LOCUS NC_013191 37695 bp DNA circular CON 08-JUN-2013
DEFINITION Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid
pAph03, complete sequence.
ACCESSION NC_013191
VERSION NC_013191.1 GI:257074491
DBLINK Project: 59207
BioProject: PRJNA59207
KEYWORDS .
SOURCE Candidatus Accumulibacter phosphatis clade IIA str. UW-1
ORGANISM Candidatus Accumulibacter phosphatis clade IIA str. UW-1
Bacteria; Proteobacteria; Betaproteobacteria; Candidatus
Accumulibacter.
REFERENCE 1 (bases 1 to 37695)
AUTHORS Martin,H.G., Ivanova,N., Kunin,V., Warnecke,F., Barry,K., He,S.,
Salamov,A., Szeto,E., Dalin,E., Pangilinan,J.L., Lapidus,A.,
Lowry,S., Kyrpides,N.C., McMahon,K.D. and Hugenholtz,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of plasmid3 of Candidatus Accumulibacter
phosphatis clade IIA str. UW-1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 37695)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-SEP-2009) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 37695)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
Tice,H., Bruce,D., Barry,K., Pitluck,S., Lowry,S., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Ivanova,N., McMahon,K.D. and
Hugenholtz,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2009) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP001718.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3635729
Source DNA available from Katherine D. McMahon
(tmcmahon@cae.wisc.edu)
Contacts: Katherine D. McMahon (tmcmahon@cae.wisc.edu)
David Bruce (microbe@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
##Metadata-START##
Organism Display Name :: Candidatus Accumulibactor phosphatis Type
IIA UW-1
GOLD Stamp ID :: Gi03328
Isolation Site :: enhanced biological phosphorus removal
(EBPR) wastewater treatment bioreactor
Collection Date :: 6/30/2004
Isolation Country :: USA
Latitude :: 43.078418
Longitude :: -89.386482
Altitude :: elevation: 263m
Oxygen Requirement :: Aerobe
Cell Shape :: Rod-shaped
Temperature Range :: Mesophile
Gram Staining :: gram-
Biotic Relationship :: Free living
Diseases :: None
Habitat :: Sediment, Sludge
Phenotypes :: EBPR, Polyphosphate-accumulating
Energy Source :: Chemoheterotroph
##Metadata-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..37695
/organism="Candidatus Accumulibacter phosphatis clade IIA
str. UW-1"
/mol_type="genomic DNA"
/strain="UW-1"
/db_xref="taxon:522306"
/plasmid="pAph03"
gene 150..716
/locus_tag="CAP2UW1_4475"
/db_xref="GeneID:8401875"
CDS 150..716
/locus_tag="CAP2UW1_4475"
/note="PFAM: Resolvase domain;
KEGG: xac:XACb0061 invertase recombinase-like protein"
/codon_start=1
/transl_table=11
/product="Resolvase domain protein"
/protein_id="YP_003162889.1"
/db_xref="GI:257074492"
/db_xref="InterPro:IPR006118"
/db_xref="InterPro:IPR006119"
/db_xref="GeneID:8401875"
/translation="MALIGYARVSTAEQDTALQTDALNKAGCERTFEDTVSGAKADRP
GLAEALAYLRDGDVLAVWRLDRLGRSLPHLIDTIAALEARGVGFRSLTEAIDTTTPGG
RLIFHVFGALGQFERDLIRERTKAGLTAAAARGRKGGRKPVVTADKLQRAQDHIANGL
NVREAATRLKVSKTALYAALQSASAADS"
misc_feature 150..>515
/locus_tag="CAP2UW1_4475"
/note="Site-specific recombinases, DNA invertase Pin
homologs [DNA replication, recombination, and repair];
Region: PinR; COG1961"
/db_xref="CDD:224872"
misc_feature 156..515
/locus_tag="CAP2UW1_4475"
/note="Serine Recombinase (SR) family, Resolvase and
Invertase subfamily, catalytic domain; members contain a
C-terminal DNA binding domain. Serine recombinases
catalyze site-specific recombination of DNA molecules by a
concerted, four-strand cleavage and...; Region: SR_ResInv;
cd03768"
/db_xref="CDD:239737"
misc_feature order(171..173,177..179,342..347,354..356)
