LOCUS NC_011989 3726375 bp DNA circular BCT 31-DEC-2012
DEFINITION Agrobacterium vitis S4 chromosome 1, complete sequence.
ACCESSION NC_011989
VERSION NC_011989.1 GI:222147015
DBLINK Project: 58249
BioProject: PRJNA58249
KEYWORDS .
SOURCE Agrobacterium vitis S4
ORGANISM Agrobacterium vitis S4
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.
REFERENCE 1 (bases 1 to 3726375)
AUTHORS Slater,S.C., Goldman,B.S., Goodner,B., Setubal,J.C., Farrand,S.K.,
Nester,E.W., Burr,T.J., Banta,L., Dickerman,A.W., Paulsen,I.,
Otten,L., Suen,G., Welch,R., Almeida,N.F., Arnold,F., Burton,O.T.,
Du,Z., Ewing,A., Godsy,E., Heisel,S., Houmiel,K.L., Jhaveri,J.,
Lu,J., Miller,N.M., Norton,S., Chen,Q., Phoolcharoen,W., Ohlin,V.,
Ondrusek,D., Pride,N., Stricklin,S.L., Sun,J., Wheeler,C.,
Wilson,L., Zhu,H. and Wood,D.W.
TITLE Genome sequences of three agrobacterium biovars help elucidate the
evolution of multichromosome genomes in bacteria
JOURNAL J. Bacteriol. 191 (8), 2501-2511 (2009)
PUBMED 19251847
REFERENCE 2 (bases 1 to 3726375)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (28-JAN-2009) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3726375)
AUTHORS Setubal,J., Wood,D., Slater,S., Nester,E., Farrand,S., Goldman,B.,
Burr,T., Goodner,B., Otten,L., Dickerman,A., Almeida,N., Sun,J.,
Jhaveri,J., Banta,L. and Houmiel,K.
CONSRTM Agrobacterium Consortium
TITLE Direct Submission
JOURNAL Submitted (14-MAR-2007) Virginia Bioinformatics Institute, Virginia
Tech, Washington Street, Box 0477, Blacksburg, VA 24061, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000633.
Strain/DNA available from Tom Burr, Cornell University,
tjb1@cornell.edu. A. vitis S4 was isolated by Dr. Erno Szegedi in
1981 from aerial gall that developed on a two-year-old woody
grapevine cane.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3726375
/organism="Agrobacterium vitis S4"
/mol_type="genomic DNA"
/strain="S4; ATCC BAA-846"
/isolate="Kecskemet-Hungary"
/host="Vitis vinifera cv. 'Izsaki Sarfeher'"
/culture_collection="ATCC:BAA-846"
/db_xref="taxon:311402"
/chromosome="1"
/country="Hungary: Orgovany"
gene 203..1024
/locus_tag="Avi_0001"
/db_xref="GeneID:7387188"
CDS 203..1024
/locus_tag="Avi_0001"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547973.1"
/db_xref="GI:222147016"
/db_xref="GeneID:7387188"
/translation="MENRKNFFHLHLISDSTGETLISAGRAAAVQFPHSNPIEHVYPL
VRNRRQADAVLQSIDKEPGIVLYTIVDPELADFIDRRCIEIGVPSVNVLEPVIGTFQA
YLGPLARRRVGAQHVMNADYFARIEALNYTMDHDDGQMAEDYDQADVVLVGISRTSKT
PTSIYLANRGIKTANIPIVPDSPLPESLFAAKGPLIVGLIATSDRISQVRGHRELGTV
SGFDPSDYTDRASIAEELKYARSLCARHNWPVIDVTRRSIEETAAAIIALRAKPR"
misc_feature 215..1021
/locus_tag="Avi_0001"
/note="PEP synthetase regulatory protein; Provisional;
Region: PRK05339"
/db_xref="CDD:180026"
gene 1056..1655
/gene="maf"
/locus_tag="Avi_0002"
/db_xref="GeneID:7389006"
CDS 1056..1655
/gene="maf"
/locus_tag="Avi_0002"
/codon_start=1
/transl_table=11
/product="septum formation inhibitor protein"
/protein_id="YP_002547974.1"
/db_xref="GI:222147017"
/db_xref="GeneID:7389006"
/translation="MTIPVILASTSPFRRQLLEQAGLRFTAMAPDIDEREIEGRAEHQ
HVSPQELAQVLSCEKALAVSRQAPVGLVIGGDQVLALGERIYHKPKDLSSARDQLLSL
RGETHVLYSALALTKQGEVIWRHVSQARMTMRMFSETFLDDYLDRAGGAILKSVGGYQ
IEGLGVQLFSDIVGDYFTIVGVPLLPLMEKLRELDIVHA"
misc_feature 1065..1646
/gene="maf"
/locus_tag="Avi_0002"
/note="Maf-like protein; Region: Maf; pfam02545"
/db_xref="CDD:202278"
misc_feature 1068..1628
/gene="maf"
/locus_tag="Avi_0002"
/note="Nucleotide binding protein Maf. Maf has been
implicated in inhibition of septum formation in
eukaryotes, bacteria and archaea, but homologs in
B.subtilis and S.cerevisiae are nonessential for cell
division. Maf has been predicted to be a nucleotide-
or...; Region: Maf; cd00555"
/db_xref="CDD:29954"
misc_feature order(1080..1082,1095..1097,1155..1157,1230..1232,
1281..1283,1317..1319)
/gene="maf"
/locus_tag="Avi_0002"
/note="active site"
/db_xref="CDD:29954"
misc_feature order(1212..1214,1416..1433)
/gene="maf"
/locus_tag="Avi_0002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29954"
gene 1648..2508
/gene="aroE"
/locus_tag="Avi_0004"
/db_xref="GeneID:7389007"
CDS 1648..2508
/gene="aroE"
/locus_tag="Avi_0004"
/note="AroE; catalyzes the conversion of shikimate to
3-dehydroshikimate"
/codon_start=1
/transl_table=11
/product="shikimate 5-dehydrogenase"
/protein_id="YP_002547975.1"
/db_xref="GI:222147018"
/db_xref="GeneID:7389007"
/translation="MHDSRETFLTGAFVAGYPIKHSRSPIIHSYWLQQHGLIGGYDKL
EIDPADIADFFARMKSGKTRYRGGNITIPHKEAAFQIADVPDMVATQLGAANTLWLEN
GLIHATNTDVYGFLANLDQGHAGWDKARKAVVLGAGGASRAIIQGLLDRGLQHVHVVN
RTLARAQDLADHFGAAVHAHGREQLQEVLQGADLLVNTTSLGMNGEDVPQIDWDRLSP
GALVTDIVYTPLETGLLRQARAAGFATVDGLGMLLHQAVPGFEKWFGVRPEVTDDLRQ
LLIADLEKQR"
misc_feature 1681..2499
/gene="aroE"
/locus_tag="Avi_0004"
/note="shikimate 5-dehydrogenase; Reviewed; Region: aroE;
PRK00258"
/db_xref="CDD:178949"
misc_feature 1687..1941
/gene="aroE"
/locus_tag="Avi_0004"
/note="Shikimate dehydrogenase substrate binding domain;
Region: Shikimate_dh_N; pfam08501"
/db_xref="CDD:149523"
misc_feature 1975..2442
/gene="aroE"
/locus_tag="Avi_0004"
/note="NAD(P) binding domain of Shikimate dehydrogenase;
Region: NAD_bind_Shikimate_DH; cd01065"
/db_xref="CDD:133443"
misc_feature order(1978..1980,2326..2328,2401..2403,2410..2412)
/gene="aroE"
/locus_tag="Avi_0004"
/note="shikimate binding site; other site"
/db_xref="CDD:133443"
misc_feature order(2056..2058,2065..2067,2125..2130,2239..2247,
2320..2322,2389..2391,2398..2403)
/gene="aroE"
/locus_tag="Avi_0004"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133443"
gene 2505..3092
/gene="coaE"
/locus_tag="Avi_0005"
/db_xref="GeneID:7389008"
CDS 2505..3092
/gene="coaE"
/locus_tag="Avi_0005"
/codon_start=1
/transl_table=11
/product="dephospho-CoA kinase"
/protein_id="YP_002547976.1"
/db_xref="GI:222147019"
/db_xref="GeneID:7389008"
/translation="MIRIGLTGSIGMGKTTTADFFRQEGVPVYDADAAVHDLYRGDAV
ASIGAVFPEAVISGVVDREILSRTLAQNPGKLKQLEAIVHPLVRDKQQDFLEDQELAG
ADLVVFDIPLLFETGGEKRLDKVVVVSCDADTQRRRVLARPGWSEEKLALVLSRQMPD
AEKRARADFVIETGQGLQVAQTQVKAIVSTLRGQT"
misc_feature 2505..3086
/gene="coaE"
/locus_tag="Avi_0005"
/note="Dephospho-CoA kinase [Coenzyme metabolism]; Region:
CoaE; COG0237"
/db_xref="CDD:30586"
misc_feature 2511..3035
/gene="coaE"
/locus_tag="Avi_0005"
/note="Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis; Region: DPCK; cd02022"
/db_xref="CDD:30195"
misc_feature order(2523..2525,2598..2600,2754..2756,2835..2840,
2973..2975)
/gene="coaE"
/locus_tag="Avi_0005"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:30195"
misc_feature order(2526..2534,2541..2546,2916..2918,3021..3023)
/gene="coaE"
/locus_tag="Avi_0005"
/note="ATP-binding [chemical binding]; other site"
/db_xref="CDD:30195"
gene 3187..3897
/gene="dnaQ"
/locus_tag="Avi_0006"
/db_xref="GeneID:7389009"
CDS 3187..3897
/gene="dnaQ"
/locus_tag="Avi_0006"
/note="3'-5' exonuclease of DNA polymerase III"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit epsilon"
/protein_id="YP_002547977.1"
/db_xref="GI:222147020"
/db_xref="GeneID:7389009"
/translation="MREIVFDTETTGLESKLDRVIEIGGIELFNHFPTGRSFHVYINP
ADRAIHPDALAVHGITPEFLKDKPVFADIVEDLVAFFDGAKWVAHNATFDMGFINAEF
ERLGRPLVGPEHVIDTLSLARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLA
EVYIEMLGGRQATFGLEQSGNSDKRSRTQDSNVTVEIAARPKTLASRLTEAEQERHAA
LVKRLGQKAIWAHYNQGE"
misc_feature 3190..3867
/gene="dnaQ"
/locus_tag="Avi_0006"
/note="DNA polymerase III, epsilon subunit,
Proteobacterial; Region: dnaQ_proteo; TIGR01406"
/db_xref="CDD:130473"
misc_feature 3193..3684
/gene="dnaQ"
/locus_tag="Avi_0006"
/note="DEDDh 3'-5' exonuclease domain of the epsilon
subunit of Escherichia coli DNA polymerase III and similar
proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131"
/db_xref="CDD:99835"
misc_feature order(3205..3216,3220..3225,3340..3345,3352..3357,
3451..3456,3460..3468,3580..3585,3625..3627,3634..3636,
3649..3651)
/gene="dnaQ"
/locus_tag="Avi_0006"
/note="active site"
/db_xref="CDD:99835"
misc_feature order(3205..3216,3220..3225,3340..3345,3352..3357,
3451..3456,3460..3465,3580..3585,3625..3627,3634..3636,
3649..3651)
/gene="dnaQ"
/locus_tag="Avi_0006"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:99835"
misc_feature order(3205..3207,3211..3213,3466..3468,3634..3636,
3649..3651)
/gene="dnaQ"
/locus_tag="Avi_0006"
/note="catalytic site [active]"
/db_xref="CDD:99835"
gene complement(3977..4438)
/gene="secB"
/locus_tag="Avi_0007"
/db_xref="GeneID:7389010"
CDS complement(3977..4438)
/gene="secB"
/locus_tag="Avi_0007"
/note="molecular chaperone that is required for the normal
export of envelope proteins out of the cell cytoplasm; in
Escherichia coli this proteins forms a homotetramer in the
cytoplasm and delivers proteins to be exported to SecA"
/codon_start=1
/transl_table=11
/product="preprotein translocase subunit SecB"
/protein_id="YP_002547978.1"
/db_xref="GI:222147021"
/db_xref="GeneID:7389010"
/translation="MANENSNGAESPSLNILAQYIKDLSFENPGAPRSLQARDKAPSI
NINVNVNANPLSDNDFDVVLSLTAEARDDDKVVFAAELVYGGVFRITGFPQEHMLPVL
FIECPRLLFPFARQIIADATRNGGFPPLMIDPIDFAQMFAQRFAEEQGRVN"
misc_feature complement(3992..4438)
/gene="secB"
/locus_tag="Avi_0007"
/note="preprotein translocase subunit SecB; Validated;
Region: PRK05751"
/db_xref="CDD:180234"
misc_feature complement(order(4196..4198,4202..4204,4358..4360,
4370..4372))
/gene="secB"
/locus_tag="Avi_0007"
/note="SecA binding site; other site"
/db_xref="CDD:29643"
misc_feature complement(order(4187..4189,4193..4195,4199..4201,
4205..4207))
/gene="secB"
/locus_tag="Avi_0007"
/note="Preprotein binding site; other site"
/db_xref="CDD:29643"
gene complement(4528..5061)
/gene="fxsA"
/locus_tag="Avi_0008"
/db_xref="GeneID:7389011"
CDS complement(4528..5061)
/gene="fxsA"
/locus_tag="Avi_0008"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547979.1"
/db_xref="GI:222147022"
/db_xref="GeneID:7389011"
/translation="MRLTALFLLLLPLMEIAGFVLVGQWLGVLPTLALVIGSSLLGLL
VLRSQGISLAQRLRRPRSGDPERAAKGVLSGTAQMFGGLLLILPGFITDILGLLLLVP
MVRSALWKIISPRLVFVQRGGRGAGWQQRPGGPTSSGPGPAKAEDIIDLDEKDYQRHN
PNGSSPWTRLPGDESKG"
misc_feature complement(4711..5019)
/gene="fxsA"
/locus_tag="Avi_0008"
/note="FxsA cytoplasmic membrane protein; Region: FxsA;
pfam04186"
/db_xref="CDD:202921"
gene 5183..5881
/locus_tag="Avi_0009"
/db_xref="GeneID:7389012"
CDS 5183..5881
/locus_tag="Avi_0009"
/codon_start=1
/transl_table=11
/product="Membrane associated transporter protein"
/protein_id="YP_002547980.1"
/db_xref="GI:222147023"
/db_xref="GeneID:7389012"
/translation="MGSNDFVTLFFLVAAVLIFWQLRSVLGRRTGNEKPPKDPFAGRP
DAASPAAEDARVVTLPRRDEADGEERQTAIDAYAPAGTPLNQQLRQVVEVDPSFVPKE
FLNGARMAYEMIVTAFAAGDRKSLKDLLSREVYDGFDAAITEREQRGEVMKSTFVGID
KAEITSAEVRDQEVQITVRLVSQLISATYDSQGAVIEGDAESVGDVNDIWTFARDTRS
RDPNWKLIATESDQ"
misc_feature 5183..5878
/locus_tag="Avi_0009"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4395"
/db_xref="CDD:34102"
gene 5878..7023
/gene="mltA"
/locus_tag="Avi_0010"
/db_xref="GeneID:7389013"
CDS 5878..7023
/gene="mltA"
/locus_tag="Avi_0010"
/codon_start=1
/transl_table=11
/product="membrane-bound lytic murein transglycosylase"
/protein_id="YP_002547981.1"
/db_xref="GI:222147024"
/db_xref="GeneID:7389013"
/translation="MSGEATKFRLEPVGFDQLPGWDADDPSALLPAMADCLDYLTTVK
PYRPGQLGLTAQDLVPLLEKAAALPRADGDALRHLLEVECQVFRIARTDGKAGFVTAF
YEPDIEVSDHPDDLYRFPFYRRPDDLIDLDDQNRPENIDPSYVFGRKSEGGATYYPDR
QAIDQGFLEGRGLEIAWAKSKVDVFFVHVQGAARLRYADGRVGRITYAAKAGHPFSGI
GGLLLKRGEIPPEAMSMQAIRAWLASHPDQVDEVLWHNRSYIFFREAELGDLSRGPIA
AAKVPLVAGRSLAVDRTIHTFGFPFFIHSQSLTSQDPTGVNSGKAFARLMLALDTGSA
IVGPARGDIFTGSGDEAGNLAGAVRNDADFYILIPKQAAKRVESRFG"
misc_feature 5878..7005
/gene="mltA"
/locus_tag="Avi_0010"
/note="Membrane-bound lytic murein transglycosylase [Cell
envelope biogenesis, outer membrane]; Region: MltA;
COG2821"
/db_xref="CDD:32649"
misc_feature 6196..6666
/gene="mltA"
/locus_tag="Avi_0010"
/note="MltA specific insert domain; Region: MltA;
smart00925"
/db_xref="CDD:197993"
misc_feature 6733..6978
/gene="mltA"
/locus_tag="Avi_0010"
/note="3D domain; Region: 3D; pfam06725"
/db_xref="CDD:203506"
gene 7062..7601
/locus_tag="Avi_0011"
/db_xref="GeneID:7389014"
CDS 7062..7601
/locus_tag="Avi_0011"
/codon_start=1
/transl_table=11
/product="DNA repair protein"
/protein_id="YP_002547982.1"
/db_xref="GI:222147025"
/db_xref="GeneID:7389014"
/translation="MWGKVARTTRPMAGRLEELTAFEDALTELEASKVLEPGLAAMRA
SLESSAAKPEPKKPSGLHHPLERPVKRKLSRGKLKLEARIDLHGLFQSEAHAILLEFL
VRAHERGLRHVLIITGKGSSMGSEGALKRAVPLWFSKPEFRYLISSHEPAAHHHGGEG
ALYVRLARQGGERFGGDGQ"
misc_feature 7062..7568
/locus_tag="Avi_0011"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2840"
/db_xref="CDD:32668"
misc_feature 7311..7514
/locus_tag="Avi_0011"
/note="Smr domain; Region: Smr; pfam01713"
/db_xref="CDD:201932"
gene 7598..7993
/locus_tag="Avi_0012"
/db_xref="GeneID:7389015"
CDS 7598..7993
/locus_tag="Avi_0012"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_002547983.1"
/db_xref="GI:222147026"
/db_xref="GeneID:7389015"
/translation="MTPFGDAVRGLRERKGVSQKDMAKAIGVTPAYLSALEHGRRGKP
SFDLLQRIAGYFNIIWDEADDLFAIAGLSHPRVTLDTAGLPAAHTAFANRLAGMIRTL
SPDVIEDLNALLSRSERDRQNPGNPVEAC"
misc_feature 7607..7960
/locus_tag="Avi_0012"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:31586"
misc_feature 7610..7783
/locus_tag="Avi_0012"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature order(7622..7624,7634..7636,7709..7711)
/locus_tag="Avi_0012"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(7631..7633,7706..7708)
/locus_tag="Avi_0012"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(7652..7657,7688..7690,7697..7699,7709..7714)
/locus_tag="Avi_0012"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene 8119..10554
/gene="gyrB"
/locus_tag="Avi_0013"
/db_xref="GeneID:7389016"
CDS 8119..10554
/gene="gyrB"
/locus_tag="Avi_0013"
/note="negatively supercoils closed circular
double-stranded DNA"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_002547984.1"
/db_xref="GI:222147027"
/db_xref="GeneID:7389016"
/translation="MTETTDEANAASTAYGADSIKVLKGLDAVRKRPGMYIGDTDDGS
GLHHMVYEVVDNAIDEALAGHADIVTVTLNADGSVTVTDNGRGIPTDIHTGEGISAAE
VIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSVKLSMKIRRHGKVHEMSFTHGVA
DAPLAVTGDYQGRSGTEITFLPSTETFTQVEFDYGTLEHRLRELAFLNSGVRILLTDK
RKSDIRQEEMLYDGGLEAFVRYLDRSKKPLVSNPVAIRGEKDGITVEVAMWWNDSYHE
NVLCFTNNIPQRDGGTHMAGFRGALTRQITSYADSSGITKKEKVTLQGEDCREGLSAV
LSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALSTWFEEHPTEAKILVGKVVEAAV
AREAARKARELTRRKGALDIASLPGKLADCSERDPAKSELFLVEGDSAGGSAKQGRSR
ERQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTSIGKDEFNADKLRYHKIIIM
TDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYKVTRGKSIQYLKDEKALEE
YLIGMGLDDASLKLGSGEVRAGQDLREVVQDALRLRSLIDGLHSRYNRNVVEQAAVVG
ALNHELTANRERAEQTAAEVAKRLDLIAEETERGWEGFVTEEGGLRFERMVRGVKEVA
ALDVALIGSADARHIDQLATRLNDIYGQPPVLTRKDGQQTISGPRNLLDAVFSFGRKG
LSMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDATDADSLFSRLMGDEVEPRRDF
IQENALNVANLDI"
misc_feature 8143..10551
/gene="gyrB"
/locus_tag="Avi_0013"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:184903"
misc_feature 8254..>8397
/gene="gyrB"
/locus_tag="Avi_0013"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature 8284..8286
/gene="gyrB"
/locus_tag="Avi_0013"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(8371..8373,8377..8379)
/gene="gyrB"
/locus_tag="Avi_0013"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 8812..9273
/gene="gyrB"
/locus_tag="Avi_0013"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 8965..8967
/gene="gyrB"
/locus_tag="Avi_0013"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(9139..9141,9148..9153,9157..9159)
/gene="gyrB"
/locus_tag="Avi_0013"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(9157..9159,9163..9165)
/gene="gyrB"
/locus_tag="Avi_0013"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 9406..9750
/gene="gyrB"
/locus_tag="Avi_0013"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(9424..9429,9436..9438,9646..9648,9652..9654,
9658..9660)
/gene="gyrB"
/locus_tag="Avi_0013"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(9424..9426,9646..9648)
/gene="gyrB"
/locus_tag="Avi_0013"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 10324..10518
/gene="gyrB"
/locus_tag="Avi_0013"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene complement(10715..11311)
/locus_tag="Avi_0014"
/db_xref="GeneID:7389017"
CDS complement(10715..11311)
/locus_tag="Avi_0014"
/codon_start=1
/transl_table=11
/product="nitroreductase family protein"
/protein_id="YP_002547985.1"
/db_xref="GI:222147028"
/db_xref="GeneID:7389017"
/translation="MTSSNHRNATHDIHPIFLDRWSPRAFTGETMSKTELLTILEAAH
WAPSAFNYQPWRFVYALKGDEHFDALLGALIEFNQGWAKNASALVFVISDTLSRSPDG
SAPKPSRSHSFDAGAAWGYLALQAIHSGFHAHGMTGVDFDKAANVLGVPADFHIEAAV
AIGKLGDKSILPEGLQAKEVPNDRKPLESVVFEGKFKA"
misc_feature complement(10736..11287)
/locus_tag="Avi_0014"
/note="Nitroreductase-like family 2. A subfamily of the
nitroreductase family containing uncharacterized proteins
that are similar to nitroreductase. Nitroreductase
catalyzes the reduction of nitroaromatic compounds such as
nitrotoluenes, nitrofurans and...; Region:
Nitroreductase_2; cd02138"
/db_xref="CDD:48385"
misc_feature complement(order(10898..10903,11162..11164,11240..11242,
11246..11248,11252..11254))
/locus_tag="Avi_0014"
/note="putative FMN binding site [chemical binding]; other
site"
/db_xref="CDD:48385"
gene 11732..13027
/gene="depA"
/locus_tag="Avi_0016"
/db_xref="GeneID:7389018"
CDS 11732..13027
/gene="depA"
/locus_tag="Avi_0016"
/codon_start=1
/transl_table=11
/product="intracellular PHB depolymerase"
/protein_id="YP_002547986.1"
/db_xref="GI:222147029"
/db_xref="GeneID:7389018"
/translation="MFYQLYEMNHAAMAPLRATADAMRLAFRNPLNPLTHTVIGRTMA
AGFEVIERNTRRYGKPEFGLPTTVIDGSPVKITEEVTWSKPFCNLIHFNRSLTQPRSN
DPKILIVAPMSGHYATLLRGTVEALLPSADVYITDWIDARMVPMTDGTFDFDDYVDYV
IEILHHLGPNTNLVAVCQPSVPVLAAVARMEAENDEFVPSSMTLMGGPIDTRINPTAV
NELAKNKPIEWFEENVIMNVPWPQPGFLRPVYPGFLQLSGFMSMNLDRHMIAQKDFYV
HLVKNNGDSAEKHREFYDEYLSVMDLTAEFYLQTVEAVFMRHSLPKGELMHRGKPVDC
GAIRNVALLTVEGENDDISGVGQTKAAQTLCTNLADDKRMHYMQPDVGHYGVFTGSRF
RREIAPRIVAFAKQHSNQPTSAVKRATMVKRVIKGGKST"
misc_feature 11732..12961
/gene="depA"
/locus_tag="Avi_0016"
/note="Poly-beta-hydroxyalkanoate depolymerase [Lipid
metabolism]; Region: DepA; COG4553"
/db_xref="CDD:34198"
misc_feature 12347..12955
/gene="depA"
/locus_tag="Avi_0016"
/note="PHB de-polymerase C-terminus; Region: PHB_depo_C;
pfam06850"
/db_xref="CDD:148454"
gene 13165..13611
/locus_tag="Avi_0017"
/db_xref="GeneID:7389019"
CDS 13165..13611
/locus_tag="Avi_0017"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547987.1"
/db_xref="GI:222147030"
/db_xref="GeneID:7389019"
/translation="MNQSALLRPGWRPATIAMMVLGFVIFWPLGLAMLAYILWGDRFR
TSKRNANEAMDAMFSKCCGSRRSRNRNRFSASSGNLAFDEWRVTELERIEQERRKLEE
MREEFEAYVLELQRAKDQDEFNRFMNQRNASRRDDRGSDVQTFTPD"
misc_feature 13177..13560
/locus_tag="Avi_0017"
/note="Protein of unknown function (DUF2852); Region:
DUF2852; pfam11014"
/db_xref="CDD:151461"
gene 13722..14486
/locus_tag="Avi_0018"
/db_xref="GeneID:7389020"
CDS 13722..14486
/locus_tag="Avi_0018"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547988.1"
/db_xref="GI:222147031"
/db_xref="GeneID:7389020"
/translation="MFPLFLRSPTKVAKKPKVPESRELLVAGRPVPLAIRENLRATRI
TLRIEPGGRGLKMTIPKGVRQGDVNDFIERHRGWLESKLARFSDDTKVRAGGVISLRG
VAHRIEHTGQLRGVTQVQMENGEPVIRISGLPEHAGRRLSAFLKKEARLDLERLVAIH
TGRLGKPSKSLALKDTRSRWGSCSWDGNLSFSWRIVMAPPSVIDYLAAHEVAHLKEMN
HGPQFWALCKRLCPGMDEAKSWLKRHGSELHALDFD"
misc_feature 13848..14453
/locus_tag="Avi_0018"
/note="Protein of unknown function DUF45; Region: DUF45;
pfam01863"
/db_xref="CDD:145171"
gene 14528..15202
/gene="trpF"
/locus_tag="Avi_0019"
/db_xref="GeneID:7389021"
CDS 14528..15202
/gene="trpF"
/locus_tag="Avi_0019"
/note="catalyzes the formation of
1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate
from N-(5-phospho-beta-D-ribosyl)-anthranilate in
tryptophan biosynthesis"
/codon_start=1
/transl_table=11
/product="N-(5'-phosphoribosyl)anthranilate isomerase"
/protein_id="YP_002547989.1"
/db_xref="GI:222147032"
/db_xref="GeneID:7389021"
/translation="MKPDVKICGLKTEEAVEKAVSLGATHVGFIFFEKSPRHIEPDIA
GRIAEKARGRAKIVAVTVDADTDDLDDIVYLLKPDILQLHGHESPQQVLTIKALYGLP
VMKVFSIREPADLLQIDAYIGIADRFLLDAKAPEGSDLPGGNGVTFDWRLLRDLDAEV
DYMLSGGLNKDNVGQALAETAARGLDVSSGVESAPGVKDLERMDQFFAAVRLATATAP
VSGSVQ"
misc_feature 14540..15157
/gene="trpF"
/locus_tag="Avi_0019"
/note="Phosphoribosylanthranilate isomerase (PRAI)
catalyzes the fourth step of the tryptophan biosynthesis,
the conversion of N-(5'- phosphoribosyl)-anthranilate
(PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose
5-phosphate (CdRP). Most PRAIs are monomeric; Region:
PRAI; cd00405"
/db_xref="CDD:73365"
misc_feature order(14543..14545,14549..14551,14615..14617,14771..14773,
14777..14779,14918..14920,15083..15085,15089..15094)
/gene="trpF"
/locus_tag="Avi_0019"
/note="active site"
/db_xref="CDD:73365"
gene 15199..16419
/gene="trpB"
/locus_tag="Avi_0020"
/db_xref="GeneID:7389022"
CDS 15199..16419
/gene="trpB"
/locus_tag="Avi_0020"
/note="catalyzes the formation of L-tryptophan from
L-serine and 1-(indol-3-yl)glycerol 3-phosphate"
/codon_start=1
/transl_table=11
/product="tryptophan synthase subunit beta"
/protein_id="YP_002547990.1"
/db_xref="GI:222147033"
/db_xref="GeneID:7389022"
/translation="MNQNPIPNSFRSGPDEDGRFGIFGGRFVAETLMPLILDLQAEWE
NAKTDPSFKAELDHLNTHYTGRPSPLYFAERLTAELGGAKIYFKRDELNHTGSHKINN
CLGQILLAKRMGKTRIIAETGAGQHGVASATVAARFGLPCIVYMGATDVERQAPNVFR
MKLLGAEVRPVSSGHGTLKDAMNEALRDWVTNVDETYYMIGTAAGPHPYPEMVREFQS
VIGKESREQMMAAEGRLPDMLVAAVGGGSNAIGLFHPFLDDESVRMIGVEAGGKGLDG
NEHCASLTAGSPGVLHGNRTYLLQDSDGQIKDGHSISAGLDYPGIGPEHSWLKDIGRV
EYVPIMDTEALEAFQLLTRTEGIIPALEPSHALAEVMKRAPKMGKDEIILMNLCGRGD
KDIFTVGKILGMGL"
misc_feature 15250..16404
/gene="trpB"
/locus_tag="Avi_0020"
/note="tryptophan synthase, beta subunit; Region: trpB;
TIGR00263"
/db_xref="CDD:161793"
misc_feature 15310..16392
/gene="trpB"
/locus_tag="Avi_0020"
/note="Tryptophan synthase-beta: Trptophan synthase is a
bifunctional enzyme that catalyses the last two steps in
the biosynthesis of L-tryptophan via its alpha and beta
reactions. In the alpha reaction, indole 3-glycerol
phosphate is cleaved reversibly to...; Region:
Trp-synth_B; cd06446"
/db_xref="CDD:107207"
misc_feature order(15490..15495,15574..15576,15802..15804,15928..15942,
16282..16284,16360..16362)
/gene="trpB"
/locus_tag="Avi_0020"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107207"
misc_feature 15493..15495
/gene="trpB"
/locus_tag="Avi_0020"
/note="catalytic residue [active]"
/db_xref="CDD:107207"
gene 16421..17260
/gene="trpA"
/locus_tag="Avi_0021"
/db_xref="GeneID:7389023"
CDS 16421..17260
/gene="trpA"
/locus_tag="Avi_0021"
/note="catalyzes the formation of indole and
glyceraldehyde 3-phosphate from indoleglycerol phosphate
in tryptophan biosynthesis"
/codon_start=1
/transl_table=11
/product="tryptophan synthase subunit alpha"
/protein_id="YP_002547991.1"
/db_xref="GI:222147034"
/db_xref="GeneID:7389023"
/translation="MTQRMDKRFADLKEEGRPALVTYFMGGDPDFETSLAIMKALPQA
GADVIELGMPFSDPMADGPAIQMAGQRALKAGQTLVKTLDMAREFRKGDQATPIVMMG
YYNPIYVYGVEKFLDDALDAGIDGLIVVDLPPEMDDELCLPARKRDINFIRLATPTTD
EKRLPMVLQNTSGFVYYVSMNGITGSALPDPSKVAGAVGRIKAHTDLPICVGFGVKTA
EHARLIGASADGVVVGTAIVNQVALSLTKDDKATADTVQSVVTLVRGLASGVQTARLA
AAQ"
misc_feature 16439..17233
/gene="trpA"
/locus_tag="Avi_0021"
/note="tryptophan synthase subunit alpha; Provisional;
Region: trpA; PRK13111"
/db_xref="CDD:183865"
misc_feature 16475..17146
/gene="trpA"
/locus_tag="Avi_0021"
/note="Ttryptophan synthase (TRPS) alpha subunit (TSA).
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2
beta subunits) that catalyzes the last two steps of
L-tryptophan biosynthesis. Alpha and beta subunit catalyze
two distinct reactions which are both...; Region:
Tryptophan_synthase_alpha; cd04724"
/db_xref="CDD:73386"
misc_feature order(16568..16570,16601..16603,16613..16615,16946..16948,
16970..16975,17057..17062,17120..17125)
/gene="trpA"
/locus_tag="Avi_0021"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73386"
misc_feature order(16568..16570,16601..16603,16727..16729,16970..16972)
/gene="trpA"
/locus_tag="Avi_0021"
/note="active site"
/db_xref="CDD:73386"
misc_feature order(16568..16570,16601..16603,16727..16729)
/gene="trpA"
/locus_tag="Avi_0021"
/note="catalytic residues [active]"
/db_xref="CDD:73386"
misc_feature order(16583..16594,16598..16600,16607..16609,16616..16621,
16733..16735,16742..16744,16808..16813,16817..16819,
16826..16828,16886..16888,16892..16900,16907..16909)
/gene="trpA"
/locus_tag="Avi_0021"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73386"
gene 17395..18315
/locus_tag="Avi_0022"
/db_xref="GeneID:7389024"
CDS 17395..18315
/locus_tag="Avi_0022"
/note="catalyzes the carboxylation of acetyl-CoA to
malonyl-CoA; forms a tetramer of AccA2D2 subunits"
/codon_start=1
/transl_table=11
/product="acetyl-CoA carboxylase subunit beta"
/protein_id="YP_002547992.1"
/db_xref="GI:222147035"
/db_xref="GeneID:7389024"
/translation="MNWITNYVRPRINSMLGRRDVPDNLWIKCPETGEMVFHKDLEEN
KWVVPASGYHMKMPAKARLADLFDGGKYEAFAQPKVAQDPLKFRDSKKYSDRLKDSRT
KTEQEDTIVAGLGTVEGLKLVAVVHEFNFMGGSLGIAAGEAIVKAFERAIAEKCPLVM
FPASGGARMQEGILSLMQLPRTTVAVDLLKEAGLPYIVVLTNPTTGGVTASYAMLGDL
HIAEPGAEICFAGKRVIEQTIREKLPEGFQTSEYLLEHGMVDMVVKRHDIPATLARTL
KILTKQPATVVGANDDKTLSVIEASRAVSA"
misc_feature 17395..18246
/locus_tag="Avi_0022"
/note="acetyl-CoA carboxylase subunit beta; Validated;
Region: PRK05654"
/db_xref="CDD:180184"
misc_feature 17704..>18105
/locus_tag="Avi_0022"
/note="Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit; Region: ACCA; cl15772"
/db_xref="CDD:210172"
gene 18355..19767
/gene="folC"
/locus_tag="Avi_0024"
/db_xref="GeneID:7389025"
CDS 18355..19767
/gene="folC"
/locus_tag="Avi_0024"
/codon_start=1
/transl_table=11
/product="folylpolyglutamate synthase"
/protein_id="YP_002547993.1"
/db_xref="GI:222147036"
/db_xref="GeneID:7389025"
/translation="MPKVGSSFTAPGPQYELQAWNRPMIENTLSQAEQVINELMQLHP
KGFDMTLERMRRLLEVLGNPQDKLPPVIHVAGTNGKGSVSAFSRALLEAGGLAVHVHT
SPHLVNWHERYRIGVKGGKGQIVDDGSLADALRRVAVANAGQHITVFEILTAAAFLLF
SEIPADAVIMEVGMGGRLDCTNVVDRPAVSVIMPISFDHQAYLGDRVELIAAEKAGIM
KRRRPVVIGHQEFAAAREALVDIAERLGCPLSVFGQDYLAFEEHGRLVYQDESGLMDL
PLPKLPGRHQFANAAAAIRAVRSAGFTVTEAMAETAMYSVEWPGRLQKLTEGALLAHA
PKGAEIWVDGGHNPGAGEVIAEAMAGFEERQSRPLYLITGMLNTKDPLGYFKAFEGLA
IQAFTVPIRGTDAALDPVALASSAYDAGIPAEPVSSVAEALEAICSRVNAEEIAPRIL
IGGSLYVVGNVLSDNGTPPR"
misc_feature 18433..19764
/gene="folC"
/locus_tag="Avi_0024"
/note="Folylpolyglutamate synthase [Coenzyme metabolism];
Region: FolC; COG0285"
/db_xref="CDD:30633"
misc_feature 18580..19212
/gene="folC"
/locus_tag="Avi_0024"
/note="Mur ligase middle domain; Region: Mur_ligase_M;
pfam08245"
/db_xref="CDD:203888"
gene 20263..20913
/locus_tag="Avi_0025"
/db_xref="GeneID:7389026"
CDS 20263..20913
/locus_tag="Avi_0025"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547994.1"
/db_xref="GI:222147037"
/db_xref="GeneID:7389026"
/translation="METSLYLPVKSFLEKAGYTVKGEIGGCDLVGLSADDPSVVVICE
LKLSFNLELILQAVDRAAISDEVWIAAKISAKGRGREADKRYRDLCRRLGIGMLGVSA
SGEVSIIVGSVSPMPRTNPKRRSRLMREHQTRRGDPALGGSTRMPVMTAYRQNALACA
AILVAEPMRVGDVRKAVPDAGKILLSNVYGWFERVERGVYGLTDGGRDALRRWPQG"
misc_feature 20266..20907
/locus_tag="Avi_0025"
/note="Uncharacterized conserved protein (DUF2161);
Region: DUF2161; cl02298"
/db_xref="CDD:207568"
gene 21148..22152
/locus_tag="Avi_0027"
/db_xref="GeneID:7389027"
CDS 21148..22152
/locus_tag="Avi_0027"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547995.1"
/db_xref="GI:222147038"
/db_xref="GeneID:7389027"
/translation="MKRYTGSVDNISDGRGGILGKQADDLLLQRIANWKTAYTDGATG
VLAAIEAMLWDHAAFRTAIRIVNLASQRQQAEVPEGDGPLLNQMLFDLLAKGYWSSLL
LGVRKLLDPHPLVGPRGVYSLRAILNDVKACRPKLTRRVYVEHLRMCRYDLNLLRQEN
WEAIRAATGNAIWEGDTALHLSESSHRDFDYLSGVKEADRSEIDLIDPAVLELIETRL
AELDRISEHASSHIAHAGNAESRLGKNLEEFNIRDARKVLKALKEIGDLIGLWFTNGE
ISNLAVYQGNQFEGLDMVLVPSADMPVLDANWDLIDQDIESWRLEPDDLLSGNGSVSG
"
gene complement(22379..22699)
/gene="trxA"
/locus_tag="Avi_0028"
/db_xref="GeneID:7389028"
CDS complement(22379..22699)
/gene="trxA"
/locus_tag="Avi_0028"
/codon_start=1
/transl_table=11
/product="thioredoxin"
/protein_id="YP_002547996.1"
/db_xref="GI:222147039"
/db_xref="GeneID:7389028"
/translation="MATVKVDASNFEAEVLQSVEPVVVDFWAEWCGPCKMIAPSLDEI
STEMAGKVKIAKLNIDENPELAAKFGVRSIPTLAMFKGGEVADIKVGAAPKTALSSWI
AGAA"
misc_feature complement(22391..22675)
/gene="trxA"
/locus_tag="Avi_0028"
/note="TRX family; composed of two groups: Group I, which
includes proteins that exclusively encode a TRX domain;
and Group II, which are composed of fusion proteins of TRX
and additional domains. Group I TRX is a small ancient
protein that alter the redox...; Region: TRX_family;
cd02947"
/db_xref="CDD:48496"
misc_feature complement(order(22598..22600,22607..22609))
/gene="trxA"
/locus_tag="Avi_0028"
/note="catalytic residues [active]"
/db_xref="CDD:48496"
gene complement(22899..23855)
/locus_tag="Avi_0030"
/db_xref="GeneID:7389029"
CDS complement(22899..23855)
/locus_tag="Avi_0030"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002547997.1"
/db_xref="GI:222147040"
/db_xref="GeneID:7389029"
/translation="MEMVRRLALVFILSVSCAFSAAFVPEIQAAEVRMVPAGNRNAEQ
PPIPGASKQRTKETKTTFDLKYEKIRDLLIKDRQLIGKIKKTAAAYNIDPIHIVGALV
GEHTYNVDAYDTLQSYYVKAASYAGHTFRFAYDGEDVDDFVARPEFAACAELKDSAKL
WTCRENVWEDKFQGKRVGNKSFPNNRFSAVFFQPFYAGQTFGLGQINPLTALMLTDMV
HQTSGYPKLDEKDAAGLYKAIMDPDTSLAYIAAIIRKSIDDYKTYANVDISNNPGLTA
TLYNVGNSEARARALGRRGGLPEENYYGWLVNDRLKELEGLL"
misc_feature complement(22902..23792)
/locus_tag="Avi_0030"
/note="Protein of unknown function (DUF1402); Region:
DUF1402; pfam07182"
/db_xref="CDD:148658"
gene complement(24029..25336)
/gene="hslU"
/locus_tag="Avi_0031"
/db_xref="GeneID:7389030"
CDS complement(24029..25336)
/gene="hslU"
/locus_tag="Avi_0031"
/note="heat shock protein involved in degradation of
misfolded proteins"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease ATP-binding subunit HslU"
/protein_id="YP_002547998.1"
/db_xref="GI:222147041"
/db_xref="GeneID:7389030"
/translation="MTTFSPREIVSELDRYIIGQNDAKRAVAIALRNRWRRQQLDESL
RDEVMPKNILMIGPTGVGKTEISRRLAKLAGAPFIKVEATKFTEVGYVGRDVEQIIRD
LVEIGIGLIKEKKRLEVEAKAHAGAEERVLDALVGATASPATRDSFRKKLRAGELDDK
EIDIEVAETSSGMPGFEIPGMPGANVGILNLSDMFGKAMGGRTKKVRTTVKTSYADLI
RDESDKLIDNEVIQREAVKSVENDGIVFLDEIDKIANREGAMGAGVSREGVQRDLLPL
VEGTTVATKYGPVKTDHILFIASGAFHVSKPSDLLPELQGRLPIRVELKALTKEDFRR
ILTETEASLIRQYIALMATEQLDLEFTEDAIDALADVAVNLNSSIENIGARRLQTVME
RVLYDISFNAPDRGGAKVMIDSAYVREHVGEIAADADLSRYIL"
misc_feature complement(24032..25336)
/gene="hslU"
/locus_tag="Avi_0031"
/note="ATP-dependent protease ATP-binding subunit HslU;
Provisional; Region: hslU; PRK05201"
/db_xref="CDD:179962"
misc_feature complement(<25028..25285)
/gene="hslU"
/locus_tag="Avi_0031"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(24770..25180)
/gene="hslU"
/locus_tag="Avi_0031"
/note="Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and...; Region: PEPCK_HprK;
cl00270"
/db_xref="CDD:211435"
misc_feature complement(25145..25168)
/gene="hslU"
/locus_tag="Avi_0031"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(25142..25165)
/gene="hslU"
/locus_tag="Avi_0031"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(order(24779..24781,24797..24799,25022..25024,
25091..25096,25142..25162))
/gene="hslU"
/locus_tag="Avi_0031"
/note="active site"
/db_xref="CDD:73237"
misc_feature complement(order(24779..24781,24797..24799,25142..25153,
25157..25162))
/gene="hslU"
/locus_tag="Avi_0031"
/note="nucleotide-binding site [chemical binding]; other
site"
/db_xref="CDD:73237"
misc_feature complement(order(25022..25024,25091..25096,25145..25147))
/gene="hslU"
/locus_tag="Avi_0031"
/note="metal-binding site [ion binding]"
/db_xref="CDD:73237"
misc_feature complement(24374..>24670)
/gene="hslU"
/locus_tag="Avi_0031"
/note="AAA domain (Cdc48 subfamily); Region: AAA_2;
pfam07724"
/db_xref="CDD:203740"
misc_feature complement(24098..24358)
/gene="hslU"
/locus_tag="Avi_0031"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; smart01086"
/db_xref="CDD:198154"
gene complement(25374..25934)
/gene="hslV"
/locus_tag="Avi_0032"
/db_xref="GeneID:7389031"
CDS complement(25374..25934)
/gene="hslV"
/locus_tag="Avi_0032"
/note="heat shock protein involved in degradation of
misfolded proteins"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease peptidase subunit"
/protein_id="YP_002547999.1"
/db_xref="GI:222147042"
/db_xref="GeneID:7389031"
/translation="MSEHNPYGTMHGTTIITVRKGGMVVMAGDGQVSLGQTVMKGNAR
KVRRIGKGEVIAGFAGATADAFTLLERLEKKLEQYPGQLMRAAVELAKDWRTDKYLRN
LEAMMLVADKTVTLAITGNGDVLEPEHGTIAIGSGGNYALAAALALMDTEKSAEEVAR
KAMKIAADICVYTNENVLVETLESAN"
misc_feature complement(25389..25898)
/gene="hslV"
/locus_tag="Avi_0032"
/note="Protease HslV and the ATPase/chaperone HslU are
part of an ATP-dependent proteolytic system that is the
prokaryotic homolog of the proteasome. HslV is a dimer of
hexamers (a dodecamer) that forms a central proteolytic
chamber with active sites on the...; Region:
protease_HslV; cd01913"
/db_xref="CDD:48442"
misc_feature complement(order(25527..25529,25800..25802,25842..25844,
25848..25850,25896..25898))
/gene="hslV"
/locus_tag="Avi_0032"
/note="active site"
/db_xref="CDD:48442"
misc_feature complement(order(25422..25424,25428..25433,25440..25442,
25452..25454,25506..25508,25515..25520,25557..25559,
25569..25571,25650..25652,25821..25829))
/gene="hslV"
/locus_tag="Avi_0032"
/note="HslU subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48442"
gene 26129..26725
/gene="hisB"
/locus_tag="Avi_0033"
/db_xref="GeneID:7389032"
CDS 26129..26725
/gene="hisB"
/locus_tag="Avi_0033"
/note="catalyzes the dehydration of
D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to
3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine
biosynthesis"
/codon_start=1
/transl_table=11
/product="imidazoleglycerol-phosphate dehydratase"
/protein_id="YP_002548000.1"
/db_xref="GI:222147043"
/db_xref="GeneID:7389032"
/translation="MAESRSASISRKTNETSVSVSVTIDGTGTSKISTGVGFFDHMLD
QLSRHSLIDMDIDVTGDLHIDDHHTVEDTGIAIGQAISKALGDRRGIVRYASIDLAMD
ETMTKAAIDVSGRPFLVWNVAFSAPKIGTFDTELVREFFQALAQNAGITLHILNHYGA
NNHHIAETCFKAVARALRSATEIDPRQAGRIPSTKGML"
misc_feature 26138..26722
/gene="hisB"
/locus_tag="Avi_0033"
/note="imidazoleglycerol-phosphate dehydratase; Validated;
Region: hisB; PRK00951"
/db_xref="CDD:179179"
misc_feature 26147..26722
/gene="hisB"
/locus_tag="Avi_0033"
/note="Imidazoleglycerol-phosphate dehydratase; Region:
IGPD; cd07914"
/db_xref="CDD:153419"
misc_feature order(26171..26173,26249..26251,26261..26263,26270..26275,
26327..26332,26339..26341,26405..26407,26429..26434,
26471..26473,26543..26545,26615..26620,26627..26629)
/gene="hisB"
/locus_tag="Avi_0033"
/note="putative active site pocket [active]"
/db_xref="CDD:153419"
misc_feature order(26237..26242,26249..26251,26315..26323,26327..26332,
26504..26518,26525..26527,26531..26533,26540..26545,
26606..26620)
/gene="hisB"
/locus_tag="Avi_0033"
/note="4-fold oligomerization interface [polypeptide
binding]; other site"
/db_xref="CDD:153419"
misc_feature order(26249..26251,26327..26332,26339..26341,26543..26545,
26615..26620,26627..26629)
/gene="hisB"
/locus_tag="Avi_0033"
/note="metal binding residues [ion binding]; metal-binding
site"
/db_xref="CDD:153419"
misc_feature order(26402..26404,26408..26410,26414..26422,26426..26434,
26438..26443,26453..26461,26471..26473,26477..26479,
26579..26581,26585..26587,26591..26593,26597..26599,
26651..26653,26660..26662,26678..26680)
/gene="hisB"
/locus_tag="Avi_0033"
/note="3-fold/trimer interface [polypeptide binding];
other site"
/db_xref="CDD:153419"
gene 26753..27403
/gene="hisH"
/locus_tag="Avi_0035"
/db_xref="GeneID:7389033"
CDS 26753..27403
/gene="hisH"
/locus_tag="Avi_0035"
/note="with HisF IGPS catalyzes the conversion of
phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide
ribonucleotide phosphate and glutamine to
imidazole-glycerol phosphate,
5-aminoimidazol-4-carboxamide ribonucleotide, and
glutamate in histidine biosynthesis; the HisH subunit
provides the glutamine amidotransferase activity that
produces the ammonia necessary to HisF for the synthesis
of imidazole-glycerol phosphate and
5-aminoimidazol-4-carboxamide ribonucleotide"
/codon_start=1
/transl_table=11
/product="imidazole glycerol phosphate synthase subunit
HisH"
/protein_id="YP_002548001.1"
/db_xref="GI:222147044"
/db_xref="GeneID:7389033"
/translation="MRVVIIDYGSGNLRSATKAFERASRESGLDAEIELTDKADRVAT
ADRIVLPGVGAYADCKRGLDAVPGMHEALVEAVEVKARPFLGICVGMQLMSSRGLEKT
VTEGLDWIKGDVVEMTPSDPGLKIPQIGWNTLTLARPHPLFDGIATGNDGLHAYFVHS
YHLAASNADEVIATTDYGGPMTAFVGRDNMAGAQFHPEKSQSLGLQLISNFLNWAP"
misc_feature 26753..27400
/gene="hisH"
/locus_tag="Avi_0035"
/note="imidazole glycerol phosphate synthase subunit HisH;
Provisional; Region: hisH; PRK13146"
/db_xref="CDD:183871"
misc_feature 26759..27388
/gene="hisH"
/locus_tag="Avi_0035"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in imidazole glycerol phosphate synthase (IGPS);
Region: GATase1_IGP_Synthase; cd01748"
/db_xref="CDD:153219"
misc_feature order(26891..26914,27008..27022,27338..27340,27344..27346)
/gene="hisH"
/locus_tag="Avi_0035"
/note="putative active site [active]"
/db_xref="CDD:153219"
misc_feature 26891..26914
/gene="hisH"
/locus_tag="Avi_0035"
/note="oxyanion strand; other site"
/db_xref="CDD:153219"
misc_feature order(27014..27016,27338..27340,27344..27346)
/gene="hisH"
/locus_tag="Avi_0035"
/note="catalytic triad [active]"
/db_xref="CDD:153219"
gene 27428..28162
/gene="hisA"
/locus_tag="Avi_0036"
/db_xref="GeneID:7389034"
CDS 27428..28162
/gene="hisA"
/locus_tag="Avi_0036"
/note="catalyzes the formation of
5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l-
(5-phosphoribosyl)imidazole-4-carboxamide from
1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide"
/codon_start=1
/transl_table=11
/product="1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase"
/protein_id="YP_002548002.1"
/db_xref="GI:222147045"
/db_xref="GeneID:7389034"
/translation="MILFPAIDLKDGQCVRLKLGDMEQATVYNPDPGAQAKAFEDQGF
EWLHVVDLNGAFAGESVNGAAVDAILKATKNPVQLGGGIRSLAHIETWLQHGLSRVIL
GTVAVRDPALVIEACKLFPGKIAVGIDAKGGKVAVEGWAEASELGVVELAKKFEGAGV
AAIIYTDIDRDGILTGINWESTLELADAVSIPVIASGGLASIEDIRRMLEPDARKLEG
AISGRALYDGRIDPAEALALIQAAKG"
misc_feature 27428..28153
/gene="hisA"
/locus_tag="Avi_0036"
/note="Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase [Amino acid
transport and metabolism]; Region: HisA; COG0106"
/db_xref="CDD:30455"
misc_feature 27431..28138
/gene="hisA"
/locus_tag="Avi_0036"
/note="HisA. Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase catalyzes
the fourth step in histidine biosynthesis, an
isomerisation of the aminoaldose moiety of ProFAR to the
aminoketose of PRFAR (N-(5'-phospho-D-1...; Region: HisA;
cd04732"
/db_xref="CDD:73394"
misc_feature order(27449..27451,27569..27571,27812..27814)
/gene="hisA"
/locus_tag="Avi_0036"
/note="catalytic residues [active]"
/db_xref="CDD:73394"
gene 28176..28970
/gene="hisF"
/locus_tag="Avi_0037"
/db_xref="GeneID:7389035"
CDS 28176..28970
/gene="hisF"
/locus_tag="Avi_0037"
/note="catalyzes the conversion of
5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-
1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine
to imidazole-glycerol phosphate,
5-aminoimidazol-4-carboxamideribonucleotide and glutamate;
the HisF subunit acts as a cyclase"
/codon_start=1
/transl_table=11
/product="imidazole glycerol phosphate synthase subunit
HisF"
/protein_id="YP_002548003.1"
/db_xref="GI:222147046"
/db_xref="GeneID:7389035"
/translation="MTLKARIIPCLDVKDGRVVKGVNFVDLIDAGDPVEAAKAYDAAG
ADELCFLDITASSDNRETIFDVVARTADHCFMPVTVGGGVRAVGDIRKLLLAGADKVS
INSAAVSNPDFVAEAADKFGNQCIVVSIDAKRRRSQASGGDNLSAWEIYTHGGRNATG
IDAVEFAVKMVERGAGELLVTSMDRDGTKSGYDLELTRAIADAVRVPVIASGGVGTLD
DLVAGVRQGHATAVLAASIFHFGTYSIAEAKAHMANAGIPMRLDKA"
misc_feature 28191..28940
/gene="hisF"
/locus_tag="Avi_0037"
/note="The cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). Imidazole glycerol phosphate synthase
(IGPS) catalyzes the fifth step of histidine biosynthesis,
the formation of the imidazole ring. IGPS converts
N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731"
/db_xref="CDD:73393"
misc_feature 28191..28907
/gene="hisF"
/locus_tag="Avi_0037"
/note="Histidine biosynthesis protein; Region:
His_biosynth; pfam00977"
/db_xref="CDD:201535"
misc_feature order(28233..28235,28326..28328,28422..28424,28485..28490,
28560..28562,28566..28568,28635..28637,28716..28718,
28731..28736,28806..28814,28878..28883)
/gene="hisF"
/locus_tag="Avi_0037"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73393"
misc_feature order(28296..28298,28311..28313,28377..28379,28389..28391,
28398..28400,28404..28406,28461..28463,28470..28475,
28545..28547,28704..28706,28788..28790,28863..28865)
/gene="hisF"
/locus_tag="Avi_0037"
/note="glutamase interaction surface [polypeptide
binding]; other site"
/db_xref="CDD:73393"
gene 28983..29297
/gene="hisE"
/locus_tag="Avi_0038"
/db_xref="GeneID:7389036"
CDS 28983..29297
/gene="hisE"
/locus_tag="Avi_0038"
/note="catalyzes the formation of 1-(5-phosphoribosyl)-AMP
from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis"
/codon_start=1
/transl_table=11
/product="phosphoribosyl-ATP pyrophosphatase"
/protein_id="YP_002548004.1"
/db_xref="GI:222147047"
/db_xref="GeneID:7389036"
/translation="MSTFTLSDLEAIVAIRAKASPDESWTAKLVTAGQDKAAKKLGEE
AIEAVMAAVKNDRANLIYESADLLYHLLVVLKIADIPIETVMEELQRRTAQSGLSEKA
SR"
misc_feature 28998..29249
/gene="hisE"
/locus_tag="Avi_0038"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) MazG-like domain found in Escherichia coli
phosphoribosyl-ATP pyrophosphohydrolase (HisIE or
PRATP-PH) and its homologs; Region: NTP-PPase_HisIE_like;
cd11534"
/db_xref="CDD:212141"
misc_feature order(29112..29114,29121..29123,29169..29171,29178..29180)
/gene="hisE"
/locus_tag="Avi_0038"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212141"
gene 29303..30295
/gene="panK"
/locus_tag="Avi_0039"
/db_xref="GeneID:7389037"
CDS 29303..30295
/gene="panK"
/locus_tag="Avi_0039"
/note="catalyzes the formation of
(R)-4'-phosphopantothenate in coenzyme A biosynthesis"
/codon_start=1
/transl_table=11
/product="pantothenate kinase"
/protein_id="YP_002548005.1"
/db_xref="GI:222147048"
/db_xref="GeneID:7389037"
/translation="MTTAIRQAEGEEALDHFQVGSYSPYLFFSSEEWARFRADTPLTL
TLDEVHRLRSIDDPIDLAEVRRIYLALSRLLSSHVESSQLLFEQRNRFLSTNVTKTPF
IIGIAGSVAVGKSTTARVLKELLARWPSSPKVDLVTTDGFLYSNATLVRDNKLNRKGF
PESYDTAALLRFLSAIKAGQQNVKAPRYSHLTYDVLPDQHTIIDRPDILIFEGINVLQ
SRDLPRDGKIVPMVSDFFDFSIYIDAEESLIHNWYVKRFMKLRQTAFRDPNSYFHRYA
TISEDEASTIAENLWSHINLINLRDNIQPTRPRADLILRKGENHLVEQVALRKL"
misc_feature 29363..30292
/gene="panK"
/locus_tag="Avi_0039"
/note="pantothenate kinase; Provisional; Region: PRK05439"
/db_xref="CDD:180082"
misc_feature 29609..30283
/gene="panK"
/locus_tag="Avi_0039"
/note="Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps in
coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point
in...; Region: PanK; cd02025"
/db_xref="CDD:30198"
misc_feature order(29633..29635,29642..29653,30056..30058,30068..30070,
30248..30250,30260..30262)
/gene="panK"
/locus_tag="Avi_0039"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30198"
misc_feature order(29642..29647,29657..29659,29870..29872,30068..30070,
30080..30082,30260..30262)
/gene="panK"
/locus_tag="Avi_0039"
/note="CoA-binding site [chemical binding]; other site"
/db_xref="CDD:30198"
misc_feature order(29645..29647,29936..29938)
/gene="panK"
/locus_tag="Avi_0039"
/note="Mg2+-binding site [ion binding]; other site"
/db_xref="CDD:30198"
gene 30362..30940
/locus_tag="Avi_0040"
/db_xref="GeneID:7389038"
CDS 30362..30940
/locus_tag="Avi_0040"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548006.1"
/db_xref="GI:222147049"
/db_xref="GeneID:7389038"
/translation="MTFIDPNKAAPVSGRRVFLGAAATAIAATAAGQSGQAADTKTGG
GPLSDIPIALPRTEFVYEAIFTLQDTIEMGASPQGDRRIINITGGEFAGPRIKGKVMP
GGADRQVLRKDGVRLLNALYELQADDGAVITVNNRVLIDRQPDGTQYAFSHIDITAPV
GPHDWLNRRVFVGTLNSLRPKPMVLIRVFSLV"
misc_feature 30524..30928
/locus_tag="Avi_0040"
/note="Protein of unknown function (DUF3237); Region:
DUF3237; pfam11578"
/db_xref="CDD:204677"
gene complement(30977..31411)
/locus_tag="Avi_0041"
/db_xref="GeneID:7389039"
CDS complement(30977..31411)
/locus_tag="Avi_0041"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase domain protein"
/protein_id="YP_002548007.1"
/db_xref="GI:222147050"
/db_xref="GeneID:7389039"
/translation="MASDPLYINDRITIAGWELTEQFVLAGGPGGQNVNKVSTAVQLF
FPLTSSPSLPDRIKTNAIKLAGRRLSKEGVLLIEASRFRSQERNREDARERLKELLLE
AAKPPPPPRRKTKPTKGSIERRLKAKVGRGEIKKMREKPDQD"
misc_feature complement(30980..31399)
/locus_tag="Avi_0041"
/note="hypothetical protein; Provisional; Region:
PRK09256"
/db_xref="CDD:181730"
misc_feature complement(30992..>31390)
/locus_tag="Avi_0041"
/note="Protein chain release factor B [Translation,
ribosomal structure and biogenesis]; Region: PrfB;
COG1186"
/db_xref="CDD:31379"
gene complement(31588..33198)
/gene="pckA"
/locus_tag="Avi_0042"
/db_xref="GeneID:7389040"
CDS complement(31588..33198)
/gene="pckA"
/locus_tag="Avi_0042"
/note="PEP carboxykinase; PEP carboxylase; PEPCK;
catalyzes the phosphorylation and decarboxylation of
oxaloacetate to form phosphoenolpyruvate using ATP"
/codon_start=1
/transl_table=11
/product="phosphoenolpyruvate carboxykinase"
/protein_id="YP_002548008.1"
/db_xref="GI:222147051"
/db_xref="GeneID:7389040"
/translation="MEELGVNNSRLGIETIGLGKAANVHYNLLPAALYEHAIRNGEAV
LTADGALLAETGQHTGRSPKDKFILRDANTDSQIWWDNNKPMSKEHFDILHQDMLAHV
AGKTLFVQDLIGGADAANALPTRVVTELAWHSLFIRNLLIRPERAALADFEAKFTIID
LPSFKADPARHGCRTETVIACDFTNNIVLIAGTYYAGEMKKSVFTALNYMLPAKQVMP
MHCSANVGPAGDSAVFFGLSGTGKTTLSADPARTLIGDDEHGWGEDGIFNFEGGCYAK
TIRLSAEAEPEIYATTKRFGTVLENVVLDENRVPDFNDGSKTENTRCAYPLNFIPNAS
PTGRAGHPKTIIMLTADAFGVMPPIAKLTPEQAMYHFLSGYTAKVAGTERGVTEPEAT
FSTCFGAPFMPRHPAEYGNLLKELIARHEVDCWLVNTGWTGGAYGVGNRMPIKATRAL
LTAALSGELKKVEFRTDANFGFAVPVSVEGVDTSILDPRSTWANGTDYDAQAKKLVGM
FIANFEKFEAHVDSNVLDAAPVLAVAAQ"
misc_feature complement(31744..33141)
/gene="pckA"
/locus_tag="Avi_0042"
/note="Phosphoenolpyruvate carboxykinase; Region:
PEPCK_ATP; pfam01293"
/db_xref="CDD:201716"
misc_feature complement(31636..33132)
/gene="pckA"
/locus_tag="Avi_0042"
/note="Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and...; Region: PEPCK_ATP;
cd00484"
/db_xref="CDD:29830"
misc_feature complement(order(31858..31860,31867..31869,31876..31878,
32233..32235,32344..32346,32371..32373,32377..32379,
32428..32433,32467..32487,32539..32541,32596..32601,
32608..32610,32614..32616,33016..33018))
/gene="pckA"
/locus_tag="Avi_0042"
/note="active site"
/db_xref="CDD:29830"
misc_feature complement(order(32233..32235,32377..32379,32596..32601,
32608..32610,32614..32616,33016..33018))
/gene="pckA"
/locus_tag="Avi_0042"
/note="substrate-binding site [chemical binding]; other
site"
/db_xref="CDD:29830"
misc_feature complement(order(32377..32379,32428..32433,32470..32472,
32539..32541,32596..32598))
/gene="pckA"
/locus_tag="Avi_0042"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29830"
misc_feature complement(order(31858..31860,31876..31878,32344..32346,
32467..32487))
/gene="pckA"
/locus_tag="Avi_0042"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29830"
gene 33554..34276
/gene="chvI"
/locus_tag="Avi_0044"
/db_xref="GeneID:7389041"
CDS 33554..34276
/gene="chvI"
/locus_tag="Avi_0044"
/codon_start=1
/transl_table=11
/product="two component response regulator"
/protein_id="YP_002548009.1"
/db_xref="GI:222147052"
/db_xref="GeneID:7389041"
/translation="MQTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLAR
PPQLAIFDIKMPRMDGMELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKP
FSQRLLVERVKAILRRAANRETGNAPGNVKTAAEQQARNLERGQLVMDQERHTCTWKG
DPVTLTVTEFLILHSLAQRPGVVKSRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKM
VDNDFDMIETLYGVGYRFRETA"
misc_feature 33563..34273
/gene="chvI"
/locus_tag="Avi_0044"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 33569..33901
/gene="chvI"
/locus_tag="Avi_0044"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(33575..33580,33707..33709,33731..33733,33788..33790,
33845..33847,33854..33859)
/gene="chvI"
/locus_tag="Avi_0044"
/note="active site"
/db_xref="CDD:29071"
misc_feature 33707..33709
/gene="chvI"
/locus_tag="Avi_0044"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(33716..33721,33725..33733)
/gene="chvI"
/locus_tag="Avi_0044"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 33854..33862
/gene="chvI"
/locus_tag="Avi_0044"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 33977..34261
/gene="chvI"
/locus_tag="Avi_0044"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(34049..34051,34106..34111,34163..34165,34172..34174,
34196..34201,34235..34237,34250..34252)
/gene="chvI"
/locus_tag="Avi_0044"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 34514..36286
/gene="chvG"
/locus_tag="Avi_0045"
/db_xref="GeneID:7389042"
CDS 34514..36286
/gene="chvG"
/locus_tag="Avi_0045"
/codon_start=1
/transl_table=11
/product="two-component sensor histidine kinase"
/protein_id="YP_002548010.1"
/db_xref="GI:222147053"
/db_xref="GeneID:7389042"
/translation="MDDKDGDPGESRRLPLRLSFSHPFTLIRRIFGNAVFSSLTRRIV
FFNLAALIVLVAGIMYLNQFREGLIDARVESLLTQGEIIAGAISASASVDTNSITIDP
QKLLELQAGQSITPVPNDEDLEFPIKPERVAPVLRRLISPTRTRARLFDADANLLLDS
RHLYSRGQVLRYDLPPVEGDTGSWTEWLAKQFNRMLQPSNVPLYKEAPGGDGSIYPEV
MNALTGVRGAVVRVTEQGELIVSVAVPVQRFRAVLGVLLLSTQAGDIDKIVHAERLAI
LRVFGVATLVNIVLSLLLSSTIANPLRRLSAAAIRVRRGAKEREEIPDFSARQDEIGN
LSVALREMTTALYDRIDAIESFAADVSHELKNPLTSLRSAVETLPLAKTDVSKQRLLD
VIQHDVRRLDRLISDISDASRLDAELARTDAAPVDMEVVLGNLVEISRQIRSSKKPVD
IEYVVEHKQGQKVRYIINGHDLRIGQIVTNLIENARSFVPEKEGRIVVRLSRTRSRCV
VQVEDNGPGILVENIDRIFERFYTDRPDGESFGQNSGLGLSISRQIAEAHGGSLRAEN
ILEPETARILGARFILTLPAEPSP"
misc_feature 34592..34819
/gene="chvG"
/locus_tag="Avi_0045"
/note="Sensor N-terminal transmembrane domain; Region:
Sensor_TM1; pfam13755"
/db_xref="CDD:205929"
misc_feature 34892..35221
/gene="chvG"
/locus_tag="Avi_0045"
/note="Stimulus-sensing domain; Region: Stimulus_sens_1;
pfam13756"
/db_xref="CDD:205930"
misc_feature 35237..36283
/gene="chvG"
/locus_tag="Avi_0045"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 35339..35551
/gene="chvG"
/locus_tag="Avi_0045"
/note="HAMP domain; Region: HAMP; pfam00672"
/db_xref="CDD:189662"
misc_feature order(35405..35410,35417..35422,35426..35431,35438..35443,
35447..35449,35504..35509,35513..35518,35525..35530,
35534..35539,35546..35551)
/gene="chvG"
/locus_tag="Avi_0045"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 35561..35752
/gene="chvG"
/locus_tag="Avi_0045"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(35579..35581,35591..35593,35603..35605,35612..35614,
35624..35626,35633..35635,35681..35683,35693..35695,
35702..35704,35714..35716,35723..35725,35735..35737)
/gene="chvG"
/locus_tag="Avi_0045"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 35597..35599
/gene="chvG"
/locus_tag="Avi_0045"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 35933..36265
/gene="chvG"
/locus_tag="Avi_0045"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(35951..35953,35963..35965,35972..35974,36044..36046,
36050..36052,36056..36058,36062..36067,36146..36157,
36203..36205,36209..36211,36242..36247,36251..36253)
/gene="chvG"
/locus_tag="Avi_0045"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 35963..35965
/gene="chvG"
/locus_tag="Avi_0045"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(36056..36058,36062..36064,36146..36148,36152..36154)
/gene="chvG"
/locus_tag="Avi_0045"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 36283..36741
/locus_tag="Avi_0046"
/db_xref="GeneID:7389043"
CDS 36283..36741
/locus_tag="Avi_0046"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548011.1"
/db_xref="GI:222147054"
/db_xref="GeneID:7389043"
/translation="MNESRLNLHATGVVLGRRGYLIMGPSGSGKSQLAHLLLENARQN
GLFAALVADDRVWLEARGGRVIASRPQTIAGLMEIRFSGLVTVPSLDAAVIDAVVLSV
EPSSMTERLPQSAESRCFFPGQSLPVLRLCPAHHPSVAGLQRLLEAWASD"
misc_feature 36295..36708
/locus_tag="Avi_0046"
/note="HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates the
utilization of carbon sources by gram-positive bacteria.
It catalyzes both the ATP-dependent...; Region: HprK_C;
cd01918"
/db_xref="CDD:29833"
misc_feature order(36301..36303,36307..36309,36358..36363,36370..36372,
36385..36387,36397..36399,36442..36447,36451..36453,
36496..36498,36514..36516,36526..36534,36547..36549,
36610..36618,36670..36672,36703..36705)
/locus_tag="Avi_0046"
/note="Hpr binding site; other site"
/db_xref="CDD:29833"
misc_feature order(36307..36309,36361..36363,36367..36375,36439..36444,
36514..36516,36520..36522)
/locus_tag="Avi_0046"
/note="active site"
/db_xref="CDD:29833"
misc_feature order(36379..36381,36385..36387,36397..36402,36427..36429,
36496..36498,36508..36510,36526..36528,36532..36540,
36547..36552,36667..36669)
/locus_tag="Avi_0046"
/note="homohexamer subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:29833"
gene 37102..37503
/locus_tag="Avi_0047"
/db_xref="GeneID:7389044"
CDS 37102..37503
/locus_tag="Avi_0047"
/codon_start=1
/transl_table=11
/product="PTS system IIA component"
/protein_id="YP_002548012.1"
/db_xref="GI:222147055"
/db_xref="GeneID:7389044"
/translation="MIGLVLVTHGKLAEEFHYAVEHVVGPQKFIETICIGPEDDMDQR
RQDILDAVMRADDGHGVIILTDMFGGTPSNLAISVMNTGRIEVIAGVNLPMLIKLAGV
RGENDMEKALVDASEAGRKYINVASRVLSGK"
misc_feature 37105..37464
/locus_tag="Avi_0047"
/note="PTS_IIA, PTS system, mannose/sorbose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_man; cd00006"
/db_xref="CDD:28890"
misc_feature order(37126..37128,37168..37173,37204..37206,37312..37314,
37402..37404)
/locus_tag="Avi_0047"
/note="active pocket/dimerization site"
/db_xref="CDD:28890"
misc_feature order(37126..37128,37297..37299,37312..37314)
/locus_tag="Avi_0047"
/note="active site"
/db_xref="CDD:28890"
misc_feature 37126..37128
/locus_tag="Avi_0047"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:28890"
gene 37518..37793
/gene="ptsH"
/locus_tag="Avi_0048"
/db_xref="GeneID:7389045"
CDS 37518..37793
/gene="ptsH"
/locus_tag="Avi_0048"
/codon_start=1
/transl_table=11
/product="phosphocarrier protein HPr"
/protein_id="YP_002548013.1"
/db_xref="GI:222147056"
/db_xref="GeneID:7389045"
/translation="MTSFTRDLLIVNKRGLHARASAKFVQTVQGFNAEVTVSKDGTTV
GGTSIMGLMMLAASPGCTITVVTSGEEAEKAIDTLDALVRDKFGEEM"
misc_feature 37545..37766
/gene="ptsH"
/locus_tag="Avi_0048"
/note="Histidine-containing phosphocarrier protein
(HPr)-like proteins. HPr is a central component of the
bacterial phosphoenolpyruvate sugar phosphotransferase
system (PTS). The PTS catalyses the phosphorylation of
sugar substrates during their translocation...; Region:
PTS-HPr_like; cd00367"
/db_xref="CDD:29444"
misc_feature order(37563..37565,37569..37574,37578..37583,37593..37595,
37602..37604,37656..37667,37674..37679)
/gene="ptsH"
/locus_tag="Avi_0048"
/note="regulatory protein interface [polypeptide binding];
other site"
/db_xref="CDD:29444"
misc_feature 37566..37568
/gene="ptsH"
/locus_tag="Avi_0048"
/note="active site"
/db_xref="CDD:29444"
misc_feature 37659..37661
/gene="ptsH"
/locus_tag="Avi_0048"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:29444"
gene 37838..39367
/gene="ahcY"
/locus_tag="Avi_0049"
/db_xref="GeneID:7389046"
CDS 37838..39367
/gene="ahcY"
/locus_tag="Avi_0049"
/note="catalyzes the formation of L-homocysteine from
S-adenosyl-L-homocysteine"
/codon_start=1
/transl_table=11
/product="S-adenosyl-L-homocysteine hydrolase"
/protein_id="YP_002548014.1"
/db_xref="GI:222147057"
/db_xref="GeneID:7389046"
/translation="MPSSAFPDTRMTLACRRMAGGASALPSFRMGAGLAFQPGLENAM
STVQDYIVADIGLADYGRKELDIAETEMPGLMSCRSELGETKPLKGARISGSLHMTIQ
TAVLIETLTALGAEVRWASCNIFSTQDHAAAAIAASGVPVFAVKGESLTEYWDYTDRI
FQWTDGGQSNMILDDGGDATMYILLGARAEAGENVLVNPSSEEEEILFAQIKKRMAAT
PGFFTKQRDAIKGVTEETTTGVNRLYQLSQKGLLPFPAINVNDSVTKSKFDNKYGCKE
SLVDGIRRATDVMMAGKVAVVCGYGDVGKGCAASLIGAGARVKVTEVDPICALQAAMD
GFEVVRLEDVVKTADIFITTTGNKDVIRIEHMREMKDMAIVGNIGHFDNEIQVVALKN
LKWVNIKPQVDMIEFPAGNRMILLSEGRLLNLGNATGHPSFVMSASFTNQVLAQIELF
TKPDAYKNQVYVLPKHLDEKVARLHLEKLGVRLTELSDEQASYIGVTPSGPFKADHYR
Y"
misc_feature 37964..39346
/gene="ahcY"
/locus_tag="Avi_0049"
/note="S-adenosyl-L-homocysteine hydrolase; Provisional;
Region: PRK05476"
/db_xref="CDD:180110"
misc_feature 38000..39340
/gene="ahcY"
/locus_tag="Avi_0049"
/note="S-adenosyl-L-homocysteine hydrolase (AdoHycase)
catalyzes the hydrolysis of S-adenosyl-L-homocysteine
(AdoHyc) to form adenosine (Ado) and homocysteine (Hcy).
