGLPTPTESYVPQQSFYFNPDLPKHEYDIAKAKKLLDDAGWVAGSDGIRAKGGVKLSF
TCSTTAGNHIREQVQQFLQQSFKDIGVEMTISNLPPAVMWGDYWTLSKFDAVIVGLDF
LTGSDPDTSNFFRSTAIPAKGGSGQNTWQFSNQQVDELLTKGGELFVPEERKAVYLKI
QEIMRKELPLLPMFQYATVRGHKQGVENVTPNVNVRIDTWNVATWRWA"
misc_feature 301601..303061
/locus_tag="Avi_5299"
/note="The substrate-binding component of ABC-type
thermophilic oligopeptide-binding protein Hb8-like import
systems, contains the type 2 periplasmic binding fold;
Region: PBP2_thermophilic_Hb8_like; cd08513"
/db_xref="CDD:173878"
misc_feature order(301679..301681,302657..302659,302744..302746,
302786..302791,302798..302800,302822..302824)
/locus_tag="Avi_5299"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:173878"
misc_feature 301724..302869
/locus_tag="Avi_5299"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
misc_feature order(302216..302218,302228..302230,302240..302242,
302441..302446,302663..302665,302672..302677,
302684..302686)
/locus_tag="Avi_5299"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173878"
gene 303297..304247
/locus_tag="Avi_5300"
/db_xref="GeneID:7380666"
CDS 303297..304247
/locus_tag="Avi_5300"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547165.1"
/db_xref="GI:222106374"
/db_xref="GeneID:7380666"
/translation="MLSYLFNRLMQSLVLLLLVSIIGFAILNLAPGGPLSQYALTPGM
TREAMDRIAHQMGLDRPLPIQYLDWVWRLLQGDWGKSYRDQQPVLSIISSHFFATLLL
MGTSTVIAVILGVWIGIKGATRRYSLFDYAATVGAMVALSIPTFWFGLVAIYVFALKL
KWLPAGNMYTIGNGSFSDYAIHLVMPSLVLALVDIAVWSRYMRSATLEVINQDFVRTA
KAKGVSPRRVLMKHVVGNALLPMITLAGMQLPIVLGGALVTETVFTWPGMGRLFLDSL
GYHDYPVVMGLLMFTAVFALIGSLVADLLVAFVDPRIRLG"
misc_feature 303297..304244
/locus_tag="Avi_5300"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 303582..304196
/locus_tag="Avi_5300"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(303630..303635,303642..303647,303663..303665,
303693..303704,303708..303737,303744..303749,
303753..303755,303873..303878,303882..303884,
303888..303890,303897..303902,303906..303908,
303918..303923,303930..303932,303981..303983,
304023..304028,304035..304037,304056..304067,
304074..304079,304104..304109,304146..304151,
304158..304163,304167..304172,304179..304184,
304191..304196)
/locus_tag="Avi_5300"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(303711..303755,304056..304073)
/locus_tag="Avi_5300"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(303753..303755,303858..303860,304074..304076,
304098..304100,304107..304109,304146..304148)
/locus_tag="Avi_5300"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(303933..303971,303987..303992,304002..304004)
/locus_tag="Avi_5300"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 304280..305170
/locus_tag="Avi_5301"
/db_xref="GeneID:7380667"
CDS 304280..305170
/locus_tag="Avi_5301"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547166.1"
/db_xref="GI:222106375"
/db_xref="GeneID:7380667"
/translation="MSIAIPSPVPPARPSRWWRSRVARRFFRHKLALVGLVMITLLVF
ACVAGPSLLPYDELFIDLRARFAPPLTGAHIFGTDPLGRDIAARLFNAGRISLLIGFF
AMLMSTAIGAVVGVVAGYRGGLIGTVLMRFVDAFLSFPSIFLLLALAAFIRPSPLMIT
VIIAVTCWMEVARIVEAEVRSLRERDFVMAARMLGLRNSHIMIHELLPNAVGPIIVAA
TLTVARAILLEAYVSFLGYGIQPPLPSWGNMLNSAQQYLGSAPWLAIVPGVAITLAVT
SFNFIGDGLRDALDARSDNP"
misc_feature <304364..304486
/locus_tag="Avi_5301"
/note="N-terminal TM domain of oligopeptide transport
permease C; Region: OppC_N; pfam12911"
/db_xref="CDD:205142"
misc_feature 304367..305158
/locus_tag="Avi_5301"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:31366"
misc_feature <304739..305104
/locus_tag="Avi_5301"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(304760..304762,304976..304978,305015..305017,
305024..305026,305054..305056)
/locus_tag="Avi_5301"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(304775..304780,304784..304786,304790..304792,
304799..304804,304808..304810,304820..304825,
304832..304834,304883..304885,304925..304930,
304937..304939,304958..304969,304976..304981,
305021..305026,305054..305059,305066..305071,
305075..305080,305087..305092,305099..305104)
/locus_tag="Avi_5301"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(304835..304873,304889..304894,304904..304906)
/locus_tag="Avi_5301"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 305336..306475
/gene="xylR"
/locus_tag="Avi_5303"
/db_xref="GeneID:7380668"
CDS 305336..306475
/gene="xylR"
/locus_tag="Avi_5303"
/codon_start=1
/transl_table=11
/product="transcriptional regulator ROK family"
/protein_id="YP_002547167.1"
/db_xref="GI:222106376"
/db_xref="GeneID:7380668"
/translation="MALRGTNQESGRPYNRRIVLESIRLHGPTTRGDIAERVGLTVQT
VSTIVRELEDQGLLLSVREKPKGRGIPPSALTINPEGGHAVGIHLTPLGIEAALVNLR
GEVVESRQRSAPNAMPDEAFALIGEMVADLKASSRRGRLLGAGLALPGPFDVDSMSFV
GPTTMAGWKNVYIRQRLADATGLPAFMENDMAAAALGEQLYGLGQQFSDYFYLFFSVG
LGGAMMHDGVVMRGAWGNAGEIGHIAAVPDGELCHCGNCGCLERYLSLDAFKRSGLSE
EDWVDVIAPIFRSAIRTIENLFDPETIVLGGLAPQSLIERLATLGEGLTNSISARTNR
TVPRVVVASDCQRSALRGAAALAVFGVLSPRFGQMFETSEKGIAV"
misc_feature 305375..305548
/gene="xylR"
/locus_tag="Avi_5303"
/note="helix_turn_helix, cAMP Regulatory protein
C-terminus; DNA binding domain of prokaryotic regulatory
proteins belonging to the catabolite activator protein
family; Region: HTH_CRP; cd00092"
/db_xref="CDD:28976"
misc_feature order(305417..305419,305423..305431,305456..305458)
/gene="xylR"
/locus_tag="Avi_5303"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:28976"
misc_feature 305456..305476
/gene="xylR"
/locus_tag="Avi_5303"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28976"
misc_feature order(305459..305464,305474..305476)
/gene="xylR"
/locus_tag="Avi_5303"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28976"
misc_feature 305459..305464
/gene="xylR"
/locus_tag="Avi_5303"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:28976"
misc_feature 305564..306409
/gene="xylR"
/locus_tag="Avi_5303"
/note="Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism];
Region: NagC; COG1940"
/db_xref="CDD:32123"
misc_feature 305615..306142
/gene="xylR"
/locus_tag="Avi_5303"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 306472..307239
/locus_tag="Avi_5304"
/db_xref="GeneID:7380669"
CDS 306472..307239
/locus_tag="Avi_5304"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002547168.1"
/db_xref="GI:222106377"
/db_xref="GeneID:7380669"
/translation="MTENLLVLDDIRMNFGAIEALKGISFSIGKGEVVALLGDNGAGK
STLVKIISGGLQPTSGRMLFEGEPFQAKTPAEAKGAGIETVYQDLSLCTNVDVVGNFF
MGRELTRKVAGIPFLDERAMEDITAKALASAGTRIPSMRTKVEHLSGGQRQAIELNRF
VHWGGKLVLLDEPFAALGVEQTRRGLEMIRHVASQGIGVVIITHIMQQAFQVADRIVV
IRHGVVAGDVERSQTSPDAVIEMITGQTLAGAGPVSQ"
misc_feature 306475..307191
/locus_tag="Avi_5304"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivG; COG0411"
/db_xref="CDD:30760"
misc_feature 306487..307152
/locus_tag="Avi_5304"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature 306583..306606
/locus_tag="Avi_5304"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature order(306592..306597,306601..306609,306730..306732,
306982..306987,307081..307083)
/locus_tag="Avi_5304"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72975"
misc_feature 306721..306732
/locus_tag="Avi_5304"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature order(306736..306741,306820..306843)
/locus_tag="Avi_5304"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature 306970..306987
/locus_tag="Avi_5304"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature 306994..307005
/locus_tag="Avi_5304"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature 307069..307089
/locus_tag="Avi_5304"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
gene 307276..308316
/locus_tag="Avi_5305"
/db_xref="GeneID:7380670"
CDS 307276..308316
/locus_tag="Avi_5305"
/codon_start=1
/transl_table=11
/product="ABC transporter binding protein"
/protein_id="YP_002547169.1"
/db_xref="GI:222106378"
/db_xref="GeneID:7380670"
/translation="MKRLLTVLLGILMLNLAAWTSAAAQTKGMVYYLVPTLLDEFQTG
SVNALSMFLGQVGYEMKTLNADNKTDAQQSQMNDVIALKPAAIILAAVDFNALKPSIE
AARAAGIPVVEFDRQITSTPSDFTSVAGTVEIGHIAGDHAISLLKGKNGDVKGKILQV
PGDPGDPYTLDIQKGFEEKIKAFPGVKIISVPAVQWEASAAGTIVSDQMLANPDIDLI
FLHAAHLSVAAVASLEAAGKKPGDVMLMSSNGAPVGLDLIRKGWLNVEVEQPLYAQAA
AIAMFMDKVVGKKPIKAGDYDVLGLKSVVTMETWGPNIKIPGSAITKENVDNPSFWGN
LKPPTAAIKSVE"
misc_feature 307276..308283
/locus_tag="Avi_5305"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
RbsB; COG1879"
/db_xref="CDD:32063"
misc_feature 307363..308151
/locus_tag="Avi_5305"
/note="Periplasmic sugar-binding domain of active
transport systems that are members of the type I
periplasmic binding protein (PBP1) superfamily; Region:
PBP1_ABC_sugar_binding_like; cd01536"
/db_xref="CDD:107249"
misc_feature order(307396..307398,307618..307620,307789..307791,
308020..308022,308080..308082)
/locus_tag="Avi_5305"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107249"
gene 308369..309373
/gene="rbsC"
/locus_tag="Avi_5307"
/db_xref="GeneID:7380671"
CDS 308369..309373
/gene="rbsC"
/locus_tag="Avi_5307"
/codon_start=1
/transl_table=11
/product="ribose ABC transporter permease"
/protein_id="YP_002547170.1"
/db_xref="GI:222106379"
/db_xref="GeneID:7380671"
/translation="MRRMTSHTRKTLEFVLDNLVWFMLILVLAMFSVLIPNYFQIGIF
TNIIEASSVLGVMSIGLALVIITGHMDLSVESVAALSAMAVGILFCSAGIGLGIKLSP
EWLMIPVSLLVACAIGGLIGLINGVLVVKLKMSAFIITLASFIWVRGIVLAVSGGRSA
QDLAPAIRWFAIERFIGIPLTAWIAIACFLIFSVMMAKTPFGRHLVMIGGNETATFRA
GIRVTRNLIIAFVMAGAIAGLAGWLLAVRTSGATANLGVGLLFNAFAAVVIGGVSLKG
GVGALPGVYAGVLLLSSINTAINLMGLPANYTQVIHGFLVLAAVLLDTFKQRLRQRLA
"
misc_feature 308519..309337
/gene="rbsC"
/locus_tag="Avi_5307"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 309005..309061
/gene="rbsC"
/locus_tag="Avi_5307"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 309370..310140
/locus_tag="Avi_5308"
/db_xref="GeneID:7380672"
CDS 309370..310140
/locus_tag="Avi_5308"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="YP_002547171.1"
/db_xref="GI:222106380"
/db_xref="GeneID:7380672"
/translation="MTDRLKDKVALVIGASRGIGKAIAVRFKEEGAKLVLADFNAEEG
KAAADELGIDFIRTDIASMQDAVAAVEFTVERHGRIDIIVQNAGIYPWQLIEHTSPDD
WDQVMAVNLRGCFNAARAALAPMKTQGSGRILFTSSITGPHVTSPGHGHYAASKAGIN
GFIRSAALEFSSYGINVNGVEPGNIMTEAIQLHRSAAFIKNMEDAIPLARLGSPRDVA
NAFLFLASDDASYVTGTTIVVDGGQLLPEGADFRILPS"
misc_feature 309373..310110
/locus_tag="Avi_5308"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Reviewed; Region: PRK12826"
/db_xref="CDD:183775"
misc_feature 309397..310089
/locus_tag="Avi_5308"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(309409..309411,309415..309426,309481..309489,
309541..309549,309625..309633,309694..309696,
309775..309783,309823..309825,309835..309837,
309913..309924,309928..309933)
/locus_tag="Avi_5308"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature order(309697..309699,309781..309783,309823..309825,
309835..309837)
/locus_tag="Avi_5308"
/note="active site"
/db_xref="CDD:212491"
gene complement(310237..310734)
/locus_tag="Avi_5309"
/db_xref="GeneID:7380673"
CDS complement(310237..310734)
/locus_tag="Avi_5309"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator"
/protein_id="YP_002547172.1"
/db_xref="GI:222106381"
/db_xref="GeneID:7380673"
/translation="MPQAEGLFSDLISQWEEDFPGEDSSPIAIAMRLRHLYLLDQASL
EEVLVAFDIGIGEVDVLTHLRHQSPPYRLRPSDLAELCMVTTGAITGRITRLEDKGFV
ERVPSLSDKRTVYVQMTESGEKLLRETRVQVARSSHFLDGIRSLSAPERTRLDRLLAK
LIQVL"
misc_feature complement(310249..310635)
/locus_tag="Avi_5309"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
misc_feature complement(310282..310599)
/locus_tag="Avi_5309"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
gene 310912..311457
/locus_tag="Avi_5310"
/db_xref="GeneID:7380674"
CDS 310912..311457
/locus_tag="Avi_5310"
/codon_start=1
/transl_table=11
/product="flavoprotein oxidoreductase"
/protein_id="YP_002547173.1"
/db_xref="GI:222106382"
/db_xref="GeneID:7380674"
/translation="MVSSSAKLHDPEEGSAANFPDIDNLKIAFGQLPSGVVIVTSQGC
GGEMVGATVSSFASLSFTPPLVMLGLAQSSTTLSAILDHGHFAVHVVAEPQQDIAMRF
ASSRADKFSDIDFKLSPSGVPILSEFDTCFHCALERAQSAGDHQLLIGRIVDVSTVER
DTTPVAWFNRRFHICEPRALV"
misc_feature 310996..311427
/locus_tag="Avi_5310"
/note="Flavin reductase like domain; Region:
Flavin_Reduct; smart00903"
/db_xref="CDD:197971"
gene 311704..312987
/locus_tag="Avi_5311"
/db_xref="GeneID:7380675"
CDS 311704..312987
/locus_tag="Avi_5311"
/codon_start=1
/transl_table=11
/product="indole dioxygenase"
/protein_id="YP_002547174.1"
/db_xref="GI:222106383"
/db_xref="GeneID:7380675"
/translation="MEMNAKQFDYVLPNPPISPYSTEVGREIRAKAAALVPLLRKHAQ
EGEELGALAPESLKALSDIGAFKLTLPTDFGGHALGARDVVEIVTEFGRGDGAAGWMA
FVAGGLRNILAFPDQAVNEIFADGRDWVGPLAAGASIFATKVGSARRVEGGWMVSGSW
HFGSGCKHAKWIAVGVDYEVAPGHMGRAMAVLKAEQVKIIDNWHVMGMKATSSNSLTV
TEEQFVPDHRFMDMADFPVRMDGTRKRFQGFASKFDGRGLMIMTNLTHMAIVLGMARG
ALESYIDMARKQQPFNLPYPRVAEMASTQVCAAKAYAMIKMAETTALCAADLLDRHAT
EGREVSEELEQATMMENVYAAHTLDNAVSILQLNIGSATAHESNPFQRFVRDIRVAML
HGAVRLEPTAEIFGRRMMGLAPFSMFAGGLPDRAA"
misc_feature 311740..312948
/locus_tag="Avi_5311"
/note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region:
CaiA; COG1960"
/db_xref="CDD:32143"
misc_feature 311791..312936
/locus_tag="Avi_5311"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
misc_feature order(312019..312021,312115..312117,312130..312132,
312187..312189,312193..312195,312889..312900,
312904..312906,312910..312912)
/locus_tag="Avi_5311"
/note="active site"
/db_xref="CDD:173838"
gene 313060..314382
/locus_tag="Avi_5313"
/db_xref="GeneID:7380676"
CDS 313060..314382
/locus_tag="Avi_5313"
/codon_start=1
/transl_table=11
/product="MFS permease"
/protein_id="YP_002547175.1"
/db_xref="GI:222106384"
/db_xref="GeneID:7380676"
/translation="MQSNKTHAPANFRANKGFEYSFQAAKVLGALWAIVLLVVAVPSI
GTAVVNARMITDLNMDRAVFGMGFGLFVMMMGFQAPVVAVLIRKFGYRSTVAFGCLVL
FLGSVAMATVVHNGWQYAVAFGLLAGSGVCIAGMLPAQTIVTRWFHARRALAVSIVFS
AVEIGGFFSPPALERLMAISGDWRTAWWLIAGSAIIAMITAYIALDERRVENYISRNP
APSFARENSKVFKSTTHWTLREALGTKAYWLILIYMSIAGVAWIFLMAHGVVHLRDIG
YSPAEAANAVAVIIVASFIGNMTAGFLGDRISPSLISAASMALIIFGFCMVIKPVGFT
GILLYALPAGIGYGASQVCLMALLGNYFGKASFSAILGSMMPVSTLCAAIGAGSAGAV
FDQTGTYEWVFITIITLCVVAFFAILAASPPQNRGNKEEVSGSPIAAE"
misc_feature 313216..314319
/locus_tag="Avi_5313"
/note="D-galactonate transporter; Region: 2A0114;
TIGR00893"
/db_xref="CDD:162094"
misc_feature 313294..314313
/locus_tag="Avi_5313"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(313294..313299,313303..313308,313450..313455,
313462..313467,313474..313479,313486..313488,
313522..313527,313534..313539,313555..313557,
313831..313833,313840..313845,313852..313857,
313864..313866,313903..313905,313915..313917,
313927..313929,313936..313938,313948..313950,
314089..314091,314098..314103,314110..314112,
314122..314127,314134..314136,314167..314172,
314179..314184,314191..314196,314203..314205)
/locus_tag="Avi_5313"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 314409..315788
/locus_tag="Avi_5314"
/db_xref="GeneID:7380677"
CDS 314409..315788
/locus_tag="Avi_5314"
/codon_start=1
/transl_table=11
/product="Carbohydrate-selective porin"
/protein_id="YP_002547176.1"
/db_xref="GI:222106385"
/db_xref="GeneID:7380677"
/translation="MRTLNLLAVPLLLASLLPAAAADTALPSSDTPPGEGGMPGPVYS
GPLASVGRTLHDNGIDLQLDFVDFYQNAPSFGAAGGSSANYGMFILGVTGNLTPDLRV
NLVETINAPTQNVDNYLFDLSNAFFPVPIVNSDTDLTRFTIEGDLFNDRLTVEAGRMG
LNRDFMKKGFCGGIGCVPSTPAITLNMPGEALSVWGGRLAYRLDQTTTLGFGAIEDNS
DNWQNGDGWDWGTGDAKGYIAIANISHDETFMQNANPLKYEVGAYHRSTSYEDALYNS
GWGNPTFGANTKIVNHDGGTSGVYGQVRKVVWSEASGSPIPENLAVYGGLFHTFGDGQ
AYPWEAYAGVEYSGFWKENPLATVGASVHYIRLSEERAQYEQNARRFFSGVNEKQPQD
TFMVDVHASTGFFGNGILDFGAAYIINPNNSILADYSTGREKNGVVIYAALAFDLGGS
LGLSPRKGP"
misc_feature <314820..315749
/locus_tag="Avi_5314"
/note="Carbohydrate-selective porin [Cell envelope
biogenesis, outer membrane]; Region: OprB; COG3659"
/db_xref="CDD:33457"
misc_feature 314820..315569
/locus_tag="Avi_5314"
/note="Carbohydrate-selective porin, OprB family; Region:
OprB; pfam04966"
/db_xref="CDD:191144"
gene 315851..316270
/locus_tag="Avi_5315"
/db_xref="GeneID:7380678"
CDS 315851..316270
/locus_tag="Avi_5315"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547177.1"
/db_xref="GI:222106386"
/db_xref="GeneID:7380678"
/translation="MHDTKTHDHAKLERHKHLVREFYRRVFDGQNPAAVKDFVTEDYK
QHSRHIPTGREGLERFVQSVFPNGPVPEPAEMRIPPAFMVAEGDMVVVAAYLPQPDPD
KPGETYDYFVFDAYRLRDERLAEHWSGVNKIAPPKQP"
misc_feature 315878..316261
/locus_tag="Avi_5315"
/note="Nuclear transport factor 2 (NTF2-like) superfamily.
This family includes members of the NTF2 family,
Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases,
and the beta subunit of Ring hydroxylating dioxygenases.
This family is a classic example of...; Region: NTF2_like;
cl09109"
/db_xref="CDD:211454"
gene 316343..316933
/gene="attY"
/locus_tag="Avi_5317"
/db_xref="GeneID:7380679"
CDS 316343..316933
/gene="attY"
/locus_tag="Avi_5317"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase"
/protein_id="YP_002547178.1"
/db_xref="GI:222106387"
/db_xref="GeneID:7380679"
/translation="MQLYHTPGTCSTASRIVLQETSIAASSIPVNLREKTLPDGTSYL
QVNPKGQVPALVLDDGNVLTEGAIILQYLADQAPESGLLPPPGDLARYRVLEWTNYVA
TELHKTFTPLMRPNTPPDFAEITKTALLPRVFGTLDRRLGLSDYLAGATFSIADAYAF
VILGWAKLQAIDLAAWPNIQAYLKRIESRPSVQSLQ"
misc_feature 316343..316924
/gene="attY"
/locus_tag="Avi_5317"
/note="glutathionine S-transferase; Provisional; Region:
PRK10542"
/db_xref="CDD:182533"
misc_feature 316343..316576
/gene="attY"
/locus_tag="Avi_5317"
/note="GST_N family, Class Beta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens;
Region: GST_N_Beta; cd03057"
/db_xref="CDD:48606"
misc_feature order(316361..316366,316379..316381,316385..316387,
316397..316402,316553..316555,316565..316567)
/gene="attY"
/locus_tag="Avi_5317"
/note="C-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:48606"
misc_feature order(316370..316372,316493..316498,316535..316540)
/gene="attY"
/locus_tag="Avi_5317"
/note="GSH binding site (G-site) [chemical binding]; other
site"
/db_xref="CDD:48606"
misc_feature order(316493..316495,316532..316537,316541..316543,
316556..316558,316565..316567)
/gene="attY"
/locus_tag="Avi_5317"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48606"
misc_feature 316607..316921
/gene="attY"
/locus_tag="Avi_5317"
/note="C-terminal, alpha helical domain of Class Beta
Glutathione S-transferases; Region: GST_C_Beta; cd03188"
/db_xref="CDD:198297"
misc_feature order(316607..316609,316616..316621,316628..316630,
316637..316639,316649..316651,316661..316663,
316688..316690,316715..316717,316724..316726,
316736..316738)
/gene="attY"
/locus_tag="Avi_5317"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198297"
misc_feature order(316613..316615,316658..316660,316802..316804,
316823..316825,316835..316837,316907..316909,
316913..316915)
/gene="attY"
/locus_tag="Avi_5317"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198297"
misc_feature order(316646..316648,316658..316663,316670..316675,
316679..316681,316826..316828,316835..316837,
316844..316846)
/gene="attY"
/locus_tag="Avi_5317"
/note="substrate binding pocket (H-site) [chemical
binding]; other site"
/db_xref="CDD:198297"
gene 316946..317845
/locus_tag="Avi_5318"
/db_xref="GeneID:7380680"
CDS 316946..317845
/locus_tag="Avi_5318"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002547179.1"
/db_xref="GI:222106388"
/db_xref="GeneID:7380680"
/translation="MTYLIRQMGHVIISSPDPLGAAQDLCDVVGLRITEVDGETVYLS
SNDRHHEVTYIKGDGKAVACGLEAVNADAVDEVYRRAKSDGLEILSDRPLGKHYDRAV
RLVAPGGTIFEVHTPIARNQPRHYSYSTPGARPRRIEHINSFAPDTAAYGDFCVKVLG
LKLSDMTEDGALRWYRAEDGYHHTIAMGPGESGLHHYAFDLHSLQDLQTIADNLAGKE
RALVWGPGRHGAGGNVFTYYADPHGCLVENSIELDRIDNDATYEPRSWDISEGLAGRW
LNLWGTPPTPSFLRPGIAFDPTI"
misc_feature 316958..317806
/locus_tag="Avi_5318"
/note="3,4-dihydroxyphenylacetate 2,3-dioxygenase; Region:
HpaD; TIGR02295"
/db_xref="CDD:211729"
misc_feature 316958..>317209
/locus_tag="Avi_5318"
/note="This domain superfamily is found in a variety of
structurally related metalloproteins, including the type I
extradiol dioxygenases, glyoxalase I and a group of
antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
cl14632"
/db_xref="CDD:211465"
misc_feature order(316973..316975,316985..316987,317063..317065,
317102..317104,317108..317110,317132..317134)
/locus_tag="Avi_5318"
/note="active site"
/db_xref="CDD:211348"
misc_feature 317363..317746
/locus_tag="Avi_5318"
/note="C-terminal domain of type I, class II extradiol
dioxygenases; catalytic domain; Region:
ED_TypeI_classII_C; cd08343"
/db_xref="CDD:211355"
misc_feature order(317363..317365,317369..317371,317465..317467,
317492..317494,317531..317533,317537..317539,
317627..317629,317654..317656,317684..317686)
/locus_tag="Avi_5318"
/note="active site"
/db_xref="CDD:211355"
misc_feature order(317363..317365,317531..317533,317684..317686)
/locus_tag="Avi_5318"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:211355"
gene 318061..318951
/locus_tag="Avi_5319"
/db_xref="GeneID:7380681"
CDS 318061..318951
/locus_tag="Avi_5319"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547180.1"
/db_xref="GI:222106389"
/db_xref="GeneID:7380681"
/translation="MSFTLNPAFRYRMPLSFGPAPGPRQKPGGGMWAAEETGRMNAEW
MAVTYRTLPEKLEALLPPGMELRGEPLVTVSCAWFKNLYWLAGRGYGIVVVDFPVTYR
GKTETLEGTFCPVLWEGAPDAIMTGRDELGFPKMFADIPEIEHDKAQGTAACSASWMG
FKFFDIALTDLVEAGNEPALPGADNGPSMYYKYVPRTSPGGREGADIAYVTTAAAPPE
TGGRVSNINFDGFDFKRWTAKGSVAWHRATFEQLPLSAHVVNGMADLDILEVTKVQMV
AFSGPGIAVSVNSMRAVDPS"
misc_feature 318094..318870
/locus_tag="Avi_5319"
/note="Acetoacetate decarboxylase (ADC); Region: ADC;
pfam06314"
/db_xref="CDD:203424"
gene 318967..319818
/locus_tag="Avi_5320"
/db_xref="GeneID:7380682"
CDS 318967..319818
/locus_tag="Avi_5320"
/codon_start=1
/transl_table=11
/product="fumarylacetoacetate (FAA) hydrolase family
protein"
/protein_id="YP_002547181.1"
/db_xref="GI:222106390"
/db_xref="GeneID:7380682"
/translation="MKLARFTIDGVTRLGKVDNQRIVDLTAVVPEYGHSMRLLLEAYP
TLRPALEAVTEPSYLLADVRLEAPIADPQKFLAIGMNYQAHAEEAAAAGIKTPESQLW
FNKQVSCINGPYGDVVVPGVSNMVDYEAELGFVIGKRCRHVSREDARSVIAGYLVAND
VTARDWQFRSPTYTLGKSFDTHGPIGPWITTDDEIADPHDLTLTLSLNGQERQRSSTG
DMIYDIYDQIVYLSTVMTLEPGDVIITGTPSNVGIVTQTFLKPGDVVRVEVQGLGGIE
NRCVAEN"
misc_feature 318967..319170
/locus_tag="Avi_5320"
/note="Domain of unknown function (DUF2437); Region:
DUF2437; pfam10370"
/db_xref="CDD:150960"
misc_feature 318994..319815
/locus_tag="Avi_5320"
/note="2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway) [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: MhpD; COG0179"
/db_xref="CDD:30528"
misc_feature 319186..319806
/locus_tag="Avi_5320"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; pfam01557"
/db_xref="CDD:201859"
gene 319994..321124
/locus_tag="Avi_5321"
/db_xref="GeneID:7380683"
CDS 319994..321124
/locus_tag="Avi_5321"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="YP_002547182.1"
/db_xref="GI:222106391"
/db_xref="GeneID:7380683"
/translation="MKFLSVMIVWAALITSAHAQSINAGNHPVSSTKPFSAKEVARFD
TPWAIAFLPDGRMLVTEKPGLIFLVLQNGRKTPVANVPAVAAEGQNGLLDIASSPGFQ
KNREVYFTYSEPGASGSSLVLSRAKLAASGTSASLEDMTVIWRQTPAGGGGQSGGIIA
FDPDGTHLYLTVGDRMRPDTAQDPNQARGKLLRLNLDGSTPADNPQADQGGVKAQTFT
TGHRNPYGLAFGLDGKLWLHEMGPRGGDELNLIKAKGNYGWPLVSNGDNYSGTRIPRH
STRPEFIAPALYWNPVIAPAGLAIYNGQMFPQWRGSALIGGLASMALIRVTFDASGGA
EEADRFDMEARIRDVAVAPDGAVWVIEDDSEGRLLRLTPVKG"
misc_feature 320042..321091
/locus_tag="Avi_5321"
/note="dehydrogenase, PQQ-dependent, s-GDH family; Region:
non_repeat_PQQ; TIGR03606"
/db_xref="CDD:163350"
misc_feature 320123..321091
/locus_tag="Avi_5321"
/note="Glucose / Sorbosone dehydrogenase; Region: GSDH;
pfam07995"
/db_xref="CDD:203835"
gene complement(321142..322455)
/locus_tag="Avi_5322"
/db_xref="GeneID:7380684"
CDS complement(321142..322455)
/locus_tag="Avi_5322"
/codon_start=1
/transl_table=11
/product="glycosylase"
/protein_id="YP_002547183.1"
/db_xref="GI:222106392"
/db_xref="GeneID:7380684"
/translation="MPNSSLLNRQALYLRPDPTRVIVRPFKPSTEPRHLNPRDKNRAN
EIVDRVLSLDPAGTTNQLRDILDNFEGRHRNLLRQFELRADAMEDAFSQHQSFSQQQR
QLVGAYFMNEYSFESAALFNPSIVAHPDQTGMAQGCCRLIISLRAVGEGHISSMTFRT
GMIDAEGAVTIDPPVRLAGLPHIHASDGLSPAGCIGISFDSESDLSERVIFPVTEAQS
NGIEDARFVAFDDDGKTVYFATYTAYSGSSIRSELLETQDFLSFTLTPLRGPAARNKG
MALFPRRINGRFAMIARQDSENLFLLYSDDLHHWDEGLVLMKPEFAWQFVQIGNCGSP
VEIDEGWLLFTHGVGPMRRYSIGVTLLDKEDPSIILARTVEPLLQPEPTEREGYVPNV
VYSCGAMRHGDLIALPYAVSDTYSNFSTVQISALLSSMHPAGQTG"
misc_feature complement(321187..321870)
/locus_tag="Avi_5322"
/note="Glycosyl hydrolase families: GH43, GH62, GH32,
GH68; Region: GH43_62_32_68; cl14647"
/db_xref="CDD:209879"
misc_feature complement(order(321466..321468,321628..321630))
/locus_tag="Avi_5322"
/note="active site"
/db_xref="CDD:185718"
gene complement(322491..324770)
/locus_tag="Avi_5324"
/db_xref="GeneID:7380685"
CDS complement(322491..324770)
/locus_tag="Avi_5324"
/codon_start=1
/transl_table=11
/product="glycosyltransferase"
/protein_id="YP_002547184.1"
/db_xref="GI:222106393"
/db_xref="GeneID:7380685"
/translation="MIKTKRIAFIGNSLPRQCGIATFTTDLSHAMSNPALGIETSIIA
MTDDKLNYAYPANVVFDVRDGEIEDYVTAARILNNGDYRAVSLQHEFGIFGGPDGEFI
LTLLSHLRIPVITTFHTILAEPTPSQKRVLQQVAGASSRVVVMADKGREFLENVYGVD
PGKIDVIAHGIPDKAFHDPELAKGKMGYSGRQIILTFGLLSPNKGIEVVIDAMPAILK
VQPDTLYIVLGATHPTLLRREKEAYRDSLRIRAEQLGVERSVVFLNQFVDVPTLLDFI
AMCDVYVTPYRDEAQMTSGTLAYSFGMGSAVVSTPYWHARELLDDHRGILVPFSDAQA
TGEAIARLLGDDQARQAMRKAAYETGRSMIWPHIASLYLKSIETARAAYRPRLIRDLI