/locus_tag="CAP2UW1_4475"
/note="catalytic residues [active]"
/db_xref="CDD:239737"
misc_feature 177..179
/locus_tag="CAP2UW1_4475"
/note="catalytic nucleophile [active]"
/db_xref="CDD:239737"
misc_feature order(339..341,471..476,480..485,495..497)
/locus_tag="CAP2UW1_4475"
/note="Presynaptic Site I dimer interface [polypeptide
binding]; other site"
/db_xref="CDD:239737"
misc_feature order(357..359,372..377,459..461,468..473,480..485,
492..494,501..503)
/locus_tag="CAP2UW1_4475"
/note="Synaptic Antiparallel dimer interface [polypeptide
binding]; other site"
/db_xref="CDD:239737"
misc_feature order(426..434,459..464,471..476,483..485,495..497,
504..506)
/locus_tag="CAP2UW1_4475"
/note="Synaptic Flat tetramer interface [polypeptide
binding]; other site"
/db_xref="CDD:239737"
misc_feature order(426..428,474..476,483..485,495..497,504..506)
/locus_tag="CAP2UW1_4475"
/note="Synaptic Site I dimer interface [polypeptide
binding]; other site"
/db_xref="CDD:239737"
gene complement(920..1285)
/locus_tag="CAP2UW1_4476"
/db_xref="GeneID:8401827"
CDS complement(920..1285)
/locus_tag="CAP2UW1_4476"
/note="KEGG: sme:SMa2167 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162890.1"
/db_xref="GI:257074493"
/db_xref="GeneID:8401827"
/translation="MKTLKVGIASYEDMKARTMAIAKGALKPKAGDPTVWFTSPESFA
KLLSNRNRTLLGVIVDTRPESLIALASTTGRTAGNLSRTLRTMERYGLVRLHKGVRGA
VRPEVPYRDVQLEMRLSSS"
misc_feature complement(923..1285)
/locus_tag="CAP2UW1_4476"
/note="Predicted transcriptional regulator
[Transcription]; Region: COG4190"
/db_xref="CDD:226653"
misc_feature complement(995..1159)
/locus_tag="CAP2UW1_4476"
/note="Helix-turn-helix domain; Region: HTH_20; pfam12840"
/db_xref="CDD:205100"
gene complement(1282..1632)
/locus_tag="CAP2UW1_4477"
/db_xref="GeneID:8401828"
CDS complement(1282..1632)
/locus_tag="CAP2UW1_4477"
/note="KEGG: mag:amb3185 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162891.1"
/db_xref="GI:257074494"
/db_xref="GeneID:8401828"
/translation="MMPSRDASLDNLLDLNGQVLVIDAAGYWVRFVVHQVPVTAQKPH
GLDYAMTMHAPDGTRLVGFDNAHQVEGKRRAEHDHKHRLRTVKPYAYRDAPSLVADFW
SEVEAVMREKGVWL"
gene 1857..2474
/locus_tag="CAP2UW1_4478"
/db_xref="GeneID:8401829"
CDS 1857..2474
/locus_tag="CAP2UW1_4478"
/note="PFAM: Cobyrinic acid ac-diamide synthase;
KEGG: net:Neut_2584 cobyrinic acid a,c-diamide synthase"
/codon_start=1
/transl_table=11
/product="Cobyrinic acid ac-diamide synthase"
/protein_id="YP_003162892.1"
/db_xref="GI:257074495"
/db_xref="InterPro:IPR002586"
/db_xref="GeneID:8401829"
/translation="MKTIAFLSQKGGSGKTTLAVHTAVAALEDGQRVVIVDTDIQRSA
TMWSEAREAETPVVAAVPAAELDAVINAARHDAMTLCIIDTAPHAAPDAARVARAVDL
VVIPCRPAAFDLAAAGSAVEVVKAAGARAVFVLSACPFRSPEIAETRTVLEGYGLPVA
PAEITDRRAFARAVATGRAVTEFDAHGKAADEIRAFWNWLKEQMK"
misc_feature 1860..2462
/locus_tag="CAP2UW1_4478"
/note="ParA-like protein; Provisional; Region: PHA02518"
/db_xref="CDD:222854"
misc_feature 1863..>2222
/locus_tag="CAP2UW1_4478"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:238997"
misc_feature 1884..1904
/locus_tag="CAP2UW1_4478"
/note="P-loop; other site"
/db_xref="CDD:238997"
misc_feature order(1902..1904,2106..2108)
/locus_tag="CAP2UW1_4478"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:238997"
gene 2471..2740
/locus_tag="CAP2UW1_4479"
/db_xref="GeneID:8401830"
CDS 2471..2740
/locus_tag="CAP2UW1_4479"
/note="KEGG: net:Neut_2585 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162893.1"
/db_xref="GI:257074496"
/db_xref="GeneID:8401830"
/translation="MTKQTTGLAAFTTRKTTVSSDLTSATHTTSPTERRRGKGEVVAL
TVRLTRAEWERVHQLAVSEGTSIQQLALKGLSKVFTEKGLPGIAK"
gene 2826..3659
/locus_tag="CAP2UW1_4480"
/db_xref="GeneID:8401831"
CDS 2826..3659