The equilibrium lies far on the side of AdoHyc synthesis,
but in nature the removal of Ado and...; Region:
AdoHcyase; cd00401"
/db_xref="CDD:29522"
misc_feature order(38024..38026,38045..38050,38558..38560,38567..38572,
38618..38620,38624..38626,38639..38641,38651..38653,
38660..38665,38684..38689,38696..38698,38702..38716,
38777..38782,38801..38827,38831..38842,38849..38854,
38903..38914,38945..38953,38984..38986,39026..39028,
39119..39121,39137..39139,39221..39223,39263..39265,
39272..39277,39281..39289,39293..39295,39302..39307,
39314..39319)
/gene="ahcY"
/locus_tag="Avi_0049"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:29522"
misc_feature order(38129..38131,38135..38137,38141..38143,38360..38362,
38540..38545,38630..38632,38642..38644,39125..39127)
/gene="ahcY"
/locus_tag="Avi_0049"
/note="active site"
/db_xref="CDD:29522"
misc_feature order(38543..38551,38645..38647,38732..38734,38738..38746,
38798..38806,38897..38902,38915..38917,38969..38977,
39098..39100,39104..39106,39125..39127)
/gene="ahcY"
/locus_tag="Avi_0049"
/note="NAD+ binding site [chemical binding]; other site"
/db_xref="CDD:29522"
gene 39579..42314
/locus_tag="Avi_0050"
/db_xref="GeneID:7389047"
CDS 39579..42314
/locus_tag="Avi_0050"
/codon_start=1
/transl_table=11
/product="two component sensor kinase"
/protein_id="YP_002548015.1"
/db_xref="GI:222147058"
/db_xref="GeneID:7389047"
/translation="MTSPSGDAFGMCTREMGMSCRNCGTVDGDRPEMTVQKKYPFLRG
RTGLRGRTGLRGSAGKTMRAESASFGDTGPRAGAASGIAGRGFLRLSRWWLHGSTVLA
GGLVCHSALAQTIAVPQLNAGGIGTFSSTEMIGLSLVIGAISATLLSTLWLVRQRNSI
EADSREIRSALSDANQRISRYQALIADKNRRIVIWDGGETKPEQLGQLPVETGAPQTE
GDFLAFGRWMKPGSAADLDNAIEKLRFNAQSFDLIVETYRDEVLEVQGRVSGGRAFAR
FVALNNLRAELAELKIEKTRLSTAIETFESLLESVEQPVWQRDSEGRLVWVNQAYSDA
VEALTPDQAIQEGREILNTITREKIRATLTPVSPYHDTVSTVVHGNRTFFSVVDTKTP
KGSCGMAIDVSREEALREELSRTLKSHAETLDHLATPVAIFDGERRLQFYNQAFQQLW
DLDLAFLESRPDHAELLDRLRSAGKLPEQLSWKAWKENTLSVYRSIDTQTVLWHLPNG
QTLRVIASAHPQGGATWVFENLTEQVDLETRYNTLVRVQGETIDHLSEGVAVFGPDGR
IRLSNPAFRALWGITETQAAPGTHIRAIEEACALSYEKPDGWRAFGKMITSFEDERPS
SQGTIELMSGLVLDYAVIPLPNAQTMLTFVNITDSVRAERALLEKNEALRKADELKND
FVQHISYELRSPLTNIIGFTDLLKSSAIGPLNERQGEYVDHISTSSAVLLTIVNDILD
LATVDAGIMRLTYSDIDLTDLLDDVSMQMTDRLQEGGVTLEILAPSHLGDIVADQQRL
KQILIKIITNAVNFSPEGAKVVLKCWREDADFVFSVSDTGCGIPEDMLPSVFKRFSSN
AKGGKRTGAGLGLSIVESFVHLHNGTVSINSVPNQGTTVLCRIPSGVLVHSVAAE"
misc_feature 40845..41180
/locus_tag="Avi_0050"
/note="PAS fold; Region: PAS_7; pfam12860"
/db_xref="CDD:205113"
misc_feature 41229..42275
/locus_tag="Avi_0050"
/note="phosphate regulon sensor kinase PhoR; Region:
phoR_proteo; TIGR02966"
/db_xref="CDD:163090"
misc_feature 41607..41804
/locus_tag="Avi_0050"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(41625..41627,41637..41639,41649..41651,41658..41660,
41670..41672,41679..41681,41736..41738,41748..41750,
41757..41759,41769..41771,41778..41780,41790..41792)
/locus_tag="Avi_0050"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 41643..41645
/locus_tag="Avi_0050"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 41997..42275
/locus_tag="Avi_0050"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(42000..42002,42009..42011,42078..42080,42084..42086,
42090..42092,42096..42101,42174..42185,42231..42233,
42237..42239,42252..42257,42261..42263)
/locus_tag="Avi_0050"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 42000..42002
/locus_tag="Avi_0050"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(42090..42092,42096..42098,42174..42176,42180..42182)
/locus_tag="Avi_0050"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 42311..43819
/locus_tag="Avi_0051"
/db_xref="GeneID:7389048"
CDS 42311..43819
/locus_tag="Avi_0051"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548016.1"
/db_xref="GI:222147059"
/db_xref="GeneID:7389048"
/translation="MTGLEISLHLSLADEAATIQLGEDLALALKPGDCLALHGDLGAG
KSTLARALLRALADDDDLEVPSPTFTLVQSYELRIPAAHFDLYRLGDASELDELGFDE
ALDTGICLVEWPERAEDRLPKTTIGLHYGFPPDGGRELTITGPEDRLGRIRRVLAIRA
FLDANGMAGARRRFLTGDADYRAYETARIDGQPQRIVMDSPKRPATPIIRLGKTYPEL
VHLAEDHRAFVAIDQLLKDAGLTVPEIYASDPDGILLIEDLGQDGILDAEGQPVAERY
MEAVAALAFLHGQNVSREMPVSPDHIHRIPDFDAAAMGFETELLLDWYMPFTLSRQPS
EEERQAYLALWSGMFRQIHDRNSLVLRDVHSPNLLWQERKQGIARVGLIDFQDAMIGP
AAYDVASLIQDARVTIEPELQKRLLDHYLTLRRAEAGFDESAFLQDFAIMAAQRNCKL
VGLWVRLMKRDGKPGYMQHMPRTLAYLAGALEHEALTPLKDWLSTHGLLQRG"
misc_feature 42338..42778
/locus_tag="Avi_0051"
/note="Predicted ATPase or kinase [General function
prediction only]; Region: COG0802"
/db_xref="CDD:31145"
misc_feature 42788..43810
/locus_tag="Avi_0051"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature 42956..43582
/locus_tag="Avi_0051"
/note="Phosphotransferase enzyme family; Region: APH;
pfam01636"
/db_xref="CDD:201896"
misc_feature order(43271..43282,43394..43396,43406..43411,43415..43417,
43457..43462,43517..43519)
/locus_tag="Avi_0051"
/note="active site"
/db_xref="CDD:88612"
misc_feature order(43271..43282,43394..43396,43406..43411,43415..43417,
43457..43462)
/locus_tag="Avi_0051"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:88612"
misc_feature order(43394..43396,43517..43519)
/locus_tag="Avi_0051"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:88612"
gene 43973..44686
/locus_tag="Avi_0053"
/db_xref="GeneID:7389049"
CDS 43973..44686
/locus_tag="Avi_0053"
/codon_start=1
/transl_table=11
/product="nucleotidyltransferase"
/protein_id="YP_002548017.1"
/db_xref="GI:222147060"
/db_xref="GeneID:7389049"
/translation="MVLAAGLGTRMRPITDTMPKPLVRVAGKTLVDYALDHLQQAGVE
TAVVNIHHFPEQMLAHLAGRDQPRIVISDERDGLMNNGGGLAKGIRHLAPGPLLVMNA
DLFWIGEPKDHPTNLQRLGEAFDPAQMDMLMLCVTLEQTTGHNGKNDFNLGADGRLTR
YQTGDPNPVVYAGALAMEHALLDDAPDDAFNLNIYFDRAIAEGRLFGLMLEGQWLTVG
TPEAIEEAETVLARQPQDI"
misc_feature 43973..>44668
/locus_tag="Avi_0053"
/note="Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure...;
Region: GCD1; COG1208"
/db_xref="CDD:31401"
misc_feature 43973..44650
/locus_tag="Avi_0053"
/note="NTP_transferase_like_1 is a member of the
nucleotidyl transferase family; Region:
NTP_transferase_like_1; cd06422"
/db_xref="CDD:133044"
misc_feature order(43979..43987,44117..44119,44273..44275,44279..44281)
/locus_tag="Avi_0053"
/note="Substrate binding site; other site"
/db_xref="CDD:133044"
misc_feature order(44279..44281,44618..44620,44624..44626)
/locus_tag="Avi_0053"
/note="metal-binding site"
/db_xref="CDD:133044"
gene 44683..47871
/gene="addB"
/locus_tag="Avi_0055"
/db_xref="GeneID:7389050"
CDS 44683..47871
/gene="addB"
/locus_tag="Avi_0055"
/codon_start=1
/transl_table=11
/product="double-strand break repair protein AddB"
/protein_id="YP_002548018.1"
/db_xref="GI:222147061"
/db_xref="GeneID:7389050"
/translation="MMSSLQARIFTIPPDRPFLRLIAETLCDGRLAPGFRYDPADPLS
LSKVTILVPTRRAVRVLRAQFVEVLGGQSAILPMIKPLGEAEDDASYFDADTPALLAL
NPPISNTVRLLELAQLILAWRNKLPDIVLSIHTETPLVAPASPADAVWLARALVELID
SVETEERDWADLDKLDARDFASWWQLTLAFLGIASAYWPARLEELNRSSPVLHRNALL
RTERDRVGHLSDPHPVIVAGSTGSIPAASELIAAVARLPQGVIVLPGLDKAMPDDQWH
SVGGEQPPGMPPEPTARTHPQYGLHRLLGRLGLTRDDVGVLEEAEPDLADRSEILSRA
LSPAKATDQWTAWRQAFGDNRFQAAFADVALIEAANEREEAIAIAIALRLALERPGAD
GGESRAALITPDRNLARRVASELARFGIEADDSAGTPFSATPQGTLLVLVLEAVLRPG
DPVAIVSLLKHPLARFGLPDDGHREATDALEAIALRGGTGAIDIAALAPLFDEQVVAQ
FDDRHPPAWRRSFTDQTRQQARILAEAIAEAVEPLAGHVVAKPDGHHFTTRLSLREWA
ERTGQVLEAVARTDEGDLGPLWANEAGAVLARLLSEIMETDGQLSADGPQWIEIVAAL
TASESVKPKSLRHPRVFIFGALESRLQSVDTMILGGLNEGSWPGTTTNNPFLSRSMKT
EMGLEPPERQIGQLAHDFEMANGTRHLIYCRALRQGSAPTVASRWLQRLLALGGKDFA
ETLKARGERYRHFADLLDKGADQAAAQRPQPKPPADLHPKTYSFSEVGRLRRDPYSIY
ARRILKLDPVEPFNSDPGASERGTLYHAIVEQFVARMPEKLGPDTEQLMSEIADTLFA
EENLPPHIHVVWRKRFSEVGLAFIEWQRQRDPAKLVTEARAGVELGEIDIRLTGIADR
IDIRAGHADIIDYKTGLNPSVSQARSLLDPQLALEAAALTMGAFKDVGRLNPDNLIYV
RLRPGGRFKADQVNNELTGKGDKAKSALDLAHESIAQLTRFVTLLQSGERGYVSRLMP
AMMNDFSGDYDHLARVAEWSTAEAAEESSSDD"
misc_feature 44704..47820
/gene="addB"
/locus_tag="Avi_0055"
/note="double-strand break repair protein AddB,
alphaproteobacterial type; Region: addB_alphas; TIGR02786"
/db_xref="CDD:163020"
misc_feature 47026..47820
/gene="addB"
/locus_tag="Avi_0055"
/note="RecB family exonuclease [DNA replication,
recombination, and repair]; Region: COG2887"
/db_xref="CDD:32713"
gene 47864..51412
/gene="uvrD"
/locus_tag="Avi_0056"
/db_xref="GeneID:7389051"
CDS 47864..51412
/gene="uvrD"
/locus_tag="Avi_0056"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase"
/protein_id="YP_002548019.1"
/db_xref="GI:222147062"
/db_xref="GeneID:7389051"
/translation="MTDPDMLRDGDDPIDWTTRQQSLASDPARSAWVSANAGSGKTHV
LTQRVIRLLLAGARPSSILCLTYTKAAASEMSNRVFDRLAEWATLSDEELSRRIETIE
RRPPDRMKIAEARRLFARALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVLDDR
AASVLLADARRSLLTATAAEDDANLAEAFAEVLSLGDEFGLENLLSDIVSNRHAVRGF
LAVARRKGGVESALRNALGLQPDETEISLAEAYWPLPTLAGPQLSTYIDLALTKGGSL
VQGVALTLERAVRQPDALIRAQLLEEAFYTGSDKPKADRSLIAAAMNKAAPHLSDAIF
AARDHVVACRERLRLFRLFKATRAALTLAERLDHDYEELKKRSSQLDFEDLIARTAEL
LTRSTVGPWVHYKLDQGIDHILVDEAQDTSPVQWSVIRSLREDFFSGQSARPVRRTFF
AVGDEKQSIYSFQGAKPERFSQEARETEQEVARGSESFSAVRLPLSFRSTNAVLSAVD
QVFSVTENARGLSAVAEPVVHMSSRIGHPGAVEVWEMIAPEGSESEEDWTAPFDATPE
NAPSAMLARRIAQRIEIMLARETIVEKGVERSIEAGDILILVRKRGAFVNALTRALKR
RSNIPVAGADRLRLTGHIAVQDLLALGRFVLFTADDLSLAALLKSPLFNLSEDDVFEV
AARRGEISVFAEIARLAEAGSEKWQAALARLHRYVALARDLLPHDFYGRVLGPLGGRR
DFLARLGSEVSDIIDEFLTFTLSHEQAGLPGLQSFITTLEQEAPEVKREQDKERSEVR
IMTVHASKGLEAPIVFLVDDGSKAFNHTHLPKFRMIETGAQPQECPVWVPVKAVDNPL
TAEDVAKRKQAIEEEYRRLLYVGMTRAADRLVVCGYRGKQVQTEIWHQMVWSALELDT
ERCRQQGFGGPEGDWTGLLWENAVVPGRFERQEKRQEKRELETLPEALLRPAPPPPRL
PRPLSPSGAGIEVNDEDGDMLLRSPLFSKGEDAGLALQKGRLVHRMLQMLPGLPADER
KPAARRYGERAARFWPAHERDRLVESVLAILDHPALSEVFSSHAQTEFSLMGTIRLGA
EQRAVSARVDRMAVTNEKVILLDYKTNRQPPRQESEVPLSHSAQLAIYRELLKPLYPG
RVIECLLVYTEGPHVVALTEAGLHGALQELQTIQNT"
misc_feature 47924..51355
/gene="uvrD"
/locus_tag="Avi_0056"
/note="double-strand break repair helicase AddA,
alphaproteobacterial type; Region: addA_alphas; TIGR02784"
/db_xref="CDD:211763"
misc_feature 47960..48106
/gene="uvrD"
/locus_tag="Avi_0056"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature <50222..50533
/gene="uvrD"
/locus_tag="Avi_0056"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
misc_feature 50885..51328
/gene="uvrD"
/locus_tag="Avi_0056"
/note="PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1;
pfam12705"
/db_xref="CDD:205031"
gene 51760..53940
/gene="glcB"
/locus_tag="Avi_0057"
/db_xref="GeneID:7389052"
CDS 51760..53940
/gene="glcB"
/locus_tag="Avi_0057"
/note="catalyzes the formation of malate from glyoxylate
and acetyl-CoA"
/codon_start=1
/transl_table=11
/product="malate synthase G"
/protein_id="YP_002548020.1"
/db_xref="GI:222147063"
/db_xref="GeneID:7389052"
/translation="MARVEQFGLAIEQDLYDFLVSEALPGTGVEPEAFFQHFSSLVHE
LAPKNRALLAKRDAFQAQLDNWYKQNGAPSDLAAYEAFLRDIGYLLPEGPDFSVTTSN
VDAEIASIAGPQLVVPVMNARYALNAANARWGSLYDALYGTDAISEADGAEKGRGYNP
KRGEKVIAWARAFLDQSVPLAGGRWADVAGLALTDGYLDVTLASGDKTGLMDPSQLAG
TFSEDGSVTSYLLRRNGLHVEICIDAKGAIGAADKANINDIRMESAITAIMDCEDSVA
AVDAEDKILAYSNWLGLMKGDLEEVVTKGDHVFTRTLNPDLEFTDPQGKPFTVASRSL
MLIRNVGHLMTNPAILDRDGAEVPEGIMDAMVTAVIALHDIGPNGRRKNSRRGSMYVV
KPKMHGPEEVAFAVEIFTRVEQALGMEPNTIKMGIMDEERRTTVNLKECIRAAKDRVV
FINTGFLDRTGDEIHTSMEAGPMIRKGDMKQAAWIAAYENWNVDIGLQCGLSGHAQIG
KGMWAMPDLMAAMLEQKIAHPKAGANTAWVPSPTAATLHATHYHQVDVAGVQAGLKSR
TRAKLSDILSVPVASRPNWTPEEIQRELDNNAQGILGYVVRWIDQGIGCSKVPDINNV
GLMEDRATLRISAQHMANWLHHGVVTEAQVIETLKRMAAIVDQQNAGDSAYRPMAADF
DTSIAFQAALDLVLKGREQPNGYTEPVLHRRRLELKATAIPAKV"
misc_feature 51781..53913
/gene="glcB"
/locus_tag="Avi_0057"
/note="Malate synthase G (MSG), monomeric enzyme present
in some bacteria. In general, malate synthase catalyzes
the Claisen condensation of glyoxylate and acetyl-CoA to
malyl-CoA , which hydrolyzes to malate and CoA. This
reaction is part of the glyoxylate...; Region:
malate_synt_G; cd00728"
/db_xref="CDD:48434"
misc_feature order(52771..52773,53047..53049,53125..53127,53131..53133,
53644..53646)
/gene="glcB"
/locus_tag="Avi_0057"
/note="active site"
/db_xref="CDD:48434"
gene complement(54130..54828)
/locus_tag="Avi_0061"
/db_xref="GeneID:7389053"
CDS complement(54130..54828)
/locus_tag="Avi_0061"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548021.1"
/db_xref="GI:222147064"
/db_xref="GeneID:7389053"
/translation="MRIRNALTVLGLFSTLAITGCSTTSEADSKKTAEAAPVVAPASV
ETAQIFDDSYGPVTDAGYALPGIPIQKVNPKFRRQIIAFDTTERPGTIIVNTKERFLY
YVLPNGKAIRYGIGVGKDGFAWQGQAYIAWKQEWPTWHPPKEMAVRKPEVAKYVENGM
GPSISNPLGARAMYLFNDKGQDTLFRIHGSPEWASIGTAASSGCIRMINQDVIDLYSR
VLPGKATKVIVQQS"
misc_feature complement(54133..>54672)
/locus_tag="Avi_0061"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: ErfK; COG1376"
/db_xref="CDD:31566"
misc_feature complement(54142..54564)
/locus_tag="Avi_0061"
/note="L,D-transpeptidase catalytic domain; Region: YkuD;
pfam03734"
/db_xref="CDD:202749"
gene 54930..55490
/locus_tag="Avi_0062"
/db_xref="GeneID:7389054"
CDS 54930..55490
/locus_tag="Avi_0062"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548022.1"
/db_xref="GI:222147065"
/db_xref="GeneID:7389054"
/translation="MPSLASQIAEDWLFCNRLGAGKEKIMTILTISVKNTLIDGRQSE
RALMIRRGTQLLLDQMRHAVLPELSLASGRRADLISVSDKGEIWITEIKSSIEDFRVD
RKWPDYRQHCDRLFFATLPDVPQEIFPQECGLIVSDGYGAHLLRDAPEHRLAPATRKS
VMLAFSRAAAQRLMRAEWDAAPQFLP"
misc_feature 55005..55463
/locus_tag="Avi_0062"
/note="Protein of unknown function (DUF1052); Region:
DUF1052; pfam06319"
/db_xref="CDD:115006"
gene complement(55510..56085)
/gene="actR"
/locus_tag="Avi_0063"
/db_xref="GeneID:7389055"
CDS complement(55510..56085)
/gene="actR"
/locus_tag="Avi_0063"
/codon_start=1
/transl_table=11
/product="two component response regulator"
/protein_id="YP_002548023.1"
/db_xref="GI:222147066"
/db_xref="GeneID:7389055"
/translation="MTQDMPITHEEGAADLGPDATLLIVDDDQPFLRRLARAMETRGF
QVDIASSVAEGIAKAKTAAPKYAVVDLRLGDGNGLDVIQAIRESRTDTRIIVLTGYGN
IATAVTAVKLGAVDYLSKPADADDVFNALTQRPGEKADVPENPMSADRVRWEHIQRVY
EACERNVSETARRLNMHRRTLQRILAKRAPK"
misc_feature complement(55513..56037)
/gene="actR"
/locus_tag="Avi_0063"
/note="Response regulator consisting of a CheY-like
receiver domain and a Fis-type HTH domain [Signal
transduction mechanisms / Transcription]; Region: COG4567"
/db_xref="CDD:34205"
misc_feature complement(55687..56019)
/gene="actR"
/locus_tag="Avi_0063"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(55723..55728,55735..55737,55792..55794,
55852..55854,55876..55878,56005..56010))
/gene="actR"
/locus_tag="Avi_0063"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(55876..55878)
/gene="actR"
/locus_tag="Avi_0063"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(55852..55860,55864..55869))
/gene="actR"
/locus_tag="Avi_0063"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(55720..55728)
/gene="actR"
/locus_tag="Avi_0063"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(<55534..55614)
/gene="actR"
/locus_tag="Avi_0063"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene complement(56244..57548)
/gene="actS"
/locus_tag="Avi_0064"
/db_xref="GeneID:7389056"
CDS complement(56244..57548)
/gene="actS"
/locus_tag="Avi_0064"
/codon_start=1
/transl_table=11
/product="two component sensor kinase"
/protein_id="YP_002548024.1"
/db_xref="GI:222147067"
/db_xref="GeneID:7389056"
/translation="MSAKTDIRMHFGTSSRRLRLETLVRLRWLAVAGQTITLAIVALV
LQFPMPVLAAAILIGALAVVNFLLQLAFPSTQRLEPIWTLAILALDLCQMGALLFITG
GLANPFAPLICVPVIVVFASQPLRHSMALLGLAMVCISVQAFTPFPLPWYADYIDRGG
PVMLVAIWCSIVSMTAFAAFYAYRVSKEANLLADALAATELVLQKEKHLSQLDGLAAA
AAHELGTPLATISVVAKEMERELGKDPRFGEDVQLLRSQSERCRDILKRLTTLSAEDE
AHMRQLPLSSLIEEVIAPHRDFGIKLTVVEVSERASEPVGNRNPGILYGLGNLIENAL
DYARDQVTITVEHDNRHVTIIIEDDGEGFAPDILLRIGEPYVTSRKSDARAGGLGLGL
FIAKTLLERSGAVLTFENRGTSSPGARVTVRWPRREMETPTK"
misc_feature complement(56253..57263)
/gene="actS"
/locus_tag="Avi_0064"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(56733..56924)
/gene="actS"
/locus_tag="Avi_0064"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(56745..56747,56757..56759,56766..56768,
56778..56780,56787..56789,56799..56801,56850..56852,
56859..56861,56871..56873,56880..56882,56892..56894,
56904..56906))
/gene="actS"
/locus_tag="Avi_0064"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(56886..56888)
/gene="actS"
/locus_tag="Avi_0064"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(56277..56573)
/gene="actS"
/locus_tag="Avi_0064"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(56289..56291,56295..56300,56319..56321,
56325..56327,56373..56384,56460..56465,56469..56471,
56475..56477,56481..56483,56544..56546,56553..56555,
56565..56567))
/gene="actS"
/locus_tag="Avi_0064"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(56553..56555)
/gene="actS"
/locus_tag="Avi_0064"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(56376..56378,56382..56384,56463..56465,
56469..56471))
/gene="actS"
/locus_tag="Avi_0064"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(57585..60047)
/gene="hrpB"
/locus_tag="Avi_0067"
/db_xref="GeneID:7389057"
CDS complement(57585..60047)
/gene="hrpB"
/locus_tag="Avi_0067"
/codon_start=1
/transl_table=11
/product="DEAD box-like helicase"
/protein_id="YP_002548025.1"
/db_xref="GI:222147068"
/db_xref="GeneID:7389057"
/translation="MAFSLPPYPVSEILPPLAKALREGNRAVLSAPPGAGKTTLVPLY
LLDQPWRGDNRIILLEPRRLAARAAASRMASLIGETVGETVGYRMRLDNRISAKTRIE
VVTEGVFARMILEDPELSGIAAVLFDEFHERSLDADFGLALALDCQSALRDDLRLIVM
SATLDVQRMAGLMQDPPVLESAGRSFPIDIRHRDRPGTERIEDSVTSAILDAHAHESG
SILAFLPGQAEIRRVAERLEGRLPAATLIAPLYGNLSQAEQDQAIKPTTPGTRKVVLA
TSIAETSITIDGVRIVIDSGLQRLPVYEPSTGITRLETTRVSRASADQRAGRAGRTEP
GIAIRLWHAGQTAAMPAFTPPEILASDLSGLVMDMAHWGVTDASALSFIDQPPAAALK
EARNLLVALSALDDQGHLTAKGKIMRGLGLPPRLAAMVIAAAEQGQAKTASDIAVLLT
EQGLGGTDIDLEERLRRFRSDRSERASAARKLAERLTKDLPKRQAAATPALAGVLLLH
AYPDRIALKRGAPGRYVMANGRGAELAQTERLAASDMLVIADLTGRAAQGRILSAAEI
RLSDIEESLPAAIIQGDESFFDPPSGQVRARRVKRIGAIILEETPLGRPSGEGATKAL
AEGLRQLGLERLDFSKNAEQLRQRIGFLHRTLGTPWPDMSDEALLDRLEDWFIPFQTG
VRSLADISMGGIIDGLKALVPYEAQRDLDQMAPTHFTAPTGMSHPIQYDGDEPKLTIR
VQELFGLKNHPAIGGGRLPLLLELTSPAHRPIQTTRDLPGFWTGSWSDVRADMRGRYP
RHPWPDDPAAAAPTTRAKPRGT"
misc_feature complement(57591..60023)
/gene="hrpB"
/locus_tag="Avi_0067"
/note="ATP-dependent helicase HrpB; Region: DEAH_box_HrpB;
TIGR01970"
/db_xref="CDD:162630"
misc_feature complement(59556..59966)
/gene="hrpB"
/locus_tag="Avi_0067"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(59934..59948)
/gene="hrpB"
/locus_tag="Avi_0067"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(59655..59666)
/gene="hrpB"
/locus_tag="Avi_0067"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature complement(59028..59483)
/gene="hrpB"
/locus_tag="Avi_0067"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(59211..59219,59292..59297,59364..59375))
/gene="hrpB"
/locus_tag="Avi_0067"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(59055..59057,59064..59066,59076..59078,
59193..59195))
/gene="hrpB"
/locus_tag="Avi_0067"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature complement(<58692..58871)
/gene="hrpB"
/locus_tag="Avi_0067"
/note="Helicase associated domain (HA2); Region: HA2;
pfam04408"
/db_xref="CDD:190974"
misc_feature complement(57657..58025)
/gene="hrpB"
/locus_tag="Avi_0067"
/note="ATP-dependent helicase C-terminal; Region: HrpB_C;
pfam08482"
/db_xref="CDD:149509"
gene complement(60130..61086)
/gene="arcB"
/locus_tag="Avi_0068"
/db_xref="GeneID:7389058"
CDS complement(60130..61086)
/gene="arcB"
/locus_tag="Avi_0068"
/note="catalyzes the formation of L-proline from
L-ornithine"
/codon_start=1
/transl_table=11
/product="ornithine cyclodeaminase"
/protein_id="YP_002548026.1"
/db_xref="GI:222147069"
/db_xref="GeneID:7389058"
/translation="MLVLNEDETAHALGWANLIGALKDMFACDCRMPVRHHHTVEVPG
RADATLLLMPAWLPGKYCGVKLVSVFPDNHLSGLPAVQGGYLLTSGETGAMLALIDGG
VLTARRTAAASALAASYLAREDASHLLMVGTGRLSLHLIEAHASIRPLTQISIWGRNS
AKAEETAAAARALGFSAQAVTEIEEVARQADIISCATLSTDPLIKGDWLKPGAHVDLV
GGFRPVMREADDTAIRRARVYVDTRAGAMAEAGDIVQPLRNGSLTAEQIQGELTELVK
GTVDGRKSAEEITLFKSVGAALEDLAGAILAYETVKARQGRL"
misc_feature complement(60145..61086)
/gene="arcB"
/locus_tag="Avi_0068"
/note="ornithine cyclodeaminase; Validated; Region:
PRK06141"
/db_xref="CDD:180421"
misc_feature complement(60148..>60897)
/gene="arcB"
/locus_tag="Avi_0068"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene 61729..63213
/locus_tag="Avi_4501"
/db_xref="GeneID:7389059"
rRNA 61729..63213
/locus_tag="Avi_4501"
/product="16S ribosomal RNA"
/db_xref="GeneID:7389059"
gene 63605..63681
/locus_tag="Avi_4551"
/db_xref="GeneID:7387975"
tRNA 63605..63681
/locus_tag="Avi_4551"
/product="tRNA-Ile"
/db_xref="GeneID:7387975"
gene 63766..63841
/locus_tag="Avi_4552"
/db_xref="GeneID:7387991"
tRNA 63766..63841
/locus_tag="Avi_4552"
/product="tRNA-Ala"
/db_xref="GeneID:7387991"
gene 64487..67422
/locus_tag="Avi_4502"
/db_xref="GeneID:7387992"
rRNA join(64487..64650,64730..67422)
/locus_tag="Avi_4502"
/product="23S ribosomal RNA"
/db_xref="GeneID:7387992"
gene 67657..67775
/locus_tag="Avi_4503"
/db_xref="GeneID:7387976"
rRNA 67657..67775
/locus_tag="Avi_4503"
/product="5S ribosomal RNA"
/db_xref="GeneID:7387976"
gene 67893..67969
/locus_tag="Avi_4553"
/db_xref="GeneID:7387977"
tRNA 67893..67969
/locus_tag="Avi_4553"
/product="tRNA-Met"
/db_xref="GeneID:7387977"
gene 68122..68226
/locus_tag="Avi_0069"
/note="transposase fragment; Incomplete gene (pseudogene)"
/pseudo
/db_xref="GeneID:7387993"
gene complement(68353..69735)
/locus_tag="Avi_0070"
/db_xref="GeneID:7389060"
CDS complement(68353..69735)
/locus_tag="Avi_0070"
/codon_start=1
/transl_table=11
/product="MFS permease"
/protein_id="YP_002548027.1"
/db_xref="GI:222147070"
/db_xref="GeneID:7389060"
/translation="MNIEQRITAAAPLVDPQAEISARLERLPVTREVFWARNIVGAAT
FFDGYTVIAIAYAMPVLVREWNLTPGQTGMILSMGYLGQLIGAVCFGWMAEKIGRLKV
LLFTILLFVSMDIACLFAVGAGMMMAFRFVQGIGTGGEVPVASAYINELIGSKGRGRF
FLLYEVMFLLGLVGAGLIGYFMVPLYGWKAMFVVGLVPAILMIPLRWFLHESPRWLVA
NGRYEDADRIVSKLENSARAAGNELPEPKIVAAPMRRKSDWRELFQGIYLKRTLSIWA
MWFCAYMVANGTITWLPTLYRQTFNLPLETSILYGFITSVGGVIAAIICAFLIDKVGR
KRWYTGALLIAPIPLVILAWLGATSAVQVLVLAGLAYAIVQTVTFSLYLYSSEIYPTR
LRAIGTGTGSAWLRLGSSAGPIAVGWVMSSMGIQYVFGAFAVILLVGALVTALFAVET
KDRVLEELSP"
misc_feature complement(<69109..69621)
/locus_tag="Avi_0070"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(68476..69603)
/locus_tag="Avi_0070"
/note="benzoate transport; Region: 2A0115; TIGR00895"
/db_xref="CDD:162095"
misc_feature complement(order(69220..69222,69238..69243,69250..69255,
69289..69291,69298..69303,69310..69315,69322..69327,
69463..69468,69472..69477,69487..69489,69496..69501,
69508..69510,69559..69564,69568..69576,69583..69585))
/locus_tag="Avi_0070"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
misc_feature complement(68395..>68940)
/locus_tag="Avi_0070"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
gene complement(70056..71003)
/gene="dapA"
/locus_tag="Avi_0071"
/db_xref="GeneID:7389061"
CDS complement(70056..71003)
/gene="dapA"
/locus_tag="Avi_0071"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate synthase"
/protein_id="YP_002548028.1"
/db_xref="GI:222147071"
/db_xref="GeneID:7389061"
/translation="MQPMDMRGLSPAPVTAFTRDGEVDYAANTRIAKWLAGMDGVKSL
VILGHAGEGTFLTEEERLKLIRTYVEAVDGRIPIIAGITGEGTRVAAEEAKKCKAAGA
TGALVYPNHGWLRFGFQKGAPQDRYKAIWQESGLQCILFQYPDATKASYDLDTQLAIA
TQDGVVATKNGVRNMKRWYVEIPELKKANPNLQILSCHDEWLLPTMFDVDGLLVGYGN
IAPELLIDLIKAGKAQNYPEARKLFEQLLPVTRAVYHRGSHMEGTVALKLGLVHRGVL
EHATIREPLKNLGEKAEAEIFAAFDAAGIGRVEQLMAAE"
misc_feature complement(70131..71000)
/gene="dapA"
/locus_tag="Avi_0071"
/note="Dihydrodipicolinate synthase/N-acetylneuraminate
lyase [Amino acid transport and metabolism / Cell envelope
biogenesis, outer membrane]; Region: DapA; COG0329"
/db_xref="CDD:30677"
misc_feature complement(70131..70979)
/gene="dapA"
/locus_tag="Avi_0071"
/note="Dihydrodipicolinate synthase family; Region:
DHDPS-like; cd00408"
/db_xref="CDD:188630"
misc_feature complement(order(70497..70499,70581..70583,70854..70862,
70869..70871,70968..70970))
/gene="dapA"
/locus_tag="Avi_0071"
/note="inhibitor site; inhibition site"
/db_xref="CDD:188630"
misc_feature complement(order(70365..70367,70497..70499,70581..70583,
70854..70862,70869..70871))
/gene="dapA"
/locus_tag="Avi_0071"
/note="active site"
/db_xref="CDD:188630"
misc_feature complement(order(70152..70157,70626..70628,70668..70673,
70743..70748,70839..70844,70857..70859))
/gene="dapA"
/locus_tag="Avi_0071"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:188630"
misc_feature complement(70497..70499)
/gene="dapA"
/locus_tag="Avi_0071"
/note="catalytic residue [active]"
/db_xref="CDD:188630"
gene 71167..72198
/locus_tag="Avi_0072"
/db_xref="GeneID:7389062"
CDS 71167..72198
/locus_tag="Avi_0072"
/codon_start=1
/transl_table=11
/product="transcriptional regulator LacI family"
/protein_id="YP_002548029.1"
/db_xref="GI:222147072"
/db_xref="GeneID:7389062"
/translation="MNVRTEDAGRLGRVTILDVASAAGVSKSTVSRILDERLPRSDNE
TARRVRKIAEELGYVRDISAASLRRGSTMTVGIIVPRLTDTVMAMLYESLAKACSRSG
RFAIVATTDDKPRADRLAAESLLNRGVDGLILSTARLDDDFADDLIARGIPHVFALRT
AGASLCSVGDDRLGGYLATRHLIDLGHRHIGVIAGPSYASSAVGRVEGYRQAMQEAGI
PVFPEAIVPSTFGIDAGAEAAEYLMRLDNRPTAIFAVNDNTAIGALSGLSRLGVSVPK
EVSVVGYNDIPIVNHLPTPLTTVRVPFDQIASHALDLLLSETVSAEDRIRISAPTLIP
RKSTAKPAL"
misc_feature 71206..72189
/locus_tag="Avi_0072"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature 71218..71373
/locus_tag="Avi_0072"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature order(71239..71253,71257..71262,71269..71271,71287..71292,
71299..71301,71338..71340,71347..71349,71356..71361,
71365..71370)
/locus_tag="Avi_0072"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature 71338..71367
/locus_tag="Avi_0072"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature 71386..72180
/locus_tag="Avi_0072"
/note="Type 1 periplasmic binding fold superfamily;
Region: Periplasmic_Binding_Protein_Type_1; cl10011"
/db_xref="CDD:209116"
gene complement(72244..73248)
/locus_tag="Avi_0073"
/db_xref="GeneID:7389063"
CDS complement(72244..73248)
/locus_tag="Avi_0073"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548030.1"
/db_xref="GI:222147073"
/db_xref="GeneID:7389063"
/translation="MKFTPNFFKFIRLLSVFALSSASSLAMAAEGPSRLPDWLKDHVG
EGTGQIAPVVLERARALYLARVAEGKISNACYFAMDATRPNDRTDGASGGRFYVICEA
ERSFRVISAGHGGGRNLGGAVNFSNGRECAKNFGNALDSNLTAGGAYMTSEIKTTFKG
YYRTSANQESFLTRSFVQFDGTGETANARQRAIGGHAAALVSGICMLKKPDSTYANRD
GYVPRGNLVTYPAGRSDGCTSWSPDDAPQVLSLVKDNPTTLYIYPESRDINAVSRDLA
AGRSSSGNKTYWNNACLKEIGSPQFWPKEKLEPIIAQYKQDHPAPPPRPIPICDVPSH
"
misc_feature complement(72463..>72855)
/locus_tag="Avi_0073"
/note="L,D-transpeptidase catalytic domain; Region:
YkuD_2; pfam13645"
/db_xref="CDD:205822"
gene complement(73476..74465)
/gene="idhA"
/locus_tag="Avi_0074"
/db_xref="GeneID:7389064"
CDS complement(73476..74465)
/gene="idhA"
/locus_tag="Avi_0074"
/codon_start=1
/transl_table=11
/product="myo-inositol 2-dehydrogenase"
/protein_id="YP_002548031.1"
/db_xref="GI:222147074"
/db_xref="GeneID:7389064"
/translation="MVKKLALLGAGRIGKVHAKAIGEDKRAQFVAVADAFPEAAKAIA
DAYGAAVKTIEEIEADASIDAVLICTPTNTHSDLIERFTAAGKAVFCEKPIDLDVKRA
EACAEVVRANGGKVMLGFNRRFDPHFQAVRKAIDDGKIGKVEMVTITSRDPGAPPPDY
IKVSGGIFRDMTIHDFDIARFLLGEEITSVMASAAVLVDPKIGELGDYDSASLVLTTA
SGRQAIISNSRRATYGYDQRIEVHGSEGSVAAENQRPVSIEIATKDGYTRPPLHDFFM
TRYTAAYAAEISAFLDFIESGKAPSPSIEDGLIALKLADAAVKAAKEKIVVTL"
misc_feature complement(73545..74465)
/gene="idhA"
/locus_tag="Avi_0074"
/note="Predicted dehydrogenases and related proteins
[General function prediction only]; Region: MviM; COG0673"
/db_xref="CDD:31017"
misc_feature complement(74106..74459)
/gene="idhA"
/locus_tag="Avi_0074"
/note="Oxidoreductase family, NAD-binding Rossmann fold;
Region: GFO_IDH_MocA; pfam01408"
/db_xref="CDD:201778"
misc_feature complement(73746..74072)
/gene="idhA"
/locus_tag="Avi_0074"
/note="Oxidoreductase family, C-terminal alpha/beta
domain; Region: GFO_IDH_MocA_C; pfam02894"
/db_xref="CDD:202453"
gene 74678..75511
/locus_tag="Avi_0075"
/db_xref="GeneID:7388838"
CDS 74678..75511
/locus_tag="Avi_0075"
/codon_start=1
/transl_table=11
/product="transcriptional regulator RpiR family"
/protein_id="YP_002548032.1"
/db_xref="GI:222147075"
/db_xref="GeneID:7388838"
/translation="MTDITVAETSAPDTIKAFEERLMQVSDTLPKRLKQCADYVGANK
DRIAVSTVAEMAEGAGVQPSAFMRFCQIFGFSGFSEMQKLFRDSLVGGWPDYSTRLHH
LRETASGSPSALLAEFVEAGRVSLEGLLQTVDPQLLEQAVACLSTAGMIHIVGLRRSF
PVASYIAYAFEKMAVPAMLHSGVGKLESQHAIRDGDVVLAITFAPYSTETLDLVEQVS
ARGISVVAITDTVVNPLRKLGTITLSVAEVDFGAFRSLSATLCLAIALSVAVGTARQQ
D"
misc_feature 74717..75508
/locus_tag="Avi_0075"
/note="Transcriptional regulators [Transcription]; Region:
RpiR; COG1737"
/db_xref="CDD:31923"
misc_feature 74732..74917
/locus_tag="Avi_0075"
/note="Helix-turn-helix domain, rpiR family; Region:
HTH_6; pfam01418"
/db_xref="CDD:201784"
misc_feature 75089..75484
/locus_tag="Avi_0075"
/note="RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E. coli,
rpiR negatively regulates the expression of rpiB gene.
Both rpiB and rpiA are ribose phosphate...; Region:
SIS_RpiR; cd05013"
/db_xref="CDD:88408"
misc_feature order(75152..75154,75281..75283)
/locus_tag="Avi_0075"
/note="putative active site [active]"
/db_xref="CDD:88408"
gene 75639..77543
/gene="iolC"
/locus_tag="Avi_0076"
/db_xref="GeneID:7388259"
CDS 75639..77543
/gene="iolC"
/locus_tag="Avi_0076"
/codon_start=1
/transl_table=11
/product="myo-inositol catabolism IolC protein"
/protein_id="YP_002548033.1"
/db_xref="GI:222147076"
/db_xref="GeneID:7388259"
/translation="MPKLDLITIGRSSVDLYGAQVGGRLEDMASFNKYIGGSPTNIAA
GTARLGLKSALITRVGDEHMGRFIREQLVREGVDVRGVKTDPKRLTALVLLGIRDEHQ
FPLIFYRENCADMALCEDDIDPAFVAESGCVCVTGTHLSHPNTEAAVLKALRLARENG
AKTALDIDYRPNLWGLAGHGDGESRFIESQAVTTKLQSTLHWFDLIVGTEEEFHIAGG
STNTVEALRAVRNVSKATLVCKRGALGAVVFDGDIPDSLDDGQTGEGFPIEVFNVLGA
GDGFMSGLLKGWLTGKDWPTALKYANACGAFAVSRHGCTPAYPSLEELDYFFKTGIRN
KALRKDAALEQVHWSTNRDGEWPQMRVFAFDHRMQLEAMCDEAGVSHARIGAFKQLCL
KAAQQVANGQPGYGILCDSRLGRDALYQASGSGLWIGRPVEWPGSRPLTLEPELGEDF
GGLTEWPVENVVKVLCFYHPDDDAALKENQENTVKRLFTAARRNRLEMLLEIIPSKVG
STDDDTAATIIQRFYDIGVYPDWWKLEPMKTTGAWANAVDAISRNDPYTRGIVVLGLD
APAAELEESFKTAASFDLVKGFAVGRTIFGDAARKWLAGTLSDGDAIADMVGKYTSLC
QVWDRARSNA"
misc_feature 75651..76625
/gene="iolC"
/locus_tag="Avi_0076"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature 75651..76583
/gene="iolC"
/locus_tag="Avi_0076"
/note="2-keto-3-deoxygluconate kinase (KdgK)
phosphorylates 2-keto-3-deoxygluconate (KDG) to form
2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the
common intermediate product, that allows organisms to
channel D-glucuronate and/or D-galacturinate into the...;
Region: KdgK; cd01166"
/db_xref="CDD:29350"
misc_feature order(75747..75752,75759..75761,75915..75917,75957..75959,
75963..75965,76050..76052,76146..76148,76461..76463,
76470..76472,76578..76580)
/gene="iolC"
/locus_tag="Avi_0076"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29350"
misc_feature order(76356..76358,76371..76373,76434..76436,76461..76469,
76476..76478,76542..76544,76554..76556)
/gene="iolC"
/locus_tag="Avi_0076"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29350"
misc_feature 76605..77531
/gene="iolC"
/locus_tag="Avi_0076"
/note="Uncharacterized protein conserved in bacteria
(DUF2090); Region: DUF2090; pfam09863"
/db_xref="CDD:150524"
gene 77675..79498
/gene="iolD"
/locus_tag="Avi_0077"
/db_xref="GeneID:7388260"
CDS 77675..79498
/gene="iolD"
/locus_tag="Avi_0077"
/codon_start=1
/transl_table=11
/product="acetolactate synthase"
/protein_id="YP_002548034.1"
/db_xref="GI:222147077"
/db_xref="GeneID:7388260"
/translation="MKTVRLTAAQALVRYLANQMTPEGVPFIAGVWAIFGHGNVAGLG
EALQGAKDSVTTWRGQNEQSMAHAAIAYAKQLGRRRAMAVTSSIGPGALNMVTAAALA
HVNRLPVLLLPGDVFANRGPDPVLQQVEDFNDGVMSANDCFRPVSRYFDRISRPEHLL
TALPRAFRTMTDPADCGPVTLAFCQDTQAEAYDYPESFFAPKIWHIRRPQPDAFELET
AIAAIKSAKSPVIVAGGGVHFSGATQTLRDFAQKHQIPVVETQAGKSALPWDAALNFG
PVGVTGAASANTICEGADLVIGVGTRFQDFTTGSWALFKNPNRKILALNVQAYDSAKH
DALPLVADAKIGLELISSALGEHRFATPDAGLKADWFAKADAVTAAPKDGNSLPTDMQ
VIGAVQRASRDNTVVMCAAGTMPGELHQLWKSKLPLSYHMEYGFSCMGYEIAGGMGIK
MAEPERDVIVMVGDGSYMMMNSELVTACALGVKITVVITDNRGYGCINRLQMGTGGAE
FNNLYAHTSHIHAPEIDFAAHAASMGADSSKVTTIAELETALANAREATRPTVIVIDT
DPYPTPEAGGYWWDVAVPEVSARDEVQQARARYEAALKERQ"
misc_feature 77675..79495
/gene="iolD"
/locus_tag="Avi_0077"
/note="Acetolactate synthase [Amino acid transport and
metabolism]; Region: COG3962"
/db_xref="CDD:33743"
misc_feature 77702..78223
/gene="iolD"
/locus_tag="Avi_0077"
/note="Pyrimidine (PYR) binding domain of POX and related
proteins; Region: TPP_PYR_POX_like; cd07035"
/db_xref="CDD:132918"
misc_feature order(77753..77755,77777..77782,77792..77794,77804..77806,
77828..77842,77852..77857,77864..77866,77873..77878,
77885..77890,77894..77896,77900..77905,77942..77944,
77963..77965,77975..77977,77984..77989)
/gene="iolD"
/locus_tag="Avi_0077"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(77777..77785,77792..77794,77804..77806,77831..77833,
77837..77842,77852..77857,77861..77863,77942..77944,
77951..77956,77960..77965,77972..77974,78098..78100,
78107..78109)
/gene="iolD"
/locus_tag="Avi_0077"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(77777..77779,77858..77860,77942..77944,77954..77956)
/gene="iolD"
/locus_tag="Avi_0077"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132918"
misc_feature 78320..78724
/gene="iolD"
/locus_tag="Avi_0077"
/note="Thiamine pyrophosphate enzyme, central domain;
Region: TPP_enzyme_M; pfam00205"
/db_xref="CDD:201080"
misc_feature 78848..79438
/gene="iolD"
/locus_tag="Avi_0077"
/note="Thiamine pyrophosphate (TPP) family, IolD
subfamily, TPP-binding module; composed of proteins
similar to Rhizobium leguminosarum bv. viciae IolD. IolD
plays an important role in myo-inositol catabolism;
Region: TPP_IolD; cd02003"
/db_xref="CDD:48166"
misc_feature order(78989..78991,79061..79072,79145..79147,79151..79153)
/gene="iolD"
/locus_tag="Avi_0077"
/note="TPP-binding site; other site"
/db_xref="CDD:48166"
gene 79500..80402
/gene="iolE"
/locus_tag="Avi_0078"
/db_xref="GeneID:7388261"
CDS 79500..80402
/gene="iolE"
/locus_tag="Avi_0078"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548035.1"
/db_xref="GI:222147078"
/db_xref="GeneID:7388261"
/translation="MILYGTNPIAWSNDDDRTLGAHISLDQCLDETSKIGFDGIEKGH
KFPQEPAALRAVLEPRGLRYVSGWHSLNLLTNSIEDEKAAMQPALDLLKAMGSKVIIV
CETSNAIHGDDGKPVNDRPKLADSEWAAFGAGVEALAEFAAAQGIALVYHHHMGTIVE
SEEEIDKLMANTGPHAKLLLDTGHCLFGGGNPERVATNYMSRVGHIHAKNIRPVIAKQ
VRDEKLSFLEGVRRGVFTVPGDSEGGVNFPPVLKIAGEHGYQGWLVIEAEQDPDVRNP
YDYQSLGLASLKAMAKAAGLDKAA"
misc_feature 79509..80360
/gene="iolE"
/locus_tag="Avi_0078"
/note="Sugar phosphate isomerases/epimerases [Carbohydrate
transport and metabolism]; Region: IolE; COG1082"
/db_xref="CDD:31279"
gene 80511..80717
/locus_tag="Avi_0079"
/db_xref="GeneID:7388262"
CDS 80511..80717
/locus_tag="Avi_0079"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548036.1"
/db_xref="GI:222147079"
/db_xref="GeneID:7388262"
/translation="MQFLDPHHPFFKPLWVRILVVLVPLVWAGIELYNGSQTWAMISL
ALGFYAGLQLFWVFYKTPGKGDEQ"
gene 80714..81532
/gene="iolB"
/locus_tag="Avi_0080"
/db_xref="GeneID:7388263"
CDS 80714..81532
/gene="iolB"
/locus_tag="Avi_0080"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548037.1"
/db_xref="GI:222147080"
/db_xref="GeneID:7388263"
/translation="MTNLLRKPVGTTGKVHDITPESANWGYVGFGLYKLKAGEKAAEQ
TGETEVILVLVEGKAEISGAGKSFGELGDRMNVFEKKPPHCVYIPAGSEWSATATTDV
TLAVCTAPAKPGREAQVIGPAGVALTERGKGANTRYIFPIAMEERDVADSLLVTEVFT
PQGNWSSYPPHRHDEDNFPVMTYLEETYYHRLNPAQGFGFQRVFTEDGTLDETMAVSD
GDVVLVPKGHHPCGAPYGYEMYYLNVMAGPMRKWRFQNHPDHDWIFKRDNPPKA"
misc_feature 80714..81520
/gene="iolB"
/locus_tag="Avi_0080"
/note="Uncharacterized enzyme involved in inositol
metabolism [Carbohydrate transport and metabolism];
Region: IolB; COG3718"
/db_xref="CDD:33513"
gene complement(81529..82008)
/locus_tag="Avi_0081"
/db_xref="GeneID:7388264"
CDS complement(81529..82008)
/locus_tag="Avi_0081"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548038.1"
/db_xref="GI:222147081"
/db_xref="GeneID:7388264"
/translation="MLEPFDQWDIQPFGKLKPIPYTARFSLAEYETIKKGFIPNCMED
KWVIFFAAHSLFLHRSWTGAAVYRVDFSERSNTFNVKNAYVDEAVCQKDNSAYDAALL
SFLIDNILLSRNSPFPMIEANRNLPAGAYQHHIAGTGYRETSFKPPRPWWRFWGRDN"
gene complement(82022..82423)
/locus_tag="Avi_0082"
/db_xref="GeneID:7388265"
CDS complement(82022..82423)
/locus_tag="Avi_0082"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548039.1"
/db_xref="GI:222147082"
/db_xref="GeneID:7388265"
/translation="MPFRRLLISIALVACATGTAQAASESRYTSTDIKSDIIGKRIYL
ATPMGGEFPLNYRTSGVVDGSGEALGLGRFVKPNDTGKWWINGDRLCQRFTTWYKGTP
MCFELYKTGDKSLNWIRDNGQKGTARIGQSL"
gene 82554..83252
/gene="csgA"
/locus_tag="Avi_0083"
/db_xref="GeneID:7388266"
CDS 82554..83252
/gene="csgA"
/locus_tag="Avi_0083"
/codon_start=1
/transl_table=11
/product="C factor"
/protein_id="YP_002548040.1"
/db_xref="GI:222147083"
/db_xref="GeneID:7388266"
/translation="MTSLRPSYSALVIGASGGIGSALCEVLRQDSACQDVATLSRRAD
GFDLTDEASIAACADRLAGQHQSFDLILCATGALTINGVGPEKAIKAVTSEAMAAQFA
LNAIGPALVLKYFTPLLAKNSRSLMGFLSARVGSIGDNRLGGWISYRASKAALNQIVH
TAAIEIGRTRPQAVVVSLHPGSVDTGLSANFAVGHERFAPDHSAGLLLSVLDTLTPAQ
TGGFFAYDGSVIEW"
misc_feature 82581..83249
/gene="csgA"
/locus_tag="Avi_0083"
/note="carbonyl reductase sniffer-like, classical (c)
SDRs; Region: carb_red_sniffer_like_SDR_c; cd05325"
/db_xref="CDD:187586"
misc_feature 82581..83207
/gene="csgA"
/locus_tag="Avi_0083"
/note="short chain dehydrogenase; Provisional; Region:
PRK06924"
/db_xref="CDD:180753"
misc_feature order(82593..82595,82599..82610,82674..82676,82692..82697,
82773..82784,82860..82862,82941..82949,82995..82997,
83007..83009,83088..83102,83106..83108,83112..83117)
/gene="csgA"
/locus_tag="Avi_0083"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187586"
misc_feature order(82695..82697,82713..82715,82842..82844,82857..82859,
82866..82874,82881..82883,82890..82895,82953..82973,
82989..82991,82998..83003,83010..83015,83022..83027,
83031..83036,83043..83048,83244..83249)
/gene="csgA"
/locus_tag="Avi_0083"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187586"
misc_feature order(82863..82865,82947..82949,82995..82997,83007..83009)
/gene="csgA"
/locus_tag="Avi_0083"
/note="active site"
/db_xref="CDD:187586"
gene 83320..83874
/locus_tag="Avi_0084"
/db_xref="GeneID:7388267"
CDS 83320..83874
/locus_tag="Avi_0084"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548041.1"
/db_xref="GI:222147084"
/db_xref="GeneID:7388267"
/translation="MSGLKSALFGLSVGLFSSVGAATAADFTFEDYFVGKTVAEGHFA
AINGVSRKFTVDLTGKWDGHVLTLREDFRFEDGTRDRKTWRFIKTGPTTYSGTREDVV
GNALVRLSGDTARFNYLVYLSPETQSNKVRFYDKMVLKPDGTVLNTAWVTKFGFPVAK
TTVSFHKAGHAAKVKAQKHLGIAK"
misc_feature 83341..83820
/locus_tag="Avi_0084"
/note="Protein of unknown function (DUF3833); Region:
DUF3833; pfam12915"
/db_xref="CDD:205146"
gene 83874..84644
/gene="idnO"
/locus_tag="Avi_0085"
/db_xref="GeneID:7388268"
CDS 83874..84644
/gene="idnO"
/locus_tag="Avi_0085"
/codon_start=1
/transl_table=11
/product="gluconate 5-dehydrogenase"
/protein_id="YP_002548042.1"
/db_xref="GI:222147085"
/db_xref="GeneID:7388268"
/translation="MVMSSSPRARVAWITGASSGIGRSLALKLAREGYIVGVSARRTE
DLMALAAENPDRIHAFPLDITDGNAVKQVVGDIEAKLGPIDMAVFSAGSYIRETAERF
DAEQLRRMVDLNLVGTGHCLEAVIAVMVARGKGRIGLVGSVSGYSGLPGGGIYGATKS
AMITLAEALRPGLLEKGVVISIINPGFVKTPLTDKNDFPMPFLVTAEQAADHIEKGME
AGKFEIAFPWQMVLSLKLLRLLPYPLYFALTRKMLRKT"
misc_feature 83907..84560
/gene="idnO"
/locus_tag="Avi_0085"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature order(83919..83921,83925..83930,83934..83936,83991..83999,
84141..84149,84291..84299,84336..84338,84348..84350,
84426..84437)
/gene="idnO"
/locus_tag="Avi_0085"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(84213..84215,84297..84299,84336..84338,84348..84350)
/gene="idnO"
/locus_tag="Avi_0085"
/note="active site"
/db_xref="CDD:187535"
gene complement(84714..85928)
/locus_tag="Avi_0086"
/db_xref="GeneID:7388269"
CDS complement(84714..85928)
/locus_tag="Avi_0086"
/codon_start=1
/transl_table=11
/product="cyclopropane-fatty-acyl-phospholipid synthase"
/protein_id="YP_002548043.1"
/db_xref="GI:222147086"
/db_xref="GeneID:7388269"
/translation="MTHADQQTATLSLTSAPLWQRVLCGWAGRLTHGHLTLLFPDGKE
HHVTGREAGPSAVLKLNNARPVWRVMSGGTLGFSRSYMDGDWDSPDIAGFLELAIVNE
GNWHGLMSPSALLGKLALLRHKLRRNSKAGSRRNIAFHYDLGNAFYRHWLDETMTYSS
ALYTHPGQSLGEAQAAKYQRIVEQLALGPDDHLLEIGCGWGGFAEHAIRASGCRVTGL
TLSTEQAAYARQRMQTAGYADRCDIRLEDYRDVQGRFTKIVSIEMFEAVGEENWPVYF
NRVRDLLADGGKAVVQVITLDEGRFEQYQREADFIQTYIFPGGMLPSVERFEISAMKA
GLKTRDTFRFGLDYERTLLTWDKSFTAHWSKIAPLGFDERFFRMWRYYLHYCAAGFRT
GRLDVVQFELEK"
misc_feature complement(84717..85547)
/locus_tag="Avi_0086"
/note="Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane]; Region: Cfa; COG2230"
/db_xref="CDD:32411"
misc_feature complement(<85203..85523)
/locus_tag="Avi_0086"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
misc_feature complement(85041..85352)
/locus_tag="Avi_0086"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(85146..85148,85185..85193,85269..85274,
85323..85343))
/locus_tag="Avi_0086"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(85925..86728)
/locus_tag="Avi_0087"
/db_xref="GeneID:7388270"
CDS complement(85925..86728)
/locus_tag="Avi_0087"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548044.1"
/db_xref="GI:222147087"
/db_xref="GeneID:7388270"
/translation="MSWSSAIFTGAVVHQRHRPKKHSLRYQVFCLLVDLDELPAIDKS
LWLLGYNRRAILRIDDRDHGLGIPGGLKAWVANHVERAGLNTEGMKVSMLCYPRMFGY
VFNPLTLYYCYGPSGTLLALLYEVENTFHERHTYVIPASVEEDGAIRHACAKQMYVSP
FMPMECLYRFKIVPPGETVTVAINEADEQGPLLYASFCGKRRTLDDRALAKVLVRYPL
MTLKVMGAIHWEALKLWVKGVPLHRHRKAQNPIASSIIPPEAANARSPS"
misc_feature complement(85979..86722)
/locus_tag="Avi_0087"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3496"
/db_xref="CDD:33299"
misc_feature complement(85979..86716)
/locus_tag="Avi_0087"
/note="Protein of unknown function (DUF1365); Region:
DUF1365; pfam07103"
/db_xref="CDD:203580"
gene complement(86725..88032)
/locus_tag="Avi_0088"
/db_xref="GeneID:7388271"
CDS complement(86725..88032)
/locus_tag="Avi_0088"
/codon_start=1
/transl_table=11
/product="amine oxidase flavin-containing"
/protein_id="YP_002548045.1"
/db_xref="GI:222147088"
/db_xref="GeneID:7388271"
/translation="MVGSGISGLSCAWLLSKGFDVTVFEAENRFGGHANTVNVAGPNG
PVAVDTGFIVYNDRNYPNLVALFDHLGVPNQASDMSFAASLDAGRFEYSGCGLAGLLG
QRSNVLRPRFWRMVADIMRFYREAPLLLERQDLTAATLGDYLDLEAYSNAFIEDHLLP
MGAAIWSTTAADMRAYPLNAFVRFFINHGLVTLKNRPQWRTVTGGSREYVLRIKQATK
ADFRANDPVKAIIRSALGVKIVTQSGYQDRFDQVVVATHADEALALLDDAQGLERALL
GCFDYTKNVAVLHSDTRLMPKRKQVWASWNYIGEERKAGEGPLCVTYWMNRLQGLDAS
LPLFVTLNPSRDIDESKVHQVFNYAHPLFDAKAIAAQRQLWQLQGRNRTWFCGAHFGS
GFHEDGLQSGLAVAEQLSGIARPWSVENQSGRIFVEPMLAAAQ"
misc_feature complement(86734..88032)
/locus_tag="Avi_0088"
/note="Predicted NAD/FAD-binding protein [General function
prediction only]; Region: COG2907"
/db_xref="CDD:32731"
misc_feature complement(87823..88029)
/locus_tag="Avi_0088"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
gene 88139..88897
/locus_tag="Avi_0089"
/db_xref="GeneID:7388272"
CDS 88139..88897
/locus_tag="Avi_0089"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma subunit protein"
/protein_id="YP_002548046.1"
/db_xref="GI:222147089"
/db_xref="GeneID:7388272"
/translation="MDCREWNFFRAVIQFSQEGVESPMTIIISQAALECHNKRVTAPR
LFRRSRLGGRSVPSGANGMIMKAETEDMSSMLAAVARERDVEAFETLFRHYGPRVKAY
MARQARDQQAAEELMQETMMVVWNKAALFDPTRGNVSAWIFTIARNLRVSAYRKQNRP
EFDPNDPAFVPDEVMPADKDLENRQDAERLHKAMGQLPQEQLELLQRSFFHEIPHSAL
AKEFNLPLGTVKSRIRMAFAKLRATLEDRSEEDR"
misc_feature 88370..88876
/locus_tag="Avi_0089"
/note="RNA polymerase sigma factor RpoE; Provisional;
Region: PRK09652"
/db_xref="CDD:182019"
misc_feature 88409..88615
/locus_tag="Avi_0089"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature order(88730..88732,88760..88762,88778..88783,88811..88813,
88817..88822,88826..88834,88838..88843,88847..88849)
/locus_tag="Avi_0089"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
misc_feature <88757..88864
/locus_tag="Avi_0089"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cl15761"
/db_xref="CDD:210161"
gene 88897..89589
/locus_tag="Avi_0090"
/db_xref="GeneID:7388273"
CDS 88897..89589
/locus_tag="Avi_0090"
/codon_start=1
/transl_table=11
/product="anti sigma factor protein"
/protein_id="YP_002548047.1"
/db_xref="GI:222147090"
/db_xref="GeneID:7388273"
/translation="MTVHHHVSDELLLDYANGSLAEGWGIAIATHLALCPDCRRRLAT
MEVTAGALLEAEKPVDADLSVDRSWQDMRARLTASGERSRESTVSRVEASPDATRRQR
DAILPEPLRSYLGQDLDGLKWKSLGRGAYHIPIKTRDGETSVRLLRIPAGKPVPEHSH
GGRELTLVLKGSFHDGQGRFARGDLEEADEQLEHQPIAEDGEDCICLAVTDAPLRFKS
RLVRLFQPILGI"
misc_feature 88909..89586
/locus_tag="Avi_0090"
/note="anti-sigma factor, putative, ChrR family; Region:
anti_sig_ChrR; TIGR02451"
/db_xref="CDD:131504"
misc_feature 88924..89016
/locus_tag="Avi_0090"
/note="Putative zinc-finger; Region: zf-HC2; cl15806"
/db_xref="CDD:210206"
misc_feature <89326..89517
/locus_tag="Avi_0090"
/note="Cupin domain; Region: Cupin_2; cl09118"
/db_xref="CDD:212615"
gene 89617..90018
/locus_tag="Avi_0091"
/db_xref="GeneID:7388274"
CDS 89617..90018
/locus_tag="Avi_0091"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548048.1"
/db_xref="GI:222147091"
/db_xref="GeneID:7388274"
/translation="MRSYAIAYCATAAVFFTLDFLWLSKIALGFYKSRIGDMMRDQPN
FTAAGLFYLFYIVGIVYFAVGPALQSGSLLTALVSGALLGLIAYGTYDMTNLATLKSW
SLTLSLVDMAWGTVLTATAAGIGYLITSRFV"
misc_feature 89617..90000
/locus_tag="Avi_0091"
/note="Predicted membrane protein (DUF2177); Region:
DUF2177; pfam09945"
/db_xref="CDD:204348"
gene 90102..90872
/gene="glpR"
/locus_tag="Avi_0092"
/db_xref="GeneID:7388275"
CDS 90102..90872
/gene="glpR"
/locus_tag="Avi_0092"
/codon_start=1
/transl_table=11
/product="transcriptional regulator DeoR family"
/protein_id="YP_002548049.1"
/db_xref="GI:222147092"
/db_xref="GeneID:7388275"
/translation="MFLSARQSDILDIAKAEGRVQVDDLAVRFSVTPQTIRKDLNDLC
ETRRLTRVHGGAIFPSGAENVRYEARRSMAAPEKQAIGRAAAELIPNNASLFINIGTT
TEAVGEALLDHKDLMVITNNINVANRLRVFPGIEVVIAGGVVRGSDGGIVGEAAVDFI
RQFKVDYAVIGASAIDPDGALLDYDYREVKVAQAIIANARHVILVADSSKFERAAPVR
IGHLSQVHTFITDVCDIEGLAAICREHDVRLIEAFRAA"
misc_feature 90102..90848
/gene="glpR"
/locus_tag="Avi_0092"
/note="DNA-binding transcriptional repressor GlpR;
Provisional; Region: PRK10906"
/db_xref="CDD:182827"
misc_feature 90117..90281
/gene="glpR"
/locus_tag="Avi_0092"
/note="DeoR-like helix-turn-helix domain; Region:
HTH_DeoR; pfam08220"
/db_xref="CDD:116806"
misc_feature 90315..90794
/gene="glpR"
/locus_tag="Avi_0092"
/note="DeoR C terminal sensor domain; Region: DeoRC;
pfam00455"
/db_xref="CDD:201239"
gene 90949..92499
/gene="glpD"
/locus_tag="Avi_0094"
/db_xref="GeneID:7388276"
CDS 90949..92499
/gene="glpD"
/locus_tag="Avi_0094"
/note="in Escherichia coli this homodimeric enzyme is
expressed under aerobic conditions; anaerobic expression
is repressed by the arcAB system; converts
sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy
acetone phosphate and ubiquinol-8; associates with the
cytoplasmic membrane"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate dehydrogenase"
/protein_id="YP_002548050.1"
/db_xref="GI:222147093"
/db_xref="GeneID:7388276"
/translation="MRTVMLHCERERNVSGDPVFDIFVIGGGINGCGIARDAVGRGYT
VALAEMNDFASGTSSGATKLIHGGLRYLEHYEFRLVREALMEREVLWAMAPHIIWPMR
FVLPFHKGGIRPAWLIRLGLFLYDHLGGRKLLPATKTLNMRKDKAGKPLKPLFTRAFE
YSDGWVDDARFVVLNARDAADRGATILSRNRVIGAHRDGDLWIIEVEDRASRARSTYK
ARMLVNAGGPWVDSVLSNAVGRNNVHNVRLVQGSHIVVKKKFDDPRAYFFQNPDNRII
FAIPYETDFTLIGTTDQDYQGDPKDVKISSAEISYLCDAASEYFAEPVRPEDIVWSYS
AVRPLYDDGASKAQEATRDYVLKLETPEKAAPLLNVFGGKLTTYRRLGEHALEKIGEA
IGVKGKPWTATSHLPGGDFPATGYLAEVERLKKVFPFLEDRCARRLVRCYGTFATTII
NGAKSLEGLGHYFGGTLYQAEVDWLIAREWAATAEDILWRRTKQGLFLSVEQAQVLED
YIEEARAA"
misc_feature 90997..92496
/gene="glpD"
/locus_tag="Avi_0094"
/note="glycerol-3-phosphate dehydrogenase; Reviewed;
Region: glpD; PRK12266"
/db_xref="CDD:183388"
misc_feature 91006..>91653
/gene="glpD"
/locus_tag="Avi_0094"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene 92657..93760
/locus_tag="Avi_0095"
/db_xref="GeneID:7388277"
CDS 92657..93760
/locus_tag="Avi_0095"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(sugar)"
/protein_id="YP_002548051.1"
/db_xref="GI:222147094"
/db_xref="GeneID:7388277"
/translation="MLELRNLSKVVAGDVHIHPVNLTLQRGSLNVLLGPTLSGKTSLM
RLMAGLDKPTSGSLLFDGKDVTGLRVQDRSVAMVYQQFINYPALSVYENIASPLRVRK
VDRATIDREVKKAAELLKLTPYLERTPLNLSGGQQQRTALARAIVKQASLVLLDEPLA
NLDYKLREELREELPKIFAELGAIFVYATTEPSEALLLGGHTATLSEGRVTQYGPTID
VYRRPADLKTARTFADPPLNTVQAIRREGHFMIGGIPVLTVPRHLAHVPEEPLTLGFH
PHHLSLAGASSSEGVAPLVARSMISEISGSESYIHLDYAGERWVMLEHGIHDIEPGRD
VQVHLDTRHLMAFDASGRALAEYLAGQLEAQGE"
misc_feature 92657..93706
/locus_tag="Avi_0095"
/note="ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism]; Region: MalK;
COG3839"
/db_xref="CDD:33631"
misc_feature 92660..93298
/locus_tag="Avi_0095"
/note="ABC Carbohydrate and Solute Transporters-like
subgroup. This family is comprised of proteins involved
in the transport of apparently unrelated solutes and
proteins specific for di- and oligosaccharides and
polyols. ABC transporters are a large family...; Region:
ABC_Carb_Solutes_like; cd03259"
/db_xref="CDD:73018"
misc_feature 92756..92779
/locus_tag="Avi_0095"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73018"
misc_feature order(92765..92770,92774..92782,92894..92896,93122..93127,
93224..93226)
/locus_tag="Avi_0095"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73018"
misc_feature 92885..92896
/locus_tag="Avi_0095"
/note="Q-loop/lid; other site"
/db_xref="CDD:73018"
misc_feature 93050..93079
/locus_tag="Avi_0095"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73018"
misc_feature 93110..93127
/locus_tag="Avi_0095"
/note="Walker B; other site"
/db_xref="CDD:73018"
misc_feature 93134..93145
/locus_tag="Avi_0095"
/note="D-loop; other site"
/db_xref="CDD:73018"
misc_feature 93212..93232
/locus_tag="Avi_0095"
/note="H-loop/switch region; other site"
/db_xref="CDD:73018"
gene 93764..94858
/locus_tag="Avi_0096"
/db_xref="GeneID:7388278"
CDS 93764..94858
/locus_tag="Avi_0096"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(sugar)"
/protein_id="YP_002548052.1"
/db_xref="GI:222147095"
/db_xref="GeneID:7388278"
/translation="MARISLDHIRHAYGPKGLANPLYALKEVHHEFDDGGAYALLGPS
GCGKTTLLNIMSGLLQPSDGRILFGDKDVTHLSTEARNIAQVFQFPVVYDTMTVYDNL
AFPLRNRRVPEVEVDARVRTILKMIDLEAWAKRKAQGLTADQKQKISLGRGLVRSDVN
AILFDEPLTVIDPHMKWMLRAQLKQLHREFAYTMVYVTHDQTEALTFADKVVVMYDGQ
IVQIGTPAELFDRPKHTFVGYFIGSPGMNVLAAGIDGDTAMIGGERVALPGRPVIPGE
ALTELGIRPEFIRLGREGMPVQISKVEDIGRQKIVRARFADQPISIVLREDADIPAEP
KVSFDPTAINIYANSWRVDFAGAGLGGVRP"
misc_feature 93764..94810
/locus_tag="Avi_0096"
/note="ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism]; Region: MalK;
COG3839"
/db_xref="CDD:33631"
misc_feature 93773..94432
/locus_tag="Avi_0096"
/note="ABC Carbohydrate and Solute Transporters-like
subgroup. This family is comprised of proteins involved
in the transport of apparently unrelated solutes and
proteins specific for di- and oligosaccharides and
polyols. ABC transporters are a large family...; Region:
ABC_Carb_Solutes_like; cd03259"
/db_xref="CDD:73018"
misc_feature 93887..93910
/locus_tag="Avi_0096"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73018"
misc_feature order(93896..93901,93905..93913,94025..94027,94256..94261,
94358..94360)
/locus_tag="Avi_0096"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73018"
misc_feature 94016..94027
/locus_tag="Avi_0096"
/note="Q-loop/lid; other site"
/db_xref="CDD:73018"
misc_feature 94181..94210
/locus_tag="Avi_0096"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73018"
misc_feature 94244..94261
/locus_tag="Avi_0096"
/note="Walker B; other site"
/db_xref="CDD:73018"
misc_feature 94268..94279
/locus_tag="Avi_0096"
/note="D-loop; other site"
/db_xref="CDD:73018"
misc_feature 94346..94366
/locus_tag="Avi_0096"
/note="H-loop/switch region; other site"
/db_xref="CDD:73018"
gene 94855..95742
/locus_tag="Avi_0097"
/db_xref="GeneID:7388279"
CDS 94855..95742
/locus_tag="Avi_0097"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002548053.1"
/db_xref="GI:222147096"
/db_xref="GeneID:7388279"
/translation="MNKTWNNKAWFLVLPVLLLVAFSAVIPLMTVVNYSVQDTFGNND
FFWAGSDWFTQTLQSERFWDALWRNLIFSMIILAIEVPLGILIALNMPKTGLGVPVCL
VLMALPLLIPWNVVGTIWQVFGRSDIGLLGYTLNAVGLDYNYVANPFDAWATIVVMDV
WHWTSLVVLLCYAGLVSIPDAYYQAARIDGASRWSVFRYIQLPKMKQVLLIAVLLRFM
DSFMIYTEPFVVTGGGPGNSTTFLSIDLVKMALGQFDLGPAAAMSIIYFLIILLLSWV
FYTVMTHSDAQSASAPKGD"
misc_feature 95050..95562
/locus_tag="Avi_0097"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(95098..95103,95110..95115,95128..95130,95155..95166,
95170..95199,95206..95211,95215..95217,95332..95337,
95344..95346,95350..95352,95359..95364,95368..95370,
95380..95385,95392..95394,95443..95445,95485..95490,
95497..95499,95518..95529,95536..95541)
/locus_tag="Avi_0097"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(95173..95217,95518..95535)
/locus_tag="Avi_0097"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(95215..95217,95317..95319,95536..95538)
/locus_tag="Avi_0097"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(95395..95433,95449..95454,95464..95466)
/locus_tag="Avi_0097"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 95833..96558
/locus_tag="Avi_0098"
/db_xref="GeneID:7388280"
CDS 95833..96558
/locus_tag="Avi_0098"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002548054.1"
/db_xref="GI:222147097"
/db_xref="GeneID:7388280"
/translation="MSFKSNQEILSSLTLYPHEPTLKNYITIFTDRSWYSGYINSIIY
VVQNMVISVACALPAAYAFSRYRFLGDKHLFFWLLTNRMAPPAVFALPFFQLYSAFDM
IDTHIAVALAHCLFNVPLAVWILEGFMSGIPKEIDETAYIDGYSFPRFFVKIFIPLIA
SGIGVAAFFCFMFSWVELLIARTLTTVDAKPIAAVMTRTVSASGVDWGLLAAAGVLTL
IPGAVVIYFVRNYIAKGFALGRV"
misc_feature 95833..96555
/locus_tag="Avi_0098"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 95944..96495
/locus_tag="Avi_0098"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(95992..95997,96004..96009,96022..96024,96052..96063,
96067..96096,96103..96108,96112..96114,96175..96180,
96184..96186,96190..96192,96199..96204,96208..96210,
96220..96225,96232..96234,96283..96285,96325..96330,
96337..96339,96358..96369,96376..96381,96415..96420,
96448..96453,96460..96465,96469..96474,96481..96486,
96493..96495)
/locus_tag="Avi_0098"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(96070..96114,96358..96375)
/locus_tag="Avi_0098"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(96112..96114,96157..96159,96376..96378,96409..96411,
96418..96420,96448..96450)
/locus_tag="Avi_0098"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(96235..96273,96289..96294,96304..96306)
/locus_tag="Avi_0098"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 96572..96853
/locus_tag="Avi_0099"
/db_xref="GeneID:7388281"
CDS 96572..96853
/locus_tag="Avi_0099"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548055.1"
/db_xref="GI:222147098"
/db_xref="GeneID:7388281"
/translation="MNLSWMAWTTPTALFFITILALLIALSVWEYVSPGGSPRVGILR
FETTRGDRLFVSLLGSAFIHLAWLGLSSLSLWWALGLSVIYAIGVFRTV"
misc_feature 96578..96850
/locus_tag="Avi_0099"
/note="Predicted small integral membrane protein
(DUF2160); Region: DUF2160; cl02294"
/db_xref="CDD:154844"
gene 96896..98620
/locus_tag="Avi_0100"
/db_xref="GeneID:7388282"
CDS 96896..98620
/locus_tag="Avi_0100"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548056.1"
/db_xref="GI:222147099"
/db_xref="GeneID:7388282"
/translation="MMRKHLMTTTAAMLLAMTGAAYAGMDEAKQFLDEEIKGESSLSR
ADQEKQMQWYVDAAKPFSGMEIHVVSESLTTHAYESKVLAPWFSKITGIKLTHDVIQE
GDVVEKIQTQMQTGQNLYDGWVNDSDFIGTHWRYGQVRNLTDWMTGEGKDVTDPMLDL
KDYIGLSFTTAPDGKLYQLPDQQFANLYWFRYDWFNDPKIKEEFKKEYGYELGVPVNW
SAYEDIAKFFTGREIGGKKVYGSMDYGKKDPSLGWRFTDAWLSMAGNGDKGLPNGKPV
DEWGIRVNDKDQPTGSCVDRGGDTNGAASVYAVTKYLEWLKKYTPPEAQGMTFSESGP
VPAQGNIAQQIFWYTAFTADMAKPGLPVVNDDGTPKWRVAPSPHGSYWHEGQKLGYQD
VGSWTLMKSTPTDRAKAAWLYAQFVTSKTVDVKKSQTGLTFIRQSSIMDKTFTDRAPK
LGGLVEFYRSPARVQWTPTGTNVPDYPKLAQLWWQNIGDAAAGAKTPQEAMDALCKAQ
DGILSRLERAKVQGEFGPKLNEPKDAAYWEKYAKDHGSLAPQPKLANEKEKPITINYD
ELVKSWQK"
misc_feature 97061..98437
/locus_tag="Avi_0100"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
misc_feature <97775..98155
/locus_tag="Avi_0100"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:201851"
gene complement(98774..99331)
/gene="cycM"
/locus_tag="Avi_0102"
/db_xref="GeneID:7388283"
CDS complement(98774..99331)
/gene="cycM"
/locus_tag="Avi_0102"
/codon_start=1
/transl_table=11
/product="cytochrome c"
/protein_id="YP_002548057.1"
/db_xref="GI:222147100"
/db_xref="GeneID:7388283"
/translation="MNSYMNMGAGALLGTIFVLMSVSIASEGIFHAPTPEKEGYAIVA
AEAPAAGGAEGAAPAAADKPIAELLASADVKAGEAIFKKCTACHSVDKGGANKVGPNL
WGVVDRPVASHEGFAYSAGMKDFSKGSSEHWTFENLNHFLTAPKKFVAGTAMGFAGIP
KEQDRANLLVYLHNQSDNPVALPTN"
misc_feature complement(98795..99142)
/gene="cycM"
/locus_tag="Avi_0102"
/note="Cytochrome c2 [Energy production and conversion];
Region: COG3474"
/db_xref="CDD:33277"
gene 99408..100238
/gene="kdsB"
/locus_tag="Avi_0103"
/db_xref="GeneID:7388284"
CDS 99408..100238
/gene="kdsB"
/locus_tag="Avi_0103"
/codon_start=1
/transl_table=11
/product="3-deoxy-D-manno-octulosonate
cytidylyltransferase"
/protein_id="YP_002548058.1"
/db_xref="GI:222147101"
/db_xref="GeneID:7388284"
/translation="MTVATRLCSAALRRFATYPHCFQRRIPMSDHTRFKTLVLIPARM
ASTRLPGKPLADIAGLPMIVQVAKRAAEANVGRIVVAVDHPDVFATVTAAGFEAVMTG
EQHQSGSDRIHEALLKVDPKGEAEIIINVQGDLPTIDPETIRAALRPLEDPQVDIATL
TVEIEDEAEKTNPNVVKVVGSPLSDNRLRALYFTRATAPHGKGPLYHHIGLYAYRRAA
LERFVALSPSVLEKRESLEQLRALEAGMRIDVEIVDTVPLGVDTAADLEKARAILAAK
"
misc_feature 99510..100223
/gene="kdsB"
/locus_tag="Avi_0103"
/note="CMP-KDO synthetase catalyzes the activation of KDO
which is an essential component of the lipopolysaccharide;
Region: CMP-KDO-Synthetase; cd02517"
/db_xref="CDD:133010"
misc_feature order(99528..99536,99648..99650,99729..99731,99801..99803,
99807..99809)
/gene="kdsB"
/locus_tag="Avi_0103"
/note="Ligand binding site; other site"
/db_xref="CDD:133010"
misc_feature order(99873..99875,99924..99926,99942..99944,99957..99962,
99978..99983,99987..100007,100017..100019,100092..100097,
100104..100112,100131..100142)
/gene="kdsB"
/locus_tag="Avi_0103"
/note="oligomer interface; other site"
/db_xref="CDD:133010"
gene 100306..101103
/gene="pheA"
/locus_tag="Avi_0105"
/db_xref="GeneID:7388285"
CDS 100306..101103
/gene="pheA"
/locus_tag="Avi_0105"
/codon_start=1
/transl_table=11
/product="prephenate dehydratase"
/protein_id="YP_002548059.1"
/db_xref="GI:222147102"
/db_xref="GeneID:7388285"
/translation="MACRDMFPDMEPLPCPTFEDAFTALENGEADLAMIPIENTLAGR
VADIHYLLPLSRLKIIGEYFMPIRFQLMVLPGVKAEEIRTVHSHIHALGQCRKIIRSH
GWKAVVAGDTAGAAKQVAELGDRSMAALAPRLAASLYGLDILAENVEDSENNITRFVV
LSRDEMALTRAAADESFITTFVFNVRNIPAALYKAMGGFATNGVNMTKLESYQIGGKF
IATQFYADIEGHPEDAPVKRALEELRFFSEKVHILGVYKAHAMRGKF"
misc_feature 100306..101094
/gene="pheA"
/locus_tag="Avi_0105"
/note="prephenate dehydratase; Provisional; Region:
PRK11899"
/db_xref="CDD:183367"
misc_feature 100306..100803
/gene="pheA"
/locus_tag="Avi_0105"
/note="Prephenate dehydratase; Region: PDT; pfam00800"
/db_xref="CDD:144409"
misc_feature 100840..101076
/gene="pheA"
/locus_tag="Avi_0105"
/note="C-terminal ACT domain of the bifunctional
chorismate mutase-prephenate dehydratase (CM-PDT) enzyme
and the prephenate dehydratase (PDT) enzyme; Region:
ACT_CM-PDT; cd04905"
/db_xref="CDD:153177"
misc_feature order(100873..100884,100933..100944)
/gene="pheA"
/locus_tag="Avi_0105"
/note="putative L-Phe binding site [chemical binding];
other site"
/db_xref="CDD:153177"
gene complement(101152..103122)
/locus_tag="Avi_0107"
/db_xref="GeneID:7388286"
CDS complement(101152..103122)
/locus_tag="Avi_0107"
/codon_start=1
/transl_table=11
/product="beta-glucosidase"
/protein_id="YP_002548060.1"
/db_xref="GI:222147103"
/db_xref="GeneID:7388286"
/translation="MKMFSLASCAILMASVAIAQNQPVVTARSAAILTVDAKTFKDLN
RNGRLDPYEDWRRSPAERASDLVSQMTLIEKAGLMMHGTAPALASGSEAGQGRGSGYD
LERIKPLINDAKVATYITRLSLPPEQLAAENNKLQEIAEASRLGIPLTISTDPRNHFQ
YVLGASAQSGGFSKWPESLGFGALDDAKLTRQFGDIARQEYLAVGIQQALSPQIDLAT
EPRWPRSTGTFGEDPQISRRMAEAYVAGFQNGTTGLKPGSVSAVAKHWVGYGAAPQGF
DGHNSYGRHVVFKAKDFEKHVTPFKGAFAAKVAGIMPTYSIVDGVKLDGKPLEPVAAG
YSKQLLTDLLRKRYKFDGVVVSDWLITNDCKDECLNGEKPGDTPIIRPDTFGMPWGVE
DLSREDRFAKAVNAGIDQFGGVANSDILVKAVEDKKVSEIRIDQSAKRLLIQKFEQGL
FENPYADPQKAKAIVGNADFVAEGEKAQARAMVVLQNKGKILPVKPGKKVYLLNVDAA
TAQKRGYQVVTKPEDADFALVRLMAPFERLHPNYFFGARHEEGDLSFKPGNPDYDAVT
AIAGKTPIIATVFLSRPSILTNLKDQTKALIGNFGASDEALFNVIEGKQKARGKLPFE
LPSSMQAVEAQAPSTPHDSKKPLYKIGYSQTY"
misc_feature complement(101797..102747)
/locus_tag="Avi_0107"
/note="Glycosyl hydrolase family 3 N terminal domain;
Region: Glyco_hydro_3; cl07971"
/db_xref="CDD:208801"
misc_feature complement(101572..102735)
/locus_tag="Avi_0107"
/note="Beta-glucosidase-related glycosidases [Carbohydrate
transport and metabolism]; Region: BglX; COG1472"
/db_xref="CDD:31661"
misc_feature complement(101155..101679)
/locus_tag="Avi_0107"
/note="Glycosyl hydrolase family 3 C-terminal domain;
Region: Glyco_hydro_3_C; pfam01915"
/db_xref="CDD:190157"
gene complement(103412..104377)
/locus_tag="Avi_0108"
/db_xref="GeneID:7388287"
CDS complement(103412..104377)
/locus_tag="Avi_0108"
/codon_start=1
/transl_table=11
/product="mutT/nudix family protein"
/protein_id="YP_002548061.1"
/db_xref="GI:222147104"
/db_xref="GeneID:7388287"
/translation="MTSISLFDIDTPHPEASALTAFSGNGLERYAEHRSEESLSEAFK
AEGMHVLAFAGNRLVFKHEGLVLDPLFAPYELTALRPDLDNAVLLGRRPSGEPRIAVP
VTISEEQLATGYKALTARELFRDPNIDAELVGEAAQGFSLLHWNSENRFCGTCGKPME
PRLGGYKRECPACGRMAFPRTDPVVIMMTVDEDNDRCLLGRGAHFPEGMYSCLAGFVE
PAETIENAVRRETYEEAAITIGRVRYHASQPWPMPHQLMIGCYAQALSFEISRDENEL
ADCRWFSRAELQAMIDLETETVKAPAPGTIAHRLMSDWLDWGKAG"
misc_feature complement(103430..104299)
/locus_tag="Avi_0108"
/note="NTP pyrophosphohydrolases containing a Zn-finger,
probably nucleic-acid-binding [DNA replication,
recombination, and repair]; Region: NPY1; COG2816"
/db_xref="CDD:32645"
misc_feature complement(103943..104233)
/locus_tag="Avi_0108"
/note="NADH pyrophosphatase-like rudimentary NUDIX domain;
Region: NUDIX-like; pfam09296"
/db_xref="CDD:204191"
misc_feature complement(103844..103933)
/locus_tag="Avi_0108"
/note="NADH pyrophosphatase zinc ribbon domain; Region:
zf-NADH-PPase; pfam09297"
/db_xref="CDD:204192"
misc_feature complement(103430..103831)
/locus_tag="Avi_0108"
/note="NADH pyrophosphatase, a member of the Nudix
hydrolase superfamily, catalyzes the cleavage of NADH into
reduced nicotinamide mononucleotide (NMNH) and AMP. Like
other members of the Nudix family, it requires a divalent
cation, such as Mg2+ or Mn2+, for...; Region:
NADH_pyrophosphatase; cd03429"
/db_xref="CDD:72887"
misc_feature complement(order(103607..103609,103613..103615,
103619..103621,103628..103630,103730..103738,
103826..103828))
/locus_tag="Avi_0108"
/note="putative NADH binding site [chemical binding];
other site"
/db_xref="CDD:72887"
misc_feature complement(order(103607..103609,103613..103615,
103619..103621,103628..103630,103676..103681,
103688..103690,103724..103726,103730..103735))
/locus_tag="Avi_0108"
/note="putative active site [active]"
/db_xref="CDD:72887"
misc_feature complement(103667..103735)
/locus_tag="Avi_0108"
/note="nudix motif; other site"
/db_xref="CDD:72887"
misc_feature complement(order(103553..103555,103676..103681,
103688..103690))
/locus_tag="Avi_0108"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:72887"
gene complement(104374..104817)
/locus_tag="Avi_0109"
/db_xref="GeneID:7388288"
CDS complement(104374..104817)
/locus_tag="Avi_0109"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548062.1"
/db_xref="GI:222147105"
/db_xref="GeneID:7388288"
/translation="MRKNKIALRRPILELFRLDERLARDSQSILQLPLSDLRLSRDSR
WPWLILVPRRNDVAEIFELSKDDQIQLLHEQVHVGSALKTATGATKINIAAIGNVVRQ
LHVHVVARFETDPNWPGPIWGHGVAEPYSDTALATMTTTILDALT"
misc_feature complement(104410..>104685)
/locus_tag="Avi_0109"
/note="Diadenosine tetraphosphate (Ap4A) hydrolase and
other HIT family hydrolases [Nucleotide transport and
metabolism / Carbohydrate transport and metabolism /
General function prediction only]; Region: Hit; COG0537"
/db_xref="CDD:30883"
misc_feature complement(order(104500..104502,104506..104508,
104518..104520,104671..104673))
/locus_tag="Avi_0109"
/note="nucleotide binding site/active site [active]"
/db_xref="CDD:29586"
misc_feature complement(order(104494..104502,104506..104508,
104512..104514))
/locus_tag="Avi_0109"
/note="HIT family signature motif; other site"
/db_xref="CDD:29586"
misc_feature complement(104506..104508)
/locus_tag="Avi_0109"
/note="catalytic residue [active]"
/db_xref="CDD:29586"
gene 104917..105014
/locus_tag="Avi_4516"
/db_xref="GeneID:7388289"
ncRNA 104917..105014
/locus_tag="Avi_4516"
/ncRNA_class="SRP_RNA"
/product="SRP RNA; RNA component of signal recognition
particle"
/db_xref="GeneID:7388289"
gene 105085..106980
/gene="dnaX"
/locus_tag="Avi_0110"
/db_xref="GeneID:7387990"
CDS 105085..106980
/gene="dnaX"
/locus_tag="Avi_0110"
/note="catalyzes the DNA-template-directed extension of
the 3'-end of a DNA strand; the tau chain serves as a
scaffold to help in the dimerizaton of the alpha,epsilon
and theta core complex; the gamma chain seems to interact
with the delta and delta' subunits to transfer the beta
subunit on the DNA"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunits gamma and tau"
/protein_id="YP_002548063.1"
/db_xref="GI:222147106"
/db_xref="GeneID:7387990"
/translation="MSDLEPTAQAAPASGQASGAYRVLARKYRPKDFTDLMVGQEPMV
RTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTTEIDRPTIDLKIPGEHC
QAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTAAFN
GLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRRISAGDLVGLFSTILSKEN
IEAEDEALAMIARAAEGSARDGLSLLDQAIAHGAGRVEADAVRSMLGLADRARVVDLF
GHIVLGDVAAALSEFNSQYEAGASPSVVLTDLADFTHLVTRLKYVPNGANDPSLSEVE
RVRGADYAESVAVTTLSRIWQMLLKGIPEVENASRQAGAAEMVLIRLAHAAHLPSPEE
AARRLLDMAQDGGGAPQGTSPRGGNGGGASASYGGQAVARASSDPAPRALGQTQPTAH
LQVVPKASPSPDIAARPETKPEIQPDVPEPKVPVRSLDDIVHLCTANRDPKLKALTRA
YVRLVKLENGRLEINLPPEAPKSLVGDLQKRLEEWTDIRWMVILSREPGEKTLAEQEK
SDHEARMTDAAADPDVMAILSRFPGAKITDVRIRTVTEEEDEALPPPAAAESAEGDIL
PGDDIEF"
misc_feature 105145..106968
/gene="dnaX"
/locus_tag="Avi_0110"
/note="DNA polymerase III subunits gamma and tau;
Validated; Region: PRK09111"
/db_xref="CDD:181656"
misc_feature 105196..105669
/gene="dnaX"
/locus_tag="Avi_0110"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 105274..105297
/gene="dnaX"
/locus_tag="Avi_0110"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(105277..105300,105529..105531,105622..105624)
/gene="dnaX"
/locus_tag="Avi_0110"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 105517..105534
/gene="dnaX"
/locus_tag="Avi_0110"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 105658..105660
/gene="dnaX"
/locus_tag="Avi_0110"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 105847..106275
/gene="dnaX"
/locus_tag="Avi_0110"
/note="DNA polymerase III subunits gamma and tau domain
III; Region: DNA_pol3_gamma3; pfam12169"
/db_xref="CDD:152604"
misc_feature 106528..106878
/gene="dnaX"
/locus_tag="Avi_0110"
/note="DNA polymerase III gamma and tau subunits C
terminal; Region: DUF3646; pfam12362"
/db_xref="CDD:152797"
gene 107080..107403
/locus_tag="Avi_0111"
/db_xref="GeneID:7388290"
CDS 107080..107403
/locus_tag="Avi_0111"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548064.1"
/db_xref="GI:222147107"
/db_xref="GeneID:7388290"
/translation="MRDIMGMMGKVKEMQAKMEKMQEEIASLQVEGKSGGGLVTVTMT
GKGELKGLKIDPSLFKEDDVEILEDLIVAAHKDAKDKAEAIAAEKTKDMTAGLPIPPG
FKLPF"
misc_feature 107080..107388
/locus_tag="Avi_0111"
/note="hypothetical protein; Validated; Region: PRK00153"
/db_xref="CDD:178904"
gene complement(107440..107763)
/locus_tag="Avi_0112"
/db_xref="GeneID:7388291"
CDS complement(107440..107763)
/locus_tag="Avi_0112"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548065.1"
/db_xref="GI:222147108"
/db_xref="GeneID:7388291"
/translation="MTTEPETDKPKITILYCTQCNWLLRAAWMAQELLQTFGDSLGEV
GLIPGTGGNFEIRVNGALIWERKRDGGFPGPKELKQRVRDVIEPGKDLGHVDRTNGKT
EKGEE"
misc_feature complement(107470..107748)
/locus_tag="Avi_0112"
/note="Uncharacterized protein conserved in bacteria
[Posttranslational modification, protein turnover,
chaperones]; Region: COG3526"
/db_xref="CDD:33329"
gene 107934..108122
/locus_tag="Avi_0113"
/db_xref="GeneID:7388292"
CDS 107934..108122
/locus_tag="Avi_0113"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548066.1"
/db_xref="GI:222147109"
/db_xref="GeneID:7388292"
/translation="MYKFEVYKDKAGEFRFRFKASNGETMFSSEGYKAKASVMSAIAS
IQKNAPEAKIEDQTTATV"
misc_feature 107934..108107
/locus_tag="Avi_0113"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3422"
/db_xref="CDD:33228"
gene complement(108172..108696)
/locus_tag="Avi_0114"
/db_xref="GeneID:7388293"
CDS complement(108172..108696)
/locus_tag="Avi_0114"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_002548067.1"
/db_xref="GI:222147110"
/db_xref="GeneID:7388293"
/translation="MTAIRLLNASDAREAIPDLCEILSDCVNGGASVGFMLPFDLETA
RPFWEGVANAVEAGDSLLLVAEHQGTVVGTVQIGLKQPPNQPHRADLKKLLVHRSARG
LGLARQLMEASQHQAARAGKTLIVLDTATGEPAEAIYDKLGWKRAGVVPDYALFPDGR
FCDTTIFYKRVGSL"
misc_feature complement(108265..108651)
/locus_tag="Avi_0114"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_10; pfam13673"
/db_xref="CDD:205850"
misc_feature complement(108313..108513)
/locus_tag="Avi_0114"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(108376..108381,108409..108417))
/locus_tag="Avi_0114"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(108713..109297)
/locus_tag="Avi_0115"
/db_xref="GeneID:7388294"
CDS complement(108713..109297)
/locus_tag="Avi_0115"
/codon_start=1
/transl_table=11
/product="transcriptional regulatory protein"
/protein_id="YP_002548068.1"
/db_xref="GI:222147111"
/db_xref="GeneID:7388294"
/translation="MENTPDTLTLAIAARLKAIRTARGLTLDQLADLSGVSRAMISRI
ERAEASPTATLLARLCSALGQSLSIFFAEPNHGSPLMRHADQPVWQDPETGYLRRAVS
APGTGARVDVVEVELPPGARVQFSAQPASPHPSSRQWQHVWLFEGTIELTVGDTVHRL
EPGDCLYMDIGEVHAFHNPTDRPARYGVIIDLGR"
misc_feature complement(108743..109273)
/locus_tag="Avi_0115"
/note="DNA-binding transcriptional repressor PuuR;
Provisional; Region: PRK09943"
/db_xref="CDD:182158"
misc_feature complement(109088..109261)
/locus_tag="Avi_0115"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature complement(order(109160..109162,109235..109237,
109247..109249))
/locus_tag="Avi_0115"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature complement(order(109163..109165,109238..109240))
/locus_tag="Avi_0115"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature complement(order(109157..109162,109172..109174,
109181..109183,109214..109219))
/locus_tag="Avi_0115"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
misc_feature complement(108740..108961)
/locus_tag="Avi_0115"
/note="Cupin domain; Region: Cupin_2; pfam07883"
/db_xref="CDD:203791"
gene 109515..110468
/gene="ftsZ1"
/locus_tag="Avi_0116"
/db_xref="GeneID:7388295"
CDS 109515..110468
/gene="ftsZ1"
/locus_tag="Avi_0116"
/note="GTPase; similar structure to tubulin; forms
ring-shaped polymers at the site of cell division; other
proteins such as FtsA, ZipA, and ZapA, interact with and
regulate FtsZ function"
/codon_start=1
/transl_table=11
/product="cell division protein FtsZ"
/protein_id="YP_002548069.1"
/db_xref="GI:222147112"
/db_xref="GeneID:7388295"
/translation="MRPKITVIGVGGGGGNAVNNMINEGLQGVDFIAANTDAQALTMS
RAPRLIQLGAEMTEGLGAGSVPETGRMAAEESLHEVMDHLAGTHMCFVTAGMGGGTGT
GAAPVIARAAREAGILTVGVVTKPFSFEGRRRMQAAEEGIERLREAADTVIVIPNQNL
FRIADAKTTFADAFVIADKVLFSGVSCITDLIVKEGLINLDFADVKSVMKGMGRAMMG
TGEATGDSRAMKAAEAAIANPLLDEVSMRGARGVLISISGGMDMTLFEVDEAATRIRD
EVYDEADIVVGAIFDKELDGTFRVSVVATGLGEEGDHQQAR"
misc_feature 109518..110465
/gene="ftsZ1"
/locus_tag="Avi_0116"
/note="cell division protein FtsZ; Validated; Region:
PRK09330"
/db_xref="CDD:181781"
misc_feature 109521..110432
/gene="ftsZ1"
/locus_tag="Avi_0116"
/note="FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those formed
by tubulin. FtsZ forms a ring-shaped septum at...; Region:
FtsZ_type1; cd02201"
/db_xref="CDD:100021"
misc_feature order(109545..109553,109560..109562,109632..109634,
109797..109817,109890..109895,109914..109916,
109983..109985,110034..110036,110043..110048,
110055..110057)
/gene="ftsZ1"
/locus_tag="Avi_0116"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:100021"
misc_feature order(110106..110111,110115..110117,110295..110306,
110313..110315)
/gene="ftsZ1"
/locus_tag="Avi_0116"
/note="SulA interaction site; other site"
/db_xref="CDD:100021"
gene 110502..112379
/gene="lepA"
/locus_tag="Avi_0118"
/db_xref="GeneID:7388296"
CDS 110502..112379
/gene="lepA"
/locus_tag="Avi_0118"
/note="binds to the ribosome on the universally-conserved
alpha-sarcin loop"
/codon_start=1
/transl_table=11
/product="GTP-binding protein LepA"
/protein_id="YP_002548070.1"
/db_xref="GI:222147113"
/db_xref="GeneID:7388296"
/translation="MPRISALRHAGALLYAQAMSTQNRTPLDHIRNFSIVAHIDHGKS
TLADRLIQNTGGLAEREMSEQVLDSMDIERERGITIKAQTVRLHYKANNGETYVLNLI
DTPGHVDFAYEVSRSLSACEGSLLVVDASQGVEAQTLANVYQAIDNNHEIVTVLNKID
LPAAEPDRIKEQIEEVIGIDASEAVLISAKTGLGIPDVLEAIVHKLPAPKSALGDKGP
LKALLVDSWYDTYLGVMVLVRVIDGVLTKGQTIRMMGTDAKYQVERVGVLTPKMVAMD
SLGPGEIGFFTGSIKEVADTRVGDTITEDKRPTETMLPGFKPAQPVVFCGLFPVDAAD
FEDLRAAMGKLRLNDASFSFEMESSAALGFGFRCGFLGLLHLEIIQERLEREFDLDLI
ATAPSVVYKLFMTDGSERELHNPADMPDVVKISEIHEPWIKATILTPDDYLGGILKLC
QDRRGIQTELTYVGKRAMLTYELPLNEVVFDFYDRLKSISKGYASFDYHLDGHKEGNL
VKMSILVNGEPVDALSMMVHRMAAEKRGRDMCEKLKDLIPKHMFKIPIQAAIGSNVIA
RETISALRKDVTAKCYGGDASRKRKLLDKQKAGKKRMRQFGKVEIPQEAFIAALKMSD
E"
misc_feature 110574..112376
/gene="lepA"
/locus_tag="Avi_0118"
/note="GTP-binding protein LepA; Provisional; Region:
PRK05433"
/db_xref="CDD:180078"
misc_feature 110592..111128
/gene="lepA"
/locus_tag="Avi_0118"
/note="LepA also known as Elongation Factor 4 (EF4);
Region: LepA; cd01890"
/db_xref="CDD:206677"
misc_feature 110610..110633
/gene="lepA"
/locus_tag="Avi_0118"
/note="G1 box; other site"
/db_xref="CDD:206677"
misc_feature order(110613..110615,110619..110621,110631..110636,
110643..110645,110652..110657,110748..110753,
110820..110825,110892..110897,111003..111005,
111015..111017)
/gene="lepA"
/locus_tag="Avi_0118"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206677"
misc_feature order(110619..110636,110970..110975,110979..110981,
111063..111071)
/gene="lepA"
/locus_tag="Avi_0118"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206677"
misc_feature 110715..110750
/gene="lepA"
/locus_tag="Avi_0118"
/note="Switch I region; other site"
/db_xref="CDD:206677"
misc_feature 110736..110738
/gene="lepA"
/locus_tag="Avi_0118"
/note="G2 box; other site"
/db_xref="CDD:206677"
misc_feature 110808..110819
/gene="lepA"
/locus_tag="Avi_0118"
/note="G3 box; other site"
/db_xref="CDD:206677"
misc_feature 110814..110870
/gene="lepA"
/locus_tag="Avi_0118"
/note="Switch II region; other site"
/db_xref="CDD:206677"
misc_feature 110970..110981
/gene="lepA"
/locus_tag="Avi_0118"
/note="G4 box; other site"
/db_xref="CDD:206677"
misc_feature 111063..111071
/gene="lepA"
/locus_tag="Avi_0118"
/note="G5 box; other site"
/db_xref="CDD:206677"
misc_feature 111156..111410
/gene="lepA"
/locus_tag="Avi_0118"
/note="lepA_II: This subfamily represents the domain II of
LepA, a GTP-binding protein localized in the cytoplasmic
membrane. The N-terminal domain of LepA shares regions of
homology to translation factors. In terms of interaction
with the ribosome, EF-G, EF-Tu...; Region: lepA_II;
cd03699"
/db_xref="CDD:58090"
misc_feature 111786..112022
/gene="lepA"
/locus_tag="Avi_0118"
/note="lepA_C: This family represents the C-terminal
region of LepA, a GTP-binding protein localized in the
cytoplasmic membrane. LepA is ubiquitous in Bacteria and
Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is
missing from Archaea. LepA exhibits...; Region: lepA_C;
cd03709"
/db_xref="CDD:58062"
misc_feature 112044..112367
/gene="lepA"
/locus_tag="Avi_0118"
/note="GTP-binding protein LepA C-terminus; Region:
LepA_C; pfam06421"
/db_xref="CDD:203441"
gene complement(112465..113091)
/gene="rnd"
/locus_tag="Avi_0120"
/db_xref="GeneID:7388297"
CDS complement(112465..113091)
/gene="rnd"
/locus_tag="Avi_0120"
/codon_start=1
/transl_table=11
/product="ribonuclease D"
/protein_id="YP_002548071.1"
/db_xref="GI:222147114"
/db_xref="GeneID:7388297"
/translation="MASTIRYHEGDISSEDAARYTRAIAIDTETLGLIPRRDRLCVVQ
LSPGDGTADVIRIAPGQRQAPNLTALLEDPTREKIFHYGRFDIAVLFHTFGVTTTPVF
CTKIASRLSRTYTDRHGLKDNLKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLY
LHALRDKLTARLVRDGRMDHATACFEFLPTRAKLDLLGWEETDIFAHS"
misc_feature complement(<112480..113070)
/gene="rnd"
/locus_tag="Avi_0120"
/note="Ribonuclease D [Translation, ribosomal structure
and biogenesis]; Region: Rnd; COG0349"
/db_xref="CDD:30697"
misc_feature complement(112522..113031)
/gene="rnd"
/locus_tag="Avi_0120"
/note="DEDDy 3'-5' exonuclease domain of Ribonuclease D
and similar proteins; Region: RNaseD_exo; cd06142"
/db_xref="CDD:176654"
misc_feature complement(order(112621..112623,112633..112635,
112732..112737,112834..112842,112846..112851,
113002..113013))
/gene="rnd"
/locus_tag="Avi_0120"
/note="putative active site [active]"
/db_xref="CDD:176654"
misc_feature complement(order(112621..112623,112633..112635,
112834..112836,113005..113007,113011..113013))
/gene="rnd"
/locus_tag="Avi_0120"
/note="catalytic site [active]"
/db_xref="CDD:176654"
misc_feature complement(order(112621..112623,112633..112635,
112732..112737,112837..112842,112846..112851,
113002..113010))
/gene="rnd"
/locus_tag="Avi_0120"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:176654"
gene complement(113190..114716)
/locus_tag="Avi_0122"
/db_xref="GeneID:7388298"
CDS complement(113190..114716)
/locus_tag="Avi_0122"
/codon_start=1
/transl_table=11
/product="sulfatase"
/protein_id="YP_002548072.1"
/db_xref="GI:222147115"
/db_xref="GeneID:7388298"
/translation="MQKKPNILLITADQWRGDCLSAVGHPVVQTPNVDRLAAEGLLFH
RHFAAAAPCSPARAAIYTGLYQMNNRVCRNGSPLDARFDTVALAARRAGYDPTLFGYT
DVSLDPRHLPPADPHLTSYEGVLPGFTVGQLLLEDDRQWLSWLKTRRGGVRPGRELHQ
TGQERPVQPNQEPPAYSAEETPTAFLAEAFLNWREEQTRPWFAHISFLRPHPPFCVPK
PYNRMFTPGNGPKPVRHPTLEAEMAVHPLAELMLPQLPQSSFIAGAEGRVCDWSSEQI
DVIRATYYGMIAEVDAQFGRIVDALKDSGTWDDTIIVFTSDHAEMLGDHWMLGKGGAY
DGSYHIPLVIRDPANTSTHGQVVEAFTSAADLMPTLLDRMGVSPLNHQDGGSLLPFLG
GTQPDNWRDHAFWEFDFRDVVTNSTENALGLKSSQCNLAVIRDEKFKYVHFAGLPPLL
FDLQADPGELTNLAEDPAYGAIRLHYAEKLLSLRAEHLDQTLAYTELCDEGPVSNPKL
"
misc_feature complement(113250..114716)
/locus_tag="Avi_0122"
/note="Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism]; Region: AslA; COG3119"
/db_xref="CDD:32933"
misc_feature complement(113256..114713)
/locus_tag="Avi_0122"
/note="Sulfatase; Region: Sulfatase; cl10460"
/db_xref="CDD:213119"
gene complement(114968..115156)
/locus_tag="Avi_0125"
/db_xref="GeneID:7388299"
CDS complement(114968..115156)
/locus_tag="Avi_0125"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548073.1"
/db_xref="GI:222147116"
/db_xref="GeneID:7388299"
/translation="MGGGVRRFDDFNIEDFPGMNIVNTALQQCIQRIAKERKYRRFAK
SIKKRRPFTLDRRSSADE"
gene 115395..116840
/gene="noeK"
/locus_tag="Avi_0126"
/db_xref="GeneID:7388300"
CDS 115395..116840
/gene="noeK"
/locus_tag="Avi_0126"
/codon_start=1
/transl_table=11
/product="phosphomannomutase"
/protein_id="YP_002548074.1"
/db_xref="GI:222147117"
/db_xref="GeneID:7388300"
/translation="MTVRLDPMAVKFGTSGLRGLSLDLVGSVSALHATAFARMLLAKG
YAKQGATVLIGQDFRPSSPEIAATCMGALQREGLVPVDCGAIPTPALAFYGSKIGAAS
LMVTGSHIPADRNGIKFYRPDGEIDKADEEAITALAAELAADEAANRVEHGTGEDRYA
IAVDLFLKRNMAVLPPAAFKGMKIGVYQHSSVGRDMLVTLLEGYGASVLPLGRSEIFV
PVDTEAVSPETIGKLSAWASEHGLDAIVSTDGDADRPLVADEKGASLRGDLLGLITAN
LLGAKVIATPVTSNSGIEAASGFKVLRTRVGSPYVISAMNAALSAGESGVIGFEANGG
VMLASDFTVHDGGLAALPTRDCVMPILAALYAAASTGQTLSAVVSDYRLPIALSDRLE
HYALDKSSALMAFLRVSDENLNTFLAPIGTVRETSDIDGLRVTLSDNRVIHFRPSGNA
PEMRCYVEASDRASAASLLAQGLALLAKWPD"
misc_feature 115413..116780
/gene="noeK"
/locus_tag="Avi_0126"
/note="Phosphomannomutase [Carbohydrate transport and