TQSMTRPQHGTSLKLGHFNTMCDDTGIFQHAVFSVPDRAHGYCVDDNARALILACHLA
GAGETGIHDGRTASFASFIQHAWNPDLKQFRNFMSFDRRWLEDKGSEDSHGRTLWSLG
ICASSDSDRPRRRWAAALFAKAAPVVEHFHSPRAWAFTLIGLDAYCRVTPEDDAAAQL
RTVLAERLMKLEHQVSTADRHWFEEGLSYENARIPQALIATGMATGSDELMDTGLRTL
GWLMQQQTASGGQFRPVGTDGFFDVGEAPKLFDQQPVEATATISACLAAYDATRDKTW
LEAATRTFTWFTGSNDHGVSLVDPETGSCRDGLHPDRANENRGAESVLCYLISCFEVG
RASRLTQAAPKLAELQQLS"
misc_feature complement(323628..324758)
/locus_tag="Avi_5324"
/note="Glycosyltransferase [Cell envelope biogenesis,
outer membrane]; Region: RfaG; COG0438"
/db_xref="CDD:30787"
misc_feature complement(323640..324755)
/locus_tag="Avi_5324"
/note="This family is most closely related to the GT1
family of glycosyltransferases. ORF704 in E. coli has been
shown to be involved in the biosynthesis of O-specific
mannose homopolysaccharides; Region: GT1_ecORF704_like;
cd03822"
/db_xref="CDD:99992"
gene complement(324890..325237)
/locus_tag="Avi_5325"
/db_xref="GeneID:7380686"
CDS complement(324890..325237)
/locus_tag="Avi_5325"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547185.1"
/db_xref="GI:222106394"
/db_xref="GeneID:7380686"
/translation="MRNTVHAVPNPLCQLAILSCQFKEARSMFTRTKTRIVHFECPFT
LPGLEGTQPAGDYQVKDDEEQITGISWLAYRRVATLIEIAKGSTTSLVAIDNLDLDAA
IEKDRGTSITATG"
gene complement(325759..327915)
/gene="catE"
/locus_tag="Avi_5326"
/db_xref="GeneID:7380687"
CDS complement(325759..327915)
/gene="catE"
/locus_tag="Avi_5326"
/codon_start=1
/transl_table=11
/product="catalase C"
/protein_id="YP_002547186.1"
/db_xref="GI:222106395"
/db_xref="GeneID:7380687"
/translation="MPKQRSQNQGKNAAAISNEATIHDQKLVRGKGGELHQIAENDQV
LTTAQGGPVADDQNSLRIGDRGPLVVDDFHFREKIFHFDHERIPERVVHARGYGAHGF
FETYESFAEYTRADVFQRPGEKTPVFVRFSTVAGNKGSADLARDVRGFAVKMYTKEGN
WDLVGNNIPVFFIQDAIKFPDLIHAAKQEPDRAFPQAQTAHDNFWDFISLTPESMNMI
MWIMSDRTIPRSLRFMEGFGVHTFRFVNANDESTFVKFHWKPKLGLQSVAWNEAVKIN
GADPDFHRRDLWHAIKSGNFPEWELQVQLFDQEFADSFDFDVLDPTKIIPEEILPPKA
IGRLVLDRMPDNFFAETEQVAFMTQNVPPGIDFSNDPLLQGRNFSYLDTQLKRLGGPN
FTHLPINAPKCPFANFQQDGHMAMRNPVGRANYQPNSFGEGPRESPTRGYRHFPAEEQ
GTKVRLRPESFADHYSQARQFYISQTPLEQRHIAAALTFELSKVEMPVIRERMVAHLM
NIDETLATTVAEKLGFKSMPKPADAAVPTRDDLEPSPALSIIKRGPKRFEGRKLGILI
TDGVDVKLLKALTDAVTAAKAEFELIAPKVGGVTGSDGTWIEAHHMIDGGPSVLFDAV
AVLTSDAGMADLVKEATARDFVADAFQHCKFIGYTQSAMPLFEKAGITEDLDEGTIGL
PGEDGIADFIEKLGKLRVWAREPSVKLGKASVPLDD"
misc_feature complement(326326..327825)
/gene="catE"
/locus_tag="Avi_5326"
/note="Catalase [Inorganic ion transport and metabolism];
Region: KatE; COG0753"
/db_xref="CDD:31096"
misc_feature complement(326350..327669)
/gene="catE"
/locus_tag="Avi_5326"
/note="Clade 2 of the heme-binding enzyme catalase;
Region: catalase_clade_2; cd08155"
/db_xref="CDD:163711"
misc_feature complement(order(326410..326412,326422..326424,
326428..326430,326437..326442,326629..326646,
326671..326679,326683..326685,326692..326694,
326698..326703,326713..326715,326725..326736,
326740..326745,326752..326760,326767..326772,
326779..326787,326794..326796,326803..326805,
326809..326811,326833..326838,326857..326859,
326866..326868,326872..326877,326881..326883,
326959..326961,326965..326967,326980..326985,
327052..327054,327061..327066,327073..327075,
327085..327090,327097..327099,327106..327108,
327298..327300,327307..327309,327331..327348,
327364..327366,327373..327375,327379..327393,
327436..327441,327496..327501,327643..327645,
327658..327660))
/gene="catE"
/locus_tag="Avi_5326"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:163711"
misc_feature complement(order(326776..326778,326788..326790,
327379..327381,327403..327405,327418..327420,
327520..327522,327637..327639))
/gene="catE"
/locus_tag="Avi_5326"
/note="heme binding pocket [chemical binding]; other site"
/db_xref="CDD:163711"
misc_feature complement(325819..326241)
/gene="catE"
/locus_tag="Avi_5326"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain found in at the C-terminal of several large
catalases; Region: GATase1_catalase; cd03132"
/db_xref="CDD:153226"
misc_feature complement(order(325975..325977,325984..325986,
326125..326133))
/gene="catE"
/locus_tag="Avi_5326"
/note="domain interactions; other site"
/db_xref="CDD:153226"
gene complement(328078..329682)
/locus_tag="Avi_5327"
/db_xref="GeneID:7380688"
CDS complement(328078..329682)
/locus_tag="Avi_5327"
/codon_start=1
/transl_table=11
/product="phosphate transporter"
/protein_id="YP_002547187.1"
/db_xref="GI:222106396"
/db_xref="GeneID:7380688"
/translation="MAELAPSNSPLNSAGHPLDRAHGSGKWFMPVFGVVLLVGLGYIG
YALGQDLTSTVAVPWIFLGLALLIALGFEFVNGFHDTANAVATVIYTRSMPAEFAVMW
SGFFNFLGVLTSSGAVAFGILSLLPVELILQVGSGSGLAMVFALLIAAIVWNLGTWYL
GLPSSSSHTLVGSIIGVGLANQFLAPAGSATSGVDWSQATNIGLSLLISPLIGFGFSA
ILLLAMKLFVKNKALYQEPKTNQPPPLWIRGLLIFTCTGVSFAHGSNDGQKGMGLIML
ILIGLVPTAFALNRTPDVNYLEAYKSSSAQVETALGKYIKPGVTVADAKATVADAVKT
KTWSDTTTLALQQYIHATSAEVAAFPTLEAVPNHLVQNIRNDIYLIGEALKLIDKQKL
LPMEASDLAAVSAYHKAVDNATKFIPTWVKVAVALALGLGTMIGWRRIVVTVGEKIGK
THLTYGQGAAAEIVAMVTIGAADHFGLPVSTTHVLSSGVAGTMTANGSGLQWSTVRNM
LMAWVLTLPASIAIAFVLYVVLRQVF"
misc_feature complement(<328876..329457)
/locus_tag="Avi_5327"
/note="Phosphate transporter family; Region: PHO4;
pfam01384"
/db_xref="CDD:201762"
misc_feature complement(328114..>328476)
/locus_tag="Avi_5327"
/note="Phosphate transporter family; Region: PHO4;
pfam01384"
/db_xref="CDD:201762"
gene 330054..331229
/locus_tag="Avi_5328"
/db_xref="GeneID:7380689"
CDS 330054..331229
/locus_tag="Avi_5328"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002547188.1"
/db_xref="GI:222106397"
/db_xref="GeneID:7380689"
/translation="MMQHSLKLAGIGKSFAADDILKNIDLEVHPGEFLSLVGMSGCGK
STLLRIIAGLERPDRGQVLIDNSDVTDMDPSDRNLAMVFQSYALYPHMTVRQNIATPL
RMRRLSLAGRLPLIGRLVAPSEIVKDIKRSVEEAAETLQIAHLLDRRPAQLSGGQRQR
VALARALVRSPAAFLMDEPLSNLDAKLRAHMRDELVGLHRRLGATFIYVTHDQIEAMT
MSDRVALMHEGRIEQLGTPDELYHRPATLTVARFIGTPSINLLPVMIGMQGQVTAFGK
DLDLRALDQDGGPATLGLRAEDLRVQDLRAQDLRASGNGFAVRVQRSETHGADRFVTC
RLIDDETVVVTMRQGARDALGADAHGLMTIGFAPERAHLFGADGTRCAVSIRERVAA"
misc_feature 330066..331193
/locus_tag="Avi_5328"
/note="glycerol-3-phosphate transporter ATP-binding
subunit; Provisional; Region: ugpC; PRK11650"
/db_xref="CDD:183258"
misc_feature 330069..330758
/locus_tag="Avi_5328"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 330165..330188
/locus_tag="Avi_5328"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(330174..330179,330183..330191,330303..330305,
330582..330587,330684..330686)
/locus_tag="Avi_5328"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 330294..330305
/locus_tag="Avi_5328"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 330510..330539
/locus_tag="Avi_5328"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 330570..330587
/locus_tag="Avi_5328"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 330594..330605
/locus_tag="Avi_5328"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 330672..330692
/locus_tag="Avi_5328"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature 330927..331175
/locus_tag="Avi_5328"
/note="TOBE domain; Region: TOBE_2; pfam08402"
/db_xref="CDD:203932"
gene 331226..332152
/locus_tag="Avi_5329"
/db_xref="GeneID:7380690"
CDS 331226..332152
/locus_tag="Avi_5329"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002547189.1"
/db_xref="GI:222106398"
/db_xref="GeneID:7380690"
/translation="MTAGSSSMALTAKPRASWQTAERRMVRRGLLFAAPAVLLLLAIY
IVPMLVLAAFSVTDYQLGALTIHFVGLGNFIKAFHDPVFIRAVINTAIYAVIVIPLGV
FLALGVALLVHNRKRSRAFWEVAYFLPVTATLVAMATVWQFLLHPSLGPVNAAIKWLG
FEPVAFLSNPMLLIPTMAWIGVWQVLGFNMVLFLAGLTAIPKDLHEAVRLDGAKNSID
RFFTVTWPMLGPTTLFVVVTTSISAFKVFETVAVLTKGRSGSETLLFDLYLEGFEYSN
TGYAAALTLLFLAIVLILSIGQTLHMDRKVHY"
misc_feature 331568..332002
/locus_tag="Avi_5329"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(331577..331588,331592..331621,331628..331633,
331637..331639,331754..331759,331763..331765,
331787..331789,331796..331801,331805..331807,
331817..331822,331829..331831,331883..331885,
331925..331930,331937..331939,331958..331969,
331976..331981)
/locus_tag="Avi_5329"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(331595..331639,331958..331975)
/locus_tag="Avi_5329"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(331637..331639,331739..331741,331976..331978)
/locus_tag="Avi_5329"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(331832..331864,331868..331873,331889..331894,
331904..331906)
/locus_tag="Avi_5329"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 332149..332973
/locus_tag="Avi_5330"
/db_xref="GeneID:7380691"
CDS 332149..332973
/locus_tag="Avi_5330"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_002547190.1"
/db_xref="GI:222106399"
/db_xref="GeneID:7380691"
/translation="MMTRFRTYLPHILLAAGAFVMLLPFYWMVLTSIRSPSEIFNVSL
WPIPEKFEGVENYARAASQVPMARFMLNGVIVCFGILFVQVVTAVPAAYALAKLRFPG
RKLLLTLVIAALCVPIQALALPLFVGLAKAQLLNTYFAMMAPFFLSVFAIFLFHQSFR
SYPDEIIEAARMDGFSEMEICWGLVLRGSLPSLAAFAVFSLVAHWNDLYWPMIVISDT
NLAPPPLGMLLFADVESGANYGALMAGATLITAPMVLCFLLARRHFIAGITMTGVK"
misc_feature 332158..332970
/locus_tag="Avi_5330"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 332356..332910
/locus_tag="Avi_5330"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(332404..332409,332416..332421,332434..332436,
332464..332475,332479..332508,332515..332520,
332524..332526,332581..332586,332590..332592,
332596..332598,332605..332610,332614..332616,
332626..332631,332638..332640,332689..332691,
332731..332736,332743..332745,332764..332775,
332782..332787,332827..332832,332860..332865,
332872..332877,332881..332886,332893..332898,
332905..332910)
/locus_tag="Avi_5330"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(332482..332526,332764..332781)
/locus_tag="Avi_5330"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(332524..332526,332566..332568,332782..332784,
332821..332823,332830..332832,332860..332862)
/locus_tag="Avi_5330"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(332641..332679,332695..332700,332710..332712)
/locus_tag="Avi_5330"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 333017..334312
/locus_tag="Avi_5331"
/db_xref="GeneID:7380692"
CDS 333017..334312
/locus_tag="Avi_5331"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(sugar)"
/protein_id="YP_002547191.1"
/db_xref="GI:222106400"
/db_xref="GeneID:7380692"
/translation="MKINRRTVVSGLALGLAAAGLSTPVLAADEVTLNVLYNLPGFTK
FHQPLADAFMKNNPNVKINFLAPAPGYNEGQQQVLRAAVTGNLPDVYFSGFNLTAELV
HTLAPRNQITDLAPFIAAEGGQAFLDKNYNPKMAALGQIDGKQYGLPVNASSPIIYIN
ADLVKKAGGDPDNMPKTFPGLISLAKNIHALDPKISGMGYDINGWPDDWLWQALVLEQ
GGTLVNEKTKTVAFDNEIGLNALKMVRQFVTEGGQTLLDWDQSRQQFGAGLTGFIFST
PAHVQTIEGLVGDRFKLKTATFPLDNPEKGGVPTGGNSAVILTQDKAKQDAAWKYLKW
ITGPEAQNTIVRITGYLPTNKLATGADYLAPYYAEHPNVKTASLQADRSLPWAGYPGG
DSVRVWRTQRDIIGTVMRGEVTPEVGLKQMVDQTNALLK"
misc_feature 333095..334309
/locus_tag="Avi_5331"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
misc_feature 333161..334153
/locus_tag="Avi_5331"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
gene 334415..335205
/locus_tag="Avi_5332"
/note="conserved hypothetical protein; Frameshift
(pseudogene)"
/pseudo
/db_xref="GeneID:7380693"
gene complement(335340..336872)
/gene="vdh"
/locus_tag="Avi_5334"
/db_xref="GeneID:7380694"
CDS complement(335340..336872)
/gene="vdh"
/locus_tag="Avi_5334"
/codon_start=1
/transl_table=11
/product="vanillin: NAD oxidoreductase"
/protein_id="YP_002547192.1"
/db_xref="GI:222106401"
/db_xref="GeneID:7380694"
/translation="MLAALAWRRRVKPARGGDVLQQNIGQSAFQPQAYEGFSGQYIAG
RWVEGTEGKTALDRNPYDDTVVAEISQASLDDLNRAFGAAKAAQTEWARVLPSERAAV
FLRAVSILDARKEEIISWIIRESGSTRIKAGIEWGAVRAGMLEAVTLPAAAQGHIIPV
DKPGKEARVYKKPVGVVGVISPWNFPLHLSNRSVAPALALGNAVVLKPSNDTPVTGGL
LLAKIYEEAGLPAGLLNVVVGSSSVIGDAFSRHPVPRVLTFTGSTPVGRHIAQVAGES
SLLKRVGLELGGNAPLVVLDDADLEKAVGAALIGRFMHQGQICMSTNRIIVDASIYDN
FVEAFTAAVKTIKFGNPNEPDTLIGPLCNDSQLRSVTASIARARDSGFRECVSGPIEG
RVVAPHVFADVTNDSDFARNEIFGPVAPIIRAQDEAQALAFANDTEFGLSSAVFTRDE
ARGLAFAQQIEAGMSHINDITIHDYPHVMFGGEKNSGLGRFNGKWAVEEFTTDHFISV
QR"
misc_feature complement(335343..336743)
/gene="vdh"
/locus_tag="Avi_5334"
/note="NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like; Region: ALDH_HBenzADH; cd07151"
/db_xref="CDD:143469"
misc_feature complement(335367..336737)
/gene="vdh"
/locus_tag="Avi_5334"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:201055"
misc_feature complement(order(335433..335435,335550..335552,
335628..335630,335634..335636,335916..335918,
336012..336020,336066..336071,336078..336080,
336087..336098,336243..336248,336252..336254,
336297..336299,336321..336335))
/gene="vdh"
/locus_tag="Avi_5334"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143469"
misc_feature complement(order(335916..335918,335925..335927,
336018..336020,336321..336323))
/gene="vdh"
/locus_tag="Avi_5334"
/note="catalytic residues [active]"
/db_xref="CDD:143469"
gene complement(337043..338479)
/locus_tag="Avi_5336"
/db_xref="GeneID:7380695"
CDS complement(337043..338479)
/locus_tag="Avi_5336"
/codon_start=1
/transl_table=11
/product="glucokinase"
/protein_id="YP_002547193.1"
/db_xref="GI:222106402"
/db_xref="GeneID:7380695"
/translation="MSLPLFSIGIDVGGTNMRAAQISPKGEIIRKTSVTGSRDPSKAV
TLIKSLIHEMDGERATAIGIGIPGRVDGWTGEIISGGFLNLSGCDLQSEMSATSGRPV
TVANDCSMALIGEARVGAARGMNSSVMLTIGTGIGGAVMENGRIVNGRRCAGQLGHLV
VNLHGQPCPCGQRGCIETESSGTALQRHLREAGYAPETRFEAILALAESGDKVALQVM
TAWAAPLKSAINTLSAAFDPDVVLLGGGMGKAALAALNFLPRSETWYEADIRGARLDD
DAGVIGCGLAAFDLLNADHPGKPAHGKRLVMVNGVPASGKSAISHKIAGETGWQVLSL
DEIKNPFLELIDDVDRPFNRLLGRASYKSIFSIIRDAAPGTTFIVDAWFGFQPADVLK
EHIAMAGITQIVELWCHAPAETIGERYRSRLENRLPGHPGASYIPELIELAQRAEPIG
LAPVLNIDTTQPKDAKAILDWMVKAFEN"
misc_feature complement(337601..338464)
/locus_tag="Avi_5336"
/note="Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism];
Region: NagC; COG1940"
/db_xref="CDD:32123"
misc_feature complement(337991..338458)
/locus_tag="Avi_5336"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature complement(order(338078..338089,338159..338161,
338426..338428,338432..338434,338438..338449))
/locus_tag="Avi_5336"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
misc_feature complement(337184..337567)
/locus_tag="Avi_5336"
/note="AAA domain; Region: AAA_33; pfam13671"
/db_xref="CDD:205848"
misc_feature complement(337202..337567)
/locus_tag="Avi_5336"
/note="AAA domain; Region: AAA_17; pfam13207"
/db_xref="CDD:205388"
misc_feature complement(order(337526..337537,337550..337552))
/locus_tag="Avi_5336"
/note="active site"
/db_xref="CDD:73295"
gene complement(338494..339408)
/locus_tag="Avi_5337"
/db_xref="GeneID:7380696"
CDS complement(338494..339408)
/locus_tag="Avi_5337"
/codon_start=1
/transl_table=11
/product="aldolase"
/protein_id="YP_002547194.1"
/db_xref="GI:222106403"
/db_xref="GeneID:7380696"
/translation="MTVMTTAERRGYHQICNGSGSMMVIACDQRGGMRSILAATPEEQ
AKIGNDILGETKADIARYLASHAGCVLVDPVCAVPGLIDNDILPRDTALLIGIDASGW
DTSPEGYRISKMVEGVDARRVRALGATGGKIMVYLRMDTPAANVANLETLKRTIEDFA
REDFLLVVEFLTYQLEGESREDYQAKIPQLIVEGSRACLELGSKVLKIPYPGSEKACA
EVTKVAGDVPWAVLSAGVDHETFLLQVEAAMKNGASGVIAGRSLWKDCIDLDRNISKE
KLSTIAVSRLHDIQDIIGRYRNKQRVAA"
misc_feature complement(338506..339405)
/locus_tag="Avi_5337"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl09108"
/db_xref="CDD:213114"
misc_feature complement(338788..338790)
/locus_tag="Avi_5337"
/note="catalytic residue [active]"
/db_xref="CDD:188634"
gene 339684..340625
/locus_tag="Avi_5338"
/db_xref="GeneID:7380697"
CDS 339684..340625
/locus_tag="Avi_5338"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_002547195.1"
/db_xref="GI:222106404"
/db_xref="GeneID:7380697"
/translation="MVAKLHYEAEMSQVEIARKLGISTATVSRLLQRARVLGIVKIEV
LDLVSPAGLTQELIEALSLKRAAVIDTPSTGILGALAKPLGDLLKEEGLAAGSVIGIG
WGRAIREVIAAGLPRIPGIIAVALNGGLQQSAPHFQISEFVRQAADQLGGSAHFLHAP
YLSSAELKDAFLADSFVQETTKLWDRLDCAIVGIGLPHAINPPEASAATVNERAIGGA
VGDVIRHYVDINGKLLSWDGEERMIAASSQQLCKAKLSIGVAATVEKAAGIIGAVRSG
MINSLVTDANTCIAILNLLQQDAPSQGAEKQTKAKKK"
misc_feature <339684..339788
/locus_tag="Avi_5338"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature 339687..340568
/locus_tag="Avi_5338"
/note="Transcriptional regulator, contains sigma
factor-related N-terminal domain [Transcription]; Region:
DeoR; COG2390"
/db_xref="CDD:32535"
misc_feature order(339699..339701,339717..339722,339750..339752,
339756..339761,339765..339773,339777..339782,
339786..339788)
/locus_tag="Avi_5338"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
misc_feature 339840..340562
/locus_tag="Avi_5338"
/note="Putative sugar-binding domain; Region: Sugar-bind;
pfam04198"
/db_xref="CDD:202929"
gene 340737..341726
/gene="rbsB"
/locus_tag="Avi_5339"
/db_xref="GeneID:7380698"
CDS 340737..341726
/gene="rbsB"
/locus_tag="Avi_5339"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(ribose)"
/protein_id="YP_002547196.1"
/db_xref="GI:222106405"
/db_xref="GeneID:7380698"
/translation="MERRRFLQSATALALSAPAVLAVTRAQAENKKFRIALIPGLTTD
AFYITMHKGAEAAAAAIGAQIIFQGAPDFNPVTQVPVLDAVIAKKPDAILIAPTDTTQ
LVQPLKKAADAGIPMITVDTFIGTGDYQTGAGDGDFPLSYIASDNVLGGEIAARSLAL
AIGDKGKVYVSNVKPGVSTTDQREQGFKSEMAKHPGITVLETQFNDNDANKAASQLQA
VYARNPDLAGVFGANLFSGLGSANGVQQAGQSGTIKVVAFDAPGSVVDNLKSGLIDFA
IAQHPAEIGYYGVISAYAHLTGQSIPTKIGTGFTVINKSNVTDPAVARFIYAE"
misc_feature 340836..341678
/gene="rbsB"
/locus_tag="Avi_5339"
/note="Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems; Region:
PBP1_ABC_sugar_binding_like_2; cd06310"
/db_xref="CDD:107305"
misc_feature 340839..341633
/gene="rbsB"
/locus_tag="Avi_5339"
/note="Periplasmic binding protein domain; Region:
Peripla_BP_4; pfam13407"
/db_xref="CDD:205585"
misc_feature order(340872..340874,341097..341099,341283..341285,
341511..341513,341571..341573)
/gene="rbsB"
/locus_tag="Avi_5339"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107305"
gene 341848..342894
/gene="rbsC"
/locus_tag="Avi_5341"
/db_xref="GeneID:7380699"
CDS 341848..342894
/gene="rbsC"
/locus_tag="Avi_5341"
/codon_start=1
/transl_table=11
/product="ribose ABC transporter permease"
/protein_id="YP_002547197.1"
/db_xref="GI:222106406"
/db_xref="GeneID:7380699"
/translation="MAPENTHAVAPQADHADVTKTIVQRIAQLRAWVFLAALIVIFEI
WAQTDFGGTFVGSPFNWQSVAVFAVAPLLLAIGQTFVIISGGIDLSAGFIMGLAAVVA
AHATNYFGVFMPLPAAMVCGILVAILAATIPGIINGLLISRLNVPPFIGTLGMFGVAR
GAAFLLAGGTTVPVKNSYFAALGNGRIEGIPYLVLVTAVFVLFMHYILSQTRFGQHNY
AIGANAQASRRAGIDIKGHILRLYILSSVCAGLGGALYAARFTAGAAQAGEPLLLDSV
AAVVIGGASLFGGSGTIIGTVAGALVIAVIQYGLVFMNVEPFWQFIAVGVVIIISVLI
DQAQRRFSGVKHAE"
misc_feature 342073..342852
/gene="rbsC"
/locus_tag="Avi_5341"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 342520..342576
/gene="rbsC"
/locus_tag="Avi_5341"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 342884..343633
/locus_tag="Avi_5342"
/db_xref="GeneID:7380700"
CDS 342884..343633
/locus_tag="Avi_5342"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_002547198.1"
/db_xref="GI:222106407"
/db_xref="GeneID:7380700"
/translation="MLSNVAPLLEVRNFSRYFGAVKALDNCSLTVGAGEVVALAGDNG
AGKTTMIKAISGVYSPTSGEILIDGSPVAFSSPQDAREKGIETIYQDLALADNLSIGA
NIFLGREPMKRAFGFIPVLDRKAMAKAAADTMALLDFHVKRLDAPVSNFSGGQRQAVA
IGRAVYWNAKILIMDEPTAALGVPEQRKVVALIKSLKAQGRGVIFISHNLQDIFAVSD
RIVVLRRGVVAGTRNIADTNHDEVVKLMIGG"
misc_feature 342899..343615
/locus_tag="Avi_5342"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivG; COG0411"
/db_xref="CDD:30760"
misc_feature 342908..343615
/locus_tag="Avi_5342"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 343004..343027
/locus_tag="Avi_5342"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(343013..343018,343022..343030,343151..343153,
343406..343411,343505..343507)
/locus_tag="Avi_5342"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 343142..343153
/locus_tag="Avi_5342"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 343334..343363
/locus_tag="Avi_5342"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 343394..343411
/locus_tag="Avi_5342"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 343418..343429
/locus_tag="Avi_5342"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 343493..343513
/locus_tag="Avi_5342"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 343674..344402
/gene="cbr"
/locus_tag="Avi_5343"
/db_xref="GeneID:7380701"
CDS 343674..344402
/gene="cbr"
/locus_tag="Avi_5343"
/codon_start=1
/transl_table=11
/product="carbonyl reductase"
/protein_id="YP_002547199.1"
/db_xref="GI:222106408"
/db_xref="GeneID:7380701"
/translation="MWELDGKAILVTGASGGIGGATVKKLKEAGARVYAAGRSRDELD
KLAAQTGCETLIFDLTSEDEIRRAVEDLPLWGVVNCGGFGGEIATPQETDISIFDKAI
AINVRGALLVTKYASRSMIKEGKGGSIVNVSSQAALAALPGHVSYASSKAALDSITRV
SALELGKYKIRVNSVNPTVVMTEMSAFYWGRPEIGEPFLEKMPLGRWATVDDIAKPIR
FLLSDEASMITGVSLPIDGGFTAC"
misc_feature 343674..344399
/gene="cbr"
/locus_tag="Avi_5343"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 343674..344396
/gene="cbr"
/locus_tag="Avi_5343"
/note="short chain dehydrogenase; Provisional; Region:
PRK07060"
/db_xref="CDD:180817"
misc_feature order(343710..343712,343716..343721,343725..343727,
343782..343790,343911..343919,344067..344075,
344112..344114,344124..344126,344202..344213)
/gene="cbr"
/locus_tag="Avi_5343"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(343986..343988,344073..344075,344112..344114,
344124..344126)
/gene="cbr"
/locus_tag="Avi_5343"
/note="active site"
/db_xref="CDD:187535"
gene complement(344389..345795)
/gene="dapE"
/locus_tag="Avi_5344"
/db_xref="GeneID:7380702"
CDS complement(344389..345795)
/gene="dapE"
/locus_tag="Avi_5344"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547200.1"
/db_xref="GI:222106409"
/db_xref="GeneID:7380702"
/translation="MTDLETVLAHVDDNLPSSLETLFDLVRIPSISTDPAYSPHCRKA
ADFLATYLSGLGFAASVRDTSGHPMVVAHHEGQTADCPHVLFYGHYDVQPVDPLNLWQ
NDPFDPAIRDGSTGEKIITGRGTSDDKGQLLTFIEALRAFKETKGGLPVRVTILFEGE
EESGSPSLQPFLEAHAQELKADFAMVCDTGMWDTQTPAICASLRGLVGEEITIKAASR
DLHSGGYGGVAANPLHVLSDIMAGLHDQTGAVTLPGFYDGVEETPPDIKAVWADLEKT
QPAFLTDIGLSVPSGEKGRSVLELLWARPTAEINGMSGGYTGKGFKTVIAAEAMAKVS
FRLVGKQDPQKIRDSFRAYVTSKLPSDCRVEFQAEGASPAIQLPYDSPILATAKAALS
QEWPKPAIVVGGGGSIPIVGSFQSMLGMDSLLVGFSLDDDCVHSPNEKYNLTSFHKGT
RSWVRILHGLSDEAINRL"
misc_feature complement(344410..345795)
/gene="dapE"
/locus_tag="Avi_5344"
/note="hypothetical protein; Validated; Region: PRK09104"
/db_xref="CDD:181650"
misc_feature complement(344416..345741)
/gene="dapE"
/locus_tag="Avi_5344"
/note="Uncharacterized M20 Dipeptidases; Region:
M20_dipept_like_3; cd05680"
/db_xref="CDD:193555"
misc_feature complement(order(344491..344493,345232..345234,
345310..345315,345415..345417,345529..345531))
/gene="dapE"
/locus_tag="Avi_5344"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193555"
misc_feature complement(order(344485..344496,344578..344583,
344788..344790,344794..344796,344800..344802,
344821..344844,344857..344880,344893..344898,
344905..344907,344986..344988,345064..345066,
345073..345078,345085..345087,345091..345099,
345115..345135,345139..345156,345166..345168,
345172..345174,345184..345186))
/gene="dapE"
/locus_tag="Avi_5344"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:193555"
gene complement(345838..347010)
/gene="mdeA"
/locus_tag="Avi_5346"
/db_xref="GeneID:7380703"
CDS complement(345838..347010)
/gene="mdeA"
/locus_tag="Avi_5346"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547201.1"
/db_xref="GI:222106410"
/db_xref="GeneID:7380703"
/translation="MSDALDYLQQASLITAHDEANAYDAVVPPIVQTSLFTFSDYDEM
VATYRGEKLRPVYSRGLNPTVRIFEDMLAKLEGAEDALAFASGMATISSTVLSFVEPG
DRVVAVRHLYPDAYRFFETMLKRMRIEVTYVDGRDEDAVAKALPGAKLLYLESPTSWV
MDAHDVGALAALAKQHGVLSMIDNSWASPVFQKPLSLGVDLVLHSASKYLGGHSDVVA
GVVAGPKELINRIRNETLPYLGGKLSPFDAWLLIRGMRTLPIRMKAHEASALEIAHRL
QALDIVEKVCHPALNNGLPPGLHGTSGLFSFIFKDVIHIQTFCDHLKLFKLGVSWGGH
ESLVVPGDVVANQKAPPSFADAFGVDPLSVRLHVGLEGTEALWSDLQAAMAAARTD"
misc_feature complement(345844..347010)
/gene="mdeA"
/locus_tag="Avi_5346"
/note="hypothetical protein; Provisional; Region:
PRK05968"
/db_xref="CDD:168320"
misc_feature complement(345856..346941)
/gene="mdeA"
/locus_tag="Avi_5346"
/note="CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of...; Region:
CGS_like; cd00614"
/db_xref="CDD:99738"
misc_feature complement(order(346051..346053,346270..346275,
346279..346281,346312..346314,346360..346362,
346366..346368,346390..346392,346651..346653,
346660..346662,346675..346677,346744..346749,
346753..346758,346834..346836,346840..346842,
346897..346902,346906..346917))
/gene="mdeA"
/locus_tag="Avi_5346"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99738"
misc_feature complement(order(346360..346362,346387..346392,
346396..346398,346462..346464,346549..346551,
346675..346677,346747..346755))
/gene="mdeA"
/locus_tag="Avi_5346"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:99738"
misc_feature complement(order(346387..346392,346396..346398,
346453..346455,346462..346464,346675..346677,
346747..346755))
/gene="mdeA"
/locus_tag="Avi_5346"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99738"
misc_feature complement(346387..346389)
/gene="mdeA"
/locus_tag="Avi_5346"
/note="catalytic residue [active]"
/db_xref="CDD:99738"
gene complement(347007..347735)
/locus_tag="Avi_5347"
/db_xref="GeneID:7380704"
CDS complement(347007..347735)
/locus_tag="Avi_5347"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_002547202.1"
/db_xref="GI:222106411"
/db_xref="GeneID:7380704"
/translation="MFPKRALSQDPHIAALPPLDRVQQVSGAMVGYINKAGLKRGDRL