/locus_tag="CAP2UW1_4480"
/note="KEGG: pna:Pnap_2499 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162894.1"
/db_xref="GI:257074497"
/db_xref="GeneID:8401831"
/translation="MSDNGAKPLMDTVERIMEKARQREATQPLQLPLWPEPKRGTPNS
FIRSALFAAIQSKDRVFLKEATLASQKGIAVKFTGEQLNQEDLSVWETLAHLARQHPL
GCMCEFTAHGLLKSLGQHTGQTQHKQLHSTIIRLTACAVEITHEGKTYFGQLVKSGLK
DELTSHYRIELNRELIRLFGENQWTALDWQQRQRLRGKLLAQALHAFYSSHRQPFPIK
LDTLRGYVGSRNVQRAGFKVKLRIALDELVTIGFLTSYDITGDTVTVSRTLAALPKTN
E"
misc_feature 2892..3626
/locus_tag="CAP2UW1_4480"
/note="TrfA protein; Region: TrfA; pfam07042"
/db_xref="CDD:115680"
gene complement(4182..4385)
/locus_tag="CAP2UW1_4481"
/pseudo
/db_xref="GeneID:8401832"
gene complement(4425..4622)
/locus_tag="CAP2UW1_4482"
/pseudo
/db_xref="GeneID:8401866"
gene 4867..5124
/locus_tag="CAP2UW1_4483"
/db_xref="GeneID:8401867"
CDS 4867..5124
/locus_tag="CAP2UW1_4483"
/note="KEGG: rpe:RPE_1775 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162895.1"
/db_xref="GI:257074498"
/db_xref="GeneID:8401867"
/translation="MKKQLPRLPTDKAAEDFVATADLTDYDLSSMTPMHFEFQPKDRT
ITMRLSESLFEAIREEADRSGMPYQRFIRKALEEAVHQPST"
misc_feature 4867..5115
/locus_tag="CAP2UW1_4483"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG5304"
/db_xref="CDD:227620"
gene complement(5125..5412)
/locus_tag="CAP2UW1_4484"
/db_xref="GeneID:8401833"
CDS complement(5125..5412)
/locus_tag="CAP2UW1_4484"
/note="TIGRFAM: integration host factor, beta subunit;
PFAM: histone family protein DNA-binding protein;
KEGG: mfa:Mfla_1070 integration host factor, beta subunit"
/codon_start=1
/transl_table=11
/product="integration host factor, beta subunit"
/protein_id="YP_003162896.1"
/db_xref="GI:257074499"
/db_xref="InterPro:IPR000119"
/db_xref="InterPro:IPR005685"
/db_xref="GeneID:8401833"
/translation="MTRSELIAQITARSAALTVKDVETAVKAIFEGMTETLANGERIE
IRGFGSFRLAYRPPRIGRNPMTGDTVPVPAKAVPHFKAGRELAARVNSDKG"
misc_feature complement(5155..5409)
/locus_tag="CAP2UW1_4484"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:238332"
misc_feature complement(order(5161..5163,5170..5172,5176..5178,
5188..5190,5218..5229,5236..5238,5242..5247,5251..5253,
5263..5265,5272..5277,5281..5283,5287..5289,5332..5334,
5401..5409))
/locus_tag="CAP2UW1_4484"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:238332"
misc_feature complement(order(5167..5169,5173..5175,5185..5190,
5254..5256,5269..5274,5281..5295,5305..5310,5317..5322,
5329..5331,5371..5373,5386..5388,5395..5397,5404..5409))
/locus_tag="CAP2UW1_4484"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:238332"
gene 5666..6313
/locus_tag="CAP2UW1_4485"
/db_xref="GeneID:8401834"
CDS 5666..6313
/locus_tag="CAP2UW1_4485"
/note="KEGG: ajs:Ajs_4307 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162897.1"
/db_xref="GI:257074500"
/db_xref="GeneID:8401834"
/translation="MAKAVVTQERVFEVAQALTDQGTAPTILNVQEGIGGGSYTTVKR
YLDQWREAAPKQRQPVELPEPAVARLMSLGREFWGLLDEQAGQQVEALRTATREEVAA
IQTQLDQAEQAIGRLEAEREQADNHAAAQEQALREAVAARAAQTERMAAAEAKAGELA
ARVEDLKGELERAHARQTAEREAVTAARAEAQAAAVEAARLQGELAALKKPRSSA"
misc_feature 5681..6034
/locus_tag="CAP2UW1_4485"
/note="Plasmid replication region DNA-binding N-term;
Region: KfrA_N; pfam11740"
/db_xref="CDD:221198"
gene complement(6986..7198)
/locus_tag="CAP2UW1_4486"
/pseudo
/db_xref="GeneID:8401835"
gene complement(7536..8684)
/locus_tag="CAP2UW1_4487"
/db_xref="GeneID:8401868"
CDS complement(7536..8684)
/locus_tag="CAP2UW1_4487"
/note="KEGG: ptr:467889 zinc finger protein 597"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162898.1"
/db_xref="GI:257074501"
/db_xref="GeneID:8401868"
/translation="MGWIKRLVGGTDGVREAIREKYEFLASQNRAAISETESIHAFSL