metabolism]; Region: {ManB}; COG1109"
/db_xref="CDD:31306"
misc_feature 115425..116777
/gene="noeK"
/locus_tag="Avi_0126"
/note="ManB is a bacterial phosphomannomutase (PMM) that
catalyzes the conversion of mannose 6-phosphate to
mannose-1-phosphate in the second of three steps in the
GDP-mannose pathway, in which GDP-D-mannose is synthesized
from fructose-6-phosphate. In...; Region: ManB; cd03088"
/db_xref="CDD:100090"
misc_feature order(115431..115433,115437..115439,115446..115448,
115716..115724,115746..115748,116139..116141,
116145..116147,116151..116156,116256..116258,
116310..116318,116382..116384,116388..116390,
116394..116396,116727..116729,116733..116741,
116754..116756)
/gene="noeK"
/locus_tag="Avi_0126"
/note="active site"
/db_xref="CDD:100090"
misc_feature order(115437..115439,115716..115718,116154..116156,
116256..116258,116310..116312,116316..116318,
116382..116384,116388..116390,116394..116396,
116727..116729,116733..116741,116754..116756)
/gene="noeK"
/locus_tag="Avi_0126"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100090"
misc_feature order(115716..115718,116139..116141,116145..116147,
116151..116153)
/gene="noeK"
/locus_tag="Avi_0126"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100090"
gene 117038..117499
/locus_tag="Avi_0127"
/db_xref="GeneID:7388301"
CDS 117038..117499
/locus_tag="Avi_0127"
/codon_start=1
/transl_table=11
/product="Acyl-Coa thioester hydrolase"
/protein_id="YP_002548075.1"
/db_xref="GI:222147118"
/db_xref="GeneID:7388301"
/translation="MVVLMTPDMANFSGKVHGGALLNILDRVAYSCASRFSQQYAVTL
SVDQVVFRQPIHVGELVTFRASVNYAGRTSMEIGIRVEAEEIRTGERRHTNSCYFTMV
AVDAEGKPTAVPSFCPETPAKIRREKAARERRALRQEFEHRFKQVKLSGQD"
misc_feature 117038..117379
/locus_tag="Avi_0127"
/note="Brown fat-inducible thioesterase (BFIT). Brain
acyl-CoA hydrolase (BACH). These enzymes deacylate
long-chain fatty acids by hydrolyzing acyl-CoA thioesters
to free fatty acids and CoA-SH. Eukaryotic members of this
family are expressed in brain, testis; Region: BFIT_BACH;
cd03442"
/db_xref="CDD:48037"
gene 117612..118559
/locus_tag="Avi_0128"
/db_xref="GeneID:7388302"
CDS 117612..118559
/locus_tag="Avi_0128"
/codon_start=1
/transl_table=11
/product="permease"
/protein_id="YP_002548076.1"
/db_xref="GI:222147119"
/db_xref="GeneID:7388302"
/translation="MTEITLNVLPIFLLIFSGWALVRSRFLNVDIGDALSEFVFKVAV
PVLLLHTITQADFQGASPFRLWIAYFAGVGVTWTIGHLVATRVFGRDQRIGVLAGVSS
AFANNVFIGLPLVSRMLGNDGVVALSILLAVHLPLMMVIGTVLMEHAERRESGVQLRG
MLAVLRQVGRNLVTNPLVIGLAIGLMVHVIGLPIPATIETVLSQISAMAGPAALISLG
MALTKYRVTGNVGIASVTSALKLVLMPASVWMACHLLHLPHEWTMALVLTSSVPTGVN
AWLIANRFGVGHALAASTITITTALGVFSVTFWAWLLGA"
misc_feature 117612..118553
/locus_tag="Avi_0128"
/note="Predicted permeases [General function prediction
only]; Region: COG0679"
/db_xref="CDD:31023"
gene complement(118608..120830)
/locus_tag="Avi_0130"
/db_xref="GeneID:7388303"
CDS complement(118608..120830)
/locus_tag="Avi_0130"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548077.1"
/db_xref="GI:222147120"
/db_xref="GeneID:7388303"
/translation="MAGPWLARSFCKKGYAMLPPVQALSRTAPNFHDSATEAALSDTA
MSGLTSDSMIRVDREGGSAIAGRINNLLLNSRESVQTDLAEIADLVGQSIGLKRDPGE
TDAAFAQRFATALANLDDGQRARLQTQLTQALKGLQIEVLLRVLQNTDGPEAALLSAY
MEIKRNNSGDLKALNVVSSYSQNGASPSNPPPPQSAGAPPASGQTASGQTAAPQTLNP
ATGQQVPAARLSEQSPGPVAGQPVTAALAAQSAAVSTAQPRAEQAAVVTQTAPIVSEP
EDVTTNRTPSTPVLDGTQAEETPAPRSLSAQAPANPEVAGRQTPLQAIRPEALSAAMA
LVTNETATTGAAPATDNRLIAGNMVESETVMTRMDDLPEETSTGLAAKAATETGLKAL
AFDRNGQTGTSGMTGMPGTTGTPAAVAMGNSAVPPLATGLAQTAREAAMDGLATQATN
RAYGAFTTPAPLQDNHQDPILPRSTDGDGIDTMVATVLSLKGWMDVTGASLHPPTMPE
EDSDTDLLRQMFFQTEDMQENEQNDLHPAINADARANQATLLEINQRRLSQMQAGQMQ
ANSSANQTPAGEAQAVLVSVRQEEITREQAILSLAGAQAIVHASVLHVPPFVPFPVVS
YLAVQDEPGRGKTETVDAIEALGDDDAHQDNNGQHQRDGSAEDEETAEEDSGSAAETL
SESQSYVLSDDVTLETADHTDVLELETEHYTAPTLALAAPQEDALPAEALYWRIADLA
"
gene 121171..122589
/locus_tag="Avi_0131"
/db_xref="GeneID:7388304"
CDS 121171..122589
/locus_tag="Avi_0131"
/codon_start=1
/transl_table=11
/product="putative nicotinate phosphoribosyltransferase"
/protein_id="YP_002548078.1"
/db_xref="GI:222147121"
/db_xref="GeneID:7388304"
/translation="MPVSLMSRINPILNTDSYKLGHFLQYPPGTRAVSGYVTTRGASL
RPEVVFFGLQMFLKEYLSQPITQADIDEAQELAALHGQPFDQAGWHYILSAHGGFLPL
RIEALPEGSFLHRGVPMVQVVNTDPACFWLPSYIETALLRAVWYPSTVASSLRHVKQT
LKPFLDKSCDDPSDKIGSRLFEYGARGAASLEQAGLGGVANLLHFDHTDTLEAVLYAR
RYYGAAMAGLSIPASEHTTMIAWGQDQEVQSFANMIDRFGDYPAYSVVSDSYDIHNAV
SEIWGKTLQQKVRSKPGRLIVRPDSGDPIDVPVQTVAQLAYQFGTRLNAKGYKVLDDK
VRVLQADGVSLRDITMILGRLEAMGFSAENISFGIGASQLQKVSRSTYSFTMKCSAIM
DGQERWRPISRRPVTMQERMPEPGRRAVIVEGDEFASIALEDLGRRTNHLQPVWENGR
LLKEWSFDEIKAKARTPHRMDM"
misc_feature 121186..122574
/locus_tag="Avi_0131"
/note="putative nicotinate phosphoribosyltransferase;
Provisional; Region: PRK09198"
/db_xref="CDD:181693"
misc_feature 121204..122391
/locus_tag="Avi_0131"
/note="pre-B-cell colony-enhancing factor (PBEF)-like. The
mammalian members of this group of nicotinate
phosphoribosyltransferases (NAPRTases) were originally
identified as genes whose expression is upregulated upon
activation in lymphoid cells. In general; Region:
PBEF_like; cd01569"
/db_xref="CDD:29616"
misc_feature order(121723..121731,121798..121803,122068..122070,
122185..122190,122272..122274,122278..122283,
122290..122292)
/locus_tag="Avi_0131"
/note="active site"
/db_xref="CDD:29616"
gene complement(122643..123035)
/locus_tag="Avi_0132"
/db_xref="GeneID:7388305"
CDS complement(122643..123035)
/locus_tag="Avi_0132"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548079.1"
/db_xref="GI:222147122"
/db_xref="GeneID:7388305"
/translation="MRLTCVTMMDTASIARDGVLLSSAPSAQTYPVERTVRLGAAHDD
SQQIGFLFSTPQRQLPREEIPPLSAEMIEEIAEIKADDVKEEERLPANWLDAMSSSEE
DGSPVIERPSGFLADDNGLYRMFLPDTV"
gene 123358..123717
/locus_tag="Avi_0134"
/db_xref="GeneID:7388306"
CDS 123358..123717
/locus_tag="Avi_0134"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548080.1"
/db_xref="GI:222147123"
/db_xref="GeneID:7388306"
/translation="MTITLYGIKNCDTMKKARTWLETAGIDYAFHDYKAKGIDRASLQ
AWSAKLGWEVLLNRAGTTFKKLPDEAKIDMNEEKALDLMLAQPSMIKRPVLDKDGTLT
VGFKPEQYQAVFAGTGF"
misc_feature 123364..123678
/locus_tag="Avi_0134"
/note="Arsenate Reductase (ArsC) family, Yffb subfamily;
Yffb is an uncharacterized bacterial protein encoded by
the yffb gene, related to the thioredoxin-fold arsenic
reductases, ArsC. The structure of Yffb and the
conservation of the catalytic cysteine...; Region:
ArsC_Yffb; cd03035"
/db_xref="CDD:48584"
misc_feature 123373..123693
/locus_tag="Avi_0134"
/note="ArsC family; Region: ArsC; pfam03960"
/db_xref="CDD:202832"
misc_feature order(123388..123390,123526..123528,123631..123633,
123670..123672)
/locus_tag="Avi_0134"
/note="putative catalytic residues [active]"
/db_xref="CDD:48584"
gene 123766..124239
/locus_tag="Avi_0136"
/db_xref="GeneID:7388307"
CDS 123766..124239
/locus_tag="Avi_0136"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548081.1"
/db_xref="GI:222147124"
/db_xref="GeneID:7388307"
/translation="MSKSTRATLAMEKAGLAFTVHHYDYDPNAERIGLQAAEAIGEEP
RRVLKTLMAEVDGKPVCVVLPSDQEVSMKKLAAAIGGKHAAMMKPAAAEKLTGFVVGG
ISPFGQKKSVPTVIELSALNESHVYLNGGQRGLQVRLEPKAAQAALNAIAASVIA"
misc_feature 123778..124191
/locus_tag="Avi_0136"
/note="This CD includes cysteinyl-tRNA(Pro) deacylases
from Haemophilus influenzae and Escherichia coli and other
related bacterial proteins. These trans-acting,
single-domain proteins are homologs of ProX and also the
cis-acting prolyl-tRNA synthetase (ProRS)...; Region:
YbaK_deacylase; cd00002"
/db_xref="CDD:88582"
misc_feature order(123910..123912,124066..124071,124150..124152)
/locus_tag="Avi_0136"
/note="putative deacylase active site [active]"
/db_xref="CDD:88582"
gene 124437..125687
/gene="ampS"
/locus_tag="Avi_0137"
/db_xref="GeneID:7388308"
CDS 124437..125687
/gene="ampS"
/locus_tag="Avi_0137"
/codon_start=1
/transl_table=11
/product="aminopeptidase"
/protein_id="YP_002548082.1"
/db_xref="GI:222147125"
/db_xref="GeneID:7388308"
/translation="MTLPDVSNSIDPVKLDKLAEVAVKVGLRLVPGQDLVITAPLNAL
PLVRNITRHAYMVGAGLVTTFYSDEETTLARYAHGADASFDRASGWLYEGMAKAYAGG
AARLAISGDNPMLLASQDPAKVARANKANSIAFKPALEPISNFDINWNISSYPNPSWA
AQVFPDLPLDEAVKKLADAIFAASRVDQPDPVAAWMAHNGELAKRSAWLNGERFSSLH
FTGPGTDLRVGLADGHEWHGGASTAKNGITCNPNIPTEEVFTTPHALKVDGVVSSTKP
LSHQGTLIDNIQVRFEAGRIVEAKASRGEEVLNKVLDTDEGARRLGEVALVPHSSPIS
ASGILFYNTLFDENASCHIALGQCYSKCFLDGASLTPEQIKAQGGNSSLIHIDWMIGS
DKVDIDGVKADGTTVPVMRKGEWA"
misc_feature 124476..125681
/gene="ampS"
/locus_tag="Avi_0137"
/note="Thermophilic metalloprotease (M29); Region:
Peptidase_M29; pfam02073"
/db_xref="CDD:145308"
gene complement(125849..126040)
/locus_tag="Avi_0138"
/db_xref="GeneID:7388309"
CDS complement(125849..126040)
/locus_tag="Avi_0138"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548083.1"
/db_xref="GI:222147126"
/db_xref="GeneID:7388309"
/translation="MQEQQQLAAETAAREAALAAEATAEADARDAAEKARISRLLEDE
ATRKAQRDQRYANRKARQG"
gene complement(126263..126529)
/locus_tag="Avi_0140"
/db_xref="GeneID:7388310"
CDS complement(126263..126529)
/locus_tag="Avi_0140"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548084.1"
/db_xref="GI:222147127"
/db_xref="GeneID:7388310"
/translation="MPGTRRCHPERRDPMAENYSKSRQQAEIAFDKEQSQFFARGRAV
EEQDSLVLAREEKTLRLREARLAKELQDQQMADAATAAKTTRKA"
gene complement(126916..127140)
/gene="cspA"
/locus_tag="Avi_0142"
/db_xref="GeneID:7388311"
CDS complement(126916..127140)
/gene="cspA"
/locus_tag="Avi_0142"
/codon_start=1
/transl_table=11
/product="cold shock protein"
/protein_id="YP_002548085.1"
/db_xref="GI:222147128"
/db_xref="GeneID:7388311"
/translation="MKGFIMTTGTVKWFNSTKGFGFIQPDNGGPDAFVHISAVERAGM
REIVEGQKIAYDMERDNKSGKMSACNLQAA"
misc_feature complement(126955..127119)
/gene="cspA"
/locus_tag="Avi_0142"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box protein; Region:
CSP_CDS; cd04458"
/db_xref="CDD:88424"
misc_feature complement(order(126955..126957,127042..127044,
127075..127077,127102..127104))
/gene="cspA"
/locus_tag="Avi_0142"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:88424"
misc_feature complement(order(127036..127047,127066..127086))
/gene="cspA"
/locus_tag="Avi_0142"
/note="RNA-binding motif; other site"
/db_xref="CDD:88424"
gene complement(127450..129081)
/gene="xseA"
/locus_tag="Avi_0143"
/db_xref="GeneID:7388312"
CDS complement(127450..129081)
/gene="xseA"
/locus_tag="Avi_0143"
/note="bidirectionally degrades single-stranded DNA into
large acid-insoluble oligonucleotides"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease VII large subunit"
/protein_id="YP_002548086.1"
/db_xref="GI:222147129"
/db_xref="GeneID:7388312"
/translation="MASFFDDDQPSNLTEFSVSELSGSIKRTIETAFDQVRVRGEISG
FRGQHSSGHAYFSLKDDKARIDAVIWKGSFSKLKYRPEEGMEVIATGRITTFPGSSKY
QIVIEQMEPAGAGALMALIEERKRRFTAEGLFDPATKQLLPFMPKVIGVVTSPTGAVI
RDILHRISDRFPVHVLVWPVKVQGEGSGDEVANAINGFNAFQPDGVIPRPDVLIVARG
GGSLEDLWSFNDEAVVRAAAASAIPLISAVGHETDWTLIDYAADVRAPTPTGAAEMAV
PVKADLEAQLAGLAARLAGAVNRQMDHRRQNLRALARALPSLDQLLALPRRRFDEAAS
GLGRSLELNTMTKRQSFERAAAKLSPDMLVRRLVERRQRVSERAALSDRIIERLIERQ
KANLGRIDATLTAVPARLKAQTGRSRDRLDSFSRRADSAVINDLRRARSTVSAHDRML
QSLSYKNVLMRGYAVIRGQDDRPLSRAAGLEDGRAIAIEFADGRVSAVTGEGDKASPP
PQAASATTTPAPGRPNPLPKSPKKSEPPAGQGSLF"
misc_feature complement(127588..129051)
/gene="xseA"
/locus_tag="Avi_0143"
/note="exodeoxyribonuclease VII large subunit; Reviewed;
Region: xseA; PRK00286"
/db_xref="CDD:178962"
misc_feature complement(128743..128979)
/gene="xseA"
/locus_tag="Avi_0143"
/note="ExoVII_LU_OBF: A subfamily of OB folds
corresponding to the N-terminal OB-fold domain of
Escherichia coli exodeoxyribonuclease VII (ExoVII) large
subunit. E. coli ExoVII is composed of two non-identical
subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF;
cd04489"
/db_xref="CDD:72961"
misc_feature complement(order(128752..128754,128812..128814,
128818..128820,128824..128826,128971..128973))
/gene="xseA"
/locus_tag="Avi_0143"
/note="generic binding surface II; other site"
/db_xref="CDD:72961"
misc_feature complement(order(128767..128775,128800..128808,
128827..128829,128872..128874,128878..128886,
128902..128904,128908..128919,128950..128958))
/gene="xseA"
/locus_tag="Avi_0143"
/note="generic binding surface I; other site"
/db_xref="CDD:72961"
gene complement(129493..131370)
/locus_tag="Avi_0147"
/db_xref="GeneID:7388313"
CDS complement(129493..131370)
/locus_tag="Avi_0147"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548087.1"
/db_xref="GI:222147130"
/db_xref="GeneID:7388313"
/translation="MTSKSSLPVFSATCLVKTHGTAARLLPVMLGYCLLVIVAICATT
LPFAKDYVGADNDDAMRLIEVRDYLAGQGWFDMMQYRLGLAPGTLMHWSRLIDWPIAA
LIRLAGIWFVPRTAEAVALAIWPLLWTVPVMLSLGAAGWTLGGRVTMHLALCLSALYL
LTSNRFLPGAIDHHNVQIALIAFLTAVLSTAAPATQSDARSGTRSSTLFALAGAAAAL
ALAIGAETTPLIATTCAIVALLWAWHGKAMRACAMAYSLSLALSVTLLFVATVPPQSY
RTVTCDNLSFGFYALTAIGGGLLFSAAAFASRFPAGIRLFLLLVIGASVGFSALIVAP
QCLGNPLANLDPMLVTLWLNNVGEARSIFAMAQQEPGTLGGFYAVGLFGLLVCLIQVW
RKNQVEAHLALALLLAVSLGVALIQVRGAMFSNLIPILPLALLVADLRRRAMLRPARM
IPSLAYIASILLSVPSVWAIAGTLAVEGTARLKPQSRSGPASQDASRDCSSENALVQL
TSLAPTTVAAPSESGTSILRFTPHRILTAPYHRNQAGMLTELHIGLSTPPDARAFLVG
AHVGILAFCPSDSQTRQLIALKPDGLYADLNRNRVPDYLQPLAADSQSGLRIFLVKPQ
P"
gene 131531..132535
/gene="exoA"
/locus_tag="Avi_0148"
/db_xref="GeneID:7388314"
CDS 131531..132535
/gene="exoA"
/locus_tag="Avi_0148"
/codon_start=1
/transl_table=11
/product="succinoglycan biosynthesis protein"
/protein_id="YP_002548088.1"
/db_xref="GI:222147131"
/db_xref="GeneID:7388314"
/translation="MGQTPVPDVAVLIPCYNEASTIASVVRGFRTALPQARVYVYDNN
STDGTALAAMLAGAEVLQERRQGKGHVVRRMFADVDADVYLMADGDGTYAPQDANALI
HLLMEERADMVVATRRNVHNDAGRQGHALGNRLFNGLYRFLFGPGFSDIFSGYRAFSR
RYVKTFPAVSAGFEIETEMSVHASRLKLPVVELELDYGRRPEGSHSKLSTLRDGAKIL
WMFAMLSKETRPFATFSALAGLVLAISLGFMVPVLGEYFTTGLVSRLPTWVLSVALLL
MSQLLFIAGLILDSLSRARAEHLRLSYVALPAFVAPENAALSAADSAIDPARSAADAA
"
misc_feature 131552..132430
/gene="exoA"
/locus_tag="Avi_0148"
/note="glycosyltransferase, TIGR04182 family; Region:
glyco_TIGR04182"
/db_xref="CDD:200433"
misc_feature 131561..132079
/gene="exoA"
/locus_tag="Avi_0148"
/note="DPM_DPG-synthase_like is a member of the
Glycosyltransferase 2 superfamily; Region:
DPM_DPG-synthase_like; cd04179"
/db_xref="CDD:133022"
misc_feature order(131570..131572,131576..131578,131798..131800)
/gene="exoA"
/locus_tag="Avi_0148"
/note="Ligand binding site; other site"
/db_xref="CDD:133022"
misc_feature order(131657..131659,131795..131800)
/gene="exoA"
/locus_tag="Avi_0148"
/note="Putative Catalytic site; other site"
/db_xref="CDD:133022"
misc_feature 131792..131800
/gene="exoA"
/locus_tag="Avi_0148"
/note="DXD motif; other site"
/db_xref="CDD:133022"
gene 132532..132906
/locus_tag="Avi_0149"
/db_xref="GeneID:7388315"
CDS 132532..132906
/locus_tag="Avi_0149"
/codon_start=1
/transl_table=11
/product="GtrA family protein"
/protein_id="YP_002548089.1"
/db_xref="GI:222147132"
/db_xref="GeneID:7388315"
/translation="MKKLVRFALVGSTGFAVDAGLLWLLLSYSALGPLAARALAILVA
LLVTWRLNRAFTFGASRRSLAVEGFRYGSVGVVSALVNYGLYAGLLIVIPALNPFAAL
VFASLAAMAFSFFGYSRFVFRR"
gene complement(132926..133912)
/locus_tag="Avi_0150"
/db_xref="GeneID:7388316"
CDS complement(132926..133912)
/locus_tag="Avi_0150"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002548090.1"
/db_xref="GI:222147133"
/db_xref="GeneID:7388316"
/translation="MLRFGILSTAKIGRELVVPAIQDAEGAVVSAIASRDLAKARAMA
DRFSVPHAFGSYEEMLASDLIDAVYIPLPTAQHVEWTIKAADAGKHVLCEKPIALKAE
DIDSLIAARDRNKVLISEAFMVTYAPVWHKVRALLADGAIGKLRHVQGSFSYFNRDPG
NMRNIPELGGGALPDIGVYPTITARFVTGLEPVRVQAVTQRDAEFGTDIYSSVKADFG
SFEMSFYIATQMAARQTMVFHGDEGFIEVKSPFNADRWGAEELELTNRNHSESQIFRF
PDSRQYRLEAEAFAKAARGEESDVVTLENSRANQRFIDAIYRASEKDGWEPV"
misc_feature complement(132929..133912)
/locus_tag="Avi_0150"
/note="Predicted dehydrogenases and related proteins
[General function prediction only]; Region: MviM; COG0673"
/db_xref="CDD:31017"
misc_feature complement(133547..133909)
/locus_tag="Avi_0150"
/note="Oxidoreductase family, NAD-binding Rossmann fold;
Region: GFO_IDH_MocA; pfam01408"
/db_xref="CDD:201778"
misc_feature complement(<133307..133513)
/locus_tag="Avi_0150"
/note="Oxidoreductase family, C-terminal alpha/beta
domain; Region: GFO_IDH_MocA_C; pfam02894"
/db_xref="CDD:202453"
gene 134057..135010
/locus_tag="Avi_0151"
/db_xref="GeneID:7388317"
CDS 134057..135010
/locus_tag="Avi_0151"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_002548091.1"
/db_xref="GI:222147134"
/db_xref="GeneID:7388317"
/translation="MQKRNLGRSGLTIAPVVFGGNVFGWTADEQTSFRLLDAFFDAGY
NAIDTADVYSRWIDGHSGGESETVIGKWLKQGHVARDKAVIVTKVGMDMGQGKPALSA
KWIVEAVENSLKRLQTDYIDLYLSHTFDADTPHEETLGAYARLKDEGKIRAFGCSNFD
AVQLQASFDAAAKAGLPRYDVIQPEYNLYTREKFEGSLAELCIREDIGVISYYALAAG
FLTGKYRQVEDAEGKARSYRVTNYLNDKGHRILAALDAVAAETGTTPATVAIAWVAAR
PGITAPIASATSLSQLEAMVRAGTLELSAAQMQSLNEAGAD"
misc_feature 134057..135007
/locus_tag="Avi_0151"
/note="Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion];
Region: Tas; COG0667"
/db_xref="CDD:31011"
misc_feature 134063..134998
/locus_tag="Avi_0151"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature order(134111..134119,134198..134200,134213..134215,
134318..134320,134435..134440,134525..134530,
134603..134605,134690..134707,134852..134854,
134903..134914,134927..134929,134936..134941)
/locus_tag="Avi_0151"
/note="active site"
/db_xref="CDD:119408"
misc_feature order(134198..134200,134213..134215,134318..134320,
134435..134437)
/locus_tag="Avi_0151"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene complement(135057..135947)
/locus_tag="Avi_0152"
/db_xref="GeneID:7388318"
CDS complement(135057..135947)
/locus_tag="Avi_0152"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_002548092.1"
/db_xref="GI:222147135"
/db_xref="GeneID:7388318"
/translation="MNRIQLSQLAVLATVAETSSFRKAAEELGIAPSAVSHAVSALEA
SLGVRLLARTTRSVAPTEEGRQLLQKLAPALADIGTALETLAENKSNPAGPLRITMPA
LAAEDLIVPRLGDFLGLYPDIQLELITNDQFEDIVEKGFDAGLRLGEHLETDMVAVKA
SGPISGTIIGAPSYFERHPLPVHPHDLMEHRCIRRRFSSGRIYRWELEKHGKQIAVDV
PDVLTLADQRLIRLAALKGVGLAFVFDQRVDKDIREGRLIRVLEDWCPPFDGFYIYYP
TRRQMRPALRAFVDFFRHRS"
misc_feature complement(135063..135938)
/locus_tag="Avi_0152"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(135753..135932)
/locus_tag="Avi_0152"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(135072..135674)
/locus_tag="Avi_0152"
/note="The C-terminal substrate binding domain of an
uncharacterized LysR-type transcriptional regulator
CrgA-like, contains the type 2 periplasmic binding fold;
Region: PBP2_CrgA_like_5; cd08474"
/db_xref="CDD:176163"
misc_feature complement(order(135135..135137,135216..135218,
135267..135269,135456..135458,135465..135467,
135507..135509,135624..135626,135636..135638))
/locus_tag="Avi_0152"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176163"
misc_feature complement(order(135240..135242,135249..135254,
135273..135287,135375..135377,135561..135581,
135585..135587,135597..135599,135606..135611,
135615..135620,135630..135635))
/locus_tag="Avi_0152"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176163"
gene 136050..137051
/locus_tag="Avi_0153"
/db_xref="GeneID:7388319"
CDS 136050..137051
/locus_tag="Avi_0153"
/codon_start=1
/transl_table=11
/product="aldo-keto reductase"
/protein_id="YP_002548093.1"
/db_xref="GI:222147136"
/db_xref="GeneID:7388319"
/translation="MKTRKLGSDLSVSAIGLGCMGMSHAYSPSADESASLATLARAVE
LGVTFFDTAEVYGPFTNEILVGKGLKPYRDQVVIATKFGFKIDPAQSSQNAMVGLDSR
PEHLKAVAEASLQRLGIDVIDLFYQHRVDPDVTIEETVGAMADLVKQGKVRALGLSEA
SAETLRRAHAVHPIAAIQSEYSLWTRDPEENGVLDTCRELGIGFVPFSPLGRGTLTGA
LKNLDGLSDTDFRRGLPRFQQENFDANLALINALEDMATAKAVTAAQLALAWVLAQGD
FIVPIPGTTKIANLEKNIGAVDIALSEEEVSALGDLLSPQKVAGGRYPEKMAAMANK"
misc_feature 136050..137009
/locus_tag="Avi_0153"
/note="Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion];
Region: Tas; COG0667"
/db_xref="CDD:31011"
misc_feature 136056..136985
/locus_tag="Avi_0153"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature order(136101..136109,136200..136202,136215..136217,
136290..136292,136431..136436,136521..136526,
136581..136583,136668..136685,136788..136790,
136890..136901,136914..136916,136923..136928)
/locus_tag="Avi_0153"
/note="active site"
/db_xref="CDD:119408"
misc_feature order(136200..136202,136215..136217,136290..136292,
136431..136433)
/locus_tag="Avi_0153"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene complement(137126..137698)
/locus_tag="Avi_0154"
/db_xref="GeneID:7388320"
CDS complement(137126..137698)
/locus_tag="Avi_0154"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548094.1"
/db_xref="GI:222147137"
/db_xref="GeneID:7388320"
/translation="MKEKLMSSLAQSSLAKLSAVALVAALAVPLAATSANAAVQVGML
TCEMSPGISAVVGSSRDLTCEFKPTTSAPVEYYQGTLSKIGIDLGYVQGGKMAWAVYA
PGRLVEGALQGSYGGTSANAAVGFGGAVNLLMGGFQGSVALQPIALESTLGVNLGATL
ASLKLAYMPPSTPKSLDNGPPLRHGKHYKG"
misc_feature complement(137204..137581)
/locus_tag="Avi_0154"
/note="Protein of unknown function (DUF992); Region:
DUF992; pfam06186"
/db_xref="CDD:148032"
gene complement(137863..138480)
/locus_tag="Avi_0155"
/db_xref="GeneID:7388321"
CDS complement(137863..138480)
/locus_tag="Avi_0155"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548095.1"
/db_xref="GI:222147138"
/db_xref="GeneID:7388321"
/translation="MKILAVCLGQPQTLPGKSYRTGIFKSSRSGPIMVDEHGLVGDAV
LNRKYHGGPDQAIYLEGALTLQWWESQLNRQMTPGLFGENLVIDGLDNRDLAVGDRLS
IGDVLLEVTAPRIPCATFSASMEDSGFAKRYTRAAQPGAYCRVLQGGVVEAGMIAEWT
ASEGDRLMLAQMIGKSFKSLDPYQKVRYLTFPIAARIRAEITETR"
misc_feature complement(137872..138480)
/locus_tag="Avi_0155"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG2258"
/db_xref="CDD:32439"
misc_feature complement(138007..138372)
/locus_tag="Avi_0155"
/note="MOSC domain; Region: MOSC; pfam03473"
/db_xref="CDD:202655"
gene 138537..139142
/gene="recR"
/locus_tag="Avi_0156"
/db_xref="GeneID:7388322"
CDS 138537..139142
/gene="recR"
/locus_tag="Avi_0156"
/note="involved in a recombinational process of DNA
repair, independent of the recBC complex"
/codon_start=1
/transl_table=11
/product="recombination protein RecR"
/protein_id="YP_002548096.1"
/db_xref="GI:222147139"
/db_xref="GeneID:7388322"
/translation="MAKRVTGPEIEKLIQLLAKVPGLGPRSARRAALHLIKKREQLMG
PLALAMGEAHAKVKICSCCGNVDTIDPCTVCTDERRDQSMIIVVEDVSDLWALERAGA
MNVAYHVLGGTLSPLDGVGPDDLNIKGLIDRVAKGGVREIIIAVNATVEGQTTAHYIT
DHLAGLGVKTTRLAHGVPVGGELDYLDEGTLSAALRARTLI"
misc_feature 138552..139139
/gene="recR"
/locus_tag="Avi_0156"
/note="recombination protein RecR; Reviewed; Region: recR;
PRK00076"
/db_xref="CDD:178844"
misc_feature 138657..138779
/gene="recR"
/locus_tag="Avi_0156"
/note="RecR protein; Region: RecR; pfam02132"
/db_xref="CDD:202123"
misc_feature 138783..139118
/gene="recR"
/locus_tag="Avi_0156"
/note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in Escherichia coli RecR. RecR participates in the RecFOR
pathway of homologous recombinational repair in
prokaryotes. This pathway provides a...; Region:
TOPRIM_recR; cd01025"
/db_xref="CDD:173775"
misc_feature order(138801..138806,138813..138815,138975..138977,
138981..138983,138987..138989)
/gene="recR"
/locus_tag="Avi_0156"
/note="putative active site [active]"
/db_xref="CDD:173775"
misc_feature order(138801..138803,138975..138977)
/gene="recR"
/locus_tag="Avi_0156"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173775"
misc_feature order(138819..138827,138831..138836,138957..138959,
138963..138965,138969..138971,138978..138980,
139014..139016,139044..139079,139083..139085,
139098..139100,139104..139106,139110..139118)
/gene="recR"
/locus_tag="Avi_0156"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:173775"
gene 139194..140450
/gene="mltB"
/locus_tag="Avi_0157"
/db_xref="GeneID:7388323"
CDS 139194..140450
/gene="mltB"
/locus_tag="Avi_0157"
/codon_start=1
/transl_table=11
/product="lytic murein transglycosylase"
/protein_id="YP_002548097.1"
/db_xref="GI:222147140"
/db_xref="GeneID:7388323"
/translation="MPHFRRPLMAALAAALCFLAIKSAMAAPSKAEIESRFQSWISRD
LWPQAKKAGISQATFTSVMKTVKLDWSLPDLAPPGFPPPKQRPQSQAEFSSPGPYFRE
ARMQALAASGRALADQYASTLKKIEAKYGVPGPILLALWGRETGYGRAKLPYEAVDVL
ATSAFMSTRQELFTRELIDALHIIDGKDIAADAMLSSSAGALGQPQFMPSSFLQYAVD
FDGDGHRNIWTSVPDSLASMANFLVQKGWQRGRDWGFEVTIPSGVSCAQEGPDLAKPM
SAWAATGISRIGGKAFPKQDLSAATMMLVPAGTHGPEFLVTPNFYVLKEYNNSDLYAL
FIGNLADRIAYGSGSFSAPWGDVGHMLRSDVQSMQQTLVKKGYDVGKADGLAGFKTRR
SLGDWQAKNGLKPTCFPDEGLKAKLK"
misc_feature 139302..140216
/gene="mltB"
/locus_tag="Avi_0157"
/note="Transglycosylase SLT domain; Region: SLT_2;
pfam13406"
/db_xref="CDD:205584"
misc_feature 139782..>139958
/gene="mltB"
/locus_tag="Avi_0157"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs catalyze...; Region:
LT_GEWL; cd00254"
/db_xref="CDD:29556"
misc_feature order(139815..139817,139914..139916)
/gene="mltB"
/locus_tag="Avi_0157"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:29556"
misc_feature 140277..140444
/gene="mltB"
/locus_tag="Avi_0157"
/note="Putative peptidoglycan binding domain; Region:
PG_binding_1; pfam01471"
/db_xref="CDD:201815"
gene complement(140493..143930)
/locus_tag="Avi_0158"
/db_xref="GeneID:7388324"
CDS complement(140493..143930)
/locus_tag="Avi_0158"
/codon_start=1
/transl_table=11
/product="Hemolysin-type calcium-binding protein"
/protein_id="YP_002548098.1"
/db_xref="GI:222147141"
/db_xref="GeneID:7388324"
/translation="MATLTGDSGNNTLNGTTAADTISGLAGDDILNGSDGNDTLDGGE
GADTLNGGAGTDTASYASSSAAIKINLVTGTNTGGDAAGDTLTGIDKIIGSDFNDTFT
SNSEITLAGGKGDDTYVVGNSNVSVSESTGAGSDTVRASVNYTLSNYVETLEYIGVGD
FTGTGSAQDNTIIGGAGNDTLIGKAGADILNGGDGSDTASYEGSAAVNVNLKTGVTFG
GDAAGDTFTSIENLTGTSSADTLTGDDNNNVLNGGDGNDTLAGGNGADTLNGGNGADT
LEGGEGADTLSGGIGTDTLVGGEGADTLTGSDGDDTLIGGEGADTLSGGAGTNTASYA
SSLAAIQINLVTGTNTGGEAAGDTLSSIDKIIGSDFNDTFTSNSEITLAGGKGDDTYV
VGNSNVSVSESTGAGSDTVRASVNYTLSNYVETLEYIGVGDFTGTGSAQDNTIIGGAG
NDTLIGKAGADILNGGDGSDTASYEGSAAVNVNLKTGVTSGGDAAGDTFTSIENLTGT
NNADTMTGDDNNNVLNGGGGNDTLAGGNGADTLNGGDGDDSLVGGEGADTLNGGIGTD
TASYASSLAAIKINLVTGTNTGGDAADDTLSGIDKIIGSDFNDTFTANSTITFAGGKG
DDTYVVGNSNVSVSESTGAGSDTVRASVNYTLSDYVETLEYIGAGYFTGTGNTQDNTI
IGGAGNDTLIGKAGADILNGGDGSDTASYEGSSAVNINLKSNVATGGEAAGDTFTSIE
NLTGTSNADTLTGNDNNNVLKGGDGNDTLAGGKGADTLTGGNGDDTLEGGEGADKLDG
GIGNDTLVGGEGADTLTGSDGDDTFVGGEGADTLSGGAGTDTASYASSLAAIKINLVT
GTNTGGEAADDTLTGIDKIIGSDFNDTFTASSSITLAGGKGDDTYVVSQIATTTVLVE
EASAGTDTVETTLTSYTLKTNFENLTHTDSTNFLGYGNSADNVIVSQGGVDKLYGYAG
NDTIRGGSGGDTIDGGDGSDTASYSDSTAAVTINLLTKTISGGYATGDVFTSIENVEG
SAYADTLTGDTGANVLSGGASDDVLDGGTGNDALYGGEGSDVFVFNASYGNDVVFDFQ
ASSDTIDLTGMGFATVSDAAAYASEIEDGVLFNFGNGDTLAVHGLSYASLTSSDTLM"
misc_feature complement(<143760..>143915)
/locus_tag="Avi_0158"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
misc_feature complement(<141786..>141908)
/locus_tag="Avi_0158"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
misc_feature complement(<141549..141824)
/locus_tag="Avi_0158"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
misc_feature complement(<140637..>140858)
/locus_tag="Avi_0158"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
gene complement(144368..148540)
/locus_tag="Avi_0160"
/db_xref="GeneID:7388325"
CDS complement(144368..148540)
/locus_tag="Avi_0160"
/codon_start=1
/transl_table=11
/product="Hemolysin-type calcium-binding protein"
/protein_id="YP_002548099.1"
/db_xref="GI:222147142"
/db_xref="GeneID:7388325"
/translation="MTTLTGDSGNNTLAGTSSDDTISGLAGDDILNGGDGNDTLKGGA
GADALNGGSGSDTASYAGSVAVNVNLKTGITSGGDAVGDTFDSIENLTGSSNADILTG
DDGDNVIHGGGGDDTLDGGKGADTLIGGTEADTASYANSDAAVQVNLVTGVNAGGDAE
GDILDNIRKIAGSDFDDTFTGSSSITFAGGKGDDTYYVGSTSVTISEAKGAGDNDTVQ
SSVNYTLSGYVEILKYTGTGDFTGTGSAQDNIIVGGSGNDTLIGKAGADTLIGGDGSD
TASYAGSVAVNVNLKTGITSGGDAVGDTFDSIENLTGSSNADILTGDDGDNVIHGGGG
DDTLDGGKGADTLIGGTEADTASYANSDAAVQVNLVTGVNAGGDAEGDILDNIRKIAG
SDFDDTFTGSSSITFAGGKGDDTYYVGSTSVTISEAKGAGDNDTVQSSVNYTLSDYVE
ILKYTGTGDFTGTGSAQDNIIVGGSGNDTLIGKAGADTLIGGDGSDTASYGGNAAVNV
NLKTNVATGGEAAGDKFYSIENLTGSSNADTLAGNSLANVLNGATGSDTASYVSSDAA
VQINLITGVYTGGDAAGDTLISIEKIAGSDFDDTFTGSSSITFAGGKGDDTYYVGSTS
VTITEVANEGSDTVRASMDYTLSNNLENLVYTGSNDFIGTGNALNNTITGGSGNDTLI
GKAGADVLIGGSGSDTASYAGSAAVNVNLKTNLATGGEAEGDTFSSVENLTGSSNADT
LTGNDSNNLLNGGGGNDTLAGGKGADTLNGGNGSDTANYADSFAAIQINLVTGTHTGG
DAADDTLSSIEGVIGSQYDDRFTSASTGTLSGGGGNDTYVVSQIATTTVLVEEASAGT
DTVETTLTSYTLKTNFENLTHTDSTNFLGYGNSADNVIVSQGGVDKLYGYAGNDTIRG
GSGGDTIDGGDGSDTASYSDSIAAVTINLLSKTVSGGYATGDVFTSIENVEGSAYADT
LTGDTGANVLSGGAGDDILVGGAGADTLNGGAGQDKITYEASSAAVKVDLSTGTATGG
DAQGDKLSSIERVIGSSFNDTLIGSSVAEMLTGGAGDDILIGGGGNDVLNGGGGADVL
DGGAGNYDTLNYSAATSAVALDLTTGTGSGYAAGDTFTGIEAFTGSIYGDTYTGSTYA
AEYNVGAGNDTVLAGSGAEKINGGAGTDTASYALSTAGVSVNLVTNVGSGGYAEGDQY
SSIEVVVGSDYSDTFTSSTDKTLLGGLGDDTYDIGSSASAITENADAGTDLVKTSSAS
YTLGDNLENLTYTGTANFTGSGNSADNVLTGGAGDDVLDGSTGNDALYGGEGSDVFVF
NASYGNDVVFDFQASSDTIDLTGMGFATVSDAAAYASEIEDGVLFNFGNGDTLTVHGL
SYASLTSSDTLM"
misc_feature complement(<147692..>147835)
/locus_tag="Avi_0160"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
misc_feature complement(<147038..>147175)
/locus_tag="Avi_0160"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
misc_feature complement(<146426..>146572)
/locus_tag="Avi_0160"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
misc_feature complement(<145496..>145660)
/locus_tag="Avi_0160"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
misc_feature complement(<144512..>144691)
/locus_tag="Avi_0160"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
gene 148858..149907
/locus_tag="Avi_0161"
/db_xref="GeneID:7388326"
CDS 148858..149907
/locus_tag="Avi_0161"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548100.1"
/db_xref="GI:222147143"
/db_xref="GeneID:7388326"
/translation="MTLNVASAEVRSWIPVIQVAAGATVGKVLDAFRLQIPLGYNSPE
ITFRRLGRSFILGWCAAIKSENFGEIEDTLYAVYPPIFDELIPKNANISRISDISPLI
IGNGWYKNYYHWTLQAIGCLLIYKKHRDDGNILLAMPRLNGWRNEALSLTGFNGQLLE
MDYHHFLHVDDCITSNLTGGGFAHLPHPAVMAEFEALAARVTIERRFSRKIYVSRLDA
GDVRRVVNEKAVCTLLESRGFEIITPGELSVKEQVVAFRDAEVIVAPHGAGLANLVYC
QPGIKTRVIELFQASCINACYARVCQAKGLDYTAIINPDRPGQDADGTLKEIKTRNDM
WQIVDLALLEKVLIE"
misc_feature 149185..149802
/locus_tag="Avi_0161"
/note="Protein of unknown function (DUF563); Region:
DUF563; pfam04577"
/db_xref="CDD:203050"
gene complement(149979..152480)
/locus_tag="Avi_0162"
/db_xref="GeneID:7388327"
CDS complement(149979..152480)
/locus_tag="Avi_0162"
/codon_start=1
/transl_table=11
/product="Hemolysin-type calcium-binding protein"
/protein_id="YP_002548101.1"
/db_xref="GI:222147144"
/db_xref="GeneID:7388327"
/translation="MVYILGGSGNDTITGTSDYDNLSGGLGDDTINGGAGNDVLSGNG
GNDAISGEDGSDSIRGGSGNDSLSGGDGVDTLYGEAGNDSLSGDAGNDVLNGGAGADI
LNGGDGTDTVNYTSSDAININLATGVASGGDAQGDTFVSIEVISASSQDDVLVGDDND
NIFKGGDGSDTIHGGDGDDTLAGGFDADVINGGNGSDTASFVDNMAVVVNLKTGEMSG
DAQGDVLIDIENLMGSYYDDTLTGDDGNNVIDGYYGWDLLDGGLGADTLKGGADGGAA
VYTYSNEAVQINIDTGINTGGYAEGDVFEKILQVYGSDFNDTFTASKDARFAGGLGDD
HYIVNSSSVYLIEQEGEGIDTVTTGLNSYSLTRNFENLTYTGTANFTGSGTVADNVMI
SGAGADYLFGNNGNDTLIGGAGADKLSGGGGNDTSSYRDSTSAVTVNLATGLAQGGFA
QGDTFISIESLEGSAYNDTLTGNRESNTLRGGDGGDVLDGAAGSDTASYLDSTSAVTV
NLQTRTLSGGYANGDTIISIENLEGSTYADSLTGDDQANVLTGRTGADILDGGAGSDT
ANYSDSTEGVIINLVTGQTAGGSAEGDVLVSIENVTGSGEADYLTGNDGSNVLSGGEG
DDHLIGGGGDDLLNAGSGANILDGGDGSDTASYADSSVGISASLSGDAGVGGSAEGDV
LISIEALEGSFYADTLSGSGYADVLKGGEDADTLFGLEGDDSLHGDGGDDVLYADAGD
DTLAGGEGDDALYGGEGSDVFVYSSNYGNDVIFDFDSSADTIDLTDMGFATVSDAAAY
ATEIEDGVLFTFSNVDTLTVHGLNYASLTYSDTLM"
misc_feature complement(<152310..>152468)
/locus_tag="Avi_0162"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
misc_feature complement(<152130..>152255)
/locus_tag="Avi_0162"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
misc_feature complement(<151881..152168)
/locus_tag="Avi_0162"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
misc_feature complement(<150123..>150269)
/locus_tag="Avi_0162"
/note="Peptidase M10 serralysin C terminal; Region:
Peptidase_M10_C; pfam08548"
/db_xref="CDD:117125"
gene complement(152564..154192)
/locus_tag="Avi_0163"
/db_xref="GeneID:7388328"
CDS complement(152564..154192)
/locus_tag="Avi_0163"
/codon_start=1
/transl_table=11
/product="MFS permease"
/protein_id="YP_002548102.1"
/db_xref="GI:222147145"
/db_xref="GeneID:7388328"
/translation="MPDRKSSLAPFKNQIFLTIWLASITSNFGGLIQDVGAAWMMTSI
SSSESMVALVQASNTAPIMLFSLVAGALADGFDRRRVMLFAQVFLLTVSALLSLFTWF
GLLTPWSLLAFTFLIGCGTALNSPAWQASVGDIVGREDLPSAVSLNSMGFNITRSVGP
AIGGLIVAVAGAATAFAINAVSYLAMIYALFRWKPVYPKNTLPRENLGHAIAAGLRYM
AMSPNLMKVLFRGFFFGFCATAILSLLPLVVKDNLGGGPLAYGGLLGAFGIGAIAGAI
SNARIREKLSSEQIVSCSFAGFALASVLTGISHHFWLTAPALVLAGACWVLSLSLFNT
VVQLSTPRWVVGRALSLYQTATFGGMAGGAWIWGLLAESGSAGHALVMAAGLMALGVG
IGLALPMPAFATLDLNPLNRFNEPPLRLDIRPRSGPIVIQIDFEIDDKDVPEFLEVMV
ERRRIRLRDGAQNWALMRDLENPDIWTETYHTPTWVDYVRHNHRRTKADAEITDRLGD
LHKGSKPPHVHRMIERQTIPPADDIFHKPHIDHH"
misc_feature complement(152615..154177)
/locus_tag="Avi_0163"
/note="Transmembrane secretion effector; Region: MFS_3;
pfam05977"
/db_xref="CDD:147889"
misc_feature complement(153068..154147)
/locus_tag="Avi_0163"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(153113..153115,153122..153127,
153134..153139,153146..153151,153182..153184,
153191..153196,153206..153208,153215..153220,
153227..153229,153368..153370,153380..153382,
153389..153391,153401..153403,153413..153415,
153455..153457,153464..153469,153476..153481,
153488..153490,153698..153700,153743..153748,
153755..153760,153794..153796,153803..153808,
153815..153820,153827..153832,153983..153988,
153992..153997,154007..154009,154016..154021,
154028..154030,154079..154084,154088..154096,
154103..154105))
/locus_tag="Avi_0163"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 154495..155109
/locus_tag="Avi_0164"
/db_xref="GeneID:7388329"
CDS 154495..155109
/locus_tag="Avi_0164"
/note="in Streptococcus pneumoniae this gene was found to
be essential; structure determination of the Streptococcus
protein shows that it is similar to a number of other
proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548103.1"
/db_xref="GI:222147146"
/db_xref="GeneID:7388329"
/translation="MSEHVPADEAPEPRLITETGLDRRIADIIEPVIVELGFELVRVR
ILNQNGMTLQIMAERKDGTMTVEDCEELSMAISPVLDVEDPVDKEYHLEVSSPGIDRP
MVRASDFTRWQGNLLKCETSILIDNRKRFRGKIADVTPDGFILERDQVAYGEEPRLTI
PFTALAEAKLILTDDLVRDALRADKQAKAAAEAANQNDETGEDQ"
misc_feature 154543..155010
/locus_tag="Avi_0164"
/note="ribosome maturation protein RimP; Reviewed; Region:
PRK00092"
/db_xref="CDD:178857"
misc_feature 154573..>154836
/locus_tag="Avi_0164"
/note="Sm and related proteins; Region: Sm_like; cl00259"
/db_xref="CDD:212599"
misc_feature 154786..155016
/locus_tag="Avi_0164"
/note="Bacillus subtilis YxlS-like, C-terminal domain;
Region: YlxS_C; cd01734"
/db_xref="CDD:212481"
misc_feature order(154852..154854,154858..154860,154879..154881,
154885..154887,154903..154905,154924..154926,
154957..154959,154966..154971,154975..154980,
154984..155001)
/locus_tag="Avi_0164"
/note="putative oligomer interface [polypeptide binding];
other site"
/db_xref="CDD:212481"
misc_feature order(154909..154911,154915..154917,154975..154977)
/locus_tag="Avi_0164"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:212481"
gene 155168..156784
/gene="nusA"
/locus_tag="Avi_0166"
/db_xref="GeneID:7388330"
CDS 155168..156784
/gene="nusA"
/locus_tag="Avi_0166"
/note="modifies transcription through interactions with
RNA polymerase affecting elongation, readthrough,
termination, and antitermination"
/codon_start=1
/transl_table=11
/product="transcription elongation factor NusA"
/protein_id="YP_002548104.1"
/db_xref="GI:222147147"
/db_xref="GeneID:7388330"
/translation="MAVSANRLELLQIADAVAREKVIDREIVLAAMADAIQKAARSRY
GSETNIRADINSKTGEIRLQRLLEVVETVEDYGTQIALELARDRNVDAKLGDYIADPL
PPMDFGRIAAQSAKQVIVQKVREAERDRQFDEFKDRVGEIINGTVKRVEYGNVIVDLG
RGEGIIRRDEMIPRETMRYGDRVRAYVYDVRREQRGPQIFLSRTHPQFMVKLFTMEVP
EIYDGVIQIKSVARDPGSRAKIAVISNDSSIDPVGACVGMRGSRVQAVVGELQGEKID
IIPWSADPASFIVNALQPAEVAKVVLDEDAERIEVVVPDEQLSLAIGRRGQNVRLASQ
LTGWDIDIMTEAEESERRQKEFNERTNLFMDALDVDEMVGQVLASEGFAQVEELAYVD
LEEIASIDGFDGDTAEEIQTRAREYLEKLEAELDAKRKALGVSDELRSIDGMTTQMLV
ALGGDGIKTVEDFAGCAADDLIGWSERKDGETKKFEGLFSKIDISRTEAEQMIVQARL
AAGWITEADIAAEAEAEVVEDEAQEAEQGS"
misc_feature 155183..156604
/gene="nusA"
/locus_tag="Avi_0166"
/note="transcription elongation factor NusA; Validated;
Region: nusA; PRK09202"
/db_xref="CDD:181696"
misc_feature 155192..155557
/gene="nusA"
/locus_tag="Avi_0166"
/note="NusA N-terminal domain; Region: NusA_N; pfam08529"
/db_xref="CDD:192057"
misc_feature 155576..155776
/gene="nusA"
/locus_tag="Avi_0166"
/note="S1_NusA: N-utilizing substance A protein (NusA),
S1-like RNA-binding domain. S1-like RNA-binding domains
are found in a wide variety of RNA-associated proteins.
NusA is a transcription elongation factor containing an
N-terminal catalytic domain and three...; Region: S1_NusA;
cd04455"
/db_xref="CDD:88421"
misc_feature order(155609..155611,155633..155635,155660..155662,
155666..155668)
/gene="nusA"
/locus_tag="Avi_0166"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88421"
misc_feature order(155615..155617,155627..155629,155654..155656,
155660..155662,155759..155761)
/gene="nusA"
/locus_tag="Avi_0166"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:88421"
misc_feature 155867..156067
/gene="nusA"
/locus_tag="Avi_0166"
/note="NusA-like KH domain; Region: KH_5; pfam13184"
/db_xref="CDD:205365"
misc_feature 155936..155947
/gene="nusA"
/locus_tag="Avi_0166"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48407"
misc_feature 156017..156196
/gene="nusA"
/locus_tag="Avi_0166"
/note="NusA_K homology RNA-binding domain (KH). NusA is an
essential multifunctional transcription elongation factor
that is universally conserved among prokaryotes and
archaea. NusA anti-termination function plays an important
role in the expression of...; Region: NusA_KH; cd02134"
/db_xref="CDD:48406"
misc_feature 156134..156145
/gene="nusA"
/locus_tag="Avi_0166"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48406"
misc_feature 156272..156421
/gene="nusA"
/locus_tag="Avi_0166"
/note="transcription termination factor NusA, C-terminal
duplication; Region: nusA_Cterm_rpt; TIGR01954"
/db_xref="CDD:131009"
gene 156784..157479
/locus_tag="Avi_0168"
/db_xref="GeneID:7388331"
CDS 156784..157479
/locus_tag="Avi_0168"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548105.1"
/db_xref="GI:222147148"
/db_xref="GeneID:7388331"
/translation="MASDPSLEDGRPAKPVKAVKDGQNDRTCIVTRQPGTPDTLIRFV
AGPDGTLVPDLKRELPGRGCWVSVSREAVDKAVAKKLFARALKMDVTVDPEMGARVDR
LLVQQLAGMMNLARKAGQFVTGSAKVDLAIRSGAALGVFHATDAAADGVRKLDQARKA
WHLGMETDEEIPSYRLFSEAEMQELMGQNAFIHACALAGQAGEGVVKRATLLETYRGL
SPRMASSAGRKPQ"
misc_feature 156793..157476
/locus_tag="Avi_0168"
/note="hypothetical protein; Provisional; Region:
PRK09190"
/db_xref="CDD:181685"
misc_feature 156853..157053
/locus_tag="Avi_0168"
/note="Ylxr homologs; group of conserved hypothetical
bacterial proteins of unknown function; structure revealed
putative RNA binding cleft; proteins are encoded by an
operon that includes other proteins involved in
transcription and/or translation; Region: YlxR; cd00279"
/db_xref="CDD:29345"
misc_feature order(156859..156861,156907..156909,156976..156978)
/locus_tag="Avi_0168"
/note="putative RNA binding cleft [nucleotide binding];
other site"
/db_xref="CDD:29345"
misc_feature 157099..157380
/locus_tag="Avi_0168"
/note="Ribosomal protein L7Ae/L30e/S12e/Gadd45 family;
Region: Ribosomal_L7Ae; cl00600"
/db_xref="CDD:207125"
gene 157583..160363
/gene="infB"
/locus_tag="Avi_0169"
/db_xref="GeneID:7388332"
CDS 157583..160363
/gene="infB"
/locus_tag="Avi_0169"
/note="Protects formylmethionyl-tRNA from spontaneous
hydrolysis and promotes its binding to the 30S ribosomal
subunits during initiation of protein synthesis. Also
involved in the hydrolysis of GTP during the formation of
the 70S ribosomal complex"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-2"
/protein_id="YP_002548106.1"
/db_xref="GI:222147149"
/db_xref="GeneID:7388332"
/translation="MTDSKDDKTLSVTGKKTLTLKPTGVNQGTVRQDMGRGRTKAVVV
ETRKRRPTRPEDERAGQPQGRVGDDAPATAAAAPVQTPAPVQAPAPVAAAPQAPRPAA
PAQRVQQTNQYSQQRHPGQQNRPQASSQPSRQPDRPRGAVLHDLSASEMDARRRALAE
AQVREVEDAKRRAEEEVRRQAEEVERQRLAALEAIRQAEEDKARALEAKNAPEPVAEP
VAPVAETPRAADPAPRAPSPAGAKPAAGAPAPSFVRGRKPEGEDDENRGPARGGPVRG
KVVRPEPAKVPARPKTEDERRRGKLTVTTAAVDEDGNARGRSLSAMRRRQEKFRRSQM
QEPREKVMREVVLPETITIQELSQRMSERAVDVIKYLMKEGQMMKPGDVIDADLAELI
ATEFGHTVKRVSESDVEEGIFDVKDDAGEMVSRPPVVTIMGHVDHGKTSLLDAIRQTS
VVSGEAGGITQHIGAYQVEQNGHKITFIDTPGHAAFTAMRARGAQATDIAILVVAADD
SVMPQTIESIHHAKAANVPIIVAINKIDKHEANPEKVRQQLLQHEVFVESMGGEVLDV
EVSAKNKLNLDKLLEAVLLQAEILDLKADPSRTAEGLVIEAQLDRGRGSVATVLVQKG
TLRPGQIIVAGDQWGRVRALVNDKGGHVKEAGPAMPVEVLGLSGTPAAGDKFAVVESE
ARAREISEYRQRLARDKAAARQSGQRGSLEQMMSKLQDTGFKEFPLVIKADVQGSVEA
IVAALDKLGTDEVRARIVHSGAGAITESDISLAEASNAAIIGFNVRANVQARAASERT
GTEIRYYNIIYDLVDDVKAAMSGLLSPERRETFLGNAEILEVFNITKTGKVAGCRVVE
GKVERGAGVRLVRDNVVIHEGKLKTLKRFKDEVADVPMGQECGMAFENYEDIRAGDTI
ECFRVEHITRTL"
misc_feature <157655..157735
/gene="infB"
/locus_tag="Avi_0169"
/note="Bacterial translation initiation factor IF-2
associated region; Region: IF2_assoc; pfam08364"
/db_xref="CDD:203919"
misc_feature 158609..160360
/gene="infB"
/locus_tag="Avi_0169"
/note="translation initiation factor IF-2; Region: IF-2;
TIGR00487"
/db_xref="CDD:161900"
misc_feature 158624..158779
/gene="infB"
/locus_tag="Avi_0169"
/note="Translation initiation factor IF-2, N-terminal
region; Region: IF2_N; pfam04760"
/db_xref="CDD:203084"
misc_feature 158861..159352
/gene="infB"
/locus_tag="Avi_0169"
/note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
/db_xref="CDD:206674"
misc_feature 158879..158902
/gene="infB"
/locus_tag="Avi_0169"
/note="G1 box; other site"
/db_xref="CDD:206674"
misc_feature order(158882..158884,158888..158890,158900..158905,
158912..158914,158921..158926,158972..158977,
159029..159034,159101..159106,159209..159211,
159221..159223)
/gene="infB"
/locus_tag="Avi_0169"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206674"
misc_feature order(158885..158905,159032..159034,159179..159184,
159188..159193,159287..159295)
/gene="infB"
/locus_tag="Avi_0169"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206674"
misc_feature 158954..158974
/gene="infB"
/locus_tag="Avi_0169"
/note="Switch I region; other site"
/db_xref="CDD:206674"
misc_feature 158960..158962
/gene="infB"
/locus_tag="Avi_0169"
/note="G2 box; other site"
/db_xref="CDD:206674"
misc_feature 159017..159028
/gene="infB"
/locus_tag="Avi_0169"
/note="G3 box; other site"
/db_xref="CDD:206674"
misc_feature 159023..159079
/gene="infB"
/locus_tag="Avi_0169"
/note="Switch II region; other site"
/db_xref="CDD:206674"
misc_feature 159179..159190
/gene="infB"
/locus_tag="Avi_0169"
/note="G4 box; other site"
/db_xref="CDD:206674"
misc_feature 159287..159295
/gene="infB"
/locus_tag="Avi_0169"
/note="G5 box; other site"
/db_xref="CDD:206674"
misc_feature 159380..159664
/gene="infB"
/locus_tag="Avi_0169"
/note="This family represents the domain II of bacterial
Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
homologue mtIF2. IF2, the largest initiation factor is an
essential GTP binding protein. In E. coli three natural
forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
cd03702"
/db_xref="CDD:58093"
misc_feature 159710..160033
/gene="infB"
/locus_tag="Avi_0169"
/note="Translation-initiation factor 2; Region: IF-2;
pfam11987"
/db_xref="CDD:204802"
misc_feature 160079..160330
/gene="infB"
/locus_tag="Avi_0169"
/note="mtIF2_IVc: this family represents the C2 subdomain
of domain IV of mitochondrial translation initiation
factor 2 (mtIF2) which adopts a beta-barrel fold
displaying a high degree of structural similarity with
domain II of the translation elongation factor...; Region:
mtIF2_IVc; cd03692"
/db_xref="CDD:58083"
gene 160528..160941
/gene="rbfA"
/locus_tag="Avi_0170"
/db_xref="GeneID:7388333"
CDS 160528..160941
/gene="rbfA"
/locus_tag="Avi_0170"
/note="associates with free 30S ribosomal subunits;
essential for efficient processing of 16S rRNA; in
Escherichia coli rbfA is induced by cold shock"
/codon_start=1
/transl_table=11
/product="ribosome-binding factor A"
/protein_id="YP_002548107.1"
/db_xref="GI:222147150"
/db_xref="GeneID:7388333"
/translation="MSKPTNSAPSQRMLRVGEQVRAAITQVLQRGEVRDDLIEKTVIS
ISEVRMSTDLKVATAYVSPLGVSDHDTVIAALNRHAKYIRGRIGGQLRQMKYMPEVRF
RDDTSFDNYQKIDALLRSPEVARDLGPDEDKQEDE"
misc_feature 160546..160908
/gene="rbfA"
/locus_tag="Avi_0170"
/note="ribosome-binding factor A; Validated; Region: rbfA;
PRK00521"
/db_xref="CDD:179054"
gene 160946..161875
/gene="truB"
/locus_tag="Avi_0171"
/db_xref="GeneID:7388334"
CDS 160946..161875
/gene="truB"
/locus_tag="Avi_0171"
/note="catalyzes isomerization of specific uridines in RNA
to pseudouridine; responsible for residues in T loops of
many tRNAs"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase B"
/protein_id="YP_002548108.1"
/db_xref="GI:222147151"
/db_xref="GeneID:7388334"
/translation="MSKPRKPKGRPVSGWLILDKPVDYGSTEAVGKIKWLFNAQKAGH
AGTLDPLASGMLPIALGDATKTVPYVMDGRKIYEFTVTWGEERSTDDLEGEATQTSDQ
RPTEEQIRALLPDYTGVINQIPPQFSAIKIAGERAYDLAREGEVVDIPSREVEIHRLT
LLRADHDCADFEVECGKGTYVRSLARDMGRDLGCYGHISELRRSFVAPFAEDMMVPLE
DLVELEKIEDRDERLAALDAFLFDTGEALMALPQIRISDDQAHRLRMGNPIILRGRDA
PVAEPEAVALAGGKLVAIGEIGEGEFRPKRVFA"
misc_feature 160946..161872
/gene="truB"
/locus_tag="Avi_0171"
/note="tRNA pseudouridine synthase B; Provisional; Region:
truB; PRK05389"
/db_xref="CDD:180052"
misc_feature 160985..161614
/gene="truB"
/locus_tag="Avi_0171"
/note="Pseudouridine synthase, Escherichia coli TruB like;
Region: PseudoU_synth_EcTruB; cd02573"
/db_xref="CDD:211339"
misc_feature order(161018..161020,161024..161026,161033..161035,
161069..161077,161081..161095,161135..161137,
161144..161149,161156..161158,161168..161170,
161174..161176,161324..161338,161399..161401,
161474..161491,161552..161554)
/gene="truB"
/locus_tag="Avi_0171"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:211339"
misc_feature order(161081..161092,161489..161491)
/gene="truB"
/locus_tag="Avi_0171"
/note="active site"
/db_xref="CDD:211339"
misc_feature 161696..161869
/gene="truB"
/locus_tag="Avi_0171"
/note="Pseudouridine synthase II TruB, C-terminal; Region:
TruB-C_2; pfam09157"
/db_xref="CDD:204153"
gene 162080..162349
/gene="rpsO"
/locus_tag="Avi_0173"
/db_xref="GeneID:7388335"
CDS 162080..162349
/gene="rpsO"
/locus_tag="Avi_0173"
/note="primary rRNA binding protein; helps nucleate
assembly of 30S; binds directly to the 16S rRNA and an
intersubunit bridge to the 23S rRNA; autoregulates
translation through interactions with the mRNA leader
sequence"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S15"
/protein_id="YP_002548109.1"
/db_xref="GI:222147152"
/db_xref="GeneID:7388335"
/translation="MSITAERKSALIKEYATNEGDTGSPEVQVAILTERITNLTEHFK
GHKKDNHSRRGLLTLVSTRRSLLDYLKKKDEGRYSKLIASLGIRR"
misc_feature 162098..162337
/gene="rpsO"
/locus_tag="Avi_0173"
/note="Ribosomal protein S15 (prokaryotic)_S13
(eukaryotic) binds the central domain of 16S rRNA and is
required for assembly of the small ribosomal subunit and
for intersubunit association, thus representing a key
element in the assembly of the whole ribosome; Region:
Ribosomal_S15p_S13e; cd00353"
/db_xref="CDD:48353"
misc_feature order(162101..162103,162152..162154,162161..162163,
162182..162184,162194..162196,162203..162205,
162215..162217,162221..162226,162230..162235,
162272..162274,162284..162286)
/gene="rpsO"
/locus_tag="Avi_0173"
/note="16S/18S rRNA binding site [nucleotide binding];
other site"
/db_xref="CDD:48353"
misc_feature order(162167..162169,162176..162181,162188..162190,
162197..162199,162317..162319,162329..162331)
/gene="rpsO"
/locus_tag="Avi_0173"
/note="S13e-L30e interaction site [polypeptide binding];
other site"
/db_xref="CDD:48353"
misc_feature order(162257..162259,162269..162271,162332..162337)
/gene="rpsO"
/locus_tag="Avi_0173"
/note="25S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:48353"
gene 162773..164917
/gene="pnpA"
/locus_tag="Avi_0175"
/db_xref="GeneID:7388336"
CDS 162773..164917
/gene="pnpA"
/locus_tag="Avi_0175"
/codon_start=1
/transl_table=11
/product="polynucleotide phosphorylase/polyadenylase"
/protein_id="YP_002548110.1"
/db_xref="GI:222147153"
/db_xref="GeneID:7388336"
/translation="MFNVHSVEIEWAGRPLKLETGKIARQADGAVLASYGETVVLATV
VSAKSPKPGQDFFPLTVNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPL
FPEGYKNDTQVVVTVIQHDLENDPDVLSMVAASAALTLSGVPFMGPVGGARVGYINGE
YVLNPHLDEMDESVLDLVVAGTQDAVLMVESEAKELNEDVMLGAVMFGHRGFQPVIDA
IIKLAEVAAKEPREFEPEDHSALEAEMLSIAEAELRDAYKITQKADRYTAVDAVKAKV
KAHFFPEGAEPKYTNEVIGAVFKHLQAKIVRWNILDTKSRIDGRDLETVRAIVSEVGI
LPRTHGSALFTRGETQAIVVATLGTGEDEQYVDSLTGMYKERFLLHYNFPPYSVGETG
RMGSPGRREIGHGKLAWRAIRPMLPSPEQFPYTLRVVSEITESNGSSSMATVCGTSLA
LMDAGVPLAKPVAGIAMGLILEGERFAVLSDILGDEDHLGDMDFKVAGTEAGITSLQM
DIKIAGITEEIMKVALAQAQNGRKHILGEMANAITEGRSQLGEFAPRIEVMTIPVDKI
REVIGSGGKVIREIVEKTGAKINIEDDGTIKIASASGKEIEAARKWIHSIVAEPEIGV
VYEGTVVKTADFGAFVNFFGSRDGLVHISQLAVDRVAKTQDVVKEGDKVWVKLMGFDE
RGKVRLSMKVVDQATGKEIVGDKKAEGDAAAE"
misc_feature 162773..164854
/gene="pnpA"
/locus_tag="Avi_0175"
/note="polynucleotide phosphorylase/polyadenylase;
Provisional; Region: PRK11824"
/db_xref="CDD:183327"
misc_feature 162785..163471
/gene="pnpA"
/locus_tag="Avi_0175"
/note="Polyribonucleotide nucleotidyltransferase, repeat
1; Region: RNase_PH_PNPase_1; cd11363"
/db_xref="CDD:206768"
misc_feature order(162788..162790,162794..162796,162821..162823,
162827..162829,162836..162838,162866..162868,
162872..162874,162878..162880,162887..162889)
/gene="pnpA"
/locus_tag="Avi_0175"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206768"
misc_feature order(162836..162853,162866..162868,162893..162895,
162899..162901,162905..162907,162911..162913,
162956..162958,162962..162964,162968..162979,
162983..162994,163001..163015,163025..163027,
163100..163102,163106..163108,163112..163114,
163124..163138)
/gene="pnpA"
/locus_tag="Avi_0175"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206768"
misc_feature 163490..163735
/gene="pnpA"
/locus_tag="Avi_0175"
/note="Polyribonucleotide nucleotidyltransferase, RNA
binding domain; Region: PNPase; pfam03726"
/db_xref="CDD:202745"
misc_feature 163742..164404
/gene="pnpA"
/locus_tag="Avi_0175"
/note="Polyribonucleotide nucleotidyltransferase, repeat
2; Region: RNase_PH_PNPase_2; cd11364"
/db_xref="CDD:206769"
misc_feature order(163742..163771,163778..163780,164357..164359,
164369..164371,164381..164383,164393..164398)
/gene="pnpA"
/locus_tag="Avi_0175"
/note="RNase E interface [polypeptide binding]; other
site"
/db_xref="CDD:206769"
misc_feature order(163757..163759,163763..163765,163775..163789,
163811..163816,163826..163828,163832..163834,
163838..163846,163856..163864,163910..163912,
163916..163918,163925..163936,163940..163948,
163955..163957,163961..163963,164051..164053,
164057..164059,164063..164065,164069..164077)
/gene="pnpA"
/locus_tag="Avi_0175"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:206769"
misc_feature order(163913..163915,163919..163921,163970..163972,
163982..163984,164084..164092,164231..164233,
164249..164251,164255..164257,164291..164293,
164297..164299)
/gene="pnpA"
/locus_tag="Avi_0175"
/note="active site"
/db_xref="CDD:206769"
misc_feature 164432..164611
/gene="pnpA"
/locus_tag="Avi_0175"
/note="Polynucleotide phosphorylase (PNPase) K homology
RNA-binding domain (KH). PNPase is a polyribonucleotide
nucleotidyl transferase that degrades mRNA in prokaryotes
and plant chloroplasts. The C-terminal region of PNPase
contains domains homologous to...; Region: PNPase_KH;
cd02393"
/db_xref="CDD:29003"
misc_feature order(164462..164464,164468..164476,164480..164494,
164501..164506,164513..164518,164531..164542)
/gene="pnpA"
/locus_tag="Avi_0175"
/note="putative nucleic acid binding region [nucleotide
binding]; other site"
/db_xref="CDD:29003"
misc_feature 164483..164494
/gene="pnpA"
/locus_tag="Avi_0175"
/note="G-X-X-G motif; other site"
/db_xref="CDD:29003"
misc_feature 164639..164842
/gene="pnpA"
/locus_tag="Avi_0175"
/note="S1_PNPase: Polynucleotide phosphorylase (PNPase),
), S1-like RNA-binding domain. PNPase is a
polyribonucleotide nucleotidyl transferase that degrades
mRNA. It is a trimeric multidomain protein. The C-terminus
contains the S1 domain which binds ssRNA; Region:
S1_PNPase; cd04472"
/db_xref="CDD:88437"
misc_feature order(164663..164665,164687..164689,164717..164719,
164723..164725)
/gene="pnpA"
/locus_tag="Avi_0175"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88437"
misc_feature 164780..164785
/gene="pnpA"
/locus_tag="Avi_0175"
/note="domain interface; other site"
/db_xref="CDD:88437"
gene 164900..164974
/gene="suhB"
/locus_tag="Avi_4510"
/db_xref="GeneID:7388337"
ncRNA 164900..164974
/gene="suhB"
/locus_tag="Avi_4510"
/ncRNA_class="other"
/product="suhB"
/db_xref="GeneID:7388337"
gene 165091..166107
/gene="rsmC"
/locus_tag="Avi_0178"
/db_xref="GeneID:7387984"
CDS 165091..166107
/gene="rsmC"
/locus_tag="Avi_0178"
/codon_start=1
/transl_table=11
/product="ribosomal RNA small subunit methyltransferase"
/protein_id="YP_002548111.1"
/db_xref="GI:222147154"
/db_xref="GeneID:7387984"
/translation="MSRETLKTIFHPFVTEAVALPGEDERFLFLGAEAGFVKPEGFGA
ELTVVQSFRPDFRRLEAARQTPVAVVTGEDYNGALVLAGKHKGLNENRVAEALARVRA
GGVIIVAGAKEDGIQPLRKQIDRLGLEPQSLPKYHGIAVWFTVPEDKAAAIAALASKP
VMVEGRFETYAGQFSHMHADPGSELLVSRLPDDFDGNAADFGAGWGYLSVMLAEKARR
TNRIDLFEANYDALEQAKKNLARNCPHLTARFFWQDLGTESPKEKYDLVIMNPPFHEG
HATEPSIGEAMIKAAADALRGGGDLLMVANRGLAYEPVLAANFRQHGETCRNARYKVL
WAKK"
misc_feature 165220..166104
/gene="rsmC"
/locus_tag="Avi_0178"
/note="16S RNA G1207 methylase RsmC [Translation,
ribosomal structure and biogenesis]; Region: RsmC;
COG2813"
/db_xref="CDD:32642"
misc_feature 165580..166092
/gene="rsmC"
/locus_tag="Avi_0178"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:213141"
gene complement(166176..166970)
/gene="fabI"
/locus_tag="Avi_0179"
/db_xref="GeneID:7388338"
CDS complement(166176..166970)
/gene="fabI"
/locus_tag="Avi_0179"
/note="Catalyzes a key regulatory step in fatty acid
biosynthesis"
/codon_start=1
/transl_table=11
/product="enoyl-(acyl carrier protein) reductase"
/protein_id="YP_002548112.1"
/db_xref="GI:222147155"
/db_xref="GeneID:7388338"
/translation="MQGKRGLIMGVANNHSIAWGISQALASAGAELAFTYQGEALGKR
VKPLAAQLGSDFVLPCDVEDLASVDATFAALKERWGKLDFVVHAIGFSDKNELKGLYA
DTSRENFTRTMVISCFSFTEIARRAADLMPDGGSLLTLTYGGSTRVIPNYNVMGVAKA
ALESSMRYLASDYGPRGIRVNALSAGPVRTLAGAGISDARAIFSWNQKNAPLRRTPTI
EDIGGSALYLLSDLSRCVTGEIHYVDGGYNITSLPALGVLRSNDAE"
misc_feature complement(166179..166970)
/gene="fabI"
/locus_tag="Avi_0179"
/note="enoyl-(acyl carrier protein) reductase;
Provisional; Region: PRK06505"
/db_xref="CDD:180596"
misc_feature complement(166224..166964)
/gene="fabI"
/locus_tag="Avi_0179"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature complement(order(166392..166403,166407..166418,
166494..166496,166515..166517,166545..166553,
166626..166628,166698..166709,166785..166793,
166860..166862,166920..166925,166935..166943))
/gene="fabI"
/locus_tag="Avi_0179"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature complement(order(166224..166229,166233..166271,
166275..166277,166290..166292,166299..166304,
166311..166313,166329..166340,166356..166358,
166365..166367,166446..166451,166455..166472,
166476..166481,166488..166493,166500..166505,
166512..166517,166521..166532,166536..166541,
166587..166589,166596..166598,166608..166610,
166617..166622,166629..166634,166641..166646,
166653..166673,166767..166769,166776..166787,
166890..166892))
/gene="fabI"
/locus_tag="Avi_0179"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(166452..166460,166464..166472,
166476..166481,166488..166493,166500..166505,
166512..166517,166524..166532,166536..166541,
166587..166589,166596..166601,166608..166610,
166617..166622,166629..166634,166641..166646,
166653..166673,166776..166787))
/gene="fabI"
/locus_tag="Avi_0179"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(166374..166376,166383..166385,
166392..166397,166494..166496,166506..166508,
166515..166517,166545..166547,166695..166697,
166701..166703))
/gene="fabI"
/locus_tag="Avi_0179"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature complement(order(166494..166496,166506..166508,
166545..166547,166623..166625))
/gene="fabI"
/locus_tag="Avi_0179"
/note="active site"
/db_xref="CDD:187630"
gene complement(166988..168211)
/gene="fabB"
/locus_tag="Avi_0180"
/db_xref="GeneID:7388339"
CDS complement(166988..168211)
/gene="fabB"
/locus_tag="Avi_0180"
/note="FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes
a condensation reaction in fatty acid biosynthesis:
addition of an acyl acceptor of two carbons from
malonyl-ACP; required for the elongation of short-chain
unsaturated acyl-ACP"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-ACP synthase"
/protein_id="YP_002548113.1"
/db_xref="GI:222147156"
/db_xref="GeneID:7388339"
/translation="MRRVVVTGLGIVSSIGNNAAEVTASLRDARSGISFSPDFAEHGF
KCQVWGQPSLDTTDLVDRRAMRFLSQGGAWNHVAMKQAIADSGLEEKDYSANERTGII
MGSGGPSTRQIVEAADITRQNKSPKRIGPFAVPKAMSSTASATLATWFKIHGVNYSIS
SACSTSAHCIGNAAEMIQWGKQDIMFAGGHEDLDWSMSDLFDAMGAMSTKYNETPALA
SRAYDTNRDGFVIAGGAGVLVLEELEHAKARGAKIYAELTGYGATSDGYDMVAPSGEG
AIRCMRQALSTVKGDVDYINTHGTSTPVGDSKEIGAIRTVFGDKIPPIQSTKSLTGHS
LGAAGVQESIYGLLMMQEGFIGESAHITELDPEFEGVPVVRKRIDNAKIDTVLSNSFG
FGGTNATLVFQRHNG"
misc_feature complement(166991..168211)
/gene="fabB"
/locus_tag="Avi_0180"
/note="3-oxoacyl-(acyl carrier protein) synthase I;
Reviewed; Region: PRK07967"
/db_xref="CDD:181184"
misc_feature complement(167006..168208)
/gene="fabB"
/locus_tag="Avi_0180"
/note="Beta-ketoacyl-acyl carrier protein (ACP) synthase
(KAS), type I and II. KASs are responsible for the
elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen...; Region:
KAS_I_II; cd00834"
/db_xref="CDD:29421"
misc_feature complement(order(167024..167026,167030..167032,
167375..167377,167411..167425,167600..167605,
167612..167617,167675..167677,167684..167689,
167696..167698,167732..167740,167744..167746,
167750..167752,167768..167770,167780..167782,
167792..167794,167810..167812,167846..167851,
167858..167860,167870..167875,167894..167896))
/gene="fabB"
/locus_tag="Avi_0180"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29421"
misc_feature complement(order(167213..167215,167318..167320,
167723..167725))
/gene="fabB"
/locus_tag="Avi_0180"
/note="active site"
/db_xref="CDD:29421"
gene complement(168246..168761)
/gene="fabA"
/locus_tag="Avi_0181"
/db_xref="GeneID:7388340"
CDS complement(168246..168761)
/gene="fabA"
/locus_tag="Avi_0181"
/note="catalyzes the dehydration of
(3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or
3,4-decenoyl-ACP"
/codon_start=1
/transl_table=11
/product="3-hydroxydecanoyl-ACP dehydratase"
/protein_id="YP_002548114.1"
/db_xref="GI:222147157"
/db_xref="GeneID:7388340"
/translation="MNEKQTSYNYDEILACGRGELFGQGNAQLPLPPMLMFNRITDIS
ETGGPHDKGYIRAEFDITSDLWFFPCHFQGDPVMPGCLGLDAMWQLTGFYLGWLGEPG
KGRAISTGEVKFTGMVTPSTKLVEYGIDFKRVMRGRLVLGIADGWMKADGEVIYKATD
LRVGLFKEKAD"
misc_feature complement(168258..168683)
/gene="fabA"
/locus_tag="Avi_0181"
/note="FabA, beta-hydroxydecanoyl-acyl carrier protein
(ACP)-dehydratase: Bacterial protein of the type II, fatty
acid synthase system that binds ACP and catalyzes both
dehydration and isomerization reactions, apparently in the
same active site. The FabA...; Region: FabA; cd01287"
/db_xref="CDD:48032"
misc_feature complement(order(168441..168452,168483..168488,
168495..168500,168507..168509,168675..168683))
/gene="fabA"
/locus_tag="Avi_0181"
/note="active site 1 [active]"
/db_xref="CDD:48032"
misc_feature complement(order(168411..168416,168420..168422,
168426..168452,168507..168509,168519..168521,
168672..168674,168678..168680))
/gene="fabA"
/locus_tag="Avi_0181"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48032"
misc_feature complement(order(168411..168422,168522..168530))
/gene="fabA"
/locus_tag="Avi_0181"
/note="active site 2 [active]"
/db_xref="CDD:48032"
gene 169069..169485
/gene="irr"
/locus_tag="Avi_0183"
/db_xref="GeneID:7386829"
CDS 169069..169485
/gene="irr"
/locus_tag="Avi_0183"
/codon_start=1
/transl_table=11
/product="transcriptional regulator Fur family"
/protein_id="YP_002548115.1"
/db_xref="GI:222147158"
/db_xref="GeneID:7386829"
/translation="MMAQASRDVEAKLRRSGLRPTRQRVALASLLFAKGDRHLTVEEL
HEEAVAADVPVSLATVYNTLHQFTEAGMIRVLAVESNKTYFDTNVSDHHHFFVEGRNE
VLDIPVSNIEIGNLPPPPEGMEISHVDVVIRLRPKA"
misc_feature 169132..169467
/gene="irr"
/locus_tag="Avi_0183"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature order(169180..169182,169324..169326,169345..169347,
169351..169353,169381..169383)
/gene="irr"
/locus_tag="Avi_0183"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature 169234..169278
/gene="irr"
/locus_tag="Avi_0183"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature order(169342..169344,169348..169350,169402..169404,
169450..169452)
/gene="irr"
/locus_tag="Avi_0183"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature order(169357..169359,169360..169362,169405..169410,
169435..169443,169447..169467)
/gene="irr"
/locus_tag="Avi_0183"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
gene complement(169550..170185)
/locus_tag="Avi_0184"
/db_xref="GeneID:7387511"
CDS complement(169550..170185)
/locus_tag="Avi_0184"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548116.1"
/db_xref="GI:222147159"
/db_xref="GeneID:7387511"
/translation="MSLLLYLDYAGVALFAATGALAASRKQLDLIGFLFFATVTGTGG
GTVRDIILGRLPVFWVVNPSYILICCAVGVLVFFTAHLVESRYKLLIWLDAIGLSAYC
VMGAAKGMAATGSPTIAIVTGMMTATLGGVLRDLLANEPSVLLRPEIYITAALIGACV
FTGAFMLAAPLYWASAGGVLAAFMVRGGALYFGWTFPRYGHQAGRHPDDVM"
misc_feature complement(169568..170185)
/locus_tag="Avi_0184"
/note="Predicted membrane protein [Function unknown];
Region: COG2860"
/db_xref="CDD:32687"
misc_feature complement(169934..170176)
/locus_tag="Avi_0184"
/note="UPF0126 domain; Region: UPF0126; pfam03458"
/db_xref="CDD:202644"
misc_feature complement(169685..169918)
/locus_tag="Avi_0184"
/note="UPF0126 domain; Region: UPF0126; pfam03458"
/db_xref="CDD:202644"
gene complement(170468..170989)
/locus_tag="Avi_0189"
/db_xref="GeneID:7387512"
CDS complement(170468..170989)
/locus_tag="Avi_0189"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548117.1"
/db_xref="GI:222147160"
/db_xref="GeneID:7387512"
/translation="MPNPPCCRCFRLFLDDRHEHHAAHPHRHFALRTIGAVAEMRRHF
QHENLVAVTLDEVIAKDLGGGDHQIAAFLDLHIEIIGAAFGIAVGAALAIAGQRAFVD
DRIDNAIIVDIQPGDVVVIELSCLADLTEMILLVDFRVTDQLLLRQGDRGRQGQQQAQ
EQAKKQFHGMNLR"
gene complement(171038..172417)
/locus_tag="Avi_0190"
/db_xref="GeneID:7387513"
CDS complement(171038..172417)
/locus_tag="Avi_0190"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002548118.1"
/db_xref="GI:222147161"
/db_xref="GeneID:7387513"
/translation="MSFDREKAHRQSRVATASGWIGSALEYYDFFIYATAAALVFPQL
FFPSVDPTTAIVASLTTYGVGYVSRPIGAFVLGHMGDVYGRKKMMLTCLFLMGFSTLM
VGLLPTYAQIGIWAPIFLVVLRLIQGFAVAGEISGASSMILEHAPTGRRGFFASFALQ
GVQAGQILAAAVFLPLAHYMEPAAFNSWGWRIPFLLSIFVVIVGFVIRRLVEETPTFV
NASESGAVSKAPIVEAFRHGWADIIRVMCMSLMNVIPTVTTVFGAAYAVQPAYGIGFS
KDVYLWIPVLGNIVAVLVIPFIGGLSDRIGRKPPIIIGSLLSGALSFGYLYAISIHNV
PMAIVMSLLMWGVIYQGYNAVFPSFYPELFQSRIRVSSMAIAQNVGTAITALFPALFT
AVAPPGSLNIPIVIGCWTLAITVISALAALSARETYRISINELGNKTAKPITKDEYDR
MRAQSMAKA"
misc_feature complement(171161..172360)
/locus_tag="Avi_0190"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(171251..172354)
/locus_tag="Avi_0190"
/note="metabolite-proton symporter; Region: 2A0106;
TIGR00883"
/db_xref="CDD:188094"
misc_feature complement(order(171266..171268,171275..171280,
171287..171292,171299..171304,171335..171337,
171344..171349,171359..171361,171368..171373,
171380..171382,171533..171535,171545..171547,
171554..171556,171566..171568,171578..171580,
171617..171619,171626..171631,171638..171643,
171650..171652,171920..171922,171938..171943,
171950..171955,171989..171991,171998..172003,
172010..172015,172022..172027,172187..172192,
172196..172201,172220..172222,172229..172234,
172241..172243,172304..172309,172313..172321,
172328..172330))
/locus_tag="Avi_0190"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(172857..172932)
/locus_tag="Avi_4597"
/db_xref="GeneID:7387514"
tRNA complement(172857..172932)
/locus_tag="Avi_4597"
/product="tRNA-Ala"
/db_xref="GeneID:7387514"
gene complement(173084..173470)
/locus_tag="Avi_0191"
/db_xref="GeneID:7387187"
CDS complement(173084..173470)
/locus_tag="Avi_0191"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548119.1"
/db_xref="GI:222147162"
/db_xref="GeneID:7387187"
/translation="MANAELGTKRTCPDTGKKFYDLNNDPVVSPYTKKSWPLSYFEET
SVAAIMEKAEEEEVAEVDTENTDVELVSLEDADDAAGGDDIPDIGDDDVEIGDDDDDT
FLEADEDDEDDDMSGIIGVTGDDDEV"
misc_feature complement(<173336..173470)
/locus_tag="Avi_0191"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4530"
/db_xref="CDD:34179"
misc_feature complement(<173345..173470)
/locus_tag="Avi_0191"
/note="Protein of unknown function (FYDLN_acid); Region:
FYDLN_acid; pfam09538"
/db_xref="CDD:204267"
gene 173741..174394
/gene="cmk"
/locus_tag="Avi_0193"
/db_xref="GeneID:7387515"
CDS 173741..174394
/gene="cmk"
/locus_tag="Avi_0193"
/note="Catalyzes the formation of (d)CDP from ATP and
(d)CMP"
/codon_start=1
/transl_table=11
/product="cytidylate kinase"
/protein_id="YP_002548120.1"
/db_xref="GI:222147163"
/db_xref="GeneID:7387515"
/translation="MTEVTENTFVIAIDGPAAAGKGTLSRRIADSYGFHHLDTGLTYR
ATAKALLEKSLPLDNEAVAEQVALGLDLSGLDREVLAKHDIGEAASKIAVMPAVRRAL
VEAQRRFSLKAPGAVLDGRDIGTVVCPDAAVKLYVTASPEVRARRRFDEIVAHGGVAD
YPAVFEDVKRRDDRDMGRADSPLKPAEDAHLLDTSEMSIEAAFQAARSLIDAALKNN"
misc_feature 173753..174385
/gene="cmk"
/locus_tag="Avi_0193"
/note="cytidylate kinase; Provisional; Region: cmk;
PRK00023"
/db_xref="CDD:178800"
misc_feature 173768..174325
/gene="cmk"
/locus_tag="Avi_0193"
/note="Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate (CMP)
to produce cytidine diphosphate (CDP), using ATP as the
preferred phosphoryl donor; Region: CMPK; cd02020"
/db_xref="CDD:73296"
misc_feature order(174035..174037,174101..174106,174272..174274)
/gene="cmk"
/locus_tag="Avi_0193"
/note="CMP-binding site; other site"
/db_xref="CDD:73296"
misc_feature order(174251..174253,174263..174265)
/gene="cmk"
/locus_tag="Avi_0193"
/note="The sites determining sugar specificity; other
site"
/db_xref="CDD:73296"
gene 174545..176266
/gene="rpsA"
/locus_tag="Avi_0194"
/db_xref="GeneID:7387516"
CDS 174545..176266
/gene="rpsA"
/locus_tag="Avi_0194"
/note="in Escherichia coli this protein is involved in
binding to the leader sequence of mRNAs and is itself
bound to the 30S subunit; autoregulates expression via a
C-terminal domain; in most gram negative organisms this
protein is composed of 6 repeats of the S1 domain while in
gram positive there are 4 repeats; the S1 nucleic
acid-binding domain is found associated with other
proteins"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S1"
/protein_id="YP_002548121.1"
/db_xref="GI:222147164"
/db_xref="GeneID:7387516"
/translation="MRLGDFMSVSTPTRDDFAALLEESFAKTDLAEGYVAKGIVTAIE
KDVAIVDVGLKVEGRVPLKEFGARAKDGQLKVGDEVEVYVERIENALGEAVLSREKAR
REESWIKLEAKFEAGERVEGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRDVTPLM
HNPQPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYG
AFVDLGGIDGLLHVTDMAWRRVNHPSEILSIGQSVKVQIIRINQETHRISLGMKQLES
DPWDGIAAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKIL
STSQEVDVVVLEVDPSKRRISLGLKQTLENPWQAFAYSHPAGAEVEGEVKNKTEFGLF
IGLEGDVDGMVHLSDLDWNRPGEQVIEEYNKGDVVRAVVLDVDVEKERISLGIKQLGK
DAVGDAAASGDLRKNAVVSCEVIAVNDGGVEVKLVNHEDIVSFIRRADLARDRDDQRP
ERFSVGQVFDARVTNFSKKDRKVMLSIKALEIAEEKEAVAQFGSSDSGASLGDILGAA
LKNRSND"
misc_feature 174557..176254
/gene="rpsA"
/locus_tag="Avi_0194"
/note="30S ribosomal protein S1; Reviewed; Region: rpsA;
PRK06299"
/db_xref="CDD:180520"
misc_feature 174641..174841
/gene="rpsA"
/locus_tag="Avi_0194"
/note="S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_ec1_hs1; cd05687"
/db_xref="CDD:88442"
misc_feature order(174665..174667,174689..174691,174719..174721,
174725..174727)
/gene="rpsA"
/locus_tag="Avi_0194"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88442"
misc_feature 174893..175093
/gene="rpsA"
/locus_tag="Avi_0194"
/note="S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists...; Region:
S1_RPS1_repeat_ec2_hs2; cd04465"
/db_xref="CDD:88430"
misc_feature order(174917..174919,174941..174943,174968..174970,
174974..174976)
/gene="rpsA"
/locus_tag="Avi_0194"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88430"
misc_feature 175151..175354
/gene="rpsA"
/locus_tag="Avi_0194"
/note="S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists of...; Region:
S1_RPS1_repeat_ec3; cd05688"
/db_xref="CDD:88443"
misc_feature order(175178..175180,175202..175204,175229..175231,
175235..175237)
/gene="rpsA"
/locus_tag="Avi_0194"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88443"
misc_feature 175400..175615
/gene="rpsA"
/locus_tag="Avi_0194"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(175433..175435,175457..175459,175487..175489,
175493..175495)
/gene="rpsA"
/locus_tag="Avi_0194"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
misc_feature 175670..175876
/gene="rpsA"
/locus_tag="Avi_0194"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(175694..175696,175718..175720,175748..175750,
175754..175756)
/gene="rpsA"
/locus_tag="Avi_0194"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
misc_feature 175937..176146
/gene="rpsA"
/locus_tag="Avi_0194"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(175961..175963,175985..175987,176021..176023,
176027..176029)
/gene="rpsA"
/locus_tag="Avi_0194"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
gene 176428..177411
/locus_tag="Avi_0196"
/db_xref="GeneID:7387517"
CDS 176428..177411
/locus_tag="Avi_0196"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548122.1"
/db_xref="GI:222147165"
/db_xref="GeneID:7387517"
/translation="MFRTLFASAKRRLDSLNEQEVLALAISSEEDDARIYLAYAERLK
EQYPQSAKVFQDMAEVEHAHRNMLIDMHRQRFGEHIPLIRREHVQGFMTRKPDWLQAQ
LSVDQVREEAEAMERSAYNFYVEAQKHVSDARTRALLGDLAMAEQGHEDVAHMLGEKH
RPEDVQKLEQETAKRQFVLTYVQPGLAGLMDGSVSTLAPIFAAAFATGDTWQTFLVGL
SASVGAGISMGFTEASHDDGKISGRGSPIKRGLACGIMTALGGLGHALPYLIPHFWTA
TATAGVVVFIELWAIAFIQNKYMETPFWRAAMQVVLGGSLVLAAGILIGNG"
misc_feature 176485..176877
/locus_tag="Avi_0196"
/note="Uncharacterized family of ferritin-like proteins
found in archaea and bacteria; Region: Ferritin_like_AB;
cd01045"
/db_xref="CDD:153104"
misc_feature order(176512..176514,176608..176610,176617..176619,
176773..176775,176863..176865,176872..176874)
/locus_tag="Avi_0196"
/note="diiron binding motif [ion binding]; other site"
/db_xref="CDD:153104"
misc_feature 176668..177198
/locus_tag="Avi_0196"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1633"
/db_xref="CDD:31820"
misc_feature 176965..177399
/locus_tag="Avi_0196"
/note="CCC1-related protein family; Region: CCC1_like_1;
cd02437"
/db_xref="CDD:153128"
gene complement(177476..177991)
/locus_tag="Avi_0197"
/db_xref="GeneID:7387518"
CDS complement(177476..177991)
/locus_tag="Avi_0197"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548123.1"
/db_xref="GI:222147166"
/db_xref="GeneID:7387518"
/translation="MVTGGITSQPIGHYEFCLRYKAECQVRSKPAPARQVTEHGWDIV
HAVNMDVNKSITPMTDMDVYGREEWWEYPVDAGDCEDFVLLKRKRLLQAGFSEADLLI
TVVRKADGEGHAVLTLRTSAGDYILDNLVDDVKLWSQTSYTYLKRQASFDTGRWVTIE
SGKDVPVAALK"
misc_feature complement(177485..177991)
/locus_tag="Avi_0197"
/note="Bacterial transglutaminase-like cysteine proteinase
BTLCP; Region: BTLCP; pfam06035"
/db_xref="CDD:147930"
gene complement(178265..179074)
/locus_tag="Avi_0199"
/db_xref="GeneID:7387519"
CDS complement(178265..179074)
/locus_tag="Avi_0199"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548124.1"
/db_xref="GI:222147167"
/db_xref="GeneID:7387519"
/translation="MTNVGRPIETHAITVGQGSDARSIAALVRAPAQDERPTCIWLGG
YRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASGGAFRDGTISRWLEEALAVLDHF
KPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDR
ERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPD
VPYQHALKLVEHLPADDVVLTLVRDGDHRLSRPQDIDRMRNAIRAMIEPRP"
misc_feature complement(178313..178915)
/locus_tag="Avi_0199"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
misc_feature complement(178286..>178801)
/locus_tag="Avi_0199"
/note="Uncharacterized protein family (UPF0227); Region:
UPF0227; cl14886"
/db_xref="CDD:196847"
gene 179359..179814
/gene="infC"
/locus_tag="Avi_0200"
/db_xref="GeneID:7387520"
CDS 179359..179814
/gene="infC"
/locus_tag="Avi_0200"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-3"
/protein_id="YP_002548125.1"
/db_xref="GI:222147168"
/db_xref="GeneID:7387520"
/translation="MIDAEGQNLGAVPTDQALRMAEEAGLDLVEISPNAEPPVCKILD
LGKLKYANQKKAAEARKKQKIVEVKEIKMRPNIDTHDYEVKMKSMSRFFEDGDKVKVT
LKFRGREMAHQELGMKLLMQVKEDTVEVAKVEAEPKLEGRQMMMVLAPK"
misc_feature 179359..179811
/gene="infC"
/locus_tag="Avi_0200"
/note="translation initiation factor IF-3; Region: infC;
TIGR00168"
/db_xref="CDD:129272"
misc_feature <179362..179508
/gene="infC"
/locus_tag="Avi_0200"
/note="Translation initiation factor IF-3, N-terminal
domain; Region: IF3_N; pfam05198"
/db_xref="CDD:191228"
misc_feature 179575..179811
/gene="infC"
/locus_tag="Avi_0200"
/note="Translation initiation factor IF-3, C-terminal
domain; Region: IF3_C; pfam00707"
/db_xref="CDD:201407"
gene 181269..181937
/locus_tag="Avi_0202"
/db_xref="GeneID:7387521"
CDS 181269..181937
/locus_tag="Avi_0202"
/codon_start=1
/transl_table=11
/product="two component response regulator"
/protein_id="YP_002548126.1"
/db_xref="GI:222147169"
/db_xref="GeneID:7387521"
/translation="MRILLAEDDANIGRHVAETLRGEGYEVTLVNKGPDVWEAGEDTG
LGAIILDLGLPGLDGLSILRRWRKDRIQTPVLVLTARGSWMERVDGFDAGADDYLPKP
FRTEELLARLRALLRRAGKTSHTLFSAGRFQVDEAGRTVTFNGALLEVSPLEFRLIQI
LVQNKGRVFSAYEIATQIQGRDDDASKNAVEAMVARIRKKTDASAIETRRGFGYVVPD
ENSC"
misc_feature 181269..181913
/locus_tag="Avi_0202"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 181278..181589
/locus_tag="Avi_0202"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(181287..181292,181419..181421,181443..181445,
181503..181505,181560..181562,181569..181574)
/locus_tag="Avi_0202"
/note="active site"
/db_xref="CDD:29071"
misc_feature 181419..181421
/locus_tag="Avi_0202"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(181428..181433,181437..181445)
/locus_tag="Avi_0202"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 181569..181577
/locus_tag="Avi_0202"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 181647..181913
/locus_tag="Avi_0202"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(181719..181721,181776..181781,181833..181835,
181842..181844,181866..181871,181890..181892,
181905..181907)
/locus_tag="Avi_0202"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 181931..183286
/locus_tag="Avi_0203"
/db_xref="GeneID:7387522"
CDS 181931..183286
/locus_tag="Avi_0203"
/codon_start=1
/transl_table=11
/product="two component sensor kinase"
/protein_id="YP_002548127.1"
/db_xref="GI:222147170"
/db_xref="GeneID:7387522"
/translation="MLRSLRFRLAIGSFLAIGLALMVLWFSVGYLFINYVGQQFKTEM
NVTINIIASRLKVENGKIDIVSPPADPRFSTVSGGRYWQVWTPDGRSLRSRSLWDVEL
PRTGLHQEGPFDFSRAQGPDGEDILLLRSEIKISDEGIDYPVIIYAGFPLANLMEPLD
QHRERSRSVMLITALVLLGAALLQARVVLQPLTRVRNQVSMVRAGQLRVMDDGVPLEV
MPLVEEINLLLTERQYTIEKARSRASDLAHGLKTPLTVLAQMVQHLPSAEREAAFEQI
NLVRQRADRQLQAARLGVEQMQVTDMESLIGKLVKVLDPIARARELAWDVEVEQGLAI
EADAADLAEAIGNILDNATKWASSVIHVRAFGDRDMAMIVIGDDGPGVRPQDRQQVLR
RGEFLDADQGGSGLGLAICADIMTAYGGNLSLDQADIGGLLVTLQFPRHGGRQIPAHP
I"
misc_feature 182507..183253
/locus_tag="Avi_0203"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 182969..183244
/locus_tag="Avi_0203"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(182969..182971,182981..182983,182990..182992,
183053..183055,183059..183061,183065..183067,
183071..183076,183143..183154,183200..183202,
183206..183208,183221..183226,183230..183232)
/locus_tag="Avi_0203"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 182981..182983
/locus_tag="Avi_0203"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(183065..183067,183071..183073,183143..183145,
183149..183151)
/locus_tag="Avi_0203"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 183514..183717
/gene="rpmI"
/locus_tag="Avi_0205"
/db_xref="GeneID:7387523"
CDS 183514..183717
/gene="rpmI"
/locus_tag="Avi_0205"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L35"
/protein_id="YP_002548128.1"
/db_xref="GI:222147171"
/db_xref="GeneID:7387523"
/translation="MPKMKTKSSAKKRFKITASGKVLAAAAGKRHGMIKRSNKFIRNA
RGTMVLAEADGKKVIKNYLPNGL"
misc_feature 183514..183711
/gene="rpmI"
/locus_tag="Avi_0205"
/note="50S ribosomal protein L35; Reviewed; Region: rpmI;
PRK00172"
/db_xref="CDD:178913"
gene 183757..184161
/gene="rplT"
/locus_tag="Avi_0206"
/db_xref="GeneID:7387524"
CDS 183757..184161
/gene="rplT"
/locus_tag="Avi_0206"
/note="binds directly to 23S ribosomal RNA prior to in
vitro assembly of the 50S ribosomal subunit"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L20"
/protein_id="YP_002548129.1"
/db_xref="GI:222147172"
/db_xref="GeneID:7387524"
/translation="MSRVKRGVAAHAKHKKVLKAAKGFYGRRKNTIRAAKAAVDRSKQ
FAYRDRKVNKRNFRALWIQRINAAVRESGLTYGRFIDGLNKAGIEVDRKVLSDMAIHE
PAAFGALVEASKKALSYLKDTGTKNEFETAVK"
misc_feature 183757..184101
/gene="rplT"
/locus_tag="Avi_0206"
/note="ribosomal protein L20; Region: rpl20; CHL00068"
/db_xref="CDD:177008"
misc_feature 183823..184089
/gene="rplT"
/locus_tag="Avi_0206"
/note="Ribosomal protein L20; Region: Ribosomal_L20;
cd07026"
/db_xref="CDD:197305"
misc_feature order(183823..183840,183844..183855,183862..183867,
183877..183882,183889..183933,183937..183945,
183952..183954,183964..183966,183982..183987,
183994..183999,184006..184008,184030..184038)
/gene="rplT"
/locus_tag="Avi_0206"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:197305"
misc_feature order(183862..183864,183874..183876,183883..183888,
183892..183897,183904..183906,184021..184032,
184039..184041,184057..184062,184078..184083)
/gene="rplT"
/locus_tag="Avi_0206"
/note="L21 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
misc_feature order(183925..183927,183934..183939,183946..183948,
183955..183960,183964..183966,184036..184038,
184045..184047,184054..184056)
/gene="rplT"
/locus_tag="Avi_0206"
/note="L13 binding site [polypeptide binding]; other site"
/db_xref="CDD:197305"
gene 184324..185409
/gene="pheS"
/locus_tag="Avi_0208"
/db_xref="GeneID:7387525"
CDS 184324..185409
/gene="pheS"
/locus_tag="Avi_0208"
/note="catalyzes a two-step reaction, first charging a
phenylalanine molecule by linking its carboxyl group to
the alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; forms a heterotetramer of
alpha(2)beta(2); binds two magnesium ions per tetramer;
type 1 subfamily"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase subunit alpha"
/protein_id="YP_002548130.1"
/db_xref="GI:222147173"
/db_xref="GeneID:7387525"
/translation="MSDLESLKTSLLADIAAASDEVGIEAVRLAAMGKKGSVSELLKT
LGSMTPEERQTRGAAINALKNEITEQLTAKKTELKDAAINARLKAETLDVSLPVRSSP
AERGRIHPISQIVDEITAIFADMGFSIAEGPDIETDYYNFTALNFPEGHPAREMHDTF
FLQPDANGERKVLRTHTSPVQVRTMEAQKPPIRIVIPGKTYRQDSDATHSPMFHQVEG
LVIDKTANVGHLRWILEEFCKTFFEVDSVTMRFRPSFFPFTEPSFEVDIQCDRSSGPI
VKFGEGKDWMEILGCGMVHPNVLRAGGLDPDEYQGFAWGMGLDRIAMLKYGMPDLRDF
FNADVRWMSHYGFRPLDVPTLFGGLSV"
misc_feature 184324..185358
/gene="pheS"
/locus_tag="Avi_0208"
/note="phenylalanyl-tRNA synthetase subunit alpha;
Validated; Region: pheS; PRK00488"
/db_xref="CDD:179046"
misc_feature 184369..184587
/gene="pheS"
/locus_tag="Avi_0208"
/note="Aminoacyl tRNA synthetase class II, N-terminal
domain; Region: Phe_tRNA-synt_N; pfam02912"
/db_xref="CDD:111764"
misc_feature 184648..185343
/gene="pheS"
/locus_tag="Avi_0208"
/note="Phenylalanyl-tRNA synthetase (PheRS) alpha chain
catalytic core domain. PheRS belongs to class II
aminoacyl-tRNA synthetases (aaRS) based upon its structure
and the presence of three characteristic sequence motifs.