PTERELMNALGVGRSTVREVIGRFQALGVVETRKGSGTYLLQPVSAATVHMPLMLETV
NLRDALLQTLEVRRGIEVEAGALAAMRRTEEDLRIIEEKLDEMERVHLAKGTSGKEDL
AFHVAIYDATHNPLFKQLLEQMREAFERFWHKPFDRPDFARRSFPFHRTLFSAIADQD
SEGARRETLKILAVVEEDIKEMSK"
misc_feature complement(347010..347705)
/locus_tag="Avi_5347"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:32369"
misc_feature complement(347487..347675)
/locus_tag="Avi_5347"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature complement(order(347490..347501,347505..347510,
347538..347540,347547..347552,347556..347570,
347592..347597,347601..347603,347670..347672))
/locus_tag="Avi_5347"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature complement(347043..347408)
/locus_tag="Avi_5347"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:203742"
gene 347965..349584
/gene="dppA"
/locus_tag="Avi_5349"
/db_xref="GeneID:7380705"
CDS 347965..349584
/gene="dppA"
/locus_tag="Avi_5349"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(dipeptide)"
/protein_id="YP_002547203.1"
/db_xref="GI:222106412"
/db_xref="GeneID:7380705"
/translation="MKFRLFGGAVAVSVAALLTSPAVAFEGRSVVAPDCNYGGKIKSI
VATDEHTVTFSMCSPDPAFKAKAAFVPFGIQPAKHIEEAGPKKKLLDNPIGTGPFKLE
SWNRGDSITMTRNENYWGAKPAFDKLVFRWNQSGAGRLNELRSGTVDEITNISPDDFD
SVKNDPDLQFLPQESPNILYLGMVNTAKPFDNEKVRQAIAMGIDRQRIVDNFYPKGSV
VASHFTPCSLPNGCAGKDWYGFDASAAKKLLADAGYPNGFKTKIYYRDVFRAYLPEPS
VVAVEFQTQLKKNLGIDAEVVPIESGKFIDDTSAGRIDGLYLLGWGADYPHVTNFLDY
HFGKTSKMFGTTFPEITEGLTKGGTIAETKTAEPIYAAVNDAIRQHVPMVPIVHGAAA
YAARATLKNAIVRPFGSPLLQDSNPGKDTLVFMQNAEPISLYCGDETDGETLNACTPI
TEALLDYAKDSGDIVPALATSCDANADSTVWTCKLRTGVKFTDGSDFTANDVVVSWAA
GIDASNPAHVGNTGSFDYFSSLWGGLMNAKK"
misc_feature 348073..348987
/gene="dppA"
/locus_tag="Avi_5349"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
misc_feature <348076..349167
/gene="dppA"
/locus_tag="Avi_5349"
/note="The substrate-binding domain of an ABC-type
nickel/oligopeptide-like import system contains the type 2
periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like; cl01709"
/db_xref="CDD:212263"
misc_feature 349225..>349554
/gene="dppA"
/locus_tag="Avi_5349"
/note="The substrate-binding domain of an ABC-type
nickel/oligopeptide-like import system contains the type 2
periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like; cl01709"
/db_xref="CDD:212263"
misc_feature 349354..>349482
/gene="dppA"
/locus_tag="Avi_5349"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene 349915..350994
/gene="dppB"
/locus_tag="Avi_5350"
/db_xref="GeneID:7380706"
CDS 349915..350994
/gene="dppB"
/locus_tag="Avi_5350"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547204.1"
/db_xref="GI:222106413"
/db_xref="GeneID:7380706"
/translation="MLGYAAKRLLISIPVIFGILIVTFALARLIPGDPCKAMLGEKAT
AETCAGFITRYGFDKPLPTQFFIYMGDMLRGDFGTSVRFSRPVTQIIIERLPMTAELA
VLALITATVIGVGLGVIAARRHNSAADVGTMIVANAGISMPVFWLGLMLAYLFGVMLR
GTPFWLPPSGRLSAGVNSIPFYEVWHWQLAAESGWSKVLEFFSNFYILNALITGNWTV
FWDAIRHMILPVMALSTIPMAVIARMTRSSLLDVLGRDYVRTARAKGVPEKRVVSEHA
LGNALLPVVTILGLQMGALLSGAVLTETVFGLSGVGRMLVEAIFARDYPVVQAFTVMI
AVSYVAINLLVDLSYTYLDPRIRPQ"
misc_feature 349915..350985
/gene="dppB"
/locus_tag="Avi_5350"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 350197..>350397
/gene="dppB"
/locus_tag="Avi_5350"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature 350326..350370
/gene="dppB"
/locus_tag="Avi_5350"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature <350572..350955
/gene="dppB"
/locus_tag="Avi_5350"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(350605..350607,350821..350823,350845..350847,
350854..350856,350905..350907)
/gene="dppB"
/locus_tag="Avi_5350"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(350620..350625,350629..350631,350635..350637,
350644..350649,350653..350655,350665..350670,
350677..350679,350728..350730,350770..350775,
350782..350784,350803..350814,350821..350826,
350851..350856,350905..350910,350917..350922,
350926..350931,350938..350943,350950..350955)
/gene="dppB"
/locus_tag="Avi_5350"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(350680..350718,350734..350739,350749..350751)
/gene="dppB"
/locus_tag="Avi_5350"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 351003..351956
/gene="dppC"
/locus_tag="Avi_5351"
/db_xref="GeneID:7380707"
CDS 351003..351956
/gene="dppC"
/locus_tag="Avi_5351"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547205.1"
/db_xref="GI:222106414"
/db_xref="GeneID:7380707"
/translation="MTRLNSVSASAAEAILEDGLIGEPVAQWRRTWGRLLRLRSGQVG
LFIIGMLILIAIFAPVLAPYDPDQVLIGVEQVKRREPPCVHLLGCDASRPQHIMGIDG
NARDSFSRILYGTRVSLVIGLTTVTCALFFGVLLGAIAGYFRGWVDNIIMRIMDVILG
FPSLLLAIAIVAVLGPGIRNALLAISIVSVPAYARVTRASVLSVKTFDFVAATRVLGG
SKWRILFQRVLPNAITPIVVLATLGVATAILDAAGLSFLGLGAQPPTPEWGTMLGAAR
NEIFSAPHLVFFPGLAIMLTVLGFNLLGDGLRDALDPRLHT"
misc_feature 351072..351950
/gene="dppC"
/locus_tag="Avi_5351"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:31366"
misc_feature 351081..351206
/gene="dppC"
/locus_tag="Avi_5351"
/note="N-terminal TM domain of oligopeptide transport
permease C; Region: OppC_N; pfam12911"
/db_xref="CDD:205142"
misc_feature 351348..351923
/gene="dppC"
/locus_tag="Avi_5351"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(351393..351398,351405..351410,351423..351425,
351453..351464,351468..351497,351504..351509,
351513..351515,351564..351569,351573..351575,
351579..351581,351588..351593,351597..351599,
351609..351614,351621..351623,351672..351674,
351714..351719,351726..351728,351747..351758,
351765..351770,351810..351815,351873..351878,
351885..351890,351894..351899,351906..351911,
351918..351923)
/gene="dppC"
/locus_tag="Avi_5351"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(351471..351515,351747..351764)
/gene="dppC"
/locus_tag="Avi_5351"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(351513..351515,351549..351551,351765..351767,
351804..351806,351813..351815,351873..351875)
/gene="dppC"
/locus_tag="Avi_5351"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(351624..351662,351678..351683,351693..351695)
/gene="dppC"
/locus_tag="Avi_5351"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 351928..352980
/locus_tag="Avi_5352"
/db_xref="GeneID:7380708"
CDS 351928..352980
/locus_tag="Avi_5352"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(oligopeptide)"
/protein_id="YP_002547206.1"
/db_xref="GI:222106415"
/db_xref="GeneID:7380708"
/translation="MPSIRGSIREDSMTRPILEIRDLTTHFQTRSGTARAVDKVSLSL
EAGQTLCVVGESGCGKSITALSIMGLVPYPGKIIGGEVLLDGADLRSMSPMDLSKVRG
NRISMIFQDPSSSLNPVHTVGRQIAEAYRLHKNMGKREAEDAAIAMLKAVGIPDPQRR
MKAYPHEMSGGMAQRVMIAMALACQPEVLIADEPTTALDVTIQAQILDLMRDLQRDFG
TAIILITHDLGVVAEMADHVAVMYAGQVVELADVRTLFKSPKHPYTQALLRSVPVLGE
SPDMLEVIDGRVPQLTHLPQGCLFAPRCTARREANEPRCLTEVPALTEIHKAHHCRCW
LNEPATLAGEQEVQPA"
misc_feature 351976..352938
/locus_tag="Avi_5352"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppD; COG0444"
/db_xref="CDD:30793"
misc_feature 351976..352677
/locus_tag="Avi_5352"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 352087..352110
/locus_tag="Avi_5352"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(352096..352101,352105..352113,352255..352257,
352501..352506,352603..352605)
/locus_tag="Avi_5352"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 352246..352257
/locus_tag="Avi_5352"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 352429..352458
/locus_tag="Avi_5352"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 352489..352506
/locus_tag="Avi_5352"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 352513..352524
/locus_tag="Avi_5352"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 352591..352611
/locus_tag="Avi_5352"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 352660..352932
/locus_tag="Avi_5352"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene 352977..353951
/locus_tag="Avi_5354"
/db_xref="GeneID:7380709"
CDS 352977..353951
/locus_tag="Avi_5354"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(oligopeptide)"
/protein_id="YP_002547207.1"
/db_xref="GI:222106416"
/db_xref="GeneID:7380709"
/translation="MSALIEMNGIKMAFAVTGGAFQRVKGYVNAVNDVSLTIERGRTL
GVVGESGCGKSTLARIVVGLFAPTAGEIIFDDKQIAGPGMGVDFASSRRIQIVFQDPY
SSLDPRLPIGDSIAEGLVIHGIGDKASRRKAVADMLELVGLPPQAADRYPHEFSGGQR
QRIGIARALILQPEFLVCDEPTSALDVSVQAQILNLLKRLKTQLNLTMMFISHNLAVV
RHIADDVVVMYLGHAVELGPVEALFTNPRHPYTKALLSATLIADPDRRGERIKLVGEM
PSPLNPPTGCPFHPRCTLANDRCKAEMPLMTMTDTVQVACHAVEEGRA"
misc_feature 352977..353939
/locus_tag="Avi_5354"
/note="dipeptide transporter ATP-binding subunit;
Provisional; Region: dppF; PRK11308"
/db_xref="CDD:183084"
misc_feature 353037..353687
/locus_tag="Avi_5354"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 353118..353141
/locus_tag="Avi_5354"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(353127..353132,353136..353144,353271..353273,
353511..353516,353613..353615)
/locus_tag="Avi_5354"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 353262..353273
/locus_tag="Avi_5354"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 353439..353468
/locus_tag="Avi_5354"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 353499..353516
/locus_tag="Avi_5354"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 353523..353534
/locus_tag="Avi_5354"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 353601..353621
/locus_tag="Avi_5354"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 353670..353930
/locus_tag="Avi_5354"
/note="oligopeptide/dipeptide ABC transporter, ATP-binding
protein, C-terminal domain; Region: oligo_HPY; TIGR01727"
/db_xref="CDD:211684"
gene 353972..355117
/locus_tag="Avi_5355"
/db_xref="GeneID:7380710"
CDS 353972..355117
/locus_tag="Avi_5355"
/codon_start=1
/transl_table=11
/product="proline dipeptidase"
/protein_id="YP_002547208.1"
/db_xref="GI:222106417"
/db_xref="GeneID:7380710"
/translation="MSSLLSAPKISMEERVIRLETLRKTMAEKDIGAVLIGSTESLRY
FTGLAWHGSERLVGAVITASDLVYVVPGFERSRVETLPHLPGDIRVWEEDESSAALVA
SFLPHASTLAVDDFVPLFVYNALKREIVADRLIDGGPLLRGQRLRKSAAEIAIIQYAM
NLTLDVQRKAHAMIRPGIAASEVVRFIDDEHRRLGASNGSTFCIVSFGETTSLPHGAD
DEQYYQPGDVVLVDTGCRIDGYNSDITRTYMLEEPTAEFARIWDIERAAQQAVFDAAR
IGATCGSLDDAARDVLTRHGLGPDYQLPGLPHRAGHGLGLEGHEEPYIVRGNTVRLDA
GMCFSCEPMIVLPGQFGLRLEDIIYMTSDGPNWFTQPAKGPTEPFSG"
misc_feature 353990..355090
/locus_tag="Avi_5355"
/note="Xaa-Pro aminopeptidase [Amino acid transport and
metabolism]; Region: PepP; COG0006"
/db_xref="CDD:30356"
misc_feature 354023..354409
/locus_tag="Avi_5355"
/note="Creatinase/Prolidase N-terminal domain; Region:
Creatinase_N; pfam01321"
/db_xref="CDD:201727"
misc_feature 354428..355066
/locus_tag="Avi_5355"
/note="A family including aminopeptidase P, aminopeptidase
M, and prolidase. Also known as metallopeptidase family
M24. This family of enzymes is able to cleave amido-,
imido- and amidino-containing bonds. Members exibit
relatively narrow substrate specificity...; Region:
APP_MetAP; cl00279"
/db_xref="CDD:206953"
misc_feature order(354614..354616,354665..354667,354698..354700,
354905..354907,354992..354994,355034..355036)
/locus_tag="Avi_5355"
/note="active site"
/db_xref="CDD:29969"
gene 355234..355950
/locus_tag="Avi_5356"
/db_xref="GeneID:7380711"
CDS 355234..355950
/locus_tag="Avi_5356"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_002547209.1"
/db_xref="GI:222106418"
/db_xref="GeneID:7380711"
/translation="MIDDHDNSNLALNKLRELLSSGRFSAGEKLPTERSLCEELCLGR
RSVRRALEVLEAEGLIWRRQGSGTFAGARPDAFDDYVGALVAGTDPLEVMEVRLRLEP
QLAQLAALRANATDVQAMYDLVAKIGASKDADGRELWDGALHRKIAQCAGNSLFLALF
DVMNRTRQDPAWQNIREQARAFAQTRPVTHGQHLAIIDRIASHDPIGAGEAMRVHLLT
LQESLIRITSIDTAVHVAEA"
misc_feature 355267..355917
/locus_tag="Avi_5356"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:32369"
misc_feature 355270..355440
/locus_tag="Avi_5356"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(355324..355326,355330..355335,355357..355371,
355375..355380,355387..355389,355417..355422,
355426..355437)
/locus_tag="Avi_5356"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 355579..355881
/locus_tag="Avi_5356"
/note="This entry represents the C-terminal ligand binding
domain of many members of the GntR family; Region: FCD;
smart00895"
/db_xref="CDD:197963"
gene 356002..357510
/gene="dppA"
/locus_tag="Avi_5357"
/db_xref="GeneID:7380712"
CDS 356002..357510
/gene="dppA"
/locus_tag="Avi_5357"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(dipeptide)"
/protein_id="YP_002547210.1"
/db_xref="GI:222106419"
/db_xref="GeneID:7380712"
/translation="MKLNRVLTALLVTAAFAAPVMAADLKIGLSEDPDVLDPAQSRTF
VGRIVYTAMCDKLVDVSPDLKIIPQLATGWAWSEGGKVLTMTLRQGVKFHDETPLNAE
AVVATIQRNMTMPESRRKSELASVEKVEAIGSDTVKFTLKAPDSTLLAQLSDRAGMIV
SPKAAKELGANFGSHPVCAGPFKFVERVQQDRIVLEKFADYWNKDQIFINKLTYLPIV
DSTVRLANLRSGDLDMIERVAPTDAASIKSDGKLDFEQAVGVGYMAMYVNIGNGPRAN
NPLGKDKRLRQAFSLAIDREALNQIVFEGTALAGNQPFPPVSPWYDKRIPVPARDVEK
AKALVKAAGFDRVPIELQVSNSATMLQMMQVVQSMVAEAGFDVTLKTMEFATMLNEQT
TGNYQISRSDWSGRVDPDGNLHQFVTCKGGINDTKYCNPAVDTLLNEARQSTDDAVRK
QKYDAADEILNDDLPIIYLGHQSWLWASSKKITGFVPSPDGMIRLTGMQKAN"
misc_feature 356071..357486
/gene="dppA"
/locus_tag="Avi_5357"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_5; cd08511"
/db_xref="CDD:173876"
misc_feature 356194..357267
/gene="dppA"
/locus_tag="Avi_5357"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene 357611..358558
/gene="dppB"
/locus_tag="Avi_5358"
/db_xref="GeneID:7380713"
CDS 357611..358558
/gene="dppB"
/locus_tag="Avi_5358"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547211.1"
/db_xref="GI:222106420"
/db_xref="GeneID:7380713"
/translation="MPTFLARRLLLAIPTLLIISVFVFSLQKLLPGDPVLIMAGEDRD
PAVMESLREKYHLNDPMPVQYVMWLGAALKGDLGMSLRTNQPVLELIGEKLPVTCQLA
IMSMIFALTLGIPLGILAAVKKNTLIDYLASVVALSGLSIPNFWLGIMLILLVSVRLG
WLPASGYQPFFSDPWMSMKTMLMPSFVLGNALAASIMRHTRSAMLGVLSSDYVRTARA
KGMPERSVILSHSFRNAVLPIVTLTALLFGELLAGAVLTEQIFTIPGFGKLIVDAVFN
RDYAVVQGVVLCTAIGFILMNLMADCLYLLLNPRMRASL"
misc_feature 357611..358552
/gene="dppB"
/locus_tag="Avi_5358"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 357893..358504
/gene="dppB"
/locus_tag="Avi_5358"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(357941..357946,357953..357958,357971..357973,
358004..358015,358019..358048,358055..358060,
358064..358066,358181..358186,358190..358192,
358196..358198,358205..358210,358214..358216,
358226..358231,358238..358240,358289..358291,
358331..358336,358343..358345,358364..358375,
358382..358387,358421..358426,358454..358459,
358466..358471,358475..358480,358487..358492,
358499..358504)
/gene="dppB"
/locus_tag="Avi_5358"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(358022..358066,358364..358381)
/gene="dppB"
/locus_tag="Avi_5358"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(358064..358066,358166..358168,358382..358384,
358415..358417,358424..358426,358454..358456)
/gene="dppB"
/locus_tag="Avi_5358"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(358241..358279,358295..358300,358310..358312)
/gene="dppB"
/locus_tag="Avi_5358"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 358555..359424
/gene="dppC"
/locus_tag="Avi_5359"
/db_xref="GeneID:7380714"
CDS 358555..359424
/gene="dppC"
/locus_tag="Avi_5359"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547212.1"
/db_xref="GI:222106421"
/db_xref="GeneID:7380714"
/translation="MTAMSEAATGPSPLSGRGWRKLKANKAALVGLGIILFFLVVALL
APLLPIADPLASSWSAIRKAPSLAHPFGTDDLGRDIMSRMIWGARASLAAGIFSVAIA
TILGVPLGILSGYFGGWIDMVISRITEAFLAMPFLIMAIALAAFLGPSLTNAMIAIGL
SALPTFIRLSRGQVLAVKTEDYVEGARSIGLGHVAIMSRYIFPNILAPVLVQATLTVA
TAIIAEASLSFLGLGQQPPAPSWGSMLNVAKNFLSQAPWMAIWPGGAIFLVVIGFNLL
GDGLRDVLDPRSS"
misc_feature 358609..359415
/gene="dppC"
/locus_tag="Avi_5359"
/note="dipeptide transporter; Provisional; Region:
PRK10913"
/db_xref="CDD:182833"
misc_feature 358816..359373
/gene="dppC"
/locus_tag="Avi_5359"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(358864..358869,358876..358881,358894..358896,
358924..358935,358939..358968,358975..358980,
358984..358986,359035..359040,359044..359046,
359050..359052,359059..359064,359068..359070,
359080..359085,359092..359094,359143..359145,
359185..359190,359197..359199,359218..359229,
359236..359241,359281..359286,359314..359319,
359326..359331,359344..359349,359356..359361,
359368..359373)
/gene="dppC"
/locus_tag="Avi_5359"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(358942..358986,359218..359235)
/gene="dppC"
/locus_tag="Avi_5359"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(358984..358986,359020..359022,359236..359238,
359275..359277,359284..359286,359314..359316)
/gene="dppC"
/locus_tag="Avi_5359"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(359095..359133,359149..359154,359164..359166)
/gene="dppC"
/locus_tag="Avi_5359"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 359472..361256
/gene="ggt"
/locus_tag="Avi_5360"
/db_xref="GeneID:7380715"
CDS 359472..361256
/gene="ggt"
/locus_tag="Avi_5360"
/codon_start=1
/transl_table=11
/product="gamma-glutamyltransferase"
/protein_id="YP_002547213.1"
/db_xref="GI:222106422"
/db_xref="GeneID:7380715"
/translation="MTDFTTRPEILGTFGVVTSTHWIASAVGMAILEKGGNAFDAAVA
TGFVLQVVEPHLCGPGGDMPAVIYSKNKDKVEVICAQGPAPAGATIEHYTEEGLDLIP
GDGLLATVIPGAFDGWMLMLRDYGTMSVRDVLEPAIYYAEKGHPVLARVSATIKGLGS
FFEQHWPTSHQTWLPGGFAPEPNSLFTNPVLAETWKRIIVEAEAKSGREAQIEAARDA
FYRGFVAEQIDRYVQSTAVMDASGACHKGVLTADDMAQWSATIEEPQTFDYHGWTVAK
TGPWGQGPVLLQALSLLKGFDIAAMASDGPDFVHTVTEAMKLAYADREIYYGDPAFAT
VPMQHLLSEAYATERRALIGETASFDLVPGRVAGFEDQYARTMEMLGATSKTGAVFEP
TMAHLSEKRGDTVHIDVIDRDGNMVSVTPSGGWLQSSPIVPGLGFCLNSRAQMFWLKP
GLPTSLQPGKRPRTTLTPSIALYEGRPTLSFGTPGGDQQDQWQLSFFLRYVHHGFNLQ
AAIDRPLFHTSHFPGSFYPRTREPGSLMVEKNFPEATIAELARRGHALTVAEPWSIGR
LTAARRDADGLLRAAATPRLMQAYAVGR"
misc_feature 359490..361151
/gene="ggt"
/locus_tag="Avi_5360"
/note="Gamma-glutamyltransferase [Amino acid transport and
metabolism]; Region: Ggt; COG0405"
/db_xref="CDD:30754"
misc_feature 359556..361163
/gene="ggt"
/locus_tag="Avi_5360"
/note="Gamma-glutamyltranspeptidase; Region:
G_glu_transpept; pfam01019"
/db_xref="CDD:201554"
gene 361301..363136
/gene="moaD"
/locus_tag="Avi_5362"
/db_xref="GeneID:7380716"
CDS 361301..363136
/gene="moaD"
/locus_tag="Avi_5362"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002547214.1"
/db_xref="GI:222106423"
/db_xref="GeneID:7380716"
/translation="MSAQTPAPILSVEGLNTAFLVDGRWKTVVRDVSFDVMAGETLAI
VGESGSGKSVTSLSIMRLLAEQSSRTTGRIMLEGRDLMALSRKAMRNVRGRDMAMIFQ
EPMTSLNPIFTIGRQISEALIAHGGLSKGEARAQTIHLLDKVRIPNAKARFDDYPHQF
SGGMRQRVMIAMALALKPKILIADEPTTALDVTIQGQILDLIKQLQAEEGMSVLFITH
DMGVVAEIADRTMVMFRGDVVETGTTSDVFHKGRHRYTRALLSAVPRLGEMGDAAWPR
RFPVVDMATGERVEPTVVADTVERGLTPVLQVRDLVTRFDIKGGLFSRKTGVIHAVEN
VSFDLFQGETLSLVGESGCGKSTTGRSVMRLIDPLSGSVQLDGYDVLSLRCPDINRMR
RSIQMIFQDPFASLNPRMTVGASVAEPITTHRLATHRQARDKAADLMERVGLSADMAN
RYPHEFSGGQRQRIAIARALALDPKVIVADESVSALDVSIKAQVCNLLMDLQASLKIA
FLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFSNPQHAYTRKLMKAVPVPDPSR
RNIRRDLDSEELKSPVRPLGYQPPKRRYELVSPGHMVMRDEARVG"
misc_feature 361325..363124
/gene="moaD"
/locus_tag="Avi_5362"
/note="glutathione transporter ATP-binding protein;
Provisional; Region: PRK10261"
/db_xref="CDD:182342"
misc_feature 361325..362026
/gene="moaD"
/locus_tag="Avi_5362"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 361436..361459
/gene="moaD"
/locus_tag="Avi_5362"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(361445..361450,361454..361462,361604..361606,
361850..361855,361952..361954)
/gene="moaD"
/locus_tag="Avi_5362"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 361595..361606
/gene="moaD"
/locus_tag="Avi_5362"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 361778..361807
/gene="moaD"
/locus_tag="Avi_5362"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 361838..361855
/gene="moaD"
/locus_tag="Avi_5362"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 361862..361873
/gene="moaD"
/locus_tag="Avi_5362"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 361940..361960
/gene="moaD"
/locus_tag="Avi_5362"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 362015..>362101
/gene="moaD"
/locus_tag="Avi_5362"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
misc_feature 362213..362914
/gene="moaD"
/locus_tag="Avi_5362"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 362345..362368
/gene="moaD"
/locus_tag="Avi_5362"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(362354..362359,362363..362371,362498..362500,
362738..362743,362840..362842)
/gene="moaD"
/locus_tag="Avi_5362"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 362489..362500
/gene="moaD"
/locus_tag="Avi_5362"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 362666..362695
/gene="moaD"
/locus_tag="Avi_5362"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 362726..362743
/gene="moaD"
/locus_tag="Avi_5362"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 362750..362761
/gene="moaD"
/locus_tag="Avi_5362"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 362828..362848
/gene="moaD"
/locus_tag="Avi_5362"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 362903..>363001
/gene="moaD"
/locus_tag="Avi_5362"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:203916"
gene complement(363164..364318)
/gene="gsp"
/locus_tag="Avi_5363"
/db_xref="GeneID:7380717"
CDS complement(363164..364318)
/gene="gsp"
/locus_tag="Avi_5363"
/codon_start=1
/transl_table=11
/product="glutathionylspermidine synthetase"
/protein_id="YP_002547215.1"
/db_xref="GI:222106424"
/db_xref="GeneID:7380717"
/translation="MKRITIAERSDWRDKARAVGFGFHEMYGEPYWVDDAAYVFSLEE
IETRIETPSQELHDMCMDLIGDIVENEEVLDRLAIPDDLRDVVRRSWQRQDRHLYGRF
DLAYDGEGPAKLLEYNADTPTSVFETAYFQFNWLTDQQALGALPADADQYNLLQESLV
EAFEQFPKQSIFHFAAMTENEEDRGTTVYLMDCALQAGHRVELLDIGDIGIDAEGRFT
DLQDRVIDQCFKLYPWEFMLREPFSRQLARSGDVFIEPAWKSLLSNKGLLPLLWQRHP
NHPNLLPSFFADDPAASSLGDYVRKPLLSREGENVTLFQGGTESLVSPGGYGEEGFIV
QAYAPLFESQAGFAVLGSWIVGDRACALGIREDRSRITANLSRFVPHVIV"
misc_feature complement(363167..364318)
/gene="gsp"
/locus_tag="Avi_5363"
/note="Glutathionylspermidine synthase [Amino acid
transport and metabolism]; Region: Gsp; COG0754"
/db_xref="CDD:31097"
gene complement(364320..364922)
/locus_tag="Avi_5364"
/db_xref="GeneID:7380718"
CDS complement(364320..364922)
/locus_tag="Avi_5364"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547216.1"
/db_xref="GI:222106425"
/db_xref="GeneID:7380718"
/translation="MRRRLSGRRPPILALGTIAASSMLLSGCGEDAPTERTFTSVDQC
ISQGMDREVCQTAYQDAVKAHMANAPRFDGMAACEAEYGAKQCVQQTASNTDGSNGSG
SFFMPFMAGYLLSSTINNIGDYNRYRREATQSSSYGGGSFGGGGTPIYRNRSGQTVTI
NKGRDTILAPSSQGSKPANVNTRTVSRQGFGGRSSFSFGG"
misc_feature complement(364362..364811)
/locus_tag="Avi_5364"
/note="Protein of unknown function (DUF1190); Region:
DUF1190; pfam06693"
/db_xref="CDD:191584"
gene complement(364933..365334)
/locus_tag="Avi_5365"
/db_xref="GeneID:7380719"
CDS complement(364933..365334)
/locus_tag="Avi_5365"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547217.1"
/db_xref="GI:222106426"
/db_xref="GeneID:7380719"
/translation="MLHYMAGLPAFLGYFFIGIAAYGVFAAIYTWLTPHKEVELIRAG
NLAAVTAFLGALMGFSLPLASAAANSVSMIDYILWAFIGILVQIFAFFIANFTMKDLH
EKITAGDIAAGLWGGGIALIVGILNAACMTY"
misc_feature complement(<365017..365334)
/locus_tag="Avi_5365"
/note="Predicted membrane protein [Function unknown];
Region: COG3766"
/db_xref="CDD:33561"
misc_feature complement(365137..365295)
/locus_tag="Avi_5365"
/note="Domain of Unknown Function (DUF350); Region:
DUF350; pfam03994"
/db_xref="CDD:202847"
gene complement(365362..366021)
/locus_tag="Avi_5366"
/db_xref="GeneID:7380720"
CDS complement(365362..366021)
/locus_tag="Avi_5366"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547218.1"
/db_xref="GI:222106427"
/db_xref="GeneID:7380720"
/translation="MLGWFSRRKTEKPMQKELGPLGAVIGGALDLDFLSLEADALGAQ
PAMPLPQSGAFIIAAYGEVRLDAASVLSRYYDENHQMIQVMSPSGKPGDGVDDISFYR
PWDSVVPVSQSEWSRWTGPSGMIGAPSYDADGILFNRFWGEGPERAETVQFVEEVEDG
ETSRSIHQSCMLYYRPLGSTQEMLLINVERDLDPSQAQAGRSVEFLIGYGIGAADVRR
V"
misc_feature complement(365368..366021)
/locus_tag="Avi_5366"
/note="Protein of unknown function (DUF2491); Region:
DUF2491; pfam10679"
/db_xref="CDD:192654"
gene 366301..366747
/locus_tag="Avi_5367"
/db_xref="GeneID:7380721"
CDS 366301..366747
/locus_tag="Avi_5367"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547219.1"
/db_xref="GI:222106428"
/db_xref="GeneID:7380721"
/translation="MEECLEPWTLTSLTRLFAADPEALGDVDVTVPQSGDVICVTLKE
KGDMDVFVAVSGERDILASIVLVPCDDVPNRADFERMVLKTHKFVPLSSFGITIIDGE
EWYELFGSLSTRSRAETVVEEVAILAANAVDAAVMIDEWKNGEMAA"
misc_feature 366316..366729
/locus_tag="Avi_5367"
/note="Uncharacterized protein conserved in bacteria
(DUF2170); Region: DUF2170; pfam09938"
/db_xref="CDD:150593"
gene 366720..367481
/locus_tag="Avi_5368"
/db_xref="GeneID:7380722"
CDS 366720..367481
/locus_tag="Avi_5368"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547220.1"
/db_xref="GI:222106429"
/db_xref="GeneID:7380722"
/translation="MEERGDGGMSTWAKIFTAIRGGVNEVAEAAADSQSMRILDQELR
DAEQSLRRARSDLAGIMASNKSVMRRLEEARAKELKDSDSARAAVNAGRMDLAQGLAQ
RIATIRGEIQRDEEELNRLLPRQQQMLRTIQDTEARITQMKREVENVKANESLLRAQS
AISHSQSGINTRLGSAVESLERIKKRQEITAGRIEAGAELAALENGSDLDRQLREAGI
GGSSQSADDVLKQLMAPSGSSAQVLLPAPAEKLER"
misc_feature 366753..367430
/locus_tag="Avi_5368"
/note="PspA/IM30 family; Region: PspA_IM30; pfam04012"
/db_xref="CDD:112811"
gene complement(367573..368919)