HNTMGMRYAERGTIWATAMHVSCDIAPFLLMRESESVDALVEYILLQDQVSGCRKEWL
RLLLNNAILNPAVIPPKPILLELADSISRIGYEHTHWYKLLDSPAKNVVSIYMFVDMY
EKEKARNDGIIGNVQVTESVPSLAKLSTPADSIKSENPIYEYGENFNEMLAGVIKEAL
ALAGPKAFNKTFELYPVTLTNAATFTGLKLDLPEKVAVALMIKREADAFDKQPSIDTQ
AWNERSNEHSRLRKYVAGLTAAFGGQTESFYEELNALLPPCENHILLIDSSASHSARE
FSDIYVTRIEGGNAIFRCPECSQNMTAPSHKFLNIKCRKCNNKFQIHT"
gene complement(8763..9320)
/locus_tag="CAP2UW1_4488"
/db_xref="GeneID:8401836"
CDS complement(8763..9320)
/locus_tag="CAP2UW1_4488"
/note="KEGG: ddi:DDBDRAFT_0204634 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162899.1"
/db_xref="GI:257074502"
/db_xref="GeneID:8401836"
/translation="MKHSTIAASVLSLALFLTGSAYSQSIYKCRNAAGKIEISDNLCR
ADSKTEAIRDGSAISESRRQEAAQVSAANRSLAAKQENERTPAPMQSSSAVCDAASQA
ANGGGNLPMGRKSQLIEACNATSKNPSKPACQELASVALNGTSRQGQFSSLLELCDGG
ESRTKAQQRPCAYAQDINCVKTTNF"
sig_peptide complement(9249..9320)
/locus_tag="CAP2UW1_4488"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 1.000) with cleavage site probability 0.989 at
residue 24"
misc_feature complement(9117..9284)
/locus_tag="CAP2UW1_4488"
/note="Domain of unknown function (DUF4124); Region:
DUF4124; pfam13511"
/db_xref="CDD:222187"
gene complement(9415..9582)
/locus_tag="CAP2UW1_4489"
/pseudo
/db_xref="GeneID:8401837"
gene complement(9714..10976)
/locus_tag="CAP2UW1_4490"
/pseudo
/db_xref="GeneID:8401869"
gene complement(10447..10650)
/locus_tag="CAP2UW1_4491"
/pseudo
/db_xref="GeneID:8401870"
gene 11020..11196
/locus_tag="CAP2UW1_4492"
/db_xref="GeneID:8401871"
CDS 11020..11196
/locus_tag="CAP2UW1_4492"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162900.1"
/db_xref="GI:257074503"
/db_xref="GeneID:8401871"
/translation="MLILETGFLVTRRSKKLPPAHQKTGRFLGEPHCEMTDVSPPSRV
RKATFLQAFGTEIS"
gene complement(11377..11724)
/locus_tag="CAP2UW1_4493"
/pseudo
/db_xref="GeneID:8401838"
gene complement(11755..12372)
/locus_tag="CAP2UW1_4494"
/db_xref="GeneID:8401872"
CDS complement(11755..12372)
/locus_tag="CAP2UW1_4494"
/note="PFAM: Resolvase domain; Resolvase helix-turn-helix
domain protein;
KEGG: reu:Reut_D6519 resolvase"
/codon_start=1
/transl_table=11
/product="Resolvase domain protein"
/protein_id="YP_003162901.1"
/db_xref="GI:257074504"
/db_xref="InterPro:IPR006118"
/db_xref="InterPro:IPR006119"
/db_xref="InterPro:IPR006120"
/db_xref="GeneID:8401872"
/translation="MKVARIYLRVSTDEQDLTRQAEIEHSTRAADYYVAGVYREKASG
ARADRPELLRMIADLQPGEVVVAEKIDRISRLPLAEAEQLVGSIRAKGARLAVPGLVD
LSDLAADADGVAKIVLESVQELLLKLALQMARDDYETRRERQRQGVQLAKASGKYTGR
KPDATTHQRIVALRQAGHTIQKTAKLAGCSESQVKRIWAMHQGKP"
misc_feature complement(11779..12372)
/locus_tag="CAP2UW1_4494"
/note="Site-specific recombinases, DNA invertase Pin
homologs [DNA replication, recombination, and repair];
Region: PinR; COG1961"
/db_xref="CDD:224872"
misc_feature complement(11932..12363)
/locus_tag="CAP2UW1_4494"
/note="Serine Recombinase family, catalytic domain; a DNA
binding domain may be present either N- or C-terminal to
the catalytic domain. These enzymes perform site-specific
recombination of DNA molecules by a concerted, four-strand
cleavage and rejoining...; Region: Ser_Recombinase;
cl02788"
/db_xref="CDD:243186"
misc_feature complement(order(12148..12150,12157..12162,12340..12342,
12346..12348))
/locus_tag="CAP2UW1_4494"
/note="catalytic residues [active]"
/db_xref="CDD:238206"
misc_feature complement(12340..12342)
/locus_tag="CAP2UW1_4494"
/note="catalytic nucleophile [active]"
/db_xref="CDD:238206"
misc_feature complement(11776..11898)
/locus_tag="CAP2UW1_4494"
/note="Helix-turn-helix domain of Hin and related
proteins, a family of DNA-binding domains unique to
bacteria and represented by the Hin protein of Salmonella.