This domain is primarily responsible...; Region:
PheRS_alpha_core; cd00496"
/db_xref="CDD:29807"
misc_feature order(184648..184650,184657..184659,184666..184671,
184690..184692,184705..184710,184714..184722,
184771..184773,184786..184788,184798..184812,
184822..184824,184873..184875,184894..184902,
184912..184914,184918..184920,184924..184926,
184930..184932,184951..184953,185002..185010,
185014..185019,185080..185082,185101..185109,
185113..185115,185206..185211,185326..185328,
185332..185340)
/gene="pheS"
/locus_tag="Avi_0208"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29807"
misc_feature 184702..184722
/gene="pheS"
/locus_tag="Avi_0208"
/note="motif 1; other site"
/db_xref="CDD:29807"
misc_feature order(184786..184794,184849..184851,184855..184857,
184864..184866,184927..184929,184933..184935,
184945..184953,184960..184962,184966..184968,
184972..184974,185089..185091,185095..185100,
185182..185199,185263..185274,185281..185283,
185314..185316)
/gene="pheS"
/locus_tag="Avi_0208"
/note="active site"
/db_xref="CDD:29807"
misc_feature 184924..184935
/gene="pheS"
/locus_tag="Avi_0208"
/note="motif 2; other site"
/db_xref="CDD:29807"
misc_feature 185266..185283
/gene="pheS"
/locus_tag="Avi_0208"
/note="motif 3; other site"
/db_xref="CDD:29807"
gene 185825..188248
/gene="pheT"
/locus_tag="Avi_0209"
/db_xref="GeneID:7387526"
CDS 185825..188248
/gene="pheT"
/locus_tag="Avi_0209"
/note="catalyzes a two-step reaction, first charging a
phenylalanine molecule by linking its carboxyl group to
the alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA; forms a tetramer of
alpha(2)beta(2); binds two magnesium ions per tetramer;
type 2 subfamily"
/codon_start=1
/transl_table=11
/product="phenylalanyl-tRNA synthetase subunit beta"
/protein_id="YP_002548131.1"
/db_xref="GI:222147174"
/db_xref="GeneID:7387526"
/translation="MKFTLSWLKDHLDTDATLDQVCERLTAIGLEVEDVDDKAAYKPF
VIAKILAAEKHPSADRLKVLSVDAGDGKPVQVVCGAPNARAGLIGAFGRPGMYVPGLD
VTLAVGNIRGVESHGMMCSEKELNMSDNHDGIIDLPEDAPVGTSFAAYAGIDDPMIEI
NLTPNRPDCTSIFGIARDLAASGLGTLKQPKAPSFAVEGETSVEVKLELDDAKLCPGF
AYRLVHGVKNGPSPVWMQKRLIAIGLRPISALVDVTNYMTFDQGRPMHVFDADKVKGV
LTVRRAKDGEEILALDTRTYKLTPNTVVIADDNGLESIGGIMGGEHSGCDENTSNVLI
ESALWDPINIAKSGRSLGIITDARYRFERGVDPEYMVPGLERTTELVLEMCGGKAASA
KVVGYQGHTKKVVDFPFSEVKRLTGLNVSTDESRTILTGLGFEVSGEGETVKVAVPSW
RPDVDGKADLVEEVMRMHGVDKITPEPLPSMGAVNTKILTTLQIRTRTAKRALASRGM
MEAVTWSFISAEQAALFGGGKPELKLVNPIAADMSDMRPSLLPGLLTAAQRNADRGFG
DVAIFEVSGTYEGDTPEGQRRVAGGVRRGTASLSGAGRMWSNATKGGGKPVDVYDAKA
DALAVLEACGLPMGNVQIEQGGPEWYHPGRSGTIKMGPKVVLGYFGEFHPKTLAALDV
SGTLCGFEIYLDAMQEPKKKATRTKPALDLSPLQMVKRDFAFVVERSVEAGAIIKAAT
SADRKLITGVNVFDVFEGASVGEGKKSVAIEVLIQPSDKTLTDEDFDALTKKIVGNVE
KTTGGALRA"
misc_feature 185825..188245
/gene="pheT"
/locus_tag="Avi_0209"
/note="phenylalanyl-tRNA synthetase subunit beta;
Reviewed; Region: pheT; PRK00629"
/db_xref="CDD:179078"
misc_feature 185954..186265
/gene="pheT"
/locus_tag="Avi_0209"
/note="tRNA-binding-domain-containing prokaryotic
phenylalanly tRNA synthetase (PheRS) beta chain. PheRS
aminoacylate phenylalanine transfer RNAs (tRNAphe).
PheRSs belong structurally to class II aminoacyl tRNA
synthetases (aaRSs) but, as they aminoacylate...; Region:
tRNA_bind_bactPheRS; cd02796"
/db_xref="CDD:48399"
misc_feature order(186002..186004,186041..186043,186104..186106,
186146..186148,186167..186169,186176..186178)
/gene="pheT"
/locus_tag="Avi_0209"
/note="putative tRNA-binding site [nucleotide binding];
other site"
/db_xref="CDD:48399"
misc_feature 186506..186982
/gene="pheT"
/locus_tag="Avi_0209"
/note="B3/4 domain; Region: B3_4; pfam03483"
/db_xref="CDD:202662"
misc_feature 187031..187231
/gene="pheT"
/locus_tag="Avi_0209"
/note="tRNA synthetase B5 domain; Region: B5; smart00874"
/db_xref="CDD:197942"
misc_feature 187298..187912
/gene="pheT"
/locus_tag="Avi_0209"
/note="Phenylalanyl-tRNA synthetase (PheRS) beta chain
core domain. PheRS belongs to class II aminoacyl-tRNA
synthetases (aaRS) based upon its structure. While class
II aaRSs generally aminoacylate the 3'-OH ribose of the
appropriate tRNA, PheRS is an...; Region:
PheRS_beta_core; cd00769"
/db_xref="CDD:29814"
misc_feature order(187301..187306,187325..187327,187334..187336,
187346..187348,187352..187354,187358..187366,
187418..187429,187460..187462,187502..187504,
187532..187534,187547..187549,187553..187555,
187559..187561,187601..187603,187697..187699)
/gene="pheT"
/locus_tag="Avi_0209"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29814"
misc_feature 187346..187366
/gene="pheT"
/locus_tag="Avi_0209"
/note="motif 1; other site"
/db_xref="CDD:29814"
misc_feature 187478..187489
/gene="pheT"
/locus_tag="Avi_0209"
/note="motif 3; other site"
/db_xref="CDD:29814"
misc_feature 187553..187561
/gene="pheT"
/locus_tag="Avi_0209"
/note="motif 2; other site"
/db_xref="CDD:29814"
misc_feature 187961..188242
/gene="pheT"
/locus_tag="Avi_0209"
/note="Ferredoxin-fold anticodon binding domain; Region:
FDX-ACB; smart00896"
/db_xref="CDD:197964"
gene complement(188499..188942)
/locus_tag="Avi_0210"
/db_xref="GeneID:7387527"
CDS complement(188499..188942)
/locus_tag="Avi_0210"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548132.1"
/db_xref="GI:222147175"
/db_xref="GeneID:7387527"
/translation="MSGFSVRRRRMPLFRNALAGVAFVLVGSLPAVASATMPFAVDPL
SGNPSRVIDIRYVCDVYGCYDRPDYGRPPPPPPGYYRPVPPPPPPGYYRPAPPPPGYY
RPAPPPRVSNRHVRWCMDRYRSYDPQTNRYIAGDGRMRVCRSPFR"
misc_feature complement(188514..188606)
/locus_tag="Avi_0210"
/note="BA14K-like protein; Region: BA14K; pfam07886"
/db_xref="CDD:203793"
gene 189306..189392
/locus_tag="Avi_4554"
/db_xref="GeneID:7387528"
tRNA 189306..189392
/locus_tag="Avi_4554"
/product="tRNA-Leu"
/db_xref="GeneID:7387528"
gene complement(189489..189866)
/locus_tag="Avi_0211"
/db_xref="GeneID:7387994"
CDS complement(189489..189866)
/locus_tag="Avi_0211"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548133.1"
/db_xref="GI:222147176"
/db_xref="GeneID:7387994"
/translation="MQNRAARWTAALVAAGLTMTGPVMADQNKKPALDNWSQPLKGYK
DLPGVKTQAEIDRQNLQPSYRCQTETVLMQGRGTRDFHFLGSGMPRTVYRCTTDEGIT
YTGSEPPRTGAWLPGINPRDVGE"
gene complement(190237..191217)
/gene="ctpI"
/locus_tag="Avi_0212"
/db_xref="GeneID:7387529"
CDS complement(190237..191217)
/gene="ctpI"
/locus_tag="Avi_0212"
/codon_start=1
/transl_table=11
/product="component of type IV pilus"
/protein_id="YP_002548134.1"
/db_xref="GI:222147177"
/db_xref="GeneID:7387529"
/translation="MSADLAATLTNPTLLIAVLVAIAVFATLYTLISPLLERSDLNKR
MKAVSSERELIRARERARMNSEGGRGSLRNTDNSSARKIVERFNLRKALVDDKTMDRL
KTAGLRSQNALNMFLTARFLLPFLFLALATTWIFALHNMQSRPFAVRFLAAVVAGYVG
FYLPNIYISNRITKRQHSIRRAWPDALDLMLICVESGMSMEAAMRRVADEMASQSPAL
AEEMVLTTAELSFLQDRRTAYENLGNRTQLEIVKSVCQALIQAERYGTPIGQALRVLA
QEGRDERMNAAEKKAAALPPKLTVPMILFFLPVLVAVILGPAGIRVSDRF"
misc_feature complement(190240..191145)
/gene="ctpI"
/locus_tag="Avi_0212"
/note="Flp pilus assembly protein TadC [Cell motility and
secretion / Intracellular trafficking and secretion];
Region: TadC; COG2064"
/db_xref="CDD:32247"
misc_feature complement(<190369..>190767)
/gene="ctpI"
/locus_tag="Avi_0212"
/note="Flp pilus assembly protein TadB [Intracellular
trafficking and secretion]; Region: TadB; COG4965"
/db_xref="CDD:34572"
gene complement(191228..192232)
/gene="ctpH"
/locus_tag="Avi_0213"
/db_xref="GeneID:7387530"
CDS complement(191228..192232)
/gene="ctpH"
/locus_tag="Avi_0213"
/codon_start=1
/transl_table=11
/product="component of type IV pilus"
/protein_id="YP_002548135.1"
/db_xref="GI:222147178"
/db_xref="GeneID:7387530"
/translation="MTINVLAIVLLAALAAGSLAYVLLFSRVQADKKTATRLARVKNA
EADTAKKQVARDRVQELSKRRKSVQDTLKEIERKQNEKNKKISSQSLKQRLGQTGLDV
SLIQFSIASTTLGLVFFCLCFVLGMSLFVSLGIAFTAGAGLPRWIVSFLIRRRQEKFL
TEFPNALDVMVRSIKSGLPLNDALRMIAVDAQEPVKTEFRRVVDAQQLGITVPEACGR
MFNSMPLQEVSFFAIVIAIQSQAGGNLSEALSNLSKVLRERRKMKAKVSALSMEAKAS
AVIIGALPFIVAFLVYISSPAYIMVLFTDPRGHMILGFSAFWMSIGIFVMRNMINFDI
"
misc_feature complement(191231..192139)
/gene="ctpH"
/locus_tag="Avi_0213"
/note="Flp pilus assembly protein TadB [Intracellular
trafficking and secretion]; Region: TadB; COG4965"
/db_xref="CDD:34572"
misc_feature complement(191354..191737)
/gene="ctpH"
/locus_tag="Avi_0213"
/note="Type II secretion system (T2SS), protein F; Region:
T2SF; pfam00482"
/db_xref="CDD:201255"
gene complement(192236..193714)
/gene="ctpG"
/locus_tag="Avi_0214"
/db_xref="GeneID:7387531"
CDS complement(192236..193714)
/gene="ctpG"
/locus_tag="Avi_0214"
/codon_start=1
/transl_table=11
/product="component of type IV pilus"
/protein_id="YP_002548136.1"
/db_xref="GI:222147179"
/db_xref="GeneID:7387531"
/translation="MFGKRGNEGSVKSGSGTAVPVSALSSPGMPASVSSSGRIEPGRA
EPPRPAAPADPAQRRRQNRTEDYYDTKSQVFSALIDTIDLSQLAKLDAESAREEIRDI
VNDIISIKNFAMSISEQEELLDDICNDVLGYGPLEPLLARDDISDIMVNGAGQTFIEV
GGKTIESEIRFRDNSQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPLSI
DGPALTIRKFKKDKLNLDQLVKFGAITPEGAQVLQIIGRVRCNVVISGGTGSGKTTLL
NCLTRYIDADERVITCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMR
PERIIVGEVRGSEVFDLLQAMNTGHDGSMGTIHANTPRECLSRMESMIAMGGYSLPAK
TVREIISGSIDIIIQAARLRDGTRRITHITEVVGMEGDVIITQDLMRFEMDGEDLTGK
IIGRHISTGIGKPHFWERARYYNEERRLAAALDAMEQKTGVV"
misc_feature complement(192377..193456)
/gene="ctpG"
/locus_tag="Avi_0214"
/note="Flp pilus assembly protein, ATPase CpaF
[Intracellular trafficking and secretion]; Region: CpaF;
COG4962"
/db_xref="CDD:34569"
misc_feature complement(192455..193012)
/gene="ctpG"
/locus_tag="Avi_0214"
/note="Type IV secretory pathway component VirB11, and
related ATPases. The homohexamer, VirB11 is one of eleven
Vir proteins, which are required for T-pilus biogenesis
and virulence in the transfer of T-DNA from the Ti
(tumor-inducing) plasmid of bacterial to...; Region:
VirB11-like_ATPase; cd01130"
/db_xref="CDD:29996"
misc_feature complement(order(192476..192478,192893..192910,
193001..193003))
/gene="ctpG"
/locus_tag="Avi_0214"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29996"
misc_feature complement(order(192896..192904,192914..192919))
/gene="ctpG"
/locus_tag="Avi_0214"
/note="Walker A motif; other site"
/db_xref="CDD:29996"
misc_feature complement(order(192485..192487,192587..192589,
192596..192598,192608..192616,192644..192649,
192656..192658,192668..192670,192707..192709,
192713..192721,192788..192793,192797..192808,
192827..192829,192851..192853,192908..192913))
/gene="ctpG"
/locus_tag="Avi_0214"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:29996"
misc_feature complement(192689..192706)
/gene="ctpG"
/locus_tag="Avi_0214"
/note="Walker B motif; other site"
/db_xref="CDD:29996"
gene complement(193764..195050)
/gene="ctpF"
/locus_tag="Avi_0215"
/db_xref="GeneID:7387532"
CDS complement(193764..195050)
/gene="ctpF"
/locus_tag="Avi_0215"
/codon_start=1
/transl_table=11
/product="component of type IV pilus"
/protein_id="YP_002548137.1"
/db_xref="GI:222147180"
/db_xref="GeneID:7387532"
/translation="MNTIKYDIAGSKEDGLAAEPVRTGNLEQLRPLPRISVHAFCISD
SVLAVMEEAARDRRMAKVSMRVTSGGISAAVNMFAGAPTPNLVILETDAKPENLLSEL
APLADVCDPSTRVIVVGRYNDIALYRELMRNGVSDYIVAPVSMADVIGALSSIFIDPD
AEPLGRSIAFIGAKGGVGSSTIAHNAAFMIASLFSSETILADLDLPYGTANIDFDQDP
AQGVAEAVFAPERLDEVFLDRLLTSCSQNLSLLAAPSLLDRAYDFERGAFLPLLETLQ
RSAPVAVLDLPHSWNEWTLALLSEVDEIVLTCVPDLANLRNVKNLLDALKRLRPNDKA
PHLILNQAGMPKRPEISPSDFFEPLDMQPAAIIPFDIQLFGNAANSGRMIAEIDAKSP
TAETFSQLAHLITGRVSIKKPKKAGLSTIFAMLARK"
misc_feature complement(194103..194555)
/gene="ctpF"
/locus_tag="Avi_0215"
/note="AAA domain; Region: AAA_31; pfam13614"
/db_xref="CDD:205792"
misc_feature complement(<194340..194549)
/gene="ctpF"
/locus_tag="Avi_0215"
/note="This protein family consists of proteins similar to
the cpaE protein of the Caulobacter pilus assembly and the
orf4 protein of Actinobacillus pilus formation gene
cluster. The function of these proteins are unkown. The
Caulobacter pilus assembly contains...; Region: CpaE_like;
cd03111"
/db_xref="CDD:73340"
misc_feature complement(194028..>194228)
/gene="ctpF"
/locus_tag="Avi_0215"
/note="This protein family consists of proteins similar to
the cpaE protein of the Caulobacter pilus assembly and the
orf4 protein of Actinobacillus pilus formation gene
cluster. The function of these proteins are unkown. The
Caulobacter pilus assembly contains...; Region: CpaE_like;
cd03111"
/db_xref="CDD:73340"
gene complement(195077..195667)
/gene="ctpE"
/locus_tag="Avi_0216"
/db_xref="GeneID:7387533"
CDS complement(195077..195667)
/gene="ctpE"
/locus_tag="Avi_0216"
/codon_start=1
/transl_table=11
/product="component of type IV pilus"
/protein_id="YP_002548138.1"
/db_xref="GI:222147181"
/db_xref="GeneID:7387533"
/translation="MSTGSIPDDYRTRHPIIVTDVEHSLDLPVAQGSSRLTIGMSDAV
TGFAQDYRNASTGYVQILVPQGSPNTMAASSIARQVRNLLVSKGIAAPKIVERPYRAG
ATGDAAPIRLSYVATTAVAGPCGQWPEDLSNDTAQNKNWQNFGCASQANLAAQVASPT
DLIAPRGMTPIDAERRSTVIDNYRDGKDTSTTTSTD"
misc_feature complement(195110..195667)
/gene="ctpE"
/locus_tag="Avi_0216"
/note="Type IV pili component [Cell motility and
secretion]; Region: COG5461"
/db_xref="CDD:35020"
misc_feature complement(195110..195664)
/gene="ctpE"
/locus_tag="Avi_0216"
/note="Pilus biogenesis CpaD protein (pilus_cpaD); Region:
Pilus_CpaD; pfam09476"
/db_xref="CDD:150221"
gene complement(195781..197358)
/gene="ctpD"
/locus_tag="Avi_0217"
/db_xref="GeneID:7387534"
CDS complement(195781..197358)
/gene="ctpD"
/locus_tag="Avi_0217"
/codon_start=1
/transl_table=11
/product="component of type IV pilus"
/protein_id="YP_002548139.1"
/db_xref="GI:222147182"
/db_xref="GeneID:7387534"
/translation="MNGRFSMRLSSARLFRMMITGSLSLGLSISGLPGENMLVWRADA
LAAGAQSLVRIAQTGPGVRRDLKLGLNKAIVVDLPEDAHDILVADPELADAVTRTSRR
IYLFGKKVGQTNIFIFGADGREIVSLDLQIERDIEGLQTNLSRFIPESNIKVEIISDN
VVLSGTVRTPQDSSRAVSLAKAFLQGGEATTRGETATSNSSGDGAVAIYAEDRQTSQI
VNMLTIEGEDQVTLKVTVAEVSRQVLKQLGVSASATDGTSGISYANPSNLGNSVDVGG
TATISKTFGSFGISAYVNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGEYRLAAGQEI
STDSTTGQKTVSRTTSTVDYGIQLNFRPVVLSPGRISLAIETNVSEPTYEGSVVEGNS
DSSIPGSTYLSIRKREASTTVELPSGGSIVIAGLVQDNVRQAMSGLPGISKIPIFGTL
FRSKDFVRNETELVIIATPYLVRPVTRNALARPDDNFNPAGDGAMYFLNRVNKVYGRK
EATANGAYHGTVGYIYK"
misc_feature complement(195784..197250)
/gene="ctpD"
/locus_tag="Avi_0217"
/note="Flp pilus assembly protein, secretin CpaC
[Intracellular trafficking and secretion]; Region: CpaC;
COG4964"
/db_xref="CDD:34571"
misc_feature complement(196960..197169)
/gene="ctpD"
/locus_tag="Avi_0217"
/note="Pilus formation protein N terminal region; Region:
T2SS-T3SS_pil_N; pfam13629"
/db_xref="CDD:205806"
misc_feature complement(<196810..196926)
/gene="ctpD"
/locus_tag="Avi_0217"
/note="BON domain; Region: BON; pfam04972"
/db_xref="CDD:203137"
misc_feature complement(195940..196476)
/gene="ctpD"
/locus_tag="Avi_0217"
/note="Bacterial type II and III secretion system protein;
Region: Secretin; pfam00263"
/db_xref="CDD:201120"
gene complement(197355..198164)
/gene="ctpC"
/locus_tag="Avi_0218"
/db_xref="GeneID:7387535"
CDS complement(197355..198164)
/gene="ctpC"
/locus_tag="Avi_0218"
/codon_start=1
/transl_table=11
/product="component of type IV pilus"
/protein_id="YP_002548140.1"
/db_xref="GI:222147183"
/db_xref="GeneID:7387535"
/translation="MKPARILILFVAVAAAGLAGLLAMGLSGQKRVVVQQSEPVVTKE
PTTKVLIAAASLPVGARLTDKAMRWMDWPKTDLVDGFVTEENRPQALSDLAGLVVRLP
IFEGEPIRIEKIADASSRTLSALLPAGKRAISTEISVATGAGGFILPNDRVDVIMVRK
GDNDNHLTETVLSNVRVLAIDQQIEEKNDGTRSVIGTTATLELTPEQTKVLTVAQQMA
ERLSLALRSVADAQEQDNSSASYLLSGDSGGPQVQVIKSGQIVKSAGAAKQ"
misc_feature complement(197835..198023)
/gene="ctpC"
/locus_tag="Avi_0218"
/note="SAF domains of the flagella basal body P-ring
formation protein FlgA and the flp pilus assembly CpaB;
Region: SAF_CpaB_FlgA_like; cd11614"
/db_xref="CDD:212159"
gene complement(198275..198793)
/gene="ctpB"
/locus_tag="Avi_0221"
/db_xref="GeneID:7387536"
CDS complement(198275..198793)
/gene="ctpB"
/locus_tag="Avi_0221"
/codon_start=1
/transl_table=11
/product="component of type IV pilus prepilin peptidase"
/protein_id="YP_002548141.1"
/db_xref="GI:222147184"
/db_xref="GeneID:7387536"
/translation="MLAVTLSLIMPLCLALAAFTDLFEMKIPNAIPLVLLIGFAALAL
VLGLPIGLAGLHLTAGLIVFFGCFTLFAVNVMGGGDAKLLTAAAVWYGFNISLVEFLI
EVAMFGGVLTLMILALRSQANTVMALGLRLPRSLIVEKKIPYGIAIAIGGFCSFLSAP
VVTLALATVSPK"
misc_feature complement(198296..198793)
/gene="ctpB"
/locus_tag="Avi_0221"
/note="Flp pilus assembly protein, protease CpaA
[Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion];
Region: CpaA; COG4960"
/db_xref="CDD:34567"
gene complement(198997..199182)
/gene="ctpA"
/locus_tag="Avi_0222"
/db_xref="GeneID:7387537"
CDS complement(198997..199182)
/gene="ctpA"
/locus_tag="Avi_0222"
/codon_start=1
/transl_table=11
/product="component of type 4 pilus pilin subunit protein"
/protein_id="YP_002548142.1"
/db_xref="GI:222147185"
/db_xref="GeneID:7387537"
/translation="MSKIFSRFMKDESGATAIEYGLIAALISVALVAGATTLGTSIGN
TFNNLTTQMNKGADATK"
misc_feature complement(199012..199182)
/gene="ctpA"
/locus_tag="Avi_0222"
/note="Flp pilus assembly protein, pilin Flp
[Intracellular trafficking and secretion]; Region: Flp;
COG3847"
/db_xref="CDD:33638"
gene complement(199370..199555)
/gene="ctpA"
/locus_tag="Avi_0223"
/db_xref="GeneID:7387538"
CDS complement(199370..199555)
/gene="ctpA"
/locus_tag="Avi_0223"
/codon_start=1
/transl_table=11
/product="component of type 4 pilus pilin subunit protein"
/protein_id="YP_002548143.1"
/db_xref="GI:222147186"
/db_xref="GeneID:7387538"
/translation="MSKIFARFMKDESGATAIEYGLIAALISVALVAGATSLGSSLNN
TFTNLTTQMNKAATASK"
misc_feature complement(<199496..199555)
/gene="ctpA"
/locus_tag="Avi_0223"
/note="Flp/Fap pilin component; Region: Flp_Fap; cl01585"
/db_xref="CDD:207456"
gene 199899..200378
/gene="pilQ"
/locus_tag="Avi_0224"
/db_xref="GeneID:7387539"
CDS 199899..200378
/gene="pilQ"
/locus_tag="Avi_0224"
/codon_start=1
/transl_table=11
/product="pilus subunit transmembrane protein"
/protein_id="YP_002548144.1"
/db_xref="GI:222147187"
/db_xref="GeneID:7387539"
/translation="MVLICTREMFSMALPMLFRCCFAFLLAGMATVPGTAHAEDPLLR
VVMNQARILKLDRPVSKVIIGNEKVADATVADPKTIVLTGRSFGTTNLVLLDSQGNAI
FDERILVSIDEANTVRLYKQTQRTVLSCTPSCEQHSQSGNSTGDASSSNSASSGTGQ"
misc_feature 200025..200228
/gene="pilQ"
/locus_tag="Avi_0224"
/note="Pilus formation protein N terminal region; Region:
T2SS-T3SS_pil_N; pfam13629"
/db_xref="CDD:205806"
gene 200605..201228
/locus_tag="Avi_0226"
/db_xref="GeneID:7387540"
CDS 200605..201228
/locus_tag="Avi_0226"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548145.1"
/db_xref="GI:222147188"
/db_xref="GeneID:7387540"
/translation="MVFPDGTRDKRDGLWRRWRLVARRLRRSRDGSAAIEFAILAIPY
FLIIFAILETFVAFIAEQTVNAAVDTLGRQLRTGNITYNQARSTDKTATEFRQLFCNE
ISFLLTCDAAEVATPNRLWLDVRTYTAFSAMPTTIATTSGSLDTSSFAFTPGGASSIN
MLRAFYYWPVTTDLVRPYIATIHRPGVSSNSDYLIVSTLAFQNENYP"
misc_feature 200692..201225
/locus_tag="Avi_0226"
/note="Flp pilus assembly protein TadG [Intracellular
trafficking and secretion]; Region: TadG; COG4961"
/db_xref="CDD:34568"
misc_feature 200695..200823
/locus_tag="Avi_0226"
/note="TadE-like protein; Region: TadE; pfam07811"
/db_xref="CDD:203769"
gene 201225..201809
/locus_tag="Avi_0228"
/db_xref="GeneID:7387541"
CDS 201225..201809
/locus_tag="Avi_0228"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548146.1"
/db_xref="GI:222147189"
/db_xref="GeneID:7387541"
/translation="MRSKPALILLLCRPFRLLALDRSGVGAVEFALIVPLLLVLYLGA
FELTMALSVSQRATTSAGAIADIVARKQKTVDKTFLANMPDVLKAMFAPTATTGYTLK
ITGIKVDSNVKATIAWSWAQDGSKPYATGATVTLPSGMAAANAFFVHAELTIPHELVT
YLPGFTGSSVSTITIARDYYFRQRENGEIACSDC"
misc_feature 201285..201806
/locus_tag="Avi_0228"
/note="Flp pilus assembly protein TadG [Intracellular
trafficking and secretion]; Region: TadG; COG4961"
/db_xref="CDD:34568"
gene 201958..203178
/gene="deoB"
/locus_tag="Avi_0229"
/db_xref="GeneID:7387542"
CDS 201958..203178
/gene="deoB"
/locus_tag="Avi_0229"
/note="catalyzes the transfer of phosphate between the C1
and C5 carbons of pentose"
/codon_start=1
/transl_table=11
/product="phosphopentomutase"
/protein_id="YP_002548147.1"
/db_xref="GI:222147190"
/db_xref="GeneID:7387542"
/translation="MARAFLFVLDSFGVGGAPDAPAYGDDGADTLGHIAEFCAAGAGD
RDGLRAGPLMLPNLSALGLLQIASLASGSLPAGMALPERVFGLYGAANEISRGKDTPS
GHWEIAGTPVMFDWGYFPQEGDAFPADLVADICKRADLPGILGNCHASGTDILARLGE
EHCRTGQPICYTSSDSVFQIAAHEHVFGLERLLRLCEIVRELLTPYRIGRVIARPFIG
NSASNFQRTGNRRDYSVPPPEPTLLDRLSEAGRTVHAIGKIGDIFAHQGTGRDIKANG
NAALMEATLAVMDEAADGDLVFTNFVDFDMLYGHRRDVPGYAAALEAFDLWLPDVYRK
LIPGDMVILTADHGCDPTWRGTDHTRERVPIMAFGPGIRARSIGIRDTYADIGETIAA
HLGIAPGRHGMSFL"
misc_feature 201958..203175
/gene="deoB"
/locus_tag="Avi_0229"
/note="phosphopentomutase; Provisional; Region: PRK05362"
/db_xref="CDD:180038"
misc_feature 201961..203172
/gene="deoB"
/locus_tag="Avi_0229"
/note="Metalloenzyme superfamily; Region: Metalloenzyme;
pfam01676"
/db_xref="CDD:201916"
gene 203175..204173
/gene="add"
/locus_tag="Avi_0230"
/db_xref="GeneID:7387543"
CDS 203175..204173
/gene="add"
/locus_tag="Avi_0230"
/note="catalyzes the formation of inosine from adenosine"
/codon_start=1
/transl_table=11
/product="adenosine deaminase"
/protein_id="YP_002548148.1"
/db_xref="GI:222147191"
/db_xref="GeneID:7387543"
/translation="MTASLLKAELHCHIEGAAPPALVAAQAEKYGIDASSFIRNGSYV
WEDFTSFIAAYDFVASVFRTEEDFAALAEAYLIELAGVNTIYSELFVSPDHGEAVGLS
AEAYIEGLAEGIVAARIKTGIECRMVIIGERHLGPENVLRRAKWLADYHHPLITGFNM
AGEERMNRVADYAPAFDIAREAGYGITIHAGELCGAFSVRDALDLVRPSRIGHGVRAI
EDADLVQRLADEGVVLEVCPASNIALKVFEDYASHPMRDLTDAGVRVCINSDDPPFFA
TSLANDYAIAASMGFSDVEIDAMTRTAIEAAFVDEATRQNLLQRLQAAGSGDEAAI"
misc_feature 203175..204155
/gene="add"
/locus_tag="Avi_0230"
/note="adenosine deaminase; Provisional; Region: PRK09358"
/db_xref="CDD:181797"
misc_feature 203175..204149
/gene="add"
/locus_tag="Avi_0230"
/note="Adenosine deaminase [Nucleotide transport and
metabolism]; Region: Add; COG1816"
/db_xref="CDD:32001"
misc_feature order(203205..203207,203211..203213,203739..203741,
203811..203813,203982..203984)
/gene="add"
/locus_tag="Avi_0230"
/note="active site"
/db_xref="CDD:30035"
gene 204258..204887
/gene="upp"
/locus_tag="Avi_0231"
/db_xref="GeneID:7387544"
CDS 204258..204887
/gene="upp"
/locus_tag="Avi_0231"
/note="Catalyzes the formation of uracil and
5-phospho-alpha-D-ribosy 1-diphosphate from UMP and
diphosphate"
/codon_start=1
/transl_table=11
/product="uracil phosphoribosyltransferase"
/protein_id="YP_002548149.1"
/db_xref="GI:222147192"
/db_xref="GeneID:7387544"
/translation="MDGVTVINHPLVQHKLTFMRRKETSTAGFRRLLREISTLLCYEV
TRDLELTVETIETPMVEMEAPVLEGKKLVFASILRAGNGLLEGMLDLVPSARVSHVGV
YRDHETLQAVEYYFKAPESLSERLVIVVDPMLATGNSSIAAVDKLKERGAVNLRFVCL
LAAPEGIKNFREAHPDVHVYTAAIDSHLNEHGYIVPGLGDAGDRMYGTK"
misc_feature 204444..204809
/gene="upp"
/locus_tag="Avi_0231"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(204489..204491,204495..204497,204648..204656,
204660..204674,204744..204746)
/gene="upp"
/locus_tag="Avi_0231"
/note="active site"
/db_xref="CDD:206754"
gene 204983..205504
/locus_tag="Avi_0232"
/db_xref="GeneID:7387545"
CDS 204983..205504
/locus_tag="Avi_0232"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548150.1"
/db_xref="GI:222147193"
/db_xref="GeneID:7387545"
/translation="MLKRVLVFAGLVVVVATVLPRYLQRQMDTIPEAPPTQTVMNATP
APAQGLARALLTANAQGHFVTTFRINGKAVEGMIDTGASSVAINETTARRLGFGASDL
DFKYKVTTANGQTAAAAVMLDRVEVDGVRVQDVKAIVLQDKALSGTLIGMTFLEKLGS
YKVENGQMRLSQR"
misc_feature 205163..205447
/locus_tag="Avi_0232"
/note="Bacterial aspartate proteases, retropepsin-like
protease family; Region: retropepsin_like_bacteria;
cd05483"
/db_xref="CDD:133150"
misc_feature 205217..205225
/locus_tag="Avi_0232"
/note="catalytic motif [active]"
/db_xref="CDD:133150"
misc_feature 205217..205219
/locus_tag="Avi_0232"
/note="Catalytic residue [active]"
/db_xref="CDD:133150"
gene 205644..206273
/gene="rhtB"
/locus_tag="Avi_0233"
/db_xref="GeneID:7387546"
CDS 205644..206273
/gene="rhtB"
/locus_tag="Avi_0233"
/codon_start=1
/transl_table=11
/product="RhtB family transporter"
/protein_id="YP_002548151.1"
/db_xref="GI:222147194"
/db_xref="GeneID:7387546"
/translation="MNPDVLTVLTALGLYAAVVISPGPNFALISKLAMSGARSTAVGA
TFGFAIAATFYAVLTMAGLALVLARVGWLASLIQIAGGCYLVYLGLMAWLSSKPDTMK
QGVSSVEKGSVLRGLRMGMIVNLSNPKGIAFFIGLYAVAVPPETGLLAKLAILVGGFM
IEIIWYSLVTALLSRRQAKAVYDRFGQWVERAIGTALAGFGIRLIAEKI"
misc_feature 205704..206255
/gene="rhtB"
/locus_tag="Avi_0233"
/note="LysE type translocator; Region: LysE; cl00565"
/db_xref="CDD:207111"
gene complement(206429..207064)
/locus_tag="Avi_0235"
/db_xref="GeneID:7387547"
CDS complement(206429..207064)
/locus_tag="Avi_0235"
/note="catalyzes the interconversion of 2-phosphoglycerate
to 3-phosphoglycerate"
/codon_start=1
/transl_table=11
/product="phosphoglyceromutase"
/protein_id="YP_002548152.1"
/db_xref="GI:222147195"
/db_xref="GeneID:7387547"
/translation="MTGTLVLVRHGQSDWNLKNLFTGWRDPDLTDLGVQEANAGGKAL
KDYGIQFDIAFTSDLSRAQKTCGIILDNLGQSGLETIRDQALNERDYGDLSGLNKDDA
RAKWGEEQVHIWRRSYDIPPPGGESLRDTGARVWPYYLTEILPRVLRGEKVLVAAHGN
SLRSLVMVLDKLTKEQILSVNLATGVPMVYKLNADSTVASKDVLGDMSGAH"
misc_feature complement(206453..207055)
/locus_tag="Avi_0235"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature complement(order(206588..206593,206882..206884,
207035..207040))
/locus_tag="Avi_0235"
/note="catalytic core [active]"
/db_xref="CDD:132718"
gene complement(207100..207912)
/gene="dapB"
/locus_tag="Avi_0237"
/db_xref="GeneID:7387548"
CDS complement(207100..207912)
/gene="dapB"
/locus_tag="Avi_0237"
/note="catalyzes the reduction of 2,3-dihydrodipicolinate
to 2,3,4,5-tetrahydrodipicolinate in lysine and
diaminopimelate biosynthesis"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate reductase"
/protein_id="YP_002548153.1"
/db_xref="GI:222147196"
/db_xref="GeneID:7387548"
/translation="MKLVVVGVSGRMGQALVRIICETQGAVLHAAVGRPGSASIGRDA
GDLAGVGPLGVPVTDDALAAFVNADGVIDFTRPETSVEFSALAAQARIVHIIGTTGCS
PADEARFEAAARHARIVKSGNMSLGVNLLSVLVAQAAKALEASGWDIEVLEMHHKHKV
DAPSGTALLLGEAAAKGRGIDLTEKAVKVRDGHTGPREPGSIGFATLRGGSVIGEHSV
LLAGEGEIVTLSHSAGDRSIFARGAVKAALWAQDKKPGLYSMLDVLGLSSPH"
misc_feature complement(207115..207912)
/gene="dapB"
/locus_tag="Avi_0237"
/note="dihydrodipicolinate reductase; Provisional; Region:
PRK00048"
/db_xref="CDD:178822"
misc_feature complement(207541..207912)
/gene="dapB"
/locus_tag="Avi_0237"
/note="Dihydrodipicolinate reductase, N-terminus; Region:
DapB_N; pfam01113"
/db_xref="CDD:144632"
misc_feature complement(207121..207534)
/gene="dapB"
/locus_tag="Avi_0237"
/note="Dihydrodipicolinate reductase, C-terminus; Region:
DapB_C; pfam05173"
/db_xref="CDD:191215"
gene complement(207998..209788)
/locus_tag="Avi_0238"
/db_xref="GeneID:7387549"
CDS complement(207998..209788)
/locus_tag="Avi_0238"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002548154.1"
/db_xref="GI:222147197"
/db_xref="GeneID:7387549"
/translation="MRDTIKTSLPESSESITAVLKRVIAENGRDHVRGYVFAIICLAT
VALTTAFTAWIMETVINEAFANKRADLVWIICVSIFIAFSLRGLASYGQAVALSKIGN
NIVARYQKRLFSHLMTLSMGYFNEARSAHLAAQVSQNVNGIRDVLNLTVTSTARDLLS
LIGLIAVMLAKDWVLTLIVFVVAPPVLYSLRYISKRLRKATTDSVMLNSRVLGAMQES
VQGIAVVKAFTMEEELGRKVEGIIDSAESRANRIARLSERTSPITESFAGLAIAAVIA
YASYRTIAGGMLPGAFFSFIAALLMAYEPAKRLAKLQIQMERAVVNARMIYAILDTQP
HQRDKPGAGELKVSEARIEFKDIHFAYGNGPEILKGVDITAEGGKTTALVGPSGAGKS
TIITLIPRFYDPPRGQILIDGQDIADVTKASLRKHIAYVSQHPYLFEGTIRDNIRYGR
PDANDAEVEEAARLAHAHDFILAQPYGYETPVGENGLTLSGGQRQRLSIARALVRNAP
ILLLDEATSALDTESEAAVQKALDEAMNGRTVVVIAHRLSTVVKADKIVVMQDGRVVE
MGNHRTLTERPEGLYARLNNMQATNGSPSL"
misc_feature complement(208019..209692)
/locus_tag="Avi_0238"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature complement(208883..209626)
/locus_tag="Avi_0238"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:201380"
misc_feature complement(208025..208735)
/locus_tag="Avi_0238"
/note="MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron homeostasis
and one of four ABC transporters expressed in the
mitochondrial inner membrane, the other three being
MDL1(ABC7), MDL2, and ATM1. In fact, the...; Region:
ABC_MTABC3_MDL1_MDL2; cd03249"
/db_xref="CDD:73008"
misc_feature complement(208613..208636)
/locus_tag="Avi_0238"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73008"
misc_feature complement(order(208154..208156,208247..208252,
208490..208492,208610..208618,208622..208627))
/locus_tag="Avi_0238"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73008"
misc_feature complement(208490..208501)
/locus_tag="Avi_0238"
/note="Q-loop/lid; other site"
/db_xref="CDD:73008"
misc_feature complement(208295..208324)
/locus_tag="Avi_0238"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73008"
misc_feature complement(208247..208264)
/locus_tag="Avi_0238"
/note="Walker B; other site"
/db_xref="CDD:73008"
misc_feature complement(208229..208240)
/locus_tag="Avi_0238"
/note="D-loop; other site"
/db_xref="CDD:73008"
misc_feature complement(208148..208168)
/locus_tag="Avi_0238"
/note="H-loop/switch region; other site"
/db_xref="CDD:73008"
gene complement(209893..210915)
/gene="glk"
/locus_tag="Avi_0239"
/db_xref="GeneID:7387550"
CDS complement(209893..210915)
/gene="glk"
/locus_tag="Avi_0239"
/note="catalyzes the conversion of ATP and D-glucose to
ADP and D-glucose 6-phosphate"
/codon_start=1
/transl_table=11
/product="glucokinase"
/protein_id="YP_002548155.1"
/db_xref="GI:222147198"
/db_xref="GeneID:7387550"
/translation="MPKPHDNDHMPFPVLVGDIGGTNARFWILMDAHAAPKEFANIHT
ADFPTIDQAIQDCILDKSGFQPRSAILAVAGPIKDDEIPLTNCPWVIRPKAMIADLGF
DDVLVVNDFEAQALAAASLGRNDREPIGPLTETSLNSRVILGPGTGLGVGGLLYTHHT
WFPVPGEGGHVDIGPRSDRDWQIFPHIERIEGRISGEQILCGRGILHLYNAICAADGI
EPVWTDPADVTQHALKGNDPVCVETMTLFVTYLGRIAGDMALVFMARGGVFLSGGISQ
KIIPLLKSPVFRAAFEDKAPHTEMMKTIPTFVAIHPQAALSGLAAYARTPSSYGVKHE
GRRWQR"
misc_feature complement(209938..210885)
/gene="glk"
/locus_tag="Avi_0239"
/note="glucokinase; Provisional; Region: glk; PRK00292"
/db_xref="CDD:178964"
misc_feature complement(209956..210873)
/gene="glk"
/locus_tag="Avi_0239"
/note="glucokinase, proteobacterial type; Region: glk;
TIGR00749"
/db_xref="CDD:129832"
gene complement(210963..211343)
/gene="mgsA"
/locus_tag="Avi_0240"
/db_xref="GeneID:7387551"
CDS complement(210963..211343)
/gene="mgsA"
/locus_tag="Avi_0240"
/note="catalyzes the formation of methylglyoxal from
glycerone phosphate"
/codon_start=1
/transl_table=11
/product="methylglyoxal synthase"
/protein_id="YP_002548156.1"
/db_xref="GI:222147199"
/db_xref="GeneID:7387551"
/translation="MAERQKIALIAHDKMKDEMAAFARHHQRFLEQWQIVATGTTGAR
VHDACPKLDVLRMKSGPLGGDQQIGAMIAQEEVAMLIFFVDPLTPMPHDVDVKALMRL
AILYDTPMALNRATADRLLPVITE"
misc_feature complement(210981..211328)
/gene="mgsA"
/locus_tag="Avi_0240"
/note="Methylglyoxal synthase catalyzes the enolization of
dihydroxyacetone phosphate (DHAP) to produce
methylglyoxal. The first part of the catalytic mechanism
is believed to be similar to TIM (triosephosphate
isomerase) in that both enzymes utilize DHAP to...;
Region: MGS; cd01422"
/db_xref="CDD:29634"
misc_feature complement(order(211068..211070,211149..211151,
211164..211169,211221..211226,211230..211232,
211296..211298,211314..211316))
/gene="mgsA"
/locus_tag="Avi_0240"
/note="active site"
/db_xref="CDD:29634"
misc_feature complement(order(210987..210989,210996..211007,
211014..211031,211035..211043,211050..211052,
211059..211061,211086..211088,211125..211127,
211143..211148,211158..211163,211167..211172,
211224..211226,211305..211307))
/gene="mgsA"
/locus_tag="Avi_0240"
/note="dimer interfaces [polypeptide binding]; other site"
/db_xref="CDD:29634"
misc_feature complement(order(211068..211070,211149..211151))
/gene="mgsA"
/locus_tag="Avi_0240"
/note="catalytic residues [active]"
/db_xref="CDD:29634"
gene complement(211429..212439)
/gene="mepA"
/locus_tag="Avi_0241"
/db_xref="GeneID:7387552"
CDS complement(211429..212439)
/gene="mepA"
/locus_tag="Avi_0241"
/note="D-alanyl-D-alanine endopeptidase; functions in
hydrolyzing cell wall peptidoglycan; similar to LAS
metallopeptidases; forms a dimer in periplasm"
/codon_start=1
/transl_table=11
/product="penicillin-insensitive murein endopeptidase"
/protein_id="YP_002548157.1"
/db_xref="GI:222147200"
/db_xref="GeneID:7387552"
/translation="MTAGLAVLSLGLDMAIAGPDQPAKIAFPQETLPNAGPVMPYGSY
ARGCMSGAVALPTDGPNWQAMRLSRNRRWGNPAMIQTIEQLSRDAPKIGWPGLLVGDI
AQPRGGPMANGHASHQIGLDADIWLTPMPAKRLTVQQREDLPFTSMILKDKFLTINPQ
TWTPTHARLLMLAASYPQVERLFVNPTIKKKLCESWTGDRTNMGKIRPIYGHDAHFHI
RLSCPPGAAGCKPQAPVAPGDGCDKSLAWWFTKEPWEQKKRDPNAKPPPPPRPLMVSD
LPKACAAVLDAPSVASEKQATFGGVKAYVNPGAAPVKASSATPDDANLPSEDVPSPSP
RP"
misc_feature complement(211561..212439)
/gene="mepA"
/locus_tag="Avi_0241"
/note="Murein endopeptidase [Cell envelope biogenesis,
outer membrane]; Region: MepA; COG3770"
/db_xref="CDD:33565"
misc_feature complement(211576..212439)
/gene="mepA"
/locus_tag="Avi_0241"
/note="penicillin-insensitive murein endopeptidase;
Reviewed; Region: mepA; PRK09429"
/db_xref="CDD:181849"
gene 212727..214622
/locus_tag="Avi_0244"
/db_xref="GeneID:7387553"
CDS 212727..214622
/locus_tag="Avi_0244"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(peptide)"
/protein_id="YP_002548158.1"
/db_xref="GI:222147201"
/db_xref="GeneID:7387553"
/translation="MAVIRAGAKIRALFLGPLLLGLCAAQSLTTQAFAEEPQWRHAIG
LIDAPKYPEGFQRFDYVNPDAPKAGELKLSSFGSTFDTFNPIAGKGQLADGVQVLLSS
PPGASLVTETLLKSSLDEDGVSYGLLAEALAYPDDVSYVKFRLRREAKWADGQPVTPD
DVVFSFDAVKQLNPAAAIYYNHVVKAEKTGEREITFTFDQKGNKELPSIVGQLDVVPK
HWWQGQGPDGKPRDISKTTLEPIMGSGPYRIAGFSPGGSVRYQLRDDYWGKDINVNIG
YNNFRSISYTYYTDINVAFEGFRSGATDLWLENSAMRWTKSYDFPAAVQGRIKREQIP
NDYRKAGLMMGFFLNTRREQFKDVNVRKALNYAFDFEELNRTAFFGLYKRIDSYFYGN
DLASSGLPDGKELEILNGIKQYVPPEVFSTVYKNPVSGDPAKQRDNLRMAISLFAKAG
YELRGNRMVSKATGKPFTFEILLDGPLIERVALPYANNLRKIGIEVNVRSVDSSQFTS
RLRSFDYDAVYYVASQSTNPGNEQRDYWGSASADTTASRNYAGIKNPGIDALIDQIIF
AKDRDTLMATVHALDRMLLAGAYVVPFYTRGDVWFAYWDKFAHPQNLPEFSSGFPDIW
WAKQVSN"
misc_feature 212871..214601
/locus_tag="Avi_0244"
/note="ABC-type oligopeptide transport system, periplasmic
component [Amino acid transport and metabolism]; Region:
OppA; COG4166"
/db_xref="CDD:33908"
misc_feature 212886..214556
/locus_tag="Avi_0244"
/note="The substrate-binding component of an
uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like_14; cd08497"
/db_xref="CDD:173862"
gene 214795..215886
/locus_tag="Avi_0245"
/db_xref="GeneID:7387554"
CDS 214795..215886
/locus_tag="Avi_0245"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002548159.1"
/db_xref="GI:222147202"
/db_xref="GeneID:7387554"
/translation="MGAYILRRLLLMIPTMVGIMGISFLVIQFAPGGPVEQVVAQLSG
QGDSADQRLSGGGDIVSQGGMGDGGSNYRGAQGLDPDLIKKLEKQFGFDKPPLTRFLD
MMWNYIRFDFGESFFRNTSVIDLIVEKMPVSISLGVWVLLLSYAISIPLGIRKAVKDG
STFDVWTSGIVVVGYAVPGFLFGILLIVLFAGGSFYNWFPLRGLTSDNFADLSWWQKI
LDYFWHLTLPLTALLLSAFATTTLLTKNSFIDEIKKQYVVTARAKGLSEHRVLYGHVF
RNAMLIVIAGIPGAFVSAFFTGSLLIENIFSLDGLGRLGYLSIINRDYPIVFATLYIF
SLLGLVVSLVSDLIYTWIDPRIDFDRRDV"
misc_feature 214795..215880
/locus_tag="Avi_0245"
/note="ABC-type uncharacterized transport system, permease
component [General function prediction only]; Region:
COG4174"
/db_xref="CDD:33914"
misc_feature 215182..215796
/locus_tag="Avi_0245"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(215230..215235,215242..215247,215260..215262,
215293..215304,215308..215337,215344..215349,
215380..215382,215458..215463,215467..215469,
215473..215475,215482..215487,215530..215532,
215542..215547,215554..215556,215605..215607,
215647..215652,215659..215661,215683..215694,
215701..215706,215731..215736,215764..215769,
215776..215781,215785..215790)
/locus_tag="Avi_0245"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(215311..215349,215377..215382,215683..215700)
/locus_tag="Avi_0245"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(215380..215382,215443..215445,215701..215703,
215725..215727,215734..215736,215764..215766)
/locus_tag="Avi_0245"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(215557..215595,215611..215616,215626..215628)
/locus_tag="Avi_0245"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 215886..217022
/locus_tag="Avi_0246"
/db_xref="GeneID:7387555"
CDS 215886..217022
/locus_tag="Avi_0246"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_002548160.1"
/db_xref="GI:222147203"
/db_xref="GeneID:7387555"
/translation="MAAVPEHLAKPPKKPFLTPINRRRLENFKANRRGSWSFWIFMVL
FGLSLCAELIANDRPIIASYKGEILFPVAINYPEEKFGGFLAVTDYRSSFVSDEINAH
GWMIWPPIRYSYRTVNSEIPQSAPTPPFWLMDAKQRCSAYPKGADDPNCIIGNMNWLG
TDDQARDVMARMIYGFRISVLFGLALTMISAVIGVSAGAVQGYFGGKTDLLMQRFIEI
WSSIPLLYILLIIASLLPPGFFILLGIMLLFTWVHFVGIVRAEFLRARNFEYVNAARA
LGVGNWTIMRRHLLPNAMVATLTFLPFILSGSITTLTSLDFLGLGMPPGSPSLGELIA
QGKRNLQAPWLGLTAFFTMAIMLSLLIFVGEAVRDAFDPRKTFK"
misc_feature 215925..217016
/locus_tag="Avi_0246"
/note="ABC-type uncharacterized transport system, permease
component [General function prediction only]; Region:
COG4239"
/db_xref="CDD:33962"
misc_feature 216411..216956
/locus_tag="Avi_0246"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(216459..216464,216471..216476,216489..216491,
216519..216530,216534..216563,216570..216575,
216579..216581,216639..216641,216645..216647,
216654..216659,216663..216665,216675..216680,
216687..216689,216738..216740,216780..216785,
216792..216794,216813..216824,216831..216836,
216873..216878,216906..216911,216918..216923,
216927..216932,216939..216944,216951..216956)
/locus_tag="Avi_0246"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(216537..216581,216813..216830)
/locus_tag="Avi_0246"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(216579..216581,216831..216833,216867..216869,
216876..216878,216906..216908)
/locus_tag="Avi_0246"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(216690..216728,216744..216749,216759..216761)
/locus_tag="Avi_0246"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 217019..218647
/locus_tag="Avi_0247"
/db_xref="GeneID:7387556"
CDS 217019..218647
/locus_tag="Avi_0247"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(peptide)"
/protein_id="YP_002548161.1"
/db_xref="GI:222147204"
/db_xref="GeneID:7387556"
/translation="MSAPLLSVRDLSVAFHQGESQSLAVDHVSFDIAPGEILALVGES
GSGKSVSAASILKLLPYPAASHPSGQILFDGRDLLTLSEPALRAVRGNDITMIFQEPM
TSLNPLHSIEQQIGEILELHQSLTGDAARKRTLELLLQVGIREPEKRLSAFPHELSGG
QRQRVMIAMALANRPKLLVADEPTTALDVTVQAQILELLAGLKREHGMSMLFITHDLG
IVRKFADRVCVMTGGKIVESGPVEAIFANPQHAYTRKLLASEPRGVPPETDLAKPVVM
EGQEIRVWFPIKAGFLRRVVDNVKAVDGVDLTLRAGQTLGVVGESGSGKTTLGLALAR
LISSRGRIGFLGKNIDGYSFKQMRPLRDRLQVVFQDPFGALSPRMSVGDIIAEGLRVH
ERGLTAAERDRRVCWALEEVGLDIATRWRYPHEFSGGQRQRIAIARAMVLKPRFVMLD
EPTSALDMTVQAQVVDLLRDLQSRHDLAYLFISHDLKVVKALANDIIVMRSGKVVEQG
PAQEVFTAPKQDYTKALLAAAFDLKAMNIGGVSQ"
misc_feature 217019..218584
/locus_tag="Avi_0247"
/note="ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only]; Region: COG4172"
/db_xref="CDD:33913"
misc_feature 217031..217735
/locus_tag="Avi_0247"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 217142..217165
/locus_tag="Avi_0247"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(217151..217156,217160..217168,217313..217315,
217559..217564,217661..217663)
/locus_tag="Avi_0247"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 217304..217315
/locus_tag="Avi_0247"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 217487..217516
/locus_tag="Avi_0247"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 217547..217564
/locus_tag="Avi_0247"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 217571..217582
/locus_tag="Avi_0247"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 217649..217669
/locus_tag="Avi_0247"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 217724..>217816
/locus_tag="Avi_0247"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; pfam08352"
/db_xref="CDD:203916"
misc_feature 217841..218542
/locus_tag="Avi_0247"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 217973..217996
/locus_tag="Avi_0247"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(217982..217987,217991..217999,218123..218125,
218366..218371,218468..218470)
/locus_tag="Avi_0247"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 218114..218125
/locus_tag="Avi_0247"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 218294..218323
/locus_tag="Avi_0247"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 218354..218371
/locus_tag="Avi_0247"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 218378..218389
/locus_tag="Avi_0247"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 218456..218476
/locus_tag="Avi_0247"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
gene 218676..219638
/locus_tag="Avi_0248"
/db_xref="GeneID:7387557"
CDS 218676..219638
/locus_tag="Avi_0248"
/codon_start=1
/transl_table=11
/product="2-hydroxyacid dehydrogenase"
/protein_id="YP_002548162.1"
/db_xref="GI:222147205"
/db_xref="GeneID:7387557"
/translation="MSPKPPVVIDLKFSRAAMQAALAGAFPDREVIDLGDPENAGRDL
SAAAYAVLWKPEPSLFTRASGLKVLFSGGAGVDHVLTLPGLPDLPIVRFVDRSLTDRM
SEWVVLNCLYHLRHMGQYLRQQREKVWSEIDLQPEARDVTVGVMGLGVLGEDAARKLK
VMGFDVIGWSRRRREIDGIDTYDEAHIDEFLARTDILVGLLPLTPETRGLYDSSLFSR
LRQGGALGKPVFLNAGRGGSQVEVDVIAALQKGVLGGASLDVFEKEPLAMDSPLWAME
NVVLTPHAAAASDVRALFAHVETQIARFEAGEALEHVVDRSAGY"
misc_feature 218679..219635
/locus_tag="Avi_0248"
/note="Phosphoglycerate dehydrogenase and related
dehydrogenases [Amino acid transport and metabolism];
Region: SerA; COG0111"
/db_xref="CDD:30460"
misc_feature 219006..219530
/locus_tag="Avi_0248"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
gene 219721..220002
/locus_tag="Avi_0249"
/db_xref="GeneID:7387558"
CDS 219721..220002
/locus_tag="Avi_0249"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548163.1"
/db_xref="GI:222147206"
/db_xref="GeneID:7387558"
/translation="MAGPGNFDPADRNLNTTPETPGAERPLEPTEARQGFRGKPVLIV
LLAGLVLALVAWIPAEWWGQKIAPSTDPATETTRPTTAPQQPSQPSTTP"
gene 220183..221487
/gene="pncB"
/locus_tag="Avi_0250"
/db_xref="GeneID:7387559"
CDS 220183..221487
/gene="pncB"
/locus_tag="Avi_0250"
/note="catalyzes the formation of nictonate and
5-phospho-alpha-D-ribose 1-diphosphate from nicotinate
D-ribonucleotide and diphosphate"
/codon_start=1
/transl_table=11
/product="nicotinate phosphoribosyltransferase"
/protein_id="YP_002548164.1"
/db_xref="GI:222147207"
/db_xref="GeneID:7387559"
/translation="MAKADIARRVYNHAWKLDPIVRSLLDTDFYKLLMLQMIWKLYPD
VDVTFTLINRTTSVRIADEIDEAELRAQLDHVRTLGISKKELIWLAGNSFYGRTQIFE
PEFLAWLSAIRLPAYELSKRDGQYELTFRGRWMETTLWEIPALAIINELRSRAALKSL
GYFTLDVIYARAKAKMWEKVERLKQLPGLRISDFGTRRRHSFLWQRWCVEALKEGIGE
AFTGTSNVLLAMDSDLEAVGTNAHELPMVAAALAKTDAELANAPYKVLQDWNTLYNGN
LLIVLPDAFGTSAFLRDAPPWVADWTGFRPDSAPPIEGGERIIAWWEKMGRDPRQKLL
IFSDGLDVDAIIDTYRHFEGRVRMSFGWGTNLTNDFIGCAPHDIAGLKPISIVCKITE
ANGRPAVKLSDNPLKATGEPAEVERYLKFFGSEDRVEHAVKV"
misc_feature 220213..221469
/gene="pncB"
/locus_tag="Avi_0250"
/note="Nicotinic acid phosphoribosyltransferase [Coenzyme
metabolism]; Region: PncB; COG1488"
/db_xref="CDD:31677"
misc_feature 220219..221475
/gene="pncB"
/locus_tag="Avi_0250"
/note="nicotinate phosphoribosyltransferase; Provisional;
Region: PRK05321"
/db_xref="CDD:180013"
misc_feature order(220768..220776,220849..220854,221101..221103,
221191..221196,221263..221265,221269..221274,
221281..221283)
/gene="pncB"
/locus_tag="Avi_0250"
/note="active site"
/db_xref="CDD:29612"
gene complement(221504..221995)
/locus_tag="Avi_0252"
/db_xref="GeneID:7387560"
CDS complement(221504..221995)
/locus_tag="Avi_0252"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548165.1"
/db_xref="GI:222147208"
/db_xref="GeneID:7387560"
/translation="MKAAEVERLRAMFPGIYSDFLAGRIGSLRVALEVAGLRPQRSRL
EKLKNSWKKASLEERRAFIAWLAAQENGEALKSAVSRSTMSVQKSAAGPIANGRYLLP
ETIIRIETVMARRRLKPGEVMQELGFGANDRSLLKALARKAALRLKAIAALESWLAEN
ESS"
gene complement(222372..222461)
/locus_tag="Avi_4596"
/db_xref="GeneID:7387561"
tRNA complement(222372..222461)
/locus_tag="Avi_4596"
/product="tRNA-Ser"
/db_xref="GeneID:7387561"
gene 222659..222979
/locus_tag="Avi_0253"
/db_xref="GeneID:7387186"
CDS 222659..222979
/locus_tag="Avi_0253"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548166.1"
/db_xref="GI:222147209"
/db_xref="GeneID:7387186"
/translation="MIRFLLRILSFIMLVLAIVAGTTDAIESVASSDVVTTGFGSLWA
DIGPKSLAVVKQAITAHIGSDALQLADKGILQQPAFAVFLSMALLLWIAGYKRRSPAG
RFAA"
gene 223555..224547
/locus_tag="Avi_0256"
/db_xref="GeneID:7387562"
CDS 223555..224547
/locus_tag="Avi_0256"
/codon_start=1
/transl_table=11
/product="membrane lipoprotein"
/protein_id="YP_002548167.1"
/db_xref="GI:222147210"
/db_xref="GeneID:7387562"
/translation="MKKSLITLFAMAAMSASALAADIKPALVYGTGGKFDKSFNEAAF
NGADKFEKETGIKFRDFEPTSDTQGEQAIRNFASKGFSPIVAVSFAWTSAMEKVATEF
PDTKFVIVDSVVDKPNVRSVVFKEEEGSYLVGLLAGMASKTGKVSFVGGMDIPLIRKF
ECGYEQGARAANPKIEVLQNMVGTTGAAWNDPVRAGELTKNQMDQGSDVIYAAAGASG
MGVLQTAADAKKLSIGVDSNQNHLHPGSVLTSMVKRVDLAVYNAYADAKADKFKPGLE
VLGVKEDGVMAALDDNNKALITPEMKAAVEKARADIIAGTVKVHDYMADNSCPK"
misc_feature 223618..224544
/locus_tag="Avi_0256"
/note="Uncharacterized ABC-type transport system,
periplasmic component/surface lipoprotein [General
function prediction only]; Region: Med; COG1744"
/db_xref="CDD:31930"
misc_feature 223624..224409
/locus_tag="Avi_0256"
/note="Periplasmic binding domain of basic membrane
lipoprotein, PnrA, in Treponema pallidum and its homologs
from other bacteria and Archaea; Region:
PBP1_BmpA_PnrA_like; cd06354"
/db_xref="CDD:107349"
misc_feature order(223642..223647,223672..223674,223885..223887,
224023..224025,224119..224121,224197..224199,
224260..224262,224311..224313)
/locus_tag="Avi_0256"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107349"
gene 224789..226222
/locus_tag="Avi_0258"
/db_xref="GeneID:7387563"
CDS 224789..226222
/locus_tag="Avi_0258"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(sugar/ribonucleotide)"
/protein_id="YP_002548168.1"
/db_xref="GI:222147211"
/db_xref="GeneID:7387563"
/translation="MTVAKGSIHGIIGENGAGKSTLMSILYGFYQADSGEIKIGGQST
VIKDSQAAISSGIGMVHQHFMLVENFTVLENVMLGAEGGALLAKGTAAARASLKQLET
DYGLDVDPDAVVEELPVGRQQRVEILKALYRGADILILDEPTGVLTPAEADHLFKILR
VLRDQGKTVILITHKLREIMAITDTVSVMRRGEIVATRKTVETSVEELAELMVGRRVL
LRVDKQPAQPRDVLLSVRNLTVKDSRGVIMVDDVSFDVREGEIVGIAGVAGNGQSELL
EAITGIRKPMSGEILIAGKLVTGYDPARLRDLGLAHIPEDRHHMGLVLPFEESQNAIL
GYHRDERYGKGMFLDPKAIRAAAEVEIAKYDIRPPNPRLKTANFSGGNQQKIVVAREI
ERDPNVLIIGQPTRGVDIGAIEFIHRRIVETRDKGKALLLVSVELDEIRSLSDRILVM
FAGKVVGEKTADADEQTLGLMMAGIAA"
misc_feature 224789..226210
/locus_tag="Avi_0258"
/note="ABC-type uncharacterized transport systems, ATPase
components [General function prediction only]; Region:
COG3845"
/db_xref="CDD:33636"
misc_feature 224789..225379
/locus_tag="Avi_0258"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 224825..224848
/locus_tag="Avi_0258"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(224834..224839,224843..224851,224972..224974,
225209..225214,225308..225310)
/locus_tag="Avi_0258"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 224963..224974
/locus_tag="Avi_0258"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 225137..225166
/locus_tag="Avi_0258"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 225197..225214
/locus_tag="Avi_0258"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 225221..225232
/locus_tag="Avi_0258"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 225296..225316
/locus_tag="Avi_0258"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature 225476..226153
/locus_tag="Avi_0258"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene 226230..227360
/locus_tag="Avi_0259"
/db_xref="GeneID:7387564"
CDS 226230..227360
/locus_tag="Avi_0259"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002548169.1"
/db_xref="GI:222147212"
/db_xref="GeneID:7387564"
/translation="MSTASIPLPNWITYGLLPVINLLLAFLISGLVVWIIGENPWDAL
VLMLQGALGRGEGIGFTLYYATNFIFTGLSVAVAYHAGLFNIGSEGQAYVGGLGAALV
ALALDRYCPWYVTMPFAVIGAALFGAAWALIPAWLQAKRGSHIVITTIMFNFIGAALM
VYLLVHVLIVPGKMAPETRTFLEGGQLPKLDWLMALFGLKLGPAPFNVSFIIALVMAF
AVWVLIWRTKLGYEMRTLGISRSAAAYAGIPYVKIVIITMLISGGLAGMMSLNTVMGA
SARLQVEFVGGAGFVGIAVSLMGRSHPLGIVIAAILFGVLYQGGAELSFDMPNITRDM
IVVIQGLVILFAGALEFMFRPALVRFYQTIARPAARPATSSK"
misc_feature 226422..227267
/locus_tag="Avi_0259"
/note="Transmembrane subunit (TM) of Treponema pallidum
(Tp) RbsC-1, RbsC-2 and related proteins. This is a
functionally uncharacterized subgroup of TMs which belong
to a larger group of TMs of Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette; Region:
TM_PBP1_transp_TpRbsC_like; cd06580"
/db_xref="CDD:119322"
misc_feature 226950..227006
/locus_tag="Avi_0259"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119322"
gene 227373..228344
/locus_tag="Avi_0260"
/db_xref="GeneID:7387565"
CDS 227373..228344
/locus_tag="Avi_0260"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_002548170.1"
/db_xref="GI:222147213"
/db_xref="GeneID:7387565"
/translation="MDNFDMIVSILGSTVRLSIPLIFTALAGLFSERAGVFDIGLEGK
MLAGAFAAACVAYLTGSAWAGLAGGIAVSIGFSLIHGFASITNRGNQIISGVALNFVA
AGLTAVLGQAWFSQGGRTPQLPGDARFQPIVLPGTDALRDVPFLGPLYANVVSGNNAL
TYLAFLAVPLSWWVLYRTRFGLRLRAVGENPGAVDTAGISVAWLRYRAVIVAGFLCGF
AGAYLAIAQSAAFIRDMSAGKGYIALAALIFAKWKPVPVMFACLLFGFLDAMSNFMQG
KAVPGIGEVPVQIFQALPYILTCILLAGFIGAANGPKAGGVPYVKER"
misc_feature 227424..228278
/locus_tag="Avi_0260"
/note="Transmembrane subunit (TM) of Treponema pallidum
(Tp) RbsC-1, RbsC-2 and related proteins. This is a
functionally uncharacterized subgroup of TMs which belong
to a larger group of TMs of Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette; Region:
TM_PBP1_transp_TpRbsC_like; cd06580"
/db_xref="CDD:119322"
misc_feature 227946..228002
/locus_tag="Avi_0260"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119322"
gene 228346..228738
/gene="cdd"
/locus_tag="Avi_0262"
/db_xref="GeneID:7387566"
CDS 228346..228738
/gene="cdd"
/locus_tag="Avi_0262"
/note="Reclaims exogenous and endogenous cytidine and
2'-deoxycytidine molecules for UMP synthesis"
/codon_start=1
/transl_table=11
/product="cytidine deaminase"
/protein_id="YP_002548171.1"
/db_xref="GI:222147214"
/db_xref="GeneID:7387566"
/translation="MSHDLFEAARDAMRHAHAPYSKFPVGAAIRADDGKIYVGANIEN
LSFPQGWCAEPTAIGCMIMGGGRKIVEIAVIAEKLALCPPCGGCRQKIREFASPETKI
YLCDEVGVQKVMSMDELLPFSFETDTLG"
misc_feature 228361..228696
/gene="cdd"
/locus_tag="Avi_0262"
/note="Cytidine deaminase zinc-binding domain. These
enzymes are Zn dependent. The zinc ion in the active site
plays a central role in the proposed catalytic mechanism,
activating a water molecule to form a hydroxide ion that
performs a nucleophilic attack on...; Region:
cytidine_deaminase; cd01283"
/db_xref="CDD:29826"
misc_feature order(228412..228414,228418..228420,228466..228468,
228472..228474,228499..228507,228598..228600,
228607..228609)
/gene="cdd"
/locus_tag="Avi_0262"
/note="active site"
/db_xref="CDD:29826"
misc_feature order(228499..228507,228595..228600,228607..228609)
/gene="cdd"
/locus_tag="Avi_0262"
/note="catalytic motif [active]"
/db_xref="CDD:29826"
misc_feature order(228499..228501,228505..228507,228598..228600,
228607..228609)
/gene="cdd"
/locus_tag="Avi_0262"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:29826"
gene 228735..229544
/locus_tag="Avi_0263"
/db_xref="GeneID:7387567"
CDS 228735..229544
/locus_tag="Avi_0263"
/note="catalyzes the formation of a purine and ribose
phosphate from a purine nucleoside; in E. coli this enzyme
functions in xanthosine degradation"
/codon_start=1
/transl_table=11
/product="purine nucleoside phosphorylase"
/protein_id="YP_002548172.1"
/db_xref="GI:222147215"
/db_xref="GeneID:7387567"
/translation="MTPAVDLLIDRLNGLLPRIAIVLGSGLGGLVDEVENAVRIPFAD
IPGFPQGGVSGHAKELVAGLFAGQPIIMLAGRVHYYEEGDAAAMRLPIETLASLGVTT
LILTNAAGSLRADMPPGSVMQLIDHINFSGHNPLIGETGDGRFVGMTQAYDGELAEAM
RRAADAEDISLSSGVYMWFSGPSFETPAEIRMARTLGADAVGMSTVPEVILARFFGLK
VAAASVITNYGAGMTGAELSHEETKDMAPIGGRRLVAILKRMIVDGGADLG"
misc_feature 228735..229517
/locus_tag="Avi_0263"
/note="purine nucleoside phosphorylase; Provisional;
Region: PRK08202"
/db_xref="CDD:181286"
gene 229522..230310
/gene="deoC"
/locus_tag="Avi_0264"
/db_xref="GeneID:7387568"
CDS 229522..230310
/gene="deoC"
/locus_tag="Avi_0264"
/note="catalyzes the formation of D-glyceraldehyde
3-phosphate and acetaldehyde from
2-deoxy-D-ribose-5-phosphate"
/codon_start=1
/transl_table=11
/product="deoxyribose-phosphate aldolase"
/protein_id="YP_002548173.1"
/db_xref="GI:222147216"
/db_xref="GeneID:7387568"
/translation="MEEQILDSRELRECAAVALSVLDLTNLKDDCKPEEIDDLCARAV
TPFGHTAAICIWPRFVAQARGLLGHDGQVKIATVVNFPSGDLDIATVVAETETALADG
ADEIDLVIPYHAFIEGDETAVAEMIRAVRAVIASPAILKVILETGELKSAALIRRASQ
IAIAEGADFIKTSTGKVTVNATLEAADIMLQEIRDSGRKVGFKPAGGISTVKDASLYF
RHASAIMGDDWVMPSTFRFGASGLLNDILAILSGEKSSGPASGY"
misc_feature 229573..230241
/gene="deoC"
/locus_tag="Avi_0264"
/note="2-deoxyribose-5-phosphate aldolase (DERA) of the
DeoC family; Region: DeoC; cd00959"
/db_xref="CDD:188646"
misc_feature order(229600..229602,229606..229608,229612..229614,
229690..229698,229762..229764,229786..229788,
229801..229803,229816..229827,229852..229854,
229858..229860,229915..229920,229963..229965)
/gene="deoC"
/locus_tag="Avi_0264"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:188646"
misc_feature order(230032..230034,230041..230043,230134..230142,
230233..230241)
/gene="deoC"
/locus_tag="Avi_0264"
/note="active site"
/db_xref="CDD:188646"
misc_feature 230032..230034
/gene="deoC"
/locus_tag="Avi_0264"
/note="catalytic residue [active]"
/db_xref="CDD:188646"
gene 230312..231631
/gene="deoA"
/locus_tag="Avi_0265"
/db_xref="GeneID:7387569"
CDS 230312..231631
/gene="deoA"
/locus_tag="Avi_0265"
/codon_start=1
/transl_table=11
/product="thymidine phosphorylase"
/protein_id="YP_002548174.1"
/db_xref="GI:222147217"
/db_xref="GeneID:7387569"
/translation="MQAVEIIRRKRDGEELSSADLQTFIRALSRDELSEGQIAAFAMA
VFLRGMSDAETVALTLAMRDSGTVLSWKTAGRPVADKHSTGGVGDNVSLMLAPMMAAC
GLAVPMISGRGLGHTGGTLDKLESIPGYDIAPDASVFHALVEEIGCAIIGQTADLAPA
DKRLYAVRDVTATVESVPLITASILSKKLASGLESLVMDVKFGNGAFMGQIDEARALA
RSLVAVANGAGTRTSALLTDMNEPLADCAGNAVEIANAVAFLRGEKAGTRLETVTLAL
GAEMLVNAGVEPDRNAADIRCRHALESGRAAEIFGRMVHGLGGPLDFIDRAGQYLPKA
VLDIPVLATASGFISTVATRDIGLAVIDLGGGRRRASDRIDHSVGFSGLLPVGTAVTK
GDVLAVVHAADEASGTRAAQVIAASVAIGDEALVPGPAVVERLNSQS"
misc_feature 230312..231616
/gene="deoA"
/locus_tag="Avi_0265"
/note="thymidine phosphorylase; Reviewed; Region: deoA;
PRK05820"
/db_xref="CDD:180276"
misc_feature 230315..230512
/gene="deoA"
/locus_tag="Avi_0265"
/note="Glycosyl transferase family, helical bundle domain;
Region: Glycos_trans_3N; pfam02885"
/db_xref="CDD:145834"
misc_feature 230540..231286
/gene="deoA"
/locus_tag="Avi_0265"
/note="Glycosyl transferase family, a/b domain; Region:
Glycos_transf_3; pfam00591"
/db_xref="CDD:144256"
misc_feature 231350..231574
/gene="deoA"
/locus_tag="Avi_0265"
/note="Pyrimidine nucleoside phosphorylase C-terminal
domain; Region: PYNP_C; pfam07831"
/db_xref="CDD:116444"
gene complement(231615..232352)
/gene="phnF"
/locus_tag="Avi_0266"
/db_xref="GeneID:7387570"
CDS complement(231615..232352)
/gene="phnF"
/locus_tag="Avi_0266"
/codon_start=1
/transl_table=11
/product="phosphonates metabolism transcriptional
regulator PhnF"
/protein_id="YP_002548175.1"
/db_xref="GI:222147218"
/db_xref="GeneID:7387570"
/translation="MAGQKAIERQTGVALWRQIADRIRVSISDGTYDTTGMVPPETIL
AGEFGVNRHTVRSALAALAQEGIVRAVQGRGTLIERRDRISFPISKRTRFTPGIGDQA
RALQGLLLESAVETPSADVMEHLQLANGDQVIRLEVLRKADGRAVSRSTSWFPLPRFE
GIDVAYRQSGSITAAFATCGLADYLRVRTDISAVHADPSDRDELGLSPGAIVMITKAL
NTDLDGAPVQYAVTHFPADRVQFKIES"
misc_feature complement(231621..232334)
/gene="phnF"
/locus_tag="Avi_0266"
/note="phosphonates metabolism transcriptional regulator
PhnF; Region: C_P_lyase_phnF; TIGR02325"
/db_xref="CDD:131378"
misc_feature complement(232125..232310)
/gene="phnF"
/locus_tag="Avi_0266"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature complement(order(232125..232136,232140..232145,
232173..232175,232182..232187,232191..232205,
232227..232232,232236..232238,232305..232307))
/gene="phnF"
/locus_tag="Avi_0266"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature complement(231633..232055)
/gene="phnF"
/locus_tag="Avi_0266"
/note="UTRA domain; Region: UTRA; pfam07702"
/db_xref="CDD:203732"
gene 232452..232919
/gene="phnG"
/locus_tag="Avi_0267"
/db_xref="GeneID:7387571"
CDS 232452..232919
/gene="phnG"
/locus_tag="Avi_0267"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548176.1"
/db_xref="GI:222147219"
/db_xref="GeneID:7387571"
/translation="MGARAKSANPDGVHRKRVVDLLAAAHLDELKALWSGLPFAPEAQ
FLRGPETGLVMVRGRIGGGGASFNLGEVTVTRATCRLASGQVGHAQALGTSKEKARLS
AIFDALWQDEAHRAQIEPLLAAVERRLNEGDRVKAEQVAATKVDFFTMVRGED"
misc_feature 232494..232916
/gene="phnG"
/locus_tag="Avi_0267"
/note="Phosphonate metabolism protein PhnG; Region: PhnG;
pfam06754"
/db_xref="CDD:148387"
gene 232979..233524
/gene="phnH"
/locus_tag="Avi_0269"
/db_xref="GeneID:7387572"
CDS 232979..233524
/gene="phnH"
/locus_tag="Avi_0269"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548177.1"
/db_xref="GI:222147220"
/db_xref="GeneID:7387572"
/translation="MFRAVMDGMARPGTHHTVDLSLQPPSPFGLAQAAIALTLCDVDT
RVWLSGGLGKSAVPAWLSFHTGAGTTADKTEAQFAFFEAGSPLAAFAQFSTGTQDYPD
RSVTLIYEATSLEGGQPLTLKGPGIQDRTMIAPLGLPDGFLRHWQDNHALFPRGVDVI
FTAGRDFLCLPRSCAILSGEA"
misc_feature 232982..233497
/gene="phnH"
/locus_tag="Avi_0269"
/note="carbon-phosphorus lyase complex subunit; Validated;
Region: phnH; PRK10147"
/db_xref="CDD:182267"
gene 233525..234631
/gene="phnI"
/locus_tag="Avi_0270"
/db_xref="GeneID:7387573"
CDS 233525..234631
/gene="phnI"
/locus_tag="Avi_0270"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548178.1"
/db_xref="GI:222147221"
/db_xref="GeneID:7387573"
/translation="MYVAVKGGETAIANAHSLLADRRRGDRSLPTMTVDQIVEQLTLA
VGRVMAEASLYDRKLAALAIKQARGDMIEAIFLLRAYRTTLPRFGLSEPVDTGAMRIE
RRISATYKDLPGGQLLGPTFDYTHRLLDPSLLEEGDVEPPVQKIPTSEAAMRVSDILR
EEGLIEPDGDMPEDHLAGDITRQPIEFPMARDLRLQSLARGDEGFLLALAYSTQRGYG
RSHPFAGEIRLGEVEVELDVPELGFAVSLGRIQVTECQMVNQFKGSSKAPPQFTRGYG
LVFGQSERKAMAMSLVDRSLRAEELGEDITAPAQDQEFVLSHCDNVQATGFVEHLKLP
HYVDFQAELDLVRRMRSEHEQARQQGLDLSEAAE"
misc_feature 233525..234592
/gene="phnI"
/locus_tag="Avi_0270"
/note="Bacterial phosphonate metabolism protein (PhnI);
Region: PhnI; pfam05861"
/db_xref="CDD:147814"
gene 234774..235682
/gene="phnJ"
/locus_tag="Avi_0273"
/db_xref="GeneID:7387574"
CDS 234774..235682
/gene="phnJ"
/locus_tag="Avi_0273"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548179.1"
/db_xref="GI:222147222"
/db_xref="GeneID:7387574"
/translation="MITEVSLADEIATYNFAYLDEQTKRMIRRAILKAIAIPGYQVPF
ASREMPMPYGWGTGGVQVTAAILGPDDVLKVIDQGADDTTNAVSIRAFFQKVANVAVT
THTGDATIIQTRHRIPEEKLRAGQVLVYQVPIPEPLRFLEPRETETRKMHALEEYGLM
HVKLYEDIARNGRIATTYAYPVKVAGRYVMDPSPTPKFDNPKMHRSEALQLFGAGREK
RIYAVPPYTDVVSLDFEDHPFTVQSFDKPCALCGAEHVYLDEVILDDKGGRMFVCSDT
DHCEDRRAKGHRGEMLAETQQGEAAQ"
misc_feature 234813..235637
/gene="phnJ"
/locus_tag="Avi_0273"
/note="Phosphonate metabolism protein PhnJ; Region: PhnJ;
pfam06007"
/db_xref="CDD:147910"
gene 235679..236455
/gene="phnK"
/locus_tag="Avi_0274"
/db_xref="GeneID:7387575"
CDS 235679..236455
/gene="phnK"
/locus_tag="Avi_0274"
/codon_start=1
/transl_table=11
/product="phosphonate C-P lyase system protein PhnK"
/protein_id="YP_002548180.1"
/db_xref="GI:222147223"
/db_xref="GeneID:7387575"
/translation="MTQQPLLKVRDLSKFYGRRIGCANVSFDLWPGEVLAVVGESGSG
KTTLLSCLSTRLMPTTGSVDYRMRDGAYRELYHMSEAERRFLMRTDWGFVHQNPADGL
RMTVSAGANVGERLMAVGERHYGNIRATATDWLDRVEIAADRIDDQPRAFSGGMRQRL
QIARNLVTNPRLVFMDEPTGGLDVSVQARLLDLVRGLVADLGLSVIVVTHDLAVARLL
SHRMMVMKDGHVIEQGLTDRVLDDPREPYTQLLVSSILQV"
misc_feature 235679..236452
/gene="phnK"
/locus_tag="Avi_0274"
/note="phosphonate C-P lyase system protein PhnK;
Provisional; Region: phnK; PRK11701"
/db_xref="CDD:183280"
misc_feature 235694..236380
/gene="phnK"
/locus_tag="Avi_0274"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 235793..235816
/gene="phnK"
/locus_tag="Avi_0274"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(235802..235807,235811..235819,235964..235966,
236204..236209,236306..236308)
/gene="phnK"
/locus_tag="Avi_0274"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 235955..235966
/gene="phnK"
/locus_tag="Avi_0274"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 236132..236161
/gene="phnK"
/locus_tag="Avi_0274"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 236192..236209
/gene="phnK"
/locus_tag="Avi_0274"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 236216..236227
/gene="phnK"
/locus_tag="Avi_0274"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 236294..236314
/gene="phnK"
/locus_tag="Avi_0274"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 236369..>236443
/gene="phnK"
/locus_tag="Avi_0274"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene 236468..237196
/gene="phnL"
/locus_tag="Avi_0275"
/db_xref="GeneID:7387576"
CDS 236468..237196
/gene="phnL"
/locus_tag="Avi_0275"
/codon_start=1
/transl_table=11
/product="phosphonate C-P lyase system protein PhnL"
/protein_id="YP_002548181.1"
/db_xref="GI:222147224"
/db_xref="GeneID:7387576"
/translation="MPTPLIVSDVAKSFTMHLRDGLVLPVVRNVSFSVNSGSCSVLGG
PSGIGKSSILKMLYGNYAVDSGQILVRHHDTVVDLASAMPRMVLDIRRDTMGYVSQFL
RTVPRVSALDVVAQPLTARGVGIDEARSVASDLLARLNLPKALWQLPPATFSGGEQQR
VNIARGFITDHKILLLDEPTASLDAQNRAVVIELIAGKKAEGVAMLGIFHDEEVREAV
ADTILDVSQFSPRGRQVQIEPAIL"
misc_feature 236468..237160
/gene="phnL"
/locus_tag="Avi_0275"
/note="ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism];
Region: PhnL; COG4778"
/db_xref="CDD:34390"
misc_feature 236480..237148
/gene="phnL"
/locus_tag="Avi_0275"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 236597..236620
/gene="phnL"
/locus_tag="Avi_0275"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(236606..236611,236615..236623,236765..236767,
236996..237001,237095..237097)
/gene="phnL"
/locus_tag="Avi_0275"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 236756..236767
/gene="phnL"
/locus_tag="Avi_0275"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 236924..236953
/gene="phnL"
/locus_tag="Avi_0275"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 236984..237001
/gene="phnL"
/locus_tag="Avi_0275"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 237008..237019
/gene="phnL"
/locus_tag="Avi_0275"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 237083..237103
/gene="phnL"
/locus_tag="Avi_0275"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 237272..237895
/locus_tag="Avi_0277"
/db_xref="GeneID:7387577"
CDS 237272..237895
/locus_tag="Avi_0277"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_002548182.1"
/db_xref="GI:222147225"
/db_xref="GeneID:7387577"
/translation="MSTRLGLEPQINPTASVTNSTLGRYTEVAERCRLDEVEMGDYSY
VMQDVSIWCATIGKFANIAASVRINAPNHPTWRATLHHFTYRAVDYFEGADLETDFFD
WRRENRVVIGHDVWIGHGATILPGVTIGNGAVVGAGAVVSKPVEPYTIVGGVPAKPIK
PRFGPGIGARMDRLAWWDWQHERLHAALADFRTLSAEDFLARHEVLA"
misc_feature 237272..237883
/locus_tag="Avi_0277"
/note="phosphonate metabolim protein, transferase
hexapeptide repeat family; Region: phn_thr-fam; TIGR03308"
/db_xref="CDD:132351"
misc_feature 237377..237808
/locus_tag="Avi_0277"
/note="Xenobiotic acyltransferase (XAT): The XAT class of
hexapeptide acyltransferases is composed of a large number
of microbial enzymes that catalyze the CoA-dependent
acetylation of a variety of hydroxyl-bearing acceptors
such as chloramphenicol and...; Region: LbH_XAT; cd03349"
/db_xref="CDD:100040"
misc_feature order(237395..237397,237401..237403,237452..237454,
237488..237493,237506..237508,237512..237514,
237518..237520,237611..237613,237617..237619,
237626..237628,237683..237685,237731..237733,
237755..237757)
/locus_tag="Avi_0277"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100040"
misc_feature order(237401..237403,237407..237409,237485..237490,
237494..237496,237521..237526,237617..237619,
237626..237628,237677..237682,237695..237697,
237719..237721,237725..237730,237734..237736,
237746..237748)
/locus_tag="Avi_0277"
/note="active site"
/db_xref="CDD:100040"
misc_feature order(237401..237403,237407..237409,237485..237487,
237521..237526)
/locus_tag="Avi_0277"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100040"
misc_feature order(237488..237490,237494..237496,237587..237589,
237617..237619,237626..237628,237641..237643,
237677..237682,237695..237697,237719..237721,
237725..237730,237734..237736,237746..237748)
/locus_tag="Avi_0277"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100040"
gene 238012..238851
/gene="phnC"
/locus_tag="Avi_0278"
/db_xref="GeneID:7387578"
CDS 238012..238851
/gene="phnC"
/locus_tag="Avi_0278"
/codon_start=1
/transl_table=11
/product="phosphonate ABC transporter ATP-binding protein"
/protein_id="YP_002548183.1"
/db_xref="GI:222147226"
/db_xref="GeneID:7387578"
/translation="MNFELTEVTRRFGKKIAVEAVTLSIPHGQMVGIIGRSGAGKSTL
LRMINRLADPTSGSMRFGDQEVTRLKGSALRSWQRDCAMIFQQFNLVPRLDVLTNVML
GRLNHRSTALSILNIFTREERIMAIAALERLGIEQTALQPAGTLSGGQQQRVAIARAL
MQAPKMLLADEPIASLDPLNAKIVMDALRDINEREGITVITNLHTLDTARAYCERIIG
MAAGKVVFDGPPDALTAQAVQAIYGTGQDGNGIDESMTSTAIRLPKSDLALSVPMVAA
TAG"
misc_feature 238012..238791
/gene="phnC"
/locus_tag="Avi_0278"
/note="ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and metabolism];
Region: COG3638"
/db_xref="CDD:33436"
misc_feature 238018..238737
/gene="phnC"
/locus_tag="Avi_0278"
/note="ABC-type phosphate/phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable carbon-to-phosphorus
(C-P) bond. Phosphonates are widespread among naturally
occurring compounds in all...; Region:
ABC_PhnC_transporter; cd03256"
/db_xref="CDD:73015"
misc_feature 238114..238137
/gene="phnC"
/locus_tag="Avi_0278"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73015"
misc_feature order(238123..238128,238132..238140,238267..238269,
238519..238524,238621..238623)
/gene="phnC"
/locus_tag="Avi_0278"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73015"
misc_feature 238258..238269
/gene="phnC"
/locus_tag="Avi_0278"
/note="Q-loop/lid; other site"
/db_xref="CDD:73015"
misc_feature 238447..238476
/gene="phnC"
/locus_tag="Avi_0278"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73015"
misc_feature 238507..238524
/gene="phnC"
/locus_tag="Avi_0278"
/note="Walker B; other site"
/db_xref="CDD:73015"
misc_feature 238531..238542
/gene="phnC"
/locus_tag="Avi_0278"
/note="D-loop; other site"
/db_xref="CDD:73015"
misc_feature 238609..238629
/gene="phnC"
/locus_tag="Avi_0278"
/note="H-loop/switch region; other site"
/db_xref="CDD:73015"
gene 239008..239916
/gene="phnD"
/locus_tag="Avi_0280"
/db_xref="GeneID:7387579"
CDS 239008..239916
/gene="phnD"
/locus_tag="Avi_0280"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(phosphonate)"
/protein_id="YP_002548184.1"
/db_xref="GI:222147227"
/db_xref="GeneID:7387579"
/translation="MLKKILLASVTLLSLAGVAAAEDLKEFRIGILGGENEADRLRNY
NCLSDHLKKEFGFTKVSLFPASDYDGVIQGLLGGTLDYAELGASGYAKAYLANPKAVE
PILTTVQTDGSMGYYSIMVARKDSGMTKVTDIKGKKLGFADPDSTSGYLIPTVTLPDA
LGGKPVKEYVGSTGFGGGHENLVLEVLKGTFDAGTTFGSGVGNFKDGYTSGNLRKMVD
KGVLNMDDLVELWKSPLIPNGPIVIRSSMNEDMKTKVKAFMMDLPKTDAACFSAIEGG
DFKGFAAVNVDFYKPVIDARKATIGG"
misc_feature 239008..239913
/gene="phnD"
/locus_tag="Avi_0280"