/locus_tag="Avi_5370"
/db_xref="GeneID:7380723"
CDS complement(367573..368919)
/locus_tag="Avi_5370"
/codon_start=1
/transl_table=11
/product="dicarboxylate carrier protein"
/protein_id="YP_002547221.1"
/db_xref="GI:222106430"
/db_xref="GeneID:7380723"
/translation="MNIEILSIGLLVAIFIIATIQPINMGVLAFGCTFVLGSLIIGMK
PADIFAGFPADLFLTLVAVTYLFAIAQINGTIDWLVEKSVRMVRGRVGWIPWVMFLVA
AIITGFGALGPAAVAILAPVALSFAVQYRIHPVLMGLMVIHGAQAGGFSPISIYGGIT
NQIVAKAGLPFAPTSLFLSSFFFNLAIAVLIFFIFGGLSILKQRSSVKGPLPELHPEG
ISASIKGHGGTPAKPFREHAYGTAADTQSKVRLTTEKVTTLIGLTALGVGALVFKFNV
GLVAITVAVLLALLSPTTQKAAIDKVSWSTVLLISGIITYVGVMEKAGTIDYVAHGIS
SLGMPLLVALLLCFTGAIVSAFASSTALLGAIIPLAVPFLLQGHISAVGVVAAIAIST
TIVDTSPFSTNGALVVANAPDDQRDKVMRQMLIYSALIALIGPVIAWLVFVVPGII"
misc_feature complement(368473..368919)
/locus_tag="Avi_5370"
/note="Dicarboxylate carrier protein MatC N-terminus;
Region: MatC_N; pfam07158"
/db_xref="CDD:115789"
misc_feature complement(367801..>368019)
/locus_tag="Avi_5370"
/note="Anion permease ArsB/NhaD. These permeases have
been shown to translocate sodium, arsenate, antimonite,
sulfate and organic anions across biological membranes in
all three kingdoms of life. A typical anion permease
contains 8-13 transmembrane helices...; Region:
ArsB_NhaD_permease; cl15356"
/db_xref="CDD:213135"
gene complement(369048..370562)
/gene="fadD"
/locus_tag="Avi_5371"
/db_xref="GeneID:7380724"
CDS complement(369048..370562)
/gene="fadD"
/locus_tag="Avi_5371"
/note="catalyzes the formation of malonyl-CoA from
malonate and CoA"
/codon_start=1
/transl_table=11
/product="malonyl-CoA synthase"
/protein_id="YP_002547222.1"
/db_xref="GI:222106431"
/db_xref="GeneID:7380724"
/translation="MSNHLFDAIKAAARPDSPFILTNGGRIWTYDDAIALSGQIAGAI
AKLGIQPGDRIAVQIEKSPEALILYLACLRAGAVYLPLNTAYTLAELDYFIGDAEPKL
VVVSSSALEPLRKVAEPYGARVETLNADGSGSLIDLARTEPTDFANVARASDDLAAIL
YTSGTTGRSKGAMLTHDNLLSNALTLRDFWRVTSDDRLIHALPIFHTHGLFVATNVTL
LSGASMILLPKFDPDEVLSLMPNATLLMGVPTFYVRLLQSQKLDREITANIRLFISGS
APLLAETHVEFGKRTGKAILERYGMTETNMNTSNPYDGDRVPGTVGLPLPGVTVRITD
PANGTILPAGETGSIEIKGPNVFKGYWRMPEKTAAEFTADGFFISGDLGKIDENGYVH
IVGRGKDLVISGGYNIYPKEVESEIDQLEGVVESAVIGVPHPDFGEGVTAIVICKPGF
SLDEKAILNALQDRLARYKQPKRIIFLEDLPRNTMGKVQKNVLRQQYADLYAAA"
misc_feature complement(369057..370562)
/gene="fadD"
/locus_tag="Avi_5371"
/note="malonyl-CoA synthase; Validated; Region: PRK07514"
/db_xref="CDD:181011"
misc_feature complement(369279..370478)
/gene="fadD"
/locus_tag="Avi_5371"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
misc_feature complement(<369072..369161)
/gene="fadD"
/locus_tag="Avi_5371"
/note="Domain of unknown function (DUF4009); Region:
DUF4009; pfam13193"
/db_xref="CDD:205374"
gene complement(370659..372056)
/locus_tag="Avi_5372"
/db_xref="GeneID:7380725"
CDS complement(370659..372056)
/locus_tag="Avi_5372"
/codon_start=1
/transl_table=11
/product="malonyl-CoA decarboxylase"
/protein_id="YP_002547223.1"
/db_xref="GI:222106432"
/db_xref="GeneID:7380725"
/translation="MAGTSFLSDLLSGVTERGRALLFSGSKARDRVVDTDIETLCEML
LSSRGEASGMAIAAEILDRWSRFNAAEAVQFLHMLSDRFGAEAAALDKAIDAYRTDKS
PMAVIALHNAAEPRRQELLRRLNLAPNGTQKLVRMRERLLETKEDRADLGAVDTDFAH
LFSSWFNRGFLTLQPIDWTTPAHILEKIIKYEAVHEIAGWEELRRRLAPADRRCFAFF
HPRLRDDPLVFVEVALTRSIPSAIADVLDESRDHIGADTATTAVFYSISNCQDGLRGI
SFGNFLIKQVVEDLRRDLPGLKEFVTLSPVPGFARWISKIRDPKSGFPLSPEDRNTLV
LLDDPTWPEDKARADAVERILLPLAARYFITERTPDNRPVDPVARFHLGNGARLERLN
FLGDRSVKAMRQAHGLMVNYLYKLEDIETNHEALAQRGEVAASPAVKALQGKIEPILP
EKPKDIKKAESLSGS"
misc_feature complement(370812..371825)
/locus_tag="Avi_5372"
/note="Malonyl-CoA decarboxylase (MCD); Region: MCD;
pfam05292"
/db_xref="CDD:114040"
gene 372224..372874
/locus_tag="Avi_5373"
/db_xref="GeneID:7380726"
CDS 372224..372874
/locus_tag="Avi_5373"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_002547224.1"
/db_xref="GI:222106433"
/db_xref="GeneID:7380726"
/translation="MSENAGRWLRDEIENAILSHEFAPGLRLDETLLANRFGVSRTPV
REALMQLNAIGLIEIRPRRGAVVIDPGPHRIYQMFEVMAELEGLAGSLAARRLDEQSK
EAILEAHKRCEISAGAGDSDSYYYDNEAFHKAIYAASRSEFLEEQCNQLHRRLRPYRR
LQLRVRNRLSTSFSEHGAIVEALFRGDVEETRRLLGMHVAVQGERFSDLVANMAAR"
misc_feature 372248..372424
/locus_tag="Avi_5373"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature 372251..372838
/locus_tag="Avi_5373"
/note="phosphonate utilization associated transcriptional
regulator; Region: phnR_burk; TIGR03338"
/db_xref="CDD:132381"
misc_feature order(372308..372310,372311..372316,372338..372352,
372356..372361,372368..372370,372398..372403,
372407..372418)
/locus_tag="Avi_5373"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 372515..372823
/locus_tag="Avi_5373"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:203742"
gene 372952..375291
/locus_tag="Avi_5374"
/db_xref="GeneID:7380727"
CDS 372952..375291
/locus_tag="Avi_5374"
/codon_start=1
/transl_table=11
/product="two component response regulator"
/protein_id="YP_002547225.1"
/db_xref="GI:222106434"
/db_xref="GeneID:7380727"
/translation="MSKHNAKSMTAPLDAPIGRSDLIARIVHDISPVIVVTAPAGFGK
SWFLQALIAALGADAALWTVYDRPPISPDLSRLEQGHRYAIALRPGESLPGLDRLRLY
GQVLDLDGEDLLLPQGGLSRRDWDRCAGWPVLLSPGIECQDALAGQSRLSTFLAEDCL
AGLDDADMSALLVCGENWPSWLAMRLPPLAHPATAACQRIKSALPGALEQEMLRRLAD
PFQAADPSGVLAQALRCNPRNLEAVILRLLACNQGKDALSLFCKAGGWFLYYRLGHEA
FLRVVTGLEAGCDDLPEELAISRAFLMIKAGDVAWAMQFLVQRFGVEMRNVLAVFSGD
SALSLRVRLFRITVLIYEDVTPTDRLLEALFEIGGELSLDEPEQRGSFYNAMLEFFLR
LRRYEEANGMAEKAMKAYRQADCPILCFYIALHQSVLSLLTSDFNRMGQSLRLAEDML
AKTGFDSPGDRRFLDLLTACMAYENGEPAVLLGFLQEEMAAMIAGELWPSLADVAIYY
GSHALSVHMSTRVALRFLDGWSVYQPMNRQFRLSLDVRKAQILQSGNCWGDATRLLAP
LRAGFDRVWIESAQEALARLAGRDEITLALSWLRQISYERPAFPHLDRKLEVMLTNPH
LLVRQEIAVSLWLAFVLRQTQQNSRARTLLRQVFERCASHGGLTALSEEWLFLDHLLQ
DKRIVEFVMAATPARAILRRLDRGRHSSLAAARTRLTQQELKILTMLAEGASNKLIAR
NSGISEPTVKFHLKNVYRKLGCSRRHEAIAAAKALGWVR"
misc_feature <375046..375285
/locus_tag="Avi_5374"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:32379"
misc_feature 375103..375267
/locus_tag="Avi_5374"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature order(375106..375114,375151..375159,375181..375186,
375190..375195,375199..375213,375244..375246)
/locus_tag="Avi_5374"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature order(375139..375141,375145..375147,375151..375153,
375244..375252,375259..375261)
/locus_tag="Avi_5374"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 375466..376494
/locus_tag="Avi_5375"
/db_xref="GeneID:7380728"
CDS 375466..376494
/locus_tag="Avi_5375"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547226.1"
/db_xref="GI:222106435"
/db_xref="GeneID:7380728"
/translation="MILHVVEQIVRRVFSVVMVLFVLSLMIFALARVVPGDPARMALG
PSASQEQVTALAREMGLDQPVLVQYGRYITNALQGDLGQSLSSHRPVIQDVVEFLPAT
LELVVVTVILDLLIAIPLGVITARHRNTWIDNIGRLFSMVGVTVPSFLFAIGLQLFAA
NFLPGWPLLGQVNFDLHAPAGPTGFLLVDSLIHGRADVFVDALQHLIFPALALAMAGI
GQITRIMRSAMIENQRKDHVLTLLSFGVPDYVVTFRYLLKLSSVAPLTIMGLEFASLI
GNAFVVEMVFGWGGFASYGLNAILQKDLNALMAVVLISGLFFILANLVIDLIVSLIDP
RLRFRGGQ"
misc_feature 375550..376485
/locus_tag="Avi_5375"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 375814..376446
/locus_tag="Avi_5375"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(375820..375825,375838..375840,375871..375882,
375886..375915,375922..375927,375931..375933,
376111..376116,376120..376122,376126..376128,
376135..376140,376144..376146,376156..376161,
376168..376170,376219..376221,376261..376266,
376273..376275,376294..376305,376312..376317,
376363..376368,376396..376401,376408..376413,
376417..376422,376429..376434,376441..376446)
/locus_tag="Avi_5375"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(375889..375933,376294..376311)
/locus_tag="Avi_5375"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(375931..375933,376096..376098,376312..376314,
376357..376359,376366..376368,376396..376398)
/locus_tag="Avi_5375"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(376171..376209,376225..376230,376240..376242)
/locus_tag="Avi_5375"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 376491..377351
/locus_tag="Avi_5376"
/db_xref="GeneID:7380729"
CDS 376491..377351
/locus_tag="Avi_5376"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002547227.1"
/db_xref="GI:222106436"
/db_xref="GeneID:7380729"
/translation="MMSEQDLSAGYMSWYRFSRNPAALIGALIVISVVVMAILAPLIT
PFPSHIGSVVDFRHRHNPPNLTNWFGTDKVGRDLFTRTIFGFRVSLLLVFGVLGISVP
IGAVLGLCAGYFGGWTERLITGFTNIMLAIPPLVMALAIGNVLEPNLINAMIAITLLW
WTWHARLVYRVTVSIAGEDFIEAARLAGAGPIHILFREILPNCIAVISVKTTLDAAFV
ILFGATLSFLGFGVKPPTPDLGSMVADGRQFLPEKWWEVLAPGGAIFYATLGFNLLGD
GLRDMFDVEA"
misc_feature 376491..377339
/locus_tag="Avi_5376"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:31366"
misc_feature 376509..376682
/locus_tag="Avi_5376"
/note="N-terminal TM domain of oligopeptide transport
permease C; Region: OppC_N; pfam12911"
/db_xref="CDD:205142"
misc_feature 376746..377240
/locus_tag="Avi_5376"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(376794..376799,376806..376811,376824..376826,
376854..376865,376869..376898,376905..376910,
376965..376970,376974..376976,376980..376982,
376989..376994,376998..377000,377010..377015,
377022..377024,377073..377075,377115..377120,
377127..377129,377148..377159,377166..377171,
377211..377216)
/locus_tag="Avi_5376"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(376872..376913,377148..377165)
/locus_tag="Avi_5376"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(376950..376952,377166..377168,377205..377207,
377214..377216)
/locus_tag="Avi_5376"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(377025..377063,377079..377084,377094..377096)
/locus_tag="Avi_5376"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 377354..379021
/locus_tag="Avi_5377"
/db_xref="GeneID:7380730"
CDS 377354..379021
/locus_tag="Avi_5377"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(dipeptide)"
/protein_id="YP_002547228.1"
/db_xref="GI:222106437"
/db_xref="GeneID:7380730"
/translation="MADPLLCVQDLTVAFSGYGRVNRVLHDISFTIDAGERVALIGET
GSGKSVTSKAILGTLPNNAKVEAGSIAYRGRQLLTLPSGERNKLKGTAFSIIMQDPLS
SFNPVFRIGRHLEDVMHYADRNQGIYDTPKGRKQRIFEVLRKVQLGDVERVFNAWPFE
LSGGMRQRVLIALALLHQPDLLIADEPGTALDVTTQDEILRLINRLVSEDGLSLLMIT
HNLGVVRQTADRVIVMQHGRIVEHGPLKSVFQAPQQAYTRELMAAVPPLYGEGVVDQP
VSDKAPIITLSNVRKLYAKRALFGQKRGHLAVNNINLQVNEGEIFGLAGESGSGKTTL
ARMMMNLLQPSDGEIVVRGTPRDGALRLSQIVYQNPGTSLNPKRTVEQILAVPLAHVG
LDKGQRKARMTELLDLVRLPANFVSKYPHELSGGQKQRVAIARALAANPQIIILDEPT
SALDVSVQKTVIELLLDLRAKLGLTYVIISHDLSLMRNFCSRIVIMYKGEIVEHGTPA
EVFATARHPYTRALIAAIPVLTDAQEALKPTISEEERGRFLVHATGL"
misc_feature 377354..378940
/locus_tag="Avi_5377"
/note="ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only]; Region: COG1123"
/db_xref="CDD:31320"
misc_feature 377366..378082
/locus_tag="Avi_5377"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 377477..377500
/locus_tag="Avi_5377"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(377486..377491,377495..377503,377645..377647,
377906..377911,378008..378010)
/locus_tag="Avi_5377"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 377636..377647
/locus_tag="Avi_5377"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 377834..377863
/locus_tag="Avi_5377"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 377894..377911
/locus_tag="Avi_5377"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 377918..377929
/locus_tag="Avi_5377"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 377996..378016
/locus_tag="Avi_5377"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 378065..>378154
/locus_tag="Avi_5377"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
misc_feature 378200..378868
/locus_tag="Avi_5377"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 378326..378349
/locus_tag="Avi_5377"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(378335..378340,378344..378352,378455..378457,
378692..378697,378794..378796)
/locus_tag="Avi_5377"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 378446..378457
/locus_tag="Avi_5377"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 378620..378649
/locus_tag="Avi_5377"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 378680..378697
/locus_tag="Avi_5377"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 378704..378715
/locus_tag="Avi_5377"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 378782..378802
/locus_tag="Avi_5377"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 378857..>378988
/locus_tag="Avi_5377"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene 379047..380600
/locus_tag="Avi_5378"
/db_xref="GeneID:7380731"
CDS 379047..380600
/locus_tag="Avi_5378"
/codon_start=1
/transl_table=11
/product="hydantoinase"
/protein_id="YP_002547229.1"
/db_xref="GI:222106438"
/db_xref="GeneID:7380731"
/translation="MYRLGIDVGGTNTDAVVMQGGKVLSGIKAPTSEDVTTGVVEAME
GAIKAAGIDRSLVTNVMIGTTHFTNAVIERKHMTPVAAIRLGLPATACLPPAIDWPED
LKPVVGKHGYMVRGGYEFDGREISPLDEDEIKRIAGEIRANNLKAAAVTCVFGPINAA
MEQRTKAILQEHCPGLPVVMSTDIGRIGLLERESAAIMNASLLELAYKTVRAFGEALK
SAGLTCPFHITQNDGTLMAAETVKDFPVLTFASGPTNSMRGAAFLTGVQEAIVVDIGG
TTSDVGALHLGFPRQAATVVDVGGVRTNFRMPDVFSIGLGGGSLVRGDAETVTVGPQS
VGYRITSEAKVFGGATLTATDIAVAAGHADVGDKSKVADVSPALAKAALARIHQMLEN
AIERSRVSPEPIPVIAVGGGSILMPDKLGDFQIIRPENFSVANAVGAAIAQISGEVDR
VFALENGLTRELCLKQAEEEATKNAVAAGADPTTIQVIEREDVPLAYLPGNATRIHVK
VVGEMGGQA"
misc_feature 379047..>380525
/locus_tag="Avi_5378"
/note="N-methylhydantoinase A/acetone carboxylase, beta
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism];
Region: HyuA; COG0145"
/db_xref="CDD:30494"
misc_feature 379053..379565
/locus_tag="Avi_5378"
/note="Hydantoinase/oxoprolinase N-terminal region;
Region: Hydant_A_N; pfam05378"
/db_xref="CDD:147519"
misc_feature 379620..380390
/locus_tag="Avi_5378"
/note="Hydantoinase/oxoprolinase; Region: Hydantoinase_A;
pfam01968"
/db_xref="CDD:202069"
gene 380597..381721
/locus_tag="Avi_5379"
/db_xref="GeneID:7381485"
CDS 380597..381721
/locus_tag="Avi_5379"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547230.1"
/db_xref="GI:222106439"
/db_xref="GeneID:7381485"
/translation="MSAIISPKDYFDPKDLWIFDRDDLTSLEIGAGILGTGGGGNPYI
GKLRARQLLDEGYTLSVLPHQKIHDDALCVSVGGIGAPVVGIERLREGREGLRCIRAL
EAHLDMTIDAIVCEEIGGSNSMEPLVVAALTGVPVIDCDGMGRAFPEMQMTTFSIYGH
SSTPSAMCDVHGNVVLFQHAVSELWHERMARACVVAQGGASTLASAPMTGAFVKQFGI
PNSYTQAVSLGQAVRLAQKNHDDPIEAICKKENGKKLFTGKISDLKRHLRGGFVRGEV
QLSGIDAHNGETGSVLIQNENLVFFHDGEMECCVPDLILVLDVDSGEAITTEMLRYGQ
RVAIVALPCHGLLRSREALDVVGPKAFGLDGIVYTPMKGS"
misc_feature 380642..381709
/locus_tag="Avi_5379"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3535"
/db_xref="CDD:33337"
misc_feature 380732..381709
/locus_tag="Avi_5379"
/note="Protein of unknown function (DUF917); Region:
DUF917; pfam06032"
/db_xref="CDD:203380"
gene 381823..382800
/locus_tag="Avi_5380"
/db_xref="GeneID:7381486"
CDS 381823..382800
/locus_tag="Avi_5380"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547231.1"
/db_xref="GI:222106440"
/db_xref="GeneID:7381486"
/translation="MAQAALREHGPVTVVAADEVDDDTLCISVFMMGAPTVMLEKLPS
GAEVLKALHELEQFLGRKAGAILCVEAGGLNSTIPYMVAAVTGLPLVDGDGMGRAFPE
LQMVSFTLHGISASPLVLADDKGNSSLFSAVSNLWTEKMARAVTIQMGGAALVAAYAM
SGKQMKQALLHGTMTQIRTIGETILTERARSRHAGAALREKLGGTHLFTGRVVDVERA
TTGGFARGKLILRGVDRFAGQRFAVHFQNEFLLAEGENGETVWATPDLICALDADMGL
PVTTEQMRYGLMVEFTGISADPQWHTPEGLALAGPGYFGYGDSAKPLSA"
misc_feature 381823..382791
/locus_tag="Avi_5380"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3535"
/db_xref="CDD:33337"
misc_feature 381823..382791
/locus_tag="Avi_5380"
/note="Protein of unknown function (DUF917); Region:
DUF917; pfam06032"
/db_xref="CDD:203380"
gene 382841..384415
/locus_tag="Avi_5381"
/db_xref="GeneID:7381487"
CDS 382841..384415
/locus_tag="Avi_5381"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(dipeptide)"
/protein_id="YP_002547232.1"
/db_xref="GI:222106441"
/db_xref="GeneID:7381487"
/translation="MNATQTLRHLAVVLAMGTAIVAPHVAMAKTSTVMNVTQVFGTID
PAKITDYTQYLAAVNLYDGLTTVDSTGKIIPELAESWDVSSDNLTYTFHLRKDATFQD
GSPVEAKDVVYTVQRLLAINKGPAYLFATLINPDNVKAVDAHTVTITLNKVYAPFLTT
TPLLLVINEDAVKAASKQPWGEDVVGEKSMGAGAYVLSSWQRGSEMVISRYEKYYAGW
PTNPIDEVRFVQTNDEATVKALATSGQLGISSTTQANETYDALAKTDGYVVQTTPTAT
GFYLKLNTKATPTDDVHVRRALQYATDYKTIQTQIMTGDTLAGPLAQVFKDAYLDTLK
APEFDLEKAKAELAQSKYAGKPIKLTLTYVAGLSFEEDIALLMQSNLSQIGVDVDIKP
EPWNRITELAAKPETTPAATQVFYGPTYPSPDSVFYVQYHSKSAGTWASMEWLQDAEV
DKLIDEARSTTDSAKQNAIYKQIQQAISDEAPDVNLLTKVQKVAFSKCISGYKFVPMQ
SWDYNFHDLTWTCPAK"
misc_feature 382958..384346
/locus_tag="Avi_5381"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_7; cd08512"
/db_xref="CDD:173877"
misc_feature 383054..384151
/locus_tag="Avi_5381"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene complement(384434..384910)
/locus_tag="Avi_5382"
/db_xref="GeneID:7381488"
CDS complement(384434..384910)
/locus_tag="Avi_5382"
/codon_start=1
/transl_table=11
/product="two-component system regulatory protein"
/protein_id="YP_002547233.1"
/db_xref="GI:222106442"
/db_xref="GeneID:7381488"
/translation="MNFPFDLASEAQILIIDDEPANIALLERLLRRERFDRIASTTDP
REATALFTKHKADIILLDLLMPHLDGFALLDQFTRLIGPDDFIPILVLTADVTTETRR
RALSLGAKDFLVKPIDTVETVLRIVNLLETRFLFKALKTATLENLAAQPNDFPGLK"
misc_feature complement(384533..384874)
/locus_tag="Avi_5382"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature complement(384521..384871)
/locus_tag="Avi_5382"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(384563..384568,384575..384577,
384632..384634,384701..384703,384725..384727,
384857..384862))
/locus_tag="Avi_5382"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(384725..384727)
/locus_tag="Avi_5382"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(384701..384709,384713..384718))
/locus_tag="Avi_5382"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(384560..384568)
/locus_tag="Avi_5382"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(384907..387261)
/locus_tag="Avi_5383"
/db_xref="GeneID:7381489"
CDS complement(384907..387261)
/locus_tag="Avi_5383"
/codon_start=1
/transl_table=11
/product="Signal transduction histidine kinase"
/protein_id="YP_002547234.1"
/db_xref="GI:222106443"
/db_xref="GeneID:7381489"
/translation="MTDIPAKTVVSAHSRFRFLNQPLAVKGLIVIALPLACLLIALGS
VFLADRESRKAENYVRVTFAIQQDILELHALLAEGASGVRGYLLTRDETFLAPYKKAV
TELPAVFAAMRPLIIDAEQLERLNRMEPLVDKKLKGLASLMQGSVSNNQIPEALRQTL
IANKAFLDELRLQIAEMRLREDALLAQRTAKADEIRALSQRITLLGAIAGVIGCIGAI
VLMSKGIVRRVDRLKQAASRLAQGQSLRLAEHATDEIGELSSALEEASRLLTAREEAL
RESEERFRLLVDGVHDYGIFGLDADGTVVSWNAGAERIKGYRADEIIGQHFSRFYPLE
HRDTRPLQEMAQAAAFGRVEDEGWRLRKDGSRFWANVVMTALRDKQGQLRGFSKITRD
VTDRKRTEEALLTARRDAERASQAKSEFLSRMSHELRTPLNSVLGFAQILDMDIEDRD
MRESLAQILRAGRHLLSLIDEVLDIARIEAGRMELLIEPVGLDDIVTEAIALAAPLAE
PKQLTIRVEMEAAGQTIVAVDRRRFLQVLLNLLSNAVKFNRDGGEIRLSAQLLTNTMI
AIDIADTGCGIADVDRDRLFKPFERLGADRNATTGTGLGLALSVNLMQAMDGDLFLTE
SDATGSVFSIHIPVSHAPYAVAEVVKTDEKRAVASGPTGKATVLCIEDNLVNLNLIEN
LVRRRLKTRIIPAMLGGLGLTLAFEHRPDLVLLDVDLPDMNGLSVLAALRSDPRTQTT
PVVVISADATEKTRMLAMEKGATHYMTKPLDVRRLMKTLDEVLT"
misc_feature complement(386692..387099)
/locus_tag="Avi_5383"
/note="CHASE3 domain; Region: CHASE3; pfam05227"
/db_xref="CDD:203215"
misc_feature complement(386083..386388)
/locus_tag="Avi_5383"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(385354..386382)
/locus_tag="Avi_5383"
/note="phosphate regulon sensor kinase PhoR; Region:
phoR_proteo; TIGR02966"
/db_xref="CDD:163090"
misc_feature complement(order(386170..386172,386182..386184,
386263..386274,386311..386313,386329..386331,
386341..386343))
/locus_tag="Avi_5383"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(386143..386145,386149..386151,
386230..386235,386242..386244,386269..386271,
386281..386283))
/locus_tag="Avi_5383"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(385831..386022)
/locus_tag="Avi_5383"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(385846..385848,385858..385860,
385867..385869,385879..385881,385888..385890,
385900..385902,385948..385950,385957..385959,
385969..385971,385978..385980,385990..385992,
386002..386004))
/locus_tag="Avi_5383"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(385984..385986)
/locus_tag="Avi_5383"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(385354..385659)
/locus_tag="Avi_5383"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(385366..385368,385372..385377,
385390..385392,385396..385398,385444..385455,
385531..385536,385540..385542,385546..385548,
385552..385554,385624..385626,385633..385635,
385645..385647))
/locus_tag="Avi_5383"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(385633..385635)
/locus_tag="Avi_5383"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(385447..385449,385453..385455,
385534..385536,385540..385542))
/locus_tag="Avi_5383"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature complement(384913..385191)
/locus_tag="Avi_5383"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(384955..384960,384967..384969,
385024..385026,385090..385092,385114..385116))
/locus_tag="Avi_5383"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(385114..385116)
/locus_tag="Avi_5383"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(385090..385098,385102..385107))
/locus_tag="Avi_5383"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(384952..384960)
/locus_tag="Avi_5383"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(387261..387911)
/gene="narL"
/locus_tag="Avi_5384"
/db_xref="GeneID:7381490"
CDS complement(387261..387911)
/gene="narL"
/locus_tag="Avi_5384"
/codon_start=1
/transl_table=11
/product="two component response regulator"
/protein_id="YP_002547235.1"
/db_xref="GI:222106444"
/db_xref="GeneID:7381490"
/translation="MTKARILIADDHDLARSGIISVLSGAPDLEVVAEARDGLEAITL
AAQLLPDIALLDVRMTPMDGLTAATEIRRVSPSTRIMMLTMHDSLDYLEAAVKAGASG
YALKDVRRDTLLRMIRAVLDGQEFFDTGLVRRMLTRVSRTSPAEDAISQLTTREREIL
QEVARGATNKEIARRLSIAPGTVKVHVERIIAKLRVGDRTQAAVLAAQAGLVEGEA"
misc_feature complement(387312..387899)
/gene="narL"
/locus_tag="Avi_5384"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:32379"
misc_feature complement(387549..387893)
/gene="narL"
/locus_tag="Avi_5384"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(387591..387596,387603..387605,
387660..387662,387720..387722,387744..387746,
387879..387884))
/gene="narL"
/locus_tag="Avi_5384"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(387744..387746)
/gene="narL"
/locus_tag="Avi_5384"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(387720..387728,387732..387737))
/gene="narL"
/locus_tag="Avi_5384"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(387588..387596)
/gene="narL"
/locus_tag="Avi_5384"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(387312..387458)
/gene="narL"
/locus_tag="Avi_5384"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature complement(order(387315..387317,387348..387362,
387366..387371,387375..387380,387402..387410,
387447..387455))
/gene="narL"
/locus_tag="Avi_5384"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature complement(order(387312..387317,387408..387410,
387414..387416,387420..387422))
/gene="narL"
/locus_tag="Avi_5384"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene complement(387918..389003)
/locus_tag="Avi_5386"
/db_xref="GeneID:7381491"
CDS complement(387918..389003)
/locus_tag="Avi_5386"
/codon_start=1
/transl_table=11
/product="two component sensor kinase"
/protein_id="YP_002547236.1"
/db_xref="GI:222106445"
/db_xref="GeneID:7381491"
/translation="MTTATDPEHLASPIQELRTLYREAEARASRLRLIVETRASLDQY
PLPRAITDITGLIGSFCGGAAIHLRDPADQHQTIADNAMASKDGRVLVIFEDQAIARM
GDEDKTSLQIVADLVAAAVFADDREQEREALLLMLAEREKQLAQLVAAILSTQERERA
HIAYDLHDGVAQTLVSLLHHLQALEADPGLTAVLANKVDQCSEIARLAIQDIRHAIAD
LRPAELDDLGLPAAISAKLDTVDEIACRLDNRLPDGRLPQAIEIVLYRVAQEAITNAR
KHAGCQNLHVQLRIDADHVVLEANDDGCGFPLAGAQGDATPVRGFGIGLSAMQERLSL
VNGTLDIISAANQGTRLIARVPLIDKG"
misc_feature complement(387933..>388559)
/locus_tag="Avi_5386"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG4585"
/db_xref="CDD:34223"
misc_feature complement(388344..388532)
/locus_tag="Avi_5386"
/note="Histidine kinase; Region: HisKA_3; pfam07730"
/db_xref="CDD:203743"
misc_feature complement(387939..388214)
/locus_tag="Avi_5386"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(387951..387953,387957..387962,
387975..387977,387981..387983,388029..388040,
388086..388091,388095..388097,388101..388103,
388107..388109,388173..388175,388182..388184,
388194..388196))
/locus_tag="Avi_5386"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(388182..388184)
/locus_tag="Avi_5386"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(388032..388034,388038..388040,
388089..388091,388095..388097))
/locus_tag="Avi_5386"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 389202..389666
/locus_tag="Avi_5387"
/db_xref="GeneID:7381492"
CDS 389202..389666
/locus_tag="Avi_5387"
/codon_start=1
/transl_table=11
/product="hypothetical signal peptide protein"
/protein_id="YP_002547237.1"
/db_xref="GI:222106446"
/db_xref="GeneID:7381492"
/translation="MQKILLAFGVTAGLSVSSFAAPAMAQECAPVTQQQVEKLFDRWN
ASLATLDPEKVVANYEDDAVLLATLSNQPRLTQEERRAYFVDFLKKKPQGVVDNRTIK
LGCNTAIDTGVYTFTLGDGTKVPARYTFTYDYDGGKWLISSHHSSAMPERTS"
misc_feature 389241..389657
/locus_tag="Avi_5387"
/note="Nuclear transport factor 2 (NTF2-like) superfamily.
This family includes members of the NTF2 family,
Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases,
and the beta subunit of Ring hydroxylating dioxygenases.