The basic HTH domain is a simple fold comprised of three
core helices that form a right-handed...; Region:
HTH_Hin_like; cl17393"
/db_xref="CDD:247947"
gene 12565..12858
/locus_tag="CAP2UW1_4495"
/db_xref="GeneID:8401839"
CDS 12565..12858
/locus_tag="CAP2UW1_4495"
/note="PFAM: SpoVT/AbrB domain protein;
KEGG: abo:ABO_2076 hypothetical protein"
/codon_start=1
/transl_table=11
/product="SpoVT/AbrB domain protein"
/protein_id="YP_003162902.1"
/db_xref="GI:257074505"
/db_xref="InterPro:IPR007159"
/db_xref="GeneID:8401839"
/translation="MIETRVAKLFKNGASQAVRLPSDFRFEGDEVYVTRDDATGDVVL
SNRPGAKTWNEFFELLHEVDVPADFMAERPLNVLPQERGIFDDDLSTNHTVSR"
misc_feature 12580..12819
/locus_tag="CAP2UW1_4495"
/note="Virulence-associated protein and related proteins
[Function unknown]; Region: VagC; COG4456"
/db_xref="CDD:226863"
gene 12861..13262
/locus_tag="CAP2UW1_4496"
/db_xref="GeneID:8401840"
CDS 12861..13262
/locus_tag="CAP2UW1_4496"
/note="PFAM: PilT protein domain protein;
KEGG: dac:Daci_3757 PilT protein domain protein"
/codon_start=1
/transl_table=11
/product="PilT protein domain protein"
/protein_id="YP_003162903.1"
/db_xref="GI:257074506"
/db_xref="InterPro:IPR002016"
/db_xref="InterPro:IPR002716"
/db_xref="GeneID:8401840"
/translation="MLHMLDTDTASYLIKGKSRAIEAKLAALMPSMVCISVMTRAELQ
YGLKRLAGDHRLHLAVRQFLKIVRILPWDADAADWYAEIRHQLVSTGQPIGELDMMIA
AHSLSAGAVLVTNNSRHYERIAAPLILDNWA"
misc_feature 12870..13229
/locus_tag="CAP2UW1_4496"
/note="PIN domain of ribonucleases (toxins), VapC and
FitB, of prokaryotic toxin/antitoxin operons, Pyrococcus
horikoshii protein PH0500, and other similar bacterial and
archaeal homologs; Region: PIN_VapC-FitB; cd09881"
/db_xref="CDD:189051"
misc_feature order(12873..12881,12888..12893,12897..12905,12927..12929,
12936..12938,12957..12959,12969..12974,12978..12986,
12990..12998,13032..13034,13041..13043,13065..13067,
13071..13079,13092..13094,13098..13103,13110..13115,
13122..13124,13143..13145,13149..13154,13158..13163,
13218..13220)
/locus_tag="CAP2UW1_4496"
/note="oligomeric interface; other site"
/db_xref="CDD:189051"
misc_feature order(12876..12878,12984..12986,13152..13154,13206..13208)
/locus_tag="CAP2UW1_4496"
/note="putative active site [active]"
/db_xref="CDD:189051"
misc_feature order(12969..12974,12981..12986,12990..12995,13035..13040,
13047..13049,13074..13076,13089..13094,13098..13106,
13110..13115,13146..13151,13155..13157)
/locus_tag="CAP2UW1_4496"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:189051"
gene complement(14126..15568)
/locus_tag="CAP2UW1_4497"
/db_xref="GeneID:8401841"
CDS complement(14126..15568)
/locus_tag="CAP2UW1_4497"
/note="KEGG: pde:Pden_0112 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162904.1"
/db_xref="GI:257074507"
/db_xref="GeneID:8401841"
/translation="MKLIQDFNTFLVYTVNLNSTRFGQLENGIEAIKTSVRGLNWKPT
IVGFAAHGSWAHKTIIKPLSGDPFDVDLLVYVKPVARWEAKDYINELYAEMGKRGLYK
DKIRRYSHCITIEYAGERKIDVAPCVKERLQSGAWEVCNRGTNSFEKSNPLDYTNWLI
ERNAISGSNNFRKTTRLLKYLRDIKTNFTCPSFLLTTLLGMQVYASDKGTPGFVDVPT
TLKTLIDRLDDWLQANPSKPTVRNPVLFEEIQSNAWDDTKYSNFRAKVNLYRGWIDDA