/note="ABC-type phosphate/phosphonate transport system,
periplasmic component [Inorganic ion transport and
metabolism]; Region: PhnD; COG3221"
/db_xref="CDD:33034"
misc_feature 239008..239910
/gene="phnD"
/locus_tag="Avi_0280"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene 239993..240955
/gene="phnE"
/locus_tag="Avi_0282"
/db_xref="GeneID:7387580"
CDS 239993..240955
/gene="phnE"
/locus_tag="Avi_0282"
/codon_start=1
/transl_table=11
/product="phosphonate ABC transporter permease"
/protein_id="YP_002548185.1"
/db_xref="GI:222147228"
/db_xref="GeneID:7387580"
/translation="MSHTARLSLLSEQGRVIESHWNALAKTRRLYTVAGLAVLFLALA
GSLWFANDTNSGKFFDRLPHLFDFVETLIPRDGNEIWRAMFDLPSPYDDGSLKYNYPE
GRYYLTQTLYIPEYFYKMIETLNIALVSTLLGGMLGFCFSFMAARNMMPNRFIRWPVR
RFMELLRAFPEVVLAGFFLAILSIGPIPAMIAVSVHTVGALGKLFFEVVENADMKPDE
GLRAVGGNWLERLWFGMVPQVMPNFISYALLRMEINVRASTIIGAVGGGGIGEPLRLS
ISQGHAAKTVAIVILLLTTVIAVDQFSAWLRRKLVGEQAFHAVS"
misc_feature <240326..240922
/gene="phnE"
/locus_tag="Avi_0282"
/note="phosphonate ABC transporter, permease protein PhnE;
Region: PhnE; TIGR01097"
/db_xref="CDD:188108"
misc_feature 240359..>240745
/gene="phnE"
/locus_tag="Avi_0282"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(240398..240403,240410..240415,240428..240430,
240467..240478,240482..240511,240518..240523,
240527..240529,240575..240580,240584..240586,
240590..240592,240599..240604,240608..240610,
240620..240625,240632..240634,240683..240685,
240725..240730,240737..240739)
/gene="phnE"
/locus_tag="Avi_0282"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature 240485..240529
/gene="phnE"
/locus_tag="Avi_0282"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(240635..240673,240689..240694,240704..240706)
/gene="phnE"
/locus_tag="Avi_0282"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 240965..242464
/gene="phnE"
/locus_tag="Avi_0284"
/db_xref="GeneID:7387581"
CDS 240965..242464
/gene="phnE"
/locus_tag="Avi_0284"
/codon_start=1
/transl_table=11
/product="phosphonate ABC transporter permease"
/protein_id="YP_002548186.1"
/db_xref="GI:222147229"
/db_xref="GeneID:7387581"
/translation="MTHLDATQMDLIAARHPDIFRRSLWQRYRVPLTIVLLALYFTFS
WWFFAVGKVVSTASWGIAGNYLADWVSYEIRPEINIAPDGAISIAYSRFDPIGPNPNP
DWLVTKQEMMTRTSGVADAPAPVTSAPKASSFNFMAAAPQQAPVAAQAAPVTRQEQVI
READVNLGSSASLLVSPESVVLNRGAERVTLMLDRKAGTVIADGTLPAWVEQRERGGR
VMAYFGLQGWADISADRVRVRNRFFGWANFLFDTNSAFFGRSATEVVSLIATGPRLDP
QQSNLSLAWNDILYNPSWQHLDVWTKLAQTLVMAFVGTVFASLIAFPLSFIAARNITR
NRPVNQLTKRFFDFLRSVDMLIWALFFTRAFGPGPLAGISAIFFTDTGTLGKLYSEAL
ENIDDKQREGVKSVGASPLAVQRFGVLPQVLPVFASQALYFWESNTRSATIIGAVGAG
GIGLKLWEAMRTNQNWENVCYMVLLILLVVFIFDAVSNLLRSKLIGGQK"
misc_feature <240965..241084
/gene="phnE"
/locus_tag="Avi_0284"
/note="Acidic fibroblast growth factor binding (FIBP);
Region: FIBP; pfam05427"
/db_xref="CDD:114168"
misc_feature 241577..242452
/gene="phnE"
/locus_tag="Avi_0284"
/note="ABC-type phosphate/phosphonate transport system,
permease component [Inorganic ion transport and
metabolism]; Region: COG3639"
/db_xref="CDD:33437"
misc_feature 241871..>242260
/gene="phnE"
/locus_tag="Avi_0284"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(241919..241924,241931..241936,241949..241951,
241988..241999,242003..242032,242039..242044,
242048..242050,242096..242101,242105..242107,
242111..242113,242120..242125,242129..242131,
242141..242146,242153..242155,242204..242206,
242246..242251,242258..242260)
/gene="phnE"
/locus_tag="Avi_0284"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature 242006..242050
/gene="phnE"
/locus_tag="Avi_0284"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(242156..242194,242210..242215,242225..242227)
/gene="phnE"
/locus_tag="Avi_0284"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 242577..243278
/locus_tag="Avi_0286"
/db_xref="GeneID:7387582"
CDS 242577..243278
/locus_tag="Avi_0286"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548187.1"
/db_xref="GI:222147230"
/db_xref="GeneID:7387582"
/translation="MRYALYFTPPKDDPLSLAAALWLGRDAFTGADLDRQPVEGFSDD
EITALTADPRRYGFHATLKAPFSLKEGESEAALLEMFSRFCKATPAFEIPKVVVNQLG
PFFAVVPDAVHQPLQDFAASVVEAFEPFRAPLSEADIIRRKPEKLSERKRALLDTWGY
PYVMEEFRFHMTLTGPVDADRSDAMRAVLESRFADFTNRALPIGGLGLFVEPSRNAPF
TVHRWLPLAGSEGSL"
misc_feature 242577..243260
/locus_tag="Avi_0286"
/note="putative phosphonate metabolism protein; Region:
Phn_opern_protn; TIGR03223"
/db_xref="CDD:163188"
gene 243278..244429
/gene="phnM"
/locus_tag="Avi_0287"
/db_xref="GeneID:7387583"
CDS 243278..244429
/gene="phnM"
/locus_tag="Avi_0287"
/codon_start=1
/transl_table=11
/product="phosphonate metabolism protein PhnM"
/protein_id="YP_002548188.1"
/db_xref="GI:222147231"
/db_xref="GeneID:7387583"
/translation="MSNETVLSNATVVLESGLLLKGAVVIRDGLIAEISEGNSRIGED
FGGDYLIPGLVELHTDHLESHYSPRPGVRWNKTAAIQAHDAQVVTSGITTVFDCLRMG
SDEDGGFEKGEMRDMADAIQAAEKDDRLRAEHLLHLRCEVASDNVLDHFADFEQDPHV
RLVSLMDHSPGQRQFQTMDQYTLYYKTKKGLSEEAFARFVEKRLEASAAYSSQHRDTL
ARLCAVRGITVASHDDATLAHVEEAKGHGVRLAEFPTSLEAADASHQAGMSVLMGAPN
VVRGGSHSGNIAATDLAERGVLDVLSSDYIPLSLLHAPFVLAHRYEAISLPQALAMVT
STPARTVGLEDRGRIAPGLRADLVRVRYSENHGGVPVVRSVWRQGRRVA"
misc_feature 243281..244426
/gene="phnM"
/locus_tag="Avi_0287"
/note="phosphonate metabolism protein PhnM; Provisional;
Region: PRK15446"
/db_xref="CDD:185343"
misc_feature 243302..>243454
/gene="phnM"
/locus_tag="Avi_0287"
/note="Superfamily of metallo-dependent hydrolases (also
called amidohydrolase superfamily) is a large group of
proteins that show conservation in their 3-dimensional
fold (TIM barrel) and in details of their active site. The
vast majority of the members have a...; Region:
metallo-dependent_hydrolases; cl00281"
/db_xref="CDD:206955"
misc_feature 243428..244414
/gene="phnM"
/locus_tag="Avi_0287"
/note="PhnM is believed to be a subunit of the membrane
associated C-P lyase complex. C-P lyase is thought to
catalyze the direct cleavage of inactivated C-P bonds to
yield inorganic phosphate and the corresponding
hydrocarbons. It is responsible for cleavage...; Region:
PhnM; cd01306"
/db_xref="CDD:30049"
misc_feature order(243449..243451,243455..243457,243971..243973,
244187..244189)
/gene="phnM"
/locus_tag="Avi_0287"
/note="active site"
/db_xref="CDD:30049"
gene 244489..245040
/gene="gmk"
/locus_tag="Avi_0288"
/db_xref="GeneID:7387584"
CDS 244489..245040
/gene="gmk"
/locus_tag="Avi_0288"
/codon_start=1
/transl_table=11
/product="guanylate kinase"
/protein_id="YP_002548189.1"
/db_xref="GI:222147232"
/db_xref="GeneID:7387584"
/translation="MIVVVGPSGAGKDSLIAYAKRHFTEQTDAERCPVHFVQRVITRA
ADAGGEDHRPASPSEFDDLKAAGGFAVDWDAHGLSYGIPENVHRWLSSGNVVIANGSR
SVLPRFAQVFPQMLVVNVTARPEVLADRLEARGRESREDILQRLQRSPPDIRGDYPVV
TIDNSGALDEAGRHFIETIEAAL"
misc_feature 244489..245034
/gene="gmk"
/locus_tag="Avi_0288"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 244492..245034
/gene="gmk"
/locus_tag="Avi_0288"
/note="Guanylate kinase; Region: Guanylate_kin; pfam00625"
/db_xref="CDD:201353"
misc_feature order(244504..244506,244519..244530)
/gene="gmk"
/locus_tag="Avi_0288"
/note="active site"
/db_xref="CDD:73295"
gene 245245..245874
/gene="rhtB"
/locus_tag="Avi_0289"
/db_xref="GeneID:7387585"
CDS 245245..245874
/gene="rhtB"
/locus_tag="Avi_0289"
/codon_start=1
/transl_table=11
/product="RhtB family transporter"
/protein_id="YP_002548190.1"
/db_xref="GI:222147233"
/db_xref="GeneID:7387585"
/translation="MTMFAPLFAIAFALLIGAASPGPSFLLVSHTSMTRSRAAGLVTA
LGMGTGGLIFAVLALAGLAALITQFAWLHRVLQVAGGLYLAYIAWKLWRGAAQPVNMD
QTGVAPKSFSRIYLSAFLTQVSNPKTAIVYASIFAALLPPRPDSLLFIMLPGVVFLVE
AGWYSLVALVFSAPIPRRVYLSAKKPLDRLAALVLGGLGLRLVFEGARP"
misc_feature 245302..245808
/gene="rhtB"
/locus_tag="Avi_0289"
/note="LysE type translocator; Region: LysE; cl00565"
/db_xref="CDD:207111"
gene complement(245880..246668)
/locus_tag="Avi_0290"
/db_xref="GeneID:7387586"
CDS complement(245880..246668)
/locus_tag="Avi_0290"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548191.1"
/db_xref="GI:222147234"
/db_xref="GeneID:7387586"
/translation="MSTSSIPSMTKPVDQMTPGEIAMATDSMGRAYEKNRKNAQVGVA
YANLLQMGGRAPQALSVMQQVVIANPNDRQVLAAYGKAQAAAGQLEQALTTIGRAQTP
DRPDWRLYSAQGAVLDQLGRTQEARAAYQQALQIQPNEPSILSNMGMSYLLGGDLKTA
ETYLRSASQQPGADSRVRQNLALVVGLQGRFDEADRIARAELSPDQAEANVAYLRTML
NQQNTWKQLASKDTAQNPARKPAQTPAKDQTPVKDTSLAATPLR"
misc_feature complement(245979..246668)
/locus_tag="Avi_0290"
/note="Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion]; Region:
TadD; COG5010"
/db_xref="CDD:34615"
misc_feature complement(246252..246533)
/locus_tag="Avi_0290"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cl02429"
/db_xref="CDD:207591"
misc_feature complement(order(246270..246272,246279..246281,
246291..246293,246327..246329,246372..246374,
246381..246383,246393..246395,246429..246431,
246474..246476,246483..246485,246495..246497,
246531..246533))
/locus_tag="Avi_0290"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature complement(order(246309..246314,246321..246326,
246333..246338,246414..246419,246426..246431,
246435..246440,246525..246530))
/locus_tag="Avi_0290"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(246087..246344)
/locus_tag="Avi_0290"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(order(246105..246110,246117..246122,
246129..246134,246210..246215,246222..246227,
246231..246236,246321..246326,246333..246338,
246342..246344))
/locus_tag="Avi_0290"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(order(246087..246089,246123..246125,
246168..246170,246177..246179,246189..246191,
246225..246227,246270..246272,246279..246281,
246291..246293,246327..246329))
/locus_tag="Avi_0290"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene 247054..248442
/locus_tag="Avi_0292"
/db_xref="GeneID:7387587"
CDS 247054..248442
/locus_tag="Avi_0292"
/codon_start=1
/transl_table=11
/product="leucine aminopeptidase"
/protein_id="YP_002548192.1"
/db_xref="GI:222147235"
/db_xref="GeneID:7387587"
/translation="MAPYQYIERPTPFLTKGGKSLPIFAVTPAHIETGAIDPLALDWA
KKAGYKADVGSLLLIPTSDGQLGGALFGLGSAPGENPFLAGKLARALPAGDWHIETAP
LTANRLVLGYGLGSYRFERYKADRSDHPKLLMPQDADASDIARQLAGVFLARDLINTP
TNDMGPADLEKTFRALADHYKAEVSVVIGDELLHRNFPLVHTVGRASAQAPRLLEMRW
GKKGHKKITLVGKGVCFDTGGLDIKPSSSMLLMKKDMGGAANVLGLALMIMDAKLKVD
LRVIVPAVENSIAGNAFRPGDIYTSRQGLTVQIDNTDAEGRLILADALTYADEEEPDL
LIDMATLTGAARVALGPDVPAFFSNDDALAYELTDSSLETDDPIWRLPLFPGYEKMVR
SQIADLTNAPAGGMAGAITAALFLKRFVTRTTSWAHFDIFGWASQERPHSPVGGEAQA
IRALYRYIAALK"
misc_feature 247069..248436
/locus_tag="Avi_0292"
/note="Leucyl aminopeptidase [Amino acid transport and
metabolism]; Region: PepB; COG0260"
/db_xref="CDD:30609"
misc_feature 247156..248427
/locus_tag="Avi_0292"
/note="Cytosol aminopeptidase family, N-terminal and
catalytic domains. Family M17 contains zinc- and
manganese-dependent exopeptidases ( EC 3.4.11.1),
including leucine aminopeptidase. They catalyze removal of
amino acids from the N-terminus of a protein and...;
Region: Peptidase_M17; cd00433"
/db_xref="CDD:48344"
misc_feature order(247189..247194,247231..247233,247525..247527,
247531..247539,247669..247671,247675..247677,
247756..247758,247774..247776,247789..247791,
247798..247800,247807..247812,247906..247908,
247912..247923,247927..247929,247933..247947,
247963..247965,247969..247971,247981..247983,
248089..248103,248110..248112,248188..248193,
248197..248199,248212..248214,248218..248223,
248236..248238,248242..248244,248272..248277,
248281..248283,248383..248385)
/locus_tag="Avi_0292"
/note="interface (dimer of trimers) [polypeptide binding];
other site"
/db_xref="CDD:48344"
misc_feature order(247744..247746,247759..247761,247780..247782,
247813..247815,247990..247992,247996..247998,
248002..248004,248074..248076)
/locus_tag="Avi_0292"
/note="Substrate-binding/catalytic site; other site"
/db_xref="CDD:48344"
misc_feature order(247744..247746,247759..247761,247813..247815,
247990..247992,247996..247998)
/locus_tag="Avi_0292"
/note="Zn-binding sites [ion binding]; other site"
/db_xref="CDD:48344"
gene 249043..249738
/locus_tag="Avi_0293"
/db_xref="GeneID:7387588"
CDS 249043..249738
/locus_tag="Avi_0293"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548193.1"
/db_xref="GI:222147236"
/db_xref="GeneID:7387588"
/translation="MNFNVRKIVINSAFIGMATGFGGLTIGGVSTASAQDAQTAPPAG
VYKLDPTHANLTWTVKHNTISNYTARFGKLEATLSLDPAKIEASKIEVTIDPTSVDVP
YPADYKATHAKSPYATWPEEISKDPKKLNSDAFPKITFTSTSVKKTGDKTAEILGNLT
FLGVTKPVTLNATLNGSIDSHPFAGVPAIGFAAEGTFDRTAFGQPVGYVGKDVTIRFD
GEFIQDPAASPSK"
misc_feature 249124..249651
/locus_tag="Avi_0293"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG2353"
/db_xref="CDD:32500"
gene 250049..251299
/locus_tag="Avi_0295"
/db_xref="GeneID:7387589"
CDS 250049..251299
/locus_tag="Avi_0295"
/codon_start=1
/transl_table=11
/product="cytochrome b561"
/protein_id="YP_002548194.1"
/db_xref="GI:222147237"
/db_xref="GeneID:7387589"
/translation="MVRALKKPETQQLAYQLFQIHKSIGFAILALTVLRIVWRATHKP
PVLPSGMKLWERFLANATHIAFYGMMLILPLTGWIYVSSGWAIATDRPLDVATSWFGL
FLIPHLPGLEGNRSLAFGAMGAHSYMAYGGAALIVLHVAAALKHHFIERDGVLVQMVP
FLRTGKVAHSASGKGKTSGLSHGFGLALVVMAAAIGWVMHMPPPLAEQPSAVEAQAEP
PAVAPQSSANVSQANPAQTTSAQAAPVQAATAPVWAIDMASSSIGFGGTHAGNAFNGR
FEEWSGDIRFDPANLAGSKAVILVKTASAKTGDATQEGSLKNGEWLNSTRFPEAKFET
TEFRALGGDRYEARGTLSIKNKPLPVVLPFSLKMEGNKAQVEGALELDRAALNLGMFS
DPSAEWVSKSINVNIVVNATKTGS"
misc_feature 250049..250537
/locus_tag="Avi_0295"
/note="Cytochrome B561 [Energy production and conversion];
Region: CybB; COG3038"
/db_xref="CDD:32852"
misc_feature 250805..251224
/locus_tag="Avi_0295"
/note="YceI-like domain; Region: YceI; smart00867"
/db_xref="CDD:197935"
gene 251390..251740
/locus_tag="Avi_0296"
/db_xref="GeneID:7387590"
CDS 251390..251740
/locus_tag="Avi_0296"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548195.1"
/db_xref="GI:222147238"
/db_xref="GeneID:7387590"
/translation="MSLELTATAALGLWHHVTLRQVQEDGRDLTLRQLSILLHIYLVP
PPHTVRGLAATLKVTKPVITRALDTMGGMGFVDRVRDDMDKRNVIIKRTVAGALYLEK
FGDLIIEQARGMRT"
misc_feature 251474..251653
/locus_tag="Avi_0296"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
gene 251743..252603
/locus_tag="Avi_0297"
/db_xref="GeneID:7387591"
CDS 251743..252603
/locus_tag="Avi_0297"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548196.1"
/db_xref="GI:222147239"
/db_xref="GeneID:7387591"
/translation="MQLDRRLNAYRPDLADSALRGQVEAERYVSGTPARIAVPVIALR
PRPDFACGIDTEVLLGEEVTVFDRADGWAWVKADLDGYVGYLPETAIAAIEAPPTHWI
TVPRSFLYTGPDLRYPNARTISMGSRVTVTSEAETRGTRYFLLSDGHAVIADHCRSLG
TPAGEDYVAIAARFLETPYLWGGRSGLGIDCSGLVQLSMQMCGLSAPRDSDMQAAGLG
SPIDRSELRRGDLIFWKGHAGIMEDERTLLHANGHTMSVAREDVDAAIARIGWLYEQP
TGYRRPERIA"
misc_feature 252052..252582
/locus_tag="Avi_0297"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:31134"
misc_feature 252271..>252498
/locus_tag="Avi_0297"
/note="NlpC/P60 family; Region: NLPC_P60; cl11438"
/db_xref="CDD:209322"
gene complement(252729..255707)
/gene="polA"
/locus_tag="Avi_0299"
/db_xref="GeneID:7387592"
CDS complement(252729..255707)
/gene="polA"
/locus_tag="Avi_0299"
/note="has 3'-5' exonuclease, 5'-3' exonuclease and
5'-3'polymerase activities, primarily functions to fill
gaps during DNA replication and repair"
/codon_start=1
/transl_table=11
/product="DNA polymerase I"
/protein_id="YP_002548197.1"
/db_xref="GI:222147240"
/db_xref="GeneID:7387592"
/translation="MKKGDHLFLVDGSGFIFRAFHALPALTRKSDGLPVGAVSGFCNM
MWKLLTEARDTSVGVTPTHLAVIFDYSSKTFRKDLYPEYKANRSAPPEDLVPQFGLIR
QATRAFNLPCIETEGFEADDIIATYARAAEAIGADVTIVSSDKDLMQLVTANVHMYDS
MKDKQIGIPDVIEKWGVPPEKMIDLQSLTGDSTDNIPGIPGIGPKTAAQLLEEYGDLD
TLMARASEIKQNKRRENILAGAELVKLSRQLVTLRTDVPLDMPLDALMLEKQDGPKLV
AFLKAMEFTSLTRRVADNCDCDAGAIEPATISVEWGASARGPDLDAGAAAQTPASGQE
AGPTAQSAKAEGATPADLAAARQSAFGGQPIDRSAYVTIRDLPTLEGWIAAAREAGFV
AFDTETTSLDPMQADLVGVSLALQDNAASPGAATIRAAYVPLGHKTGRDDLFSDGLKL
AENQIPMDAALTALKGLLEDASVLKVAQNLKYDYLVMKRHGIVIRGFDDTMLLSYVLE
AGVGAHGMDSLSERWLGHTPIPYKEVAGSGKSLVTFDLVDIDKATAYAAEDADVTLRL
WLVLKPRLAAVGLARVYERLERPLVPVLADMEERGITIDRQILSRLSGELAQKAAAFE
DEIYELAGERFNVGSPKQLGDILFGRMNLPGGSKTKTGQWSTSAQVLEDLAAQGEPLP
RKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYSMAATTTGRLSSSEPNLQNIPVR
TAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASE
MFGVPVDGMPSEVRRRAKAINFGIIYGISAFGLANQLSIERAEAGEYIKKYFERFPGI
KDYMESTKAFVREHGYVETIFGRRAHYPEIKSSNPSMRAFNERAAINAPIQGSAADVI
RRAMVQVEPALAKAGLGEKTRMLLQVHDELIFEVEDEAIEAALPVIVSTMENAAMPAI
AMRVPLKVDARAADNWDEAH"
misc_feature complement(252732..255689)
/gene="polA"
/locus_tag="Avi_0299"
/note="DNA polymerase I; Region: pola; TIGR00593"
/db_xref="CDD:161944"
misc_feature complement(255189..255689)
/gene="polA"
/locus_tag="Avi_0299"
/note="PIN domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: PIN_53EXO; cd09859"
/db_xref="CDD:189029"
misc_feature complement(order(255270..255272,255276..255278,
255342..255347,255351..255353,255501..255503,
255675..255677))
/gene="polA"
/locus_tag="Avi_0299"
/note="active site"
/db_xref="CDD:189029"
misc_feature complement(order(255276..255278,255345..255347,
255675..255677))
/gene="polA"
/locus_tag="Avi_0299"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature complement(255447..255485)
/gene="polA"
/locus_tag="Avi_0299"
/note="putative 5' ssDNA interaction site; other site"
/db_xref="CDD:189029"
misc_feature complement(order(255342..255344,255351..255353))
/gene="polA"
/locus_tag="Avi_0299"
/note="metal binding site 3; metal-binding site"
/db_xref="CDD:189029"
misc_feature complement(order(255270..255272,255276..255278))
/gene="polA"
/locus_tag="Avi_0299"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:189029"
misc_feature complement(254952..255173)
/gene="polA"
/locus_tag="Avi_0299"
/note="H3TH domain of the 5'-3' exonuclease of Taq DNA
polymerase I and homologs; Region: H3TH_53EXO; cd09898"
/db_xref="CDD:188618"
misc_feature complement(order(255072..255083,255087..255116,
255120..255143))
/gene="polA"
/locus_tag="Avi_0299"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:188618"
misc_feature complement(order(255126..255128,255135..255137))
/gene="polA"
/locus_tag="Avi_0299"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:188618"
misc_feature complement(253920..254552)
/gene="polA"
/locus_tag="Avi_0299"
/note="DEDDy 3'-5' exonuclease domain of Escherichia coli
DNA polymerase I and similar bacterial family-A DNA
polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139"
/db_xref="CDD:176651"
misc_feature complement(order(254031..254033,254043..254045,
254112..254117,254160..254165,254259..254267,
254271..254276,254505..254507,254514..254525))
/gene="polA"
/locus_tag="Avi_0299"
/note="active site"
/db_xref="CDD:176651"
misc_feature complement(order(254031..254033,254043..254045,
254259..254261,254517..254519,254523..254525))
/gene="polA"
/locus_tag="Avi_0299"
/note="catalytic site [active]"
/db_xref="CDD:176651"
misc_feature complement(order(254031..254033,254043..254045,
254112..254117,254160..254165,254262..254267,
254271..254276,254505..254507,254514..254522))
/gene="polA"
/locus_tag="Avi_0299"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176651"
misc_feature complement(252741..253895)
/gene="polA"
/locus_tag="Avi_0299"
/note="Polymerase I functions primarily to fill DNA gaps
that arise during DNA repair, recombination and
replication; Region: DNA_pol_A_pol_I_C; cd08637"
/db_xref="CDD:176474"
misc_feature complement(order(252882..252890,252987..252989,
253008..253010,253260..253262,253272..253274,
253332..253334,253416..253421,253515..253526,
253530..253532,253536..253544,253617..253622,
253629..253631,253641..253643))
/gene="polA"
/locus_tag="Avi_0299"
/note="active site"
/db_xref="CDD:176474"
misc_feature complement(order(252882..252890,252987..252989,
252999..253001,253008..253013,253236..253238,
253515..253526,253530..253532,253536..253544,
253617..253622,253629..253631,253641..253643))
/gene="polA"
/locus_tag="Avi_0299"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176474"
misc_feature complement(order(252882..252884,253260..253262,
253272..253274,253332..253334,253410..253412,
253416..253421))
/gene="polA"
/locus_tag="Avi_0299"
/note="catalytic site [active]"
/db_xref="CDD:176474"
gene 256094..256543
/locus_tag="Avi_0300"
/db_xref="GeneID:7388671"
CDS 256094..256543
/locus_tag="Avi_0300"
/codon_start=1
/transl_table=11
/product="transcriptional regulator MarR family"
/protein_id="YP_002548198.1"
/db_xref="GI:222147241"
/db_xref="GeneID:7388671"
/translation="MLFDRRQSPTYLVSQLAKEFARALQVRAEGLGFSAGQFPILLEL
WEEQGLTQKQLLERVAVEQATMANTLSRMERDGLIERKPHPSDRRAQLVFLTAKGEGL
RDQAISAACEADDALFHGFRRFEKELMLEFIRQALENARSSDKSSNI"
misc_feature 256184..256456
/locus_tag="Avi_0300"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature 256190..256360
/locus_tag="Avi_0300"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
gene 256616..258004
/gene="dapE"
/locus_tag="Avi_0301"
/db_xref="GeneID:7387758"
CDS 256616..258004
/gene="dapE"
/locus_tag="Avi_0301"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548199.1"
/db_xref="GI:222147242"
/db_xref="GeneID:7387758"
/translation="MTDLAPILAEADKALPQSLDRLFDLVRIASISTDPAYKADCRKA
AEWLAQELKGLGFNASVRDTPGHPMVVGHHDADRPDAPHVLFYGHYDVQPVDPLDLWE
NDPFEPAIKEIEPGRKVITGRGTSDDKGQLMTFVEACRAYKAVHGGLPIKITILFEGE
EESGSPSLKPFLAANEDELKCDFALVCDTGMWDRETPAIAAALRGLVGEEVTVTAADR
DLHSGLFGGAAANPIHILAKVLADLHDETGRVTIDGFYEGVEETPVNIKASWEKLGRT
ADKFLNDVGLSIPSGETGRSVLELTWARPTAEVNGITGGYTGEGFKTVIASKASAKVS
FRLVGEQDPAKIRENFRAFVKARIPGDCSVEFHEHGASPAIQLPYDSPFLTKAKSALS
DEWPKPAEVIGMGGSIPIVGDFQTMLGMDSLLVGFGLVDDRIHSPNEKYELESFHKGI
RSWIRILDALAH"
misc_feature 256616..258001
/gene="dapE"
/locus_tag="Avi_0301"
/note="hypothetical protein; Validated; Region: PRK09104"
/db_xref="CDD:181650"
misc_feature 256670..257995
/gene="dapE"
/locus_tag="Avi_0301"
/note="Uncharacterized M20 Dipeptidases; Region:
M20_dipept_like_3; cd05680"
/db_xref="CDD:193555"
misc_feature order(256880..256882,256994..256996,257096..257101,
257177..257179,257918..257920)
/gene="dapE"
/locus_tag="Avi_0301"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193555"
misc_feature order(257225..257227,257237..257239,257243..257245,
257255..257272,257276..257296,257312..257320,
257324..257326,257333..257338,257345..257347,
257423..257425,257504..257506,257513..257518,
257531..257554,257567..257590,257609..257611,
257615..257617,257621..257623,257828..257833,
257915..257926)
/gene="dapE"
/locus_tag="Avi_0301"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:193555"
gene 258465..258923
/locus_tag="Avi_0303"
/db_xref="GeneID:7387759"
CDS 258465..258923
/locus_tag="Avi_0303"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548200.1"
/db_xref="GI:222147243"
/db_xref="GeneID:7387759"
/translation="MSLTSVQDFFSAHAPDITVIETEQSSATVPLAALAHGVEPDQIA
KTLCLRVGDVIMLVVAAGERRLDNKKFKERFGGKPRMLGAEEVVALTGHPVGGVCPFG
LATPLPVFCDTSLQRFDIVVPAAGATNSAVKIAPQRIVDLTGAEWVDVCQ"
misc_feature 258471..258914
/locus_tag="Avi_0303"
/note="This CD, composed mainly of bacterial single-domain
proteins, includes the Thermus thermophilus (Tt) YbaK-like
protein, a homolog of the trans-acting Escherichia coli
YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium
tumefaciens ProX Ala-tRNA(Pro)...; Region:
ProX_deacylase; cd04333"
/db_xref="CDD:88584"
misc_feature order(258597..258599,258750..258755,258834..258836)
/locus_tag="Avi_0303"
/note="putative deacylase active site [active]"
/db_xref="CDD:88584"
gene complement(259052..259375)
/locus_tag="Avi_0304"
/db_xref="GeneID:7387760"
CDS complement(259052..259375)
/locus_tag="Avi_0304"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548201.1"
/db_xref="GI:222147244"
/db_xref="GeneID:7387760"
/translation="MADTTRMQAEMRELQAQIAQLKDKLAEQGHSVADQVRGTTSHAL
SNAARSAQDVARYAKDEATSVAGIVREHPTATSTALLGIALVGAFIGYLVASQSTPEP
RRRWY"
misc_feature complement(259091..259360)
/locus_tag="Avi_0304"
/note="Bacterial protein of unknown function (DUF883);
Region: DUF883; cl01888"
/db_xref="CDD:207496"
gene 259590..262091
/gene="pbpC"
/locus_tag="Avi_0305"
/db_xref="GeneID:7387761"
CDS 259590..262091
/gene="pbpC"
/locus_tag="Avi_0305"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein"
/protein_id="YP_002548202.1"
/db_xref="GI:222147245"
/db_xref="GeneID:7387761"
/translation="MAGMKKSRNRIEPRLGDAENEDGDEIRLDSNDRVLGGRSASGGK
KMPATSSKRSREVADPRPKREKVQSGGLFGGIRRLFYWCVVLGIWGTIGVVGLVIYFA
AQMPSASSWTVPARAPNIKIVSVDGALIANRGVTGGEALSIDEMSPYLPEAIVAIEDK
RFYHHFGVDFIGVGRAFVTNILLGHKAQGGSTITQQLARNLFLSPKKTFERKVQEVLL
SLWLEQKYTKDQILAMYLNRVYFGDNAYGVEAASRRYFNTSARDVNLGEAALLAGLVQ
APSRLSPVNDPKPAQDRAKVVLGAMREQGYITDSDFDRAMKQSPDHAKRQADGAGQYV
ADMVAGQLKGLIGEVKQDIVVTTTIDPTLEDAAQAAIAATLDKDGKKSNASQAALVAI
DGNGAVRALVGGRDYATSQFNRAVTAKRQPGSAFKPFVYAAAMEIGDTPSTVRNDGPV
KIGNWTPENYEQKYNGPVTLSYALAHSLNTVAAQLVMEVGPDQVIKLAHRLGVESDLQ
SNASIALGTSEVSLLELTAAYAPFMNGGYKATPHVISQIADADGKVLYTADYGEPPRV
LNQQVVGQMTRMMESVMTEGTGKAAKLKNWQAAGKTGTTQSFRDALFVGFTSNLTTGV
WFGNDDGAPMKKVTGGGLPAKTWKDFMTVAHKGLTPVPLFGDPTPQTEESPSLTTMIQ
QVLSGTPSTPAPADQENSYPPAPPAPANTPGPLSGNAPGIQPGDANPAYPPQARQMPN
QNPGQLPGQAPLQPRPPVNPRDGAVLEGRVPPGALRSNNPMPEDGYPGEDPDSNPYGA
DGGYAPPADVGEGQQPRAQSHGDGKTTLLDVIMGR"
misc_feature 259965..260495
/gene="pbpC"
/locus_tag="Avi_0305"
/note="Transglycosylase; Region: Transgly; pfam00912"
/db_xref="CDD:201501"
misc_feature 260001..261560
/gene="pbpC"
/locus_tag="Avi_0305"
/note="penicillin-binding protein, 1A family; Region:
PBP_1a_fam; TIGR02074"
/db_xref="CDD:211713"
misc_feature 260748..261542
/gene="pbpC"
/locus_tag="Avi_0305"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:144486"
gene 262413..264329
/gene="dnaK"
/locus_tag="Avi_0306"
/db_xref="GeneID:7387762"
CDS 262413..264329
/gene="dnaK"
/locus_tag="Avi_0306"
/note="heat shock protein 70; assists in folding of
nascent polypeptide chains; refolding of misfolded
proteins; utilizes ATPase activity to help fold;
co-chaperones are DnaJ and GrpE; multiple copies in some
bacteria"
/codon_start=1
/transl_table=11
/product="molecular chaperone DnaK"
/protein_id="YP_002548203.1"
/db_xref="GI:222147246"
/db_xref="GeneID:7387762"
/translation="MAKVIGIDLGTTNSCVSVMDGKDAKVIENSEGARTTPSMVAFSD
DGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKGLVPFPIIKGDNGDAW
VEAQGKGYSPAQISAMILQKMKETAEAYLGEKVEKAVITVPAYFNDAQRQATKDAGRI
AGLEVLRIINEPTAAALAYGLDKTEGKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNG
DTFLGGEDFDMRLVEYLAAEFKKEQGIELKNDKLALQRLKEAAEKAKIELSSSQQTEI
NLPFITADASGPKHLTMKLTRAKFENLVDDLVQRTVAPCKAALKDAGVTAADIDEVVL
VGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVAMGAAIQAGVLQGDVKDVLLLDVTPL
SLGIETLGGVFTRLIDRNTTIPTKKSQVFSTADDNQQAVTIRVSQGEREMAQDNKLLG
QFDLVGLPPSPRGVPQIEVTFDIDANGIVQVSAKDKGTGKEQQIRIQASGGLSDADIE
KMVKDAEANAEADKNRRAVVEAKNQAESLIHSTEKSVKDYGDKVSADDRKAIEDAIAA
LKSSIETSEPNAEDIQAKTQTLMEVSMKLGQAIYESQQAEGGAEGGPSGHHDDGIVDA
DYEEVKDDNTKKSA"
misc_feature 262413..264311
/gene="dnaK"
/locus_tag="Avi_0306"
/note="molecular chaperone DnaK; Provisional; Region:
dnaK; PRK00290"
/db_xref="CDD:178963"
misc_feature 262413..263543
/gene="dnaK"
/locus_tag="Avi_0306"
/note="Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins; Region:
HSPA9-like_NBD; cd11733"
/db_xref="CDD:212683"
misc_feature order(262440..262451,262620..262622,262923..262925,
262995..263000,263004..263006,263082..263084,
263196..263198,263205..263207,263217..263219,
263418..263426,263430..263432)
/gene="dnaK"
/locus_tag="Avi_0306"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212683"
misc_feature order(262494..262496,262503..262505,262557..262559,
262569..262571,262578..262583,262587..262592,
262797..262808,263166..263168,263175..263180,
263187..263189,263241..263243,263247..263252)
/gene="dnaK"
/locus_tag="Avi_0306"
/note="NEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212683"
misc_feature order(262854..262859,262863..262868,262911..262916,
262920..262922,263043..263054)
/gene="dnaK"
/locus_tag="Avi_0306"
/note="SBD interface [polypeptide binding]; other site"
/db_xref="CDD:212683"
gene 264329..264790
/locus_tag="Avi_0307"
/db_xref="GeneID:7387763"
CDS 264329..264790
/locus_tag="Avi_0307"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548204.1"
/db_xref="GI:222147247"
/db_xref="GeneID:7387763"
/translation="MRNSRRHTFVRWLAFGPAAFALAGCLAAHAAAGADVHQKVSAAE
ASILQAIAKRDTALLRRTVGGLGPLIEDALKRKKSGGQVSSCDLAAHSLGFAGMSLSE
AVTQKGAARKMLMDDARQAAADFNRDMSACDAQVGQKTSNHAGVEKALRAL"
gene 264795..265937
/gene="dnaJ"
/locus_tag="Avi_0308"
/db_xref="GeneID:7387764"
CDS 264795..265937
/gene="dnaJ"
/locus_tag="Avi_0308"
/note="chaperone Hsp40; co-chaperone with DnaK;
Participates actively in the response to hyperosmotic and
heat shock by preventing the aggregation of
stress-denatured proteins and by disaggregating proteins,
also in an autonomous, dnaK-independent fashion"
/codon_start=1
/transl_table=11
/product="chaperone protein DnaJ"
/protein_id="YP_002548205.1"
/db_xref="GI:222147248"
/db_xref="GeneID:7387764"
/translation="MAKADFYETLGVSKTADEKELKSAFRKLAMKFHPDKNPGDAESE
RKFKEINEAYETLKDPQKRAAYDRFGHAAFEQGGMGSAGGGGGFAGGGFSDIFEDIFG
EMMGGGRGGNARGRSTGGRERGADLRYNMEISLEEAFTGKTAQIRVPTSITCEVCSGS
GAKPGTKPTTCATCQGSGRVRAAQGFFSIERTCPTCQGRGQTISDPCGKCHGQGRVTE
ERQLSVSIPSGIEDGTRIRLQGEGEAGLRGGPSGDLYIFLSVKPHQFFQREGADLYCS
VPISMTTAALGGTFDVTTLDGTKSRVTVPEGTQPGKQFRLKGKGMPVLRSAQMGDLYI
QIQIETPQKLTKRQRELLQEFDQISSKENNPESTGFFARMKEFFEG"
misc_feature 264795..265931
/gene="dnaJ"
/locus_tag="Avi_0308"
/note="chaperone protein DnaJ; Provisional; Region:
PRK10767"
/db_xref="CDD:182712"
misc_feature 264807..264971
/gene="dnaJ"
/locus_tag="Avi_0308"
/note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play crucial
roles in protein translation, folding, unfolding,
translocation, and degradation. They act primarily by
stimulating the ATPase activity of Hsp70s; Region: DnaJ;
cd06257"
/db_xref="CDD:99751"
misc_feature order(264891..264899,264924..264926,264933..264938,
264945..264950)
/gene="dnaJ"
/locus_tag="Avi_0308"
/note="HSP70 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:99751"
misc_feature 265167..>265253
/gene="dnaJ"
/locus_tag="Avi_0308"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cl03262"
/db_xref="CDD:207897"
misc_feature order(265179..265181,265224..265241)
/gene="dnaJ"
/locus_tag="Avi_0308"
/note="substrate binding site [polypeptide binding]; other
site"
/db_xref="CDD:199909"
misc_feature 265254..265436
/gene="dnaJ"
/locus_tag="Avi_0308"
/note="Zinc finger domain of DnaJ and HSP40; Region:
DnaJ_zf; cd10719"
/db_xref="CDD:199908"
misc_feature order(265254..265256,265263..265265,265305..265307,
265314..265316,265371..265373,265380..265382,
265413..265415,265422..265424)
/gene="dnaJ"
/locus_tag="Avi_0308"
/note="Zn binding sites [ion binding]; other site"
/db_xref="CDD:199908"
misc_feature 265437..265826
/gene="dnaJ"
/locus_tag="Avi_0308"
/note="C-terminal substrate binding domain of DnaJ and
HSP40; Region: DnaJ_C; cd10747"
/db_xref="CDD:199909"
misc_feature order(265635..265640,265647..265652,265713..265724,
265812..265826)
/gene="dnaJ"
/locus_tag="Avi_0308"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:199909"
gene complement(265979..266203)
/locus_tag="Avi_0309"
/db_xref="GeneID:7387765"
CDS complement(265979..266203)
/locus_tag="Avi_0309"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548206.1"
/db_xref="GI:222147249"
/db_xref="GeneID:7387765"
/translation="MASAKDADAEDRLIRLEETVAYQAKTIEELSDQLTEQWKVVEQT
RAKLDRLTERFLSLEEQAADSVPITKPPHY"
misc_feature complement(265982..266182)
/locus_tag="Avi_0309"
/note="hypothetical protein; Provisional; Region:
PRK00736"
/db_xref="CDD:179103"
gene 266366..267490
/gene="recF"
/locus_tag="Avi_0311"
/db_xref="GeneID:7387766"
CDS 266366..267490
/gene="recF"
/locus_tag="Avi_0311"
/note="Required for DNA replication; binds preferentially
to single-stranded, linear DNA"
/codon_start=1
/transl_table=11
/product="recombination protein F"
/protein_id="YP_002548207.1"
/db_xref="GI:222147250"
/db_xref="GeneID:7387766"
/translation="MAEKTFINRLQLTDFRNYGSASLRLDGRHVVLTGNNGSGKTNLM
EAVSFLSPGRGLRRAVLSDVARAGAASGFSIFASLEGMAGDVELGTGSEVLDETAVRR
LRINGASVRSVDELTDHLRVLWLTPAMDGLFTGSSSERRRFLDRLVLSIDPQHGRRAS
DFERAMRSRNKLLSEGRFDASWLAGIEQQMAALGIAMALARQEMMRLLAALIEQRREP
ETFPGADLMLSGFMDEHAGTAAIDLEDTYRDSLAGSRGRDAAAGRTLEGPHRSDLLVR
HREKDMEAERCSTGEQKALLIGLILAHAELVATMTGFAPILLLDEIAAHLDEGRRAAL
FDRIDVLGGQAFMTGTDAQMFASLGDRAQFVTVDDGHLSL"
misc_feature 266381..267484
/gene="recF"
/locus_tag="Avi_0311"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature 266384..>266887
/gene="recF"
/locus_tag="Avi_0311"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 266465..266488
/gene="recF"
/locus_tag="Avi_0311"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(266474..266479,266483..266491,266744..266746)
/gene="recF"
/locus_tag="Avi_0311"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 266735..266746
/gene="recF"
/locus_tag="Avi_0311"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature <267158..267484
/gene="recF"
/locus_tag="Avi_0311"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 267224..267253
/gene="recF"
/locus_tag="Avi_0311"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 267311..267328
/gene="recF"
/locus_tag="Avi_0311"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 267335..267346
/gene="recF"
/locus_tag="Avi_0311"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 267404..267424
/gene="recF"
/locus_tag="Avi_0311"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 267526..268296
/gene="moeB"
/locus_tag="Avi_0312"
/db_xref="GeneID:7387767"
CDS 267526..268296
/gene="moeB"
/locus_tag="Avi_0312"
/note="ATP-dependent adenylate transferase, transfers
adenyl moiety to the MoeD subunit of molybdopterin
synthase"
/codon_start=1
/transl_table=11
/product="molybdopterin biosynthesis protein MoeB"
/protein_id="YP_002548208.1"
/db_xref="GI:222147251"
/db_xref="GeneID:7387767"
/translation="METLSSEEIQRYQRHILLPEIGGAGQQKLKAARVLVIGAGGLGA
PVLQYLAAAGIGTLGIADDDHVSLSNLQRQVIHDSGTLHDLKTESAAKAIARLNPHVR
VMRFEQRFDADFAATHLPGFDLLIDGSDNFDSRYAAADAGQQHCRPLVTGAVGRFEGS
LTVLKPYETGPDGVLYPGYRDLFPEKPPAGLIPTCAETGIIGALTGVIGTLMAMEAIK
LITGIGEPLVGRLLMYDALSARFDTVRYRRRDSNRSAP"
misc_feature 267526..268278
/gene="moeB"
/locus_tag="Avi_0312"
/note="molybdopterin biosynthesis protein MoeB;
Provisional; Region: PRK05690"
/db_xref="CDD:180204"
misc_feature 267556..268260
/gene="moeB"
/locus_tag="Avi_0312"
/note="ThiF_MoeB_HesA. Family of E1-like enzymes involved
in molybdopterin and thiamine biosynthesis family. The
common reaction mechanism catalyzed by MoeB and ThiF, like
other E1 enzymes, begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD...; Region:
ThiF_MoeB_HesA_family; cd00757"
/db_xref="CDD:30111"
misc_feature order(267637..267639,267643..267645,267649..267651,
267709..267711,267715..267717,267742..267744,
267781..267783,267907..267909,267925..267927)
/gene="moeB"
/locus_tag="Avi_0312"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:30111"
misc_feature order(267649..267651,267910..267918,267928..267930,
267982..267987,267997..267999,268003..268005,
268216..268218,268228..268230,268249..268251,
268255..268260)
/gene="moeB"
/locus_tag="Avi_0312"
/note="substrate interface [chemical binding]; other site"
/db_xref="CDD:30111"
gene 268339..268815
/locus_tag="Avi_0313"
/db_xref="GeneID:7387768"
CDS 268339..268815
/locus_tag="Avi_0313"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548209.1"
/db_xref="GI:222147252"
/db_xref="GeneID:7387768"
/translation="MVEIIQIDEHFENWDDLLALVLEAFDYMHPLIDPPSSALKLTAE
ALKAKAHEEIGYAALIDGKLVGCLFCRQSEADRLYVGKVAVLPGLQGQGIGRAMLKAA
EGVAHACGVRHLQLETRIELDNNHKRFEKWGFHVVGEKSHPGYDRATFVLMEKPLL"
misc_feature 268504..268689
/locus_tag="Avi_0313"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(268585..268593,268621..268626)
/locus_tag="Avi_0313"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(268894..269898)
/locus_tag="Avi_0314"
/db_xref="GeneID:7387769"
CDS complement(268894..269898)
/locus_tag="Avi_0314"
/codon_start=1
/transl_table=11
/product="D-isomer specific 2-hydroxyacid dehydrogenases
family protein"
/protein_id="YP_002548210.1"
/db_xref="GI:222147253"
/db_xref="GeneID:7387769"
/translation="MTQRKKTKVYITRKLPDAVETRMRELFEAELNIDDTPRSRDALM
DAVKTCDVLVPTVTDRIDAGLIEAAGPQLKLIASFSNGTDHIDVDAAARKGITVTNTP
NVLSEDTADMTMALILAGPRRLAEGSRILTDQPGEWAGWSPTWMLGRRIWGKRIGIVG
MGRIGTAVARRAKAFGLAIHYHNRKRVSPQTEDELEATYWDSLDQMLARVDIVSVNCP
STPATYHLLSARRLALMQPTSYIVNTARGGIIDESALIQCIRDGKIAGAGLDVFENEP
AVNPKLLKLAEDGKVVLLPHMGSATIEGRIDMGDKVIINIRTYFDGHRPPNRVLPGRD
"
misc_feature complement(268903..269886)
/locus_tag="Avi_0314"
/note="Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism /
General function prediction only]; Region: LdhA; COG1052"
/db_xref="CDD:31252"
misc_feature complement(269005..269559)
/locus_tag="Avi_0314"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
gene 270187..270726
/locus_tag="Avi_0315"
/db_xref="GeneID:7387770"
CDS 270187..270726
/locus_tag="Avi_0315"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548211.1"
/db_xref="GI:222147254"
/db_xref="GeneID:7387770"
/translation="MPNGFKRSCLIPFIAALCVIWAGAAVAQGPTKGMSGLPLPRFVT
LKSARVNLRIGPSTDYATSWMYTRAGLPVEIIQEYDNWRRIRDADGTEGWVNQTLLSG
ERSALAAPWMKGKGDNIYVNMRREGQAGAGVVAKLQPGVLIKLLECNGNWCRAEVDGT
KGWVAQGEIWGAYPGEAFK"
misc_feature 270226..270723
/locus_tag="Avi_0315"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3807"
/db_xref="CDD:33601"
misc_feature 270322..270492
/locus_tag="Avi_0315"
/note="Bacterial SH3 domain; Region: SH3_4; pfam06347"
/db_xref="CDD:115031"
misc_feature 270547..270699
/locus_tag="Avi_0315"
/note="Bacterial SH3 domain; Region: SH3_4; pfam06347"
/db_xref="CDD:115031"
gene complement(270770..271762)
/locus_tag="Avi_0316"
/db_xref="GeneID:7387771"
CDS complement(270770..271762)
/locus_tag="Avi_0316"
/codon_start=1
/transl_table=11
/product="pfkB family carbohydrate kinase"
/protein_id="YP_002548212.1"
/db_xref="GI:222147255"
/db_xref="GeneID:7387771"
/translation="MTQFDVLTIGNAIVDIISRCEDQFLEENGIVKGAMNLIDAERAT
RLYSLMGPAIEASGGSAGNTAAGIASFGGKAAYFGKVAEDELGEIFAHDIRAQGVHYQ
TMAKGQHPPTARCMIFVTEDGERSMNTYLGACVEFGPEDVEPEVVKQAKVTYFEGYLW
DPPRAKQAIVDCARIAHEHGREMSMTLSDSFCVHRYRAEFLDLMRSGTVDIVFANRQE
ALALYETEDFDAALDQIAKDCKLAAVTMSEEGAMIIRGSERIHVPATTIAELVDTTGA
GDLFASGFLYGYTQGRTLEECGKLGCLAAGLVIQQMGPRPLASLQEAAAEAGLI"
misc_feature complement(270815..271753)
/locus_tag="Avi_0316"
/note="Adenosine kinase (AK) catalyzes the phosphorylation
of ribofuranosyl-containing nucleoside analogues at the
5'-hydroxyl using ATP or GTP as the phosphate donor.The
physiological function of AK is associated with the
regulation of extracellular adenosine...; Region:
adenosine_kinase; cd01168"
/db_xref="CDD:29352"
misc_feature complement(270785..271750)
/locus_tag="Avi_0316"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature complement(order(270929..270931,270938..270943,
271190..271192,271289..271291,271370..271372,
271376..271378,271382..271384,271418..271420,
271574..271576,271583..271591,271658..271660,
271718..271720,271724..271726,271730..271732))
/locus_tag="Avi_0316"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29352"
misc_feature complement(order(270836..270838,270848..270850,
270923..270925,270932..270937,270944..270946,
270953..270955,270971..270973,270977..270979,
271010..271012,271019..271024,271028..271030))
/locus_tag="Avi_0316"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29352"
gene complement(271874..273319)
/locus_tag="Avi_0317"
/db_xref="GeneID:7387772"
CDS complement(271874..273319)
/locus_tag="Avi_0317"
/codon_start=1
/transl_table=11
/product="GGDEF family protein"
/protein_id="YP_002548213.1"
/db_xref="GI:222147256"
/db_xref="GeneID:7387772"
/translation="MHRNEAWQLDEFFNVVTITGLLSLIFAARRIGELKAEIRLRNAA
ENNMDWLAHHDALTGLPNRRALSDRQAEMEALQDGRHWVIYSIDLDGFKKVNDLVGHQ
GGDLLLREVAQRLMHALPNADVYRMGGDEFLLVSPRPTNMDYRHAGQHIARLLCNPYD
IGGMTSEIGASVGFALFPEDSDDFKDATHCADVAMYVAKKAGQNSVYGFERIMEDRVM
RRAETEMALKRAIRDNLIVPYYQPLIDLKSGELRGFEALARWKTGPNHYVPPSDFIEL
AETAGLIVELSDSLFRQACLDALQWPDTVRLAFNISPTQFIDRQLSLRIMSILMETGF
PPSRLEIEITETALVHDIELATQILADLRQSGIRIALDDFGTGYSSLSQLSKFTFDKI
KIDRSFVMSYDVDKKQEDIMRAILGLGQGLGIATTAEGIEDENQLAFLKSIGCDFGQG
FLFSKALPAEEALSLTTRDATIKPDSATVAR"
misc_feature complement(272699..273163)
/locus_tag="Avi_0317"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(272930..272932,273056..273058))
/locus_tag="Avi_0317"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(272927..272938,272942..272944,
273005..273007,273017..273019,273029..273034,
273041..273043))
/locus_tag="Avi_0317"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(272870..272872,272951..272953))
/locus_tag="Avi_0317"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature complement(271937..272647)
/locus_tag="Avi_0317"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene complement(273751..276177)
/locus_tag="Avi_0319"
/db_xref="GeneID:7387773"
CDS complement(273751..276177)
/locus_tag="Avi_0319"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548214.1"
/db_xref="GI:222147257"
/db_xref="GeneID:7387773"
/translation="MLHSPIPTKADPMIFEAAADRAARAIPPVWPLMSSVAVNPFLGQ
AGETLAKAGARLARVAGIAITMPRHWYQQKIDTGEISDADLLAALACAPADLRPIDLA
ALKAAAALNPPRPQALASVADLAARASGVDWPGLLTERLGAWMAGYFDEGQALWAAPR
GKSAYGAWRAVATHDLTPEIAGLRGFARHVSEAPETAMAVIARVCTRLDLPVEALETY
FHQMLMSLGGWGQYARYKLWQAELAGGSDQTITDLLAIRLIWEEALFLRYGDQIGEAW
AHVRVAHAAPVVATPDLMIDAILQDAAERAAQRELARILAGNAPQIHETRPLVQAAFC
IDVRSEVFRRALESLNPQIQTLGFAGFFGLAASHRRFASDVAESRFPVLLNPALKSRA
GGPYRAEDAEPQRIKARAKRAWGRFKLAAVSSFAFVEATGPIYVGKLLSDALGLPHAS
APNDPAPQLDPALDLASRVKAAGAVLRAMSLTTGFARLVLLAGHGANTVNNPHASGLH
CGACGGYSGEVNARLLAALLNDPDVRAGLTETGMAIPQDTLFLAALHDTTTDRVTLYA
DDHPCQTHEADIAQARTWLADAGRLARGERALRLPRAADETSISKRSRDWSETRPEWA
LAGCKAFIAAPRSRTATKNLEGRAFLHDYDWTQDKSFSTLELILTAPVIVASWISLQY
YGSTVAPEAFGGGNKLLHNVTGGIGVVEGNGGLLRAGLPWQSVHDGQNYMHEPLRLSV
CLEAPVAAISEVLGRHDGVRALFDNGWLHLFTLNEEGSIAWRYNGGLQWVPIDDTEDA
EQRSKLKVAV"
misc_feature complement(273874..276102)
/locus_tag="Avi_0319"
/note="Uncharacterized protein conserved in bacteria
(DUF2309); Region: DUF2309; pfam10070"
/db_xref="CDD:192454"
gene complement(276197..277768)
/locus_tag="Avi_0320"
/db_xref="GeneID:7387774"
CDS complement(276197..277768)
/locus_tag="Avi_0320"
/codon_start=1
/transl_table=11
/product="NADH Dehydrogenase Protein"
/protein_id="YP_002548215.1"
/db_xref="GI:222147258"
/db_xref="GeneID:7387774"
/translation="MSIQFLPLLAPLALLASAVISFAQKQQRPRYSPRLAQAAALLAL
AVALAAVIALILLGPGSSPLIGFATVGLSVRLDAVSATMLVLVTFIGWVVTRYAATYL
DGEDRQGAFTGWLCLTLAAVLLLVTAGNLLQLVLAWIATSLFLHKLLLFYTGRVAAQR
AARKKFITARLGDAALAAAAALLAMAYGTADIGEILNAARAGYDAGQSGGLIVAAASL
LALAAALKSAQFPTHGWLTEVMETPTPVSALLHAGVINAGGFLLIRFADVMLLAPGVL
AALVILGGFTALFGSLVMLTQPAVKTSLAWSTVAQMGFMIFECGLGLFAVALLHIVAH
SLYKAHSFLASGGAVERVAAIPRPGPVAIPNAGAVGRAFLSALAIYCVVGLCFGLAHK
SPQAIALGAILIFGVAYMLAQGFADAAPKALTRRTALYAITTSVGYFALQMAATLMTS
GVLPATPAPQPLEWALIALAVVSFGLVAVVQAMFPLWAYHPAAAGLRVHLSNGFYVNA
IFDRLVGGWSIRSLS"
misc_feature complement(<277454..>277561)
/locus_tag="Avi_0320"
/note="NADH-Ubiquinone oxidoreductase (complex I), chain 5
N-terminus; Region: Oxidored_q1_N; pfam00662"
/db_xref="CDD:109709"
misc_feature complement(276227..277549)
/locus_tag="Avi_0320"
/note="NADH dehydrogenase subunit L; Provisional; Region:
PRK08168"
/db_xref="CDD:181264"
misc_feature complement(276716..277360)
/locus_tag="Avi_0320"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 277878..278762
/gene="oxyR"
/locus_tag="Avi_0321"
/db_xref="GeneID:7387775"
CDS 277878..278762
/gene="oxyR"
/locus_tag="Avi_0321"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002548216.1"
/db_xref="GI:222147259"
/db_xref="GeneID:7387775"
/translation="MRDLNFNHLRYFWAVAHEGSLTRAAQHMNLSQSALSVQIQKLEH
QMGHALFERVGKKLVLTEAGQIALDYADTVFKAGDELMSTLSGRPTASRQVLRVGALT
TLSRNFQLEFLRPLVGRSDVELIVRSGNMRDLLAQLEAHAVDVVLANSAAPRDARSLL
RNHLLNEQPVSLVGRPRPDGQSFKFPDDLRTEPLLLPSLDSDIRVAFDRILEMAGIRP
IILAEVDDMAMLRLLAREREGLTLVPPIVVRDELEAGVLIEHCRIPEVIESFYAIIQK
RRFPNTMLAELLASGRVL"
misc_feature 277887..278741
/gene="oxyR"
/locus_tag="Avi_0321"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 277893..278072
/gene="oxyR"
/locus_tag="Avi_0321"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 278163..278711
/gene="oxyR"
/locus_tag="Avi_0321"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature order(278205..278210,278214..278219,278223..278225,
278235..278237,278241..278261,278538..278555,
278571..278576,278580..278585)
/gene="oxyR"
/locus_tag="Avi_0321"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene complement(278802..279959)
/locus_tag="Avi_0323"
/db_xref="GeneID:7387776"
CDS complement(278802..279959)
/locus_tag="Avi_0323"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548217.1"
/db_xref="GI:222147260"
/db_xref="GeneID:7387776"
/translation="MLKHLRLEKLKDSKMSDLNKDFPLLSQKARRRAVLGGGLALGAF
SLTATSGLGAPIATGTARSTSGTPLFVDTVKDLASHPLTVLESWYVNAAFESRGKIVG
FEWHQSVTPQGSMTEFLLMNGSDGIWRPQVAAEPASDKVGAATTECHVYSSLGTLKGD
RSQFQLKLGSGQNSVDVVLTPQREELYNGTTGLLRFLGSDSYEFAFPNMRAKGSMTID
GDVFPVDAKSVWFDRQWAKSEAADPQEQAKKAEQINQSHWTWLGLTFGASDKCAISFW
DVMEPNQRSTFLTYLREDGVQMNVDAQVEYDRIWTSSDTGQRYPAVAHITAPAINLDI
VLTAMLERPEFVYQPGQGHSGCQSLCLVKGKIGANIVNKPAILELIGGIDL"
misc_feature complement(278922..>279485)
/locus_tag="Avi_0323"
/note="Hydroxyneurosporene synthase (CrtC); Region: CrtC;
cl12101"
/db_xref="CDD:159761"
gene 280369..281022
/locus_tag="Avi_0326"
/db_xref="GeneID:7387777"
CDS 280369..281022
/locus_tag="Avi_0326"
/codon_start=1
/transl_table=11
/product="Transcriptional regulator protein"
/protein_id="YP_002548218.1"
/db_xref="GI:222147261"
/db_xref="GeneID:7387777"
/translation="MSIVLNSDDSNSPQQGRPRDKNLDDALIRVTLELLSQTGLEGVT
MAKVGRLSGIPATSIYRRYPDAKSLIVAAIEDDLAKLQLHLEDHGSLRADLLAFLKTL
AEALNPERARMLAGLLLPMHHDPELAALLSRKLEAIRNEGWRGVIDRAVQRGALRAQA
LDAVPLDDVAQTMIFYQAVVKRMPADEAFLNRLLDTVLMPALQRLGSGEPEANVDDA"
misc_feature 280408..280995
/locus_tag="Avi_0326"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 280447..280587
/locus_tag="Avi_0326"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(281180..282742)
/gene="guaA"
/locus_tag="Avi_0327"
/db_xref="GeneID:7387778"
CDS complement(281180..282742)
/gene="guaA"
/locus_tag="Avi_0327"
/note="contains glutamine-hydrolyzing domain and glutamine
amidotransferase; GMP-binding domain; functions to produce
GMP from XMP in the IMP pathway"
/codon_start=1
/transl_table=11
/product="GMP synthase"
/protein_id="YP_002548219.1"
/db_xref="GI:222147262"
/db_xref="GeneID:7387778"
/translation="MTQTAHPDSVLIIDFGSQVTQLIARRVRETGVYCEIVPFQSSEE
GFARLKPKAVILSGSPASALDEGSPRVPQVIFDSGLPIFGICYGQQTICAQLGGKVEA
GHHREFGRAFLEIEQDCKLFEGLWSVGSRHQVWMSHGDRVTAIPPGFRVLATSSNAPF
AFIADEARKYYAVQFHPEVVHTPDGAKLIQNFVHNIAGITGDWSMSAYRAKAVEQIRA
QVGDKRVICALSGGVDSSVAALLIHEAVGDQLTCILVDHGLMRKNEAADVVAMFKEHY
NLHLIHVDAIDRFVGELEGVSDPETKRKIIGRLFIETFEEEAKKLGGADFLGQGTLYP
DVIESVSFSGGPSVTIKSHHNVGGLPDRMNMKLVEPLRELFKDEVRVLGKELGLPDSF
IGRHPFPGPGLAIRCPGGVTREKLDILREADAIYLDEIRKAGLYDAIWQAFAVLLPVQ
TVGVMGDGRTYEFVCALRAVTSVDGMTADFYHYDMEFLGRAATRIINEVRGINRVVYD
VTSKPPGTIEWE"
misc_feature complement(281183..282727)
/gene="guaA"
/locus_tag="Avi_0327"
/note="GMP synthase; Reviewed; Region: guaA; PRK00074"
/db_xref="CDD:178842"
misc_feature complement(282164..282715)
/gene="guaA"
/locus_tag="Avi_0327"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in GMP synthetase; Region: GATase1_GMP_Synthase;
cd01742"
/db_xref="CDD:153213"
misc_feature complement(order(282215..282217,282332..282334,
282482..282487,282563..282571,282689..282694))
/gene="guaA"
/locus_tag="Avi_0327"
/note="AMP/PPi binding site [chemical binding]; other
site"
/db_xref="CDD:153213"
misc_feature complement(order(282482..282484,282566..282568))
/gene="guaA"
/locus_tag="Avi_0327"
/note="candidate oxyanion hole; other site"
/db_xref="CDD:153213"
misc_feature complement(order(282209..282211,282215..282217,
282485..282487))
/gene="guaA"
/locus_tag="Avi_0327"
/note="catalytic triad [active]"
/db_xref="CDD:153213"
misc_feature complement(order(282221..282223,282329..282331,
282473..282475))
/gene="guaA"
/locus_tag="Avi_0327"
/note="potential glutamine specificity residues [chemical
binding]; other site"
/db_xref="CDD:153213"
misc_feature complement(281186..282073)
/gene="guaA"
/locus_tag="Avi_0327"
/note="The C-terminal domain of GMP synthetase. It
contains two subdomains; the ATP pyrophosphatase domain
which closes to the N-termial and the dimerization domain
at C-terminal end. The ATP-PPase is a twisted,
five-stranded parallel beta-sheet sandwiched...; Region:
GMP_synthase_C; cd01997"
/db_xref="CDD:30184"
misc_feature complement(order(281516..281560,281576..281650,
281663..281692,281720..281767,281783..281896,
281927..281959,281963..281995,281999..282073))
/gene="guaA"
/locus_tag="Avi_0327"
/note="ATP Binding subdomain [chemical binding]; other
site"
/db_xref="CDD:30184"
misc_feature complement(order(281615..281617,281978..281980,
281984..281986,282038..282049,282053..282061))
/gene="guaA"
/locus_tag="Avi_0327"
/note="Ligand Binding sites [chemical binding]; other
site"
/db_xref="CDD:30184"
misc_feature complement(order(281186..281254,281258..281284,
281303..281350,281360..281392,281399..281428,
281453..281491))
/gene="guaA"
/locus_tag="Avi_0327"
/note="Dimerization subdomain; other site"
/db_xref="CDD:30184"
gene complement(282827..283465)
/gene="pfs"
/locus_tag="Avi_0328"
/db_xref="GeneID:7387779"
CDS complement(282827..283465)
/gene="pfs"
/locus_tag="Avi_0328"
/note="Enables the cleavage of the glycosidic bond in both
5'-methylthioadenosine and S-adenosylhomocysteine"
/codon_start=1
/transl_table=11
/product="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase"
/protein_id="YP_002548220.1"
/db_xref="GI:222147263"
/db_xref="GeneID:7387779"
/translation="MTFELKSVCSKSILFVMAVDAEYGPLLRLRIQPLMTGVGPVESA
IATTNALRDLQAAGTLPDLVVSLGSAGSARLEQTEVYQVSSVAYRDMDASPLGFEKGC
TPFLDLPATVDLPLRIPGVAVASLSTGGNIVSGPVYDSIAADMVDMETYAVLRACQAF
NLPLIGLRGISDGKAELKHVGDWTEYLHVVDRNLAQAVDALVKAVEDGTFWF"
misc_feature complement(282830..283465)
/gene="pfs"
/locus_tag="Avi_0328"
/note="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase; Validated; Region: PRK06026"
/db_xref="CDD:180353"
misc_feature complement(282842..283465)
/gene="pfs"
/locus_tag="Avi_0328"
/note="5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase, putative; Region: MTA/SAH-nuc-hyp;
TIGR01705"
/db_xref="CDD:130766"
gene complement(283462..283899)
/locus_tag="Avi_0329"
/db_xref="GeneID:7387780"
CDS complement(283462..283899)
/locus_tag="Avi_0329"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548221.1"
/db_xref="GI:222147264"
/db_xref="GeneID:7387780"
/translation="MDADIQQRITASFARQGAMHTIGAELTRISHKMVEIELAFHDKL
TQQHGFLHAGVISAALDAACSYAAYTVIAPETSLLTIEFKVNMMSPGRGDRFLFRGEI
TKPGSTIIVADGRGYAISDGPAKLIASMTSTLMVMRGREDIRE"
misc_feature complement(283492..283839)
/locus_tag="Avi_0329"
/note="PaaI_thioesterase is a tetrameric acyl-CoA
thioesterase with a hot dog fold and one of several
proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI exist
in archaea and eukaryotes, their function has not...;
Region: PaaI_thioesterase; cd03443"
/db_xref="CDD:48038"
misc_feature complement(order(283630..283641,283660..283662,
283747..283749))
/locus_tag="Avi_0329"
/note="CoenzymeA binding site [chemical binding]; other
site"
/db_xref="CDD:48038"
misc_feature complement(order(283639..283641,283645..283659,
283729..283731,283738..283740,283744..283746))
/locus_tag="Avi_0329"
/note="subunit interaction site [polypeptide binding];
other site"
/db_xref="CDD:48038"
misc_feature complement(order(283660..283662,283702..283707,
283714..283719,283741..283743))
/locus_tag="Avi_0329"
/note="PHB binding site; other site"
/db_xref="CDD:48038"
gene complement(284023..284487)
/gene="tspO"
/locus_tag="Avi_0330"
/db_xref="GeneID:7387781"
CDS complement(284023..284487)
/gene="tspO"
/locus_tag="Avi_0330"
/codon_start=1
/transl_table=11
/product="tryptophan-rich sensory protein"
/protein_id="YP_002548222.1"
/db_xref="GI:222147265"
/db_xref="GeneID:7387781"
/translation="MRNALTNLIFMAAVTGIGTMIGLTNLPGDWYDGLEKPFFNPPGW
IFGPVWTVLYVLIGLAGARIWQRTRQSRGASRAMALWFGQMLLNFLWSPAFFGAQSTG
LALIVILPMLALILAFVWQVRRLDRVAMLSFIPYAVWVAFATVLNAALFLLN"
misc_feature complement(284029..284466)
/gene="tspO"
/locus_tag="Avi_0330"
/note="TspO/MBR family; Region: TspO_MBR; pfam03073"
/db_xref="CDD:202527"
gene complement(284536..285609)
/locus_tag="Avi_0332"
/db_xref="GeneID:7387782"
CDS complement(284536..285609)
/locus_tag="Avi_0332"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548223.1"
/db_xref="GI:222147266"
/db_xref="GeneID:7387782"
/translation="MRGALMDRRHFLKAAGAVYLAGLTAAQAATLTATDAVYASAFRA
QDGSFDAALLSEDGRIVARVALPGRAHGLAASASKVAAFARRPGTFVFIFDRQQQVAP
VVVNAPAGRHFYGHGHFSPDGKLLYASENDFDNNRGMIGLYDATDRFRRIGEFSAHGI
GTHDMSVSDDGSLLIIANGGIETNPDFGRTKLNLDHMQPSLVLADAKTGALIEKHALP
EALRQLSTRHIDLDARGRIWFACQYEGPRRDLPPLVGHFRRGEALHWLDLPPDITRGL
ANYVGAIAVNRREGLVGVTSPNGGLSVTLDTDSGKVLKTASLSEAAGIAPAAHGFATS
SYDGRFLDRSEAVNWDQHIIRIG"
misc_feature complement(284539..285609)
/locus_tag="Avi_0332"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3490"
/db_xref="CDD:33293"
gene complement(285615..286739)
/locus_tag="Avi_0333"
/db_xref="GeneID:7387783"
CDS complement(285615..286739)
/locus_tag="Avi_0333"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548224.1"
/db_xref="GI:222147267"
/db_xref="GeneID:7387783"
/translation="MPNARCRILTLALALSLFPLQALPVLAQDATPHATALQTAAVPD
VMAKTVDGFIRPGYRNFLDKAKALHSGMNALCASPSEQTVKAAKNGFEQALRAWARIE
IVRVGPVIEENRFEHILFYPDRKGLALKQIQGAIASNDDSFTKPEALHEKSVAIQGLG
ALEYVLYGTGSDILNQADGAFRCRYGAAIAGNIENMAGELSSLWEAPGGIQTAWKQPG
PDNDVFRTPSEAVTGLLGILVHGTETVRDERIETFFKGAGGRIAPKQAIFWRSGLTFV
SMQENLTGLKQLLNDTGTASLLPEGKRGVIPAINTLADRLIQTTQSMTPDVEAAVGQP
DNRKKLVSLLDDSRSMITDLSDGLGGGVGLSAGFSFADGD"
misc_feature complement(285618..286613)
/locus_tag="Avi_0333"
/note="Imelysin; Region: Peptidase_M75; cl09159"
/db_xref="CDD:208993"
gene complement(286739..288325)
/locus_tag="Avi_0334"
/db_xref="GeneID:7387784"
CDS complement(286739..288325)
/locus_tag="Avi_0334"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548225.1"
/db_xref="GI:222147268"
/db_xref="GeneID:7387784"
/translation="MAAAHKRAAAIITGMPNVRLTTATILLLGGALLMGSQLKSSLIA
GAFAAELRPDLTPADRIKVNAVTVPTNDFSKAEAFEAMTAGAASSTGPADAKAFTHPL
ATLSFEQQQQFSLGEALFQKFWVSAPSSTQASDGLGPLFNARSCESCHQRGGRGHPPG
PDGDATSMFLRLARPAHTDKEKAAIAALKALNFGDDTYGRQLQDRAVPGLAAEGRLSV
TYQPKTVTLAGGETETLRVPTYTIDALGYGPMGADTTLSPRIANPMIGMGLIEAIADE
DILANAERQAQAGDGISGTVAKVRDHLTGDIRIGRFGWKAENATVRDQAASALAGDIG
ISSPDDPRHAGDCTANQPQCLAMPNGVQARLGSVEAPPPVLDLMTFYSETLAPPKRRD
VTKPEVLAGKALFYASGCASCHQPKYVTRRNAAYPALSFQLIWPYSDFLLHDMGPDLA
DGQQVGLASGQQWRTPPLWGLGLTAKVGGRQAYLHDGRATSLPQAILWHGGEAENARN
AFASMTPGDRKALITFLESL"
misc_feature complement(286742..288181)
/locus_tag="Avi_0334"
/note="Predicted thiol oxidoreductase [Energy production
and conversion]; Region: COG3488"
/db_xref="CDD:33291"
gene complement(288343..289620)
/locus_tag="Avi_0335"
/db_xref="GeneID:7387785"
CDS complement(288343..289620)
/locus_tag="Avi_0335"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548226.1"
/db_xref="GI:222147269"
/db_xref="GeneID:7387785"
/translation="MSRSLMIGAGLALFIASTSFAAPAAKAPEADAVLKHYAELAEAK
YQDSLTTAKTLDAAVDALLAKPSKSTLNKARSAWIKARVPYQQSEVYRFGNKIVDDWE
GKVNAWPLDEGLIDYVDKSYGTESDTNALYTANVIANTKIKINGEEVDATNLTPDFLA
NKLQEAGGVEANVATGYHAIEFLLWGQDLNGTGPGAGNRPFTDYDLKNCTGGHCDRRA
QYLKSASTLLVSDLQEMVDAWKPEGEATKTLLADPTSGLKAILTGMGSLSYGELAGER
MKLGLLLHDPEEEHDCFSDNTHNSHYYDALGIRSAYTGKYTRIDGTKMTGPSLSDLVA
AKDKALDKEMKSKLNTTMKAMTALVKRAKSVEHYDQMIAENNKDGNATVQAGIDGLID
QTKSIQRVVAALDLGEVKLEGSDSLDNPSAVFK"
misc_feature complement(288346..289524)
/locus_tag="Avi_0335"
/note="Uncharacterized iron-regulated protein [Inorganic
ion transport and metabolism]; Region: IrpA; COG3487"
/db_xref="CDD:33290"
gene complement(289738..291024)
/gene="sun"
/locus_tag="Avi_0336"
/db_xref="GeneID:7387786"
CDS complement(289738..291024)
/gene="sun"
/locus_tag="Avi_0336"
/codon_start=1
/transl_table=11
/product="Sun protein"
/protein_id="YP_002548227.1"
/db_xref="GI:222147270"
/db_xref="GeneID:7387786"
/translation="MRLGGRLAGAIEVLSDIETRRRPVADALKDWGLAHRFAGSGDRA
AIGNIVYDALRMKLSHAYIMDDDSPAALGYAVLLRQWGMAPESLAADLDGDSFAPAPL
TQAQSAAFSSRTLEDAPQFVQGDIPEWVVPSFEAVFGADWLREAQALAVRPSLDLRAN
TLKANRDKVLKALSHTQARPATISPIGIRIEPGEGPSRLPNVTAELGFQKGWFEVQDE
GSQIVSALVEPGEGHQVLDFCAGGGGKTLAMAAAMGNKGQVHAYDSDRKRLAPIIERL
KRAGTHNIQVHDRVAALQSLTGRFDKVLVDAPCTGTGTWRRRPDTKWRLTDRNLQERI
EQQQQALTEAATYVRSGGELIYVTCSVLPEENDRQIEAFTAAHPQFSPMPMLERWTGL
FGGSVAKPISAHGKSLTLSPAATDTDGFFFCRMVKA"
misc_feature complement(289744..290769)
/gene="sun"
/locus_tag="Avi_0336"
/note="tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis]; Region: Sun; COG0144"
/db_xref="CDD:30493"
misc_feature complement(<290098..290322)
/gene="sun"
/locus_tag="Avi_0336"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(290107..290109,290155..290163,
290233..290238,290293..290313))
/gene="sun"
/locus_tag="Avi_0336"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(291334..291768)
/locus_tag="Avi_0337"
/db_xref="GeneID:7387787"
CDS complement(291334..291768)
/locus_tag="Avi_0337"
/codon_start=1
/transl_table=11
/product="rare lipoprotein A"
/protein_id="YP_002548228.1"
/db_xref="GI:222147271"
/db_xref="GeneID:7387787"
/translation="MPFLTTFKPPYANFISEIAKGNENLVPLSRSVLIAAAITSLVAF
SPLQAFAANGCGGASWYALYSRTASGERMNPTTFTAAHKSLPFGSKVKVTNRNNGKTV
VVRINDRGPFIKGRVLDLSKAAAADIGMVGSGTAKVCYELIG"
misc_feature complement(<291337..>291618)
/locus_tag="Avi_0337"
/note="Lipoproteins [Cell envelope biogenesis, outer
membrane]; Region: RlpA; COG0797"
/db_xref="CDD:31140"
misc_feature complement(291349..291606)
/locus_tag="Avi_0337"
/note="Rare lipoprotein A (RlpA)-like double-psi
beta-barrel; Region: DPBB_1; pfam03330"
/db_xref="CDD:202595"
gene complement(292043..292939)
/locus_tag="Avi_0339"
/db_xref="GeneID:7387788"
CDS complement(292043..292939)
/locus_tag="Avi_0339"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548229.1"
/db_xref="GI:222147272"
/db_xref="GeneID:7387788"
/translation="MDSSRSDPMRLMIFGAGYSGKAIGQHFIQQGIPVSGTTRSPAKA
KALSDLGIEPLVFDGQRLSDEIIQAMACATHVVQSIAPGSDGDPLLRLTQGALKTWMP
KVQWLAYLSTVGVYGDHQGAWVDEDTVCKPVSVRSKERVEAEQAWGRAALAAGVPLST
LRLSGIYGPGRNGLVNMAEGTARRLVKKDQVFNRIRVEDIAAATWFLAGRNEQGIFNI
TDHEPAPPQDVVAEAARLMEVEPPPEQAFETAELSPMARSFYGENKRVMNAKVRALGF
AFAYPDYRVSLSQLWSSGRWRG"
misc_feature complement(292097..292915)
/locus_tag="Avi_0339"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:30800"
misc_feature complement(292115..292909)
/locus_tag="Avi_0339"
/note="atypical (a) SDRs, subgroup 4; Region: SDR_a4;
cd05266"
/db_xref="CDD:187576"
misc_feature complement(order(292442..292453,292520..292522,
292532..292534,292604..292612,292697..292705,
292820..292828,292883..292891,292895..292897))
/locus_tag="Avi_0339"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187576"
gene complement(292912..294084)
/locus_tag="Avi_0340"
/db_xref="GeneID:7387789"
CDS complement(292912..294084)
/locus_tag="Avi_0340"
/codon_start=1
/transl_table=11
/product="iron-sulfur cluster binding protein"
/protein_id="YP_002548230.1"
/db_xref="GI:222147273"
/db_xref="GeneID:7387789"
/translation="MAKEGSPERTAEKAKARAAKLSAFIRQEAADKGFDLCRITGPQS
IPQAPARLMEFVDAGYHGTMAWMEETRERRGDPKVLWPQVRSIVMFGLNYGPETDPRA
LQAQPNKAAISVYARNRDYHDIIKGKLKEIATRFAARAGEDVKVFVDTAPVMEKPLAA
AAGLGWQGKHTNLVSRDYGSWLFLGSLFTTAELELDAAERDHCGSCRACLDACPTAAF
PAPYQIDARRCISYLTIEHKGVIDRDLRPAFGNRIYGCDDCLAACPWNKFAAQTREIK
LQAREDLMAPDIAFFLTLDDPGFRSHFSGSPVKRIGRDRFVRNVLIAAGNSGLSTLIT
PCLDLLADASPDVRGMAVWALSRLMEPQAFGALAHYRENEPDSDVRAEWIAAGVTP"
misc_feature complement(293014..294015)
/locus_tag="Avi_0340"
/note="Uncharacterized Fe-S protein [Energy production and
conversion]; Region: COG1600"
/db_xref="CDD:31788"
misc_feature complement(293635..293865)
/locus_tag="Avi_0340"
/note="Domain of unknown function (DUF1730); Region:
DUF1730; pfam08331"
/db_xref="CDD:149403"
gene complement(294096..294788)
/locus_tag="Avi_0341"
/db_xref="GeneID:7387790"
CDS complement(294096..294788)
/locus_tag="Avi_0341"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase"
/protein_id="YP_002548231.1"
/db_xref="GI:222147274"
/db_xref="GeneID:7387790"
/translation="MPTLYHHPMSTTSRFVRLILSEYGFQADLVEEQTWEKRREFLTL
NPAGTLPVYVDDNMRTLCGCTVISEFLDETHGVLKRDRRLLAEDPFQRAEIRRLVDWF
LQKMEQDVTRPLARERVFKLQIPNGLGGGAPDSKVLRTARGNIRQHMKYLSWLAGSRT
WLAGDRLSYGDLAAGAAISVLDYLGEIDWAESPIAKDWYQRLKSRPSFRPLLAERVRG
LTPVSHYADLDF"
misc_feature complement(294156..294785)
/locus_tag="Avi_0341"
/note="Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones]; Region: Gst;
COG0625"
/db_xref="CDD:30970"
misc_feature complement(294573..294785)
/locus_tag="Avi_0341"
/note="Glutathione S-transferase (GST) family, N-terminal
domain; a large, diverse group of cytosolic dimeric
proteins involved in cellular detoxification by catalyzing
the conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic...; Region: GST_N_family;
cd00570"
/db_xref="CDD:48493"
misc_feature complement(order(294582..294587,294594..294596,
294723..294728,294735..294740,294744..294749,
294753..294755))
/locus_tag="Avi_0341"
/note="C-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:48493"
misc_feature complement(order(294597..294602,294636..294644,
294753..294755))
/locus_tag="Avi_0341"
/note="GSH binding site (G-site) [chemical binding]; other
site"
/db_xref="CDD:48493"
misc_feature complement(order(294582..294584,294591..294596,
294600..294605,294642..294644))
/locus_tag="Avi_0341"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48493"
misc_feature complement(294183..294506)
/locus_tag="Avi_0341"
/note="C-terminal, alpha helical domain of the Glutathione
S-transferase family; Region: GST_C_family; cd00299"
/db_xref="CDD:198286"
misc_feature complement(order(294249..294251,294261..294263,
294270..294275,294282..294284,294480..294482,
294501..294503))
/locus_tag="Avi_0341"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198286"
misc_feature complement(order(294336..294338,294477..294479,
294486..294491,294498..294503))
/locus_tag="Avi_0341"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198286"
misc_feature complement(order(294249..294251,294258..294260,
294465..294470,294480..294482))
/locus_tag="Avi_0341"
/note="substrate binding pocket (H-site) [chemical
binding]; other site"
/db_xref="CDD:198286"
gene 294962..295768
/gene="bacA"
/locus_tag="Avi_0342"
/db_xref="GeneID:7387791"
CDS 294962..295768
/gene="bacA"
/locus_tag="Avi_0342"
/note="BacA; phosphatase activity in Escherichia coli not
kinase; involved in bacitracin resistance as bacitracin
supposedly sequesters undecaprenyl disphosphate which
reduces the pool of lipid carrier available to the cell"
/codon_start=1
/transl_table=11
/product="UDP pyrophosphate phosphatase"
/protein_id="YP_002548232.1"
/db_xref="GI:222147275"
/db_xref="GeneID:7387791"
/translation="MEDQSIVSALLLGLIEGLTEFIPVSSTAHVLLAGHFLGFKSPGN
TFAVLIQLGAILAILAVYIQKLLGIALSLPSNPKSRHFVLAVLVAFLPAAIIGALAHD
FIKAVLFETPMLICVMLILGGVILLWVDRMTFKPRYTDVMDYPLSLALKIGLFQCLAM
IPGTSRSGATIVGSLLMGTDKRSAAEFSFFLAMPTMLGAFVLDLYKNRNALSMDDGLL
IGVGFLAAFISALFVVRGLLDFVSRRGYAPFAWWRIAVGVVGLIGLLVWG"
misc_feature 294974..295726
/gene="bacA"
/locus_tag="Avi_0342"
/note="undecaprenyl pyrophosphate phosphatase; Reviewed;
Region: PRK00281"
/db_xref="CDD:178958"
gene complement(296504..297481)
/locus_tag="Avi_0343"
/db_xref="GeneID:7387792"
CDS complement(296504..297481)
/locus_tag="Avi_0343"
/codon_start=1
/transl_table=11
/product="NADH-ubiquinone oxidoreductase"
/protein_id="YP_002548233.1"
/db_xref="GI:222147276"
/db_xref="GeneID:7387792"
/translation="MTFANLPPLVTVFGGSGFVGRHVVRVLAQRGYRVRVAVRRPDLA
GFVLPFGNVGQISLSQANLRYRDSVAKAVEGASVVVNCVGILLESGRNKFDAVQDFGA
RAVAEAATAAGARLVHISAIGADAKSASSYAASKGRGEDAIRQVAPGAVILRPSIVFG
PEDSFFNKFAAMARLSPVLPLIGGGKTKFQPVFVEDVAEAVAKAVDGKVAAGLFELGG
PEVLTFRQCLEEMLRVIDRTNPLVSLPFGIASLLASVASAIPLITPPLTNDQLTLLKS
DNVVSEAAKKEGRTLTALGITPTAVAAVLPSYLIHFRPHGQYSRSGKAA"
misc_feature complement(296747..297460)
/locus_tag="Avi_0343"
/note="Predicted nucleoside-diphosphate-sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: COG0702"
/db_xref="CDD:31046"
misc_feature complement(296648..297454)
/locus_tag="Avi_0343"
/note="NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs;
Region: NDUFA9_like_SDR_a; cd05271"
/db_xref="CDD:187579"
misc_feature complement(order(297008..297019,297074..297076,
297086..297088,297119..297127,297191..297193,
297230..297238,297362..297370,297425..297436,
297440..297442))
/locus_tag="Avi_0343"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187579"
misc_feature complement(order(297074..297076,297086..297088))
/locus_tag="Avi_0343"
/note="active site"
/db_xref="CDD:187579"
gene complement(297616..297906)
/locus_tag="Avi_0345"
/db_xref="GeneID:7387793"
CDS complement(297616..297906)
/locus_tag="Avi_0345"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548234.1"
/db_xref="GI:222147277"
/db_xref="GeneID:7387793"
/translation="MAKGYWIARVDVRDAERYKDYVSTAKPAFERFGAVFLARGGKTD
AVEGQSRARNVVIEFPSFQAAYDCYHSPEYQAAVKIRQEVADGEIVLVEGNL"
misc_feature complement(297625..297906)
/locus_tag="Avi_0345"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5470"
/db_xref="CDD:35029"
gene 298159..299310
/locus_tag="Avi_0346"
/db_xref="GeneID:7387794"
CDS 298159..299310
/locus_tag="Avi_0346"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548235.1"
/db_xref="GI:222147278"
/db_xref="GeneID:7387794"
/translation="MSREINRLPKLTPVLLFFLLSVPLLPVPFTTVSLMEGSAFAASA
PAASHGALAKPCAPSVYDALRDTPLEAESVLRLACKVELSHDDLVMQNLELLGADASG
VSIDCHGGVIGLPGSVPKGAPPTIRIASLRKDDGSWSVPHDIVIRNCKIYGSIHIMGL
GANGEAELVRQSSLNRNHTEYAQSVAPSGIVLDTLSIVADGPIPLYVAPGVTHVTLSH
STIQGQTKGSAIYLDAETAHNTISGNSFELATRSREMIAVDGSAHNVIEANSFANAQH
GGIFLYRNCGEGGTIRHQTPQHNRIADNKFTYQDVFRPRPAIWLNAREAWRNLYCYQD
PPAPFGSGADNHSFADFNTVSGNQIIGGDADLIRDNGQNNVLSGNGIKP"
gene complement(299330..300025)
/gene="pyrF"
/locus_tag="Avi_0347"
/db_xref="GeneID:7387795"
CDS complement(299330..300025)
/gene="pyrF"
/locus_tag="Avi_0347"
/note="type 1 subfamily; involved in last step of
pyrimidine biosynthesis; converts orotidine 5'-phosphate
to UMP and carbon dioxide; OMP decarboxylase; OMPDCase;
OMPdecase"
/codon_start=1
/transl_table=11
/product="orotidine 5'-phosphate decarboxylase"
/protein_id="YP_002548236.1"
/db_xref="GI:222147279"
/db_xref="GeneID:7387795"
/translation="MDARNRLIVGLDVATVTEAEKLVSTLAEDVTFYKIGYQLAFAGG
LEFARDLAQSGKKVFLDMKLLDIDNTVASAVENIVRMGMTMLTLHAYPKAMQAAVEAA
QGSGLCLLGVTVLTSMDDQDLNDAGYQGDARSLVLKRAAQAKEKGMGGIVCSAQEAQA
VRAILGSDMAIVTPGIRPAGSDAGDQKRVMTPADAIHAGSSHLVVGRPIVKADDPRAA
TQVILAEMQAAFT"
misc_feature complement(299360..300007)
/gene="pyrF"
/locus_tag="Avi_0347"
/note="Orotidine 5'-phosphate decarboxylase (ODCase) is a
dimeric enzyme that decarboxylates orotidine
5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP),
an essential step in the pyrimidine biosynthetic pathway.