This family is a classic example of...; Region: NTF2_like;
cl09109"
/db_xref="CDD:211454"
gene complement(389727..391001)
/locus_tag="Avi_5388"
/db_xref="GeneID:7381493"
CDS complement(389727..391001)
/locus_tag="Avi_5388"
/codon_start=1
/transl_table=11
/product="glucose/galactose transporter"
/protein_id="YP_002547238.1"
/db_xref="GI:222106447"
/db_xref="GeneID:7381493"
/translation="MAGIQTGAPQTAHAGASRSYTGPLIALTSLFFLWGFITCLNDIL
IPHLKNVFQLNYTQTMLIQLCFFGAYFIVSLPAGALVKRISYKWGIVTGLLVAAIGCA
LFIPAASLRVYGLFLGALFVLAAGVTILQVAANPYVTVLGAPETASSRLTLTQAFNSL
GTTVAPIFGAFLILSSATAAVENATPEQMDALRMAEAAAVKFPYLMLAIAFLVLAAIF
AALKLPAVEAEEDAKSSDVSGSAWGYRHLVLGAVGIFLYVGAEVSIGSFLVNFMAEPS
IAGLPEQTAAHYVSYFWGGAMIGRFIGSAVMRYMDDGKVLAFNAVAAGILLLVTVLTT
GHVAMWCVLSIGFFNSIMFPTIFSLALKGLGRHTSQGSGILCLAIVGGALLPLVQGGL
ADTVGIHLAFLMPILCYVYIAYYGALGSRTAA"
misc_feature complement(389736..390962)
/locus_tag="Avi_5388"
/note="Fucose permease [Carbohydrate transport and
metabolism]; Region: FucP; COG0738"
/db_xref="CDD:31081"
misc_feature complement(<390483..390932)
/locus_tag="Avi_5388"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(390516..390518,390534..390539,
390546..390551,390585..390587,390594..390599,
390606..390611,390618..390623,390768..390773,
390777..390782,390792..390794,390801..390806,
390813..390815,390864..390869,390873..390881,
390888..390890))
/locus_tag="Avi_5388"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(391433..392470)
/locus_tag="Avi_5390"
/db_xref="GeneID:7381494"
CDS complement(391433..392470)
/locus_tag="Avi_5390"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002547239.1"
/db_xref="GI:222106448"
/db_xref="GeneID:7381494"
/translation="MELNIRNIRKDFNATAALHELSLDIRSGELIALVGPSGSGKTTL
LRLIAGLERPSAGQIFFGDDDASRKTVQERQVGFVFQHYALFKHMTVLENVGFGLTVR
PKSSRPPKAEIRKRALELLDFVQLSGLEKRYPAQLSGGQRQRVALARAMAIEPKVLLL
DEPFGALDAQVRKDLRRWLREIHDRTGHTTVFVTHDQEEALELADRVVVMSQGRIEQV
GTADDVYDNPAAPFVHRFIGESSALPVRIESGEIWLDDRPTGLKSEGNGNATLFFRPQ
EVEIVDGCGGCFAGTVISSRRLSGTRRLELELGGARHLAEIDVPVDHPAATRTGISFR
PKRWKVYPASA"
misc_feature complement(391442..392470)
/locus_tag="Avi_5390"
/note="ABC-type sulfate/molybdate transport systems,
ATPase component [Inorganic ion transport and metabolism];
Region: CysA; COG1118"
/db_xref="CDD:31315"
misc_feature complement(391754..392470)
/locus_tag="Avi_5390"
/note="Part of the ABC transporter complex cysAWTP
involved in sulfate import. Responsible for energy
coupling to the transport system. The complex is composed
of two ATP-binding proteins (cysA), two transmembrane
proteins (cysT and cysW), and a...; Region:
ABC_CysA_sulfate_importer; cd03296"
/db_xref="CDD:73055"
misc_feature complement(392345..392368)
/locus_tag="Avi_5390"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73055"
misc_feature complement(order(391886..391888,391985..391990,
392228..392230,392342..392350,392354..392359))
/locus_tag="Avi_5390"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73055"
misc_feature complement(392228..392239)
/locus_tag="Avi_5390"
/note="Q-loop/lid; other site"
/db_xref="CDD:73055"
misc_feature complement(392033..392062)
/locus_tag="Avi_5390"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73055"
misc_feature complement(391985..392002)
/locus_tag="Avi_5390"
/note="Walker B; other site"
/db_xref="CDD:73055"
misc_feature complement(391967..391978)
/locus_tag="Avi_5390"
/note="D-loop; other site"
/db_xref="CDD:73055"
misc_feature complement(391880..391900)
/locus_tag="Avi_5390"
/note="H-loop/switch region; other site"
/db_xref="CDD:73055"
misc_feature complement(391463..391627)
/locus_tag="Avi_5390"
/note="TOBE-like domain; Region: TOBE_3; pfam12857"
/db_xref="CDD:205111"
gene complement(392485..393354)
/gene="cysW"
/locus_tag="Avi_5391"
/db_xref="GeneID:7381495"
CDS complement(392485..393354)
/gene="cysW"
/locus_tag="Avi_5391"
/codon_start=1
/transl_table=11
/product="sulfate ABC transporter permease CysW"
/protein_id="YP_002547240.1"
/db_xref="GI:222106449"
/db_xref="GeneID:7381495"
/translation="MAMTDRRSPTFHRATTETPVVQCLLILVSLLFLLLFLMLPLVAV
FSEAFRNGASAWLEALVEPDALSAMRLTLLVAAIAVPANVIFGVAAAWAIAKFEFRGK
AFLITLIDLPFSVSPVISGLVYVLLFGSNSLLGPWLRTHGVEILFAVPGIVLATIFVT
FPFVARELIPVMQEQGTGDEEAAISLGASGWQTFWRVTLPNIRWGLLYGVLLCNARAM
GEFGAVSVVSGHIRGVTNTMPLHIEILYNEYNFAAAFAVASLLAGLALVTLVLKTTIE
LRYADQLSAARGH"
misc_feature complement(392602..393150)
/gene="cysW"
/locus_tag="Avi_5391"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(392602..392607,392635..392640,
392677..392682,392689..392700,392719..392721,
392728..392733,392773..392775,392824..392826,
392833..392838,392848..392850,392854..392859,
392866..392868,392872..392874,392881..392886,
392980..392982,392986..392991,392998..393027,
393031..393042,393070..393072,393085..393090,
393097..393102))
/gene="cysW"
/locus_tag="Avi_5391"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(392683..392700,392980..393024))
/gene="cysW"
/locus_tag="Avi_5391"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(392605..392607,392635..392637,
392644..392646,392680..392682,392899..392901,
392980..392982))
/gene="cysW"
/locus_tag="Avi_5391"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(392752..392754,392764..392769,
392785..392823))
/gene="cysW"
/locus_tag="Avi_5391"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(393341..394198)
/gene="cysT"
/locus_tag="Avi_5392"
/db_xref="GeneID:7381496"
CDS complement(393341..394198)
/gene="cysT"
/locus_tag="Avi_5392"
/codon_start=1
/transl_table=11
/product="sulfate ABC transporter permease CysT"
/protein_id="YP_002547241.1"
/db_xref="GI:222106450"
/db_xref="GeneID:7381496"
/translation="MAHSPVQGRWQFRQPSVLPGFGLTFGFTVFYLALIVLIPLSGLV
WRSAELGWADFWHIASDRRTLGALKVSFGSAILAAILNVVFGVLVAWVLVRYNFWGRR
IIDAMVDLPFALPTAVAGIALASLYAPNGWIGSLLAPLGLKVAYTQAGIVVAMVFIGL
PFVVRTVQPVMEEIDRDVEEAAATLGASRFATIFKVLLPGLAPAIMTGFALALARGVG
EYGSVIFVAGNVPYVSEIAPLLIVIRLEEFNYAGATAVGAVMLAISFAMLLLINLIQA
ASRRKYGND"
misc_feature complement(393350..394162)
/gene="cysT"
/locus_tag="Avi_5392"
/note="ABC-type sulfate transport system, permease
component [Posttranslational modification, protein
turnover, chaperones]; Region: CysU; COG0555"
/db_xref="CDD:30901"
misc_feature complement(393404..393997)
/gene="cysT"
/locus_tag="Avi_5392"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(393404..393409,393416..393421,
393428..393433,393437..393442,393449..393454,
393482..393487,393524..393529,393536..393547,
393566..393568,393575..393580,393620..393622,
393671..393673,393680..393685,393695..393697,
393701..393706,393713..393715,393719..393721,
393725..393730,393827..393829,393833..393838,
393845..393874,393878..393889,393917..393919,
393932..393937,393944..393949))
/gene="cysT"
/locus_tag="Avi_5392"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(393530..393547,393827..393871))
/gene="cysT"
/locus_tag="Avi_5392"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(393452..393454,393482..393484,
393491..393493,393527..393529,393743..393745,
393827..393829))
/gene="cysT"
/locus_tag="Avi_5392"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(393599..393601,393611..393616,
393632..393670))
/gene="cysT"
/locus_tag="Avi_5392"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(394226..395242)
/locus_tag="Avi_5393"
/db_xref="GeneID:7381497"
CDS complement(394226..395242)
/locus_tag="Avi_5393"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(sulfate)"
/protein_id="YP_002547242.1"
/db_xref="GI:222106451"
/db_xref="GeneID:7381497"
/translation="MSRFRTVKIIATLAIAASLAMPAVAANVTLLNVSYDPTRELYKD
FNPAFAAYWKQKTGDSVSVRMSHGGSGAQARSVIDGLEADVVTLALEADISAIAEKTG
KIPADWKTKLPSSSSPYTSTIVFLVRKGNPKGIKDWADLTKDGIEVITPNPKTSGGAR
WNVLAAWGWALKANNGDQQKAKEYLSALFKHVPVLDTGARGSTTTFVQRGIGDVLLAW
ENEAFLSIDELGPDKFDIIVPSVSVKAEPPVAVVEGNAKAHGTEAVAKAYLDYLYSDA
GQKIAAKHYYRPAKPELADPADLKRFPSVDLVTIEDFGGWAKVQPQFFADGGLFDQIY
QPGK"
misc_feature complement(394229..395164)
/locus_tag="Avi_5393"
/note="ABC-type sulfate transport system, periplasmic
component [Inorganic ion transport and metabolism];
Region: Sbp; COG1613"
/db_xref="CDD:31801"
misc_feature complement(394382..395128)
/locus_tag="Avi_5393"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_11; pfam13531"
/db_xref="CDD:205709"
gene complement(395436..396473)
/gene="thuR"
/locus_tag="Avi_5394"
/db_xref="GeneID:7381498"
CDS complement(395436..396473)
/gene="thuR"
/locus_tag="Avi_5394"
/codon_start=1
/transl_table=11
/product="transcriptional regulator LacI family"
/protein_id="YP_002547243.1"
/db_xref="GI:222106452"
/db_xref="GeneID:7381498"
/translation="MKGIHQLAKHLDISIGTVSRALNGRPDVNAETRRRVLEAAEELG
YVANQSGRSLRKGSTNVIGLMIESGKDNADNSDNFFFGVMDGLQTVFARHNLDLVLLP
CPADEDPLEYLQRMVARRLVDAMIISATQRVDKRIDLLIKTKIPFVTLGRSTSGGSHT
WIDLDFAGVANSAVDRLVSKGHRRIAIAAPCTDINLGTVFTDAYQAALERNGLAFDPA
LVLRAKSSESGGYSVGSELLALDPRPTAIILIYELMAIGLYRRLAEAGVIPGRDMAVI
GFREAPRARFLQPALTCYRLSLEDLGVELAETLLASMPDYAETYRTHARNRLWPLELV
PGESDAFDLLT"
misc_feature complement(395454..396464)
/gene="thuR"
/locus_tag="Avi_5394"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature complement(396306..396461)
/gene="thuR"
/locus_tag="Avi_5394"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature complement(order(396309..396314,396318..396323,
396330..396332,396339..396341,396378..396380,
396387..396392,396405..396407,396414..396419,
396423..396437,396459..396461))
/gene="thuR"
/locus_tag="Avi_5394"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature complement(396312..396341)
/gene="thuR"
/locus_tag="Avi_5394"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature complement(395472..396293)
/gene="thuR"
/locus_tag="Avi_5394"
/note="Ligand-binding domain of DNA transcription
repressors specific for raffinose (RafR) and
alpha-glucosides (AglR) which are members of the LacI-GalR
family of bacterial transcription regulators; Region:
PBP1_AglR_RafR_like; cd06271"
/db_xref="CDD:107266"
misc_feature complement(order(395637..395639,395721..395723,
395874..395876,395982..395993,396024..396029,
396225..396227,396237..396239))
/gene="thuR"
/locus_tag="Avi_5394"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107266"
gene 396927..397967
/locus_tag="Avi_5395"
/db_xref="GeneID:7381499"
CDS 396927..397967
/locus_tag="Avi_5395"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547244.1"
/db_xref="GI:222106453"
/db_xref="GeneID:7381499"
/translation="MQFKAVLCGCGAMAKGWLRAIADTPSLAERISVVGLVDVNISAA
ESLAQEFGLEGAVTGSSLADVLERTAADLVFDVVIPAARFDIVSTALKAGCHVLSEKP
MANTLQEAKALIKLATETGRIHAVVQNRRFVQGVRRMRQFLDSGAIGELTAVHCDFFL
APHFGGFRDEMEHVLLLDMAIHTFDAARFIANRQPLAAYCVERNPHGSWYAHGASANA
IFEFTDDVVFTYRGSWCAEGRRTSWESAWRLVGSKGMLTWDGEEAFEASIAADEPSLL
RGYTTVNVSDDVAPAETHGHASVLESFIAAVAGGEPPETAGFDNINSLAMVFAAIESA
KSGKRIDISASL"
misc_feature 396927..397958
/locus_tag="Avi_5395"
/note="Predicted dehydrogenases and related proteins
[General function prediction only]; Region: MviM; COG0673"
/db_xref="CDD:31017"
misc_feature 396933..397295
/locus_tag="Avi_5395"
/note="Oxidoreductase family, NAD-binding Rossmann fold;
Region: GFO_IDH_MocA; pfam01408"
/db_xref="CDD:201778"
misc_feature 397344..>397499
/locus_tag="Avi_5395"
/note="Oxidoreductase family, C-terminal alpha/beta
domain; Region: GFO_IDH_MocA_C; cl11611"
/db_xref="CDD:209369"
gene 397974..398912
/locus_tag="Avi_5396"
/db_xref="GeneID:7381500"
CDS 397974..398912
/locus_tag="Avi_5396"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547245.1"
/db_xref="GI:222106454"
/db_xref="GeneID:7381500"
/translation="MTVSNPAKSIRIGTMISGNNGDAATRIREIAGLGFESFEPFFWQ
TTKGQNLAELGKRCVDAIGDRDITISTLGMFGNPLEETDIDLETLEGWKQCIDNAHHF
GASCVAGFTGRLRGKVLTDSLPRYREIWSELAKRAADKGIRIAFENCAMDGNWQSGDW
NIAHNPDAWELMFNETPDDNIGLEWEPCHQMVYLIDPLPQIRKWASKIFHVHGKDATI
RWDVIREHGIFGKEPFVFMRTPGFGDSNWTNVISELRLAGYSGSIDIEGWHDPVYRDA
LEMTGQVHALNHLKQARGGDFIDEMAAYGGGDPSLK"
misc_feature 398052..398666
/locus_tag="Avi_5396"
/note="Xylose isomerase-like TIM barrel; Region:
AP_endonuc_2; pfam01261"
/db_xref="CDD:201692"
gene 399009..400220
/locus_tag="Avi_5398"
/db_xref="GeneID:7381501"
CDS 399009..400220
/locus_tag="Avi_5398"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(sugar)"
/protein_id="YP_002547246.1"
/db_xref="GI:222106455"
/db_xref="GeneID:7381501"
/translation="MIAVLALATACPLASTARADDVTLNLWSLDKDIQPAPNLVKQFN
ALNNGIKIEYRLLQFDDVVTEAMRAYSTGQAPDIIAVDNPEHALFASRGAFLDLTDMI
AKSDVIKPANYFPGPLASVTWKDRYFGVPKATNTIALYYNRDMFKAKGLDPLKPPQTW
DELLAAARKLNDPAKNVYGLAFSAKASEEGTFQFLPWAQMGGGGYDHINAPGAVKALE
TWKTIMTEKLASPDTLTRGQWDSTGTFNSGNAAMAISGPWELDRMLKEAKFDWGVALL
PVPSPGAERSSGMGDFNWAIFSSTKHPAEAFKALEFFASQDKDMFKNFGQLPARSDIA
IPPSGSPLKDAALQVFLEQMKYAKPRGPHPAWPKISKAIQDAIQAALTGQMTPKDALD
QAQKKIKAALG"
misc_feature 399009..400214
/locus_tag="Avi_5398"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
misc_feature 399099..399953
/locus_tag="Avi_5398"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:201851"
gene 400358..401260
/gene="thuF"
/locus_tag="Avi_5399"
/db_xref="GeneID:7381502"
CDS 400358..401260
/gene="thuF"
/locus_tag="Avi_5399"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002547247.1"
/db_xref="GI:222106456"
/db_xref="GeneID:7381502"
/translation="MKRIMSSIVDGRGFDFGLAGVPLAFLLFMSGLPLLYNIVMSFQE
VDMFSLGTFSRPFVGFQNYIDLMAQPETLPIFINTAIFVVASIAGQFLLGFGLALFFG
VGFPGSSWLRGLFLVSWIMPGLVVGATWNWILSGDFGVFNYMLRETGLISANIFWRSD
PAYALWAVIIANIWLGTSFNMILLSVGLSGIPKDLHEAAQLDGATVLQRFYTITLPMM
RSSIGALVSLGLIFTLQQFDLFAAITSGGPANASNVAQYWAWDLSFRQYDFAKGATVS
VIMTVFVLLASLVYVRSTRHEVRG"
misc_feature 400409..401242
/gene="thuF"
/locus_tag="Avi_5399"
/note="ABC-type spermidine/putrescine transport system,
permease component I [Amino acid transport and
metabolism]; Region: PotB; COG1176"
/db_xref="CDD:31369"
misc_feature <400805..401209
/gene="thuF"
/locus_tag="Avi_5399"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(400859..400861,401078..401080,401114..401116,
401129..401131,401159..401161)
/gene="thuF"
/locus_tag="Avi_5399"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(400874..400879,400886..400888,400892..400894,
400901..400906,400910..400912,400922..400927,
400934..400936,400985..400987,401027..401032,
401039..401041,401060..401071,401078..401083,
401120..401122,401129..401131,401159..401164,
401171..401176,401180..401185,401192..401197,
401204..401209)
/gene="thuF"
/locus_tag="Avi_5399"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(400937..400975,400991..400996,401006..401008)
/gene="thuF"
/locus_tag="Avi_5399"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 401257..402084
/locus_tag="Avi_5400"
/db_xref="GeneID:7381503"
CDS 401257..402084
/locus_tag="Avi_5400"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002547248.1"
/db_xref="GI:222106457"
/db_xref="GeneID:7381503"
/translation="MSETVRNRLMLAIALVMAAIYLFPLYWMYVTALKTGSAMFATPP
HFWPDDPQWGVYSDVWQSRNMGRYLWNSTVIALGSVSIICVLGTGCAYVLARYRNGWV
DAGLFLILMLQVLPASLMITPIFVGFSQLGLLNTPRFAVMLAVAAKSMPFFVVLVRSS
FMTVPIELEEAAMVDGNSRIGAFFSIVLPLARNGILVSAILIFMQAFGEFVYSKSMIQ
SVDLQPASVGLNSFMGPNTNEWNGIMAYASIYVTPILAIFVLLQRRIVSGLTSGALK"
misc_feature 401323..402081
/locus_tag="Avi_5400"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 401461..402021
/locus_tag="Avi_5400"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(401509..401514,401521..401526,401539..401541,
401569..401580,401584..401613,401620..401625,
401629..401631,401695..401700,401704..401706,
401710..401712,401719..401724,401728..401730,
401740..401745,401752..401754,401803..401805,
401845..401850,401857..401859,401878..401889,
401896..401901,401938..401943,401971..401976,
401983..401988,401992..401997,402004..402009,
402016..402021)
/locus_tag="Avi_5400"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(401587..401631,401878..401895)
/locus_tag="Avi_5400"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(401629..401631,401689..401691,401896..401898,
401932..401934,401941..401943,401971..401973)
/locus_tag="Avi_5400"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(401755..401793,401809..401814,401824..401826)
/locus_tag="Avi_5400"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 402081..403181
/locus_tag="Avi_5401"
/db_xref="GeneID:7381504"
CDS 402081..403181
/locus_tag="Avi_5401"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002547249.1"
/db_xref="GI:222106458"
/db_xref="GeneID:7381504"
/translation="MTIQIELNGVNKHYGAFHALKNINLAIEKGSFVALVGPSGCGKS
TLLRSLAGLEKISAGEMKIAGNLMTNVPPRKRDIAMVFQSYALYPHMTVEENLTYSLR
IKGIGKAEARQAAEAVATTTGLMPLLKRYPRELSGGQRQRVAMSRAIIRNPKAFLFDE
PLSNLDASLRVHMRKEIRLLHDRLKATSVYVTHDQVEAMTMADHVVVMRDGVIEQQGR
PLDLYDRPANRFVAGFIGSPAMNFIPARVSPDGLGLELDFVGKAEILRFAAGMTDGLA
AGQPLTLGLRPEHLSLTAPGEGAFDVEVALVESTGSSTYVTTRTEPELTIVVSGGRGL
RSGDRLGVRIDPQTVHLYDAQTGLRLDFEGMQ"
misc_feature 402090..403163
/locus_tag="Avi_5401"
/note="glycerol-3-phosphate transporter ATP-binding
subunit; Provisional; Region: ugpC; PRK11650"
/db_xref="CDD:183258"
misc_feature 402093..402731
/locus_tag="Avi_5401"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 402189..402212
/locus_tag="Avi_5401"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(402198..402203,402207..402215,402327..402329,
402555..402560,402657..402659)
/locus_tag="Avi_5401"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 402318..402329
/locus_tag="Avi_5401"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 402483..402512
/locus_tag="Avi_5401"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 402543..402560
/locus_tag="Avi_5401"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 402567..402578
/locus_tag="Avi_5401"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 402645..402665
/locus_tag="Avi_5401"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature 402927..>403043
/locus_tag="Avi_5401"
/note="TOBE domain; Region: TOBE_2; cl01440"
/db_xref="CDD:207413"
gene 403631..404620
/locus_tag="Avi_5403"
/db_xref="GeneID:7381505"
CDS 403631..404620
/locus_tag="Avi_5403"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547250.1"
/db_xref="GI:222106459"
/db_xref="GeneID:7381505"
/translation="MFRRKLASTLFTLGLFSGTALAADKVTFQLDWLPGGDKAPIYVC
IHQGFCRDAGLDVTIASGRGSTEAISKLAAGSSDIGVSDIGALMAARANEGVKVIGVL
SVFNKGPHAFYVIKGGSIASVADVKGKTIATSPFTSSNVYLPLVLKDQSIDPAAIKLI
KADPGALGPMLMTGNADGIIAWMTDFTRYSNQARQAGKEIVALPWSAAGLELYSASLI
ASEDFLAKRPDVAKRFIDAYKKSVQFTRANPDAAVTSVTSVVPELGSEDVKGSINDTL
PLIFNEVTDKDGLGVFEPKRLTETWRRVAAAQAIDPAKLDPETVVNRSFIPTE"
misc_feature 403736..404386
/locus_tag="Avi_5403"
/note="NMT1/THI5 like; Region: NMT1; pfam09084"
/db_xref="CDD:192206"
misc_feature 403835..>404383
/locus_tag="Avi_5403"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene 404626..405399
/locus_tag="Avi_5404"
/db_xref="GeneID:7381506"
CDS 404626..405399
/locus_tag="Avi_5404"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002547251.1"
/db_xref="GI:222106460"
/db_xref="GeneID:7381506"
/translation="MTIPAIRFERLGQVFSTRSGQTEALRDVSFEVARHEFLAILGPS
GCGKSTLLRMIAGLLAPSSGSLQVFGHPVTEPRDDIGIVFQKPTLLPWATVEDNVLFP
ARHKRGRVSAEERQRAGELLRMVGLEGFASRLPDELSGGMQQRVGIARALLMDPDILL
MDEPFSALDALTREVMGFDLLRIFTERPKTVVFITHSVNEAALLADRVLVMTGRPGTV
LTDIVVPVGRPRGPETANERAIHDLTAYLRDLLLKRQAA"
misc_feature 404635..405396
/locus_tag="Avi_5404"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:31313"
misc_feature 404641..405300
/locus_tag="Avi_5404"
/note="NrtD and SsuB are the ATP-binding subunits of the
bacterial ABC-type nitrate and sulfonate transport
systems, respectively. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:73052"
misc_feature 404749..404772
/locus_tag="Avi_5404"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73052"
misc_feature order(404758..404763,404767..404775,404878..404880,
405109..405114,405211..405213)
/locus_tag="Avi_5404"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73052"
misc_feature 404869..404880
/locus_tag="Avi_5404"
/note="Q-loop/lid; other site"
/db_xref="CDD:73052"
misc_feature 405037..405066
/locus_tag="Avi_5404"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73052"
misc_feature 405097..405114
/locus_tag="Avi_5404"
/note="Walker B; other site"
/db_xref="CDD:73052"
misc_feature 405121..405132
/locus_tag="Avi_5404"
/note="D-loop; other site"
/db_xref="CDD:73052"
misc_feature 405199..405219
/locus_tag="Avi_5404"
/note="H-loop/switch region; other site"
/db_xref="CDD:73052"
gene 405455..406210
/locus_tag="Avi_5406"
/db_xref="GeneID:7381507"
CDS 405455..406210
/locus_tag="Avi_5406"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002547252.1"
/db_xref="GI:222106461"
/db_xref="GeneID:7381507"
/translation="MGLPGLAALVSLAGVIVFWELAVRLFAVPSYLLPSPSSIFNAFS
SIGIDRWGLHLWATLRVAMIGYVLSIAIAIPLAIVMMRSPLLSKTLYPLLVVIQSTPV
VAVAPIIIVVLGAGDAPRVVITCLITFFPLVVSTATGLAATPPELIELSRSLRAPAFR
EITQIRLPFAVPYIFSALKISITLAVIGAVVAEFCASEAGVGYFIQFSTSLFKLPQAW
AGLFVLAALSLILFQAVLLVQKLLFPWSLPKNS"
misc_feature 405467..406204
/locus_tag="Avi_5406"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature 405548..406189
/locus_tag="Avi_5406"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cl00427"
/db_xref="CDD:211439"
misc_feature order(405665..405670,405677..405682,405722..405733,
405737..405766,405773..405778,405782..405784,
405833..405838,405842..405844,405848..405850,
405857..405862,405863..405865,405875..405880,
405887..405889,405938..405940,405980..405985,
405992..405994,406013..406024,406031..406036,
406073..406078,406106..406111,406118..406123,
406127..406132,406139..406144)
/locus_tag="Avi_5406"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(405740..405784,406013..406030)
/locus_tag="Avi_5406"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(405782..405784,405818..405820,406031..406033,
406067..406069,406076..406078,406106..406108)
/locus_tag="Avi_5406"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(405890..405928,405944..405949,405959..405961)
/locus_tag="Avi_5406"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 406328..407311
/locus_tag="Avi_5408"
/db_xref="GeneID:7381508"
CDS 406328..407311
/locus_tag="Avi_5408"
/codon_start=1
/transl_table=11
/product="flavonol synthase/dioxygenase"
/protein_id="YP_002547253.1"
/db_xref="GI:222106462"
/db_xref="GeneID:7381508"
/translation="MQSYSLAELNKETTIGGIGKTVERDVPVIDLADFDNRKAEIADQ
LWEASVGIGFFQVYNHGIPQQDIDAAFETAWSFFELPADIKAQYPMPKGTNAGWEFKA
QVRPSTGTPDNKESYQITRPMMGGLWPSEEELPDFKEKMLRFERQNWELGMRILSCFA
LKMGFAEDFFTKAHDPASSEYQSTQRLIHYMSMEHAKPEDFEFWRAGAHSDFDCLTIL
HQKEGEGGLQVCPGKDAASGEWTDVPPKNGYITCNIGDMLMRWSDDQLQSTLHRVRMP
RPGEYLGRRLSLPFFCQANRDAVMQGPLGKYEAITAGDYLTQRINANFARK"
misc_feature 406397..407308
/locus_tag="Avi_5408"
/note="Isopenicillin N synthase and related dioxygenases
[General function prediction only]; Region: PcbC; COG3491"
/db_xref="CDD:33294"
misc_feature 406403..406717
/locus_tag="Avi_5408"
/note="non-haem dioxygenase in morphine synthesis
N-terminal; Region: DIOX_N; pfam14226"
/db_xref="CDD:206394"
misc_feature 406946..407206
/locus_tag="Avi_5408"
/note="2OG-Fe(II) oxygenase superfamily; Region:
2OG-FeII_Oxy; pfam03171"
/db_xref="CDD:190552"
gene 407398..408300
/locus_tag="Avi_5409"
/db_xref="GeneID:7381509"
CDS 407398..408300
/locus_tag="Avi_5409"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002547254.1"
/db_xref="GI:222106463"
/db_xref="GeneID:7381509"
/translation="MLHGRALRYIDEVARQGSIRKAAKTLNVAASAINRYILDLEQEL
DAPIFERLSRGLKLTSSGEILIAHIRETLKAHDTMRVQIKALRGLSRGEVVIATMATL
AAGRLADIIAAYRADIPQVSLRIKVGDRAAVCDMVASGAADLALAYNLPEDNRLQRAA
EFMHPLGAVVAPDHPLATRKTVRIADCLIYPLVLADKSLSLREVVENLTPAQAQLTPV
VETNSMELMKRLVHGAPHVTFLNRVDVDRELQSGELVFLPLTGSAGLQRLNILHRARG
SLSPAASHFMHYAQERLRMVEDSR"
misc_feature 407410..408279
/locus_tag="Avi_5409"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 407410..407586
/locus_tag="Avi_5409"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 407674..408261
/locus_tag="Avi_5409"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature order(407719..407724,407728..407733,407740..407742,
407752..407754,407758..407778,408049..408066,
408082..408087,408091..408096)
/locus_tag="Avi_5409"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 408372..409754
/locus_tag="Avi_5410"
/db_xref="GeneID:7381510"
CDS 408372..409754
/locus_tag="Avi_5410"
/codon_start=1
/transl_table=11
/product="cytosine deaminase-like protein"
/protein_id="YP_002547255.1"
/db_xref="GI:222106464"
/db_xref="GeneID:7381510"
/translation="MIDSSVRTLARTSFTGHGRIVIRQARVPTVCLADGVPPDSALDR
DGCALVDILLDDGRVAAVLPAASGVTGGGIDLEGRHLWPLMIDMHVHLDKGHTISRAP
ASDGTHPSARAATTADRQAHWRHDDLVRRMEFGLACADAHGVAALRTHLDSHAGQAET
TWAAFDEVQARWSGRIALQAVGLVPLDAYRTDHGKQLADLIARQGGLLGGVTRASGGT
HGIGKNGTGLDDIDALLDSLFLLARERDLDIDLHVDEAEKADALPHVARAAIRHGYEG
RVTCGHCCSLALFSETEIRERIALLADAGLSIVTLPTVNMYLQGRAQGITPRWRGVTP
VKELRAAGIRVAVAGDNCRDPFFAYGDHDMVDTWRQSVRILHLDHPYDDAVALATTQP
AAMTGFSTGTIGAGRPADLMIFEAWSMDQVIARPQTDRVIVRAGRVSEAVLPSYREIE
LPFLTPSPSS"
misc_feature 408393..409739
/locus_tag="Avi_5410"
/note="cytosine deaminase-like protein; Validated; Region:
PRK07583"
/db_xref="CDD:181050"
misc_feature 408495..409685
/locus_tag="Avi_5410"
/note="Bacterial cytosine deaminase and related
metal-dependent hydrolases. Cytosine deaminases (CDs)
catalyze the deamination of cytosine, producing uracil and
ammonia. They play an important role in pyrimidine
salvage. CDs are present in prokaryotes and fungi; Region:
Bact_CD; cd01293"
/db_xref="CDD:30036"
misc_feature order(408636..408638,408642..408644,409125..409127,
409134..409136,409215..409217,409419..409421)
/locus_tag="Avi_5410"
/note="active site"
/db_xref="CDD:30036"
gene complement(409732..412758)
/locus_tag="Avi_5411"
/db_xref="GeneID:7381511"
CDS complement(409732..412758)
/locus_tag="Avi_5411"
/codon_start=1
/transl_table=11
/product="beta-galactosidase"
/protein_id="YP_002547256.1"
/db_xref="GI:222106465"
/db_xref="GeneID:7381511"
/translation="MTIQTLPAKAHLDWLSDPKVFAVGRLPAHSDHIVYPDEASAKAG
SASPLRQSLDGTWKFLSAISAAERPEGFHHHDFDRSGFGDITVPGAMQLQGHGRPQYV
NTQYPWDGHEALALGQAAEANRVGCYARTFQLDPALAGQRIILTFDGVETAFYVWLNG
RFIGYAEDSFTPSRFDITDALIDGDNLLAVEVYHRSSGAWLEDQDFWRLSGIMRPVRL
EAWRSLHIRDLFVTTDLADDFNSGSLRLRLALDLAEESPGSLAVTLYDPKGETVLTTS
FDAAAEMDIALPVTAPLLWSAEAPHLYRLLLVVKDSKGATIEAVPQPVGFRRFEMRDG
VMRLNGQRIVFRGINRHDFHPRRGRALTVEDMLWDVLFFKRNNINAVRTSHYPNRSEF
YALCDQHGLYVIDEANLETHGTWSVETLDPDKVLPGDRDEWRPAVLDRAANMLERDKN
HPCVLIWSCGNESYGGSVIADMADWFRDRDPSRLVHYEGVFHDRRFDARSSDMESRMY
ARPQDIEDFLRSNPSKPFVSCEYTHAMGNSCGGMHLYTDLTYRYDQCQGGFIWEYIEQ
ALYGTRPDGSEGLLFGGDFGDRPTDYSFCCDGIITADRQLTPKVQEIKALYQPVRLIP
DAHGVKVINDNLFLNLDAFYLSYHLLKDGVAVDEGRADIALSAQEQTYLRLSIPVTQQ
PGEYALQCSLRERHDRAWAPADHEVAFGEHVWTVAGEKPNPVSLPLTRAEGSYNLGIS
DGHSRTLFCRRFGGPVSLVNAAGVEFLERPPLPIFWRAPTDNDRGAGFGFKFGSWRRA
SLDQKQASYAYRDGGADYRFALPDSSMQATVSYRYEEDGAIAVTAHWPGDASLPSLPL
FGLTIPMPATFNRFRYYGLGPEENHIDRAHGARLGIYQRAVADNVTPYVIPQESGNRT
GVRWAELFDAEGNTLRFEAVDMPFELGVSPYTAFQLEAAARPYDLPPANRTIVTLMAR
QMGVGGDDSWGALPHPQYMIEPGEPLTLTFRMRVMG"
misc_feature complement(409810..412707)
/locus_tag="Avi_5411"
/note="cryptic beta-D-galactosidase subunit alpha;
Reviewed; Region: ebgA; PRK10340"
/db_xref="CDD:182390"
misc_feature complement(412099..412620)
/locus_tag="Avi_5411"
/note="Glycosyl hydrolases family 2, sugar binding domain;
Region: Glyco_hydro_2_N; pfam02837"
/db_xref="CDD:202424"
misc_feature complement(411778..412086)
/locus_tag="Avi_5411"
/note="Glycosyl hydrolases family 2; Region:
Glyco_hydro_2; pfam00703"
/db_xref="CDD:201405"
misc_feature complement(410899..411774)
/locus_tag="Avi_5411"
/note="Glycosyl hydrolases family 2, TIM barrel domain;
Region: Glyco_hydro_2_C; pfam02836"
/db_xref="CDD:202423"
misc_feature complement(409747..410520)
/locus_tag="Avi_5411"
/note="Beta galactosidase small chain; Region:
Bgal_small_N; smart01038"
/db_xref="CDD:198106"
gene 413162..414352
/locus_tag="Avi_5412"
/db_xref="GeneID:7381512"
CDS 413162..414352
/locus_tag="Avi_5412"
/codon_start=1
/transl_table=11
/product="transcriptional regulator ROK family"
/protein_id="YP_002547257.1"
/db_xref="GI:222106466"
/db_xref="GeneID:7381512"
/translation="MNLWTSTPPMLRQISVRAAMDILLHQGPTSRADLAKKTGLSKQT
MSEVIRTLETAGWVRVKGIVSGKVGRSAVTYEVAPDAGFVIGMDIGATTIRVAIADIA
GTIVHEVEKSAGEHGGEALLAHVSGVVEASLKKARVSRSKVLLAAVAMPGVIDPETGR
LSLAPNLSEIGSLDVIKALQGIFRCDVIIENDVNAAVIGESWKGSGIGLDSVAFVSLG
TGIGLGVLFNGKLMRGAKGAAGEIGYLPFGADPYNSESLERGALECAIGARGILERYG
NPGDGGMTVRDILEAAEKGDAKALATVQETARLAALLVVSVHAMLDPGKIILGGNVGR
NPLMVRMVKEALATSTRSSISLEASTLASRATLVGAVAIALNQLHNALFSPQDLPSEM
RLPA"
misc_feature 413204..>413344
/locus_tag="Avi_5412"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature order(413204..413212,413249..413257,413282..413293,
413297..413302,413309..413314,413318..413323,
413339..413344)
/locus_tag="Avi_5412"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature order(413249..413251,413258..413260)
/locus_tag="Avi_5412"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
misc_feature 413390..414295
/locus_tag="Avi_5412"
/note="Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism];
Region: NagC; COG1940"
/db_xref="CDD:32123"
misc_feature 413414..413890
/locus_tag="Avi_5412"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature order(413423..413434,413438..413440,413444..413446,
413735..413737,413807..413818)
/locus_tag="Avi_5412"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
misc_feature <413960..414199
/locus_tag="Avi_5412"
/note="Uncharacterized protein conserved in archaea
[Function unknown]; Region: COG4020; cl07907"
/db_xref="CDD:186710"
gene complement(414368..415171)
/locus_tag="Avi_5413"
/db_xref="GeneID:7381513"
CDS complement(414368..415171)
/locus_tag="Avi_5413"
/codon_start=1
/transl_table=11
/product="transporter formate/nitrite transporter family"
/protein_id="YP_002547258.1"
/db_xref="GI:222106467"
/db_xref="GeneID:7381513"
/translation="MSEEDKQDIGERGSGSAKVVHEVVRLQGDEELGRPLQSLLFSGF
AAGVAICASLLAEAFLHVRLPDTPWRELVVYLGYTVGFVIVILGNLQLFTETTVTAVL
PIAAHPTRRNFYRLLRLWVTVLAANLLGTFFIAVLMENQLIIGAEQREAVLDISRAIL
GHDFATTLLLAAPAGFLIASIAWILPNAKGNEFWVIVMITYTVALGGFSHVVAGSGEA
WLLMLAGETNVWGAVGGFILPTLIGNIIGGTGLFAVVAHCQVRDELKPD"
misc_feature complement(414464..415123)
/locus_tag="Avi_5413"
/note="Formate/nitrite transporter; Region:
Form_Nir_trans; pfam01226"
/db_xref="CDD:201671"
gene complement(415368..416759)
/locus_tag="Avi_5414"
/db_xref="GeneID:7381514"
CDS complement(415368..416759)
/locus_tag="Avi_5414"
/codon_start=1
/transl_table=11
/product="chlorohydrolase family protein"
/protein_id="YP_002547259.1"
/db_xref="GI:222106468"
/db_xref="GeneID:7381514"
/translation="MHDQYRVPAMSDFRNRVLIASGFHAPVAGEIDMLTDCLIAIDAE
GMILSVQRPGDDGYALTKAEADRQGRLSRLPAGCLLLPGLVDCHVHAPQYPQLGTALD
VPLETWLHAHTFPLEARYADLAYAKRVYGLLVDDLLANGTTTALYFATIHQDATRILV
DTCLEKGQRALIGKVAMDNAEQCPDYYRDASPDAALQGTQALIDYISTHPDNTASRVW
PVVTPRFIPACTDATLEGLGAMAQDCGCHVQTHCSESDWEHAYVLSRHGMTDAMSLDR
FGLLTRRSMLAHANLLTADDMDLIKLRQTAVAHCPLSNGYFAGAVFPLRAALEKGLHV
GLGSDISGGPSASLLDNMRAAILVSRMLETGVDPGLPPEKRASGTKARIDFRHAFHVA
TAGGGKALDLPIGQFAPGYRFDAIVVDPQAAQGTLRFCESDEMTETLLQKIVFTASRA
NISAVFIDGCKVA"
misc_feature complement(415383..416693)
/locus_tag="Avi_5414"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature complement(415383..416588)
/locus_tag="Avi_5414"
/note="guanine deaminase; Region: guan_deamin; TIGR02967"
/db_xref="CDD:132012"
misc_feature complement(order(415743..415745,415896..415898,
416007..416009,416490..416492,416496..416498))
/locus_tag="Avi_5414"
/note="active site"
/db_xref="CDD:30035"
gene complement(416752..417603)
/locus_tag="Avi_5416"
/db_xref="GeneID:7381515"
CDS complement(416752..417603)
/locus_tag="Avi_5416"
/codon_start=1
/transl_table=11
/product="vanillate O-demethylase oxygenase subunit"
/protein_id="YP_002547260.1"
/db_xref="GI:222106469"
/db_xref="GeneID:7381515"
/translation="MMAIDKTSLDQWYPIDTEALIPYGTSANRLLGIDLAVIRTQDGD
VTVKAQENNLPIRRRYGYIWTTLGTPDKEIFPIEEADEPDRRMVPCGAVTVKASGLRI
VENFLDMAHFPFVHTDILGSEPHTEVEHYNVEIRRDVDEVWATNCQFFQPQAALSATD
GLMTHYIYRVMTPFTTLLYKTCPNSDSRWDVICLFVQPLDPDRCRAHPIMYLIDDQST
TASLIQFQQLIFLQDRIILENQRPVLLPMEPRSEIPTRADATSIAYRRWLKEKGVTYG
TSLKAVA"
misc_feature complement(416776..>417444)
/locus_tag="Avi_5416"
/note="Phenylpropionate dioxygenase and related
ring-hydroxylating dioxygenases, large terminal subunit
[Inorganic ion transport and metabolism / General function
prediction only]; Region: HcaE; COG4638"
/db_xref="CDD:34257"
misc_feature complement(<417070..417306)
/locus_tag="Avi_5416"
/note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
ligand-binding domain superfamily; Region: SRPBCC;
cl14643"
/db_xref="CDD:209878"
gene complement(417627..418562)
/locus_tag="Avi_5417"
/db_xref="GeneID:7381516"
CDS complement(417627..418562)
/locus_tag="Avi_5417"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002547261.1"
/db_xref="GI:222106470"
/db_xref="GeneID:7381516"
/translation="MELLTGLLTTAFLAGGVLALAAMGEVLAERVGVVNLGVEGLIAM
GAITAVATVTAFPSPILGFLAALAVGALFGVVFAVATVTIRANQVLCGLALTLIGTGL
AQTIGKSYSGMPVPATFQGVKMPILSEIPILGPAFFSQNILVYLIYIILPLGLSFLMF
RTRHGLNMRAVGENPAAADAAGIPVHRIRFGYVCAGAALASGAGAYLVLAFVPSWSDG
VVAGRGWIAVALVIFAGYRPIPAALSGLLFGFITALGFVGQARGWPIAPAFLSMLPYA
GTIAFIIVPVIAWQRMRRLMAAPAALGLPYYRSLR"
misc_feature complement(417735..>418094)
/locus_tag="Avi_5417"
/note="Transmembrane subunit (TM) of Treponema pallidum
(Tp) RbsC-1, RbsC-2 and related proteins. This is a
functionally uncharacterized subgroup of TMs which belong
to a larger group of TMs of Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette; Region:
TM_PBP1_transp_TpRbsC_like; cd06580"
/db_xref="CDD:119322"
misc_feature complement(417981..418037)
/locus_tag="Avi_5417"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119322"
gene complement(418574..419620)
/locus_tag="Avi_5418"
/db_xref="GeneID:7381517"
CDS complement(418574..419620)
/locus_tag="Avi_5418"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002547262.1"
/db_xref="GI:222106471"
/db_xref="GeneID:7381517"
/translation="MASLRLQRFPSTTPAAALGARVAAIALALLIAGVILAVAGKSPV
NLGIQVVSSSLGSSFGLEDLGLLVIPLILTGLSVTVAQQIGAWNIGAEGQFYAGAFAA
SAVGLFVPLPEGWSLVAMFFAGAVGGSIWILIPALARAYANVNELITTLLLNFVAILM
VYYVSTDAWRERGGVANSATPRIKAEMPEFWGLVHWGLPIAVLLALAMAALLAFTRWG
YEVRLIGSNPHAGNYAGIAARRHLITVMLLSGAIAGLAGMLEVTGTVHRLQGGISNNY
GYLGIMVAVLARGSCIGVILAGALMAFILNSGIILQTQGLTTSTVLAITGLILFLTAI
GDEISHYRIVRDKT"
misc_feature complement(418622..419416)
/locus_tag="Avi_5418"
/note="Transmembrane subunit (TM) of Treponema pallidum
(Tp) RbsC-1, RbsC-2 and related proteins. This is a
functionally uncharacterized subgroup of TMs which belong
to a larger group of TMs of Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette; Region:
TM_PBP1_transp_TpRbsC_like; cd06580"
/db_xref="CDD:119322"
misc_feature complement(418880..418936)
/locus_tag="Avi_5418"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119322"
gene complement(419613..421208)
/locus_tag="Avi_5419"
/db_xref="GeneID:7381518"
CDS complement(419613..421208)
/locus_tag="Avi_5419"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(sugar/ribonucleotide)"
/protein_id="YP_002547263.1"
/db_xref="GI:222106472"
/db_xref="GeneID:7381518"
/translation="MNEHPAKFAVPTGAAPLVQLKGIAKYFPGVIANRDVDLEVMPGE
IHALLGENGAGKSTLMNILTGIYQPDAGEIIIDGYARQFTGPQQAIAAGIGMIHQHFK
LVNAFTVAENIHLGWSETPRRASAPVLEERTAELAARFNLQVKPSARITGLSTGEQQR
VEILRVLARKARVLILDEPTAVLTPLEARELFKALRDFVSTGNAVIFISHKLDEVLEI
SDRVTILRGGQKVGTELSADCSPAKLARLMVGRDIVLADMRGRPQGAAALSSAPVMRV
STVTALDDSGRQALHDISLDLRAGEILGIAGVAGNGQRELSQVVTGTRPIASGTIEID
GEAVGDANAADFVRRGIGHIPEDRLQSGLAPGLSITINAVMREYGKPPVTVGGLFRPS
AAKALARSIASVAEVAIPDFAMPIRNLSGGNQQRLVARREMRIATKILVAAYPSRGLD
VGAINTMLRYIVDLRNAGAGILLISEELEELLNLSDRIAVLYEGRIMGIVENDSTDIE
QIGLMMGGRQLQPGQLAGGTQHG"
misc_feature complement(419661..421169)
/locus_tag="Avi_5419"
/note="ABC-type uncharacterized transport systems, ATPase
components [General function prediction only]; Region:
COG3845"
/db_xref="CDD:33636"
misc_feature complement(420510..421157)
/locus_tag="Avi_5419"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature complement(421038..421061)
/locus_tag="Avi_5419"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature complement(order(420579..420581,420675..420680,
420912..420914,421035..421043,421047..421052))
/locus_tag="Avi_5419"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72975"
misc_feature complement(420912..420923)
/locus_tag="Avi_5419"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature complement(420723..420752)
/locus_tag="Avi_5419"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature complement(420675..420692)
/locus_tag="Avi_5419"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature complement(420657..420668)
/locus_tag="Avi_5419"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature complement(420573..420593)
/locus_tag="Avi_5419"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
misc_feature complement(419721..420356)
/locus_tag="Avi_5419"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene complement(421282..422394)
/locus_tag="Avi_5420"
/db_xref="GeneID:7381519"
CDS complement(421282..422394)
/locus_tag="Avi_5420"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_002547264.1"
/db_xref="GI:222106473"
/db_xref="GeneID:7381519"
/translation="MIDLRSLSRRGFLNMAAAGSASLALPGMVRSASAANTLAAIKEE
DAVIGFGHVGPVTDEGWTWSHHQGVLAVKEKFPKLKKILEVENVPYSADATRTYRQFV
SEGANMIFDTSSTGDFLHDVVRRAKDTAFMECNGHVTMDNLGWYYMAHWYPTYVVGVA
AGHLSKTGKLGYVASFPVASVYASTNAFLMGARTVNPNATCQTITINSWFDPQAAAQA
GTALIDNGCDFLFGIMDEAAYLQVAEKRGVWAAMWNTDIRRYGPNSYVSSIIIDFKEF
YIDQVRKRLAGEWSPSESIFAMGAGVDRDSWGAKVPAEVGKAADDIRTKILGGWSPFV
GELKDAKGAVRVAKGQKMTELELYNWDWSVEGVTGL"
misc_feature complement(421366..422304)
/locus_tag="Avi_5420"
/note="Uncharacterized ABC-type transport system,
periplasmic component/surface lipoprotein [General
function prediction only]; Region: Med; COG1744"
/db_xref="CDD:31930"
misc_feature complement(421489..422256)
/locus_tag="Avi_5420"
/note="Periplasmic binding domain of the basic membrane
lipoprotein Med in Bacillus and its close homologs from
other bacteria and Archaea; Region: PBP1_BmpA_Med_like;
cd06353"
/db_xref="CDD:107348"
misc_feature complement(order(421582..421584,421633..421635,
421768..421770,421852..421854,421990..421992,
422209..422211,422233..422238))
/locus_tag="Avi_5420"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107348"
gene 423154..423846
/locus_tag="Avi_5422"
/db_xref="GeneID:7381520"
CDS 423154..423846
/locus_tag="Avi_5422"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002547265.1"
/db_xref="GI:222106474"
/db_xref="GeneID:7381520"
/translation="MSIETAWVPVALSSSIEPGTSAGAVVDGAEIVVWRDAKGAAHVW
EDRCPHRGMRMSFGFVRGDHIACLYHGWSYDTAGQCTHIPAHPDLDVPKTIRVTTYAA
EERDGVIWAALADHADVASIPDLGVGLNVRSLYADCTIQQAMNVLKEAQLPTKEGILP
AHFEVLTANAWRLEAGDLRVAIAVQVISAGRLALHLVTDAGSTALRPALARWAEALRL
TLEAPSPLAQVA"
misc_feature 423169..>423504
/locus_tag="Avi_5422"
/note="Phenylpropionate dioxygenase and related
ring-hydroxylating dioxygenases, large terminal subunit
[Inorganic ion transport and metabolism / General function
prediction only]; Region: HcaE; COG4638"
/db_xref="CDD:34257"
misc_feature 423172..423507
/locus_tag="Avi_5422"
/note="Rieske non-heme iron oxygenase (RO) family,
N-terminal Rieske domain of the oxygenase alpha subunit;
The RO family comprise a large class of aromatic
ring-hydroxylating dioxygenases found predominantly in
microorganisms. These enzymes enable...; Region:
Rieske_RO_Alpha_N; cd03469"
/db_xref="CDD:58539"
misc_feature order(423295..423297,423301..423306,423352..423354,
423361..423363,423367..423369)
/locus_tag="Avi_5422"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:58539"
gene 423846..424478
/locus_tag="Avi_5423"
/db_xref="GeneID:7381521"
CDS 423846..424478
/locus_tag="Avi_5423"
/codon_start=1
/transl_table=11
/product="Gst12 glutathione-S-transferase"
/protein_id="YP_002547266.1"
/db_xref="GI:222106475"
/db_xref="GeneID:7381521"
/translation="MSAITLYNYDLDENCYRVRLLLSCLDVAYETLAIDMVPGREEQT
PTMLALNPLGELPVLKDGEQVLYGTQAILAHLARVYDPSGTWLPLDPAVFSGVMQWTL
FSAAPLGCAVTARRVALFGGPGDVEVLKASSRAAFRIMDDHMTLRQMDGCEWFAGAGP
TIADLALFPSFALSRDYGIDHDEFPALRRWIRRFRTVAGFRTMPGIPDYH"
misc_feature 423855..424457
/locus_tag="Avi_5423"
/note="Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones]; Region: Gst;
COG0625"
/db_xref="CDD:30970"
misc_feature 423855..424076
/locus_tag="Avi_5423"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:213097"
misc_feature 424134..424445
/locus_tag="Avi_5423"
/note="C-terminal, alpha helical domain of the Glutathione
S-transferase family; Region: GST_C_family; cl02776"
/db_xref="CDD:207726"
misc_feature order(424137..424139,424158..424160,424329..424331,
424338..424343,424350..424352,424362..424364)
/locus_tag="Avi_5423"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198286"
misc_feature order(424137..424142,424149..424154,424161..424163,
424260..424262)
/locus_tag="Avi_5423"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198286"
misc_feature order(424158..424160,424170..424175,424353..424355,
424362..424364)
/locus_tag="Avi_5423"
/note="substrate binding pocket (H-site) [chemical
binding]; other site"
/db_xref="CDD:198286"
gene 424533..426332
/gene="ade"
/locus_tag="Avi_5424"
/db_xref="GeneID:7381522"
CDS 424533..426332
/gene="ade"
/locus_tag="Avi_5424"
/codon_start=1
/transl_table=11
/product="adenine deaminase"
/protein_id="YP_002547267.1"
/db_xref="GI:222106476"
/db_xref="GeneID:7381522"
/translation="MALTRFSVAPLAGMTRHLANVASGRAAPDLVITGARVLSTYSER
ILPDREIWLAGGRIAAVKPAGSSKASGVPRYDAQGGILAPGLVDPHIHIESSMVTACA
YAEAALLNGTTTIFCDSHEIGNVMDVAGVEAMLEDARHAPLSIFLTVPSTVPATSPEL
ETAGGDLTADKIAALFDRWPEAVALGEKMDFVPVTMGDERAHAILAAALSRGRPVSGH
VYGREFVSAYAASGVTDTHEAIDRDIADDLLEAGIWLFLRGGPPTTPWHSLPEAIRTV
TELGASHKRIAVCTDDRDAEDLLAFGLDWVVREARRAGMSREQAWAMGSLHGATRFGM
DGEIGGLGGGRRADLVLLNDDLEPVSTWYGGELVVDHKKITPLLDAALSNRWRYPDAA
YHTVKLPDVVKLTPDLPSSKVIANTIRTELPGIILGHEKIELEPANDWETHFARHGLC
FVTVIERHGKSPGNVAHALLSNFALKSGAVASSVGHDSHNIIIAGTNEADMQVALRAI
ESHQGGVCVVQDGKVTAMVPLPVAGLMSDKRVHEVAAEVQALKVEWEKAGCIIPYMGF
NLIPLSVIPEIRITDKGLVTVPQMVIVPPFEAA"
misc_feature 424578..426320
/gene="ade"
/locus_tag="Avi_5424"
/note="Adenine deaminase [Nucleotide transport and
metabolism]; Region: AdeC; COG1001"
/db_xref="CDD:31205"
misc_feature 424617..>424811
/gene="ade"
/locus_tag="Avi_5424"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature 424758..>425651
/gene="ade"
/locus_tag="Avi_5424"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature order(424800..424802,424806..424808,425184..425186,
425241..425243,425403..425405)
/gene="ade"
/locus_tag="Avi_5424"
/note="active site"
/db_xref="CDD:30035"
misc_feature 425805..426293
/gene="ade"
/locus_tag="Avi_5424"
/note="Adenine deaminase C-terminal domain; Region:
Adenine_deam_C; pfam13382"
/db_xref="CDD:205560"
gene 426332..427282
/locus_tag="Avi_5425"
/db_xref="GeneID:7381523"
CDS 426332..427282
/locus_tag="Avi_5425"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator"
/protein_id="YP_002547268.1"
/db_xref="GI:222106477"
/db_xref="GeneID:7381523"
/translation="MDAYRLGLVATRIHYFQLVARLGSIRQAALALNVAPSSVSRILR
RLEEEIGTPLFDRVRQRLKLTSAGELLLYHAKASLSELSRACAEINDLHGLHRGTVSV
AVVESVARGLLPAALEAFWSRHPAITVDVKVMASQQAANAVAEGECDLAVLFDVRVPR
TVRRIASVSLPIGVLALPDSDMAKRTEIKLFDLANLRVILSDASLTLGASVEEALNRS
LVDLSHRSRTNSIGLMVELARRNLGLVLQTRVGVEQELAEGSLVFVPLSDSRLPNRKL
LLLSRSAKEMSDAASALGRLLEQSVEQLTQAAAHAPRDLS"
misc_feature 426368..426538
/locus_tag="Avi_5425"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 426377..427201
/locus_tag="Avi_5425"
/note="LysR transcriptional regulator; Provisional;
Region: rbcR; CHL00180"
/db_xref="CDD:177082"
misc_feature 426626..427222
/locus_tag="Avi_5425"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature order(426671..426676,426680..426685,426692..426694,
426704..426706,426710..426730,427004..427021,
427037..427042,427046..427051)
/locus_tag="Avi_5425"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 427376..427876
/locus_tag="Avi_5426"
/db_xref="GeneID:7381524"
CDS 427376..427876
/locus_tag="Avi_5426"
/codon_start=1
/transl_table=11
/product="Sulfopyruvate decarboxylase alpha subunit"
/protein_id="YP_002547269.1"
/db_xref="GI:222106478"
/db_xref="GeneID:7381524"
/translation="MKPSSVDAVIRGLKKAGVSVVCYLPDSLFKELYPALDADPEIRT
IRVTNEGEGAAICGGVFLSGKRAALVMENSGLRASVEPLARMGLGAGIPVVMLMSYRG
ELGENNWWAIPHGITMEPVLNALRIPYRVVREEDEIEQSIIDAYNWSYNAYYHSAIAL
GGSIVR"
misc_feature 427394..427813
/locus_tag="Avi_5426"
/note="Pyrimidine (PYR) binding domain of POX and related
proteins; Region: TPP_PYR_POX_like; cd07035"
/db_xref="CDD:132918"
misc_feature order(427433..427435,427448..427453,427463..427465,
427475..427477,427502..427522,427529..427531,
427538..427543,427550..427555,427559..427567,
427595..427597,427616..427618,427631..427633,
427643..427645)
/locus_tag="Avi_5426"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(427448..427456,427463..427465,427475..427477,
427505..427507,427511..427522,427526..427528,
427595..427597,427604..427609,427613..427618,
427724..427726,427733..427735)
/locus_tag="Avi_5426"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(427448..427450,427523..427525,427595..427597,
427607..427609)
/locus_tag="Avi_5426"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132918"
gene 427873..428481
/locus_tag="Avi_5427"
/db_xref="GeneID:7381525"
CDS 427873..428481
/locus_tag="Avi_5427"
/codon_start=1
/transl_table=11
/product="thiamine pyrophosphate-requiring enzyme"
/protein_id="YP_002547270.1"
/db_xref="GI:222106479"
/db_xref="GeneID:7381525"
/translation="MKRYDCMKLLAARLENELVILSLGASVDEWYNAAPHMRQASLFQ
QQLGCVTPQAFGLAAGLPHRRIISLDTDGGMMFNLGILATLGNEQPKNLFIVVWDNEC
YQSIGGPPTHTAFGRVDIAAIARGAGIDNALTARTLEEFDSHCEAGLKADVPYVVVAK
VAGTVQPDIKRKHSDGREDKYIFVRHVEASEGIVIMGPSEHN"
misc_feature 427879..>428214
/locus_tag="Avi_5427"
/note="Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and...; Region:
TPP_enzymes; cl01629"
/db_xref="CDD:207466"
misc_feature order(428011..428013,428083..428094,428170..428172,
428176..428178)
/locus_tag="Avi_5427"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48162"
gene 428495..430073
/gene="betA"
/locus_tag="Avi_5429"
/note="choline dehydrogenase; Frameshift (pseudogene)"
/pseudo
/db_xref="GeneID:7381526"
gene 430113..431513
/locus_tag="Avi_5431"
/db_xref="GeneID:7381527"
CDS 430113..431513
/locus_tag="Avi_5431"
/codon_start=1
/transl_table=11
/product="chlorohydrolase"
/protein_id="YP_002547271.1"
/db_xref="GI:222106480"
/db_xref="GeneID:7381527"
/translation="MSMTSSAMIVTADTLLTMDAKNSVISDGAVAIEDGRILAVGSLE
VVKASHPALAIKRIDNALLMPGLINAHAHSGFLRGTAEHLPVWDWLTIHINPMHRVLL
PHEAEAASFLCYVESALSGTTTVVDMWRYMDGSARAAQSIGTRLVAVPYVGEHPDYNY
FETLDNNEAMIETWHRKAGGRINVWVGLEHLFYADAAGQQRAIAMAKQYNTGFHTHCS
EAEVEVGGFIDTYGKRPMHVLEDLGFFEAPRTMLAHAVWLDEAEIELIARYNVSVAHN
PVSNMKLASGIAPIADMLAAGIPVGLGTDGEKENNNFDMFEEMKTASLLGKLRHRDAA
AMDSWQCLRMATILGARAIGLEDEIGSIEVGKRADIIAVRTDTPRMTPLFADGPYFNV
QHNLVHAVRGGDVAMTMVDGQVIVEDGVLKTGDVKAIIADIHGMAPSHFARRAAWLAE
NGGGTKQWISEAEGVK"
misc_feature 430128..431408
/locus_tag="Avi_5431"
/note="N-ethylammeline chlorohydrolase; Provisional;
Region: PRK07228"
/db_xref="CDD:180895"
misc_feature 430134..431378
/locus_tag="Avi_5431"
/note="TRZ/ATZ family contains enzymes from the atrazine
degradation pathway and related hydrolases. Atrazine, a
chlorinated herbizide, can be catabolized by a variety of
different bacteria. The first three steps of the atrazine
dehalogenation pathway are...; Region: ATZ_TRZ_like;
cd01298"
/db_xref="CDD:30041"
misc_feature order(430323..430325,430329..430331,430758..430760,
430767..430769,430872..430874,431025..431027)
/locus_tag="Avi_5431"
/note="active site"
/db_xref="CDD:30041"
misc_feature order(430395..430397,430404..430406,430494..430496,
430560..430565)
/locus_tag="Avi_5431"
/note="putative substrate binding pocket [chemical
binding]; other site"
/db_xref="CDD:30041"
gene 431510..432376
/locus_tag="Avi_5432"
/db_xref="GeneID:7381528"
CDS 431510..432376
/locus_tag="Avi_5432"
/codon_start=1
/transl_table=11
/product="phenylpropionate dioxygenase"
/protein_id="YP_002547272.1"
/db_xref="GI:222106481"
/db_xref="GeneID:7381528"
/translation="MKTTDRVALDDWYVIATAGDVTTQPVQTTLLGQEIEYRLDANGA
PLVRETGADGCYGPALPFQVKYGCLFTTLGTPGKDIVDIAEAQEADRRFVLCGWVTMR
ASGLRVVENFLDMAHFPFVHTDILGSEPHTEVPHYLSEIRRDVDEVWATNCTFFQPRI
AATESDGDFVQLTYRVPSPFVVMLYRVCPTSPNRLDAIALFIQPMEDGLCRAQPVMYL
VDTVSPHTALLNFEQVIFLQDRIIVENQRPLLLPLEPRAEIPTRADSSSIAYRRWLKE
KGLRFGTTAGAA"
misc_feature <431687..432373
/locus_tag="Avi_5432"
/note="Phenylpropionate dioxygenase and related
ring-hydroxylating dioxygenases, large terminal subunit
[Inorganic ion transport and metabolism / General function
prediction only]; Region: HcaE; COG4638"
/db_xref="CDD:34257"
misc_feature 431831..>432091
/locus_tag="Avi_5432"
/note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
ligand-binding domain superfamily; Region: SRPBCC;
cl14643"
/db_xref="CDD:209878"
gene 432376..435522
/locus_tag="Avi_5433"
/db_xref="GeneID:7381529"
CDS 432376..435522
/locus_tag="Avi_5433"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="YP_002547273.1"
/db_xref="GI:222106482"
/db_xref="GeneID:7381529"
/translation="MEVLAPETLELAIAEAQQPGARIVAGATALQLEWAKGLAKPDRM
ISLAELSPALSGIAQVGGHIRIGAMTRLADLLASHEIAAALPLLHSAVKLVASPGVRT
LATLGGNIAGRTGCLLPALLVLDAVLEFAALPDCITVSVADWLAAPAQHGAILTAILI
APQGAGERFVFRKIGLRAAFSPSVINVAGRLRAGQSRVDAARFAVGGGIVPPARLDDA
EALAAGAALDGIDWVGVHNALMETIQAPGDGFRSGAYRRLIAANMLCFGLGGFLPGRA
PSAPVAQPIAFARPPEGELALDRLRMPDRWHIRPDVEQKIRGELAYLTDYRKVGMLVG
RILRAGIAHARILSIDTVAAETLPGVVAVVTHRDVPGLNAFGIVVRDQPALCFDTVRH
RGDPVAAVAAIDEETAEKALALIDVRYAPLPVIDDMEAALEPQAEQVHENGNLQREIL
FTRGDSIQGFAKADHVVEETYITPRQMHGFMETEGGYAFVEPDGRLNMCAGGQHGGRD
RLQLSRILGLDEDDIRVVTSPTGGAFGGKDELSVQPALALLALKAKRPVRLHLSRAES
MLAGQKRHPMKIRMKTACDAQGVLLAQQVDLVADAGAYASLGPSVLETALEHAIGPYV
VGNITTRGRLAYTNNGLCGAFRGFGANQMTFAVECQMDRLAALCGLSPLEIRRRNLRQ
PGSPGTLGQVVSTSERLEDMLVAAGASVLWRKPQGLAAEGEWMIGTGMALNYQGNGLG
SIIPDPAAGRLALTKQGLIEGAFGLDEMGQGLLPAICAAISAELGCARQDVLPLVGDT
LLAPDSGSTTASRGSHVVWASVRLAAPEFRTQMCRAAAGLLGCDPERLVLVPGGFAEP
GNHSGTILLSYADLAAALPEKDLPSVTVRFDFPKTDYTNANARYIFAFGASLARVAVS
RVTGEVRVLDLHQHSAAGPIIDLATYLGQLEGGAVQGLGFTLTEDCPMQEAAYLTGNF
DTYMLPGIQDAPLGLHVFALEDLDPGDALGPRGVGELGIGAVTPAIANAIAAATGYWP
PVMPVAPETLLAYLSVMA"
misc_feature 432376..433167
/locus_tag="Avi_5433"
/note="Aerobic-type carbon monoxide dehydrogenase, middle
subunit CoxM/CutM homologs [Energy production and
conversion]; Region: CoxM; COG1319"
/db_xref="CDD:31510"
misc_feature 433297..435498
/locus_tag="Avi_5433"
/note="xanthine dehydrogenase D subunit; Region: pucD;
TIGR03196"
/db_xref="CDD:132240"
misc_feature 433324..433644
/locus_tag="Avi_5433"
/note="Aldehyde oxidase and xanthine dehydrogenase, a/b
hammerhead domain; Region: Ald_Xan_dh_C; smart01008"
/db_xref="CDD:198076"
misc_feature 433678..435327
/locus_tag="Avi_5433"
/note="Molybdopterin-binding domain of aldehyde
dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738"
/db_xref="CDD:202368"
gene 435519..436004
/gene="xdhA"
/locus_tag="Avi_5434"
/db_xref="GeneID:7381530"
CDS 435519..436004
/gene="xdhA"
/locus_tag="Avi_5434"
/codon_start=1
/transl_table=11
/product="xanthine dehydrogenase"
/protein_id="YP_002547274.1"
/db_xref="GI:222106483"
/db_xref="GeneID:7381530"
/translation="MNLGFTLNGQRVTVECQPETRLTEILRDELYLSATKLACAIGRC
GACSVLLDGRLANACLLMAWQIDGADILTAEGLASHPLGDAVREGLAEENAFQCGYCA
PGFSLALVALFADNPQAGEKDIRAGLEGNLCRCTGYHSIIRGALNAACRIRAAHAISG
D"
misc_feature 435519..435980
/gene="xdhA"
/locus_tag="Avi_5434"
/note="Aerobic-type carbon monoxide dehydrogenase, small
subunit CoxS/CutS homologs [Energy production and
conversion]; Region: CoxS; COG2080"
/db_xref="CDD:32263"
misc_feature 435531..435737
/gene="xdhA"
/locus_tag="Avi_5434"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cl00159"
/db_xref="CDD:206870"
misc_feature order(435621..435626,435633..435635,435642..435644,
435648..435659,435735..435737)
/gene="xdhA"
/locus_tag="Avi_5434"
/note="catalytic loop [active]"
/db_xref="CDD:29262"
misc_feature order(435633..435635,435648..435650,435657..435659)
/gene="xdhA"
/locus_tag="Avi_5434"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29262"
misc_feature 435735..435947
/gene="xdhA"
/locus_tag="Avi_5434"
/note="[2Fe-2S] binding domain; Region: Fer2_2; pfam01799"
/db_xref="CDD:201981"
gene 436006..437520
/gene="dhaS"
/locus_tag="Avi_5435"
/db_xref="GeneID:7381531"
CDS 436006..437520
/gene="dhaS"
/locus_tag="Avi_5435"
/codon_start=1
/transl_table=11
/product="aldehyde dehydrogenase"
/protein_id="YP_002547275.1"
/db_xref="GI:222106484"
/db_xref="GeneID:7381531"
/translation="MTLALDPIGPKNDGAKAFLAHRRKQILIGGFWRDAGSRRWFETA
DPATGEVLAELAEGTAADVDEAVASARAALTSPAWKGLTPSQRGRLLWKVAELIDAHA
EELAELETLDQGKSFRTSRFAEIPASAEQFRYFAGFCTKILGTTIPTSIGYQPQGKQI
FAYTIREPVGVVAAITPWNSPLLMAAMKLAPALAAGCTVVLKPAEETSLTALRLGELM
LEAGLPDGVVNIVTGFGETVGAALCTHPDVDKVAFTGSTEVGKLIVTAAAGNLKKLTL
ELGGKSPAIVMSDADMALTVEGIARGIFSNSGQVCVAASRVYAHRSVCEQVVEGLSKA
ASTLRLGHGLDPAVDLGPLVNRRQADRVAAYVAEGKAEGAEIAAGGSQSGETGTFYAP
TVVTGVRPDMRLMREEIFGPVVAVTPFDDVEDAIAFANDSPYGLAGSVWTRDLSQAHR
LAAQVKAGTIWINCHSYFSPELPKGGHRQSGWGYENGAPGLENYLETKTVCALI"
misc_feature 436078..437505
/gene="dhaS"
/locus_tag="Avi_5435"
/note="NAD(P)+-dependent aldehyde dehydrogenase
superfamily; Region: ALDH-SF; cl11961"
/db_xref="CDD:213126"
misc_feature 436099..437505
/gene="dhaS"
/locus_tag="Avi_5435"
/note="Aldehyde dehydrogenase family; Region: Aldedh;
pfam00171"
/db_xref="CDD:201055"
misc_feature order(436528..436542,436564..436566,436609..436611,
436615..436620,436762..436773,436780..436782,
436789..436794,436834..436842,436936..436938,
437227..437229,437233..437235,437311..437313,
437425..437427)
/gene="dhaS"
/locus_tag="Avi_5435"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143395"
misc_feature order(436540..436542,436834..436836,436927..436929,
436936..436938)
/gene="dhaS"
/locus_tag="Avi_5435"
/note="catalytic residues [active]"
/db_xref="CDD:143395"
gene 437682..438389
/gene="pcaI"
/locus_tag="Avi_5436"
/db_xref="GeneID:7381532"
CDS 437682..438389
/gene="pcaI"
/locus_tag="Avi_5436"
/codon_start=1
/transl_table=11
/product="3-oxoadipate CoA-transferase subunit A"
/protein_id="YP_002547276.1"
/db_xref="GI:222106485"
/db_xref="GeneID:7381532"
/translation="MKKIYGDASAALDGLLFDGMTICAGGFGLCGIPERLIDAIVASG
VKDLTIASNNAGVDGHGLGKLLRTRQVKKMISSYVGENKEFERQFLSGELEVEFCPQG
TLAERMRAGGAGIPGFYTRTGVGTQVAEGKETHIFDGEVYLLERGIRADLSIIKGWRA
DEAGNLMFRKTARNFNAPAATSGKICVAEVEEIVPVGSLDPDAIHLPGIYVRRMINGS
PYDKKIEFRTVTVRGAA"
misc_feature 437682..438326
/gene="pcaI"
/locus_tag="Avi_5436"
/note="Acyl CoA:acetate/3-ketoacid CoA transferase, alpha
subunit [Lipid metabolism]; Region: AtoD; COG1788"
/db_xref="CDD:31974"
gene 438389..439036
/gene="pcaJ"
/locus_tag="Avi_5437"
/db_xref="GeneID:7381533"
CDS 438389..439036
/gene="pcaJ"
/locus_tag="Avi_5437"
/codon_start=1
/transl_table=11
/product="3-oxoadipate CoA-transferase subunit B"
/protein_id="YP_002547277.1"
/db_xref="GI:222106486"
/db_xref="GeneID:7381533"
/translation="MSWSRDEMAARAAKELKDGFYVNLGIGIPTLVANHIPPGVEVTL
QSENGMLGIGPFPFEGEEDADLINAGKQTISELPSSSYFSSADSFAMIRGGHIDLTVL
GAMEVSANGDIANWMVPGKMVKGMGGAMDLVAGVKKVIVVMEHCSKAGESKFIPECTL
PLTGLNVVDMIITDLCVFVRSDRAGTFRLVELAPEVTVADVQAKTTAAFEIAEGL"