YDEPDKEESIGKWQRVFGDDFAVREAEEKASKVSEVALAAIRGTPLLEGVGDLVALVK
KIGRAALPSGFDRLPHMRRPRWRNVLGTRLSVNVGAQLWTARDGQQLHTLRSLEPLTS
GFWVRFNARNNQGLPFPDTYKVEWRVTNTDEVARRANALRGDYYRSDSSGVRWEQLSY
RGVHMVEAFLIRKTDDVLLGKSEPFYVVIE"
misc_feature complement(15092..15505)
/locus_tag="CAP2UW1_4497"
/note="Nucleotidyltransferase (NT) domain of
2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I
CCA-adding enzyme; Region: NT_2-5OAS_ClassI-CCAase;
cd05400"
/db_xref="CDD:143390"
misc_feature complement(order(15107..15109,15116..15118,15128..15130,
15200..15202,15236..15238,15245..15250,15356..15358,
15362..15364,15389..15397,15401..15403,15410..15418))
/locus_tag="CAP2UW1_4497"
/note="active site"
/db_xref="CDD:143390"
misc_feature complement(order(15107..15109,15116..15118,15128..15130,
15245..15247,15356..15358,15362..15364,15410..15415))
/locus_tag="CAP2UW1_4497"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143390"
misc_feature complement(order(15200..15202,15356..15358,15362..15364))
/locus_tag="CAP2UW1_4497"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143390"
gene complement(15565..16500)
/locus_tag="CAP2UW1_4498"
/db_xref="GeneID:8401842"
CDS complement(15565..16500)
/locus_tag="CAP2UW1_4498"
/note="KEGG: pde:Pden_0111 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162905.1"
/db_xref="GI:257074508"
/db_xref="GeneID:8401842"
/translation="MNEIDKQQVQPRMLNLLRARTLIYRRAKNYQAVGLVISLGLPLV
GLAAAALFSASKPFIALFALTFSYLEVLFFDPWLRTQLKTAAKLQEDFDCTLLGMDWN
VFLAGSRVDPEQVFEDACRTLSAKDEKRLLDWYPLTVNALPLHLARLVCQRTNIWYDS
ALRKRYRMVLLFGAVAIMFFVGMGSLWIDTTITSFVLSTLAPMTPMMIWALRERNRHA
ATCELLDRLNEDVKKLFDKSRAGATEQEISMRSRELQDAIYNHRVSSPLIFDWIYNRL
RSQMEERMNAGAQELVDQLRLTPAPMTMTTKWDEK"
sig_peptide complement(16351..16500)
/locus_tag="CAP2UW1_4498"
/note="Signal predicted by SignalP 3.0 HMM (Signal peptide
probability 0.679) with cleavage site probability 0.351 at
residue 50"
gene complement(16549..17004)
/locus_tag="CAP2UW1_4499"
/db_xref="GeneID:8401843"
CDS complement(16549..17004)
/locus_tag="CAP2UW1_4499"
/note="KEGG: pol:Bpro_1540 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162906.1"
/db_xref="GI:257074509"
/db_xref="GeneID:8401843"
/translation="MTRYPIAPTPTLAQRALELRALPLDGARLVFFSGRALHYRFRLA
PSEFGRIYTCELRLTPDARAPEMFVLDPDLKTLADEEALPHIYPSKGVGTKLCLWWPK
QREWLPQMKLSETYIPWTSEWLWYFEDWLATGTWSGGGNHPRIRVTRWA"
gene complement(17004..18263)
/locus_tag="CAP2UW1_4500"
/db_xref="GeneID:8401844"
CDS complement(17004..18263)
/locus_tag="CAP2UW1_4500"
/note="KEGG: bpl:BURPS1106A_0094 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162907.1"
/db_xref="GI:257074510"
/db_xref="GeneID:8401844"
/translation="MICEPVTLPQRPLISTRSSARFFHLVDAIARANEPTPTQLTALE
RSYNSTGEFLSGCSEFHGDLIQIHAHGSRQLGTIVRPRDGSREGFDIDLIARLTPEAR
RKYEGDRGPALLLDRLHGVLSRYAEAHGLQLHRWERCATLEYSDGMFADIAPVIDAPL
LAAPFGDTHGLIPDRELRRFDSTNPRGYAKHFDLAAAISPNFTAALSFSEAMDSVTRA
DVTPLPDAQEVFGRLLCRLVQLLKLHRNEAFGVVQVGQDMAPSSVFLTTLAAMAYAVE
APQPHESPLELLLDIVVRMPLHFERISRPDGTEEWVLPNPSAPKDNLAASMNLPARQE
AFFFWHRRLISDLNRILNAIEHHEGMDVLLKALQAAFGSHSAGAIQQAQAERQSASRA
AGRVTLISSVAAAPINVPVRSHTYFGR"
misc_feature complement(17682..18149)