In mammals, UMP synthase contains two...; Region:
OMP_decarboxylase_like; cd04725"
/db_xref="CDD:73387"
misc_feature complement(order(299405..299410,299504..299506,
299678..299683,299837..299839,299843..299845,
299918..299920,299924..299926,299990..299992,
299996..299998))
/gene="pyrF"
/locus_tag="Avi_0347"
/note="active site"
/db_xref="CDD:73387"
misc_feature complement(order(299405..299407,299621..299623,
299681..299683,299726..299728,299753..299761,
299804..299809,299816..299821,299828..299833,
299837..299842,299909..299914,299918..299920))
/gene="pyrF"
/locus_tag="Avi_0347"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73387"
gene complement(300025..300612)
/locus_tag="Avi_0348"
/db_xref="GeneID:7387796"
CDS complement(300025..300612)
/locus_tag="Avi_0348"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548237.1"
/db_xref="GI:222147280"
/db_xref="GeneID:7387796"
/translation="MFAVYITHPQVRIDPEVPVPQWGLSDLGQERTRRTATAAWVRQL
GRIVSSAETKAVETAAILAGAANIGVEQIETMHENDRSATGFLTPSEFEKAADWFFAH
PEDSFCGWERAIDAQARIVGAIQDVLGQHDPTVPIAFIGHGGVGTLLKCHLQGQPIHR
SGDQPPGGGNLFCFTLADLTVTCDWTAMEIWQGDR"
misc_feature complement(300040..300612)
/locus_tag="Avi_0348"
/note="Broad specificity phosphatase PhoE and related
phosphatases [General function prediction only]; Region:
phoE; COG0406"
/db_xref="CDD:30755"
misc_feature complement(order(300184..300189,300451..300453))
/locus_tag="Avi_0348"
/note="catalytic core [active]"
/db_xref="CDD:132716"
gene complement(300626..301219)
/locus_tag="Avi_0349"
/db_xref="GeneID:7387797"
CDS complement(300626..301219)
/locus_tag="Avi_0349"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="YP_002548238.1"
/db_xref="GI:222147281"
/db_xref="GeneID:7387797"
/translation="MKLNLKQRLEKKFDEEIRFFKGMMQGPKLVGAIVPTSTITARRM
ASIITPESGLPVLELGPGTGVITKAILARGIKPEKLVSVEYSADFHRHLTETIPGVNF
VHGDAFNLEKTLGPLSGLSFDCVISAMPLLNFPMQERIRLLEDLLDRMPHGRPFMQIS
YGPMSPIIAKGGSYFIQHFDFVVRNIPPAQLWIYRRR"
misc_feature complement(<300827..301054)
/locus_tag="Avi_0349"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(300836..300838,300899..300907,
300965..300970,301025..301045))
/locus_tag="Avi_0349"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(301462..302700)
/gene="dnaN"
/locus_tag="Avi_0351"
/db_xref="GeneID:7387798"
CDS complement(301462..302700)
/gene="dnaN"
/locus_tag="Avi_0351"
/note="binds the polymerase to DNA and acts as a sliding
clamp"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_002548239.1"
/db_xref="GI:222147282"
/db_xref="GeneID:7387798"
/translation="MHFDRLCCHFARPNKAGHRRPDQGKPIPNAGSHRSKVAASMRIT
LERSNLLKSLNHVHRVVERRNTIPILSNVLLRAEGQSLSMKATDLDLEVTEATPANIE
QAGATTVPAHLLYEIVRKLSDGAEVLLSTNPDGASMTVASGRSKFSLQCLPEQDFPDL
TTGSFSHSFKLKASDLKMLIDRTQFAISTEETRYYLNGIYLHTIEADGKLKLRAVATD
GHRLARADVEAPSGSEGMPGIIIPRKTVGELQKLVDNPDLIVALEVSDAKIRFNIGEI
VMTSKLIDGTFPDYQRVIPQANDKEMRVDCQTFARAVDRVSTISSERGRAVKLAIGDG
HLMLTVNNPDSGSATEEVAVGYESDAMEIGFNAKYLLDITAQLSGEEAIFLLADAGSP
TLIRDTAGDDALYVLMPMRV"
misc_feature complement(301465..302580)
/gene="dnaN"
/locus_tag="Avi_0351"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature complement(301468..302580)
/gene="dnaN"
/locus_tag="Avi_0351"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature complement(order(301969..301971,302344..302346,
302365..302367,302509..302511))
/gene="dnaN"
/locus_tag="Avi_0351"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature complement(order(301651..301656,301747..301749,
302263..302265,302269..302271,302353..302355,
302362..302364))
/gene="dnaN"
/locus_tag="Avi_0351"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature complement(order(301468..301479,301603..301605,
302035..302046,302050..302052))
/gene="dnaN"
/locus_tag="Avi_0351"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature complement(order(301468..301479,301594..301596,
301675..301680,301717..301719,301822..301824,
302041..302046,302050..302052))
/gene="dnaN"
/locus_tag="Avi_0351"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 302880..303800
/locus_tag="Avi_0352"
/db_xref="GeneID:7387799"
CDS 302880..303800
/locus_tag="Avi_0352"
/codon_start=1
/transl_table=11
/product="tetrapyrrole methylase"
/protein_id="YP_002548240.1"
/db_xref="GI:222147283"
/db_xref="GeneID:7387799"
/translation="MSAVAETVNTPDDGQKSFRLHDRPITARPIEPALYLVATPIGNL
SDITLRALEVLAGADVLACEDTRVTRVLLDRYGITTRPYAYHEYNAEEVGPKLIEALA
SGKSVALVSDAGTPLVSDPGYRLAKLAIEAGLRVVPLPGPSAPLAALVGSGLPNDAFL
FAGFLPTKDKARRDRLAQWAATPATLIFFESPHRIGATLAAAAEVLGAERSACVCREL
TKTFEEFRRGTLVELSDWYDDERQVKGEIVLVVGPPLPSGPPDAADVDRLLVQLAQTL
PTAGAATEAARQTGLPRKDLYQRLLELKAE"
misc_feature 302961..303791
/locus_tag="Avi_0352"
/note="Predicted methyltransferases [General function
prediction only]; Region: COG0313"
/db_xref="CDD:30661"
misc_feature 302979..303620
/locus_tag="Avi_0352"
/note="Ribosomal RNA small subunit methyltransferase I,
also known as rRNA (cytidine-2'-O-)-methyltransferase
RsmI; Region: RsmI; cd11648"
/db_xref="CDD:212507"
misc_feature order(303000..303002,303216..303224,303231..303236,
303306..303311,303444..303446,303522..303524,
303528..303533,303615..303620)
/locus_tag="Avi_0352"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212507"
misc_feature order(303018..303029,303033..303035,303222..303239,
303246..303251,303255..303260,303291..303293,
303297..303308,303312..303317,303324..303329,
303354..303368)
/locus_tag="Avi_0352"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212507"
gene 303797..304183
/locus_tag="Avi_0353"
/db_xref="GeneID:7387800"
CDS 303797..304183
/locus_tag="Avi_0353"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548241.1"
/db_xref="GI:222147284"
/db_xref="GeneID:7387800"
/translation="MRADEKKPREKSGAARKRAERRGRWSEYLAAAYLLSKGYRIVAL
RYKTRSGEIDLIVRRGDLVVLVEVKARATQQSAVDAVSFESQRRIRAAGDLWLCRQPD
ASRLSIRCDIVAVLPWRWPRHFPGAF"
misc_feature 303878..304180
/locus_tag="Avi_0353"
/note="hypothetical protein; Reviewed; Region: PRK12497"
/db_xref="CDD:183560"
gene 304331..305629
/gene="ugpA"
/locus_tag="Avi_0354"
/db_xref="GeneID:7387801"
CDS 304331..305629
/gene="ugpA"
/locus_tag="Avi_0354"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(sn-glycerol 3-phosphate)"
/protein_id="YP_002548242.1"
/db_xref="GI:222147285"
/db_xref="GeneID:7387801"
/translation="MFKKLSMAALAVTVSTTSSFAATNISWWHGMGGRNGEVINELSQ
KFNAAQGECVLTPVSKGSYEEALAAGIAAFRSHDQPNILQVFDAGSATIINAKGATIP
AEDLLLKAGYKFDRSAFIEGVRYFYADKTGKFVGMPFNSSAPILYINTEALKKAGVEA
PKTWEEFEAIAPKLKAAGYIPLVQSQLTWEFTENFFSRNNIQFASNNNGYDGLAGTTI
NVTDPNHVMMYDKLKAWKDEGYFAYYGAGWNDNQKPFEEGKVALWVGSSGSFGGLQKT
ASMPFSATFLPYWGSIKGAGVHSFIGGAALYAMSGKTEAENKCTAAFFNFLTQPEIQK
FYHQATGYVAITTAAYELAKKEGYYEKAPVAEVGIKQLQLPGGEWDKGYRLGFYPQIR
SVMEREYNKIFSGETTPKAAMETIKKEADEILARFAKTAG"
misc_feature 304403..305626
/gene="ugpA"
/locus_tag="Avi_0354"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature 304409..305611
/gene="ugpA"
/locus_tag="Avi_0354"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
gene 305705..306586
/gene="ugpA"
/locus_tag="Avi_0356"
/db_xref="GeneID:7387802"
CDS 305705..306586
/gene="ugpA"
/locus_tag="Avi_0356"
/codon_start=1
/transl_table=11
/product="sn-glycerol-3-phosphate ABC transporter
permease"
/protein_id="YP_002548243.1"
/db_xref="GI:222147286"
/db_xref="GeneID:7387802"
/translation="MKRVQFNSRFLPYVFLAPQLCIVAIFFYWPAVQAIQSSFYIEDP
FGFGSTFVGLANYVDMFSSSEYRKIALFTLCFSVVVTFLVLSIGTVLAVKADAVIRGQ
SAYKTLLIVVYAIAPPVAGLIGMMFFDQHIGPFVKFVALFGWDMKVGLNYFDTAFAMV
TIAVWNQIPYNFIFILSGLQGIPASVREAATLDCRSGTRRFWTVTMPLLTPTAFFLLV
VNMTYSLFDTFGVIDVIVKDKPADNPITLVYKVYTDGFRGNDIGSSSAQSVILMVVVL
VLTMIQFRFIERRVHYG"
misc_feature 305912..>306397
/gene="ugpA"
/locus_tag="Avi_0356"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(305960..305965,305972..305977,305990..305992,
306017..306028,306032..306061,306068..306073,
306077..306079,306197..306202,306206..306208,
306212..306214,306221..306226,306230..306232,
306242..306247,306254..306256,306305..306307,
306347..306352,306359..306361,306380..306391)
/gene="ugpA"
/locus_tag="Avi_0356"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(306035..306079,306380..306397)
/gene="ugpA"
/locus_tag="Avi_0356"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(306257..306295,306311..306316,306326..306328)
/gene="ugpA"
/locus_tag="Avi_0356"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 306597..307439
/gene="ugpE"
/locus_tag="Avi_0357"
/db_xref="GeneID:7387803"
CDS 306597..307439
/gene="ugpE"
/locus_tag="Avi_0357"
/codon_start=1
/transl_table=11
/product="sn-glycerol-3-phosphate ABC transporter
permease"
/protein_id="YP_002548244.1"
/db_xref="GI:222147287"
/db_xref="GeneID:7387803"
/translation="MYKTKLFDHVILLLGVLVMLGPLVVAFTTSSHTAAEIHQKGLML
SMGGHLGETYNKVLFAQTGFNGKVTGLSMLLNSLILGLGFAIGKIVLSMMAAYAIVYF
RFRFATLAFWIIFTTLLLPLEVRIMPSYKVASDLGLLNSYTGLILPLLASATGTFFFR
QFFKSVPEELLEAARIDGAGPFKFLIDILIPLSRTMIAAVFIIMFVYGWNQYLWPMLM
TTDESFYTLMRGIKQILQVWVGAQIPDYNEAFAMAVLAILPPVIIVVVFQSWFIKGLT
ETDK"
misc_feature <306849..307430
/gene="ugpE"
/locus_tag="Avi_0357"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 306849..307283
/gene="ugpE"
/locus_tag="Avi_0357"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(306864..306869,306876..306881,306894..306896,
306924..306935,306939..306968,306975..306980,
306984..306986,307050..307052,307056..307058,
307065..307070,307074..307076,307086..307091,
307098..307100,307149..307151,307191..307196,
307203..307205,307224..307235,307242..307247)
/gene="ugpE"
/locus_tag="Avi_0357"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(306942..306986,307224..307241)
/gene="ugpE"
/locus_tag="Avi_0357"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(306984..306986,307044..307046,307242..307244,
307278..307280)
/gene="ugpE"
/locus_tag="Avi_0357"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(307101..307139,307155..307160,307170..307172)
/gene="ugpE"
/locus_tag="Avi_0357"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 307451..308557
/gene="ugpC"
/locus_tag="Avi_0359"
/db_xref="GeneID:7387804"
CDS 307451..308557
/gene="ugpC"
/locus_tag="Avi_0359"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(sn-Glycerol-3-phosphate)"
/protein_id="YP_002548245.1"
/db_xref="GI:222147288"
/db_xref="GeneID:7387804"
/translation="MASIDINQVSKIYDGGVRAVNSVDIQINDGEFIVLVGPSGCGKS
TLLRMVAGLESISEGVVRIGDRVVNTVEPADRDIAMVFQNYALYPHMTVRQNLAYGLK
NRKTPKDEIDARVAEAARMLELQPYLDRKPKALSGGQRQRVAMGRAIVRKPAVFLFDE
PLSNLDAKLRVSMRVEIRKLQRRLGTTSIYVTHDQLEAMTLADRLVVLNGGRIEQIGT
PLEVYHAPASTFVASFIGSPAMNLVTGRLDGNRLSLWPVSFTFEGETDYRGEVTIGLR
AEDLTVAAPGQPYVPFRVDYVEELGAVRLVHGFVGDQALCASLPVSTVLSNEMRLGVD
PQKFHFFDREGRRLALPFATAQMTFGAQAETVEA"
misc_feature 307451..308491
/gene="ugpC"
/locus_tag="Avi_0359"
/note="glycerol-3-phosphate transporter ATP-binding
subunit; Provisional; Region: ugpC; PRK11650"
/db_xref="CDD:183258"
misc_feature 307460..308101
/gene="ugpC"
/locus_tag="Avi_0359"
/note="The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two...; Region:
ABC_MalK_N; cd03301"
/db_xref="CDD:73060"
misc_feature 307559..307582
/gene="ugpC"
/locus_tag="Avi_0359"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73060"
misc_feature order(307568..307573,307577..307585,307697..307699,
307925..307930,308027..308029)
/gene="ugpC"
/locus_tag="Avi_0359"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73060"
misc_feature 307688..307699
/gene="ugpC"
/locus_tag="Avi_0359"
/note="Q-loop/lid; other site"
/db_xref="CDD:73060"
misc_feature 307853..307882
/gene="ugpC"
/locus_tag="Avi_0359"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73060"
misc_feature 307913..307930
/gene="ugpC"
/locus_tag="Avi_0359"
/note="Walker B; other site"
/db_xref="CDD:73060"
misc_feature 307937..307948
/gene="ugpC"
/locus_tag="Avi_0359"
/note="D-loop; other site"
/db_xref="CDD:73060"
misc_feature 308015..308035
/gene="ugpC"
/locus_tag="Avi_0359"
/note="H-loop/switch region; other site"
/db_xref="CDD:73060"
gene 308709..309200
/locus_tag="Avi_0360"
/db_xref="GeneID:7387805"
CDS 308709..309200
/locus_tag="Avi_0360"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548246.1"
/db_xref="GI:222147289"
/db_xref="GeneID:7387805"
/translation="MPVKLLFAAMAGAAMALPRFRAEDTPPLVAANADHLSLQPAPIN
PDWILEGDPQARLANHSQSPDEASSTAVWDCTAGSFRWYFGWDETVVIQEGEVHVTAQ
DGTERLLKTGDIAYFKGGTWATWRIETYVRKIAFLRKPFPEPIATLYRLRNALRSGSR
API"
misc_feature 308796..309122
/locus_tag="Avi_0360"
/note="Predicted enzyme of the cupin superfamily [General
function prediction only]; Region: COG3450"
/db_xref="CDD:33253"
gene 309287..310234
/gene="gshB"
/locus_tag="Avi_0361"
/db_xref="GeneID:7387806"
CDS 309287..310234
/gene="gshB"
/locus_tag="Avi_0361"
/note="catalyzes the second step in the glutathione
biosynthesis pathway, where it synthesizes ATP +
gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate +
glutathione"
/codon_start=1
/transl_table=11
/product="glutathione synthetase"
/protein_id="YP_002548247.1"
/db_xref="GI:222147290"
/db_xref="GeneID:7387806"
/translation="MAQIRNVAVQMDHVSSINISGDSTFAMSLEAQARGYKLFHYTPD
RLTMRDGRVYATVEPMELRDVKGDHFTLGSPERVDLSTMDVVLLRQDPPFDMAYITAT
HMLERIHPKTLVVNDPAWVRNSPEKIFVTEYADLMPPTLITRDPAEIAAFRAEQGDII
LKPLYGNGGAGVFHSTRDDRNFSSLMEMFGQMFREPFIAQGYLPAVRKGDKRIILVDG
EPVGAINRVPAEHDARSNMHAGGKPEPTELTTREREICARIGPALRERGFLLVGIDVI
GDYMTEINVTSPTGIREVKNFGGADIAGLLWDAIEKKRS"
misc_feature 309302..310231
/gene="gshB"
/locus_tag="Avi_0361"
/note="glutathione synthetase; Provisional; Region:
PRK05246"
/db_xref="CDD:179971"
misc_feature 309302..309652
/gene="gshB"
/locus_tag="Avi_0361"
/note="Prokaryotic glutathione synthetase, N-terminal
domain; Region: GSH-S_N; pfam02951"
/db_xref="CDD:190485"
misc_feature 309662..310180
/gene="gshB"
/locus_tag="Avi_0361"
/note="Prokaryotic glutathione synthetase, ATP-grasp
domain; Region: GSH-S_ATP; pfam02955"
/db_xref="CDD:202486"
gene 310683..312215
/locus_tag="Avi_0363"
/db_xref="GeneID:7387807"
CDS 310683..312215
/locus_tag="Avi_0363"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548248.1"
/db_xref="GI:222147291"
/db_xref="GeneID:7387807"
/translation="MVARVGTVAFQGIDGVPVDVQVMVAPGKIGVQIVGLPDKAVAES
RERVQAALHASGLALPPKRVTINLAPADLPKEGSHFDLAIALGLMAALGAIPADVLGD
YLVVGELNLDGTIAAVAGALPAAMAANALGKGLICPADSGPEAAWAGADMDILAPRSL
IALANHFRGTQVLTRPNPASRALPGNLPDLADIRGQESAKRALEVAAAGGHNLLMVGP
PGSGKSMLAARLPSILPVLSAPELLDVSMIHSIAGQLAGGKLSDRRPFRTPHHSATMA
ALVGGGLRARPGEASLAHNGVLFLDEFPEFSPQVLDALRQPLESGECVIARANHRVTY
PASFQLIAAMNPCRCGMAGEPGHTCARGIRCLTEYQGRISGPLLDRIDIRIDVPAVSA
MDLIKPMAAEKSADVARRVAVARQRQTERFIEAGVPEIRMNARCSTALIEKLAAPDAA
GLQLLRDAAEKFKFSARAYHRVLKVARTLADLDGSEALGRIHLAEAISYRIPSERLTA
AA"
misc_feature 310722..312185
/locus_tag="Avi_0363"
/note="Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0606"
/db_xref="CDD:30951"
misc_feature 310740..>311027
/locus_tag="Avi_0363"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
misc_feature 311265..311846
/locus_tag="Avi_0363"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 311331..311354
/locus_tag="Avi_0363"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(311334..311357,311583..311585,311715..311717)
/locus_tag="Avi_0363"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 311571..311588
/locus_tag="Avi_0363"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 311820..311822
/locus_tag="Avi_0363"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 311880..312182
/locus_tag="Avi_0363"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase_2; pfam13335"
/db_xref="CDD:205515"
gene complement(312499..313467)
/gene="cysK"
/locus_tag="Avi_0364"
/db_xref="GeneID:7387808"
CDS complement(312499..313467)
/gene="cysK"
/locus_tag="Avi_0364"
/codon_start=1
/transl_table=11
/product="cysteine synthase"
/protein_id="YP_002548249.1"
/db_xref="GI:222147292"
/db_xref="GeneID:7387808"
/translation="MSEAKKPGRGRIYGSITETIGDTPIVRLDKLAKEKGVKAHLLAK
LEFFNPIASVKDRIGVAMIESLETQGTITPGKTVLVEPTSGNTGIALAFAAAAKGYRL
ILTMPETMSIERRKMLALLGAELVLTEGPKGMKGAIAKAEELAATIPDAIIPQQFENP
ANPEIHRKTTAEEIWNDTNGEVDIFVSGIGTGGTITGTGQVLKAKKPSVQVIAVEPAD
SPVLSGGNPGPHKIQGIGAGFAPKILDTGIYDEVVTVTNDEAFELARLVARLEGVPVG
ISSGAALTAAIKVGQRPENAGKTIVVIIPSFAERYLSTALFAGLGE"
misc_feature complement(312526..313434)
/gene="cysK"
/locus_tag="Avi_0364"
/note="Cysteine synthase [Amino acid transport and
metabolism]; Region: CysK; COG0031"
/db_xref="CDD:30381"
misc_feature complement(312529..313407)
/gene="cysK"
/locus_tag="Avi_0364"
/note="CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a unique
heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine; Region: CBS_like;
cd01561"
/db_xref="CDD:107204"
misc_feature complement(order(312532..312534,312541..312543,
312571..312573,312646..312654,312658..312666,
312937..312942,313105..313110,313117..313122,
313129..313134,313180..313182,313189..313191,
313318..313320,313324..313326,313342..313344,
313387..313395))
/gene="cysK"
/locus_tag="Avi_0364"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:107204"
misc_feature complement(order(312550..312555,312634..312636,
312766..312768,312886..312903,313210..313212,
313303..313305))
/gene="cysK"
/locus_tag="Avi_0364"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107204"
misc_feature complement(313303..313305)
/gene="cysK"
/locus_tag="Avi_0364"
/note="catalytic residue [active]"
/db_xref="CDD:107204"
gene complement(313603..314220)
/gene="rhtB"
/locus_tag="Avi_0365"
/db_xref="GeneID:7387809"
CDS complement(313603..314220)
/gene="rhtB"
/locus_tag="Avi_0365"
/codon_start=1
/transl_table=11
/product="RhtB family transporter"
/protein_id="YP_002548250.1"
/db_xref="GI:222147293"
/db_xref="GeneID:7387809"
/translation="MTLASLLAYAGALFIAAAIPGPGMTAIVARALGSGFRPTFFMGL
GLILGDLCYLTAVILGLAYIAQTFVTPFLIIKFAGTLYLAYIAWKLWTAGLLPQNIEA
RKSVGVMASFLSGLFVTLGNPKTMLFYVALVPTLIPLEAIGPADYGLLVGTTFVVLMA
VLIPYILMAAKARLLLKQPSALKLLNRAAASILAGTAAYIATKAA"
misc_feature complement(313702..314151)
/gene="rhtB"
/locus_tag="Avi_0365"
/note="Putative threonine efflux protein [Amino acid
transport and metabolism]; Region: RhtB; COG1280"
/db_xref="CDD:31471"
gene 314351..314983
/gene="rhtB"
/locus_tag="Avi_0366"
/db_xref="GeneID:7387810"
CDS 314351..314983
/gene="rhtB"
/locus_tag="Avi_0366"
/codon_start=1
/transl_table=11
/product="RhtB family transporter"
/protein_id="YP_002548251.1"
/db_xref="GI:222147294"
/db_xref="GeneID:7387810"
/translation="MPTTTSLLAFALICLGMALTPGPNMVYLVSRSICQGPMAGLISL
GGVALGFLIYMLMSVLGITVLLMAVPYAYEALKLAGAAYLAYLAWQAVRPGGRSPFQV
RDLPKDSPRRLFAMGLVTNLLNPKVAVLYLSLLPQFIDPANGSVFMQSLLLGLTQIAI
GTTVNGIIALMAGSIALFLSRRPLWIMVQRWLMGTVLAVLAVRMATQAQR"
misc_feature 314357..314974
/gene="rhtB"
/locus_tag="Avi_0366"
/note="Putative threonine efflux protein [Amino acid
transport and metabolism]; Region: RhtB; COG1280"
/db_xref="CDD:31471"
gene complement(314986..315876)
/locus_tag="Avi_0367"
/db_xref="GeneID:7387811"
CDS complement(314986..315876)
/locus_tag="Avi_0367"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_002548252.1"
/db_xref="GI:222147295"
/db_xref="GeneID:7387811"
/translation="MAPDGLTLRQGYFNDPSAFQGLVDLLHDVFGIDIGAQEQLGGPD
PTCMPFGYFDRSGRCIANFSAFAMPLMINGTTVTAAGYQSGAVRPEFRGRGLYRDLMQ
RAFAWAEHAGYRTGILLTDKPALYQPYGFRIVPHCKFRGPSQAFQPITNSNARQLNLK
SEADLALLRDMLICRQPVSNHFAVVSQTEMFLLNAHFDASITLSLLPSLKAVIAWKYA
NDGSFKLLDIVTQDIPPLSTILSHLNVRARSVEAYFPPDRLSWEGHPVPYESSCSLMM
SGLGLDAAAEPLMLSPMADF"
misc_feature complement(315532..>315621)
/locus_tag="Avi_0367"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(315583..315588,315616..315621))
/locus_tag="Avi_0367"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(315885..316349)
/gene="dut"
/locus_tag="Avi_0368"
/db_xref="GeneID:7387812"
CDS complement(315885..316349)
/gene="dut"
/locus_tag="Avi_0368"
/codon_start=1
/transl_table=11
/product="deoxyuridine 5primetriphosphate
nucleotidohydrolase"
/protein_id="YP_002548253.1"
/db_xref="GI:222147296"
/db_xref="GeneID:7387812"
/translation="MHDTSAPRLHLKRLPHGEGLELPAYETAGAAGMDLRAAVTEAEP
LTLAPGKRALVPTGLIMEIPQGFEAQIRPRSGLAFKNGITCLNTPGTIDSDYRGEVKV
LLINLGAEDFTITRGMRIAQMVIAPVTQAQVIEVTETSDTVRGTGGFGSTGV"
misc_feature complement(315975..316259)
/gene="dut"
/locus_tag="Avi_0368"
/note="Trimeric dUTP diphosphatases; Region:
trimeric_dUTPase; cd07557"
/db_xref="CDD:143638"
misc_feature complement(order(315984..315986,315996..315998,
316005..316019,316029..316031,316035..316037,
316041..316043,316047..316049,316068..316070,
316077..316079,316095..316103,316119..316136,
316140..316142,316188..316190,316194..316199,
316212..316214,316254..316259))
/gene="dut"
/locus_tag="Avi_0368"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:143638"
misc_feature complement(order(316047..316052,316062..316064,
316071..316079,316122..316130))
/gene="dut"
/locus_tag="Avi_0368"
/note="active site"
/db_xref="CDD:143638"
gene 316434..318017
/gene="prfC"
/locus_tag="Avi_0369"
/db_xref="GeneID:7387813"
CDS 316434..318017
/gene="prfC"
/locus_tag="Avi_0369"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 3"
/protein_id="YP_002548254.1"
/db_xref="GI:222147297"
/db_xref="GeneID:7387813"
/translation="MAETLAEAVSRRRTFAIIAHPDAGKTTLTEKLLLFGGAIQLAGE
VKAKKDRIQTRSDWMKIERERGISVVTSVMTFEYEGNVFNILDTPGHEDFADDTYRTL
TAVDAAVMVIDAAKGIEPRTLKLFEVCRMRDIPIITFVNKMDRESRDIFEVLDEVEEK
LALDTAPITWPVGRSKSFCGSYNLVDNTFRGSDKQVEALPVNSPKNVAENLPENERQT
FIDELELAQEACRPFDRQAFLEGHMTPVFFGSALRNFGVRDLINALGDFAPPPRDQMA
DIRKVHAAEDKMTAFVFKIQANMDPNHRDRIAFARICSGKLERGMKARLARTGKLMGL
TAPQFFFASQRQLADTAFAGDVVGIPNHGTLRIGDTLTEGEALVFQGVPNFSPEILRR
VRLEDAMKAKKLKEALQQMAEEGVVQLFSPEDGSPAIVGVVGALQLDVLKERLSGEYT
LPVSFEMSRFSVCRWISSDQPGELDKFMTARRGDICRDLDGDPVFMAQDAFSLRYEAE
RYPAIKMVAIKEYHVAKAA"
misc_feature 316434..317996
/gene="prfC"
/locus_tag="Avi_0369"
/note="Peptide chain release factor RF-3 [Translation,
ribosomal structure and biogenesis]; Region: PrfC;
COG4108"
/db_xref="CDD:33865"
misc_feature 316464..317246
/gene="prfC"
/locus_tag="Avi_0369"
/note="Release Factor 3 (RF3) protein involved in the
terminal step of translocation in bacteria; Region: RF3;
cd04169"
/db_xref="CDD:206732"
misc_feature 316488..316511
/gene="prfC"
/locus_tag="Avi_0369"
/note="G1 box; other site"
/db_xref="CDD:206732"
misc_feature order(316491..316493,316497..316499,316509..316514,
316521..316523,316530..316535,316647..316652,
316704..316709,316776..316781,316887..316889,
316899..316901)
/gene="prfC"
/locus_tag="Avi_0369"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206732"
misc_feature order(316497..316514,316854..316859,316863..316865,
317181..317189)
/gene="prfC"
/locus_tag="Avi_0369"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206732"
misc_feature 316614..316649
/gene="prfC"
/locus_tag="Avi_0369"
/note="Switch I region; other site"
/db_xref="CDD:206732"
misc_feature 316635..316637
/gene="prfC"
/locus_tag="Avi_0369"
/note="G2 box; other site"
/db_xref="CDD:206732"
misc_feature 316692..316703
/gene="prfC"
/locus_tag="Avi_0369"
/note="G3 box; other site"
/db_xref="CDD:206732"
misc_feature 316698..316754
/gene="prfC"
/locus_tag="Avi_0369"
/note="Switch II region; other site"
/db_xref="CDD:206732"
misc_feature 316854..316865
/gene="prfC"
/locus_tag="Avi_0369"
/note="G4 box; other site"
/db_xref="CDD:206732"
misc_feature 317181..317189
/gene="prfC"
/locus_tag="Avi_0369"
/note="G5 box; other site"
/db_xref="CDD:206732"
misc_feature 317301..317555
/gene="prfC"
/locus_tag="Avi_0369"
/note="RF3_II: this subfamily represents the domain II of
bacterial Release Factor 3 (RF3). Termination of protein
synthesis by the ribosome requires two release factor (RF)
classes. The class II RF3 is a GTPase that removes class I
RFs (RF1 or RF2) from the...; Region: RF3_II; cd03689"
/db_xref="CDD:58080"
gene complement(318083..319486)
/locus_tag="Avi_0370"
/db_xref="GeneID:7387814"
CDS complement(318083..319486)
/locus_tag="Avi_0370"
/codon_start=1
/transl_table=11
/product="OtsA trehalose-6-phosphate synthase"
/protein_id="YP_002548255.1"
/db_xref="GI:222147298"
/db_xref="GeneID:7387814"
/translation="MSRLVVVSNRVPVPDKTNKAPAGGLAVALRAALEDKGGIWMGWS
GVSSGEEEAGELAMIEDGKITYALTDLTDRDVDEYYHGFANRVLWPTFHYRLDLTDYA
RKDMTGYFRVNRFFAERLVPLLKPDDTIWVQDYHLIPLAKELRQMGVKNRIGFFLHIP
LPPADVLFAMPVYETLIESLAHYDLVGFQTDFDHANFVGALVREGIGEAISGNKIKSH
DRTFKAGHYPIGIETAAFAAYARRAVRNVMVKRAAQSIEGKALVIGVDRLDYSKGLTQ
RLDAYEHFINANPNYQGKVTYLQITPKSRSEVPEYEAMQRTVAEQAGRVNGALGTVDW
VPIRYMTRSVARPVLAGLYRLAKVGLVTPMRDGMNLVAKEYVAAQDPDDPGVLVLSRF
AGAARELKGALLVNPYDTEGTAQAIARALDMPLAERQQRWKGMMDHLLVNDVNHWCDT
FLSDLMEMPTEKTAEAA"
misc_feature complement(318116..319480)
/locus_tag="Avi_0370"
/note="alpha,alpha-trehalose-phosphate synthase
[UDP-forming]; Region: trehalose_OtsA; TIGR02400"
/db_xref="CDD:162840"
misc_feature complement(318122..319480)
/locus_tag="Avi_0370"
/note="Trehalose-6-Phosphate Synthase (TPS) is a
glycosyltransferase that catalyses the synthesis of
alpha,alpha-1,1-trehalose-6-phosphate from
glucose-6-phosphate using a UDP-glucose donor. It is a key
enzyme in the trehalose synthesis pathway. Trehalose is
a...; Region: GT1_TPS; cd03788"
/db_xref="CDD:99963"
misc_feature complement(order(318365..318367,318374..318379,
318440..318442,318671..318673,318686..318688,
319013..319015,319079..319081,319085..319087,
319247..319249,319415..319420,319457..319459))
/locus_tag="Avi_0370"
/note="active site"
/db_xref="CDD:99963"
misc_feature complement(318683..318709)
/locus_tag="Avi_0370"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:99963"
gene complement(319516..320316)
/locus_tag="Avi_0371"
/db_xref="GeneID:7387815"
CDS complement(319516..320316)
/locus_tag="Avi_0371"
/codon_start=1
/transl_table=11
/product="Trehalose-6-phosphatase"
/protein_id="YP_002548256.1"
/db_xref="GI:222147299"
/db_xref="GeneID:7387815"
/translation="MENQQSAIKRSPARTEQKDAAALLFDLLQAEPHRYALFLDIDGT
LLDLAESPDGIRVPVGLADDLAALSGRMGGALALVTGRALAYADRLFAPKHFPIAGLH
GTERRTVEGTIIRSEPSPAFLAVKEELPKLEQAWPGVLVEDKGAAIAVHYRQAPACAD
VVEKAMADAFKAAGPGYELQRGKMVVEIRPDSADKGRALQSYLAEPPFTDRVAIAIGD
DVTDEAMFECVNRLGGLSIRVGDLEGSVASQSLASPQLLRDTLARLAR"
misc_feature complement(319558..320217)
/locus_tag="Avi_0371"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:212620"
misc_feature complement(319600..320211)
/locus_tag="Avi_0371"
/note="HAD-superfamily hydrolase, subfamily IIB; Region:
HAD-SF-IIB; TIGR01484"
/db_xref="CDD:162385"
misc_feature complement(order(320074..320079,320191..320199))
/locus_tag="Avi_0371"
/note="active site"
/db_xref="CDD:119389"
misc_feature complement(320182..320199)
/locus_tag="Avi_0371"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature complement(320077..320079)
/locus_tag="Avi_0371"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 320529..321386
/gene="thiD"
/locus_tag="Avi_0372"
/db_xref="GeneID:7387816"
CDS 320529..321386
/gene="thiD"
/locus_tag="Avi_0372"
/codon_start=1
/transl_table=11
/product="phosphomethylpyrimidine kinase"
/protein_id="YP_002548257.1"
/db_xref="GI:222147300"
/db_xref="GeneID:7387816"
/translation="MTVQTNDETPLPRIANVLSIAGSDPSGGAGIQADLKVFSALGVY
GMAALTALTAQNTQGVAAVELLDPMFVARQVETVFADIRVDAVKIGMLANADIVGAVA
AVLSSHPAVPVILDPVMVAKGGAALLDDKAVGALVGQLLPRVRLITPNLPEAAALLRV
AEAVDRDGMEAQARALLGLGAKAVLLKGGHLPGNESPDLLVTPTLTLWLEGKRIATAN
THGTGCSLSSAIAAELAKADDNRTNEALAHAVTVAKAWLAGAVRSSGQLTVGSGHGPV
HHFYQTWPK"
misc_feature 320574..321320
/gene="thiD"
/locus_tag="Avi_0372"
/note="4-amino-5-hydroxymethyl-2-methyl-pyrimidine
phosphate kinase (HMPP-kinase) catalyzes two consecutive
phosphorylation steps in the thiamine phosphate
biosynthesis pathway, leading to the synthesis of vitamin
B1. The first step is the phosphorylation of...; Region:
HMPP_kinase; cd01169"
/db_xref="CDD:29353"
misc_feature order(320574..320576,320595..320597,320601..320606,
320610..320612,320622..320624,320631..320636,
320643..320645,320652..320669,320673..320675,
320682..320696,320709..320714,320718..320720,
320724..320729,320736..320738,320745..320747,
320757..320762)
/gene="thiD"
/locus_tag="Avi_0372"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29353"
misc_feature order(320592..320594,320628..320630,320691..320693,
320799..320801,321198..321200)
/gene="thiD"
/locus_tag="Avi_0372"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29353"
misc_feature order(320874..320876,320985..320987,321087..321089,
321189..321191,321195..321197)
/gene="thiD"
/locus_tag="Avi_0372"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29353"
gene complement(321398..321802)
/locus_tag="Avi_0373"
/db_xref="GeneID:7387817"
CDS complement(321398..321802)
/locus_tag="Avi_0373"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548258.1"
/db_xref="GI:222147301"
/db_xref="GeneID:7387817"
/translation="MQIDGQCHCGNVTYHAEIDPENVGICHCTDCQRLTGSPFRVTVS
TPRDKLHFTGSPPKSYVKYGDNGRVRHQFFCPDCGAPVLTTGEGTDADIWGIRWGSIN
QRDALLPKHQSWRRSSVLWLDSIGALPGSETE"
misc_feature complement(321404..321802)
/locus_tag="Avi_0373"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3791"
/db_xref="CDD:33586"
gene complement(321955..322530)
/locus_tag="Avi_0375"
/db_xref="GeneID:7387818"
CDS complement(321955..322530)
/locus_tag="Avi_0375"
/codon_start=1
/transl_table=11
/product="tyrosine/serine protein phosphatase"
/protein_id="YP_002548259.1"
/db_xref="GI:222147302"
/db_xref="GeneID:7387818"
/translation="MSILLAKATRYTALACLTGLLSCGAYLGYLRLTGNFHEVIPGEF
YRSAQPSAADIKDYAGRYGIKTIVNLRGPSPSPWYAQEVATARELGIGHIDFRMSAGK
GLTIDKAEQLVALLKSAPKPILIHCEGGADRSGLASVLYLQQIAGVQEDTAEQQLWPV
IYGHVGIPYVTKAYAMDRSWLDFEKAMGIES"
misc_feature complement(322075..322416)
/locus_tag="Avi_0375"
/note="Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr; Region: PTPc;
cl00053"
/db_xref="CDD:213076"
gene complement(322649..323560)
/locus_tag="Avi_0377"
/db_xref="GeneID:7387819"
CDS complement(322649..323560)
/locus_tag="Avi_0377"
/codon_start=1
/transl_table=11
/product="pirin protein"
/protein_id="YP_002548260.1"
/db_xref="GI:222147303"
/db_xref="GeneID:7387819"
/translation="MSIRPVKHESRATPTMEGAGVKLHRVFGFGDPSMTDPFLMMDDF
RNDDPQDYIRGFPWHPHRGIETITYVLAGTVDHGDSLGNHGQLGAGDLQWMTAGSGIM
HQEMPKGDFSGKMHGFQLWANLPSSLKMTAPRYQDIKSADIPVVVDDDGTAVRVISGD
FWGKSGPVDGIAAEPVYLDISVPPGKTKRFPVDTYRSAFAYIFAGSGSFRDASKPFGV
KVEKEFQGEELNIRDLSGNRTLVVFDTGDEITVQAGEKGIRFLLVTGKPIKEPVAWHG
PIVMNSREELMEAMRELKNGTFIKADH"
misc_feature complement(322664..323560)
/locus_tag="Avi_0377"
/note="Pirin-related protein [General function prediction
only]; Region: COG1741"
/db_xref="CDD:31927"
misc_feature complement(323198..323503)
/locus_tag="Avi_0377"
/note="Pirin; Region: Pirin; pfam02678"
/db_xref="CDD:202346"
misc_feature complement(322664..323032)
/locus_tag="Avi_0377"
/note="Pirin C-terminal cupin domain; Region: Pirin_C;
pfam05726"
/db_xref="CDD:203319"
gene 323837..324652
/locus_tag="Avi_0378"
/db_xref="GeneID:7387820"
CDS 323837..324652
/locus_tag="Avi_0378"
/codon_start=1
/transl_table=11
/product="glutamine amidotransferase"
/protein_id="YP_002548261.1"
/db_xref="GI:222147304"
/db_xref="GeneID:7387820"
/translation="MCRWAAYRGEPLFIEELVSSPAHSLIEQSVCATRAKTSTNADGF
GLAWYGDRPEPGRFRDVLPAWSDCNLKSIARQIRSPLFLAHVRAATHGATRRDNCHPF
VYGNWSFMHNGQIDHFDRIRRAMESMLDDEYFNARTGSTDSELLFLLAMQFGMKHRPI
AAMAEAIGFAERLSAEIIGTTRVRFTAAFSDGEALYAVRYSTDAFAPTLYAGPMGHKG
GHCLVSEPLNDDTETWVEIPPGSAVILNDEGLNVMDFEPEIGNAPARVTEMAG"
misc_feature 323837..324577
/locus_tag="Avi_0378"
/note="Predicted glutamine amidotransferase [General
function prediction only]; Region: COG0121"
/db_xref="CDD:30470"
misc_feature 323837..324577
/locus_tag="Avi_0378"
/note="Glutamine amidotransferases class-II
(Gn-AT)_YafJ-type. YafJ is a glutamine
amidotransferase-like protein of unknown function found in
prokaryotes, eukaryotes and archaea. YafJ has a conserved
structural fold similar to those of other class II...;
Region: YafJ; cd01908"
/db_xref="CDD:48481"
misc_feature order(323840..323842,324095..324097,324170..324178,
324260..324262)
/locus_tag="Avi_0378"
/note="putative active site [active]"
/db_xref="CDD:48481"
misc_feature order(323996..323998,324005..324010,324146..324148,
324206..324211,324299..324301)
/locus_tag="Avi_0378"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:48481"
gene complement(324790..325719)
/locus_tag="Avi_0380"
/db_xref="GeneID:7387821"
CDS complement(324790..325719)
/locus_tag="Avi_0380"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002548262.1"
/db_xref="GI:222147305"
/db_xref="GeneID:7387821"
/translation="MIELRHLRYAVTVAEEGHLTRAAERLGLQQPPLSQQIKALETEV
GVTLFIRQPRGMALTEAGVAFIARARQILADVDMAVEAAQRAARGEIGELAIGFTTSA
VFHPLVPSIVRAMRLSSPSLKLRLDEGSTTELLCELSAGRLDAAFIRATAGALPGSGP
TLSIETVDIEDMVLALPDTHPLALHSQNGDRDTVALAALAGETFVLYRRPLAQGLYDR
IIAACQAAGFSPNVAQEAPKLVSTLSLVAAGLGLSIIPQSMARLETSGVAYRRFAPGS
GLDAPLSLAYRRDSYRGALKTFVEEVRRQVSTP"
misc_feature complement(324814..325716)
/locus_tag="Avi_0380"
/note="DNA-binding transcriptional regulator HcaR;
Provisional; Region: PRK09906"
/db_xref="CDD:182137"
misc_feature complement(325534..325710)
/locus_tag="Avi_0380"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(324814..325443)
/locus_tag="Avi_0380"
/note="The C-terminal substrate binding domain of
LysR-type transcrptional regulator BudR, which is
responsible for activation of the expression of the
butanediol operon genes; contains the type 2 periplasmic
binding fold; Region: PBP2_BudR; cd08451"
/db_xref="CDD:176142"
misc_feature complement(order(324922..324924,324976..324981,
324985..324990,325006..325011,325066..325071,
325189..325191,325336..325338,325342..325344,
325348..325350,325372..325374,325381..325386,
325390..325395,325402..325404,325426..325428))
/locus_tag="Avi_0380"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176142"
misc_feature complement(order(325075..325077,325096..325101,
325273..325275,325423..325425))
/locus_tag="Avi_0380"
/note="putative substrate binding pocket [chemical
binding]; other site"
/db_xref="CDD:176142"
gene 325810..326409
/gene="chrA"
/locus_tag="Avi_0381"
/db_xref="GeneID:7387822"
CDS 325810..326409
/gene="chrA"
/locus_tag="Avi_0381"
/codon_start=1
/transl_table=11
/product="chromate transport protein"
/protein_id="YP_002548263.1"
/db_xref="GI:222147306"
/db_xref="GeneID:7387822"
/translation="MVMTKTVQRETVQAETGRAEPPLHHPGIAELFTGFLGLGLMGFG
GVLPMARRMMVEDRHWLSPGEFMDLLGLCQFLPGGNIINMSVAVGLKFQGWKGALAAA
FGLIAAPTAIVICLGYIYDRYRDNPQVEHLFAGLAAAASGLLISLAWKVLQPLKHKLW
ALAIVALCFIAIAVFRLPLFATMLVLAPVSIVLSWKLSK"
misc_feature 325951..326400
/gene="chrA"
/locus_tag="Avi_0381"
/note="Chromate transport protein ChrA [Inorganic ion
transport and metabolism]; Region: ChrA; COG2059"
/db_xref="CDD:32242"
misc_feature 325951..326385
/gene="chrA"
/locus_tag="Avi_0381"
/note="Chromate transporter; Region: Chromate_transp;
pfam02417"
/db_xref="CDD:190304"
gene 326406..326927
/gene="chrA"
/locus_tag="Avi_0382"
/db_xref="GeneID:7387823"
CDS 326406..326927
/gene="chrA"
/locus_tag="Avi_0382"
/codon_start=1
/transl_table=11
/product="chromate transport protein"
/protein_id="YP_002548264.1"
/db_xref="GI:222147307"
/db_xref="GeneID:7387823"
/translation="MIATLISLALIFTELSLIAFGGGNAILPEMQRRVVEVQHWMSAS
EFSALFALAQAAPGPNMMVVPLVGWHVAGFAGVVVTSIAKFGPSSLITAGAVTLWERF
KDRPWRRIVQAGLAPMTAGLVTSSAAVITKASATSPILIGIATGCAVLTAITKVHPLI
ALGSGALIGLIFI"
misc_feature 326406..326870
/gene="chrA"
/locus_tag="Avi_0382"
/note="Chromate transport protein ChrA [Inorganic ion
transport and metabolism]; Region: ChrA; COG2059"
/db_xref="CDD:32242"
misc_feature 326415..326879
/gene="chrA"
/locus_tag="Avi_0382"
/note="Chromate transporter; Region: Chromate_transp;
pfam02417"
/db_xref="CDD:190304"
gene complement(326924..328141)
/gene="coaBC"
/locus_tag="Avi_0383"
/db_xref="GeneID:7387824"
CDS complement(326924..328141)
/gene="coaBC"
/locus_tag="Avi_0383"
/note="catalyzes the conjugation of cysteine to
4'-phosphopantothenate to form
4-phosphopantothenoylcysteine, which is then
decarboxylated to form 4'-phosphopantotheine"
/codon_start=1
/transl_table=11
/product="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase"
/protein_id="YP_002548265.1"
/db_xref="GI:222147308"
/db_xref="GeneID:7387824"
/translation="MTLTDKRILLIISGGIAAYKSLELIRRLRERGASVRPIMTRAAQ
EFITPLAVGALSASHVYTDLFSREDEQDVGHIRLARDCDLIVVAPVTADLMAKMAHGL
ADDLASAVLLAADRPVLIAPAMNPKMWAHPATLRNVAQLKADGIQFIGPMAGEMAESG
EKGLGRMAEPLEIVAKVEACFDDSFKPLAGKKAIVTSGPTHEPIDPVRYIANRSSGKQ
GHAIAGALARLGAEVTLVSGPVSLADPTGVKTIHVERAEDMRDAVLAHLPADIAVMVA
AVADWRVEMASEHKIKKQPGDAAPMLTLTENPDILKTVGHHEKRPALVIGFAAETQNV
EDNGRAKLERKGADLIVANDVSPQTGIMGGDRNRVTLIYKDRSEDWPDMDKDAVADRL
AQTIAGMLGFKSP"
misc_feature complement(326942..328141)
/gene="coaBC"
/locus_tag="Avi_0383"
/note="bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase; Validated;
Region: PRK05579"
/db_xref="CDD:180143"
misc_feature complement(327740..328126)
/gene="coaBC"
/locus_tag="Avi_0383"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:202241"
misc_feature complement(327026..327580)
/gene="coaBC"
/locus_tag="Avi_0383"
/note="DNA / pantothenate metabolism flavoprotein; Region:
DFP; pfam04127"
/db_xref="CDD:202899"
gene complement(328236..329270)
/gene="fsrR"
/locus_tag="Avi_0384"
/db_xref="GeneID:7387825"
CDS complement(328236..329270)
/gene="fsrR"
/locus_tag="Avi_0384"
/codon_start=1
/transl_table=11
/product="two component sensor kinase"
/protein_id="YP_002548266.1"
/db_xref="GI:222147309"
/db_xref="GeneID:7387825"
/translation="MNVRILYLDDDPAIVRLVQKALGRNGHSVTHAEDLERALGFLAS
ENFDVIVLDHYLSNMTGHDVLAHLRGRHIMTPVVYVTGSNEARIAIDAIKAGASDYVI
KTTSEDFLSLLESAIRQSVENARLREAKVKADEEIRLAKERAEALLSEVNHRVANSLA
LVASLLRLQIANARSDEVKAELTETQARITAIAGMHRSLYTSDDVSRVDMDIYIANLV
REIGGSLANPDKPITLTVDAEPISLTADRAVSIGMIVTELVTNAIKYAYPDRKDGEIR
VRLCHAQPGHALLTVEDDGIGISPGAAPKGTGLGSRIIKSMAATLGEGLFYQEIAAGT
IACVPIDLAR"
misc_feature complement(328947..329258)
/gene="fsrR"
/locus_tag="Avi_0384"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature complement(328920..329255)
/gene="fsrR"
/locus_tag="Avi_0384"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(328962..328964,328971..328973,
329028..329030,329088..329090,329112..329114,
329241..329246))
/gene="fsrR"
/locus_tag="Avi_0384"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(329112..329114)
/gene="fsrR"
/locus_tag="Avi_0384"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(329088..329096,329100..329105))
/gene="fsrR"
/locus_tag="Avi_0384"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(order(328959..328961,328962..328964))
/gene="fsrR"
/locus_tag="Avi_0384"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(328266..328868)
/gene="fsrR"
/locus_tag="Avi_0384"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG3920"
/db_xref="CDD:33706"
misc_feature complement(328599..328823)
/gene="fsrR"
/locus_tag="Avi_0384"
/note="Histidine kinase; Region: HisKA_2; pfam07568"
/db_xref="CDD:203685"
misc_feature complement(328257..328511)
/gene="fsrR"
/locus_tag="Avi_0384"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(328263..328265,328269..328274,
328290..328292,328338..328349,328377..328382,
328386..328388,328392..328394,328398..328400,
328479..328481,328488..328490,328500..328502))
/gene="fsrR"
/locus_tag="Avi_0384"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(328488..328490)
/gene="fsrR"
/locus_tag="Avi_0384"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(328341..328343,328347..328349,
328380..328382,328386..328388))
/gene="fsrR"
/locus_tag="Avi_0384"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(329286..329723)
/locus_tag="Avi_0385"
/db_xref="GeneID:7387826"
CDS complement(329286..329723)
/locus_tag="Avi_0385"
/codon_start=1
/transl_table=11
/product="two component response regulator"
/protein_id="YP_002548267.1"
/db_xref="GI:222147310"
/db_xref="GeneID:7387826"
/translation="MKAVAKEVTIVMVEDDEGHARLIEKNVRRAGVNNEIVPFTNGTD
ALDYILGTDRSGETSADRYLLILLDLNLPDMSGTDILEQVKTNQHTRRLPVVILTTTD
DQREIQRCYDLGANVYITKPVDYDNFANAIRQLGLFFSVMQIP"
misc_feature complement(329325..329696)
/locus_tag="Avi_0385"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature complement(329319..329687)
/locus_tag="Avi_0385"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(329358..329363,329370..329372,
329427..329429,329493..329495,329517..329519,
329679..329684))
/locus_tag="Avi_0385"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(329517..329519)
/locus_tag="Avi_0385"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(329493..329501,329505..329510))
/locus_tag="Avi_0385"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(329355..329363)
/locus_tag="Avi_0385"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(329726..331213)
/locus_tag="Avi_0386"
/db_xref="GeneID:7387827"
CDS complement(329726..331213)
/locus_tag="Avi_0386"
/codon_start=1
/transl_table=11
/product="two component sensor kinase"
/protein_id="YP_002548268.1"
/db_xref="GI:222147311"
/db_xref="GeneID:7387827"
/translation="MSATNAGFIRSSLFVLGLGCLLLVSLIGSTLWLTGKTRVTFGTV
VEERVIRRASADLMQTLTDAETGQRGYLITRDVAFLTPYSQAIGDVTTEMDSLVHLLE
PRPEHAPDVEKLRELVKAKLEELARTVELTRSGDIRQAYELVRAGYGKQLMDQIRTVL
DEVRDESDNRIDQGIASQLLAIGWLQVFTIGGAVAIVIVIGGAILIIIQHVRDLLKAR
QEVEVLNAGLEERVQERTEDLMQANQEIQRFAYIITHDLRAPLVNIMGFTAELDSALQ
ILKTYVLADGQPLTPQQIEDARLAASEDLPEAISFIRSSTRKMDGLINAILKISRDGR
RQLKPEELDLKPLIETTAASVHHQISESGGHTEISTDVASIISDRLSLEQILGNLFDN
AIKYKSPDRPVVLSIRAVSDGRHFIRLEIEDNGRGIAEQDHERIFELFRRSGQQNQVG
EGIGLAHVRSLTRNLGGEITVRSKIGVGSTFILRLPRDLSKLVGT"
misc_feature complement(330686..331084)
/locus_tag="Avi_0386"
/note="CHASE3 domain; Region: CHASE3; pfam05227"
/db_xref="CDD:203215"
misc_feature complement(330221..330487)
/locus_tag="Avi_0386"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cl00080"
/db_xref="CDD:206823"
misc_feature complement(order(330236..330238,330248..330250,
330257..330259,330269..330271,330278..330280,
330290..330292,330413..330415,330422..330424,
330434..330436,330443..330445,330455..330457,
330467..330469))
/locus_tag="Avi_0386"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(330449..330451)
/locus_tag="Avi_0386"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(329759..330070)
/locus_tag="Avi_0386"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(329771..329773,329777..329782,
329795..329797,329801..329803,329849..329860,
329930..329935,329939..329941,329945..329947,
329951..329953,330029..330031,330038..330040,
330050..330052))
/locus_tag="Avi_0386"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(330038..330040)
/locus_tag="Avi_0386"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(329852..329854,329858..329860,
329933..329935,329939..329941))
/locus_tag="Avi_0386"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(331220..332803)
/gene="ubiB"
/locus_tag="Avi_0387"
/db_xref="GeneID:7387828"
CDS complement(331220..332803)
/gene="ubiB"
/locus_tag="Avi_0387"
/codon_start=1
/transl_table=11
/product="2-polyprenylphenol 6-hydroxylase"
/protein_id="YP_002548269.1"
/db_xref="GI:222147312"
/db_xref="GeneID:7387828"
/translation="MSTVSAYFRLARVGWILVREGVVSALPSEGLPPSVGFAKKVAAV
FERKRARGTLRSDRLSQAVERLGPSYAKIGQFLATRPDVVGAELADDLTGLQDRMAFF
PTGEAKASIELSLGRPVEELYASFGEPIAAASIAQVHPCMVETPVGVKQVAVKVIRPG
VRRRFAADLEVMYLVSHLQEMLLPQTRRLRPVEVTKTLEQTTKVEMDLRLEAAALSEL
GENTASDPGFRVPQVDWERTGRDVITMEWIDGVKMSDVEALKAAGHDLDALADTLIQS
FLRHTLRDGFFHADMHPGNLFVDPAGMIVAVDMGICGRLGKKERRFLAEILYGFITRD
YMRVAEVHFEAGYVPSHHNMASFAQAIRAIGEPIHGQPAETISMARLLTLLFEVTELF
DMQTRPELVMLQKTMVVVEGVSRMLNPRFNMWKASEPVVADWIKANLGPKRIVTDMKD
GIRAAVRVAEALPEIAAKTEKFHSELMQMSEHGLRFDESTTDAIGRAQARHSRSGRLA
LWVIALCLLFIAFQLGHGG"
misc_feature complement(331235..332803)
/gene="ubiB"
/locus_tag="Avi_0387"
/note="Predicted unusual protein kinase [General function
prediction only]; Region: AarF; COG0661"
/db_xref="CDD:31005"
misc_feature complement(331469..332785)
/gene="ubiB"
/locus_tag="Avi_0387"
/note="2-polyprenylphenol 6-hydroxylase; Region: UbiB;
TIGR01982"
/db_xref="CDD:162638"
misc_feature complement(order(331880..331885,331913..331915,
331919..331921,332048..332050,332060..332071,
332111..332113))
/gene="ubiB"
/locus_tag="Avi_0387"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:88273"
gene complement(332845..333621)
/gene="ubiE"
/locus_tag="Avi_0388"
/db_xref="GeneID:7387829"
CDS complement(332845..333621)
/gene="ubiE"
/locus_tag="Avi_0388"
/note="Catalyzes the carbon methylation reaction in the
biosynthesis of ubiquinone"
/codon_start=1
/transl_table=11
/product="ubiquinone/menaquinone biosynthesis
methyltransferase"
/protein_id="YP_002548270.1"
/db_xref="GI:222147313"
/db_xref="GeneID:7387829"
/translation="MVASRTSADGGMETSYGFRDVAEGEKQGLVNDVFHKVAKRYDIM
NDVMSAGMHRVWKDALIAALNPRKDAGYKVLDVAGGTGDIAFRIIEASRRLAHATVLD
INGSMLGVGQERAQKKGLSDNLTFVEANAEALPFEANQFDAYTIAFGIRNVPRIDVAL
SEAYRVLKRGGRLLVLEFSEVQMPLLDRFYDQWSFKAIPRFGKMITGEAEPYQYLVES
IRKFPNQQDFAAMITKAGFSKVSFTNYTGGIAALHSGWKI"
misc_feature complement(332848..333570)
/gene="ubiE"
/locus_tag="Avi_0388"
/note="Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226"
/db_xref="CDD:32408"
misc_feature complement(333130..333405)
/gene="ubiE"
/locus_tag="Avi_0388"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(333184..333186,333229..333237,
333313..333318,333373..333393))
/gene="ubiE"
/locus_tag="Avi_0388"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 333812..334705
/gene="mutM"
/locus_tag="Avi_0389"
/db_xref="GeneID:7387830"
CDS 333812..334705
/gene="mutM"
/locus_tag="Avi_0389"
/note="Involved in base excision repair of DNA damaged by
oxidation or by mutagenic agents. Acts as DNA glycosylase
that recognizes and removes damaged bases"
/codon_start=1
/transl_table=11
/product="formamidopyrimidine-DNA glycosylase"
/protein_id="YP_002548271.1"
/db_xref="GI:222147314"
/db_xref="GeneID:7387830"
/translation="MPELPEVETVKRGLAPSMEGRRLTRLELRRTDLRFPLPVDFAAR
TQGRLIVSLSRRAKYLLIDLDDGVSIVSHLGMSGSYRIEAANETGLPGQFHMARSRDE
KHDHVIFHLSGPEGDPLRVIYNDPRRFGFMDMVERRHMDRHAAFAGLGPEPVGNALDA
DYLAFRFKGKAQPLKTALLDQKVIAGLGNIYVCEALWRAHLSPETPARALVNAEGKPV
AALEDLTQAIRTVIAEAIEAGGSSLRDHIQADGSLGYFQHSFNVYDREGEACRTPGCT
GTVERMTQAGRSTFHCPQCQR"
misc_feature 333812..334702
/gene="mutM"
/locus_tag="Avi_0389"
/note="formamidopyrimidine/5-formyluracil/
5-hydroxymethyluracil DNA glycosylase; Validated; Region:
PRK01103"
/db_xref="CDD:179222"
misc_feature 333815..334219
/gene="mutM"
/locus_tag="Avi_0389"
/note="N-terminal domain of Escherichia coli Fpg1/MutM and
related bacterial DNA glycosylases; Region: EcFpg-like_N;
cd08966"
/db_xref="CDD:176800"
misc_feature order(333815..333820,333983..333985,334028..334030,
334034..334042,334118..334123,334187..334198)
/gene="mutM"
/locus_tag="Avi_0389"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176800"
misc_feature 333815..333817
/gene="mutM"
/locus_tag="Avi_0389"
/note="catalytic residue [active]"
/db_xref="CDD:176800"
misc_feature order(333818..333829,333833..333838,333845..333847,
333974..333985,334040..334042)
/gene="mutM"
/locus_tag="Avi_0389"
/note="H2TH interface [polypeptide binding]; other site"
/db_xref="CDD:176800"
misc_feature order(333818..333820,333983..333985)
/gene="mutM"
/locus_tag="Avi_0389"
/note="putative catalytic residues [active]"
/db_xref="CDD:176800"
misc_feature 334028..334030
/gene="mutM"
/locus_tag="Avi_0389"
/note="turnover-facilitating residue; other site"
/db_xref="CDD:176800"
misc_feature order(334037..334039,334190..334192,334196..334198)
/gene="mutM"
/locus_tag="Avi_0389"
/note="intercalation triad [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature 334040..334042
/gene="mutM"
/locus_tag="Avi_0389"
/note="8OG recognition residue [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature order(334121..334123,334193..334195)
/gene="mutM"
/locus_tag="Avi_0389"
/note="putative reading head residues; other site"
/db_xref="CDD:176800"
misc_feature 334256..334546
/gene="mutM"
/locus_tag="Avi_0389"
/note="Formamidopyrimidine-DNA glycosylase H2TH domain;
Region: H2TH; pfam06831"
/db_xref="CDD:115485"
gene 334931..335197
/gene="rpsT"
/locus_tag="Avi_0390"
/db_xref="GeneID:7387831"
CDS 334931..335197
/gene="rpsT"
/locus_tag="Avi_0390"
/note="binds directly to the 16S rRNA and is involved in
post-translational inhibition of arginine and ornithine
decarboxylase"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S20"
/protein_id="YP_002548272.1"
/db_xref="GI:222147315"
/db_xref="GeneID:7387831"
/translation="MANTTSAKKATRKIARRTAINKSRRTRVRNFVRKVEEAIASGDQ
ALAAAALKAAQPELHRAASKGVVHANTASRKISRLASRVKALAA"
misc_feature 334931..335194
/gene="rpsT"
/locus_tag="Avi_0390"
/note="30S ribosomal protein S20; Reviewed; Region: rpsT;
PRK00239"
/db_xref="CDD:178943"
gene 336131..337705
/gene="dnaA"
/locus_tag="Avi_0391"
/db_xref="GeneID:7387832"
CDS 336131..337705
/gene="dnaA"
/locus_tag="Avi_0391"
/note="binds to the dnaA-box as an ATP-bound complex at
the origin of replication during the initiation of
chromosomal replication; can also affect transcription of
multiple genes including itself."
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_002548273.1"
/db_xref="GI:222147316"
/db_xref="GeneID:7387832"
/translation="MQMKMVTASAAASGDEARTIDQAVSPDATGGPNAVVDDTVAGDE
VRYDALFERFSARLRAQVGPDVFASWFGRLKLHSSSKSVIRLSVPTTFLKSWINNRYL
DLITSIFQAEDASILKIEILVRSASRNSRAPVVEDRAVEPSLSSSQKRQAPQSIGQMA
PAIANAAAPQRAPVQGPLFGSPLDSRYTFDGFVEGASNRVAVAAAKTIAEAGAGAVRF
NPLFIHSSVGLGKTHLLQAIANAAIHSPRAPRVVYLTAEYFMWRFATAIRDNDALTLK
DSLRNIDLLIIDDMQFLQGKTIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDQRV
RSRLQGGVAIEMEAPDYDMRLDMLKTRLALAKKEDPSLEIPAEIIAHVARNVASSGRD
LEGAFNQLLFRRSFEANMTIERVDELLAHLVGAAEQKRVRIEDIQRVVARHYNVSRQE
LVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGD
QKLSQEIELLRRLINE"
misc_feature 336272..337702
/gene="dnaA"
/locus_tag="Avi_0391"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 336272..336463
/gene="dnaA"
/locus_tag="Avi_0391"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 336779..337147
/gene="dnaA"
/locus_tag="Avi_0391"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 336803..336826
/gene="dnaA"
/locus_tag="Avi_0391"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(336806..336829,336992..336994,337097..337099)
/gene="dnaA"
/locus_tag="Avi_0391"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 336980..336997
/gene="dnaA"
/locus_tag="Avi_0391"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 337139..337141
/gene="dnaA"
/locus_tag="Avi_0391"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 337427..337696
/gene="dnaA"
/locus_tag="Avi_0391"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(337496..337498,337520..337525,337544..337546,
337562..337570,337595..337609,337616..337618,
337625..337630)
/gene="dnaA"
/locus_tag="Avi_0391"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 337914..338819
/locus_tag="Avi_0392"
/db_xref="GeneID:7387833"
CDS 337914..338819
/locus_tag="Avi_0392"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002548274.1"
/db_xref="GI:222147317"
/db_xref="GeneID:7387833"
/translation="MGAQEWAMLLVLSVLWGGSFLFIGILVKVWPPLTIVTARVALAA
MALWIIVRLSGQPVPRRAEVWLAFLGMGLLNNVIPFTLIVWGQTHIPVGLAAIFNATT
PLFGVIIAHFLTVDEKLTANRLAGVLIGVAGVAVMIGPAVLGHLGADLWGELAVMLAA
VSYAFAGLFGRRFKAMGLAPLLPAAGQVTAATVVLLPITLMVDAPWTLPVPGLDSIAA
LLGLALLSTAVGYVLFFRILSTAGATNLMLVTILIPPSAILLGTLVLGDQVAPRHLVG
MVLIALGLAAIDGRLWRRLRRRAVA"
misc_feature 337932..338762
/locus_tag="Avi_0392"
/note="putative DMT superfamily transporter inner membrane
protein; Provisional; Region: PRK11272"
/db_xref="CDD:183067"
misc_feature 337953..>338252
/locus_tag="Avi_0392"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene complement(338839..339579)
/locus_tag="Avi_0393"
/db_xref="GeneID:7387834"
CDS complement(338839..339579)
/locus_tag="Avi_0393"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="YP_002548275.1"
/db_xref="GI:222147318"
/db_xref="GeneID:7387834"
/translation="MPVDDAFALHDMAIFYDSFNIHGEDGDFYETYPKTPCRILDIGC
GTGSVTLRLARRGHQVTGIDPAPGMLAMAKAKDKEGLVRWIAANAFDLNLEREQFDLI
IMTGHVFQVFLDDEETLLALTNARRHLAPGGQMIIESRNPLLRAWEGWTEAKTRNTAQ
VPSIGPVEVFYQVDRTEGEHVTFDATFTLLKTGEKRISRSCLRFPGRGKVEQLFKAAG
FKSIETLGWWDGRSFDPTSPEIIAIASV"
misc_feature complement(339166..339468)
/locus_tag="Avi_0393"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(339265..339267,339313..339321,
339385..339390,339436..339456))
/locus_tag="Avi_0393"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(339620..340801)
/gene="hemN"
/locus_tag="Avi_0394"
/db_xref="GeneID:7387835"
CDS complement(339620..340801)
/gene="hemN"
/locus_tag="Avi_0394"
/note="catalyzes the oxygen-independent formation of
protoporphyrinogen-IX from coproporphyrinogen-III"
/codon_start=1
/transl_table=11
/product="coproporphyrinogen III oxidase"
/protein_id="YP_002548276.1"
/db_xref="GI:222147319"
/db_xref="GeneID:7387835"
/translation="MAEPTSLLLPDTGEPGFGIYIHWPFCAAKCPYCDFNSHVRHQKI
DQPRFTQAFLKEMETMRAMSGPKTVTSIFLGGGTPSLMDPATVGAILEGIARYWTVPR
GIEITMEANPTSVEAERFRGYRSAGVNRVSLGVQALNDADLKFLGRMHSVEDALKAVR
LAREIFPRMSFDLIYARPNQTIADWDAELKLAISYAVDHLSLYQLTIEEGTPFFGLHK
AGKIITPDEEHAAQLYEATQEITEREGLPAYEVSNHARPGAESRHNLTYWRYGDYAGI
GPGAHGRLTRGHEKLATATEKHPETWLSAVEQNGHGMVIQDALGSEEQADELLLMGLR
LREGVDLARWQQLSGRDPDPVREQFLLEHGFIERLGNSRLRCTPKGMLVLDAVVADLA
C"
misc_feature complement(339623..340765)
/gene="hemN"
/locus_tag="Avi_0394"
/note="coproporphyrinogen III oxidase; Provisional;
Region: PRK09057"
/db_xref="CDD:181629"
misc_feature complement(340109..340726)
/gene="hemN"
/locus_tag="Avi_0394"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(340187..340192,340280..340282,
340400..340402,340469..340477,340568..340573,
340577..340579,340700..340708,340712..340714,
340718..340720,340724..340726))
/gene="hemN"
/locus_tag="Avi_0394"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene complement(340808..341452)
/gene="rdgB"
/locus_tag="Avi_0395"
/db_xref="GeneID:7387836"
CDS complement(340808..341452)
/gene="rdgB"
/locus_tag="Avi_0395"
/note="HAM1-like protein; Rec-dependent growth; RgdB;
yggV; it is suspected that this protein functions to
remove misincorporated bases such as xanthine or
hypoxanthine"
/codon_start=1
/transl_table=11
/product="putative deoxyribonucleotide triphosphate
pyrophosphatase"
/protein_id="YP_002548277.1"
/db_xref="GI:222147320"
/db_xref="GeneID:7387836"
/translation="MRKLETRTIVVASHNAGKIAEIADLIGPFGFTAKSAKELGFIEP
DETGTTFEENAAIKALASAKASGLPALSDDSGLVVDALDGAPGVYTANWAEREDGSRD
FAMAMEKVEHALQEKGAVTQESRTARFVSVLCLGWPDGHTEFFRGEVEGVVAWPPRGT
SGFGYDPIFQPEGFSTTFGEMTSEEKHGWKPGNAQALSHRARAFKLFVETCLGA"
misc_feature complement(340826..341428)
/gene="rdgB"
/locus_tag="Avi_0395"
/note="NTPase/HAM1. This family consists of the HAM1
protein and pyrophosphate-releasing xanthosine/ inosine
triphosphatase. HAM1 protects the cell against mutagenesis
by the base analog 6-N-hydroxylaminopurine (HAP) in E.