misc_feature 438395..439021
/gene="pcaJ"
/locus_tag="Avi_5437"
/note="3-oxoacid CoA-transferase, B subunit; Region:
pcaJ_scoB_fam; TIGR02428"
/db_xref="CDD:188219"
gene 439260..440015
/locus_tag="Avi_5438"
/db_xref="GeneID:7381534"
CDS 439260..440015
/locus_tag="Avi_5438"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_002547278.1"
/db_xref="GI:222106487"
/db_xref="GeneID:7381534"
/translation="MSLTGRIEAMIAERKLSPGDRLPPERSLAAELDVSRSRLREAIQ
QLISRGIVVSRRGGGTFVAIEDAARSLERALEPLLPMVQGEAGYWRDVMEIRKSLDTD
AAYYAALRATDLDKERMTVAFAAMSAAEGGNPQSQARADAAFHMAIAEASHNVVLRQI
VAGLSELLQQSIAQSLMQFYRQPDLGPALERQHGLILDTILAGRPDEARKAAADHLAF
VEENLRVIEDNRAREQRASEALQRPEFQGENLS"
misc_feature 439275..439985
/locus_tag="Avi_5438"
/note="transcriptional regulator PdhR; Reviewed; Region:
pdhR; PRK09464"
/db_xref="CDD:181879"
misc_feature 439275..439448
/locus_tag="Avi_5438"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(439326..439328,439332..439337,439359..439373,
439377..439382,439389..439391,439419..439424,
439428..439439)
/locus_tag="Avi_5438"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 439530..439910
/locus_tag="Avi_5438"
/note="This entry represents the C-terminal ligand binding
domain of many members of the GntR family; Region: FCD;
smart00895"
/db_xref="CDD:197963"
gene 440012..441151
/gene="lldA"
/locus_tag="Avi_5439"
/db_xref="GeneID:7381535"
CDS 440012..441151
/gene="lldA"
/locus_tag="Avi_5439"
/codon_start=1
/transl_table=11
/product="L-lactate dehydrogenase"
/protein_id="YP_002547279.1"
/db_xref="GI:222106488"
/db_xref="GeneID:7381535"
/translation="MIISSSTDYREAARRRLPPFLFHYIDGGAYSEHTMRRNIDDLAD
LALRQRVLKSVGTVDISTTLFDEELAMPVVLAPVGLTGMYARRGEVQAARAAEKKGIP
LTLSTVSVCPIEEVQAASNRPIWFQLYVLRDRGFMKNALERAWAAGIRKLVFTVDMPV
PGARYRDAHSGMSGPNASLRRIIQAVMHPTWAIDVGLLGKPHDLGNVSAYRQQKTNLA
DYVGWLGENFDPSIGWKDLEWIRDFWKGPMIIKGILDPEDAKDAVRFGADGIIVSNHG
GRQLDGVLSSARALPAIAAAVKGDLTILADSGIRSGLDVVRMIAQGADGVLIGRAFVY
ALAAAGQAGVENLLDLFAKEMRVAMTLTGARSIAEISPDSLVRGL"
misc_feature 440012..441148
/gene="lldA"
/locus_tag="Avi_5439"
/note="L-lactate dehydrogenase; Provisional; Region: lldD;
PRK11197"
/db_xref="CDD:183033"
misc_feature 440033..441127
/gene="lldA"
/locus_tag="Avi_5439"
/note="Family of homologous FMN-dependent
alpha-hydroxyacid oxidizing enzymes. This family occurs in
both prokaryotes and eukaryotes. Members of this family
include flavocytochrome b2 (FCB2), glycolate oxidase
(GOX), lactate monooxygenase (LMO), mandelate...; Region:
alpha_hydroxyacid_oxid_FMN; cd02809"
/db_xref="CDD:73371"
misc_feature order(440081..440083,440327..440329,440396..440398,
440480..440482,440501..440503,440762..440764,
440834..440836,440843..440845,440999..441001)
/gene="lldA"
/locus_tag="Avi_5439"
/note="active site"
/db_xref="CDD:73371"
misc_feature order(440081..440083,440396..440398,440501..440503,
440834..440836,440843..440845)
/gene="lldA"
/locus_tag="Avi_5439"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73371"
misc_feature order(440327..440329,440396..440398,440480..440482,
440762..440764,440834..440836,440843..440845,
440999..441001)
/gene="lldA"
/locus_tag="Avi_5439"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73371"
misc_feature order(440396..440398,440501..440503,440834..440836)
/gene="lldA"
/locus_tag="Avi_5439"
/note="putative catalytic residues [active]"
/db_xref="CDD:73371"
gene 441497..442336
/locus_tag="Avi_5440"
/db_xref="GeneID:7381536"
CDS 441497..442336
/locus_tag="Avi_5440"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547280.1"
/db_xref="GI:222106489"
/db_xref="GeneID:7381536"
/translation="MAFTAVQAGAYLHHVAFESSNPERLARFYADAMDMKLEKVGDEW
ICEGPKRRFIAVAGADKKLAYSGLACRNAEGLALLRARVDAEGIAVLASPSPYFEDGA
FAIRDPDGRMVCFGVAKPDKPGAKGIQGPTQHLTYASEDVAAFVDFYVGKLGFQLTDR
VLHEDGRLATAFTTSNHEHHTIACFYTPGRVGVDHHSYEAGEWNYIRDWCDHLATHDI
QLSWGPGRHGPGNNLFIFITDPDGNWIEISAELEVIYDRDTMDWPQHPRTLNKWGEAI
LRS"
misc_feature 441530..441856
/locus_tag="Avi_5440"
/note="This domain superfamily is found in a variety of
structurally related metalloproteins, including the type I
extradiol dioxygenases, glyoxalase I and a group of
antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
cl14632"
/db_xref="CDD:211465"
misc_feature 441530..441841
/locus_tag="Avi_5440"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature order(441536..441538,441548..441550,441659..441661,
441665..441667,441689..441691,441806..441808,
441830..441832,441836..441838)
/locus_tag="Avi_5440"
/note="active site"
/db_xref="CDD:211348"
misc_feature order(441536..441538,441689..441691,441836..441838)
/locus_tag="Avi_5440"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:211348"
misc_feature 441893..442285
/locus_tag="Avi_5440"
/note="C-terminal domain of type I, class II extradiol
dioxygenases; catalytic domain; Region:
ED_TypeI_classII_C; cd08343"
/db_xref="CDD:211355"
misc_feature 441896..442237
/locus_tag="Avi_5440"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature order(441896..441898,441902..441904,442010..442012,
442034..442036,442079..442081,442085..442087,
442175..442177,442202..442204,442232..442234)
/locus_tag="Avi_5440"
/note="active site"
/db_xref="CDD:211355"
misc_feature order(441896..441898,442079..442081,442232..442234)
/locus_tag="Avi_5440"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:211355"
gene 442385..443236
/locus_tag="Avi_5441"
/db_xref="GeneID:7381537"
CDS 442385..443236
/locus_tag="Avi_5441"
/codon_start=1
/transl_table=11
/product="2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway)"
/protein_id="YP_002547281.1"
/db_xref="GI:222106490"
/db_xref="GeneID:7381537"
/translation="MQFLSYTRLGRAGFGVRVDNGIVDLTGRLAADVVTLKQAIEADL
LESARDYISGRRAEFTEADIALLPVVPDAGKILCVGLNYETHRAETKRPDAKYPTIFT
RFADTQIAHRQPILKPRVSDHLDYEAELAVVIGRGGRYIAEENALDHVAGYTCYNDAT
IRDWQRHTFQFTPGKNFPATGAFGPQLVTPDEVGDYTKLKITGRLNGQVMQDATLADL
IFPIATLISYCSHFTPLQPGDVILTGTPGGVGDRREPPLFMKAGDVFEVDIPGVGLLV
NAVGTEP"
misc_feature 442430..443233
/locus_tag="Avi_5441"
/note="2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway) [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: MhpD; COG0179"
/db_xref="CDD:30528"
misc_feature 442607..443221
/locus_tag="Avi_5441"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; pfam01557"
/db_xref="CDD:201859"
gene 443429..445072
/locus_tag="Avi_5443"
/db_xref="GeneID:7381538"
CDS 443429..445072
/locus_tag="Avi_5443"
/codon_start=1
/transl_table=11
/product="3-(3-hydroxyphenyl)propionate hydroxylase;
3-(3-hydroxy-phenyl)propionate hydroxylase
FAD/NAD(P)-binding"
/protein_id="YP_002547282.1"
/db_xref="GI:222106491"
/db_xref="GeneID:7381538"
/translation="MNAEELETEVEVVIVGAGPTGLTLANLLGGMGVSVALVERNLTT
VQEPRAVSIDDESMRTMQAIGLEDAVEKIVVRGYGSRYLSPAGELFLTVEPTSRDYGF
DKRNAFQQPELEALLREGLARYPNVIQFFGWDMQTFSQTADSVTVEIAHAATGTRVIR
ARYMVASDGGRSPTRGKLGVHLVGSTFVERWLIVDLVRTENRFRHTQVHCDPARPCIS
LPGPDNIRRYEFMLHTNEDEKDATEEAFVRGLLERVGPDRDCEFRRVRVYTFHARLAD
RWRDGNIFLAGDAAHLTPPFAGQGMNSGLRDAHNLAWKLAEALRGDMPSDFLDSYEIE
RRPHAWEMIALALRMGQVMMPENGIKALLTRAAFRILGLYPPVRDYFAQMRYKPKPRF
RQGLLWPDSRPEKETMVGRLVPQPVVEDSHRHRVLLDRVLPDGPVALVFDEFPDRALS
VDVIRALEAAGATVVGLTPEWMNPIDGIFPVHRDVGRLFSSGPMKSYLGHVLLLRRDR
YIAAATPIAEALHLVEKLGMLGPRSVIRAEVKDSLAAAS"
misc_feature 443474..445006
/locus_tag="Avi_5443"
/note="3-(3-hydroxyphenyl)propionate hydroxylase;
Validated; Region: mhpA; PRK06183"
/db_xref="CDD:180449"
misc_feature 443474..444436
/locus_tag="Avi_5443"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature <444704..>444850
/locus_tag="Avi_5443"
/note="Protein of unknown function (DUF3186); Region:
DUF3186; pfam11382"
/db_xref="CDD:151822"
gene 445697..446917
/gene="livJ"
/locus_tag="Avi_5444"
/db_xref="GeneID:7381539"
CDS 445697..446917
/gene="livJ"
/locus_tag="Avi_5444"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(branched amino acid)"
/protein_id="YP_002547283.1"
/db_xref="GI:222106492"
/db_xref="GeneID:7381539"
/translation="MMTELKFTRRGALGLLAAAPLAGWAGQGRAASQPIKIGLVLTMS
GPFASSGQIMANAAKLYLETEGKAVLGDIPVELVIRDDGGANPDVAKRLVQELVTRDK
VQYLGGFQWTPNANAVAPLLMKAKMPCVLFNAAGANTTQLAPWYVRTAFTHWQVNQPL
GEWAAAKRGFKRAYLLTTDFAPGHDAEEAFTKGFTSKGGTIVASVKMPIQSTNFVPFL
LAAKQEKPDVVFAFHPGGVQASAFMRAYQEADLRGAGIQLIGPGDLTSDEELPNIGAA
ALGVLTAGQYSMAGDRPANAAFVEAWKKAYTFMPVRPNYMAVGAYDGMHLICSAIAAT
KGASDAAGAMAAMKTFKAEQSPRGPISIDPETRDIVQNIYIREVREKNGELANVELET
IPAVKDPWKVEHPL"
misc_feature 445796..446839
/gene="livJ"
/locus_tag="Avi_5444"
/note="Periplasmic binding protein; Region: Peripla_BP_6;
pfam13458"
/db_xref="CDD:205636"
misc_feature 445802..446830
/gene="livJ"
/locus_tag="Avi_5444"
/note="Type 1 periplasmic binding fold superfamily;
Region: Periplasmic_Binding_Protein_Type_1; cl10011"
/db_xref="CDD:209116"
gene 447089..447946
/gene="livH"
/locus_tag="Avi_5445"
/db_xref="GeneID:7381540"
CDS 447089..447946
/gene="livH"
/locus_tag="Avi_5445"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002547284.1"
/db_xref="GI:222106493"
/db_xref="GeneID:7381540"
/translation="MTLVEVAFQSLAYASVLYLISVGLSVTLGLMGFVNLAHGVFAMA
GGYIAATAISAWGLPWPLMVICAPLAVALLAAVAEKLLYARLYGRSELDQVLFCIGLI
FIVGALARLFFGPLMRPVVIPEFLAQNLTVGPFSFYLYKLVVIGIGILTAAFILFVLE
RSRIGAIIRASVENRGMAESIGIRTKHVFMATFAFGGALAALGGMLGADVFGLNPSYA
FDILVYVQIVVAVAGLGTLRGSFVAALLVGAVQTVSAYYVPAFGTVMLFLLVFILLLV
RPRGLFGRV"
misc_feature 447119..447934
/gene="livH"
/locus_tag="Avi_5445"
/note="Transmembrane subunit (TM) of Escherichia coli LivH
and related proteins. LivH is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivH_like;
cd06582"
/db_xref="CDD:119324"
misc_feature 447614..447670
/gene="livH"
/locus_tag="Avi_5445"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119324"
gene 447956..448954
/locus_tag="Avi_5446"
/db_xref="GeneID:7381541"
CDS 447956..448954
/locus_tag="Avi_5446"
/codon_start=1
/transl_table=11
/product="branched-chain amino acid ABC transporter
permease"
/protein_id="YP_002547285.1"
/db_xref="GI:222106494"
/db_xref="GeneID:7381541"
/translation="MSDRSALVSPPSTFTGFLRRKHGFNPADGLIVLALALVPLLGDD
YYALGSQILITIIFALSLDLLVGYAGIVTLGHAAFFGVGAYATGIASKYGWGEPLSGL
LIGAMAAGLVGAVVGAIVLRTARFTLLMLTLCTVFLFGEIANKATWLTGGVDGLVGME
TWPVLGLYEFDLLGQVGYWFSALVFLLVWLGVRRLVHSPFGQSIMAIRDNPGRAAAIG
IAVRPRTLLIFVISCLLAGLAGALQAEVNQFVGLKDMSFELSATILVMLALGGSGRLY
GAIIGPAVYLIAQDILSKDNPVMWQLWLGIILVVLVLFAPGGITRILAQLRGRIGR"
misc_feature 448109..448912
/locus_tag="Avi_5446"
/note="Transmembrane subunit (TM) of Escherichia coli LivM
and related proteins. LivM is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivM_like;
cd06581"
/db_xref="CDD:119323"
misc_feature 448589..448645
/locus_tag="Avi_5446"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119323"
gene 448951..449694
/locus_tag="Avi_5447"
/db_xref="GeneID:7381542"
CDS 448951..449694
/locus_tag="Avi_5447"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002547286.1"
/db_xref="GI:222106495"
/db_xref="GeneID:7381542"
/translation="MSALQLENLTLQFGGLVVTNNVSLVLEKGARHALIGPNGAGKTT
LINLITGRLTPRKGAIFLDGIDLKGMAQHKRVGLGLVRNFQVTNLFTSFTALENIALA
IGEREGFGFSMAGHHGFPAKVVAEAEEIASRMRLANVPHVPVRDLAYGQQRLVELAVA
MALRPKVLLLDEPAAGLPAADHEVILTILDELPADVAVLLIEHDMPLVFRFAREITVL
AEGTIIARGTPEEIRHDANVRAAYLGNRS"
misc_feature 448960..449682
/locus_tag="Avi_5447"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivG; COG0411"
/db_xref="CDD:30760"
misc_feature 448960..449664
/locus_tag="Avi_5447"
/note="The Mj1267/LivG ABC transporter subfamily is
involved in the transport of the hydrophobic amino acids
leucine, isoleucine and valine. MJ1267 is a
branched-chain amino acid transporter with 29% similarity
to both the LivF and LivG components of the E; Region:
ABC_Mj1267_LivG_branched; cd03219"
/db_xref="CDD:72978"
misc_feature 449056..449079
/locus_tag="Avi_5447"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72978"
misc_feature order(449065..449070,449074..449082,449203..449205,
449461..449466,449557..449559)
/locus_tag="Avi_5447"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72978"
misc_feature 449194..449205
/locus_tag="Avi_5447"
/note="Q-loop/lid; other site"
/db_xref="CDD:72978"
misc_feature 449389..449418
/locus_tag="Avi_5447"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72978"
misc_feature 449449..449466
/locus_tag="Avi_5447"
/note="Walker B; other site"
/db_xref="CDD:72978"
misc_feature 449473..449484
/locus_tag="Avi_5447"
/note="D-loop; other site"
/db_xref="CDD:72978"
misc_feature 449545..449565
/locus_tag="Avi_5447"
/note="H-loop/switch region; other site"
/db_xref="CDD:72978"
gene 449691..450398
/gene="livF"
/locus_tag="Avi_5448"
/db_xref="GeneID:7381543"
CDS 449691..450398
/gene="livF"
/locus_tag="Avi_5448"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(branched chain amino acid)"
/protein_id="YP_002547287.1"
/db_xref="GI:222106496"
/db_xref="GeneID:7381543"
/translation="MTADLLEIRNVVSGYGPTRIINGIDLTLPMGGGLALLGRNGAGK
TTLLCTIAGRLLLKEGSIRFNSGEIGGLSPSQRCRLGIGFVPQERQIFATLSVEENLR
IADLRRGWTMERVYELFPRLAERRKNGGNQLSGGEQQMLAIGRALMSQPTCLLLDEPF
EGLAPVIVDMLLEALIKLRKESEMSMIIVEQHAKLALEIAEQGMVIERGQVRVSGSRE
SLLQDWTEIEDMLAVTH"
misc_feature 449697..450389
/gene="livF"
/locus_tag="Avi_5448"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivF; COG0410"
/db_xref="CDD:30759"
misc_feature 449706..450359
/gene="livF"
/locus_tag="Avi_5448"
/note="LivF (TM1139) is part of the LIV-I bacterial
ABC-type two-component transport system that imports
neutral, branched-chain amino acids. The E. coli
branched-chain amino acid transporter comprises a
heterodimer of ABC transporters (LivF and LivG), a...;
Region: ABC_TM1139_LivF_branched; cd03224"
/db_xref="CDD:72983"
misc_feature 449802..449825
/gene="livF"
/locus_tag="Avi_5448"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72983"
misc_feature order(449811..449816,449820..449828,449949..449951,
450159..450164,450261..450263)
/gene="livF"
/locus_tag="Avi_5448"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72983"
misc_feature 449940..449951
/gene="livF"
/locus_tag="Avi_5448"
/note="Q-loop/lid; other site"
/db_xref="CDD:72983"
misc_feature 450087..450116
/gene="livF"
/locus_tag="Avi_5448"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72983"
misc_feature 450147..450164
/gene="livF"
/locus_tag="Avi_5448"
/note="Walker B; other site"
/db_xref="CDD:72983"
misc_feature 450171..450182
/gene="livF"
/locus_tag="Avi_5448"
/note="D-loop; other site"
/db_xref="CDD:72983"
misc_feature 450249..450269
/gene="livF"
/locus_tag="Avi_5448"
/note="H-loop/switch region; other site"
/db_xref="CDD:72983"
gene complement(450460..452307)
/gene="hppD"
/locus_tag="Avi_5449"
/db_xref="GeneID:7381544"
CDS complement(450460..452307)
/gene="hppD"
/locus_tag="Avi_5449"
/codon_start=1
/transl_table=11
/product="4-hydroxyphenylpyruvate dioxygenase"
/protein_id="YP_002547288.1"
/db_xref="GI:222106497"
/db_xref="GeneID:7381544"
/translation="MAAIAKAGFSGVEIFENDFLTYDASPRDVAKMVADHGLDITLFQ
PFRDFEGMPELHRARAFERAERKFEIMDELGTDLMLICSNVSPISLGGIDRAAADFQE
LGERAAKHGVRVGYEALAWGRHVNDHRDAWEVVRRANHANVGLILDSFHTLSRKIDPN
SIRSIPGDKIFIVQLADAPLFDMDLLYWSRHFRNMPCEGDLPVVDFMRAVAATGYTGP
LSLEIFNDQFRGGSPRAIAEDGHRSLVYLMDQVQRLEPDIRLSAPAMPAPVETQGVEF
VEFATSVEEKQDLAAFLATLGFSKTATHRNRDLDLYTQGDIRILINTDTTNNSFAGAS
YAIHGTSAYAFGMKVGHAEDALKRATALGATSFSEPRKPGEVPVPAIQGVSNGVIYFL
DDTPALSGIWKQEFKDVDADQAPANTRLTRIDHLAQTTRYDEMLTCLLFYGSIFATRR
TPMVDVVDPGGLVRSQAIESKPDPRFRVTLNGADNRKTVAGKFLEEGFGTSIQHIALA
TDDIFATAQALSACGFQALTISRNYYDDLEARFGLEPDFADALRSASILYDRDDNGEY
FQIYSRTFGEGFFFEIVERRGAYGGYGAMNAPFRIAAQRRQLRPDGVPR"
misc_feature complement(451705..452307)
/gene="hppD"
/locus_tag="Avi_5449"
/note="Xylose isomerase-like TIM barrel; Region:
AP_endonuc_2; pfam01261"
/db_xref="CDD:201692"
misc_feature complement(450478..451557)
/gene="hppD"
/locus_tag="Avi_5449"
/note="4-hydroxyphenylpyruvate dioxygenase and related
hemolysins [Amino acid transport and metabolism / General
function prediction only]; Region: COG3185"
/db_xref="CDD:32998"
misc_feature complement(451087..451488)
/gene="hppD"
/locus_tag="Avi_5449"
/note="N-terminal domain of 4-hydroxyphenylpyruvate
dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS);
Region: HPPD_N_like; cd08342"
/db_xref="CDD:176690"
misc_feature complement(order(451288..451290,451378..451380,
451384..451386,451432..451437,451441..451449))
/gene="hppD"
/locus_tag="Avi_5449"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176690"
misc_feature complement(450490..451050)
/gene="hppD"
/locus_tag="Avi_5449"
/note="C-terminal domain of 4-hydroxyphenylpyruvate
dioxygenase (HppD) and hydroxymandelate Synthase (HmaS);
Region: HPPD_C_like; cd07250"
/db_xref="CDD:176673"
misc_feature complement(order(450517..450522,450532..450534,
450565..450567,450598..450600,450796..450798,
450841..450843,450865..450867,450871..450873,
450913..450915,451033..451035))
/gene="hppD"
/locus_tag="Avi_5449"
/note="active site"
/db_xref="CDD:176673"
misc_feature complement(order(450565..450567,450796..450798,
451033..451035))
/gene="hppD"
/locus_tag="Avi_5449"
/note="Fe binding site [ion binding]; other site"
/db_xref="CDD:176673"
gene 452505..453230
/locus_tag="Avi_5451"
/db_xref="GeneID:7381545"
CDS 452505..453230
/locus_tag="Avi_5451"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_002547289.1"
/db_xref="GI:222106498"
/db_xref="GeneID:7381545"
/translation="MMKRDATTRDGKEARPAKGEPGKRDPAKRDPEGVRRDILSVAME
EFSQNGLSGARIDEIAARTRTSKRMIYYYFGDKEGLYQRVLEEAYGKVRGGEMDLELE
GLDPIAALDKLCRFTFDHHRRNPAFIRMVIIENIHHGRHMQLSETIRGLNQPAIEALH
GVLRRGQEQGLFRQGIDPLELHWQISALSFFNVSNAASFSVIFGNALFTADGQETLSR
HVADMVLRYVLRAEHISPIEQRG"
misc_feature 452571..453059
/locus_tag="Avi_5451"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 452616..452756
/locus_tag="Avi_5451"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(453205..453648)
/gene="aroQ"
/locus_tag="Avi_5453"
/db_xref="GeneID:7381546"
CDS complement(453205..453648)
/gene="aroQ"
/locus_tag="Avi_5453"
/note="catalyzes the formation of 3-dehydroshikimate from
3-dehydroquinate in chorismate biosynthesis"
/codon_start=1
/transl_table=11
/product="3-dehydroquinate dehydratase"
/protein_id="YP_002547290.1"
/db_xref="GI:222106499"
/db_xref="GeneID:7381546"
/translation="MSLFFILNGPNLNLLGQRQPEIYGRETLVDVEDNCRAIAEAAGH
SIFFAQSNREYEIIDWVHEARGKAAGIVINPGAFTHTSVAILDALNTFEAPVIEVHIS
NIHKREVFRHHSYVSTRAEGVIAGLGIEGYEMALRHLISRVARSG"
misc_feature complement(453223..453639)
/gene="aroQ"
/locus_tag="Avi_5453"
/note="Dehydroquinase (DHQase), type II. Dehydroquinase
(or 3-dehydroquinate dehydratase) catalyzes the reversible
dehydration of 3-dehydroquinate to form
3-dehydroshikimate. This reaction is part of two metabolic
pathways: the biosynthetic shikimate pathway...; Region:
DHQase_II; cd00466"
/db_xref="CDD:63885"
misc_feature complement(order(453316..453318,453376..453378,
453385..453390,453397..453399,453418..453420,
453463..453465,453472..453474,453481..453495,
453610..453612,453616..453618))
/gene="aroQ"
/locus_tag="Avi_5453"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:63885"
misc_feature complement(order(453316..453318,453343..453351,
453388..453390,453409..453411,453418..453423,
453427..453429,453580..453582,453595..453597))
/gene="aroQ"
/locus_tag="Avi_5453"
/note="active site"
/db_xref="CDD:63885"
misc_feature complement(order(453226..453228,453235..453237,
453247..453249,453259..453261,453268..453276,
453280..453291,453295..453300,453331..453336,
453340..453342))
/gene="aroQ"
/locus_tag="Avi_5453"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:63885"
gene complement(453645..454514)
/gene="aroE"
/locus_tag="Avi_5454"
/db_xref="GeneID:7381547"
CDS complement(453645..454514)
/gene="aroE"
/locus_tag="Avi_5454"
/note="AroE; catalyzes the conversion of shikimate to
3-dehydroshikimate"
/codon_start=1
/transl_table=11
/product="shikimate 5-dehydrogenase"
/protein_id="YP_002547291.1"
/db_xref="GI:222106500"
/db_xref="GeneID:7381547"
/translation="MTEKPILHVGLIGTDIQLSKSPAMHMREGAAHGLDYRYELIDIH
VRNLPESALPDLLDECQTRGFAGTNITHPFKQAVIPFLDDLSEDARMLGAVNTVVFRD
GKRIGHNTDWSGFYESFRRGLPDVQLKRALLIGAGGAGVAVAHAALKLGIEQLDIFDQ
DLTRAEGLAAALNARFSEGRAHAVTAPSQSLAEADGLIHATPVGMPAHPGLPVAADLI
EPRHWVADIVYMPLVTELIATARDKGCQTLPGGGMAVFQAVGAFRLFCGYEPDAERMS
AHFTELCVSEAAA"
misc_feature complement(453666..454511)
/gene="aroE"
/locus_tag="Avi_5454"
/note="shikimate 5-dehydrogenase; Reviewed; Region:
PRK12549"
/db_xref="CDD:183586"
misc_feature complement(454221..454484)
/gene="aroE"
/locus_tag="Avi_5454"
/note="Shikimate dehydrogenase substrate binding domain;
Region: Shikimate_dh_N; pfam08501"
/db_xref="CDD:149523"
misc_feature complement(453714..454187)
/gene="aroE"
/locus_tag="Avi_5454"
/note="NAD(P) binding domain of Shikimate dehydrogenase;
Region: NAD_bind_Shikimate_DH; cd01065"
/db_xref="CDD:133443"
misc_feature complement(order(453744..453746,453753..453755,
453828..453830,454182..454184))
/gene="aroE"
/locus_tag="Avi_5454"
/note="shikimate binding site; other site"
/db_xref="CDD:133443"
misc_feature complement(order(453753..453758,453765..453767,
453834..453836,453909..453917,454035..454040,
454098..454100,454107..454109))
/gene="aroE"
/locus_tag="Avi_5454"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133443"
gene complement(454586..455344)
/locus_tag="Avi_5456"
/db_xref="GeneID:7381548"
CDS complement(454586..455344)
/locus_tag="Avi_5456"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase (amino
acid)"
/protein_id="YP_002547292.1"
/db_xref="GI:222106501"
/db_xref="GeneID:7381548"
/translation="MQQSTAQVPLIALEGVGKWYGAYHALKDINLTVRKGEKIVLCGP
SGSGKSTLIRCINHLEEIQEGKITVEGTTLTSASRTIDAVRREVGMVFQSFNLFPHMT
ILENCTLAPMRVKGLQKQQAEEVARKYLDRVHILDQADKYPAQLSGGQQQRVAIARAL
CMEPKAMLFDEPTSALDPEMVKEVLDTMIGLARDGMTMICVTHEMGFARQVADRVVFM
ASAQIIEEGPPEEFFRNPQHQRTRTFLGEILAHH"
misc_feature complement(454598..455320)
/locus_tag="Avi_5456"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:31323"
misc_feature complement(454676..455314)
/locus_tag="Avi_5456"
/note="HisP and GlnQ are the ATP-binding components of the
bacterial periplasmic histidine and glutamine permeases,
repectively. Histidine permease is a multisubunit complex
containing the HisQ and HisM integral membrane subunits
and two copies of HisP. HisP...; Region:
ABC_HisP_GlnQ_permeases; cd03262"
/db_xref="CDD:73021"
misc_feature complement(455195..455218)
/locus_tag="Avi_5456"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73021"
misc_feature complement(order(454736..454738,454832..454837,
455066..455068,455192..455200,455204..455209))
/locus_tag="Avi_5456"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73021"
misc_feature complement(455066..455077)
/locus_tag="Avi_5456"
/note="Q-loop/lid; other site"
/db_xref="CDD:73021"
misc_feature complement(454880..454909)
/locus_tag="Avi_5456"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73021"
misc_feature complement(454832..454849)
/locus_tag="Avi_5456"
/note="Walker B; other site"
/db_xref="CDD:73021"
misc_feature complement(454814..454825)
/locus_tag="Avi_5456"
/note="D-loop; other site"
/db_xref="CDD:73021"
misc_feature complement(454730..454750)
/locus_tag="Avi_5456"
/note="H-loop/switch region; other site"
/db_xref="CDD:73021"
gene complement(455358..456197)
/locus_tag="Avi_5457"
/db_xref="GeneID:7381549"
CDS complement(455358..456197)
/locus_tag="Avi_5457"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter substrate-binding
protein"
/protein_id="YP_002547293.1"
/db_xref="GI:222106502"
/db_xref="GeneID:7381549"
/translation="MKSKTMTIKRRTALALIAAAAAMPLVAPATAFAGTLEQAKAKGK
VVIGIQGDNSPWGFVNSSGVQDGLDADIGKAYADYLGVKAEFVPLAVANRIPALMTGK
VDILFATMGMTADRAKTIQFSKPYAGNVLSVYGPKDKKIGSYDDLTGVSVGVPKSSAM
DTAITAGAGSKASILRFDDDAANIQALISGQVEAVGGNQFYGDRLNAAAAGKYETKFD
LVTLYNGAGMRPGEKDWNESINSFIDKIKADGQLAKIYAKWMKRDVPAFPDSLPDIPF
TAK"
misc_feature complement(455418..456065)
/locus_tag="Avi_5457"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature complement(455421..456065)
/locus_tag="Avi_5457"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature complement(order(455604..455606,455721..455723,
455850..455852,455925..455927,456039..456041))
/locus_tag="Avi_5457"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature complement(order(455625..455627,455643..455645,
455655..455657))
/locus_tag="Avi_5457"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature complement(455523..455540)
/locus_tag="Avi_5457"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene complement(456328..456978)
/locus_tag="Avi_5458"
/db_xref="GeneID:7381550"
CDS complement(456328..456978)
/locus_tag="Avi_5458"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter permease"
/protein_id="YP_002547294.1"
/db_xref="GI:222106503"
/db_xref="GeneID:7381550"
/translation="MASIGPNELFFLLQGLKWTLALTAIGFVGGGFFGLCVALARVAD
SAALRKATAGYIAVFQGTPLLMQLFVVYYGVALLGLDVDAWIAVAIAFTLHASAFLGD
IWRGGIQAVPKGQTEAAKALGLHYGSIMKDVVLPQAFKVSLPATIGFLVQLIKGTSLA
AIVGFVELSRAGQIVSNQTFRPLTVFAIVGIIYFLICWPLSLWGARKEKRLQAAAR"
misc_feature complement(456391..456933)
/locus_tag="Avi_5458"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(456397..456402,456406..456411,
456418..456423,456451..456456,456493..456498,
456505..456516,456535..456537,456544..456549,
456589..456591,456640..456642,456649..456654,
456664..456666,456670..456675,456682..456684,
456688..456690,456694..456699,456763..456765,
456769..456774,456781..456810,456814..456825,
456853..456855,456868..456873,456880..456885))
/locus_tag="Avi_5458"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(456499..456516,456763..456807))
/locus_tag="Avi_5458"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(456421..456423,456451..456453,
456460..456462,456496..456498,456712..456714,
456763..456765))
/locus_tag="Avi_5458"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(456568..456570,456580..456585,
456601..456639))
/locus_tag="Avi_5458"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(456989..457657)
/locus_tag="Avi_5459"
/db_xref="GeneID:7381551"
CDS complement(456989..457657)
/locus_tag="Avi_5459"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter permease"
/protein_id="YP_002547295.1"
/db_xref="GI:222106504"
/db_xref="GeneID:7381551"
/translation="MGYTLDFSVVIERLPELILACLATIGLAIAGMSIATIIGIFGVV
ARRSPSRILRSATIGFVELIRNTPFLVQIFFIFFALPQIGVRLNPTVTAIVALGLNGG
AYAIEIIRGGVDSIGKGQVEAGLALGLHRAQILRHIILKPALRAVYPSLTSQFVMLTL
TTSVCTSIAAYELTSVAQKIEADTFRSFEVYFSITLLYLVISSLMMGAFALISRIFFS
YPVK"
misc_feature complement(457010..457615)
/locus_tag="Avi_5459"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature complement(457040..457588)
/locus_tag="Avi_5459"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(457040..457042,457049..457054,
457061..457066,457070..457075,457082..457087,
457115..457120,457157..457162,457169..457180,
457199..457201,457208..457213,457253..457255,
457304..457306,457313..457318,457328..457330,
457334..457339,457346..457348,457352..457354,
457358..457363,457427..457429,457433..457438,
457445..457474,457478..457489,457517..457519,
457532..457537,457544..457549))
/locus_tag="Avi_5459"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(457163..457180,457427..457471))
/locus_tag="Avi_5459"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(457085..457087,457115..457117,
457124..457126,457160..457162,457376..457378,
457427..457429))
/locus_tag="Avi_5459"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(457232..457234,457244..457249,
457265..457303))
/locus_tag="Avi_5459"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(458285..459175)
/locus_tag="Avi_5460"
/db_xref="GeneID:7381552"
CDS complement(458285..459175)