/locus_tag="CAP2UW1_4500"
/note="Nucleotidyltransferase (NT) domain of
2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I
CCA-adding enzyme; Region: NT_2-5OAS_ClassI-CCAase;
cd05400"
/db_xref="CDD:143390"
misc_feature complement(order(17703..17705,17712..17714,17724..17726,
17811..17813,17847..17849,17856..17861,17988..17990,
17994..17996,18027..18035,18039..18041,18048..18056))
/locus_tag="CAP2UW1_4500"
/note="active site"
/db_xref="CDD:143390"
misc_feature complement(order(17703..17705,17712..17714,17724..17726,
17856..17858,17988..17990,17994..17996,18048..18053))
/locus_tag="CAP2UW1_4500"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143390"
misc_feature complement(order(17811..17813,17988..17990,17994..17996))
/locus_tag="CAP2UW1_4500"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143390"
gene complement(18322..18486)
/locus_tag="CAP2UW1_4501"
/db_xref="GeneID:8401845"
CDS complement(18322..18486)
/locus_tag="CAP2UW1_4501"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162908.1"
/db_xref="GI:257074511"
/db_xref="GeneID:8401845"
/translation="MSKILKPGTPAPRSGQYKNPGTGNEVTGVKGKPLPPTPRPGQGY
TLVDPTKHKR"
gene 18659..18985
/locus_tag="CAP2UW1_4502"
/db_xref="GeneID:8401846"
CDS 18659..18985
/locus_tag="CAP2UW1_4502"
/note="PFAM: helix-turn-helix domain protein;
KEGG: bpl:BURPS1106A_0095 transcriptional regulator, XRE
family"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_003162909.1"
/db_xref="GI:257074512"
/db_xref="InterPro:IPR001387"
/db_xref="GeneID:8401846"
/translation="MPALGEKVRALRKKAGLTLEQFAEQIGASKSSVWELENKEKARP
SADRIHEVAKVLGVTPEFLMNDDVAEPSIDVADEAFFRKYQSLDNGVKQQLQEILSVL
DKKAGP"
misc_feature 18668..>18895
/locus_tag="CAP2UW1_4502"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:224314"
misc_feature 18671..18847
/locus_tag="CAP2UW1_4502"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:238045"
misc_feature order(18683..18685,18695..18697,18770..18772)
/locus_tag="CAP2UW1_4502"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:238045"
misc_feature order(18692..18694,18767..18769)
/locus_tag="CAP2UW1_4502"
/note="salt bridge; other site"
/db_xref="CDD:238045"
misc_feature order(18713..18718,18749..18751,18758..18760,18770..18772,
18776..18778)
/locus_tag="CAP2UW1_4502"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:238045"
gene 19021..19179
/locus_tag="CAP2UW1_4503"
/db_xref="GeneID:8401847"
CDS 19021..19179
/locus_tag="CAP2UW1_4503"
/note="KEGG: bpl:BURPS1106A_0096 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162910.1"
/db_xref="GI:257074513"
/db_xref="GeneID:8401847"
/translation="MARLWRAVHGLTFPINAGALAQEWSRNVVPEAPIGELQAKEGSS
QKTENKAR"
gene complement(19176..22142)
/locus_tag="CAP2UW1_4504"
/db_xref="GeneID:8401848"
CDS complement(19176..22142)
/locus_tag="CAP2UW1_4504"
/note="PFAM: transposase Tn3 family protein;
KEGG: asa:ASA_P4G106 TnpA transposase"
/codon_start=1
/transl_table=11
/product="transposase Tn3 family protein"
/protein_id="YP_003162911.1"
/db_xref="GI:257074514"
/db_xref="InterPro:IPR002513"
/db_xref="GeneID:8401848"