Coli and S. cerevisiae. A...; Region: HAM1; cd00515"
/db_xref="CDD:29953"
misc_feature complement(order(340853..340858,340955..340960,
340964..340966,341066..341068,341180..341185,
341222..341230,341390..341392,341399..341404,
341408..341410))
/gene="rdgB"
/locus_tag="Avi_0395"
/note="active site"
/db_xref="CDD:29953"
misc_feature complement(order(341177..341179,341186..341188,
341195..341197,341204..341209,341309..341317))
/gene="rdgB"
/locus_tag="Avi_0395"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29953"
gene complement(341462..341878)
/locus_tag="Avi_0396"
/db_xref="GeneID:7387837"
CDS complement(341462..341878)
/locus_tag="Avi_0396"
/codon_start=1
/transl_table=11
/product="lactoylglutathione lyase"
/protein_id="YP_002548278.1"
/db_xref="GI:222147321"
/db_xref="GeneID:7387837"
/translation="MATSIEGILETSLYVDDLDAAERFYAGLLGLEVIISQPGRHVFL
RCGPGVLLLFNAAETVKPAEPDALPVPAHGAVGPGHACFRMDGAAMDGMASRLLSHGV
AIEADFLWPNGARSIYFRDPAGNSLECAEARLWQIE"
misc_feature complement(341495..341860)
/locus_tag="Avi_0396"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature complement(341483..341857)
/locus_tag="Avi_0396"
/note="This conserved domain belongs to a superfamily
including the bleomycin resistance protein, glyoxalase I,
and type I ring-cleaving dioxygenases; Region:
Glo_EDI_BRP_like_13; cd08354"
/db_xref="CDD:176702"
misc_feature complement(order(341495..341497,341639..341641,
341849..341851))
/locus_tag="Avi_0396"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:176702"
gene complement(341892..342611)
/gene="rph"
/locus_tag="Avi_0397"
/db_xref="GeneID:7387838"
CDS complement(341892..342611)
/gene="rph"
/locus_tag="Avi_0397"
/note="RNase PH; tRNA nucleotidyltransferase; forms
hexamers in Bacillus subtilis; phosphoroltic 3'-5'
exoribonuclease; involved in maturation of tRNA precursors
and removes terminal nucleotides near CCA acceptor arms of
mature tRNAs"
/codon_start=1
/transl_table=11
/product="ribonuclease PH"
/protein_id="YP_002548279.1"
/db_xref="GI:222147322"
/db_xref="GeneID:7387838"
/translation="MRPSGRKTDQMRKISFERNFSKHAEGSCLVKFGDTHVLCTASLE
DRTPPWLRNTGKGWVTAEYGMLPRATGERIKREASSGKQSGRTQEIQRLIGRSLRAVV
DLEALGERQISLDCDVIQADGGTRTASITGAWIALHDCLKWMESRNIIKVDRVLKDHV
AAISCGIFAAQPVIDLDYLEDSAAETDANFVMTGTGGIVEIQGTAEGKPFSQEEFLTL
LGLAQTGIAELVDLQKQAIAG"
misc_feature complement(341895..342611)
/gene="rph"
/locus_tag="Avi_0397"
/note="ribonuclease PH; Reviewed; Region: rph; PRK00173"
/db_xref="CDD:178914"
misc_feature complement(341901..342584)
/gene="rph"
/locus_tag="Avi_0397"
/note="Ribonuclease PH; Region: RNase_PH_bact; cd11362"
/db_xref="CDD:206767"
misc_feature complement(order(341943..341945,341952..341957,
341964..341969,341976..341978,341982..341999,
342003..342005,342009..342023,342249..342257,
342261..342263,342267..342269,342273..342275,
342315..342317,342324..342326,342336..342338,
342345..342350,342354..342359,342381..342386,
342393..342395,342399..342416,342420..342422,
342426..342428,342486..342488,342492..342494,
342498..342500,342504..342506,342510..342512,
342540..342554))
/gene="rph"
/locus_tag="Avi_0397"
/note="hexamer interface [polypeptide binding]; other
site"
/db_xref="CDD:206767"
misc_feature complement(order(342051..342053,342069..342071,
342234..342251,342354..342356,342417..342419))
/gene="rph"
/locus_tag="Avi_0397"
/note="active site"
/db_xref="CDD:206767"
gene 342899..343981
/gene="hrcA"
/locus_tag="Avi_0398"
/db_xref="GeneID:7387839"
CDS 342899..343981
/gene="hrcA"
/locus_tag="Avi_0398"
/note="Negative regulator of class I heat shock genes
(grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock
induction of these operons"
/codon_start=1
/transl_table=11
/product="heat-inducible transcription repressor"
/protein_id="YP_002548280.1"
/db_xref="GI:222147323"
/db_xref="GeneID:7387839"
/translation="MGKNPITAGDVSMALDERSREIFRRIVETYLESGEPLGSRNLSR
ILPMSLSPASVRNVMSDLEELGLIYSPHISAGRLPTQTGLRFFVDAFMQVGRLSEQDR
GSIERQMRSSEDQPMETLYNEASRMLSGLSRGAGLVVAAKSDPVLKHVEFIRLEPTKA
LAVLVGEFNQVENRIIELPAGITASQLTEAANFLNAHLSGQTLHEVRGQLVQLKDQVA
SELDVLSQDLVQRGLAVWSGGEGDKPTRLIVRGRANLLEGLAGVEDVDRLRLLFDDLE
RKESLIEILNLAESGPGVRIFIGSENKLFSLSGSSLIVAPYRDGDDRIVGAVGVIGPT
RLNYSRIVPMVDYTAQVMAKMTRSGH"
misc_feature 342935..343963
/gene="hrcA"
/locus_tag="Avi_0398"
/note="heat-inducible transcription repressor;
Provisional; Region: hrcA; PRK00082"
/db_xref="CDD:178849"
misc_feature 342956..343138
/gene="hrcA"
/locus_tag="Avi_0398"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 344081..344695
/gene="grpE"
/locus_tag="Avi_0399"
/db_xref="GeneID:7387840"
CDS 344081..344695
/gene="grpE"
/locus_tag="Avi_0399"
/note="with DnaK and DnaJ acts in response to hyperosmotic
and heat shock by preventing the aggregation of
stress-denatured proteins; may act as a thermosensor"
/codon_start=1
/transl_table=11
/product="heat shock protein GrpE"
/protein_id="YP_002548281.1"
/db_xref="GI:222147324"
/db_xref="GeneID:7387840"
/translation="MTDETAKNGPDAAADAQIEPQVQEETNSTAEDAGQDNNPTAALQ
AENAELRDRFLRLAAEMDNLRRRTERDVKDAKSYAVTAFARDMLAVSDNLRRAIDAVP
AEAKEEAQAGLTALIEGVEMTERAMLSTLERHGVRKIEPEGQKFDPNFHQAMFEIPNP
QVPNNTVVQVVQPGYTIGDRVLRPAMVGVAKGGPKAETAQAADA"
misc_feature 344081..344689
/gene="grpE"
/locus_tag="Avi_0399"
/note="heat shock protein GrpE; Provisional; Region:
PRK14141"
/db_xref="CDD:172630"
misc_feature 344219..344647
/gene="grpE"
/locus_tag="Avi_0399"
/note="GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of ADP,
which enables rebinding of ATP, one step in the Hsp70
reaction cycle in protein folding; Region: GrpE; cd00446"
/db_xref="CDD:73207"
misc_feature order(344225..344230,344237..344242,344249..344251,
344261..344263,344270..344275,344315..344317,
344327..344329,344336..344338,344357..344359,
344369..344371,344438..344440,344447..344449,
344480..344482)
/gene="grpE"
/locus_tag="Avi_0399"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73207"
misc_feature order(344276..344278,344522..344524,344531..344545,
344591..344593,344618..344620,344630..344632)
/gene="grpE"
/locus_tag="Avi_0399"
/note="hsp70 (ATPase domain) interactions [polypeptide
binding]; other site"
/db_xref="CDD:73207"
gene complement(344845..345309)
/gene="ptsN"
/locus_tag="Avi_0401"
/db_xref="GeneID:7388423"
CDS complement(344845..345309)
/gene="ptsN"
/locus_tag="Avi_0401"
/codon_start=1
/transl_table=11
/product="PTS IIA-like nitrogen-regulatory protein PtsN"
/protein_id="YP_002548282.1"
/db_xref="GI:222147325"
/db_xref="GeneID:7388423"
/translation="MALADLLQQDAILPVLRVNSKKQLLQELAAKASKLIGIPEREIF
DVILQREKLGSTGVGNGIAIPHGKLTSISTIQGVFARLETPIDFEALDEQPVDLVFLL
LAPEGAGADHLKALSRIARVLRDQDLVAKLRASDSATAIYTFLNQDQASNAA"
misc_feature complement(344875..345276)
/gene="ptsN"
/locus_tag="Avi_0401"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:29266"
misc_feature complement(order(345112..345114,345160..345162))
/gene="ptsN"
/locus_tag="Avi_0401"
/note="active site"
/db_xref="CDD:29266"
misc_feature complement(345112..345114)
/gene="ptsN"
/locus_tag="Avi_0401"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29266"
gene complement(345382..345948)
/locus_tag="Avi_0402"
/db_xref="GeneID:7388424"
CDS complement(345382..345948)
/locus_tag="Avi_0402"
/codon_start=1
/transl_table=11
/product="sigma-54 modulation protein"
/protein_id="YP_002548283.1"
/db_xref="GI:222147326"
/db_xref="GeneID:7388424"
/translation="MSVRVTGKHMEIGESFRQRIEVQITDAVSKYFDGGYSSQVTVTK
SASRFSADCALHLDTGINLHATGTAVDPQVAFDTAAERIEKRLRRYKRKLKDHHIPTN
NFEISYTVMDPVSEEDEDVPEDFAPTIVAESTKKVKTMSVATAVMALDMTDEPIVLFR
SPGKDELNIVYRRNDGNIGWIDSAAIKG"
misc_feature complement(345697..345942)
/locus_tag="Avi_0402"
/note="RaiA ('ribosome-associated inhibitor A', also known
as Protein Y (PY), YfiA, and SpotY, is a stress-response
protein that binds the ribosomal subunit interface and
arrests translation by interfering with aminoacyl-tRNA
binding to the ribosomal A site; Region: RaiA; cd00552"
/db_xref="CDD:29642"
misc_feature complement(order(345727..345729,345736..345738,
345742..345744,345751..345753,345757..345759,
345766..345771,345775..345780,345787..345789,
345814..345816,345826..345828,345838..345843,
345859..345861,345868..345870,345925..345927,
345931..345933,345937..345939))
/locus_tag="Avi_0402"
/note="30S subunit binding site; other site"
/db_xref="CDD:29642"
gene complement(346283..347731)
/gene="rpoN"
/locus_tag="Avi_0404"
/db_xref="GeneID:7388425"
CDS complement(346283..347731)
/gene="rpoN"
/locus_tag="Avi_0404"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma-54 factor"
/protein_id="YP_002548284.1"
/db_xref="GI:222147327"
/db_xref="GeneID:7388425"
/translation="MLEFAPNDEGTGSSEPGTDSEAPPAPAPSDTLQSDWYEHGGDGD
LNERLDANFGTAFSDDGANPKTDAPEMLGQWKSMPGAQGDGEGYDLDDFVAGKVSLRD
HLGQQLPFVLSSASDRMIALALIDQLDEAGYLRADLDEVATQMGASRDDMERILAALQ
TMEPAGLFARSLGECLAIQLRQRDRLDPAMAALIGNLDYLAKRDFASLKRLCGVDEED
LLDMLAEIRKLNPKPGAGFETDALETVVPDILVAPSLEGGWLVELNAETLPRVLVNNA
YFTEIRRSSLREGAMKTANGQSGNSKTGQSKAEGEQAFLTDCLQTANWLTRSLDQRAK
TIMKVATEIIRQQDAFLRHGVDHLRPLNLKTVADAIKMHESTVSRVTSNKYMLTPRGL
FELKYFFSVSIGSAEGGDSHSAEAVRHRIRMLIAQESPENILSDDDIVESLKNGGVEL
ARRTVAKYREAMNIASSVQRRREKRALARNPG"
misc_feature complement(346313..347602)
/gene="rpoN"
/locus_tag="Avi_0404"
/note="RNA polymerase factor sigma-54; Reviewed; Region:
PRK05932"
/db_xref="CDD:180314"
misc_feature complement(346898..347482)
/gene="rpoN"
/locus_tag="Avi_0404"
/note="Sigma-54 factor, core binding domain; Region:
Sigma54_CBD; pfam04963"
/db_xref="CDD:147239"
misc_feature complement(346316..346798)
/gene="rpoN"
/locus_tag="Avi_0404"
/note="Sigma-54, DNA binding domain; Region: Sigma54_DBD;
pfam04552"
/db_xref="CDD:113327"
gene complement(348081..348887)
/locus_tag="Avi_0405"
/db_xref="GeneID:7388426"
CDS complement(348081..348887)
/locus_tag="Avi_0405"
/codon_start=1
/transl_table=11
/product="ABC transporter ATPase"
/protein_id="YP_002548285.1"
/db_xref="GI:222147328"
/db_xref="GeneID:7388426"
/translation="MKVPGLTSKQQDANAAAPTDAAREKNRYEGTLIAHGLTKTYNTR
RVVNGASLVVRRGEAVGLLGPNGAGKTTCFYMITGLVPVDMGTIAINGNDVTSMPMYR
RSRLGVGYLPQEASIFRGLSVEDNIRAVLELHESDKTKREQKLNELLAEFNIEKLRKA
AAVSLSGGERRRLEIARALATDPTFMLLDEPFAGVDPISVSDIQNLVRHLTARGIGVL
ITDHNVRETLGLIDRAYIIHAGEVLTHGRADDIVNNPDVRRLYLGEKFSL"
misc_feature complement(348084..348800)
/locus_tag="Avi_0405"
/note="ABC-type (unclassified) transport system, ATPase
component [General function prediction only]; Region:
YhbG; COG1137"
/db_xref="CDD:31332"
misc_feature complement(348099..348794)
/locus_tag="Avi_0405"
/note="The ABC transporters belonging to the YhbG family
are similar to members of the Mj1267_LivG family, which is
involved in the transport of branched-chain amino acids.
The genes yhbG and yhbN are located in a single operon and
may function together in...; Region: ABC_YhbG; cd03218"
/db_xref="CDD:72977"
misc_feature complement(348675..348698)
/locus_tag="Avi_0405"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72977"
misc_feature complement(order(348222..348224,348318..348323,
348549..348551,348672..348680,348684..348689))
/locus_tag="Avi_0405"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72977"
misc_feature complement(348549..348560)
/locus_tag="Avi_0405"
/note="Q-loop/lid; other site"
/db_xref="CDD:72977"
misc_feature complement(348366..348395)
/locus_tag="Avi_0405"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72977"
misc_feature complement(348318..348335)
/locus_tag="Avi_0405"
/note="Walker B; other site"
/db_xref="CDD:72977"
misc_feature complement(348300..348311)
/locus_tag="Avi_0405"
/note="D-loop; other site"
/db_xref="CDD:72977"
misc_feature complement(348216..348236)
/locus_tag="Avi_0405"
/note="H-loop/switch region; other site"
/db_xref="CDD:72977"
gene complement(348902..349465)
/gene="yhbN"
/locus_tag="Avi_0406"
/db_xref="GeneID:7388427"
CDS complement(348902..349465)
/gene="yhbN"
/locus_tag="Avi_0406"
/codon_start=1
/transl_table=11
/product="cell envelope biogenesis protein YhbN"
/protein_id="YP_002548286.1"
/db_xref="GI:222147329"
/db_xref="GeneID:7388427"
/translation="MTHSHRRLSFRVACATLTAGLVATAAATGAFAQSATSNMNSLKL
SGDKPIQIESDALEVHQQENKANFNGNVKVVQGTTTMRSGTMVVKYKGQGAAVTSGDA
KIDTIDVADNVILNTETQQATADKGHFDMNTQIFTLDGDKVVLSEGGNVFVGCKLTVH
MTTGEAKLDSCGKRVQIQLDPKSKQKP"
misc_feature complement(348905..349351)
/gene="yhbN"
/locus_tag="Avi_0406"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG1934"
/db_xref="CDD:32117"
misc_feature complement(348974..349315)
/gene="yhbN"
/locus_tag="Avi_0406"
/note="OstA-like protein; Region: OstA; pfam03968"
/db_xref="CDD:190815"
gene complement(349475..350140)
/locus_tag="Avi_0408"
/db_xref="GeneID:7388428"
CDS complement(349475..350140)
/locus_tag="Avi_0408"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548287.1"
/db_xref="GI:222147330"
/db_xref="GeneID:7388428"
/translation="MLKRLDKGALEPRPPAPDTSYRKAVGHSHRVRRLRIALPALAVV
LSLGFVAVSVVRAYLPDNIKIEGAKIEDGKVVMAKPAISGRNSNGAPYSMNAVRALQD
IKNPNLITLETITATMPVNDDTSADIKAQRGTYDRSTDKMVLDRPFTIHLSSGVDAEF
QSADLDVKAGKLKTNQPVSIKTKESSIVAQSMDMTDKGQTITLTGAVRLNIAPTALQK
PGN"
misc_feature complement(349493..350140)
/locus_tag="Avi_0408"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5375"
/db_xref="CDD:34939"
gene 350609..350920
/gene="ihfB"
/locus_tag="Avi_0409"
/db_xref="GeneID:7388429"
CDS 350609..350920
/gene="ihfB"
/locus_tag="Avi_0409"
/note="This protein is one of the two subunits of
integration host factor, a specific DNA-binding protein
that functions in genetic recombination as well as in
transcriptional and translational control"
/codon_start=1
/transl_table=11
/product="integration host factor subunit beta"
/protein_id="YP_002548288.1"
/db_xref="GI:222147331"
/db_xref="GeneID:7388429"
/translation="MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALASGNRVE
LRGFGAFSVKNRPSRTGRNPRTGDTVFVEEKWVPFFKTGKELRERLNPGMDDEDDGDA
D"
misc_feature 350615..350875
/gene="ihfB"
/locus_tag="Avi_0409"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature order(350615..350617,350624..350626,350633..350635,
350645..350647,350690..350692,350699..350704,
350711..350716,350726..350740,350747..350752,
350765..350767,350831..350836,350846..350848,
350852..350854,350873..350875)
/gene="ihfB"
/locus_tag="Avi_0409"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature order(350615..350620,350687..350689,350732..350734,
350738..350740,350744..350749,350756..350758,
350768..350770,350774..350779,350783..350785,
350792..350803,350831..350833,350843..350845,
350849..350851,350858..350860)
/gene="ihfB"
/locus_tag="Avi_0409"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene 351154..351504
/locus_tag="Avi_0411"
/db_xref="GeneID:7388430"
CDS 351154..351504
/locus_tag="Avi_0411"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548289.1"
/db_xref="GI:222147332"
/db_xref="GeneID:7388430"
/translation="MVVKKIFNIVILVPLAVVLIVLCVANRQWVTLALNPFRPDDQML
SAGAPFFVFLLITFLLGALAGSFATWLTQGKHRKRARHEARAAVKWRGEADQQKKRAE
QIAASGHVSQLPSP"
gene 351808..353025
/locus_tag="Avi_0413"
/db_xref="GeneID:7388431"
CDS 351808..353025
/locus_tag="Avi_0413"
/codon_start=1
/transl_table=11
/product="SAM dependent methyltransferase"
/protein_id="YP_002548290.1"
/db_xref="GI:222147333"
/db_xref="GeneID:7388431"
/translation="MKDKSRRPPSKSAPGTASAGKGRSSSRPVASVPAKSQPDRNGGS
PYRGTGQKPVRSQTGADARETARVSAPSPRMEKDPVQDSATPANAPLALRPGPMPREN
LPLILESMGAGDFHLIDSGHGLKLEQYGPYRIVRPEAQALWPPGLAPHVWEKADAMFS
GDTDEDGMGRWRFPREALGETWPLSLLGVDFLGRFTSFRHVGVFPEQIAHWTWMKDRV
EKAKIANAERPLRVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWARENQTLSRLD
RAPIRWICDDAMKFIQREERRGSQYDIILTDPPKFGRGPNGEVWHLFEHLPLMLSLCR
EILSPKAEGLVLTAYSIRASFYAIHELMRETMRGKGGLVESGELVLREAGLDGKTPGR
ALSTSLFSRWVPK"
misc_feature 352033..353016
/locus_tag="Avi_0413"
/note="Predicted SAM-dependent methyltransferases [General
function prediction only]; Region: COG1092"
/db_xref="CDD:31289"
gene 353022..353906
/gene="trmH"
/locus_tag="Avi_0414"
/db_xref="GeneID:7388432"
CDS 353022..353906
/gene="trmH"
/locus_tag="Avi_0414"
/codon_start=1
/transl_table=11
/product="rRNA methylase"
/protein_id="YP_002548291.1"
/db_xref="GI:222147334"
/db_xref="GeneID:7388432"
/translation="MSNGFKDGASSFADKGAGGKVGQVKEVTSLANPIVKDIKALSQK
KTRDETRTFLAEGLKLVIDAVELGWSLRYLIYSKAAKGKPQVERIAARTVAHGGMVLE
VSEKVMASITRKDNPQMVAGVFDQRWKALKDVSLTEGETWVALDRVRDPGNLGTIIRT
ADAAGASGVMLIGDSTDPFAMETVRATMGSIFALPLVKTTVADFLGWKTKAGVSVVAT
HLAGAVDYRTVDYKRRPVVVLMGNEQSGLPEELASRADMLARIPQAGLADSLNLAVAT
GVMLFEARRHLLTLDEAK"
misc_feature 353100..353885
/gene="trmH"
/locus_tag="Avi_0414"
/note="rRNA methylases [Translation, ribosomal structure
and biogenesis]; Region: SpoU; COG0566"
/db_xref="CDD:30912"
misc_feature 353184..353399
/gene="trmH"
/locus_tag="Avi_0414"
/note="RNA 2'-O ribose methyltransferase substrate
binding; Region: SpoU_sub_bind; smart00967"
/db_xref="CDD:198035"
misc_feature 353448..353864
/gene="trmH"
/locus_tag="Avi_0414"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:201328"
gene 353903..354394
/gene="lspA"
/locus_tag="Avi_0415"
/db_xref="GeneID:7388433"
CDS 353903..354394
/gene="lspA"
/locus_tag="Avi_0415"
/note="lipoprotein signal peptidase; integral membrane
protein that removes signal peptides from prolipoproteins
during lipoprotein biosynthesis"
/codon_start=1
/transl_table=11
/product="lipoprotein signal peptidase"
/protein_id="YP_002548292.1"
/db_xref="GI:222147335"
/db_xref="GeneID:7388433"
/translation="MTRSAALFCRPVPAILFILSLLILDQAIKYAVEVSLPMHELVPV
VPMLGLFRTHNLGVAFSMLSHLDAWVIVVMRLAIVAFVAWLWRQTSRDHQFAHLGYCL
IIAGAFGNIIDRFTYGYVVDYILFHTETWSFAVFNLADSLITIGAGFILLEELLVLRR
SKG"
misc_feature 353906..354391
/gene="lspA"
/locus_tag="Avi_0415"
/note="lipoprotein signal peptidase; Provisional; Region:
PRK14795"
/db_xref="CDD:173256"
misc_feature 353948..354358
/gene="lspA"
/locus_tag="Avi_0415"
/note="lipoprotein signal peptidase; Provisional; Region:
PRK14787"
/db_xref="CDD:173248"
gene 354824..356458
/gene="barA"
/locus_tag="Avi_0417"
/db_xref="GeneID:7388434"
CDS 354824..356458
/gene="barA"
/locus_tag="Avi_0417"
/codon_start=1
/transl_table=11
/product="two component sensor kinase/response regulator
hybrid"
/protein_id="YP_002548293.1"
/db_xref="GI:222147336"
/db_xref="GeneID:7388434"
/translation="MLSKTQSPVLPSIASAELVRTRLLATVSHEMRTPLNGILGMSHL
LGRTDLSPEQRNYLSGIVQAGESLQQLIADLLDYTTLETGHFELHNQRVSPRRLIEGV
VEMLSPRAHAKGIEIAATTQSGVPEEVDIDVARLRQVLFNVIGNAVKFTVEGGVLVSA
SCIGDELVVRVRDTGPGMTEEERTRLFVEFSQGGDPVQRSGGTGLGLFISQRLMMALG
GSLSIIETVRGRGTSFEIRLPTKAIAQDRTVSQRQSLLSGSSVLLLAPDGPAAEGASM
TIRTLGGFCHWAKKTEEALDLLDQVERQDATLTDLIVDHRCISDYDANLARRLSGLGK
IRRIYLVNPEERPVRPLTGFDAWLIRPLREQTLSDVLRGLMSGVDAAHVDVQDTDVSH
AGVLLSGEGMEPGKQVPDVLNVLVGEDDFVNATLLRAVLQKAGHMVGVVNDFDALRRE
VALEEAVKLDLIITDLGMPGGDGSSVLRYVRMIEQLKRRPRCPILVLTGDLRDAARAE
ALTSGADLVLQKPVNPERLLNEIASLMKTHRTRLYG"
misc_feature 354881..355060
/gene="barA"
/locus_tag="Avi_0417"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(354890..354892,354902..354904,354914..354916,
354923..354925,354935..354937,354944..354946,
354992..354994,355004..355006,355013..355015,
355025..355027,355034..355036,355046..355048)
/gene="barA"
/locus_tag="Avi_0417"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 354908..354910
/gene="barA"
/locus_tag="Avi_0417"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 355229..355537
/gene="barA"
/locus_tag="Avi_0417"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(355247..355249,355259..355261,355268..355270,
355334..355336,355340..355342,355346..355348,
355352..355357,355433..355444,355493..355495,
355499..355501,355514..355519,355523..355525)
/gene="barA"
/locus_tag="Avi_0417"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 355259..355261
/gene="barA"
/locus_tag="Avi_0417"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(355346..355348,355352..355354,355433..355435,
355439..355441)
/gene="barA"
/locus_tag="Avi_0417"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 356063..356416
/gene="barA"
/locus_tag="Avi_0417"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 356066..356428
/gene="barA"
/locus_tag="Avi_0417"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(356075..356080,356216..356218,356240..356242,
356315..356317,356372..356374,356381..356386)
/gene="barA"
/locus_tag="Avi_0417"
/note="active site"
/db_xref="CDD:29071"
misc_feature 356216..356218
/gene="barA"
/locus_tag="Avi_0417"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(356225..356230,356234..356242)
/gene="barA"
/locus_tag="Avi_0417"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 356381..356389
/gene="barA"
/locus_tag="Avi_0417"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 356612..357487
/locus_tag="Avi_0418"
/db_xref="GeneID:7388435"
CDS 356612..357487
/locus_tag="Avi_0418"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548294.1"
/db_xref="GI:222147337"
/db_xref="GeneID:7388435"
/translation="MTVELLDRAVTPETERSSGAVSGPAGDVLGRIGTLETRLARNAR
EIDAAQAVRYRVFVEEMNAMLPPDAMRQKRDIDAFDEICDHLLVLDHAIEGDPEDQIV
GTYRLLRHEVALANFGFYSASEFALDDLIARHPDKRFMELGRSCVLPNYRTKRTVELL
WQGNWAYALRHNMSAMIGCASFPGVQPEQHALALSFLAQNAEARGEWAVRARPELFCP
MDLMPSEIVNARKALSAMPPLVKGYLRLGAMIGTGAVVDHAFNTTDVLIVLPITSISD
RYVNYYGADAGRFAS"
misc_feature 356666..357484
/locus_tag="Avi_0418"
/note="Putative hemolysin [General function prediction
only]; Region: COG3176"
/db_xref="CDD:32989"
gene complement(357534..357869)
/locus_tag="Avi_0421"
/db_xref="GeneID:7388436"
CDS complement(357534..357869)
/locus_tag="Avi_0421"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548295.1"
/db_xref="GI:222147338"
/db_xref="GeneID:7388436"
/translation="MPIAENSLAFEGLIQHGKGCNHEDYLEVFLKVRIFGCLQLRREQ
RSTSASRFGGSLATAIGRPRHPARATNGNAKRSTAGKIYSVLRFSKQTPSTGIAMFNL
NRTVSSFLY"
gene 357905..358849
/locus_tag="Avi_0422"
/db_xref="GeneID:7388437"
CDS 357905..358849
/locus_tag="Avi_0422"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002548296.1"
/db_xref="GI:222147339"
/db_xref="GeneID:7388437"
/translation="MSKLNLVHLNGLRAVEAVGRLGSLQAAASELGVSIGAISQQVIK
AEQQLQLQLFERTSRGMVPTDVAEPVLDRLSAGFRHLSGAVALALKSDDTVLTISVAP
VFAARWLVHRIGAFSERFPTIRLRMEASDRLIDPSSSDVDLCIRVGRGDWPGVRAELL
LEQKVFPVCTPAMAKRLQSPADLLELPIVEDGRAMFSWDVWLAAAGLPGRSVCTRHVF
SEASLCLDAALAGQGVLLAWQTIASQQLQQGQLVAPFGPAVPTGLAHYFVSPEGARRN
DKVDAFKRWLRDELHEDMTRLAKAIPFLGGPFLKGECG"
misc_feature 357929..358771
/locus_tag="Avi_0422"
/note="DNA-binding transcriptional activator GcvA;
Provisional; Region: PRK11139"
/db_xref="CDD:182990"
misc_feature 357929..358108
/locus_tag="Avi_0422"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 358187..358762
/locus_tag="Avi_0422"
/note="The C-terminal substrate domain of LysR-type GcdR,
TrPI, HvR and beta-lactamase regulators, and that of other
closely related homologs; contains the type 2 periplasmic
binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like;
cd08432"
/db_xref="CDD:176123"
misc_feature order(358187..358210,358214..358267,358271..358291)
/locus_tag="Avi_0422"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176123"
misc_feature order(358205..358210,358214..358216,358559..358567,
358625..358627)
/locus_tag="Avi_0422"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:176123"
gene 359072..361723
/gene="mutS"
/locus_tag="Avi_0423"
/db_xref="GeneID:7388438"
CDS 359072..361723
/gene="mutS"
/locus_tag="Avi_0423"
/note="This protein performs the mismatch recognition step
during the DNA repair process"
/codon_start=1
/transl_table=11
/product="DNA mismatch repair protein MutS"
/protein_id="YP_002548297.1"
/db_xref="GI:222147340"
/db_xref="GeneID:7388438"
/translation="MMEQYIEIKANNPGSLLFYRMGDFYELFFEDAVEASRALGITLT
KRGQHLGQDIPMCGVPVHASDDYLQKLITLGFRVAVCEQVEDPAEAKKRGSKSVVKRD
VVRLVTPGTLTEEKLLSPSETNYLMALARVRGSGDELALAWIDISTGVFRLAETNPTR
LLADIFRIDPREVIVAETLMQDPDLKPAFDVLGRVVVPQPSVLFDSASAEGRITRYFN
VKTLDGFGGFSRPEMAAASAAIAYVEKTQMSERPPLGLPERQSSSSTLFIDAATRANL
ELVKTLSGQKQGSLLNTIDRTVTGGGARLMAERLMSPLTEVVAIAQRQDAVAYLLTDG
FLCERLRDLLKRAPDMPRALSRLALDRGGPRDLAAIRYGLSTSGDVAGLLRGAVLPDE
LASALTDLEMLSPSLENLLASQLAEDLPLLKRDGGFLREGADEGLDEVRALRDQSRRV
IAGLQLQYAEETGVKSLKIKHNNVLGYFIEVTAGNAGPLIEGEAKARFIHRQSMANAM
RFTTTELADLESRIANAAGQALEIELAAFERMRQAVVTEAEAIKKAARALAVIDVAAG
LAVLAEEQGYCRPLVDDSRMFSIVAGRHPVVEQALRKQAASPFIANNCDLSPVGDQKH
GAIWMLTGPNMGGKSTFLRQNALIAILAQMGSFVPAGSAHIGIVDRLFSRVGASDDLA
RGRSTFMVEMVETAAILNQAGERSLVILDEIGRGTATFDGLSIAWATVEHLHEVNRCR
SLFATHFHELTALSEKLVRLSNVTMKVKEWHGDVIFLHEVGAGAADRSYGIQVARLAG
LPGMVVERARAVLSQLEDADRKNPASQLIDDLPLFQVSQRRESRTGTGAQVSAVEEAL
RSLNLDDLTPRQAMDALYDLKTTLAKS"
misc_feature 359072..361717
/gene="mutS"
/locus_tag="Avi_0423"
/note="DNA mismatch repair protein MutS; Provisional;
Region: PRK05399"
/db_xref="CDD:180056"
misc_feature 359072..359416
/gene="mutS"
/locus_tag="Avi_0423"
/note="MutS domain I; Region: MutS_I; pfam01624"
/db_xref="CDD:144998"
misc_feature 359441..359833
/gene="mutS"
/locus_tag="Avi_0423"
/note="MutS domain II; Region: MutS_II; pfam05188"
/db_xref="CDD:147397"
misc_feature 360365..360646
/gene="mutS"
/locus_tag="Avi_0423"
/note="MutS family domain IV; Region: MutS_IV; pfam05190"
/db_xref="CDD:203196"
misc_feature 360836..361504
/gene="mutS"
/locus_tag="Avi_0423"
/note="MutS1 homolog in eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired and
unpaired bases embedded in duplex DNA and activating endo-
and exonucleases to remove the mismatch. Members of the
MutS family possess C-terminal...; Region: ABC_MutS1;
cd03284"
/db_xref="CDD:73043"
misc_feature 360965..360988
/gene="mutS"
/locus_tag="Avi_0423"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73043"
misc_feature order(360974..360979,360983..360991,361097..361099,
361202..361207,361307..361309)
/gene="mutS"
/locus_tag="Avi_0423"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73043"
misc_feature 361088..361099
/gene="mutS"
/locus_tag="Avi_0423"
/note="Q-loop/lid; other site"
/db_xref="CDD:73043"
misc_feature 361112..361153
/gene="mutS"
/locus_tag="Avi_0423"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73043"
misc_feature 361190..361207
/gene="mutS"
/locus_tag="Avi_0423"
/note="Walker B; other site"
/db_xref="CDD:73043"
misc_feature 361214..361225
/gene="mutS"
/locus_tag="Avi_0423"
/note="D-loop; other site"
/db_xref="CDD:73043"
misc_feature 361295..361315
/gene="mutS"
/locus_tag="Avi_0423"
/note="H-loop/switch region; other site"
/db_xref="CDD:73043"
gene 361892..364717
/gene="glnD"
/locus_tag="Avi_0424"
/db_xref="GeneID:7388439"
CDS 361892..364717
/gene="glnD"
/locus_tag="Avi_0424"
/note="catalyzes the uridylylation or deuridylylation of
the PII nitrogen regulatory protein"
/codon_start=1
/transl_table=11
/product="PII uridylyl-transferase"
/protein_id="YP_002548298.1"
/db_xref="GI:222147341"
/db_xref="GeneID:7388439"
/translation="MAKHDLSDATLPDFKALEAECMSIVLQNGKVPETRAAILPLLKK
ASIDGREAALRHLTTNGSGLECAGMISNLQDNLITLVHRMVTQAVYPTTQQEFAVAAV
GGYGRSTLAPGSDIDLLFLLSVKAGADARKAVEFLLYILWDLGFKVGHATRLVEECIR
LSRTDMTIRTAILETRFICGEALLVGELQKRFDAEVVEKTAPEFIAAKLAERDERHRK
AGDTRYLVEPNVKEGKGGLRDLHTLFWIAKYYYRISDPADLVKLGVLSRQEWRMFQKS
DDFLWAVRCHMHFATGKPEERLSFDLQPEIARNLGYNARPGLSEVERFMKHYFHVAKN
VGDLTRIVCASLEDKQAKAAPGLTAAIGRFAHRPRRIPGTPEFIEDRGRIALSGPDIF
KRDPINIMRFFHVADLHGLEFHPDALKAITRCLPLIDHDFRENEEANRLFLSILTSKR
DPALMLTRMNEAGVLGKFIPDFGRIVSMMQFNMYHHYTVDEHLIRSVGILAEVDQGQH
ADIHPLAVKLMPNIEERTVLFVAVLLHDIAKGRQEDHSIAGAKVARRLCPRLGLNDKQ
TELVVWLIDQHLLMSMVAQTRDLHDRKTITDFAEKVQSLDRLRMLLVLTVCDIRAVGP
GVWNGWKGQLLRTLYYETELLLSGGFSESPRKERAKQAAEQLAEALSDWSQKDQKTYT
KLHYQPYLLTVPLEDQVRHAHFIRQADKADQALATMVRTHSFHAITEITVLAPDHPRL
LSIIAGACAAAGANIADAQIFTTSDGRALDTILINREFPIDEDEMRRANTISKMIEDV
LAGKKRLPEVIATRTKGRKRNKTFTVKPHVTISNSLSNKFTVIEIECLDRIGLLAEVT
AVLADLSLDIHSARITTFGEKVIDTFYVIDLVGQKITNENRQGSISVRLKAVMSEQPD
ELREQMPSGIIAPAATKSPAAEKKARV"
misc_feature 361892..364669
/gene="glnD"
/locus_tag="Avi_0424"
/note="PII uridylyl-transferase; Provisional; Region:
PRK05092"
/db_xref="CDD:179932"
misc_feature 362033..362473
/gene="glnD"
/locus_tag="Avi_0424"
/note="Nucleotidyltransferase (NT) domain of Escherichia
coli adenylyltransferase (GlnE), Escherichia coli uridylyl
transferase (GlnD), and similar proteins; Region:
NT_GlnE_GlnD_like; cd05401"
/db_xref="CDD:143391"
misc_feature order(362234..362236,362240..362242,362318..362320)
/gene="glnD"
/locus_tag="Avi_0424"
/note="metal binding triad; metal-binding site"
/db_xref="CDD:143391"
misc_feature 362501..362920
/gene="glnD"
/locus_tag="Avi_0424"
/note="GlnD PII-uridylyltransferase; Region:
GlnD_UR_UTase; pfam08335"
/db_xref="CDD:149407"
misc_feature 363419..363700
/gene="glnD"
/locus_tag="Avi_0424"
/note="HD domain; Region: HD; pfam01966"
/db_xref="CDD:202067"
misc_feature 364073..364288
/gene="glnD"
/locus_tag="Avi_0424"
/note="ACT domains are commonly involved in specifically
binding an amino acid or other small ligand leading to
regulation of the enzyme; Region: ACT; cl09141"
/db_xref="CDD:208988"
misc_feature 364406..364618
/gene="glnD"
/locus_tag="Avi_0424"
/note="C-terminal ACT domains of the bacterial
signal-transducing uridylyltransferase /uridylyl-removing
(UUR) enzyme, GlnD and related domains; Region:
ACT_ACR-UUR-like_2; cd04899"
/db_xref="CDD:153171"
gene 364719..366317
/gene="mviN"
/locus_tag="Avi_0425"
/db_xref="GeneID:7388440"
CDS 364719..366317
/gene="mviN"
/locus_tag="Avi_0425"
/codon_start=1
/transl_table=11
/product="integral membrane protein MviN"
/protein_id="YP_002548299.1"
/db_xref="GI:222147342"
/db_xref="GeneID:7388440"
/translation="MSLVKKFITVGGATLGSRLFGFARETLMAAALGTGPMADVFYAA
FRFPNLFRRLFAEGAFNAAFVPLFSKEIEANGLDGAKRFSEEVFGVLFTVLLLITIAM
ELSMPLLVRFVIAPGFADDAEKFSLTVRLAVVMFPYLMCMSLTAMLSGMLNSLHHFFA
AAVAPIFLNLVMISALFYALYHGVEPVVTAWYLSWSVLVAGILQLLVVYIGVRHAGIR
LGFKWPKITPNVKRLLVLAVPAAVTGGITQINQLIGQAIASSKDGAIAALQYADRIYQ
LPLGVVGVAVGVVLLPELARALKSDHQREASTIQNRSIEFVLFLTLPAAVGLWVLSDD
IIRVLYERGAFTAHNTAIVAAILAYYGLGLPGFVMIKALQPGFYAREDTKTPMRFTGI
SVVVNSALAISLFPLLQERGIAIAEATAGAINTVLLFTMLVRRGHLQVEWALVSRALR
LLLAALAMGAALMALSGFFAPYIGTGSPFLHKVLVLFIQIGLAMLIYFSLAFLIGGAD
LGMLRRNLKRKARATPSEAADDAE"
misc_feature 364719..366263
/gene="mviN"
/locus_tag="Avi_0425"
/note="Uncharacterized membrane protein, putative
virulence factor [General function prediction only];
Region: MviN; COG0728"
/db_xref="CDD:31072"
gene 366304..366708
/locus_tag="Avi_0426"
/db_xref="GeneID:7388441"
CDS 366304..366708
/locus_tag="Avi_0426"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548300.1"
/db_xref="GI:222147343"
/db_xref="GeneID:7388441"
/translation="MTQNRPVKRIATVTLVVDDYDRALAFYCGKLGFACKADIDLGDG
KRWVVVSPTEDGAGLLLAQADGEKQLATIGNQTGGRVAFFLETDDFARDHAAFIADGI
VFQEEPRYELYGTVAVFEDLYGNLWDLIEPKL"
misc_feature 366328..366690
/locus_tag="Avi_0426"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature 366337..366696
/locus_tag="Avi_0426"
/note="This conserved domain belongs to a superfamily
including the bleomycin resistance protein, glyoxalase I,
and type I ring-cleaving dioxygenases; Region:
Glo_EDI_BRP_like_16; cd07263"
/db_xref="CDD:211353"
gene 366815..367879
/gene="trpS"
/locus_tag="Avi_0427"
/db_xref="GeneID:7388442"
CDS 366815..367879
/gene="trpS"
/locus_tag="Avi_0427"
/note="catalyzes a two-step reaction, first charging a
tryptophan molecule by linking its carboxyl group to the
alpha-phosphate of ATP, followed by transfer of the
aminoacyl-adenylate to its tRNA"
/codon_start=1
/transl_table=11
/product="tryptophanyl-tRNA synthetase"
/protein_id="YP_002548301.1"
/db_xref="GI:222147344"
/db_xref="GeneID:7388442"
/translation="MSEFQPLVFSGVQPTGNLHLGNYLGAIRKFVALQENNDCMYCVV
DLHALTAQLVHEDMRGQIRSITAAFLAAGIDPVKHIVFNQSQVPQHAELAWIFNCVAR
IGWMNRMTQFKDKAGKDREQASLGLFAYPSLMAADILVYRATHVPVGDDQKQHLELTR
DIAMKFNLDFAQQIRPTGLGIDITVGNEPVHAYFPMVEPLIDGPAPRVMSLKDGTKKM
SKSDPSDLSRINLMDDAEAIAKKIRKAKTDPDALPSETDGLAGRPEADNLVGIYAALA
DKTKAEVLAEFGGQQFSVFKPALIELAVEVLSPITGEMRRLMGDPAHIDAVLRDGGER
ARVRAEKTMTEIRDIIGFVR"
misc_feature 366827..367867
/gene="trpS"
/locus_tag="Avi_0427"
/note="tryptophanyl-tRNA synthetase II; Reviewed; Region:
PRK12282"
/db_xref="CDD:183400"
misc_feature 366836..367729
/gene="trpS"
/locus_tag="Avi_0427"
/note="catalytic core domain of tryptophanyl-tRNA
synthetase; Region: TrpRS_core; cd00806"
/db_xref="CDD:173903"
misc_feature order(366839..366853,366869..366871,366875..366880,
366887..366889,366938..366940,366953..366955,
367064..367066,367202..367204,367214..367216,
367223..367225,367250..367252,367256..367261,
367265..367270,367277..367279,367433..367435,
367463..367468,367472..367474)
/gene="trpS"
/locus_tag="Avi_0427"
/note="active site"
/db_xref="CDD:173903"
misc_feature 366869..366880
/gene="trpS"
/locus_tag="Avi_0427"
/note="HIGH motif; other site"
/db_xref="CDD:173903"
misc_feature order(366950..366952,366959..366964,367082..367087,
367091..367099,367106..367111,367115..367126,
367130..367135,367190..367192,367196..367201,
367208..367213)
/gene="trpS"
/locus_tag="Avi_0427"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:173903"
misc_feature 367463..367477
/gene="trpS"
/locus_tag="Avi_0427"
/note="KMSKS motif; other site"
/db_xref="CDD:173903"
misc_feature <367700..367867
/gene="trpS"
/locus_tag="Avi_0427"
/note="nucleotidyl transferase superfamily; Region:
nt_trans; cl00015"
/db_xref="CDD:212170"
gene 367969..368460
/locus_tag="Avi_0429"
/db_xref="GeneID:7388443"
CDS 367969..368460
/locus_tag="Avi_0429"
/codon_start=1
/transl_table=11
/product="Universal stress protein"
/protein_id="YP_002548302.1"
/db_xref="GI:222147345"
/db_xref="GeneID:7388443"
/translation="MVSKRLSRLDGHRRKFLTVIDDTPECSRAVHYAGRRAKNSNGGL
VLLYVIPEGDFQQWLGVEEIMRAEAREAADAVMAKSAQTVRETIGLEPEIVIREGSAA
EQIQAVIEEDRDIAILVLAAGSAKDGPGPLVSMIAGRAQAFPIPVTVLPDTLSNEEID
ALC"
misc_feature 368011..368418
/locus_tag="Avi_0429"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:30165"
misc_feature order(368023..368031,368113..368115,368326..368331,
368335..368337,368350..368352,368380..368385)
/locus_tag="Avi_0429"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30165"
gene 368624..369184
/locus_tag="Avi_0430"
/db_xref="GeneID:7388444"
CDS 368624..369184
/locus_tag="Avi_0430"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548303.1"
/db_xref="GI:222147346"
/db_xref="GeneID:7388444"
/translation="MFIQTESTPNPATLKFLPGKVVMDNGTAEFRDREAAMASPLAEK
LFAIPGVTSVFFGYDFVTVTKDTAEWPHLKPAILGSIMEHFMSGAPIMGSAVAGDEAS
DEEFFNEGDETIVATIKELLETRVRPAVAQDGGDITFRGFRDGKVFLNMKGSCAGCPS
STATLKHGVQNLLRHFIPEVQEVEAV"
misc_feature 368630..368887
/locus_tag="Avi_0430"
/note="Scaffold protein Nfu/NifU N terminal; Region:
Nfu_N; pfam08712"
/db_xref="CDD:204038"
misc_feature 368936..369181
/locus_tag="Avi_0430"
/note="Thioredoxin-like proteins and domains
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0694"
/db_xref="CDD:31038"
gene 369264..369953
/locus_tag="Avi_0432"
/db_xref="GeneID:7388445"
CDS 369264..369953
/locus_tag="Avi_0432"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548304.1"
/db_xref="GI:222147347"
/db_xref="GeneID:7388445"
/translation="MILLAIDTAGVDCAVGLYDSDLDRMLAARSETIGRGHAEKLMGM
IDAVLNEASLALPSVERVAVTIGPGSFTGIRVGLSAARGLALALGVDIVGISTLAVLA
EAERRRGGVVAVLAAMDAKRDEVYVQGFSPDAVALDDARLLSVDEFRAMAAELARHGA
VRVTGSACWLLEKDVAGESEEAATVEADHFPMEDIARLGAVAQASGKPKPLYLRGPDV
KPQAGFAVARA"
misc_feature 369270..369905
/locus_tag="Avi_0432"
/note="universal bacterial protein YeaZ; Region:
bact_YeaZ; TIGR03725"
/db_xref="CDD:211869"
misc_feature 369354..>369644
/locus_tag="Avi_0432"
/note="Glycoprotease family; Region: Peptidase_M22;
pfam00814"
/db_xref="CDD:201456"
gene 370126..370623
/locus_tag="Avi_0433"
/db_xref="GeneID:7388446"
CDS 370126..370623
/locus_tag="Avi_0433"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_002548305.1"
/db_xref="GI:222147348"
/db_xref="GeneID:7388446"
/translation="MLETIFARKAEFEIVAMELDDCHDVSELHGQRFSQPWNDGAFES
LLLQPNVFGFVIRQTNTLMFKPQLSGFVLAREAAGEAEILTIAVHEKGARNGLGWRLM
QGAMRESRVRGGEIMFLEVDDGNHPAINLYRKLGFEKAGERPAYYADANGRRSAALVM
RRDLR"
misc_feature 370186..370605
/locus_tag="Avi_0433"
/note="ribosomal-protein-alanine acetyltransferase;
Region: rimI; TIGR01575"
/db_xref="CDD:162430"
misc_feature 370333..370539
/locus_tag="Avi_0433"
/note="Acetyltransferase (GNAT) family; Region:
Acetyltransf_1; pfam00583"
/db_xref="CDD:201324"
misc_feature order(370381..370389,370417..370422)
/locus_tag="Avi_0433"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 370682..371089
/gene="fur"
/locus_tag="Avi_0435"
/db_xref="GeneID:7388447"
CDS 370682..371089
/gene="fur"
/locus_tag="Avi_0435"
/codon_start=1
/transl_table=11
/product="ferric uptake regulator"
/protein_id="YP_002548306.1"
/db_xref="GI:222147349"
/db_xref="GeneID:7388447"
/translation="MEELCAERGMRMTEQRRIIARILEGCDDHPDVEELYRRSSAIDA
KISISTVYRTVKLFEDAGIIARHDFRDGRSRYETVPEEHHDHLIDLKTGVVIEFRSPE
IEALQERIAREHGFRLVDHRLELYGVPLAKDEP"
misc_feature 370724..371065
/gene="fur"
/locus_tag="Avi_0435"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature order(370766..370768,370910..370912,370931..370933,
370937..370939,370970..370972)
/gene="fur"
/locus_tag="Avi_0435"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature 370820..370864
/gene="fur"
/locus_tag="Avi_0435"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature order(370928..370930,370934..370936,370991..370993,
371042..371044)
/gene="fur"
/locus_tag="Avi_0435"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature order(370943..370951,370997..371002,371027..371035,
371039..371065)
/gene="fur"
/locus_tag="Avi_0435"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature order(370946..370948,370955..370957)
/gene="fur"
/locus_tag="Avi_0435"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene 371121..371918
/gene="plsC"
/locus_tag="Avi_0436"
/db_xref="GeneID:7388448"
CDS 371121..371918
/gene="plsC"
/locus_tag="Avi_0436"
/codon_start=1
/transl_table=11
/product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
/protein_id="YP_002548307.1"
/db_xref="GI:222147350"
/db_xref="GeneID:7388448"
/translation="MIITIRTVFMLALLVAVTLIMLPLQLFGLAFDLKIRRLLPRYWH
RIACLVLGIRVRVHGLPERQRPLMLAVNHCSWTDILVLSSIADVVFIAKMEVSEWPIF
GTLAKLQKSIFIRREEKRSSGEQVNDIAARMADGEIVVLFPEGTTSDGNRLLPVKSSL
FGAAAMAVPLAPEGVVYVQPVAIAYTGIHGMPMGRFHRPLVSWPGDVTLGPHLAGLLK
VAAVDVDVCFGAPVAYTKDSNRKRVSATVEAEIRRMLLSKLLGRTIE"
misc_feature 371121..>371375
/gene="plsC"
/locus_tag="Avi_0436"
/note="N-Acyltransferase superfamily: Various enyzmes that
characteristicly catalyze the transfer of an acyl group to
a substrate; Region: NAT_SF; cl00357"
/db_xref="CDD:213096"
misc_feature 371133..371780
/gene="plsC"
/locus_tag="Avi_0436"
/note="1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism]; Region: PlsC; COG0204"
/db_xref="CDD:30553"
misc_feature 371253..371876
/gene="plsC"
/locus_tag="Avi_0436"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: AGPAT-like; Region:
LPLAT_AGPAT-like; cd07989"
/db_xref="CDD:153251"
misc_feature order(371337..371339,371346..371348,371352..371354,
371394..371405,371553..371561)
/gene="plsC"
/locus_tag="Avi_0436"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153251"
gene 372009..373442
/gene="miaB"
/locus_tag="Avi_0437"
/db_xref="GeneID:7388449"
CDS 372009..373442
/gene="miaB"
/locus_tag="Avi_0437"
/note="catalyzes the formation of
2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at
position 37 in tRNAs that read codons beginning with
uridine from N6-(dimethylallyl)adenosine (i(6)A)"
/codon_start=1
/transl_table=11
/product="(dimethylallyl)adenosine tRNA
methylthiotransferase"
/protein_id="YP_002548308.1"
/db_xref="GI:222147351"
/db_xref="GeneID:7388449"
/translation="MTQEISSLSASVEPVSAMVEHASAQQKPAPQKKVFIKTYGCQMN
VYDSSRMADALVAEGYQSTEDMEEASLVLLNTCHIREKAADKVYSALGRLREMKKIRA
ARGEEFMIGVAGCVAQAEGEEIVRREPGVDVVVGPQTYHRLPQALRRARGGERVVDTD
YAVEDKFEHLPDPTKIAGKRRMITAFLTVQEGCDKFCTFCVVPYTRGSEVSRPLAQLL
GEAQRLVESGVREITLLGQNVNAWHGKGPDGREMGLGDLLYKLAEIPGLARLRYTTSH
PRDMDERLIEAHRDLRMLMPYLHLPVQSGSDRILKAMNRRHKAADYIALVDRIREARP
DIAISGDFIVGFPGETDADFEDTMKLVERIGYAQAFSFKYSPRPGTPGADMPDHVAED
VKTERLARLQELLLKQQHDFARSLVGQTMDLLLEKPGRMPGQIIGRSPWLQSVNVDAK
PSQIGDIIQVRITDIGPNSLFAEVAES"
misc_feature 372093..373439
/gene="miaB"
/locus_tag="Avi_0437"
/note="(dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional; Region: PRK14325"
/db_xref="CDD:184622"
misc_feature 372105..372416
/gene="miaB"
/locus_tag="Avi_0437"
/note="Uncharacterized protein family UPF0004; Region:
UPF0004; pfam00919"
/db_xref="CDD:201505"
misc_feature 372582..373184
/gene="miaB"
/locus_tag="Avi_0437"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(372585..372587,372591..372593,372597..372599,
372603..372611,372711..372713,372744..372749,
372825..372833,372903..372905,373035..373037,
373128..373130)
/gene="miaB"
/locus_tag="Avi_0437"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 373248..373430
/gene="miaB"
/locus_tag="Avi_0437"
/note="TRAM domain; Region: TRAM; pfam01938"
/db_xref="CDD:110897"
gene 373484..374557
/gene="phoH"
/locus_tag="Avi_0438"
/db_xref="GeneID:7388450"
CDS 373484..374557
/gene="phoH"
/locus_tag="Avi_0438"
/codon_start=1
/transl_table=11
/product="phosphate starvation inducible protein"
/protein_id="YP_002548309.1"
/db_xref="GI:222147352"
/db_xref="GeneID:7388450"
/translation="MNATEVVTSPSRNTKTAATDANHFILTFENNRHASELFGQFEQN
LKLLEQRLNIKASARGNSVSISGDIMATNQARRALDFLYARLQSGGSVEASDVEGAIR
MAVAADDQLTLPTLERKAKLSMAQISTRKKTIVARTPTQDAYMRALERSELVFGTGPA
GTGKTYLAVAQAAQLLERGAVDKIILSRPAVEAGERLGFLPGDMKEKVDPYLRPLYDA
LYDMMLGDKVERAITAGVIEIAPLAFMRGRTLANAAIILDEAQNTTSMQMKMFLTRLG
ENSRMIITGDPSQVDLPRGVKSGLVEALDILAGVEGVSFVRFKDVDVVRHPLVGRIVR
AYDAQYAQPEPHYTQPLEGEKPE"
misc_feature 373508..374545
/gene="phoH"
/locus_tag="Avi_0438"
/note="Phosphate starvation-inducible protein PhoH,
predicted ATPase [Signal transduction mechanisms]; Region:
PhoH; COG1702"
/db_xref="CDD:31888"
misc_feature 373880..374494
/gene="phoH"
/locus_tag="Avi_0438"
/note="PhoH-like protein; Region: PhoH; pfam02562"
/db_xref="CDD:190347"
gene 374594..375097
/locus_tag="Avi_0440"
/db_xref="GeneID:7388451"
CDS 374594..375097
/locus_tag="Avi_0440"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548310.1"
/db_xref="GI:222147353"
/db_xref="GeneID:7388451"
/translation="MKKLDVQIAIEADGWPDEAELEALSTRILDHAADFIAAEGQPFA
PMPAEVSLVFTGDTEIQAINSEWRGQDKPTNVLSFPAYPIEPGDKPGPMLGDIVIARQ
TVEREAAELEKTITDHLTHLMVHGFLHLFGYDHMTEDEAEEMEGLETRILAGLGLSDP
YAGQVPV"
misc_feature 374606..375085
/locus_tag="Avi_0440"
/note="metal-binding heat shock protein; Provisional;
Region: PRK00016"
/db_xref="CDD:178796"
gene 375110..376147
/locus_tag="Avi_0441"
/db_xref="GeneID:7388452"
CDS 375110..376147
/locus_tag="Avi_0441"
/codon_start=1
/transl_table=11
/product="hemolysin"
/protein_id="YP_002548311.1"
/db_xref="GI:222147354"
/db_xref="GeneID:7388452"
/translation="MSDFSTRSASEATKEQDGSSSEEGSSPQRSSAAHKPQSSFWARA
ARILKPAGGNLREDIADALMSDRAAEEAFSAEERAMLHNILRFREVRVEDVMVPRSDI
HAVDVETSIGELMTLFQQTGHSRMPVYCDTLDDPRGMVHIRDLLSYITLKALNGNGLD
LACVDLGVTLEEAGIIRSILFVPPSMQASDLLARMQAARTQMALVIDEYGGTDGLVSH
EDIVEMVVGDIEDEHDKEEALVTRVSQDVYLADARIELEEIAEVIGPDFDISAEIDEV
DTLGGLLSTAIGRVPQRGEVVQAVAGFELHILDADPRRVKKVRITRMAPIAKRLQEGA
DLQTVGSGQGK"
misc_feature 375191..376081
/locus_tag="Avi_0441"
/note="Putative Mg2+ and Co2+ transporter CorC [Inorganic
ion transport and metabolism]; Region: CorC; COG4535"
/db_xref="CDD:34182"
misc_feature 375407..375778
/locus_tag="Avi_0441"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:73090"
misc_feature 375830..376075
/locus_tag="Avi_0441"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:198159"
gene 376377..377963
/gene="lnt"
/locus_tag="Avi_0442"
/db_xref="GeneID:7388453"
CDS 376377..377963
/gene="lnt"
/locus_tag="Avi_0442"
/note="Transfers the fatty acyl group on membrane
lipoproteins"
/codon_start=1
/transl_table=11
/product="apolipoprotein N-acyltransferase"
/protein_id="YP_002548312.1"
/db_xref="GI:222147355"
/db_xref="GeneID:7388453"
/translation="MERLAARIMLLAGWRRALLAIASGAVGALALPPVGFFAALFFSF
SMLVWLLDGVSGNPDRSWSRGLRSAFWIGWLFGFGYFVAGLWWLGNALMVEADEFAWA
LPLAVLGLPAVLAVFYGLACLAARLLWSEGLGRIAALAAMFGITEWLRSFIATGFPWN
AIGYGAMPIPLMMQSAAVLGLFGVSALAVFVFAAPALLGTRRGAKLGLALAGILFCGH
LGYGAYRLSLPEPDGRKVTVRLVQPNIDQAAKMDDTDRVAIFEKHLRLTAVPTPADQP
RPDVIVWPETTIPFILTENPDALRQIAGALQEGQVLITGTVRSEDQGAGIAPRYYNSI
YAIDSQGQILAAADKVHLVPFGEYVPWQDILSKLGITNIIDLPGGFSQGASRSLMTLP
GGLKLYPLICYEVIFPDEMVKGLSGANAIINVTNDAWFGDTPGPFQHFQQARLRAVET
GLPIIRAANNGISALIDGRGRVFSGLRLNAEGVENATFTLSAAPETNVNHNKCNFWAV
TALLLSAAVISRLGLISRVN"
misc_feature 376401..377954
/gene="lnt"
/locus_tag="Avi_0442"
/note="apolipoprotein N-acyltransferase; Reviewed; Region:
lnt; PRK00302"
/db_xref="CDD:178970"
misc_feature 377082..377858
/gene="lnt"
/locus_tag="Avi_0442"
/note="Apolipoprotein N-acyl transferase (class 9
nitrilases); Region: ALP_N-acyl_transferase; cd07571"
/db_xref="CDD:143595"
misc_feature order(377229..377231,377421..377423,377433..377435,
377445..377447,377580..377585,377589..377594,
377652..377654)
/gene="lnt"
/locus_tag="Avi_0442"
/note="putative active site [active]"
/db_xref="CDD:143595"
misc_feature order(377229..377231,377421..377423,377580..377582)
/gene="lnt"
/locus_tag="Avi_0442"
/note="catalytic triad [active]"
/db_xref="CDD:143595"
misc_feature order(377424..377435,377442..377444,377463..377471,
377583..377585,377589..377603,377610..377615,
377697..377702,377706..377714,377718..377723,
377757..377762)
/gene="lnt"
/locus_tag="Avi_0442"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:143595"
gene 378110..378532
/locus_tag="Avi_0443"
/db_xref="GeneID:7388454"
CDS 378110..378532
/locus_tag="Avi_0443"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_002548313.1"
/db_xref="GI:222147356"
/db_xref="GeneID:7388454"
/translation="MLENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQI
QKYEKGTNRVGASRLQNISSILNVPVSFFFEDAPGEQVVAGANGFSEAASSNYVVDFL
SSSEGLQLNRAFVKINDPKVRRKVVDLVKALAADADAE"
misc_feature 378149..378481
/locus_tag="Avi_0443"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:31586"
misc_feature 378155..378328
/locus_tag="Avi_0443"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature order(378167..378169,378179..378181,378254..378256)
/locus_tag="Avi_0443"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(378176..378178,378251..378253)
/locus_tag="Avi_0443"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(378197..378202,378233..378235,378242..378244,
378254..378259)
/locus_tag="Avi_0443"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene 378706..379944
/gene="metK"
/locus_tag="Avi_0444"
/db_xref="GeneID:7388455"
CDS 378706..379944
/gene="metK"
/locus_tag="Avi_0444"
/note="catalyzes the formation of S-adenosylmethionine
from methionine and ATP; methionine adenosyltransferase"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine synthetase"
/protein_id="YP_002548314.1"
/db_xref="GI:222147357"
/db_xref="GeneID:7388455"
/translation="MRSNYLFTSESVSEGHPDKVCDRISDEIVDLVYREAARTGVDPW
TVRIACETLATTNRVVIAGEVRLPPSLMKTDKNGNEVINPAKFKAAARKAIRDIGYEQ
DGFHWKTAKIDVLLHSQSAHIAQGVDKAADHEGGEGAGDQGIMFGYACGETPDLMPAP
IYYSHKILQLLSAARKKGEGDVGKLGPDAKSQVTVRYVDGKPSDVASIVLSTQHLDES
WDSAKVRSVVEPYILEAFGDLKVADDCKWYINPTGKFVIGGPDGDAGLTGRKIIVDTY
GGAAPHGGGAFSGKDTTKVDRSAAYAARYLAKNVVAAGLAERCTIQIAYAIGIAQPLS
IYVDLHGTGKHTEDQIEAAIRSVMDLSPTGIRRHLDLNKPIYAKTSAYGHFGRKAGRD
GSFAWEKLDLVKPLKEALKG"
misc_feature 378712..379938
/gene="metK"
/locus_tag="Avi_0444"
/note="S-adenosylmethionine synthetase; Validated; Region:
PRK05250"
/db_xref="CDD:179974"
misc_feature 378712..379068
/gene="metK"
/locus_tag="Avi_0444"
/note="S-adenosylmethionine synthetase, N-terminal domain;
Region: S-AdoMet_synt_N; pfam00438"
/db_xref="CDD:201226"
misc_feature 379135..379470
/gene="metK"
/locus_tag="Avi_0444"
/note="S-adenosylmethionine synthetase, central domain;
Region: S-AdoMet_synt_M; pfam02772"
/db_xref="CDD:202384"
misc_feature 379474..379902
/gene="metK"
/locus_tag="Avi_0444"
/note="S-adenosylmethionine synthetase, C-terminal domain;
Region: S-AdoMet_synt_C; pfam02773"
/db_xref="CDD:111646"
gene 379950..380648
/gene="trmB"
/locus_tag="Avi_0445"
/db_xref="GeneID:7388456"
CDS 379950..380648
/gene="trmB"
/locus_tag="Avi_0445"
/note="tRNA (guanine-N(7)-)-methyltransferase; catalyzes
the formation of N(7)-methylguanine at position 46 (m7G46)
in tRNA by transferring the methyl residue from
S-adenosyl-L-methionine"
/codon_start=1
/transl_table=11
/product="tRNA (guanine-N(7)-)-methyltransferase"
/protein_id="YP_002548315.1"
/db_xref="GI:222147358"
/db_xref="GeneID:7388456"
/translation="MTTDRRSRATEAFFGRRKGKPLRDQQVERMTHLLPERKLDLGSA
APGDLKTLFPVPVQRIRLEIGFGGGEHLAHRARHDATTGFIGVEPFVNSMAKLLAVIE
DEGLPNIRVYDDDATQLLDWLPASSIDQIDLLYADPWPKRKHWKRRFVSQVNLERFHR
VLKPGANFCFASDIDTYVNWTLLHCRNHGGFDWLAESSADWLTPYEGWPGTRYEAKAR
REGRSSAYLTFRRT"
misc_feature 379986..380609
/gene="trmB"
/locus_tag="Avi_0445"
/note="tRNA (guanine-N(7)-)-methyltransferase; Reviewed;
Region: trmB; PRK00121"
/db_xref="CDD:178880"
gene complement(380878..381135)
/locus_tag="Avi_0446"
/db_xref="GeneID:7388457"
CDS complement(380878..381135)
/locus_tag="Avi_0446"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548316.1"
/db_xref="GI:222147359"
/db_xref="GeneID:7388457"
/translation="MLIKEATSKLSKNELAHLGSGEVGYIRKIRYDEVSRCFPDAPEI
DPRTDLWALFAADGTPILLTDNRSSTFFKAAEDELKTVSLH"
misc_feature complement(380881..381135)
/locus_tag="Avi_0446"
/note="Uncharacterized small protein [Function unknown];
Region: COG5568"
/db_xref="CDD:35127"
gene complement(381279..381707)
/gene="hspH"
/locus_tag="Avi_0447"
/db_xref="GeneID:7388458"
CDS complement(381279..381707)
/gene="hspH"
/locus_tag="Avi_0447"
/codon_start=1
/transl_table=11
/product="small heat shock protein"
/protein_id="YP_002548317.1"
/db_xref="GI:222147360"
/db_xref="GeneID:7388458"
/translation="MRRTKSITTPLLLGFDITDAVLSQLARTSDGYPPYNIELVRRTS
DHEGDRLRITLAVAGFSESDLEVLVEGNQLIIRGSQTERPDADYLFRGIAARNFQRSF
LLTDGMDVSRARMRNGLLVVELIRPDTQQMVRKINISASD"
misc_feature complement(381291..381674)
/gene="hspH"
/locus_tag="Avi_0447"
/note="Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones]; Region: IbpA; COG0071"
/db_xref="CDD:30420"
misc_feature complement(381330..381611)
/gene="hspH"
/locus_tag="Avi_0447"
/note="Alpha-crystallin domain (ACD) found in Escherichia
coli inclusion body-associated proteins IbpA and IbpB, and
similar proteins. IbpA and IbpB are 16 kDa small heat
shock proteins (sHsps). sHsps are molecular chaperones
that suppress protein aggregation...; Region:
ACD_IbpA-B_like; cd06470"
/db_xref="CDD:107227"
misc_feature complement(order(381351..381356,381408..381410,
381531..381536,381540..381542,381546..381548,
381582..381584,381594..381605))
/gene="hspH"
/locus_tag="Avi_0447"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:107227"
gene 381919..382863
/gene="iunH"
/locus_tag="Avi_0448"
/db_xref="GeneID:7388459"
CDS 381919..382863
/gene="iunH"
/locus_tag="Avi_0448"
/codon_start=1
/transl_table=11
/product="inosine-uridine preferring nucleoside hydrolase"
/protein_id="YP_002548318.1"
/db_xref="GI:222147361"
/db_xref="GeneID:7388459"
/translation="MEKPRKIIIDTDPGQDDAAAIMLALASPDQLDVLGLTVVAGNVP
LSMTSRNARIVCELSGRPDLPVYEGALKPLERPQVTAEHVHGKTGLDGAEVDEPVMPV
QDQHAVDFIIDTIRREPAGTITLCTLGPQTNIALALQKAPDIAPRIRELVMMGGGFFE
GGNITPAAEFNVYVDPQASRIVFGSGIPIVMMPLDVTHQLLTTKARVARIGAIGTRVA
KVMVDWLEFFERFDIEKYGSDGGPLHDPSVIAYLLQPELFSGRDCNVEIETESELTVG
MTVVDWWRVTGRTPNAKVMRDVDADGFFALLTERLARL"
misc_feature 381934..382851
/gene="iunH"
/locus_tag="Avi_0448"
/note="nuc_hydro_IU_UC_XIUA: inosine-uridine preferring,
xanthosine-inosine-uridine-adenosine-preferring and,
uridine-cytidine preferring nucleoside hydrolases.
Nucleoside hydrolases cleave the N-glycosidic bond in
nucleosides generating ribose and the...; Region:
nuc_hydro_IU_UC_XIUA; cd02651"
/db_xref="CDD:29579"
misc_feature order(381952..381954,381964..381969,382042..382044,
382168..382170,382300..382302,382405..382407,
382423..382425,382429..382431,382651..382653)
/gene="iunH"
/locus_tag="Avi_0448"
/note="active site"
/db_xref="CDD:29579"
misc_feature order(382138..382140,382333..382335,382459..382461,
382720..382722,382726..382731,382738..382740)
/gene="iunH"
/locus_tag="Avi_0448"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:29579"
gene 382946..383698
/locus_tag="Avi_0449"
/db_xref="GeneID:7388460"
CDS 382946..383698
/locus_tag="Avi_0449"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="YP_002548319.1"
/db_xref="GI:222147362"
/db_xref="GeneID:7388460"
/translation="MSTPKTSPEPADFTHIRDWVFDLDNTLYPHHINLFAQIDRNMTA
YVADLLQMEPDDARILQKRYYHEHGTTLAGLMAHHGVDPNDFLEKAHAIDYSALLPDV
ALGEAIKALPGRKFIFTNGTVEHAEAAARALGILDHFDDIFDIVAAAYLPKPASQTYD
IFTRLKQIDAGQAAMFEDLPRNLVVPKALGMKTVLLVPRNLEAVVLESWERMDSDEGH
AHVDYATDDLAGFLASLLAAGEFQVQSEPDRS"
misc_feature 382997..383533
/locus_tag="Avi_0449"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:212620"
misc_feature 383000..383533
/locus_tag="Avi_0449"
/note="Haloacid dehalogenase-like hydrolase; Region:
HAD_2; pfam13419"
/db_xref="CDD:205597"
misc_feature 383300..383302
/locus_tag="Avi_0449"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 383909..384709
/locus_tag="Avi_0450"
/db_xref="GeneID:7388461"
CDS 383909..384709
/locus_tag="Avi_0450"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548320.1"
/db_xref="GI:222147363"
/db_xref="GeneID:7388461"
/translation="MSAKKTTIAALAATLLVSASSGAVFAKDGKAPPPPPPPPRPEEM
RDACGPRPMMMRGPAAMFIFALQQFDTNKDGKISKEEAKAAEDKLFTAIDTDKDGVLT
PGELRKFHEARMEAMRADMPKAPGPEGAAPADPNGPKPDEATDQPPPPPPGGLGAEDD
AMGPPDDGMAGCGPHRPGPERWAKERGPEGERMGGPHGHRPMMAMGPMGGPMGAMRLL
EKVDTDENGQISKAEADAALDKLFTRLDTNKDGFISADDFPKGPSLLP"
misc_feature 384101..384160
/locus_tag="Avi_0450"
/note="EF-hand, calcium binding motif; A diverse
superfamily of calcium sensors and calcium signal
modulators; most examples in this alignment model have 2
active canonical EF hands. Ca2+ binding induces a
conformational change in the EF-hand motif, leading to...;
Region: EFh; cl08302"
/db_xref="CDD:208857"
gene complement(384842..386710)
/gene="mcpC"
/locus_tag="Avi_0452"
/db_xref="GeneID:7388462"
CDS complement(384842..386710)
/gene="mcpC"
/locus_tag="Avi_0452"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
/protein_id="YP_002548321.1"
/db_xref="GI:222147364"
/db_xref="GeneID:7388462"
/translation="MLVILLGLFSYKQTSVVFSAASDTRQVWMPRMAKLDGIQFTMLR
YHTTTIRKTIAVDPSEIKGLDDEFVEMDASIPKSYADFRATLRNDAEKKLWGDFEAKW
TRYLEFQKKIINAVAAKDQVAATAAIAPARQPLVDSFIALGEIIKLNDSGAAASSTAA
EAAYTQSSYVTIGVILFGVLLMSILTVWIILGVSRPVTRMAKVMLHIADGKLDVTVPD
ADRKDEIGEMAGAVEVMRQSALAKVQLEAQTEQNRLNAEQERKDVQRRAEEDAERRLN
EATGALAAGLKRLASCDLLCEIDQQFAAQFEPLRHDFNASVNQLRSALVAVGQVGKGV
TNGSGEISQASDTLAKRTEQQAASLEETAAALEQITSNVQATSKRTGEARNLVRNARQ
HAEHSATVVNNAVSAMERIEDASRKITQIISVIDEIAFQTNLLALNAGVEAARAGEAG
KGFAVVAQEVRELAQRSANAAKEIKSLIGNSEAAVSEGVKLVNDTGEGLTTISKVVED
MNQHMDAIATAAQEQASGLAEVNTAVNHMDQATQQNAAMVEEMNAAGAGLNQESRRLS
DLLAQFRTGNDIAQPVRSAPASPAPAPRAQAPRRAQQSVPVSHGNAAVSRDNWEEF"
misc_feature complement(<386369..386707)
/gene="mcpC"
/locus_tag="Avi_0452"
/note="Four helix bundle sensory module for signal
transduction; Region: 4HB_MCP_1; pfam12729"
/db_xref="CDD:193205"
misc_feature complement(385997..386134)
/gene="mcpC"
/locus_tag="Avi_0452"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature complement(order(385997..385999,386006..386011,
386015..386020,386027..386032,386036..386041,
386090..386092,386096..386101,386108..386113,
386117..386122,386129..386134))
/gene="mcpC"
/locus_tag="Avi_0452"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(384992..385735)
/gene="mcpC"
/locus_tag="Avi_0452"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature complement(385055..385606)
/gene="mcpC"
/locus_tag="Avi_0452"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature complement(order(385058..385063,385070..385072,
385079..385084,385091..385093,385100..385105,
385109..385114,385121..385126,385130..385135,
385142..385144,385151..385156,385163..385165,
385172..385177,385184..385189,385193..385198,
385205..385207,385214..385219,385226..385228,
385235..385240,385277..385282,385289..385294,
385298..385303,385310..385315,385322..385324,
385331..385336,385343..385345,385352..385354,
385364..385366,385385..385387,385394..385396,
385406..385408,385415..385420,385427..385429,
385436..385438,385445..385450,385457..385462,
385469..385471,385478..385483,385487..385489,
385499..385504,385508..385513,385520..385522,
385529..385534,385541..385546,385553..385555,
385562..385567,385574..385576,385583..385588,
385592..385597,385604..385606))
/gene="mcpC"
/locus_tag="Avi_0452"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature complement(385319..385420)
/gene="mcpC"
/locus_tag="Avi_0452"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(387089..387165)
/locus_tag="Avi_4595"
/db_xref="GeneID:7388463"
tRNA complement(387089..387165)
/locus_tag="Avi_4595"
/product="tRNA-Arg"
/db_xref="GeneID:7388463"
gene complement(387323..388747)
/locus_tag="Avi_0453"
/db_xref="GeneID:7387185"
CDS complement(387323..388747)
/locus_tag="Avi_0453"
/codon_start=1
/transl_table=11
/product="two component sensor kinase"
/protein_id="YP_002548322.1"
/db_xref="GI:222147365"
/db_xref="GeneID:7387185"
/translation="MPSRLRGLSGKLLVLTVIFVLAAQVLIFAPSIATMRLNWLKNHI
NKAAAAAVVIDGLQPPELPKDVQADTLLATGTKAIALTKDGTTRLLAMADMPQEVDGQ
YDISDVGTLTAIKDAVDTLLFGGNRLISVSGPIGDTSMRVEVVMSDAPLHRGLLAYAT
RIAVVSLIISVITGLLLFVTLNRMLINPIRRLSRNIQAFASDPENPDRVMEVISGRDE
LAFVARHLATMQEDLQKTLRQQKSLADLGLAVSKINHDMRNILASAQLMSDRLVDVDD
PMVKSFAPKLVRTIDRAVGYTSEVLAYGQASEAEPRRRRFVLSTLSQEVQDILALDKG
IDFVDQISPDIEIDADSEQLFRVIHNLCRNAAQALSSAMTEMTTATPRILLSAHRIGS
VVAITVDDNGPGLPRKARENLFTPFRGSARSGGTGLGLAIAREIVLAHGGTIALMEKP
SSGTQFRIEIPDRPVALDTFRLRA"
misc_feature complement(387344..388369)
/locus_tag="Avi_0453"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(388043..388261)
/locus_tag="Avi_0453"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cl01054"
/db_xref="CDD:198627"
misc_feature complement(387368..387688)
/locus_tag="Avi_0453"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(387380..387382,387386..387391,
387404..387406,387410..387412,387458..387469,
387533..387538,387542..387544,387548..387550,
387554..387556,387647..387649,387656..387658,
387668..387670))
/locus_tag="Avi_0453"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(387656..387658)
/locus_tag="Avi_0453"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(387461..387463,387467..387469,
387536..387538,387542..387544))
/locus_tag="Avi_0453"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 389401..389790
/gene="rnpA"
/locus_tag="Avi_0454"
/db_xref="GeneID:7388464"
CDS 389401..389790
/gene="rnpA"
/locus_tag="Avi_0454"
/note="protein component of RNaseP which catalyzes the
removal of the 5'-leader sequence from pre-tRNA to produce
the mature 5'terminus; this enzyme also cleaves other RNA
substrates"
/codon_start=1
/transl_table=11
/product="ribonuclease P"
/protein_id="YP_002548323.1"
/db_xref="GI:222147366"
/db_xref="GeneID:7388464"
/translation="MTSLKTSKTVGRLKSRPQFLAVRVGEKRKGRYILLEVLDRAEPD
TPPRVGFTVTKKHGNAVERNRMRRRLKEAVRTGAGFAMQPGHDYVIVARRDVLSAPFG
ELRDVLQRRIQEKSNVRRQDTARSRKV"
misc_feature 389401..389787
/gene="rnpA"
/locus_tag="Avi_0454"
/note="ribonuclease P; Reviewed; Region: rnpA; PRK01313"
/db_xref="CDD:167209"
gene 389787..391649
/locus_tag="Avi_0455"
/db_xref="GeneID:7388465"
CDS 389787..391649
/locus_tag="Avi_0455"
/note="functions to insert inner membrane proteins into
the IM in Escherichia coli; interacts with transmembrane
segments; functions in both Sec-dependent and -independent
membrane insertion; similar to Oxa1p in mitochondria"
/codon_start=1
/transl_table=11
/product="putative inner membrane protein translocase
component YidC"
/protein_id="YP_002548324.1"
/db_xref="GI:222147367"
/db_xref="GeneID:7388465"
/translation="MMENNRNYLIAIALSVMVVLGWQFFYMNPRIEAQRQAEQAQQAQ
QAKTPATQATPGAAVNGALPGQTQASATTSREDAVAKSARVEINTEALSGSINLTGAR
LDDLRLKGYHETVDKTSPIITLLNPADTKDGYFAEIGFIGGEKSGSVPGPSTVWTVKD
GQTLTETTPVTLTYTNETGLTFSRKISVDKHYMFTIEDTVANAGGADISLAPYGRVTR
YNKPAVASTYVLHEGFIGVMGSGDGKFASVEAKYAAIEKENETNAKATGGWLGITDKY
WAATLVPPQSLAYDSRFSHFTDGQARFQADYKNDPVTIAPGQSTTLKTLLFAGAKEVP
VVDGYALDKSWFGQAFTNLFAGAKDTVQQYDIPRFDLLIDWGWFYFLTKPMFKLMDFF
FRQVGNFGVAILLTTIAVKLLFFPLASKQYASMANMKRMQPKMEELKAKHGDDRMALQ
QAMMELYKTEKINPVAGCWPLLLQIPVFFALYKVIYITIEMRHAPFFGWIHDLSAPDP
TSFVNLFGLLPFESPAMLHLGIWPIIMGITMFVQMRMNPTPPDPTQAMLFNWMPLVFT
FMLGSFPAGLVIYWAWNNTLSVLQQSIIMKRHGVKIELFDNLKGLFQRKSAKTK"
misc_feature 389793..391619
/locus_tag="Avi_0455"
/note="membrane protein insertase; Provisional; Region:
PRK01318"
/db_xref="CDD:179279"
misc_feature 390978..391574
/locus_tag="Avi_0455"
/note="membrane protein insertase, YidC/Oxa1 family,
C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592"
/db_xref="CDD:211846"
gene 391736..392395
/gene="engB"
/locus_tag="Avi_0456"
/db_xref="GeneID:7388466"
CDS 391736..392395
/gene="engB"
/locus_tag="Avi_0456"
/note="binds guanine nucleotides; in Escherichia coli
depletion results in defective cell division and
filamentation; in Bacillus subtilis this gene is
essential"
/codon_start=1
/transl_table=11
/product="ribosome biogenesis GTP-binding protein YsxC"
/protein_id="YP_002548325.1"
/db_xref="GI:222147368"
/db_xref="GeneID:7388466"
/translation="MTATKATSDQPLFGRPWIFIRGVPSMKFLPPEGPLEIAFAGRSN
VGKSSLINALVGQKGLARTSNTPGRTQELNYFVPEGYSGEGDDLPPMALVDMPGYGYA
KAPKDHVDAWTKLVFDYLRGRATLKRVYLLIDSRHGIKANDEDVLTLLDKAAMSYQIV
LTKTDKIKEAGVPRLIEETLEKIRKRPAAYPFVLSTSSEKDKGLKELRAAICETVGHF
G"
misc_feature 391769..392392
/gene="engB"
/locus_tag="Avi_0456"
/note="Predicted GTPase [General function prediction
only]; Region: COG0218"
/db_xref="CDD:30567"
misc_feature 391841..392374
/gene="engB"
/locus_tag="Avi_0456"
/note="YihA (EngB) GTPase family; Region: YihA_EngB;
cd01876"
/db_xref="CDD:206665"
misc_feature 391856..391879
/gene="engB"
/locus_tag="Avi_0456"
/note="G1 box; other site"
/db_xref="CDD:206665"
misc_feature order(391862..391882,391922..391930,391937..391945,
392018..392020,392222..392224,392228..392230,
392324..392329)
/gene="engB"
/locus_tag="Avi_0456"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206665"
misc_feature 391934..391954
/gene="engB"
/locus_tag="Avi_0456"
/note="Switch I region; other site"
/db_xref="CDD:206665"
misc_feature 391943..391945
/gene="engB"
/locus_tag="Avi_0456"
/note="G2 box; other site"
/db_xref="CDD:206665"
misc_feature 392018..392029
/gene="engB"
/locus_tag="Avi_0456"
/note="G3 box; other site"
/db_xref="CDD:206665"
misc_feature order(392027..392038,392057..392101,392108..392113)
/gene="engB"
/locus_tag="Avi_0456"
/note="Switch II region; other site"
/db_xref="CDD:206665"
misc_feature 392219..392230
/gene="engB"
/locus_tag="Avi_0456"
/note="G4 box; other site"
/db_xref="CDD:206665"
misc_feature 392324..392332
/gene="engB"
/locus_tag="Avi_0456"
/note="G5 box; other site"
/db_xref="CDD:206665"
gene complement(392587..393144)
/locus_tag="Avi_0459"
/db_xref="GeneID:7388467"
CDS complement(392587..393144)
/locus_tag="Avi_0459"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548326.1"
/db_xref="GI:222147369"
/db_xref="GeneID:7388467"
/translation="MTKTTLRLLAAVSIIAAGSAVAFAKNPMVGGAAMYENKNIVENA
VNSKDHTTLVAAVKAAGLVETLEGKGPFTVFAPTNEAFDKLPKGTVETLLKPENKEKL
TKVLTCHVVAADAMSTAIEKMIKDDGGEHDVKTVGGCVLKAKESKGKITLTDETGGVA
HVTIADVKQSNGVIHVIDKVLLPKM"
misc_feature complement(392590..393066)
/locus_tag="Avi_0459"
/note="Secreted and surface protein containing
fasciclin-like repeats [Cell envelope biogenesis, outer
membrane]; Region: COG2335"
/db_xref="CDD:32486"
misc_feature complement(392596..393003)
/locus_tag="Avi_0459"
/note="Fasciclin domain; Region: Fasciclin; pfam02469"
/db_xref="CDD:202249"
gene complement(393399..394121)
/locus_tag="Avi_0461"
/db_xref="GeneID:7388468"
CDS complement(393399..394121)
/locus_tag="Avi_0461"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548327.1"
/db_xref="GI:222147370"
/db_xref="GeneID:7388468"
/translation="MTTPDQSKGDRSRDEVLAGEYVLGVLSAQGRVEVEARLKRDRPF
AAIVQRWEENLSQFNDDYGVELPRPESFQKLEARLFIDRSNGPAGPWARLWHSVPFWR
GLSLTSLIAVASLVGVELGMWESRYAVRPLVADLQTQNADLSLVASYDRQSGRLRVTP
VASRAEGQKSLELWMVEANKPPRSLGVLPQSGEGEFLVPDSMRPRLKDGVTLAVSIEP
FGGSPTGIATGPVIASGKTHIP"
misc_feature complement(393417..394121)
/locus_tag="Avi_0461"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5343"
/db_xref="CDD:34920"
misc_feature complement(393414..393923)
/locus_tag="Avi_0461"
/note="Anti-sigma-K factor rskA; Region: RskA; pfam10099"
/db_xref="CDD:150739"
gene complement(394118..394699)
/gene="sigK"
/locus_tag="Avi_0463"
/db_xref="GeneID:7388469"
CDS complement(394118..394699)
/gene="sigK"
/locus_tag="Avi_0463"
/codon_start=1
/transl_table=11
/product="sigma factor"
/protein_id="YP_002548328.1"
/db_xref="GI:222147371"
/db_xref="GeneID:7388469"
/translation="MNAAIPGPLREVDAWMSDEIGILLGKIALKDRMALSELYRRTSP
KLFGICLRLLKDRSEAEDAMQEIFVKIWQRAQSFAATGHNAMGWLGTIARYHCIDRLR
TRTPVSIELDEAWHVADSAPDPEQTASIRSEGKRIDSCMEALEADRAAAVRQAYVEGL
SYQELAEQFNVPLNTMRTWLRRSLLALRECLER"
misc_feature complement(394121..394648)
/gene="sigK"
/locus_tag="Avi_0463"
/note="RNA polymerase sigma factor; Provisional; Region:
PRK12514"
/db_xref="CDD:105710"
misc_feature complement(394388..394588)
/gene="sigK"
/locus_tag="Avi_0463"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(394136..394294)
/gene="sigK"
/locus_tag="Avi_0463"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(394148..394150,394154..394159,
394163..394171,394175..394180,394184..394186,
394214..394219,394235..394237,394265..394267))
/gene="sigK"
/locus_tag="Avi_0463"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 394801..395688
/gene="argB"
/locus_tag="Avi_0464"
/db_xref="GeneID:7388470"
CDS 394801..395688
/gene="argB"
/locus_tag="Avi_0464"
/note="catalyzes the phosphorylation of
N-acetyl-L-glutamate to form N-acetyl-L-glutamate
5-phosphate"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase"
/protein_id="YP_002548329.1"
/db_xref="GI:222147372"
/db_xref="GeneID:7388470"
/translation="MSASESQTQARLLAQALPFMQRYENKTIVVKYGGHAMGDAELGR
AFAADIALLKQSGVNPIVVHGGGPQIGAMLTKMGIESKFEGGLRVTDQKTVEIVEMVL
AGSINKEIVALINQTGEWAIGLCGKDGNMVFAEKAKKTVIDPDSHIERVLDLGFVGEV
VEVDRTLLDLLAKSEMIPVIAPVAPGRDGHTYNINADTFAGAIAGALRADRLLFLTDV
PGVLDKNGELFKELSVAQARALIKDGTISGGMIPKVETCIDAINAGVHGVVILNGKTA
HSVLLEIFTEHGAGTLIVP"
misc_feature 394834..395679
/gene="argB"
/locus_tag="Avi_0464"
/note="AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic
(NAGK-C) catalyzes the phosphorylation of the gamma-COOH
group of N-acetyl-L-glutamate (NAG) by ATP in the second
step of arginine biosynthesis found in some bacteria and
photosynthetic organisms using the...; Region: AAK_NAGK-C;
cd04250"
/db_xref="CDD:58616"
misc_feature 394834..394863
/gene="argB"
/locus_tag="Avi_0464"
/note="feedback inhibition sensing region; other site"
/db_xref="CDD:58616"
misc_feature order(394837..394845,394849..394851,394858..394863,
394942..394944,394954..394956,394966..394968,
395026..395031,395086..395088,395095..395100,
395113..395115,395122..395124,395134..395136,
395155..395157,395161..395169,395173..395175,
395179..395190,395299..395301,395326..395328,
395629..395631,395638..395643,395653..395655)
/gene="argB"
/locus_tag="Avi_0464"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:58616"
misc_feature 394876..395682
/gene="argB"
/locus_tag="Avi_0464"
/note="carbamate kinase; Reviewed; Region: PRK12686"
/db_xref="CDD:183683"
misc_feature order(394891..394893,394900..394905,395383..395385,
395446..395454,395464..395466,395533..395535,
395539..395541,395545..395550,395557..395559)
/gene="argB"
/locus_tag="Avi_0464"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58616"
misc_feature order(394993..394998,395059..395064,395377..395379,
395383..395388)
/gene="argB"
/locus_tag="Avi_0464"
/note="N-acetyl-L-glutamate binding site [chemical
binding]; other site"
/db_xref="CDD:58616"
gene complement(395746..396645)
/gene="rbsK"
/locus_tag="Avi_0465"
/db_xref="GeneID:7388471"
CDS complement(395746..396645)
/gene="rbsK"
/locus_tag="Avi_0465"
/codon_start=1
/transl_table=11
/product="ribokinase"
/protein_id="YP_002548330.1"
/db_xref="GI:222147373"
/db_xref="GeneID:7388471"
/translation="MITVFGSINMDLIATTSRLPKPGETVAGNGFATAAGGKGANQAL
AARRAGAQVRMAGAVGKDGFAAPALALLEESGTDLDSVKTVAEATGTALILVGGDGEN
MIAVVPGANGSLTSADASAAIKTMTRNDSLVLQLEIPAAAVETALHEAKAAGIRSILN
IAPLTEEAARLGRMADIVIANETEFERLAGETNMGAAEREAALVRLHGETGQILIVTL
GAEGVIAIRDGKIERASGLTIEPVDTVGAGDTFCGYLAAGLDAGFAFEEALHRAAVAG
SLACLKAGAQPAIPLAEAVTERL"
misc_feature complement(395749..396645)
/gene="rbsK"
/locus_tag="Avi_0465"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature complement(395776..396645)
/gene="rbsK"
/locus_tag="Avi_0465"
/note="Ribokinase catalyses the phosphorylation of ribose
to ribose-5-phosphate using ATP. This reaction is the
first step in the ribose metabolism. It traps ribose
within the cell after uptake and also prepares the sugar
for use in the synthesis of nucleotides...; Region:
ribokinase; cd01174"
/db_xref="CDD:29358"
misc_feature complement(order(395791..395793,395899..395901,
395908..395913,396235..396237,396328..396330,
396334..396336,396364..396366,396370..396372,
396523..396525,396532..396540,396613..396615,
396619..396621))
/gene="rbsK"
/locus_tag="Avi_0465"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29358"
misc_feature complement(order(396157..396159,396322..396345,
396361..396369,396373..396375,396532..396534,
396571..396591,396604..396606,396610..396612))
/gene="rbsK"
/locus_tag="Avi_0465"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29358"
misc_feature complement(order(395806..395808,395815..395820,
395827..395829,395893..395895,395902..395907,
395914..395916,395923..395925,395941..395943,
395980..395982,395989..395997,396103..396105))
/gene="rbsK"
/locus_tag="Avi_0465"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29358"
gene complement(396732..397970)
/locus_tag="Avi_0466"
/db_xref="GeneID:7388472"
CDS complement(396732..397970)
/locus_tag="Avi_0466"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548331.1"
/db_xref="GI:222147374"
/db_xref="GeneID:7388472"
/translation="MNQMLSALSRPALAYGENQFSFGAVALILAVIVLAALWLRLCLK
LRQKEDFDLGAAIAAERQASEDRRLEALMQAQAEMQGRLATMADLFGARQSEFNRSIN
ERLDGMTHRLGSTITEQTKSTHDNLRILQERLAVIDAAQNNIQSLAKDVVGLQAILSN
KQTRGAFGQARMETIIADGLPMGAYAFQDTLSNGSRPDCTIRMPNGQPPLVIDAKFPL
EAWNAIRDGTTPEQKKLAGQQFRRDMEVHLKDIAEKYLMHGETQDTAFLFVPSESIFA
EIHENFEGIVQRAHKLRVVIVSPSLLMLSIQVIQAVLKDQRMREQAHLIQGEVIHLME
DLGRLDERTRKLQSHFLAAQKDVEMILTSTDKLNRRSARIEAMDFASAPDPTAKPAPQ
TDASVESRTGLLKLRLVDED"
misc_feature complement(396735..>397763)
/locus_tag="Avi_0466"
/note="Predicted nuclease of restriction endonuclease-like
fold, RmuC family [General function prediction only];
Region: COG1322"
/db_xref="CDD:31513"
misc_feature complement(396795..397667)
/locus_tag="Avi_0466"
/note="RmuC family; Region: RmuC; pfam02646"
/db_xref="CDD:111535"
gene 398422..399657
/gene="flgE"
/locus_tag="Avi_0470"
/db_xref="GeneID:7388473"
CDS 398422..399657
/gene="flgE"
/locus_tag="Avi_0470"
/note="the hook connects flagellar basal body to the
flagellar filament"
/codon_start=1
/transl_table=11
/product="flagellar hook protein FlgE"
/protein_id="YP_002548332.1"
/db_xref="GI:222147375"
/db_xref="GeneID:7388473"
/translation="MSLASAMNSSVSGLTAQSNKLTSIGDNISNTSTTGYKGTETAFS
SLVNGGTTSTTTQTVSQSGDLESTSSETDLAIDGDGYFVVQDDEGDVFLTRQGDFEID
EDGYLVNSSGYTLLGYSYDNGEPASVINGFDGLEPVKIDTSEVTASATTTGEVSGNLE
SDEEVVSGDTPSSNSADATFTAKSSIVTYDEQGASTQYDIYFTKTDDDEWEVSIYRND
EANDDDDGTSFPYDNGELGSTTLTFDSAGELEDGSTSTLSFTDSETGLTIDLDFSDIT
QTATSTSIEGSANGSAASSSSDYTIGSDGVISTVSSDGTTTDTYKIALATVASPDNLE
EVGGTAYKVDADSGTVVVGFAGTGSFGTIESSTLESSNVDLASELSDMIAAQRAYSAN
SKVFQTAADMLDTVINMVR"
misc_feature 398437..399648
/gene="flgE"
/locus_tag="Avi_0470"
/note="flagellar hook protein FlgE; Validated; Region:
flgE; PRK05682"
/db_xref="CDD:180198"
misc_feature 398440..398532
/gene="flgE"
/locus_tag="Avi_0470"
/note="Flagella basal body rod protein; Region:
Flg_bb_rod; pfam00460"
/db_xref="CDD:109515"
misc_feature 398953..399273
/gene="flgE"
/locus_tag="Avi_0470"
/note="Flagellar basal body protein FlaE; Region: FlaE;
pfam07559"
/db_xref="CDD:203683"
misc_feature 399412..399648
/gene="flgE"
/locus_tag="Avi_0470"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene complement(399907..400785)
/locus_tag="Avi_0471"
/db_xref="GeneID:7388474"
CDS complement(399907..400785)
/locus_tag="Avi_0471"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548333.1"
/db_xref="GI:222147376"
/db_xref="GeneID:7388474"
/translation="MAKMRNGKRRKTDGSWAPLKDNQTDRRNARIVPQTPQTLSPSYR
LAYADDDFLCREELRPVRLQLELLKTEMVLSERGIKSTVVMFGGARIPAPGQSAWAAR
NDIQRRNLEAASVFYDEARAFARQCSQYAARFDYQEYVIVTGGGPGVMEAGNRGAADV
GAPSIGLNIVLPHEQAPNAFVTPDLSFNFHYFAIRKMHFLMRAKAIVVFPGGFGTLDE
MFEAVTLIQTKRMAPIPLILFGREFWHRIIDFDSLAEFGTIAPDDVKLLSFVETADEA
WDIIARRYEIETAETA"
misc_feature complement(399913..400581)
/locus_tag="Avi_0471"
/note="Predicted Rossmann fold nucleotide-binding protein
[General function prediction only]; Region: COG1611"
/db_xref="CDD:31799"
gene 401052..401909
/gene="dapD"
/locus_tag="Avi_0473"
/db_xref="GeneID:7388475"
CDS 401052..401909
/gene="dapD"
/locus_tag="Avi_0473"
/codon_start=1
/transl_table=11
/product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase"
/protein_id="YP_002548334.1"
/db_xref="GI:222147377"
/db_xref="GeneID:7388475"
/translation="MSAMDLSSLQTVIDTAFDNRDTITLSTKGEVRDAVEQSLALLDQ
GKVRVATRGEDGQWTVHQWLKKAVLLSFRLNDMEVVKGGPGASTWWDKVPSKFEGWGE
NQFRAAGFRAVPNAVVRHSAFIAPNAILMPSFVNLGAYVGEGTMVDTWATVGSCAQIG
RHVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIIREGAVLGMGVYIGKS
TKIIDRATGEVMYGEVPPYSVVVAGSMPSPNTMPNGLPAPSLYCAVIVKRVDAQTRSK
TGINELLRD"
misc_feature 401067..401903
/gene="dapD"
/locus_tag="Avi_0473"
/note="2,3,4,5-tetrahydropyridine-2,6-carboxylate
N-succinyltransferase; Provisional; Region: dapD;
PRK11830"
/db_xref="CDD:183330"
misc_feature 401376..401789
/gene="dapD"
/locus_tag="Avi_0473"
/note="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP)
N-succinyltransferase (also called THP
succinyltransferase): THDP N-succinyltransferase catalyzes
the conversion of tetrahydrodipicolinate and succinyl-CoA
to N-succinyltetrahydrodipicolinate and CoA; Region:
LbH_THP_succinylT; cd03350"
/db_xref="CDD:100041"
misc_feature order(401382..401387,401394..401399,401445..401447,
401451..401453,401499..401507,401553..401555,
401631..401633,401637..401639,401691..401693,
401772..401783,401787..401789)
/gene="dapD"
/locus_tag="Avi_0473"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100041"
misc_feature order(401382..401384,401406..401408,401442..401444,
401457..401459,401493..401495,401514..401516,
401541..401543,401547..401549,401568..401570,
401574..401579,401586..401588,401625..401633,
401646..401648,401679..401684)
/gene="dapD"
/locus_tag="Avi_0473"
/note="active site"
/db_xref="CDD:100041"
misc_feature order(401382..401384,401406..401408,401442..401444,
401457..401459,401493..401495,401514..401516,
401574..401576)
/gene="dapD"
/locus_tag="Avi_0473"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100041"
misc_feature order(401547..401552,401568..401570,401586..401588,
401625..401633,401646..401648,401679..401684)
/gene="dapD"
/locus_tag="Avi_0473"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100041"
gene 402014..403228
/gene="dapE"
/locus_tag="Avi_0474"
/db_xref="GeneID:7388476"
CDS 402014..403228
/gene="dapE"
/locus_tag="Avi_0474"
/note="dapE-encoded N-succinyl-L,L-diaminopimelic acid
desuccinylase (DapE), catalyzes the hydrolysis of
N-succinyl-L,Ldiaminopimelate L,L-SDAP to
L,L-diaminopimelate and succinate. It is a metalloprotease
containing dinuclear active sites. Its structure is
similar to the carboxypeptidase G2 from Pseudomonas sp.
strain RS-16 and the aminopeptidase from Aeromonas
proteolytica."