/locus_tag="Avi_5460"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547296.1"
/db_xref="GI:222106505"
/db_xref="GeneID:7381552"
/translation="MKNTRTLLGAALFLTGCFTAANAAENSNTQYAPGASQFYAGAIP
PFEGFYFLSQTSYFSANRVNDGKGREIPIDFKVKATVETLRFIYVSDIRIGDAQLWGQ
LVLPLIHLDISNTFARDSGFNLGDATATVGLSWHPDQNQTFITGIDIGIPTGAYDENA
LANAGLNHWSVQPTVAYHYSDPQGLEFATAARVIFNSENTATDYKTGNEFVLDYAVGW
NFGKIRVGATGYYIKQFTDDKGPGVASDGHRGEGLAIGPSLTYNFNPGLGISASWQHD
VVAKNRTEGNTLWVNLATKF"
misc_feature complement(458288..459175)
/locus_tag="Avi_5460"
/note="Putative MetA-pathway of phenol degradation;
Region: Phenol_MetA_deg; cl01768"
/db_xref="CDD:207476"
gene complement(459765..461528)
/gene="treZ"
/locus_tag="Avi_5461"
/db_xref="GeneID:7381553"
CDS complement(459765..461528)
/gene="treZ"
/locus_tag="Avi_5461"
/codon_start=1
/transl_table=11
/product="malto-oligosyltrehalose trehalohydrolase"
/protein_id="YP_002547297.1"
/db_xref="GI:222106506"
/db_xref="GeneID:7381553"
/translation="MQDMTFGPVLYGNGTIFSLWAPLQEKVLLKIEGQEPRPMTAGDN
GWYSAEVPEVGAGCRYNFILEDGLAVPDPASRFQPDDVHGPSEVIDPAYAWQQTEWQG
LPWEEIVIYELHVGSFTPAGTFTAIIERLDHLKNLGVTALQLMPISDFPGRWNWGYDG
VLPYAPDSSYGRPEDLKRLVDEAHARGICIFLDVVYNHFGPDGNYLPAYAPIFTDKHI
TPWGPGVNYDGDQSEAVREFVVRNAIYWVDEFRIDGLRFDAVHAIEDERKPHILHDIA
MRTRACALGRAVHLIVENEDNNADLLERNKNGAPIHFTAQWNDDIHHVLHITATGENF
GYYQDYANDMSKLGRALAEGFVYQGEHMPYSGKERGMPSTHLPPTAFISFIQNHDQIG
NRALGDRMAASQPSEALKALAAVYLLAPQIPMLFMGEEWGAKTPFPFFCDFNEELNEA
VRQGRRKELSRLPGFDADDASDPTAQTTFSGAKLSWEPDQQDGEILQFYRELLALRKE
KIVPLLQDAHGHAGNYSSLGSVTIVRWTLGSHNLTLTANLTAETVENPIYTNGECLFT
FGTQPGNNLGPWAVVWRIEPC"
misc_feature complement(461262..461495)
/gene="treZ"
/locus_tag="Avi_5461"
/note="N-terminal Early set domain associated with the
catalytic domain of Maltooligosyl trehalose
trehalohydrolase (also called Glycosyltrehalose
trehalohydrolase) and similar proteins; Region:
E_set_MTHase_like_N; cd02853"
/db_xref="CDD:199883"
misc_feature complement(459861..461486)
/gene="treZ"
/locus_tag="Avi_5461"
/note="malto-oligosyltrehalose trehalohydrolase; Region:
trehalose_TreZ; TIGR02402"
/db_xref="CDD:200184"
misc_feature complement(460005..461315)
/gene="treZ"
/locus_tag="Avi_5461"
/note="Alpha amylase catalytic domain found in
Glycosyltrehalose trehalohydrolase (also called
Maltooligosyl trehalose Trehalohydrolase); Region:
AmyAc_GTHase; cd11325"
/db_xref="CDD:200464"
misc_feature complement(order(460362..460364,460650..460652,
460755..460757))
/gene="treZ"
/locus_tag="Avi_5461"
/note="catalytic site [active]"
/db_xref="CDD:200464"
misc_feature complement(order(460350..460352,460359..460364,
460560..460562,460572..460574,460644..460646,
460650..460652))
/gene="treZ"
/locus_tag="Avi_5461"
/note="active site"
/db_xref="CDD:200464"
misc_feature complement(459780..460037)
/gene="treZ"
/locus_tag="Avi_5461"
/note="Domain of unknown function (DUF3459); Region:
DUF3459; pfam11941"
/db_xref="CDD:204789"
gene 461742..464273
/gene="treY"
/locus_tag="Avi_5462"
/db_xref="GeneID:7381554"
CDS 461742..464273
/gene="treY"
/locus_tag="Avi_5462"
/codon_start=1
/transl_table=11
/product="malto-oligosyltrehalose synthase"
/protein_id="YP_002547298.1"
/db_xref="GI:222106507"
/db_xref="GeneID:7381554"
/translation="MTIPTATYRLQFRNGITFDHAIDLIPHLKSMSISHLYASPIFTA
TTGSTHGYDVVDANEIDPVIGGKAGFDRMCAALAKADIGLILDIVPNHMAASVENAWW
YDVLRNGSRSAYAGHFDIDWSRKLTLPVLGKTLEDALGDGELTIIRDDNADRFSLAYF
ETHIPLSDESIEQALVSEKTDRATLVEVLASPEKVRALLDAQHWQLQHWKQAAESLSY
RRFFEVTGLVGVCVEKPQVFEESHQLILDLVRSGQVQGLRIDHVDGLADPAGYLDRLR
EAAGPQTYITVEKILGAGEVIASSWPVSGTTGYEFITALSQLYIDGDGLERLQQAYND
TDAGAADYVKGLRDAKTRMVQRNFKGEVTRLVVLAQSIGTGHGEDELRKAIQELLIAF
PVYRTYGYHGGLDAQDKIVLEHVVAQARLWGVDEGALGVIERLLLGGFEAEAADEFRT
RFQQLSGPVMAKALEDTLFYRYNRLIAANEVGGEPAHPPGGVSAFHAAMAERMQTQPH
GLTASSTHDTKRGEDARARLYTLSEGADAWIDGVSRWRQMHRGNLTSLLDGPAPDPNV
EWMLYQALAGIWLAPTEATDPATLTDRFLAYTEKALREAKVRTDWAEPNEAFEQAVRS
YAEQLVSPENRSFLTDFSDTLQPFMAAGEVNSLSQTLIKLTAPGVPDIYQGTEGKDDS
LVDPDNRRIIDYQALAAEVSAPANEGPVSFIQRKQRLIREVLALRSRHASLFNNGDYV
PVEVTGHARDHVIAFARVQGNDIALTIAPRLVFGRIDPETARVAAAFWADTRIVWPES
VQGPLHTILSGRSFNREQMLVSDLLDGNDIALLVTPSLTATDIQR"
misc_feature 461742..464246
/gene="treY"
/locus_tag="Avi_5462"
/note="maltooligosyl trehalose synthase; Provisional;
Region: PRK14511"
/db_xref="CDD:184719"
misc_feature 461757..463931
/gene="treY"
/locus_tag="Avi_5462"
/note="Alpha amylase catalytic domain found in
maltooligosyl trehalose synthase (MTSase); Region:
AmyAc_MTSase; cd11336"
/db_xref="CDD:200475"
misc_feature order(461889..461891,461895..461897,462015..462017,
462402..462404,462519..462521,462603..462605,
462609..462611,462924..462926,463134..463136,
463182..463184,463290..463292,463794..463796,
463806..463808)
/gene="treY"
/locus_tag="Avi_5462"
/note="active site"
/db_xref="CDD:200475"
misc_feature order(462519..462521,462603..462605,463290..463292)
/gene="treY"
/locus_tag="Avi_5462"
/note="catalytic site [active]"
/db_xref="CDD:200475"
gene 464389..464820
/locus_tag="Avi_5463"
/db_xref="GeneID:7381555"
CDS 464389..464820
/locus_tag="Avi_5463"
/codon_start=1
/transl_table=11
/product="osmotically inducible protein OsmC"
/protein_id="YP_002547299.1"
/db_xref="GI:222106508"
/db_xref="GeneID:7381555"
/translation="MKIEKYGSAQWSGGLKDGKGKVSTQSGALNAYPYGFNTRFEGVT
GSNPEELIGAAHAACFTMALSMMLGEAGLTAESLETKANVTLEKLEAGFAITAIELVL
KGKVPGADEARFTEIANQAKAGCPVSKALAAVPISLSVTLG"
misc_feature 464401..464805
/locus_tag="Avi_5463"
/note="peroxiredoxin, OsmC subfamily; Region:
osmo_induc_OsmC; TIGR03562"
/db_xref="CDD:163326"
gene 464859..465923
/locus_tag="Avi_5465"
/db_xref="GeneID:7381556"
CDS 464859..465923
/locus_tag="Avi_5465"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547300.1"
/db_xref="GI:222106509"
/db_xref="GeneID:7381556"
/translation="MLGRAFVLFSRDDIRLFDAPCDKRLARARHTQQLDNHGSLPIAR
DAVMPTLSDEGQARLSDIATRHGVSFGAVEHLLMALMAGNGYQAQFNHPDLGGMGQWS
QGGMTMVGDMFNNGLKARVDNLCSDIATLLQTSDLHRPASGYASSSQSQSQGNGGFGA
FSSGVSLFVPGSISAANWWPADLGFPASTGAQNNLRYAFFPSSRRLAIDIGGRTTVYD
TRDHQIGGFSQQQGGDQTLSFTSQYGLVRISELDVVSPGATAPVTNVVGEAATAPLAP
VMPPVATVFDDPEPAREPLASEIQAFSAGTSARPPAASPAGSDDEIFAKIEKLAALHG
RGILTDKEYQDKKADLLSRL"
misc_feature 465822..465914
/locus_tag="Avi_5465"
/note="Short C-terminal domain; Region: SHOCT; pfam09851"
/db_xref="CDD:204331"
gene 466285..467784
/locus_tag="Avi_5466"
/db_xref="GeneID:7381557"
CDS 466285..467784
/locus_tag="Avi_5466"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547301.1"
/db_xref="GI:222106510"
/db_xref="GeneID:7381557"
/translation="MLQFISGVSHLGAYQAKSSISPARKTVVIVGGGFAGASVARFLA
ERQDEDLQILVFEPRATLGAGLAYDTDDPALRLNVEASRMIADAREPLAFAEWLRQSG
ALADDPDAQVECTGSDVPQVFARREAFGRFMAERMAPYLEEGRIQHIRETVESVTRIG
SRWLVTGNLGAWIEADIVVMAATHPAPKAPRALQSALQGHPRFLTNPVAGPSLCGFRA
TDRVLVVGMGLTAADIVASLSVRGHRGEITAFSRRGMSSRGHTLQPQDWSCSFSEDDC
RSVRSLLRAVRRAVADAQAHGVTWHAVTDALRKQGQTIWARLNATERKRLLRHARRLW
DVHRYRLPPQAQAIWQQRLAEGSLTLASGRMIKIERGIETIAIDLVVASTGLVERKLF
DWVVLATGPDHASVLKSQSMLLTLESTGHLQADAYGLGIACDETGQAIGIDGRPQADL
FIAGPLARGTFGELMGVPEVSRQAELVADRIANAVLASRSMASHSIEAR"
misc_feature 466354..467748
/locus_tag="Avi_5466"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4529"
/db_xref="CDD:34178"
misc_feature 466366..466839
/locus_tag="Avi_5466"
/note="FAD-NAD(P)-binding; Region: NAD_binding_9;
pfam13454"
/db_xref="CDD:205632"
gene complement(467837..468664)
/locus_tag="Avi_5467"
/db_xref="GeneID:7381558"
CDS complement(467837..468664)
/locus_tag="Avi_5467"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(aliphatic sulfonate)"
/protein_id="YP_002547302.1"
/db_xref="GI:222106511"
/db_xref="GeneID:7381558"
/translation="MTATTVTRLRPIQEAHPATRQEQASQPVLASARPAFSFRNVRKS
FGTQTVLDGINLDVAEGEFLAIIGKSGCGKSTLLRLLAGLDKPSSGELIHHADKSDAA
RVRMMFQEPRLLPWAKIDDNVAVGLTGIAKGKEALSAARALLEEVGLGARASEWPSVL
SGGQKQRVALARALAAHPHILALDEPLGALDALTRIEMQQLLERIWQKQRFTAVLVTH
DVSEAVALADRIVVIDAGRIALDLKVSLPRPRRHATAECAAIEAQILGKLLGEAAQA"
misc_feature complement(467927..468559)
/locus_tag="Avi_5467"
/note="NrtD and SsuB are the ATP-binding subunits of the
bacterial ABC-type nitrate and sulfonate transport
systems, respectively. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:73052"
misc_feature complement(467840..468550)
/locus_tag="Avi_5467"
/note="aliphatic sulfonates transport ATP-binding subunit;
Provisional; Region: ssuB; PRK11247"
/db_xref="CDD:183055"
misc_feature complement(468440..468463)
/locus_tag="Avi_5467"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(order(468011..468013,468110..468115,
468338..468340,468437..468445,468449..468454))
/locus_tag="Avi_5467"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73052"
misc_feature complement(468338..468349)
/locus_tag="Avi_5467"
/note="Q-loop/lid; other site"
/db_xref="CDD:73052"
misc_feature complement(468158..468187)
/locus_tag="Avi_5467"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73052"
misc_feature complement(468110..468127)
/locus_tag="Avi_5467"
/note="Walker B; other site"
/db_xref="CDD:73052"
misc_feature complement(468092..468103)
/locus_tag="Avi_5467"
/note="D-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(468005..468025)
/locus_tag="Avi_5467"
/note="H-loop/switch region; other site"
/db_xref="CDD:73052"
gene complement(468670..469524)
/locus_tag="Avi_5468"
/db_xref="GeneID:7381559"
CDS complement(468670..469524)
/locus_tag="Avi_5468"
/codon_start=1
/transl_table=11
/product="aliphatic sulfonate ABC transporter permease"
/protein_id="YP_002547303.1"
/db_xref="GI:222106512"
/db_xref="GeneID:7381559"
/translation="MQNSNLRPDAGHAPSLAPSLGLAWFRAGLSRLAGNSIGWALPLL
ILIAWEASSRAGLLQQNVLPAPSAVAEAFWRLTLSGELPTNIGVSTVRALAGFAIGGG
IGFALGLLNGLSALSRGITDTTLQMVRNIPHLALIPLVILWFGIDEEAKLFLVALGVF
FPIYVNTLLGIQSVDPQLVEMGRLYGMKPYRLFRKVILPGALPAIFAGLRYGLGIMWL
TLIVAETIAASSGLGYMAMQAREFLLIDVVVLSILIYALLGKLADLLARFLERVFLQW
HPAYQTAR"
misc_feature complement(468682..469455)
/locus_tag="Avi_5468"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature complement(468799..469173)
/locus_tag="Avi_5468"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(468820..468825,468850..468855,
468862..468873,468892..468894,468901..468906,
468946..468948,468997..468999,469006..469011,
469021..469023,469027..469032,469039..469041,
469045..469047,469051..469056,469102..469104,
469108..469113,469120..469149,469153..469164))
/locus_tag="Avi_5468"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(468856..468873,469102..469146))
/locus_tag="Avi_5468"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(468820..468822,468829..468831,
468853..468855,469102..469104))
/locus_tag="Avi_5468"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(468925..468927,468937..468942,
468958..468996))
/locus_tag="Avi_5468"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(469565..470533)
/locus_tag="Avi_5469"
/db_xref="GeneID:7381560"
CDS complement(469565..470533)
/locus_tag="Avi_5469"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(aliphatic sulfonate)"
/protein_id="YP_002547304.1"
/db_xref="GI:222106513"
/db_xref="GeneID:7381560"
/translation="MTELTRRLFTTGALGSLAFSLALGAAFRAQAEGLGTLKIGYQKT
GLPVIARQQGVIEAALKSQGTSVSWVEFAAGPPLVEALNVGSVHVGWTGDAPPIFGQA
SGAAIVYAAALPPNGKGEGIVVKASSGIKDLAGLKGRKVAVGKGTSAHNLVVVALEKA
GIGFDEITPVYLGPADAAAAFASDKVDAWAVWDPFLAIAETRYDLVTLARSSEVLDVK
TYFLANRDFAASHPDTLATVLKALTVAAEWSANNRDQLAAALHEITGVPLNAQTLAAN
RAEFGIFKITDEIVATQQETADRFFRLGLIPKKINIKDAVWVAPAN"
misc_feature complement(469574..470425)
/locus_tag="Avi_5469"
/note="ABC transporter, substrate-binding protein,
aliphatic sulfonates family; Region: SsuA_fam; TIGR01728"
/db_xref="CDD:130789"
misc_feature complement(<470048..470371)
/locus_tag="Avi_5469"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature complement(order(470090..470092,470219..470221,
470309..470311))
/locus_tag="Avi_5469"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
gene 470916..471881
/gene="ssuA"
/locus_tag="Avi_5471"
/db_xref="GeneID:7381561"
CDS 470916..471881
/gene="ssuA"
/locus_tag="Avi_5471"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(aliphatic sulfonate)"
/protein_id="YP_002547305.1"
/db_xref="GI:222106514"
/db_xref="GeneID:7381561"
/translation="MINRRQTLGLLGAASTILALPAIRTAQAATTTLRIGWQKNGVLA
LAKRTGALEKRLATRGVTVTWAEFTSGPPLLEALGAGALDFGPTGDVPPLFAQAAGGN
LLYVGTYKGAPSGTALLVHKDSPIQSIADLKGKKLAFKRGSSAHNFVVKALKTAGLTR
SDVKAADLSPADAGAAFKSGNVDAWAIWDPYFAVAETDPNARVLTTASGIVDSWSFYF
GNGDFTSKNPEVITDVIDELRKTGVWAQSHLDETITALAEITGVPRDTTKTVLTRPGA
DLGSVSTLNDEAIAYQQALADEFHALQILPKPLKIAEIVWRPKAS"
misc_feature 471012..471866
/gene="ssuA"
/locus_tag="Avi_5471"
/note="ABC transporter, substrate-binding protein,
aliphatic sulfonates family; Region: SsuA_fam; TIGR01728"
/db_xref="CDD:130789"
misc_feature <471249..471653
/gene="ssuA"
/locus_tag="Avi_5471"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature order(471426..471428,471438..471440,471456..471458)
/gene="ssuA"
/locus_tag="Avi_5471"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature 471549..471566
/gene="ssuA"
/locus_tag="Avi_5471"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene 471907..473097
/gene="ssuD"
/locus_tag="Avi_5472"
/db_xref="GeneID:7381562"
CDS 471907..473097
/gene="ssuD"
/locus_tag="Avi_5472"
/codon_start=1
/transl_table=11
/product="sulfonate monooxygenase"
/protein_id="YP_002547306.1"
/db_xref="GI:222106515"
/db_xref="GeneID:7381562"
/translation="MTKTSNAQNARPIDFLWFIPTSGDGTYLGSNDLTRPVDHGYLRE
IASAVDRLGYYGVLLPTGVACEESFVTAASLAAHTQKLKFLVAIRPGTASPAYYARLA
VALDRVSNGRTLLNIVVGGSPTELAGDGIFVSHDERYAHADEFFTVWEDLLSKGHADL
NGKYIRAEGARLGFPPVQSPRPPLYFGGSSDAGIDFAARRVDKYLTWGEPPAQVKEKV
DAVRAAAARSGRDVSFGIRLHFIVRETDEEAWAAADKLISKLSDETIRETQARFAKES
DSVGQRRMTELHNGRRDKLEVSPNLWAGVGLVRAGAGTALVGSPETVAERLREYQAIG
IDTVIGSGYPHLEEAYRVAELLFPKLGLGRSNENDIKHSDFADSKVFAGGGHSGGFRV
VSGS"
misc_feature 471943..472668
/gene="ssuD"
/locus_tag="Avi_5472"
/note="Alkanesulfonate monoxygenase is the monoxygenase of
a two-component system that catalyzes the conversion of
alkanesulfonates to the corresponding aldehyde and
sulfite. Alkanesulfonate monoxygenase (SsuD) has an
absolute requirement for reduced flavin...; Region:
Alkanesulfonate_monoxygenase; cd01094"
/db_xref="CDD:29426"
misc_feature 471946..472986
/gene="ssuD"
/locus_tag="Avi_5472"
/note="alkanesulfonate monooxygenase, FMNH(2)-dependent;
Region: alk_sulf_monoox; TIGR03565"
/db_xref="CDD:132604"
misc_feature order(471958..471960,471970..471972,472099..472101,
472258..472260,472318..472320,472474..472479,
472519..472521,472615..472617,472621..472623)
/gene="ssuD"
/locus_tag="Avi_5472"
/note="active site"
/db_xref="CDD:29426"
misc_feature order(472090..472107,472114..472116,472123..472128,
472135..472137,472186..472188,472192..472197,
472204..472209,472216..472218,472225..472227,
472276..472278,472285..472290,472402..472404,
472408..472419,472423..472428)
/gene="ssuD"
/locus_tag="Avi_5472"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29426"
misc_feature 472165..472170
/gene="ssuD"
/locus_tag="Avi_5472"
/note="non-prolyl cis peptide bond; other site"
/db_xref="CDD:29426"
misc_feature order(472264..472290,472309..472317,472402..472443,
472624..472635,472654..472668)
/gene="ssuD"
/locus_tag="Avi_5472"
/note="insertion regions; other site"
/db_xref="CDD:29426"
gene 473367..473834
/locus_tag="Avi_5475"
/db_xref="GeneID:7381563"
CDS 473367..473834
/locus_tag="Avi_5475"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547307.1"
/db_xref="GI:222106516"
/db_xref="GeneID:7381563"
/translation="MLTKKGKYGLKALVDLAQLGPGETAFISEIALRNNIPKKFLDTI
LLELRNGGILRSKKGPGGGYSLSHPASEIRIGHAIRLLDGPLAPIRCASRTAFEACDD
CADPVNCQVRRSMTQVRDAIAAILDNMTLEQFVATPSLNELTQDEQQEKRATA"
misc_feature 473367..473822
/locus_tag="Avi_5475"
/note="Predicted transcriptional regulator
[Transcription]; Region: COG1959"
/db_xref="CDD:32142"
misc_feature 473370..473612
/locus_tag="Avi_5475"
/note="Transcriptional regulator; Region: Rrf2; pfam02082"
/db_xref="CDD:202106"
gene complement(473989..474537)
/locus_tag="Avi_5477"
/db_xref="GeneID:7381564"
CDS complement(473989..474537)
/locus_tag="Avi_5477"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547308.1"
/db_xref="GI:222106517"
/db_xref="GeneID:7381564"
/translation="MTILTMPRKDANATPYPQPSADPGLLKSAMRHVSGQVSVITAGQ
GPERTGATVTSATALSVDPPTVIVNINRTSSSYPVIRKYGHFGLNILASHDEPVANRF
AGVGGLKGEARYDGSNWLVGPSGASLLVGALAAIDCEVEEIIDRHSHGIIIGRVISIQ
LGEGNPLAYQNGRYGNFTPILG"
misc_feature complement(474004..474450)
/locus_tag="Avi_5477"
/note="Flavin reductase like domain; Region:
Flavin_Reduct; pfam01613"
/db_xref="CDD:201889"
gene complement(474902..476074)
/locus_tag="Avi_5479"
/db_xref="GeneID:7381565"
CDS complement(474902..476074)
/locus_tag="Avi_5479"
/codon_start=1
/transl_table=11
/product="FMNH2-dependent monooxygenase"
/protein_id="YP_002547309.1"
/db_xref="GI:222106518"
/db_xref="GeneID:7381565"
/translation="MGTFSPVFDRLARPVAFIKAEDEALGCAHLLAETAMSADDGSYE
KTILDHLLRSGLLGISVSTDYGGIDVSNVLLSTICCVLAKACSTLGAMLAGHYSALEL
LRSHGSEAQKSYFFAAALAGMRLARVKAPSAASLKDRGLHLSYNGLGWSLNGTGMASP
NATSADWIMVSVHDQVEEPAHLFFPGGTATMTPIANSLSDKSQPDRGEPVLFRDQRGE
KDAQLQTRRPAQGPDVPQAMELLLQAAVELGRGKAAFSQLFGSPVLAPSHLPDETFEP
DFDPSKTGAIADAALRLATAEAVIEKAASAIDAAQIGTQDRHRHTAFLIASAANAAAV
EASTIAQSVAADPRFAHATTPLGGVEFQSAEAAIIVSLLRKGTLGLSGFSDDDSNG"
misc_feature complement(<475565..475960)
/locus_tag="Avi_5479"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
gene complement(476348..477259)
/locus_tag="Avi_5481"
/db_xref="GeneID:7381566"
CDS complement(476348..477259)
/locus_tag="Avi_5481"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002547310.1"
/db_xref="GI:222106519"
/db_xref="GeneID:7381566"
/translation="MDQLSAMRAFIRVVETGNFTRAAERLDMPKATVTNLIQGLEAHL
QTKLLNRTTRRVMVTTDGALYYERAVQIVSELAELDESLSNAQSTPRGRLRVEMSGAF
SDWIVVPSLCDFHQKFPDMHIDLGVSDRMVDYLAENVDCALRAGTPSDQSLIARRVCD
VEMITCVAPRYIEKFGIPAHPRELENHHYCVNYFSSNNSRKMPFTFKKDKEELEISAR
YIVSVNDSRTYMTCAQNGLGIAPIPRFMAASLLASGELVQVLAEWRREPLPLYIVYPP
NRHLSNKVRVFVDWLVKLLLEARLNEG"
misc_feature complement(476363..477250)
/locus_tag="Avi_5481"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(477074..477250)
/locus_tag="Avi_5481"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(476378..476986)
/locus_tag="Avi_5481"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
CrgA-like, contains the type 2 periplasmic binding fold;
Region: PBP2_CrgA_like_3; cd08472"
/db_xref="CDD:176161"
misc_feature complement(order(476450..476452,476531..476533,
476582..476584,476777..476779,476783..476785,
476825..476827,476942..476944,476954..476956))
/locus_tag="Avi_5481"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176161"
misc_feature complement(order(476555..476557,476564..476569,
476588..476602,476693..476695,476879..476899,
476903..476905,476915..476917,476924..476929,
476933..476938,476948..476953))
/locus_tag="Avi_5481"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176161"
gene 477468..478265
/locus_tag="Avi_5482"
/db_xref="GeneID:7381567"
CDS 477468..478265
/locus_tag="Avi_5482"
/codon_start=1
/transl_table=11
/product="lipase esterase"
/protein_id="YP_002547311.1"
/db_xref="GI:222106520"
/db_xref="GeneID:7381567"
/translation="MSVQVKDMVLDKLAVGPVSARVYQGAEYGKGPPVVLFFHAGAFM
ASGVVDSSVAACLARTGAIVVVPDYNAPLGPVFPSPLEVGFSIFSYLANKRAGLGDRK
SLLLLAGVEAGGNIAASVALKARDHFANELDGQILLSPLLDPFMGTASIREAEAIGMR
ERWAEGWSRYLSGGGCHPYAAPCLCSRLAGVAPALVLSAEDDPLRDESLAFAQSLKQA
GVKTCSQILPSGKGWSSIYGSQQSHASTWEPELESQFEDFVKQISIR"
misc_feature 477570..478133
/locus_tag="Avi_5482"
/note="alpha/beta hydrolase fold; Region: Abhydrolase_3;
pfam07859"
/db_xref="CDD:203783"
gene 478324..479514
/gene="mexE"
/locus_tag="Avi_5483"
/db_xref="GeneID:7381403"
CDS 478324..479514
/gene="mexE"
/locus_tag="Avi_5483"
/codon_start=1
/transl_table=11
/product="HlyD family secretion protein"
/protein_id="YP_002547312.1"
/db_xref="GI:222106521"
/db_xref="GeneID:7381403"
/translation="MSSRKQRWALMGAGLGLVVSISAVSVVLQLPMSAAATAASAAAP
APAVPVTVSKVSSRNFTHWELFSGRLEAVERVDVRPRVGGAIQSVHFREGALVKAGDL
LFTIDPAPYQAAVDQAEGQFASAEAKVDLARIELDRGLKLSGNSTISQSDMDQRRNSF
TQAQAAMGTARAQLQSAQLELDYTQVRAPVSGRVGKLEVTAGNLVASGSSSSVLTTLV
SVDPIYASFNVSEQLVAKALSQLPQTGAALADIDRIPVEIGTLADDGTPIKGKLQLIN
NQVDAASGTIGVRAVFDNPGGRLIPGQFVRVRMGQPVPENKILVSERAIGTDQDKKFV
FVVDGDNKVNYRQIQLGAVAEGQRVVESGLTAGDTIVVNGLQRIKPGAVVVPQPEEKL
AASK"
misc_feature 478483..479484
/gene="mexE"
/locus_tag="Avi_5483"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
misc_feature 478549..478692
/gene="mexE"
/locus_tag="Avi_5483"
/note="Biotin-lipoyl like; Region: Biotin_lipoyl_2;
pfam13533"
/db_xref="CDD:205711"
gene 479695..482895
/gene="mexF"
/locus_tag="Avi_5484"
/db_xref="GeneID:7381404"
CDS 479695..482895
/gene="mexF"
/locus_tag="Avi_5484"
/codon_start=1
/transl_table=11
/product="AcrB/AcrD/AcrF family protein"
/protein_id="YP_002547313.1"
/db_xref="GI:222106522"
/db_xref="GeneID:7381404"
/translation="MNISRFFVDRPVFAGVLSVLIVVAGLIGMRSLPISEYPDVVPPS
IVVRATYPGANPKVIAETVATPLEEQINGVEGMLYMSSQATSDGVMTLTVTFKLGTDP
DQAQQLVQNRVSQAEPRMPEEVKSLGVTTVKSSPDLMMVVNLISPDNRYDITYLRNYG
VLNIKDRLARIAGVGQVQIFGSGDYSMRIWIDPQQAAEHGLAASDITTAIRAQNVQAA
AGIIGGSPSLPGVDVQLNVNAQGRLQTPEDFGNIIVKSGANGQITRLRDVARVELGAS
DYALRSLLDSKAAVAIPVFQAPGSNAITISDEVVRTMDELQLAMPEGVKYEIVYDTTK
FVRSSIEKVVDTLLEAVALVVLVVILFLQTWRASIIPLIAVPVSIIGTFAVMYAFGFS
INALSLFGLVLAIGIVVDDAIVVVENVERNIENGLSPRQATYRAMKEVSGPIIAIALV
LVAVFVPLAFISGLSGQFYRQFALTIAISTVISALNSLTLSPALAALLLKGHHAPKDR
LTRGLDFMLGWFFRGFNRVFGAGSNAYGKSVGGLLSRKSIVMVVYLALAGATYGLFNA
VPGGFVPAQDKQYLIGFAQLPDAASLDRTEDVIKRMSDIALAQPGVAHAIAFPGLSIN
GFTNSSNAGIVFVTLKDFDERKTPDLSGGAIAMQLNQKFSSIQDAFIAMFPPPPVQGL
GTTGGFKLQLEDRAGLGYQALDEATKAFLAKAYQTPELTGLFSSFQINVPQLYADLDR
AKAEQLGVSVTDVFQTLQIYLGSLYVNDFNAFGRTYSVRAQADAKFRATPDNIGQLKV
RSASGQMIPLSALLRVDPTTGPERTNRYNGFLAADINGGPAPGFSSGQAQAAIEKIAA
DVLPKGIGYEWTDLTYQQILAGSSGFLVFPLALLLVYLVLAAQYESLTLPLAIIMIVP
MGVLAALTGIWLTGGDNNIFTQIGLIVLVGLSAKNAILIVEFARELEFEGRTPVQAAI
EASRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRAAMGIAVFSGMIGVTVFGIFMTP
VFYVLIRKLAGNRPLVQHNHDDHEQDNDRPMRMAAE"
misc_feature 479701..482805
/gene="mexF"
/locus_tag="Avi_5484"
/note="AcrB/AcrD/AcrF family; Region: ACR_tran; pfam00873"
/db_xref="CDD:201483"
gene complement(482978..483934)
/locus_tag="Avi_5485"
/db_xref="GeneID:7381405"
CDS complement(482978..483934)
/locus_tag="Avi_5485"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002547314.1"
/db_xref="GI:222106523"
/db_xref="GeneID:7381405"
/translation="MRFKNLDLNLLVALDTLIRVRNVSRAAEEMFITQSAMSNALGRL
RDYFDDPLLIQVGRSMELSPLAASLELPLRDIIVRIEAAVVSTPSFIPHESTRSINLI
VSDYTLNTIMPPFLRQVTALAPGVQIHFQPQQNYPHLLLERGEADLLVAPSDFCSTNH
PSEPFLEDQICCVVDVNGPLAEGPMTEKDFLEAGHVVMQPPNGGETFAQRACDRLGLK
IKVEASTFSFSSLPFLIRGSKRIAMVQRSLAECMLNLGGIRIMDPPFPLPPLLQCLQW
HSYRTRDPALVWFRSQMHEAAARVRQEKMEPDRHKEHDIVSG"
misc_feature complement(483026..483880)
/locus_tag="Avi_5485"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(483755..483880)
/locus_tag="Avi_5485"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(483047..483640)
/locus_tag="Avi_5485"
/note="The C-terminal substsrate binding domain of NodD
family of LysR-type transcriptional regulators that
regulates the expression of nodulation (nod) genes;
contains the type 2 periplasmic binding fold; Region:
PBP2_NodD; cd08462"
/db_xref="CDD:176151"
misc_feature complement(order(483119..483121,483323..483325,
483431..483433,483602..483604,483614..483619,
483623..483625))
/locus_tag="Avi_5485"
/note="putative substrate binding pocket [chemical
binding]; other site"
/db_xref="CDD:176151"
misc_feature complement(order(483182..483184,483224..483226,
483233..483238,483245..483250,483257..483271,
483353..483355,483539..483541,483545..483559,
483563..483568,483575..483580,483584..483589,
483596..483601,483608..483613,483620..483622))
/locus_tag="Avi_5485"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176151"
gene 484167..485339
/locus_tag="Avi_5486"
/db_xref="GeneID:7381406"
CDS 484167..485339
/locus_tag="Avi_5486"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547315.1"
/db_xref="GI:222106524"
/db_xref="GeneID:7381406"
/translation="MFKYFPTNYVWNLSVDLSIEMGARMGEIEEMCAPLQEAAKAPDA
AGTQAFRETWIKMADKLVSLAEEDEAKGRLISAGDKLIRAANYMLTAERLLAHGSEGR
VALYKRFLDAFEKGLKLSGSSCRRVEIPYEGKHLSALYVPAEGVEGAAPLLVQVNGLD
STKEMKLLVGLPVWLAKRGVASLIVDQPGTGEALRLQGLTARYDSEHWASRVVDWLEG
QPDIDAKRIGMEGVSLGGYYCPRAVAFEPRFACGVVWGANHDWRDVQKKRLAREGNLP
VPHYWSHVMWVWGAKDMDDFMEIAEKVHLNGILDRIHVPFLVTHGEKDSQIPLQWAHA
TYDQLVNSPNRELKIFDERTGGIQHSSFDNSANAGAFIADWVAEVLGGRIAVRKNS"
misc_feature 484686..485315
/locus_tag="Avi_5486"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 485336..486016
/locus_tag="Avi_5487"
/db_xref="GeneID:7381407"
CDS 485336..486016
/locus_tag="Avi_5487"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547316.1"
/db_xref="GI:222106525"
/db_xref="GeneID:7381407"
/translation="MTIKLMLCGRRRLGQTLAEQRAHMKDHHGKLVLDYIAHDPVTAP
QRYVQNHAFDGVYFGGEPQVKALSIGLDFVTEVWAQDLAGLKASRETPFYLQNLKPDE
PEMVDHDTLIGLPYSEEIIIPVQSREGAVKVFLAWFGETPDVHAVLDVIDTASHGLLG
YSRNTPLFPGPVAAIDEYWLPNEGAGVAFTKACRDAINGLRPGDTSFSLTIAREYVLH
AGHLDLAK"
misc_feature 485375..485653
/locus_tag="Avi_5487"
/note="EthD domain; Region: EthD; pfam07110"
/db_xref="CDD:203582"
gene 486049..486996
/locus_tag="Avi_5488"
/db_xref="GeneID:7381408"
CDS 486049..486996
/locus_tag="Avi_5488"
/codon_start=1
/transl_table=11
/product="Glyoxalase/bleomycin resistance"
/protein_id="YP_002547317.1"
/db_xref="GI:222106526"
/db_xref="GeneID:7381408"
/translation="MNIIGPDYLVFGVDNVAACCEYLTAFGLKPVDVTDAGGLFEALD
GTGIIVRHASDPSLPPPLPTANMLRQQVYGVRAAEDLDAIEAELSKDRRVTRLSNGSI
EVKDSHGLELKFQVSIRREFDMPAEKINAPGAPAQRKPNEIGVWEEMPALPRSLSHVV
LFIPDIEIATEFYCDRLGFVVTDTLSGAGPFLRPKANDDHHTLFFIRTPDYMKGCEHL
AFHMGGPTELMVAGTRFVKKGYQSFWGPGRHKFGSNWFWYFNSPLGCHVEYDADMDKH
DETWVGRDVPISAEASQIILFEMREKWMPGGGPPPGAKS"
misc_feature 486505..486906
/locus_tag="Avi_5488"
/note="C-terminal domain of Burkholderia sp. NF100 MhqB
and similar proteins; MhqB is a type I extradiol
dioxygenase involved in the catabolism of
methylhydroquinone, an intermediate in the degradation of
fenitrothion; Region: MhqB_like_C; cd08360"
/db_xref="CDD:176708"
misc_feature 486514..486825
/locus_tag="Avi_5488"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature order(486520..486522,486526..486528,486619..486621,
486649..486651,486697..486699,486703..486705,
486793..486795,486799..486804,486820..486822,
486850..486852)
/locus_tag="Avi_5488"
/note="putative active site [active]"
/db_xref="CDD:176708"
misc_feature order(486520..486522,486697..486699,486850..486852)
/locus_tag="Avi_5488"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:176708"
gene 487014..487373
/locus_tag="Avi_5489"
/db_xref="GeneID:7381409"
CDS 487014..487373
/locus_tag="Avi_5489"
/codon_start=1
/transl_table=11
/product="ferredoxin subunits of nitrite reductase and
ring-hydroxylating dioxygenase"
/protein_id="YP_002547318.1"
/db_xref="GI:222106527"
/db_xref="GeneID:7381409"
/translation="MPSRQFLCRQDAVGEGEAKGFGPLEGFRRKIIVIRRDGKLHAWL
DACPHYSSGTPMAWKTDAYFNGEKTHLACHSHGALFDLETGECVLGPCLGQGLTRVDI
AVGEEGEVFALVTAQEE"
misc_feature 487023..487346
/locus_tag="Avi_5489"
/note="Rieske domain; a [2Fe-2S] cluster binding domain
commonly found in Rieske non-heme iron oxygenase (RO)
systems such as naphthalene and biphenyl dioxygenases, as
well as in plant/cyanobacterial chloroplast b6f and
mitochondrial cytochrome bc(1) complexes; Region: Rieske;
cd03467"
/db_xref="CDD:58538"
misc_feature order(487152..487154,487158..487160,487167..487169,
487230..487232,487236..487241,487245..487247,
487251..487253)
/locus_tag="Avi_5489"
/note="iron-sulfur cluster [ion binding]; other site"
/db_xref="CDD:58538"
misc_feature order(487152..4871 