/codon_start=1
/transl_table=11
/product="succinyl-diaminopimelate desuccinylase"
/protein_id="YP_002548335.1"
/db_xref="GI:222147378"
/db_xref="GeneID:7388476"
/translation="MSKHPANSSATDPVDNLQTLIRCPSVTPAEGGALSALAAMLEPL
GFTVERMVAREEGTPDVENLYARLGTEGPHLMFAGHTDVVPVGNEADWTYPPFSAEIA
GGELYGRGAVDMKGGIACFVAAIARHIESQGAPKGSISFLITGDEEGPSINGTTKLLE
WAAAKGERWDACLVGEPTNPDQLGDMIKIGRRGSLSGEIIVKGVQGHAAYPHLADNPV
RGMIKLAEALMHPAFDAGTENFQPSNLEVTTIDVGNAATNVIPARASAKFNIRFNDTW
TAETLRTEIIARLDTASADPLLRPGRPPIAYELVWADRPSQVFLTRNNALISSLSAAI
EKMTGKTPALSTTGGTSDARFIKDYCPVVEFGLVGQTMHMVDERVAVSDLEALTGIYG
AFISSWFTHAGA"
misc_feature 402041..403213
/gene="dapE"
/locus_tag="Avi_0474"
/note="succinyl-diaminopimelate desuccinylase; Reviewed;
Region: PRK13009"
/db_xref="CDD:183838"
misc_feature 402053..403198
/gene="dapE"
/locus_tag="Avi_0474"
/note="M20 Peptidase proteobacterial DapE encoded
N-succinyl-L,L-diaminopimelic acid desuccinylase; Region:
M20_DapE_proteobac; cd03891"
/db_xref="CDD:193511"
misc_feature order(402251..402253,402350..402352,402452..402457,
402539..402541,403130..403132)
/gene="dapE"
/locus_tag="Avi_0474"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193511"
misc_feature order(402599..402601,402632..402643,402659..402661,
402665..402670,402677..402682,402686..402691,
402698..402700,402743..402745,402749..402772,
402791..402796,402818..402820,402824..402826,
403055..403057)
/gene="dapE"
/locus_tag="Avi_0474"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193511"
gene 403215..403811
/locus_tag="Avi_0475"
/db_xref="GeneID:7388477"
CDS 403215..403811
/locus_tag="Avi_0475"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548336.1"
/db_xref="GI:222147379"
/db_xref="GeneID:7388477"
/translation="MPGLKEVEIYLTGIWLLLKGDRQGFSYLDLSDRGVNRSFWSIAW
SLPAMMFSWVFWYQALLEDIPVYAQMRTLFFLRMTMIDLASWMLPLILVGFICRFFSI
DDRFNALVVTSNWLALPIAYANALLIAISVLMPGLGQVVILLWLLLLLGLVGGVFRLT
SAVLDGQTLLVSTITVVMLVPTTLLSEFLERYLDVAPL"
gene 403945..404541
/locus_tag="Avi_0476"
/db_xref="GeneID:7388478"
CDS 403945..404541
/locus_tag="Avi_0476"
/codon_start=1
/transl_table=11
/product="Disulfide bonded thioredoxin protein"
/protein_id="YP_002548337.1"
/db_xref="GI:222147380"
/db_xref="GeneID:7388478"
/translation="MIKRRTLVAAAACLATPGLLRAKELGPQEIFFDKDIPVLGNPKG
DVTIAEFFDYQCGYCKTYHPIVSKVVKDDGHVRLVMKDWPVFGPASVVAAQAVLSIPD
LGQYKAAQDALLDMKGGLTPDSVSQALESVGVNMTVVKAAANKNSDKISRLLDRNWLQ
AQALNFRGTPSFVIGTTLYPGALDEKALKEAIAKARAA"
misc_feature 404062..404487
/locus_tag="Avi_0476"
/note="DsbA family, Com1-like subfamily; composed of
proteins similar to Com1, a 27-kDa outer
membrane-associated immunoreactive protein originally
found in both acute and chronic disease strains of the
pathogenic bacteria Coxiella burnetti. It contains a
CXXC...; Region: DsbA_Com1_like; cd03023"
/db_xref="CDD:48572"
misc_feature 404083..404469
/locus_tag="Avi_0476"
/note="DSBA-like thioredoxin domain; Region: DSBA;
pfam01323"
/db_xref="CDD:201729"
misc_feature order(404110..404112,404119..404121)
/locus_tag="Avi_0476"
/note="catalytic residues [active]"
/db_xref="CDD:48572"
gene 404706..405830
/locus_tag="Avi_0477"
/db_xref="GeneID:7388479"
CDS 404706..405830
/locus_tag="Avi_0477"
/codon_start=1
/transl_table=11
/product="hydroxypyruvate reductase"
/protein_id="YP_002548338.1"
/db_xref="GI:222147381"
/db_xref="GeneID:7388479"
/translation="MAAALETLWDGPLEGVVVTRYGYGCPLARLELLEAAHPVPDANG
LAAAERLKHLVAPLGPDDLVIALICGGGSALLPAPPAGMTLEDEIDLNRQLLACGAPI
SAMNVVRKHLSTIKGGRLAALTKAPVVSLIVSDIPGDNPAHVASGPTVPDASTRHQAL
EIVRAYGLRLPQAALDHLNSPGSDAPRPDDPAFARNRHHVIASASVSLEAAALAAEAA
GVRAAILSDSIEGEARDVAGVHAALAREIAAKDRPFPKPVVLLSGGETTVTIKNQGTQ
ATGRGGRNSAFALAMALGIAGHDIEVLAADTDGIDGTENNAGAFADGTSIVRLKQQGL
DGAALLDAHDSYSAFEALGDLFETGPTGTNVNDFRAILIR"
misc_feature 404706..405827
/locus_tag="Avi_0477"
/note="Putative glycerate kinase [Carbohydrate transport
and metabolism]; Region: GckA; COG2379"
/db_xref="CDD:32526"
misc_feature <404706..405239
/locus_tag="Avi_0477"
/note="Domain of unknown function (DUF4147); Region:
DUF4147; pfam13660"
/db_xref="CDD:205837"
misc_feature 405474..405806
/locus_tag="Avi_0477"
/note="MOFRL family; Region: MOFRL; pfam05161"
/db_xref="CDD:203185"
gene complement(405842..406717)
/gene="hslO"
/locus_tag="Avi_0478"
/db_xref="GeneID:7388480"
CDS complement(405842..406717)
/gene="hslO"
/locus_tag="Avi_0478"
/codon_start=1
/transl_table=11
/product="chaperonin heat shock protein 33"
/protein_id="YP_002548339.1"
/db_xref="GI:222147382"
/db_xref="GeneID:7388480"
/translation="MLNTILDRHDYPPAVARLLAEAIALTVLIGTSLKFEGKFIVQTK
SDGPVDLLVCDFATPENVRAYARFDEERLAQALADGKSTPTDLLGAGILAFTIDQGNY
MQPYQGIVPLDGSSLEDIAGFYFRQSEQIPTRVRLAVAELFDRDSSGKPRHSWRAGGL
IAQFLPEAPERMHQGDLPGGDGDDNAYDGPDDDNWAEARMLVETIDGDELTDPQIGTE
RLLFRLFHERGVRVYEPQAVHDRCSCSRDKIKGVLKGFTAEEIAASEEEGEISVTCEF
CSTTYKYEADEVTPA"
misc_feature complement(405854..406717)
/gene="hslO"
/locus_tag="Avi_0478"
/note="Disulfide bond chaperones of the HSP33 family
[Posttranslational modification, protein turnover,
chaperones]; Region: COG1281"
/db_xref="CDD:31472"
misc_feature complement(405866..406714)
/gene="hslO"
/locus_tag="Avi_0478"
/note="Heat shock protein 33 (Hsp33): Cytosolic protein
that acts as a molecular chaperone under oxidative
conditions. In normal (reducing) cytosolic conditions,
four conserved Cys residues are coordinated by a Zn ion.
Under oxidative stress (such as heat...; Region: Hsp33;
cd00498"
/db_xref="CDD:29605"
misc_feature complement(order(405992..405994,406229..406231,
406328..406336,406346..406348))
/gene="hslO"
/locus_tag="Avi_0478"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29605"
misc_feature complement(order(406220..406231,406241..406243,
406247..406249))
/gene="hslO"
/locus_tag="Avi_0478"
/note="domain crossover interface; other site"
/db_xref="CDD:29605"
misc_feature complement(order(405887..405889,405896..405898,
405986..405988,405992..405994))
/gene="hslO"
/locus_tag="Avi_0478"
/note="redox-dependent activation switch; other site"
/db_xref="CDD:29605"
gene complement(407123..408040)
/gene="argF"
/locus_tag="Avi_0479"
/db_xref="GeneID:7388481"
CDS complement(407123..408040)
/gene="argF"
/locus_tag="Avi_0479"
/note="catalyzes the formation of L-citrulline from
carbamoyl phosphate and L-ornithine in arginine
biosynthesis and degradation"
/codon_start=1
/transl_table=11
/product="ornithine carbamoyltransferase"
/protein_id="YP_002548340.1"
/db_xref="GI:222147383"
/db_xref="GeneID:7388481"
/translation="MASPKHFLDLSAMTSEDLHSILSDAHQRKTRTRAGTADKPLAGK
MLAMIFEKPSTRTRVSFDVGMRQLGGETLFLSGTEMQLGRAETIGDTAKVLSRYVDAI
MIRTTDHNRLLELAEHATVPVINALTDLTHPCQIMADIMTIEEHRGPIRGKTLAWTGD
GNNVLHSLVEGAARFGYRMNMAVPMGSEPEDQILNWARNNGGEIMLCHDADRAVTGAD
AVITDTWVSMNLEHKARGHNVFQPFQVNPALMKQAKPDALFMHCLPAHRGEEVTDEVI
DGPQSVVFDEAENRLHAQKSILAWCLGAV"
misc_feature complement(407135..408040)
/gene="argF"
/locus_tag="Avi_0479"
/note="ornithine carbamoyltransferase; Provisional;
Region: PRK00779"
/db_xref="CDD:179122"
misc_feature complement(407603..408028)
/gene="argF"
/locus_tag="Avi_0479"
/note="Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain; Region: OTCace_N; pfam02729"
/db_xref="CDD:202362"
misc_feature complement(407138..407587)
/gene="argF"
/locus_tag="Avi_0479"
/note="Aspartate/ornithine carbamoyltransferase, Asp/Orn
binding domain; Region: OTCace; pfam00185"
/db_xref="CDD:201065"
gene complement(408056..409264)
/gene="argD"
/locus_tag="Avi_0481"
/db_xref="GeneID:7388482"
CDS complement(408056..409264)
/gene="argD"
/locus_tag="Avi_0481"
/note="DapATase; functions in arginine biosynthetic
pathway; catalyzes the formation of N-acetyl-L-glutamate
5-semialdehyde from 2-oxoglutarate and
N(2)-acetyl-L-ornithine"
/codon_start=1
/transl_table=11
/product="acetylornithine transaminase"
/protein_id="YP_002548341.1"
/db_xref="GI:222147384"
/db_xref="GeneID:7388482"
/translation="MAQTSTPLFNTFSRAPLRFERGEGPWLYTETGEQYLDFAGGVAV
TSCGHSHPHLVEALKSQAEKVWHLSNLYEVPGQERLAARLVEATFADKVFFTNSGAEA
LECAIKTARRYHYSKGHPEKFHIITFEGAFHGRTIATIAAGGQEKYLEGFGPKAPGFD
QVPFGDLDALKAAITDSTAALLIEPIQGEGGIRVVGSEFLRELRAICDEKGLLLILDE
VQSGVGRTGKFFAHEWAGLTPDIMAVAKGIGGGFPFGACLATEEAASGMTAGVHGTTY
GGNPLAMAVGNAVLDLVLADDFLQNVRDVALIFRQGLAGLKDRFPGVIEDVRGEGLML
GIKAAVPSSELLHAMRHEHILGVPAGDNVIRLLPPLTLTAEQAREGLKRIEQAAEALS
AQAALKIAQA"
misc_feature complement(408116..409255)
/gene="argD"
/locus_tag="Avi_0481"
/note="acetylornithine transaminase protein; Provisional;
Region: argD; PRK01278"
/db_xref="CDD:179270"
misc_feature complement(408119..409234)
/gene="argD"
/locus_tag="Avi_0481"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature complement(order(408527..408529,408605..408610,
408614..408616,408713..408715,408860..408862,
408866..408871,408965..408973))
/gene="argD"
/locus_tag="Avi_0481"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature complement(order(408527..408529,408605..408607,
408614..408616,408713..408715,408866..408871,
408965..408970))
/gene="argD"
/locus_tag="Avi_0481"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature complement(408527..408529)
/gene="argD"
/locus_tag="Avi_0481"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene complement(409315..409434)
/locus_tag="Avi_0482"
/db_xref="GeneID:7388483"
CDS complement(409315..409434)
/locus_tag="Avi_0482"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548342.1"
/db_xref="GI:222147385"
/db_xref="GeneID:7388483"
/translation="MSEQCLCPDVLLTTLAEAGIVQMPPKGGIFDFFHRFFGG"
gene 409694..410245
/locus_tag="Avi_0484"
/db_xref="GeneID:7388484"
CDS 409694..410245
/locus_tag="Avi_0484"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548343.1"
/db_xref="GI:222147386"
/db_xref="GeneID:7388484"
/translation="MNWTDERVERLTKLWAEGLSASQIATQLGGVSRNAVIGKVHRLC
LPGRAKAGGPAATPARTPKRPAPSTPRAPSFAARTPSSAPRPAARTAAATALNEDLDM
DVTENMAALPVLNTTILPASRRLSLTDLTERTCKWPVGDPMTDEFHFCGCDSQDNSPY
CKYHAKLAYQPVNERRRAAANAR"
misc_feature 409694..410215
/locus_tag="Avi_0484"
/note="GcrA cell cycle regulator; Region: GcrA; cl11564"
/db_xref="CDD:142769"
gene complement(410350..411033)
/gene="phoB"
/locus_tag="Avi_0485"
/db_xref="GeneID:7388485"
CDS complement(410350..411033)
/gene="phoB"
/locus_tag="Avi_0485"
/codon_start=1
/transl_table=11
/product="phosphate regulon transcriptional regulatory
protein PhoB"
/protein_id="YP_002548344.1"
/db_xref="GI:222147387"
/db_xref="GeneID:7388485"
/translation="MLPKIAVVEDEEALSVLLRYNLESEGYEVETILRGDEAELRLQE
RVPDLLILDWMLPGVSGIELCRRLRMRPDTERLPIIMLTARGEESERVRGLATGADDY
VVKPFSTPELMARVKAMLRRAKPEVLSSLLRCGDIELDRETHRVHRKSREVRLGPTEF
RLLEFLMTSPGRVFSRSQLLDGVWGHDIYVDERTVDVHVGRLRKALNFSNMQDVIRTV
RGAGYSMEA"
misc_feature complement(410362..411033)
/gene="phoB"
/locus_tag="Avi_0485"
/note="phosphate regulon transcriptional regulatory
protein PhoB; Region: PhoB; TIGR02154"
/db_xref="CDD:131209"
misc_feature complement(410674..411015)
/gene="phoB"
/locus_tag="Avi_0485"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(410716..410721,410728..410730,
410785..410787,410851..410853,410875..410877,
411004..411009))
/gene="phoB"
/locus_tag="Avi_0485"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(410875..410877)
/gene="phoB"
/locus_tag="Avi_0485"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(410851..410859,410863..410868))
/gene="phoB"
/locus_tag="Avi_0485"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(410713..410721)
/gene="phoB"
/locus_tag="Avi_0485"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(410359..410640)
/gene="phoB"
/locus_tag="Avi_0485"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature complement(order(410368..410370,410383..410385,
410416..410421,410443..410445,410452..410454,
410506..410511,410566..410568))
/gene="phoB"
/locus_tag="Avi_0485"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene complement(411394..412101)
/gene="phoU"
/locus_tag="Avi_0488"
/db_xref="GeneID:7388486"
CDS complement(411394..412101)
/gene="phoU"
/locus_tag="Avi_0488"
/codon_start=1
/transl_table=11
/product="phosphate transport system regulatory protein
PhoU"
/protein_id="YP_002548345.1"
/db_xref="GI:222147388"
/db_xref="GeneID:7388486"
/translation="MTAHIYTAFDEELKYLMRRISEMGGLAEQMVGESVRALVNSDAA
LAQKVISDDVIMDNAEREVGDKAIVTIAKRQPMAADLREIIGALRIASDLERVGDLGK
NNAKRVMAVQGTGVPRKLARGIEHLSELAMTQLKEVLDVYTTRSAEKAKSIRDRDEEI
DAIYTSLFRELLTYMMEDPRNITTCTHLLFCAKNIERIGDHATNIAETIYYMATGAQP
EGERPKDDTTTAFGVAD"
misc_feature complement(411448..412083)
/gene="phoU"
/locus_tag="Avi_0488"
/note="phosphate transport system regulatory protein PhoU;
Region: phoU_full; TIGR02135"
/db_xref="CDD:162721"
misc_feature complement(411778..412044)
/gene="phoU"
/locus_tag="Avi_0488"
/note="PhoU domain; Region: PhoU; pfam01895"
/db_xref="CDD:202032"
misc_feature complement(411475..411732)
/gene="phoU"
/locus_tag="Avi_0488"
/note="PhoU domain; Region: PhoU; pfam01895"
/db_xref="CDD:202032"
gene complement(412145..412960)
/gene="pstB"
/locus_tag="Avi_0489"
/db_xref="GeneID:7388487"
CDS complement(412145..412960)
/gene="pstB"
/locus_tag="Avi_0489"
/note="ATP-binding protein; PstABCS is an ATP dependent
phosphate uptake system which is responsible for inorganic
phosphate uptake during phosphate starvation"
/codon_start=1
/transl_table=11
/product="phosphate transporter ATP-binding protein"
/protein_id="YP_002548346.1"
/db_xref="GI:222147389"
/db_xref="GeneID:7388487"
/translation="MNMMSESAVEKALDQKMTEVNTKMVGKDVSVYYGEKRALFDVNL
NVRENTVTALIGPSGCGKSTFLRTLNRMNDTIDHCRVTGLITLDGMDIYDPSIDVVEL
RARVGMVFQKPNPFPKSIYENIAYGPRIHGLARNKADMDQIVEKSLQRAGLWNEAKDR
LQEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIHELRANFT
IVIVTHSMQQAARVSQRTAMFHLGQLVEENDTDKMFTNPDDQRTQDYIMGRFG"
misc_feature complement(412148..412948)
/gene="pstB"
/locus_tag="Avi_0489"
/note="phosphate transporter ATP-binding protein;
Provisional; Region: PRK14235"
/db_xref="CDD:184581"
misc_feature complement(412205..412882)
/gene="pstB"
/locus_tag="Avi_0489"
/note="Phosphate uptake is of fundamental importance in
the cell physiology of bacteria because phosphate is
required as a nutrient. The Pst system of E. coli
comprises four distinct subunits encoded by the pstS,
pstA, pstB, and pstC genes. The PstS protein...; Region:
ABC_PstB_phosphate_transporter; cd03260"
/db_xref="CDD:73019"
misc_feature complement(412772..412795)
/gene="pstB"
/locus_tag="Avi_0489"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73019"
misc_feature complement(order(412289..412291,412382..412387,
412628..412630,412769..412777,412781..412786))
/gene="pstB"
/locus_tag="Avi_0489"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73019"
misc_feature complement(412628..412639)
/gene="pstB"
/locus_tag="Avi_0489"
/note="Q-loop/lid; other site"
/db_xref="CDD:73019"
misc_feature complement(412430..412459)
/gene="pstB"
/locus_tag="Avi_0489"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73019"
misc_feature complement(412382..412399)
/gene="pstB"
/locus_tag="Avi_0489"
/note="Walker B; other site"
/db_xref="CDD:73019"
misc_feature complement(412364..412375)
/gene="pstB"
/locus_tag="Avi_0489"
/note="D-loop; other site"
/db_xref="CDD:73019"
misc_feature complement(412283..412303)
/gene="pstB"
/locus_tag="Avi_0489"
/note="H-loop/switch region; other site"
/db_xref="CDD:73019"
gene complement(413059..414396)
/gene="pstA"
/locus_tag="Avi_0491"
/db_xref="GeneID:7388488"
CDS complement(413059..414396)
/gene="pstA"
/locus_tag="Avi_0491"
/codon_start=1
/transl_table=11
/product="phosphate ABC transporter permease"
/protein_id="YP_002548347.1"
/db_xref="GI:222147390"
/db_xref="GeneID:7388488"
/translation="MSETLSPAAAGHGAGALAPVSRPRRDIGIKRRYAAERRFRAYGI
VAISFGLLFLLLLLTSVVSKGYTAFLQTTITVPVEFSEKLIDPSNQRATNPDVLVAAN
YPVLVRNALAAKLKIDTSNRPAMKQLTEMVSDNVRVQLRNMVVADPLLVGKTVPVSVL
ASATIDTAFKGQFDLTVDESSRKISDQQIGWMNTLAESGALAKSFNTGIFVNGASSRP
EAAGVGVALIGTAYMMLTVLILALPIGVATSIYLEEFAPKNRWTDLIEVNINNLAAVP
SIVFGLLGLAVFINFAGLPRSASLVGGLVLTLMTLPTIIIATRAALKAVPPSIRAAAL
GLGASKMQTVFHHVLPLAMPGVLTGTIIGLAHALGETAPLLLIGMVAFVADYPGTPLD
PSTALPVQIYMWANEAERAFVERTSGAIIILLIFLLIMNVGAILLRRRFERRW"
misc_feature complement(413860..414324)
/gene="pstA"
/locus_tag="Avi_0491"
/note="Domain of unknown function (DUF3333); Region:
DUF3333; pfam11812"
/db_xref="CDD:152248"
misc_feature complement(413062..413934)
/gene="pstA"
/locus_tag="Avi_0491"
/note="ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism];
Region: PstA; COG0581"
/db_xref="CDD:30926"
misc_feature complement(<413263..413718)
/gene="pstA"
/locus_tag="Avi_0491"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(413269..413274,413281..413292,
413311..413313,413320..413325,413365..413367,
413416..413418,413425..413430,413440..413442,
413446..413451,413458..413460,413464..413466,
413470..413475,413542..413544,413548..413553,
413560..413589,413593..413604,413638..413640,
413653..413658,413665..413670))
/gene="pstA"
/locus_tag="Avi_0491"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(413275..413292,413542..413586))
/gene="pstA"
/locus_tag="Avi_0491"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(413272..413274,413488..413490,
413542..413544))
/gene="pstA"
/locus_tag="Avi_0491"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(413344..413346,413356..413361,
413377..413415))
/gene="pstA"
/locus_tag="Avi_0491"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(414393..415880)
/gene="pstC"
/locus_tag="Avi_0493"
/db_xref="GeneID:7388489"
CDS complement(414393..415880)
/gene="pstC"
/locus_tag="Avi_0493"
/codon_start=1
/transl_table=11
/product="phosphate ABC transporter permease"
/protein_id="YP_002548348.1"
/db_xref="GI:222147391"
/db_xref="GeneID:7388489"
/translation="MSTSILIFIVIAIGIIGYLLGSSRAQSLAQGRASALHSRYGYHG
SFVSILAVVPAFLVLGLWMAIAPSLIETRVRDAMPDAVKAQAGATQNLNYGTIGAIAR
GLKSLDDDQLAKLKSADATTARTMLAEQGVPLAGEPEPYMIVAAEALNGMRAINDLAL
TIVVIATSLAGALFGLRLIAPRFRARNRVEQAIQAALVICSSIAILTTVGIIMSMLTE
ATHFFREVPAWRFFFGTVWDPRFAAAGATDTGGQFGLIPLLLGTLYIGVVAMLFAVPV
GLFAAIYMAEYASPRLRSITKPLLEVLAGIPTIVYGFFALTSVGPFLRDISAKINGIA
TGDFVSFIQAQSVLTAGFVMGIMLIPYVSSLSDDIITAVPRSLRDGSLGLGATRSETV
KRVILPAALPGIVGALLMTASRAIGETMIVVLAAGVAARIQLNPFEPMTTVTVKIVNQ
LTGDLEFTSPQTLVAFALGITLFAITLCLNIYALYIVRKYREQYE"
misc_feature complement(415359..415811)
/gene="pstC"
/locus_tag="Avi_0493"
/note="Phosphate ATP-binding cassette transporter; Region:
DUF3708; pfam12501"
/db_xref="CDD:204943"
misc_feature complement(414408..415313)
/gene="pstC"
/locus_tag="Avi_0493"
/note="phosphate ABC transporter, permease protein PstC;
Region: phosphate_pstC; TIGR02138"
/db_xref="CDD:162724"
misc_feature complement(414585..415106)
/gene="pstC"
/locus_tag="Avi_0493"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(414609..414614,414621..414632,
414651..414653,414660..414665,414705..414707,
414756..414758,414765..414770,414780..414782,
414786..414791,414798..414800,414804..414806,
414810..414815,414933..414935,414939..414944,
414951..414980,414984..414995,415026..415028,
415041..415046,415053..415058))
/gene="pstC"
/locus_tag="Avi_0493"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(414615..414632,414933..414977))
/gene="pstC"
/locus_tag="Avi_0493"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(414612..414614,414828..414830,
414933..414935))
/gene="pstC"
/locus_tag="Avi_0493"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(414684..414686,414696..414701,
414717..414755))
/gene="pstC"
/locus_tag="Avi_0493"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(416008..417033)
/locus_tag="Avi_0495"
/db_xref="GeneID:7388490"
CDS complement(416008..417033)
/locus_tag="Avi_0495"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(phosphate)"
/protein_id="YP_002548349.1"
/db_xref="GI:222147392"
/db_xref="GeneID:7388490"
/translation="MNMLKLSVAALVASVAFAGAAAARDQVQIAGSSTVLPYAKIVAE
TFGETFTKFKTPVVESGGTGAGLKEFCKGVGPETIDIANASRPINKSEAEACKAAGVT
DIQEVKFGYDGIVFAVDSSNKDLALVPTDLYKGLAAEVVVDGKLVANPYKKWSEVNKS
LPDTDIMAFIPGEKHGTREVFEVNVLQQGCKDAGALDVIKAAVGEKDAPKKCIAVRKD
GKAVDIDGDYSETLARIAANKTAIGVFGLSFYENNADKLKVATVSGVKPSVETVATGK
YPVSRPLFFYVKKAHLGVIPGMKEYVDFFLSEQMIGTDGPLANYGLVPAPDKEREEFR
AKFTAGK"
misc_feature complement(416107..416964)
/locus_tag="Avi_0495"
/note="PBP superfamily domain; Region: PBP_like_2;
pfam12849"
/db_xref="CDD:205106"
gene complement(417227..418486)
/gene="phoR"
/locus_tag="Avi_0496"
/db_xref="GeneID:7388491"
CDS complement(417227..418486)
/gene="phoR"
/locus_tag="Avi_0496"
/codon_start=1
/transl_table=11
/product="phosphate regulon sensor kinase PhoR"
/protein_id="YP_002548350.1"
/db_xref="GI:222147393"
/db_xref="GeneID:7388491"
/translation="MKQLFPSWRRFGERLRDRWDFILLAILVSGSSVLAGADSEFGVV
LLLFSLMVILLYKGAEDKDPPVHFPVAASPVLPHGEEVEGLVQATITAIDLPCVVFGS
DGGVVFQNGAAEKAFGKLETGMHISARWRSPGILDMVRETVGNGLPNQIEHSEVLPSE
RVFAVRVAPLSLPQLKRDSALFVMTFRDISELRRIDRMRSDFVANASHELRTPLASLR
GFIETLLGPARNDLKAQERFLGIMLDQANRMSRLVDDLLSLSRLELKAHLAPDQKVSL
QPVLSHVRDSLTPLAAELDVDLRLHLPQDSIEVTGDRDELIQVFENLIENACKYGQEG
KQVDVFLRQKTSGVEVSVVDKGPGVPAEDVPRLTERFYRVSVADSRSKKGTGLGLAIV
KHILTRHRARLIIRSELGQGTDFTVRF"
misc_feature complement(417230..418231)
/gene="phoR"
/locus_tag="Avi_0496"
/note="phosphate regulon sensor kinase PhoR; Region:
phoR_proteo; TIGR02966"
/db_xref="CDD:163090"
misc_feature complement(417740..417901)
/gene="phoR"
/locus_tag="Avi_0496"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(417740..417742,417752..417754,
417761..417763,417773..417775,417827..417829,
417836..417838,417848..417850,417857..417859,
417869..417871,417881..417883))
/gene="phoR"
/locus_tag="Avi_0496"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(417863..417865)
/gene="phoR"
/locus_tag="Avi_0496"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(417230..417541)
/gene="phoR"
/locus_tag="Avi_0496"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(417242..417244,417248..417253,
417266..417268,417272..417274,417320..417331,
417410..417415,417419..417421,417425..417427,
417431..417433,417500..417502,417509..417511,
417521..417523))
/gene="phoR"
/locus_tag="Avi_0496"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(417509..417511)
/gene="phoR"
/locus_tag="Avi_0496"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(417323..417325,417329..417331,
417413..417415,417419..417421))
/gene="phoR"
/locus_tag="Avi_0496"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 418697..419581
/locus_tag="Avi_0497"
/db_xref="GeneID:7388492"
CDS 418697..419581
/locus_tag="Avi_0497"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548351.1"
/db_xref="GI:222147394"
/db_xref="GeneID:7388492"
/translation="MDDEQQAGSRGVTLRIRGELRAFDIDDPVLPDWVEKEALSSGGH
PYDKKLKREVYEEELKKLQIELVKVQYWLQSTRKRVMALFEGRDAAGKGGTIHSILEY
MNPRSVHNVALTKPSETELGQWYFQRYITHFPGGGDMSLFDRSWYNRAVVEPVMGFCT
PDQYEHFLEQAPRFEKLIGQEGIYFFKFWLDIGQEMQIKRFHDRRHDPLKVWKLSPMD
IAALDKWGDYTEKRDRMLKETHTKHAPWIVAKANDKRRAHLNVIRHMLLSLDYEGRDI
KAIGEIDKKIVAEAPDIL"
misc_feature 418841..419530
/locus_tag="Avi_0497"
/note="polyphosphate kinase 2, PA0141 family; Region:
PPK2_P_aer; TIGR03707"
/db_xref="CDD:188377"
gene complement(419688..420977)
/locus_tag="Avi_0499"
/db_xref="GeneID:7388493"
CDS complement(419688..420977)
/locus_tag="Avi_0499"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548352.1"
/db_xref="GI:222147395"
/db_xref="GeneID:7388493"
/translation="MNVERSRVSGLETAIRSALDRSERSRAEVRARIYQSARQALEAG
LKKQNVNDPETVAEQRHRLEATIHAIEQQERARLKAEAAVEPVSRAPVPPPTSPPLST
STPPRGPAPSVSADANAPGDDSASLSFGVDRDHGRPAEPSLDLDDVRAERHDRADPAG
MSSFASFSARPKSAEPESAEDEYDEEPVRGMRAEPVAKPRRRRGVLSRLLISVTLLSS
IGIAAWWVYSTGLLLSPDQRQTGAPSPTPTVSSEDFNGDQPTDQSGGEAANEPKTIDP
QRGFSNDWIEAFQPGDASKIKARPNATADVVGASDGQAVHIVSRSTDMDGTAAIEIAP
DLLRQMAGGTSTIALTVQSFGEKPVQFSLSCAFDRLGDCARHRFTANPEKADLLFRVT
LPNGIAPNAPGQLLINADISGQGNGINLYAVRVLPGK"
gene 421269..422234
/locus_tag="Avi_0500"
/db_xref="GeneID:7388494"
CDS 421269..422234
/locus_tag="Avi_0500"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548353.1"
/db_xref="GI:222147396"
/db_xref="GeneID:7388494"
/translation="MALPDILSRHLRLPVIASPLFIISHPRLTLAQCKAGVVGAFPAL
NARPEAQLDEWLDEITQELAAHDRAHPERPAAPFAVNQIVHGSNKRLEHDLGMCVKYK
VPIVISSLGAVPEVNAAIHSYGGIVLHDVINNRHAHSAIRKGADGLIAVAAGAGGHAG
TLSPFALLQEIREWFDGPLLLAGSISTGGAILAAQAAGADMAYIGSPFIATQEARAPD
AYKQALVEASATDIVYSNYFTGIHGNYLRSSIVASGLDPDKLPEADPSKMDFGSAVTG
AKAWKDIWGCGQGIGAIKAVEPVAALVDRLDTEYRAARDRICGKV"
misc_feature 421269..422216
/locus_tag="Avi_0500"
/note="Dioxygenases related to 2-nitropropane dioxygenase
[General function prediction only]; Region: COG2070"
/db_xref="CDD:32253"
misc_feature 421299..422006
/locus_tag="Avi_0500"
/note="2-Nitropropane dioxygenase (NPD), one of the
nitroalkane oxidizing enzyme families, catalyzes oxidative
denitrification of nitroalkanes to their corresponding
carbonyl compounds and nitrites. NDP is a member of the
NAD(P)H-dependent flavin oxidoreductase...; Region:
NPD_like; cd04730"
/db_xref="CDD:73392"
misc_feature order(421323..421328,421515..421517,421593..421595,
421656..421658,421719..421721,421731..421736,
421812..421820,421875..421886)
/locus_tag="Avi_0500"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73392"
misc_feature 421737..421742
/locus_tag="Avi_0500"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73392"
misc_feature 421740..421742
/locus_tag="Avi_0500"
/note="putative catalytic residue [active]"
/db_xref="CDD:73392"
gene 422318..422393
/locus_tag="Avi_4555"
/db_xref="GeneID:7388495"
tRNA 422318..422393
/locus_tag="Avi_4555"
/product="tRNA-Thr"
/db_xref="GeneID:7388495"
gene 422779..423891
/locus_tag="Avi_0501"
/db_xref="GeneID:7387995"
CDS 422779..423891
/locus_tag="Avi_0501"
/codon_start=1
/transl_table=11
/product="ABC transporter nucleotide binding/ATPase
(proline/glycine/betaine)"
/protein_id="YP_002548354.1"
/db_xref="GI:222147397"
/db_xref="GeneID:7387995"
/translation="MITFDQVSKHYGDATAAVNSLSLVAPTGKLTILVGPSGCGKTTS
LRMINRLITPSSGSILLDGEQTGRMDVALLRRRIGYVIQHAGLFPHRTVVQNIATTAR
LNGAPKQQALRTAHELLERVGLTSAFADRYPWQLSGGQQQRVGVARALASDPKFMLMD
EPFSAVDPVVRGQLQDEFLRLQRDIGKTIIMVTHDIDEALKLGDQVAVLRSGGTLAQI
ATPQELLARPADAFVADFIGRDRGYRFLSFAEFGSTVPLGVEPTATFGATPEALRHAA
TDRWVLVTDAANRPIGWADAPGLQQPLREGDLNLSGTLAPEGSSLRHLLDAALSSPSG
RGVVVSASGELVGTVTLSNVVAAIEGARAGQFGMQP"
misc_feature 422779..423654
/locus_tag="Avi_0501"
/note="ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism];
Region: OpuBA; COG1125"
/db_xref="CDD:31322"
misc_feature 422782..423507
/locus_tag="Avi_0501"
/note="OpuCA is a the ATP binding component of a bacterial
solute transporter that serves a protective role to cells
growing in a hyperosmolar environment. ABC (ATP-binding
cassette) transporter nucleotide-binding domain; ABC
transporters are a large family of...; Region:
ABC_OpuCA_Osmoprotection; cd03295"
/db_xref="CDD:73054"
misc_feature 422881..422904
/locus_tag="Avi_0501"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73054"
misc_feature order(422890..422895,422899..422907,423025..423027,
423256..423261,423358..423360)
/locus_tag="Avi_0501"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73054"
misc_feature 423016..423027
/locus_tag="Avi_0501"
/note="Q-loop/lid; other site"
/db_xref="CDD:73054"
misc_feature 423184..423213
/locus_tag="Avi_0501"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73054"
misc_feature 423244..423261
/locus_tag="Avi_0501"
/note="Walker B; other site"
/db_xref="CDD:73054"
misc_feature 423268..423279
/locus_tag="Avi_0501"
/note="D-loop; other site"
/db_xref="CDD:73054"
misc_feature 423346..423366
/locus_tag="Avi_0501"
/note="H-loop/switch region; other site"
/db_xref="CDD:73054"
gene 423888..424538
/locus_tag="Avi_0502"
/db_xref="GeneID:7388496"
CDS 423888..424538
/locus_tag="Avi_0502"
/codon_start=1
/transl_table=11
/product="glycine/betaine ABC transporter permease"
/protein_id="YP_002548355.1"
/db_xref="GI:222147398"
/db_xref="GeneID:7388496"
/translation="MRFDWLYNESGRIAELFIWHLSLSVIPVLIGLLLALPLGWFAQR
AGVFRSTLLGAAGLLYTIPSLALFVLLPLVLGTRILDPLNVVVALTVYALALLVRTVS
DGLDSISPDVLQAANAMGYRRAARLLTVELPLAVPVIAAGLRVAVVSNVSIVSVAALV
GTPQLGLLFTQGLQLQFLTPIIAGIVLCVLLAVLLDGLVLFIAHRLTPWQPGRMPR"
misc_feature 423894..>424319
/locus_tag="Avi_0502"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cl00427"
/db_xref="CDD:211439"
gene 424535..425212
/locus_tag="Avi_0503"
/db_xref="GeneID:7388497"
CDS 424535..425212
/locus_tag="Avi_0503"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_002548356.1"
/db_xref="GI:222147399"
/db_xref="GeneID:7388497"
/translation="MIDWFSNPAHWTGDGGVIALVIQHLAYSGAALLLACLIGLPVGL
YVGHTGRGVVFIAGLANALRSLPSLGLIVLLVILFGPVFSSDMAFIVPSLIVLVLLAV
PPIMTGSYAGIAAVDPAAVDAARGMGKCPLDILFDVELPCALPLIFSGLRSATLQIIS
TATIAAYVSLGGLGRLIIDGRAQHDYYQMAAGAVLVGALALTVDLLIGVISRFTVSPG
LTRRLKR"
misc_feature <424856..>425038
/locus_tag="Avi_0503"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cl00427"
/db_xref="CDD:211439"
gene 425276..426190
/locus_tag="Avi_0504"
/db_xref="GeneID:7388498"
CDS 425276..426190
/locus_tag="Avi_0504"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate binding protein
(proline/glycine/betaine)"
/protein_id="YP_002548357.1"
/db_xref="GI:222147400"
/db_xref="GeneID:7388498"
/translation="MAFRIITAVSAFALMTLSAASALAAGDPLAAPPTERSDTKTIII
GSADFPESQLLATLYAKALTAKGVAVETKLNIGSREVYMPALLDGSIDLLPEYAGAAL
SYLDKKATAHTPDDVAAALKAALPKGVSMLTPSAAQDSDGVAVTRATAEKYKLKTIAD
LAPVASEFVLGGPPEWKTRKEGIIGLKEVYGLEFKSLKALDVGGPLTLSALVNGQIQA
ANLFSTDPAIATNDLVMLEDVKNLFPAQNVVPVIATAKVSETVAKTLDAVSAALTTKD
LVVMNGRLGNHDSFDVVAGDWLAQHKLN"
misc_feature 425384..426178
/locus_tag="Avi_0504"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
misc_feature 425393..426175
/locus_tag="Avi_0504"
/note="Substrate binding domain of ABC-type glycine
betaine transport system; Region: OpuAC; pfam04069"
/db_xref="CDD:202876"
gene 426190..427095
/gene="hutC"
/locus_tag="Avi_0505"
/db_xref="GeneID:7388499"
CDS 426190..427095
/gene="hutC"
/locus_tag="Avi_0505"
/codon_start=1
/transl_table=11
/product="histidine utilization repressor"
/protein_id="YP_002548358.1"
/db_xref="GI:222147401"
/db_xref="GeneID:7388499"
/translation="MWGWQASCIRCSPANARGLPATGRLISRYVCLSTTSWLWIVTQN
FSGNVMPLVQKDAEIGQEGHPPATLLSATPLYVKLKDYVRSRVETGEWKIGQRVPSEN
ELVGILGVSRMTANRALRELADEGLVVRLRGKGSFVATRKRTSQFQSVPNIADEIRRN
GGIHSARVILLQMEACGEELAEALGVSPADPVAHSIIMHAEDGLPMQIEDRFVNPGCA
PDYLYQDFNAVTPNGYLTEVAPIVKAEQHIESVNAQAWECKLLAIPKSEPCLLVRRRT
WSVDGIVSSVRLLYPGSRYRLYSST"
misc_feature 426409..427089
/gene="hutC"
/locus_tag="Avi_0505"
/note="histidine utilization repressor, proteobacterial;
Region: his_ut_repres; TIGR02018"
/db_xref="CDD:188194"
misc_feature 426409..426606
/gene="hutC"
/locus_tag="Avi_0505"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(426409..426411,426415..426417,426484..426486,
426490..426495,426517..426531,426535..426540,
426547..426549,426577..426582,426586..426597)
/gene="hutC"
/locus_tag="Avi_0505"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 426670..427077
/gene="hutC"
/locus_tag="Avi_0505"
/note="UTRA domain; Region: UTRA; pfam07702"
/db_xref="CDD:203732"
gene 427224..428711
/gene="hutH"
/locus_tag="Avi_0506"
/db_xref="GeneID:7388500"
CDS 427224..428711
/gene="hutH"
/locus_tag="Avi_0506"
/codon_start=1
/transl_table=11
/product="histidine ammonia-lyase"
/protein_id="YP_002548359.1"
/db_xref="GI:222147402"
/db_xref="GeneID:7388500"
/translation="MSVFLDDGLDWRAVARVGEGEVLSLSDNAYRRIDRASQILDRIV
ESGVRAYGITTGIGALSDTVVDRATQGRLSRGIVLSHACGIGPLLDAREVRAIMAAQI
ANFAHGHSGVRRDIVSHLLTFLERDCIPDVPSRGSAGYLTHNAHTGLVLIGEGQARVG
GHPFNGREALAQIGLQPLVLGAKEGLSLVNGTACATGLSSVALARAAHLLDWADAIAA
LTLEAAGCQMDAFNEAVLALRPSKGIAAVGAALRARLQGSGLIAAALGRRTQDALSLR
AVPHAHGAARDVFDACAGIVDRELASATDNPAILGTPEQPIVSSQAHAVASAQGQAAD
SLAIAIAQIAAMSERRIDRLVNPLVSGLPPFLATDAGSHSGLMIAQYTAAALVGDNRR
LAAPASTDGGLTSGLQEDFLAHPTAAANKLLAVLDNAEYILAIEWMAGAQAHDFLAGA
GQRAAGTNALYSMVREHLPPYSDDRPLSGDIEKVRALLREQAPPH"
misc_feature 427245..428564
/gene="hutH"
/locus_tag="Avi_0506"
/note="Phenylalanine ammonia-lyase (PAL) and histidine
ammonia-lyase (HAL); Region: PAL-HAL; cd00332"
/db_xref="CDD:176460"
misc_feature order(427374..427382,427386..427388,427392..427394,
427443..427445,427452..427454,427767..427781,
427791..427793,428040..428042,428049..428051,
428139..428141,428181..428183)
/gene="hutH"
/locus_tag="Avi_0506"
/note="active sites [active]"
/db_xref="CDD:176460"
misc_feature order(427389..427394,427449..427451,427458..427481,
427542..427544,427626..427631,427659..427661,
427668..427670,427923..427928,427935..427940,
427944..427946,427953..427955,428031..428033,
428037..428045,428049..428054,428061..428066,
428082..428087,428094..428096,428103..428108,
428115..428120,428127..428132,428145..428153,
428172..428174,428178..428198,428202..428207,
428214..428216,428226..428228,428247..428249,
428256..428258,428268..428270,428280..428282,
428289..428291,428298..428300,428334..428339,
428343..428348,428352..428363,428367..428369,
428373..428390,428394..428405,428436..428456,
428463..428465,428481..428486,428493..428495,
428502..428507)
/gene="hutH"
/locus_tag="Avi_0506"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:176460"
gene 428941..429258
/locus_tag="Avi_0507"
/db_xref="GeneID:7388501"
CDS 428941..429258
/locus_tag="Avi_0507"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548360.1"
/db_xref="GI:222147403"
/db_xref="GeneID:7388501"
/translation="MPRGDKSAYTDKQKRKAEHIEESYENRGVPEKEAQSRAWATVNK
ESGGGNKSGSGRGHPESHASSEKGGRKGGKASAARSKEERSASAKKAAATRKHNEQHA
HSH"
gene complement(429371..430603)
/locus_tag="Avi_0508"
/db_xref="GeneID:7388502"
CDS complement(429371..430603)
/locus_tag="Avi_0508"
/codon_start=1
/transl_table=11
/product="aminotransferase"
/protein_id="YP_002548361.1"
/db_xref="GI:222147404"
/db_xref="GeneID:7388502"
/translation="MQHLVCGISSGGREVPDLDGKRFLVANAQGPYVWDADGRRYVDT
ALGFGATFLGHTDPVVTEAIREALSKGSMPAYAHALEEEAAAALAAHSQDLTKVIFLN
SGSEAVHLACRTARALTGRQKIVKMAAGYDGWFDDVAFGNAGAPEATMAANDRPSNGN
TLLLRFNDRQDVELLFEECDDIAAIVLEPMMANAGCILADPGYLQHVASIAHQHGALV
IMDEVLMGFRLYGGLASHLMGIRPDLATVGKAIGNGVAVAALLGTPEVMAAFEDRRVS
RAGTYNGNPVACAAVKAAMSVIDTVDYGALEKAGTDLQTHAIHVFSKAGIDICASGYG
TVFTLWRGKKPPSTYQEAAQLADKDFTAKLHTELRRNGVMSMYNQFGRYYLSARHEEE
ALGLWAEAFEKAARSVAA"
misc_feature complement(429374..430600)
/locus_tag="Avi_0508"
/note="Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism]; Region: HemL; COG0001"
/db_xref="CDD:30350"
misc_feature complement(<429710..430549)
/locus_tag="Avi_0508"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature complement(order(429857..429862,429932..429934,
429941..429943,430040..430042,430280..430282,
430289..430294))
/locus_tag="Avi_0508"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature complement(429857..429859)
/locus_tag="Avi_0508"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene complement(430606..431892)
/locus_tag="Avi_0509"
/db_xref="GeneID:7388503"
CDS complement(430606..431892)
/locus_tag="Avi_0509"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002548362.1"
/db_xref="GI:222147405"
/db_xref="GeneID:7388503"
/translation="MTVAVLILSFSFLLLIGVPIAWCMGVASLLTIYVGHLGLPFAWF
AQQTIRGADAITLAAIPLFLFAGELMNRGGLTARIMRVAEHVFGRITGGLGLVNVATA
LVYGGISGSATADTGAVGSIMIPAMAERGYPKAFAAAVTAASGTLGIIGPQSVILILY
GVLTNTSIGGLLVAALLPGLFIAVTFMVTSYIVAKRHNFPRNETPAQWGEIGRDALGA
LPALLMPVLVLGSIIGGIATATEASALAVVYSFLIGIFVYRELPLRSLYSAASAAVAT
TGVIMMIMALATPFGWILTVEQVPANAAAWITGLHTTPLVTIILVLVLLKVVGFWLDL
GPALIILAPILVPIALAAGMTPYQTGIVFTMTLGIGLFTPPIGTNIFVVCNVAKIDMW
SVSKWLVPYWIASVVCVAALVAFPILTEWLPSLFGV"
misc_feature complement(430645..431844)
/locus_tag="Avi_0509"
/note="DctM-like transporters; Region: DctM; pfam06808"
/db_xref="CDD:148424"
misc_feature complement(430612..431742)
/locus_tag="Avi_0509"
/note="TRAP-type C4-dicarboxylate transport system, large
permease component [Carbohydrate transport and
metabolism]; Region: DctQ; COG1593"
/db_xref="CDD:31781"
gene complement(431889..432407)
/locus_tag="Avi_0510"
/db_xref="GeneID:7388504"
CDS complement(431889..432407)
/locus_tag="Avi_0510"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_002548363.1"
/db_xref="GI:222147406"
/db_xref="GeneID:7388504"
/translation="MDHSSENPSPGGWGWLKRIFEFAGVLAFIIMFGSTLLGVIARYF
GLGGFEWSFEVAGIAFIWIIFIGLINAEVRGENVAFEAFKHSAPPRLRAAFDAIANLA
LLTMGLAFVISGWAVWQRSWKVPTSVLRMPTGVITATILILGVAAVCIALYRLSHRVR
PLPGKPQEGSLR"
misc_feature complement(431928..432371)
/locus_tag="Avi_0510"
/note="TRAP-type C4-dicarboxylate transport system, small
permease component [Carbohydrate transport and
metabolism]; Region: DctM; COG3090"
/db_xref="CDD:32904"
gene complement(432418..433413)
/locus_tag="Avi_0511"
/db_xref="GeneID:7388921"
CDS complement(432418..433413)
/locus_tag="Avi_0511"
/codon_start=1
/transl_table=11
/product="C4-dicarboxylate-binding protein"
/protein_id="YP_002548364.1"
/db_xref="GI:222147407"
/db_xref="GeneID:7388921"
/translation="MFTLNKSSRLPAIMLGTVLGLSSLWSSTASAETTLRLAHASAPE
SLINEAVQKFATEVGENTKGSVKVQIFPNAQLGDEGPIADGVGAGSIDIGLGGAVDAI
DPRLNVLSLPFLFKDASNVHAFLDGEQGQKIQRLGEERGYVMLGVLDSGFRQFATNKP
IEKPADLAGVKIRTPPNPVILATMKQLGALAESIPFGQVYTALQSHVVAAVEPEMRDY
WDSKWYEVAKDLSISNYIWTANWWYMNKDKLDSLTPDEQAAVKKAATDTVVWYRSALD
KAYADTQKKLEGKGVKVTKVDTAPFVALVSPVYEQFSKEWGSDLVSAVKQAASAN"
misc_feature complement(432433..433389)
/locus_tag="Avi_0511"
/note="TRAP-type C4-dicarboxylate transport system,
periplasmic component [Carbohydrate transport and
metabolism]; Region: DctP; COG1638"
/db_xref="CDD:31825"
misc_feature complement(432469..433305)
/locus_tag="Avi_0511"
/note="Bacterial extracellular solute-binding protein,
family 7; Region: SBP_bac_7; pfam03480"
/db_xref="CDD:202660"
gene 433595..434458
/locus_tag="Avi_0512"
/db_xref="GeneID:7388924"
CDS 433595..434458
/locus_tag="Avi_0512"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_002548365.1"
/db_xref="GI:222147408"
/db_xref="GeneID:7388924"
/translation="MRNLDSDALASFVAVAETGSFTAAAERLGRTQAAVSMAIGKWEE
RLDLRLFDRGHRRVTLTPIGERLLGYARRIRAIEDEALATLLEGRNESRVRLGMPDDY
LTLFGTALMQRFAPQHPKVNLDLQYDFSHHLEGMVESRELDIAIITQSPAEPKGELIR
LERQVWCAAPNRYPEHSSTIQLALFPDGCRSRPQVLAALDRADRRWRIVYSSSDIAGI
QLAVHSGDLLTVLPETAVPANWRKLGMDDGLPELPILRLAMVLPQQPRLPVRQLATFL
RAEFQHSLSTA"
misc_feature 433604..434437
/locus_tag="Avi_0512"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 433613..433789
/locus_tag="Avi_0512"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 433871..434422
/locus_tag="Avi_0512"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature order(433916..433921,433925..433930,433937..433939,
433949..433951,433955..433975,434219..434236,
434252..434257,434261..434266)
/locus_tag="Avi_0512"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 434492..435784
/locus_tag="Avi_0513"
/db_xref="GeneID:7388925"
CDS 434492..435784
/locus_tag="Avi_0513"
/codon_start=1
/transl_table=11
/product="MFS permease"
/protein_id="YP_002548366.1"
/db_xref="GI:222147409"
/db_xref="GeneID:7388925"
/translation="MISNALASMLARRNIHYGWIVVAATFLTMLVTAGAMGAPGVLIK
PLQDEFGWETSQISSALAVRLVLFGLMGPFSAAFMNYFGVRKVIVFAMILISSGFIGS
LFMTEIWQLLVLWGVVVGLGTGLTAMVLAATVSARWFTRHRGLVVGMLSASSATGQLV
FLPLMAQLTESYGWRMTVFFVCGMILLAALIVLAVMRDRPSDLNLPSFGEEQVMPPPQ
QAGGLLTMLATPVSVLREVSKTSTFWILFATFFICGLSTNGLIQTHFVTLCGDFGILP
VAAASVLAVMGIFDFFGTIGSGWLSDRFDNRWLLFWYYGLRGLSLLFLPFSDFSFYGL
SIFAVFYGLDWIATVPPTVKIAADRFGREKAGIVFGWVFTGHQLGAATAAYGAGLSRT
QLQSYLPAFFIAGAFCLLASILAITLEKTGRSALSAAR"
misc_feature 434555..435745
/locus_tag="Avi_0513"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 434567..435625
/locus_tag="Avi_0513"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:191813"
misc_feature order(434597..434599,434606..434614,434618..434623,
434672..434674,434681..434686,434693..434695,
434705..434710,434714..434719,434858..434863,
434870..434875,434882..434887,434894..434896,
434930..434935,434942..434947,434963..434965,
435251..435253,435260..435265,435272..435277,
435284..435286,435326..435328,435338..435340,
435350..435352,435359..435361,435371..435373,
435515..435517,435524..435529,435536..435538,
435548..435553,435560..435562,435593..435598,
435605..435610,435617..435622,435629..435631)
/locus_tag="Avi_0513"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 435922..436392
/locus_tag="Avi_0514"
/db_xref="GeneID:7388926"
CDS 435922..436392
/locus_tag="Avi_0514"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548367.1"
/db_xref="GI:222147410"
/db_xref="GeneID:7388926"
/translation="MIVQLNTSVPSAGAAKEDTASPLQEGAVLPETLSLAERETYNLA
LDAQNGDNVLDKVILNVVRPPALVLFALLDAGRVFPDVPLPQAQDAYDRMADTTEIEV
PDVGESSKNQPGTKSAKTDSGFADSGSNAISSPIAAGTSSASSTISTSAPSITA"
gene 436775..438265
/locus_tag="Avi_0516"
/db_xref="GeneID:7388927"
CDS 436775..438265
/locus_tag="Avi_0516"
/codon_start=1
/transl_table=11
/product="coenzyme A transferase"
/protein_id="YP_002548368.1"
/db_xref="GI:222147411"
/db_xref="GeneID:7388927"
/translation="MLRDRIRYRPLMDKLVTADEAAAMIEDGMTIGMSGFTRAGEAKA
VPMALAERARKHPLKITLMTGASLGNDLDKTLVEAHVVSRRMPFQADPALRKAINAGE
VMFIDQHLSETVEQLRTGQIAPVDIAIIEAVAITEHGGIVPTTSVGNSASFAILAKKV
IIELNLSQPITLEGLHDIYIPSRRPARMPIPVVTPESRVGLPYISIAPEKIVAIVVSE
KHDSSAPIQPPDDDTKAIAGHLIELLLNEVRQGRMGYDLQPLQAGIGTIANAVLHGFI
DTPFHDLKMYSEVLQDSTFELIDAGKMSFASASSITLSAEMYQKVLPKLAEYKHHLVL
RPQEISNHPEVIRRLGLICINTALEFDLYGNVNSTHVGGTQMMNGIGGSGDFARNAYL
SIFVTKSIAKNGAISSVVPMVSHVDHTEHDVDILITEQGLADLRGLAPRERAQLVLDN
CVHPDYRDQLADYYQRALVRGGHTPHILEEAFSWHQSMRETGTMRR"
misc_feature 436793..437419
/locus_tag="Avi_0516"
/note="Acetyl-CoA hydrolase/transferase N-terminal domain;
Region: AcetylCoA_hydro; pfam02550"
/db_xref="CDD:111448"
misc_feature 436814..438253
/locus_tag="Avi_0516"
/note="succinate CoA transferases; Region: YgfH_subfam;
TIGR03458"
/db_xref="CDD:163273"
misc_feature 437765..438160
/locus_tag="Avi_0516"
/note="Acetyl-CoA hydrolase/transferase C-terminal domain;
Region: AcetylCoA_hyd_C; pfam13336"
/db_xref="CDD:205516"
gene 438328..439734
/locus_tag="Avi_0517"
/db_xref="GeneID:7388928"
CDS 438328..439734
/locus_tag="Avi_0517"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548369.1"
/db_xref="GI:222147412"
/db_xref="GeneID:7388928"
/translation="MMLTRDGYRPDPTMIKPHADRSAPCLSENPSLPEKQNITTLPRR
SRRRGLSMSMRLAARPLAIIMLGVLLAGCASRAVGVMKPVGAVKAANASEVNLLAATT
RAPSEDKSILFSGERGTGLLIDAVTISIPPAANRKIGEVQWPKKLPPDPRKDFTTVAV
QPIQTDQQRRTWLNTHAKGKHRVLLFVHGFNNTYEDSVYRFAQIVHDSGTDVVPMVFT
WPSRASIFDYNYDKESTNYSRDALEEMLTRMTSDPQVSDVTVMAHSMGSWLAVEALRQ
MAIRHGGVNAKITNVILASPDLDVDVFGKQFQALGPKPPHFTLFVSQDDRALSISRRI
SGNVDRLGQINPANEPYRSVLEKAGITVLDLTKLKTGDRLNHGKFAESPEVVRLIGGR
LIAGQTVTDSQVGVGEALGAVTIGATNTIGQAASTAISAPIMIFDPRTRRNYGDQLKK
LGESAGSTVTSVGDTVPR"
misc_feature 438529..439656
/locus_tag="Avi_0517"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4782"
/db_xref="CDD:34393"
gene 439842..440885
/locus_tag="Avi_0518"
/db_xref="GeneID:7388929"
CDS 439842..440885
/locus_tag="Avi_0518"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548370.1"
/db_xref="GI:222147413"
/db_xref="GeneID:7388929"
/translation="MRWKRMMQLLDVHCEGEIGKVAIGGVPKIPGDTVADQLHWLNTD
PKGRELRHFLVLEPRGAPIGSVNLLLPAKDSRADAAFIILQPDQAHASSGSNSICVTT
ALLESGMIEMQEPETVVMLETAAGLVKAVAQCRDGHCDSVTLTMVPSFVHELDAQIAT
ESWGEIRFDLAYGGVFYALVDVRQLGLTIEPGNARRLVEAGMLLKGEINQRIQVVHPD
IPAISGVAYVMFRDEDPDGAVRTCTTMWPGRVDRSPCGTGNSANLATLHARGRVKPGD
SFLSRSIIGSQFTVGLQGLTTVAGRSAVIPTITGRGFTYGIHQVALDAFDPLGGGFVL
TDVWGAAAETIKI"
misc_feature 439842..440861
/locus_tag="Avi_0518"
/note="Proline racemase [Amino acid transport and
metabolism]; Region: COG3938"
/db_xref="CDD:33720"
misc_feature 439869..440843
/locus_tag="Avi_0518"
/note="hydroxyproline-2-epimerase; Provisional; Region:
PRK13971"
/db_xref="CDD:184428"
gene 441222..441962
/locus_tag="Avi_0519"
/db_xref="GeneID:7388930"
CDS 441222..441962
/locus_tag="Avi_0519"
/codon_start=1
/transl_table=11
/product="Fnr-like transcriptional activator"
/protein_id="YP_002548371.1"
/db_xref="GI:222147414"
/db_xref="GeneID:7388930"
/translation="MTSQDTADTGMADMDMTDTGMFLAKADIFASLTPEEDRAWSQLC
TVESVSGGTIVLDYGIRPEIVLVVLSGALRATLRVSAGKELFLDMIGPGGTMAEMDAI
RAEGYNLCLMATTDATLVRMPVDVFNDIIAQKHTVCLSLLSVLVQRMHVLHARICEFS
YLDVRHRLYTTLLRLSKPSEDKPQQRTISPVIIHAALAEHVGARRETVSREMSRLVQD
GVIERNRNAIVIRQPHELLRRLSQFDFA"
misc_feature 441285..441911
/locus_tag="Avi_0519"
/note="cAMP-binding proteins - catabolite gene activator
and regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms]; Region: Crp; COG0664"
/db_xref="CDD:31008"
misc_feature 441303..441620
/locus_tag="Avi_0519"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:28920"
misc_feature order(441510..441515,441540..441548)
/locus_tag="Avi_0519"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:28920"
misc_feature 441606..441614
/locus_tag="Avi_0519"
/note="flexible hinge region; other site"
/db_xref="CDD:28920"
misc_feature 441720..441938
/locus_tag="Avi_0519"
/note="Crp-like helix-turn-helix domain; Region:
HTH_Crp_2; pfam13545"
/db_xref="CDD:205723"
misc_feature 441720..441725
/locus_tag="Avi_0519"
/note="putative switch regulator; other site"
/db_xref="CDD:28976"
misc_feature order(441792..441794,441798..441806,441831..441833)
/locus_tag="Avi_0519"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:28976"
misc_feature 441831..441851
/locus_tag="Avi_0519"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28976"
misc_feature order(441834..441839,441849..441851)
/locus_tag="Avi_0519"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28976"
misc_feature 441834..441839
/locus_tag="Avi_0519"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:28976"
gene 442287..442688
/gene="pleD"
/locus_tag="Avi_0520"
/db_xref="GeneID:7388931"
CDS 442287..442688
/gene="pleD"
/locus_tag="Avi_0520"
/codon_start=1
/transl_table=11
/product="two component response regulator"
/protein_id="YP_002548372.1"
/db_xref="GI:222147415"
/db_xref="GeneID:7388931"
/translation="MSILIVEDNATNAMILKHLARKVADDEIIVQADANEALVLCHQT
LFDLLIVDQILPGMSGLQFVTTLRQLGRYDQVPIIMVTADNEPGLRQAARQVGITDFL
TKPVEALAFRQLIANYRGGSVAGEARGAVVR"
misc_feature 442293..442604
/gene="pleD"
/locus_tag="Avi_0520"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 442296..442640
/gene="pleD"
/locus_tag="Avi_0520"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(442305..442310,442440..442442,442464..442466,
442530..442532,442587..442589,442596..442601)
/gene="pleD"
/locus_tag="Avi_0520"
/note="active site"
/db_xref="CDD:29071"
misc_feature 442440..442442
/gene="pleD"
/locus_tag="Avi_0520"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(442449..442454,442458..442466)
/gene="pleD"
/locus_tag="Avi_0520"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 442596..442604
/gene="pleD"
/locus_tag="Avi_0520"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 442685..443179
/locus_tag="Avi_0521"
/db_xref="GeneID:7388932"
CDS 442685..443179
/locus_tag="Avi_0521"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548373.1"
/db_xref="GI:222147416"
/db_xref="GeneID:7388932"
/translation="MKGYVLAIALLFALAPRAEALDKPKGAVILTVEGKLSHSNSGDK
AIFDLAMLDALPGRTVTLETPWTKKPATYSGPLLRAVLDAAGAGRGAVTVRALNDYSA
VIPPEDVTGLNIILATRMDGETMPVRDKGPMMVIYPFDEDSSLYTETYFARSVWQIKS
LEVR"
misc_feature 442799..443173
/locus_tag="Avi_0521"
/note="Sulfite oxidase (SO) family, molybdopterin binding
domain. This molybdopterin cofactor (Moco) binding domain
is found in a variety of oxidoreductases, main members of
this family are nitrate reductase (NR) and sulfite oxidase
(SO). SO catalyzes the...; Region: SO_family_Moco;
cl00199"
/db_xref="CDD:206895"
gene 443179..445434
/locus_tag="Avi_0522"
/db_xref="GeneID:7388933"
CDS 443179..445434
/locus_tag="Avi_0522"
/codon_start=1
/transl_table=11
/product="two component sensor kinase/response regulator
hybrid"
/protein_id="YP_002548374.1"
/db_xref="GI:222147417"
/db_xref="GeneID:7388933"
/translation="MLLAPATAQKRQTQPKTTMILLILSGVLLLTFLLLFKDVSDRYR
LLFDDIRENAVWSIYQLDREARALDYVLVEASNQGASDEKAIAQVSMRYDILLSRINL
VNDSKFGSYFNSDTTISGHLQSIGDIIRKIQPVLDGFQTGVVPDTQQIEEVKRDLDVL
CAQTNDLLIYTNSYVGNQRSTIRSAMFEMEKTSAIMLGLLMASVIFLVVTLHRQLKSV
RETSRRLETMTRELSDAYEAADSGNRAKSQFMATMGHEIRTPLNAILGMAELLEYSQL
PSDALQSVKTIRSSGEALLEVINEILDYSKIEHGKLELEERAVDISSLAENTISIMQG
RSDDQDNQLVLDIPVSLDALYVRTDPTRLRQVLLNLLSNAIKFTQNGVVTLRLREFYR
GSALMLRFEVEDTGIGIDETGLAKLFKPFSQVDASISRKYGGTGLGLTICKQIVEKLG
GELGMSSTVGVGSIFWFELPVMAAGKDDVRQNARHSSADLPRLKILLVEDNRVNQQVA
SRFLSKLGQDVVVAGDGAQAVARTEREVFDMILMDMQMPVMDGIEATRHIIERGGASA
LTPIVAMTANASDDDRRRCRAAGMVGFESKPVTMNRLRDLILSFAPVDREQVSGEEPV
ETKPQQDSVLDHSPLTLQQHLDEINGLDEARHDELVEALGEEIYQELIESFFDDAAQL
LGELHNAMAQRNPREIDRVLHTIKGAAVNVGLNDIAGFAHALRVQQPTPDAVHRLTQE
VDLMKLKLVGA"
misc_feature 443905..444096
/locus_tag="Avi_0522"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(443923..443925,443935..443937,443947..443949,
443956..443958,443968..443970,443977..443979,
444025..444027,444037..444039,444046..444048,
444058..444060,444067..444069,444079..444081)
/locus_tag="Avi_0522"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 443941..443943
/locus_tag="Avi_0522"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 444265..444585
/locus_tag="Avi_0522"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(444283..444285,444295..444297,444304..444306,
444382..444384,444388..444390,444394..444396,
444400..444405,444484..444495,444541..444543,
444547..444549,444562..444567,444571..444573)
/locus_tag="Avi_0522"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 444295..444297
/locus_tag="Avi_0522"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(444394..444396,444400..444402,444484..444486,
444490..444492)
/locus_tag="Avi_0522"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 444661..445002
/locus_tag="Avi_0522"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 444664..444999
/locus_tag="Avi_0522"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(444673..444678,444805..444807,444829..444831,
444898..444900,444955..444957,444964..444969)
/locus_tag="Avi_0522"
/note="active site"
/db_xref="CDD:29071"
misc_feature 444805..444807
/locus_tag="Avi_0522"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(444814..444819,444823..444831)
/locus_tag="Avi_0522"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 444964..444972
/locus_tag="Avi_0522"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 445183..445422
/locus_tag="Avi_0522"
/note="Histidine Phosphotransfer domain, involved in
signalling through a two part component systems in which
an autophosphorylating histidine protein kinase serves as
a phosphoryl donor to a response regulator protein; the
response regulator protein is...; Region: HPT; cd00088"
/db_xref="CDD:28972"
misc_feature order(445285..445287,445294..445299,445342..445344)
/locus_tag="Avi_0522"
/note="putative binding surface; other site"
/db_xref="CDD:28972"
misc_feature 445285..445287
/locus_tag="Avi_0522"
/note="active site"
/db_xref="CDD:28972"
gene 445552..446631
/locus_tag="Avi_0523"
/db_xref="GeneID:7388934"
CDS 445552..446631
/locus_tag="Avi_0523"
/codon_start=1
/transl_table=11
/product="Response regulator protein"
/protein_id="YP_002548375.1"
/db_xref="GI:222147418"
/db_xref="GeneID:7388934"
/translation="MLVDDNNTNLKLLTRLVKKIDHCEPVAFSTPEEVLSALPELDFD
VAIIDYQMPVYNGVELYTEIVRFEKYAQVPVVFITADKDMTTRMAALNAGAIDFLTKP
VNPIEFQARIHNIVSLSIARRQLADQAEWLRREVDRAVGELRQREQEIIERLTLAAGY
KDPDTSRHTLRVAAYAQAIAREMGLPEQFCTDLKLAAPMHDIGKVAMPDTVLLKQGRL
TESEYRQMQSHAQIGSDILAQSHSSLLQLAAEIAASHHERWDGQGYPNRLAGDAIPLS
GRIVCIADNFDALTTERPYKPAWSYERTVEHVLARAGSQFDPACVAAFERALPAIHEI
IEADRREQAEEAARKAAALPLDKIA"
misc_feature 445552..446553
/locus_tag="Avi_0523"
/note="Response regulator containing a CheY-like receiver
domain and an HD-GYP domain [Transcription / Signal
transduction mechanisms]; Region: COG3437"
/db_xref="CDD:33243"
misc_feature 445552..445899
/locus_tag="Avi_0523"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(445561..445566,445696..445698,445720..445722,
445786..445788,445843..445845,445852..445857)
/locus_tag="Avi_0523"
/note="active site"
/db_xref="CDD:29071"
misc_feature 445696..445698
/locus_tag="Avi_0523"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(445705..445710,445714..445722)
/locus_tag="Avi_0523"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 445852..445860
/locus_tag="Avi_0523"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 446038..446457
/locus_tag="Avi_0523"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(446053..446055,446149..446154,446401..446403)
/locus_tag="Avi_0523"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 446152..446154
/locus_tag="Avi_0523"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene 446740..447792
/gene="pyrC"
/locus_tag="Avi_0524"
/db_xref="GeneID:7388935"
CDS 446740..447792
/gene="pyrC"
/locus_tag="Avi_0524"
/note="catalyzes the formation of N-carbamoyl-L-aspartate
from (S)-dihydroorotate in pyrimidine biosynthesis"
/codon_start=1
/transl_table=11
/product="dihydroorotase"
/protein_id="YP_002548376.1"
/db_xref="GI:222147419"
/db_xref="GeneID:7388935"
/translation="MRSLTIRRPDDWHLHLRDGAMLEGVIGDTSRHFARAIIMPNLVP
PVVTTADAEAYRQRILAAVPKGDRFEPLMTLYLTEQTSPDDVEEGKTTGLITAVKLYP
AGATTNSHGGVRDLDKAMPVLERMAKIGLPLCVHGEVTTPEVDIFDREAVFIDTVLDP
LRRRLPELKVTMEHVTTSDGIDYILSADSNLAGSITTHHLIINRNAILVGGIRPHYYC
LPVAKRESHRLALRRAATSGDSRFFLGTDSAPHVDPLKECGCGCAGIYTSINTMSCLA
HVFEEDEALERLEAFVSLNGPAWYGLQPNDEMITLVRRDAPVAFPAKIETGAGPVTVF
DPMFPIHWDVEAAIQA"
misc_feature 446749..447765
/gene="pyrC"
/locus_tag="Avi_0524"
/note="Dihydroorotase (DHOase) catalyzes the reversible
interconversion of carbamoyl aspartate to dihydroorotate,
a key reaction in the pyrimidine biosynthesis. In contrast
to the large polyfunctional CAD proteins of higher
organisms, this group of DHOases is...; Region: DHOase;
cd01294"
/db_xref="CDD:73253"
misc_feature order(446776..446778,446782..446784,447034..447036,
447145..447147,447259..447261,447478..447480)
/gene="pyrC"
/locus_tag="Avi_0524"
/note="active site"
/db_xref="CDD:73253"
misc_feature order(446788..446790,447391..447396,447484..447486,
447490..447492,447526..447531)
/gene="pyrC"
/locus_tag="Avi_0524"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:73253"
misc_feature order(447175..447186,447349..447354,447388..447390,
447409..447411,447514..447522)
/gene="pyrC"
/locus_tag="Avi_0524"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73253"
gene 448005..449180
/locus_tag="Avi_0525"
/db_xref="GeneID:7388936"
CDS 448005..449180
/locus_tag="Avi_0525"
/codon_start=1
/transl_table=11
/product="GGDEF family protein"
/protein_id="YP_002548377.1"
/db_xref="GI:222147420"
/db_xref="GeneID:7388936"
/translation="MMVDFSSLLLALGVSTLCLLFTFLGTWMARRENSFLLSWVIGLA
LTMVGILAYGLFTSTPSRGLGALAMSSIITGFFILYAAARQFRTGIIPFKTLIVVSCV
AVIALSAAFLSGYGGIGFMLFNTATAIVMLVIAHQYWLGRAESPGVLSGMAVLYGATS
LSFLACALALVQRGQWQLEVAPSGWVEDINMAVCIAGMSGIGALSLTLHQTRITARHR
LEAMTDALTGLCNRRALFNAHGTKTFHEDMAMLVFDIDRFKAINDRYGHAVGDEVIRN
IAAELKAAIGLSSVTRLGGEEFAAVLENAAPGRAEWIGERIRRQLQDREVVVDGDSFV
ATTSVGIAYGTASGLTFDEILNLADNALYNAKRLGRNRVETAVANWESGLSVEADSA"
misc_feature 448668..449126
/locus_tag="Avi_0525"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(448764..448766,448890..448892)
/locus_tag="Avi_0525"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(448779..448781,448788..448793,448803..448805,
448815..448817,448878..448880,448884..448895)
/locus_tag="Avi_0525"
/note="active site"
/db_xref="CDD:143635"
misc_feature 448950..448952
/locus_tag="Avi_0525"
/note="I-site; other site"
/db_xref="CDD:143635"
gene 449446..450138
/gene="pyrE"
/locus_tag="Avi_0528"
/db_xref="GeneID:7388937"
CDS 449446..450138
/gene="pyrE"
/locus_tag="Avi_0528"
/note="involved in fifth step of pyrimidine biosynthesis;
converts orotidine 5'-phosphate and diphosphate to orotate
and 5-phospho-alpha-D-ribose 1-diphosphate"
/codon_start=1
/transl_table=11
/product="orotate phosphoribosyltransferase"
/protein_id="YP_002548378.1"
/db_xref="GI:222147421"
/db_xref="GeneID:7388937"
/translation="MTQTSFSDPAVMAELLAKMLWEIKAVHFNAAEPYKLASGMRSPV
YIDCRKLLSYPRVRSAVMDFAVATLLRNAGFEQFDCIAGGETAGIPFAALLADRLALP
MIYVRKQPKGHGRNAQIEGHMPDGARVLVIEDLTTAGGSMFTFIDAVRAAGGVVDHGI
ALFFYGIFPQAHQRFENGNVKLHYIATWRNVLAVARDQKLFDDKTLSEVESFLDAPLE
WSGRNGGVSTLG"
misc_feature 449668..450006
/gene="pyrE"
/locus_tag="Avi_0528"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(449698..449700,449704..449706,449842..449850,
449854..449868,449944..449946)
/gene="pyrE"
/locus_tag="Avi_0528"
/note="active site"
/db_xref="CDD:206754"
gene 450237..451163
/gene="scrK"
/locus_tag="Avi_0530"
/db_xref="GeneID:7388938"
CDS 450237..451163
/gene="scrK"
/locus_tag="Avi_0530"
/codon_start=1
/transl_table=11
/product="fructokinase"
/protein_id="YP_002548379.1"
/db_xref="GI:222147422"
/db_xref="GeneID:7388938"
/translation="MILCCGEALIDMLPRETTLGEKGFSPYAGGAVFNTGIALGRLGV
ASGFFTGLSDDMMGDILRDTLRASHVDFSYCATLSRPTTIAFVKLVDGHATYAFYDEN
TAGRMITEADLPALGEDCEALHFGAISLIPEPCGSTYEALLNREHKTRVISLDPNIRP
GFIKDKAAHMARIRRMAALSDIVKFSDEDLAWFGLDGDEDTLARHWLHHGAKLVVVTR
GADGAVGYTADHKVEVPSEKVTVVDTVGAGDTFDAGVLASLKMQNLLTKQQVAKLTEE
QIAKALALGSKAAAVTVSRAGANPPFAHEIGL"
misc_feature 450237..451130
/gene="scrK"
/locus_tag="Avi_0530"
/note="Fructokinases (FRKs) mainly from bacteria and
plants are enzymes with high specificity for fructose, as
are all FRKs, but they catalyzes the conversion of
fructose to fructose-6-phosphate, which is an entry point
into glycolysis via conversion into...; Region: bac_FRK;
cd01167"
/db_xref="CDD:29351"
misc_feature 450237..451013
/gene="scrK"
/locus_tag="Avi_0530"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature order(450336..450338,450972..450974,450981..450983)
/gene="scrK"
/locus_tag="Avi_0530"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:29351"
misc_feature order(450792..450794,450885..450887,450966..450968,
450975..450980,450987..450989)
/gene="scrK"
/locus_tag="Avi_0530"
/note="putative ATP binding site [chemical binding]; other
site"
/db_xref="CDD:29351"
gene complement(451216..451608)
/locus_tag="Avi_0533"
/db_xref="GeneID:7388939"
CDS complement(451216..451608)
/locus_tag="Avi_0533"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548380.1"
/db_xref="GI:222147423"
/db_xref="GeneID:7388939"
/translation="MSAPILRVARPTDSIEGLRPFYQFGLGFEEIASFRDHNGFNGVM
FGHKRWPYHLEFTHHIGHSVGRAPTQDNLLVFYLPEEEAWQSAVNRMRDAGFRPVTSY
NPYWDNLGRTFEDPDGYRVVLQNSAWAL"
misc_feature complement(451240..451596)
/locus_tag="Avi_0533"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature complement(451240..451587)
/locus_tag="Avi_0533"
/note="This domain superfamily is found in a variety of
structurally related metalloproteins, including the type I
extradiol dioxygenases, glyoxalase I and a group of
antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
cd06587"
/db_xref="CDD:211348"
misc_feature complement(order(451243..451245,451249..451251,
451273..451275,451390..451392,451435..451437,
451444..451446,451489..451491,451576..451578))
/locus_tag="Avi_0533"
/note="active site"
/db_xref="CDD:211348"
gene complement(451611..453236)
/gene="pgi"
/locus_tag="Avi_0534"
/db_xref="GeneID:7388940"
CDS complement(451611..453236)
/gene="pgi"
/locus_tag="Avi_0534"
/note="functions in sugar metabolism in glycolysis and the
Embden-Meyerhof pathways (EMP) and in gluconeogenesis;
catalyzes reversible isomerization of glucose-6-phosphate
to fructose-6-phosphate; member of PGI family"
/codon_start=1
/transl_table=11
/product="glucose-6-phosphate isomerase"
/protein_id="YP_002548381.1"
/db_xref="GI:222147424"
/db_xref="GeneID:7388940"
/translation="MHAIVEQLKSTVAATAATDIRGAFASDPKRFERFSSRFDDLLMD
YSKCAVNDEIMALLETLCTQAGVAEKREAMFNGEAINFTEGRAVLHTALRNRANTPVV
VDGKNVMPDVNAVLHAMSAFAEGLRQGTITGSTGLQITDVVNIGIGGSDLGPAMATLA
LAPFHDGPRLHFVSNVDGAHIADTLKLLEPETTLFIVASKTFTTIETMTNAATARAFI
ASALGEDAVGDHFAAVSTALEKVAAFGIGSDRVFGFWDWVGGRYSIWSAIGLPLMIAV
GADNFVEFLAGAHAMDMHFRTAPFRENLPMLLGAIGYHHRNVLDYPTRAILPYDQRLS
RFPAYLQQLDMESNGKGVTIDGSPVKGNSGPVVWGEPGTNGQHAFYQLIHQGTSVIPA
EFMIAAKGFEPELRHQHDLLIANCLAQSAALMKGRTLDEAKGQLLKSGMDQAKADHIA
PHRVFTGNRPSITFVYEQLTPFALGRLIALYEHRVFVEGVLFGINSFDQWGVELGKEL
ATGLLPVVQGKAGTDGQDASTAGLVAALSDLGR"
misc_feature complement(451629..453218)
/gene="pgi"
/locus_tag="Avi_0534"
/note="glucose-6-phosphate isomerase; Reviewed; Region:
pgi; PRK00179"
/db_xref="CDD:178917"
misc_feature complement(452412..452900)
/gene="pgi"
/locus_tag="Avi_0534"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the first SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_1; cd05015"
/db_xref="CDD:88410"
misc_feature complement(order(452457..452459,452625..452627,
452634..452642,452787..452792,452796..452798))
/gene="pgi"
/locus_tag="Avi_0534"
/note="active site"
/db_xref="CDD:88410"
misc_feature complement(order(452598..452600,452607..452609,
452619..452621,452706..452717))
/gene="pgi"
/locus_tag="Avi_0534"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88410"
misc_feature complement(451701..452273)
/gene="pgi"
/locus_tag="Avi_0534"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the second SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_2; cd05016"
/db_xref="CDD:88411"
misc_feature complement(order(451974..451976,451983..451985,
452007..452009,452013..452015,452082..452084,
452091..452096,452103..452108,452115..452123,
452127..452129,452187..452192,452199..452201,
452211..452213,452247..452249,452271..452273))
/gene="pgi"
/locus_tag="Avi_0534"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88411"
misc_feature complement(order(452199..452201,452211..452213))
/gene="pgi"
/locus_tag="Avi_0534"
/note="active site"
/db_xref="CDD:88411"
gene complement(453416..455116)
/gene="fadD"
/locus_tag="Avi_0535"
/db_xref="GeneID:7388941"
CDS complement(453416..455116)
/gene="fadD"
/locus_tag="Avi_0535"
/note="activates fatty acids by binding to coenzyme A"
/codon_start=1
/transl_table=11
/product="Long-chain-fatty-acid--CoA ligase"
/protein_id="YP_002548382.1"
/db_xref="GI:222147425"
/db_xref="GeneID:7388941"
/translation="MNTLSRPESNFASRRIWLASYPASVPAELPPLDHESLPELFDEN
CVTYASRKAFTSMGRSMTFQELGEQATKIAAWLQAEGFSKGDRIAVMMPNVLQNPVIV
FGILKAGMIVVNVNPLYTPRELAHQLKDSGAVAIFVLENFAHTVQAVMDKVSLRRVVV
TSMGDMLGLKGHLVNFIVRKVKKLVPAWSIANSRSFASVLAAGGKARLRPETLSRNDI
AFLQYTGGTTGVSKGAVLTHGNLIANTMQMSLWLGSAFDTRPRPETLTFICALPLYHI
FALTVNALMGIACGGHNILIANPRDIPGFAKELSRYDFNVIIGLNTLFNALMNNEAFR
KLDFSHLQLTFAGGMSVQRPIAERWHQITGCPITEGYGLSETSPVATANRMNDKDFSG
CIGMPISSTDVDIRDEQGESLALGEVGEICIRGPQVMAGYWQRPEETARAISEDGFFR
TGDMGFMDARGYTKIVDRKKDMILVSGFNVYPNEIEEVAVMHPGVLEAAAIGVPDPHS
GEAVKLFVVRKDPSLTEQQVKDHCATNLTNYKRPRHVAFLEELPKSNVGKILRKDLRP
"
misc_feature complement(453419..455077)
/gene="fadD"
/locus_tag="Avi_0535"
/note="Long-chain-fatty-acid--CoA ligase; Validated;
Region: PRK07059"
/db_xref="CDD:180816"
misc_feature complement(453617..454933)
/gene="fadD"
/locus_tag="Avi_0535"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
misc_feature complement(<453422..453502)
/gene="fadD"
/locus_tag="Avi_0535"
/note="Domain of unknown function (DUF4009); Region:
DUF4009; pfam13193"
/db_xref="CDD:205374"
gene 455424..455705
/locus_tag="Avi_0536"
/db_xref="GeneID:7388942"
CDS 455424..455705
/locus_tag="Avi_0536"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_002548383.1"
/db_xref="GI:222147426"
/db_xref="GeneID:7388942"
/translation="MVFKPAKTFGETPGIVEENPPLAELETAVASQLAGSDGIDASDI
EVISIGNEICLRGLVYSESEVDRAVEVALSVPGVFKVSVDLEIVERTIH"
misc_feature 455532..455690
/locus_tag="Avi_0536"
/note="BON domain; Region: BON; pfam04972"
/db_xref="CDD:203137"
gene complement(455806..457893)
/gene="glgX"
/locus_tag="Avi_0537"
/db_xref="GeneID:7388943"
CDS complement(455806..457893)
/gene="glgX"
/locus_tag="Avi_0537"
/codon_start=1
/transl_table=11
/product="glycogen debranching enzyme GlgX"
/protein_id="YP_002548384.1"
/db_xref="GI:222147427"
/db_xref="GeneID:7388943"
/translation="MDIQTTNFKILPGEWQRLGARYTGEGVNFALFSAHADRVELCLY
DPSGSIEIARMDLPDYTNEIWHGFVPGLKPGALYGFRVHGPFEPENGHRFNHNKLLLD
PYARELVGDIRWSPEVFGYHFDDPDKDLSFNDLDSAAFMPKCRVVDPNQIDWGNDRRP
QVSWADTIVYETHVKGFTQLNPAIPQELRGTFEGLGHKAAVDYIKSLGITSVELLPIH
AFPDDGPLLDKGLKNYWGYNTIGFFAPAHRYYGANGIQGFRDMVRAFHDGGIEVILDV
VYNHTAEGNELGSTLSFKGIDNFSYYRTLPDNHRYYINDTGTGNTVNTSHPRVLQMVM
DSLRYWADDMHVDGFRFDLGTILGREPEGFDERGGFFDAVTQDPTLAGVKLIGEPWDI
GPGGYQVGGFPPGWAEWNDKYRDSCREYWLNGDNCAPDFAARLLGSGDLYDQRGRRPW
ASVNFITAHDGFTLNDLVSYDGKHNEDNGEDNNDGHNDNRSHNYGHEGPTDDEGTNAV
RERQKRNFLATLLFSHGTPMLLAGDEFGRSQMGNNNGYCQDSEISWLHWENLPDSADA
LRDFTKRVISLRKEQPLLRRENWRDGMMIDWYSVSGGRQTSENWENSNALITRLHRED
LQAEEGIWSDIMMLFNPLDEDTTFTIPKESGGERVLELITGDPERQGEKVKQGETFKL
LPRSMALLRTIQT"
misc_feature complement(455821..457860)
/gene="glgX"
/locus_tag="Avi_0537"
/note="glycogen debranching enzyme GlgX; Region:
glgX_debranch; TIGR02100"
/db_xref="CDD:131155"
misc_feature complement(457450..457842)
/gene="glgX"
/locus_tag="Avi_0537"
/note="N-terminal Early set domain associated with the
catalytic domain of Glycogen debranching enzyme and
bacterial isoamylase (also called glycogen
6-glucanohydrolase); Region: E_set_GDE_Isoamylase_N;
cd02856"
/db_xref="CDD:199886"
misc_feature complement(456154..457437)
/gene="glgX"
/locus_tag="Avi_0537"
/note="Alpha amylase catalytic domain found in glycogen
debranching enzymes; Region: AmyAc_Glg_debranch; cd11326"
/db_xref="CDD:200465"
misc_feature complement(order(456514..456519,456730..456732,
456835..456840,456844..456846))
/gene="glgX"
/locus_tag="Avi_0537"
/note="active site"
/db_xref="CDD:200465"
misc_feature complement(order(456514..456516,456730..456732,
456838..456840))
/gene="glgX"
/locus_tag="Avi_0537"
/note="catalytic site [active]"
/db_xref="CDD:200465"
gene 458087..458884
/gene="fabG"
/locus_tag="Avi_0538"
/db_xref="GeneID:7388944"
CDS 458087..458884
/gene="fabG"
/locus_tag="Avi_0538"
/note="Catalyzes the first of the two reduction steps in
the elongation cycle of fatty acid synthesis"
/codon_start=1
/transl_table=11
/product="3-ketoacyl-ACP reductase"
/protein_id="YP_002548385.1"
/db_xref="GI:222147428"
/db_xref="GeneID:7388944"
/translation="MHQNKLDDSKRVALVTGAGSGIGRAAALRLAQDGCAVGLLGRTK
HELERVAEDIHNANGDAMVLVADVADSSSMRAGVETLIAWGGRLDIVVANAGVNGVWA
PIDELQPQEWDQTMAINLRGTYLTVHLTVPHLRRNGGGSIVVVSSINGTRTFTSPGAT
AYSATKAGQLAMVQQLAVELGPDRIRINAVCPGAIETEIDDNTNKRSTERLDIPQPPP
HHAIPLTRGTPGTAQEVADLIGFLASDAACHISGTPVWIDGAQSLIR"
misc_feature 458117..458875
/gene="fabG"
/locus_tag="Avi_0538"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05653"
/db_xref="CDD:180183"
misc_feature 458123..458860
/gene="fabG"
/locus_tag="Avi_0538"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(458135..458137,458141..458152,458207..458215,
458282..458290,458366..458374,458438..458440,
458519..458527,458570..458572,458582..458584,
458660..458671,458675..458680)
/gene="fabG"
/locus_tag="Avi_0538"
/note="NAD(P) binding site [chemical bind 