/translation="MPRRSILSAAERESLLALPDTKDDLIRHYSLSDSDLSIIRQRRG
PANRLGFAVQLCYLRFPGILLGVDQPLFLPLLKLVADQLKVGVESWNDYGQREQTRRE
HLVELQTVFGFQPFTMSHYRQAVHTLTELAMQTDKGIVLASALIEQLRRQSIILPALN
AIERASAEAITRANRRIYEALSEPLSNGHRHRLDDLLKRRDNGKMTWLAWLRQSPVKP
NSRHMLEHIERLKAWQALDLPSGIERLVHQNRLLKIAREGGQMTPADLAKFEPRRRYA
TLVALAIEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLYGRIG
QALIDAKQSGRDPFAAIEAVMSWDAFAESVTEAQKLAQPDDFDFLHRIGESYATLRRY
APEFLAVLKLRAAPAAKGVLDAIEVLRGMNTDNARKVPTDAPTDFIKPRWQKLVMTDA
GIDRRYYELCALSELKNSLRSGDIWVQGSRQFKDFEDYLVPPDKFTSLKQSSTLPLAV
VTDCDQYLHDRLTLLETQLATVNRMAAANDLPDAIITESGLKITPLDAAVPDTAQALI
DQTAMILPHVKITELLLEVDEWTGFTRHFTHLKSGDLAKDKNLLLTTILADAINLGLT
KMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFRHPFAEHWGDGTTSSSDGQ
NFRTGSKAESTGHINPKYGSSPGRTFYTHISDQYAPFHTKVVNVGVRDSTYVLDGLLY
HESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLYISKGETAYDALKP
MIGGTLNIKHVRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRI
ERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASG
LNLVTAAVVLWNTVYLERAAQALRGNGHTVDNALLQYLSPLGWEHINLTGDYLWRSSA
KIGAGKFRPLRPLQPA"
misc_feature complement(21633..22082)
/locus_tag="CAP2UW1_4504"
/note="Domain of unknown function (DUF4158); Region:
DUF4158; pfam13700"
/db_xref="CDD:222325"
misc_feature complement(19245..20405)
/locus_tag="CAP2UW1_4504"
/note="Tn3 transposase DDE domain; Region: DDE_Tnp_Tn3;
pfam01526"
/db_xref="CDD:216552"
gene complement(22145..22705)
/locus_tag="CAP2UW1_4505"
/db_xref="GeneID:8401849"
CDS complement(22145..22705)
/locus_tag="CAP2UW1_4505"
/note="PFAM: Resolvase domain; Resolvase helix-turn-helix
domain protein;
KEGG: rme:Rmet_6187 resolvase-like protein"
/codon_start=1
/transl_table=11
/product="Resolvase domain protein"
/protein_id="YP_003162912.1"
/db_xref="GI:257074515"
/db_xref="InterPro:IPR006118"
/db_xref="InterPro:IPR006119"
/db_xref="InterPro:IPR006120"
/db_xref="GeneID:8401849"
/translation="MKGQRIGYVRVSSFDQNPDRQLEQVQVDKVFTDKASGKDTLRPQ
LDTLLTFVREGDTVVVHSMDRLARNLDDLRRLVQKLTKRGVRIEFVKECLTFTGEDSP
MANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKALSPERAAELRQRADA
GEQKSKLAREFGVSRETLYQYLRTDQ"
misc_feature complement(22319..22693)
/locus_tag="CAP2UW1_4505"
/note="Serine Recombinase (SR) family, Resolvase and
Invertase subfamily, catalytic domain; members contain a
C-terminal DNA binding domain. Serine recombinases
catalyze site-specific recombination of DNA molecules by a
concerted, four-strand cleavage and...; Region: SR_ResInv;
cd03768"
/db_xref="CDD:239737"
misc_feature complement(22154..22690)
/locus_tag="CAP2UW1_4505"
/note="multiple promoter invertase; Provisional; Region:
mpi; PRK13413"
/db_xref="CDD:184041"
misc_feature complement(order(22502..22504,22511..22516,22670..22672,
22676..22678))
/locus_tag="CAP2UW1_4505"
/note="catalytic residues [active]"
/db_xref="CDD:239737"
misc_feature complement(22670..22672)
/locus_tag="CAP2UW1_4505"
/note="catalytic nucleophile [active]"
/db_xref="CDD:239737"
misc_feature complement(order(22352..22354,22364..22369,22373..22378,
22517..22519))
/locus_tag="CAP2UW1_4505"
/note="Presynaptic Site I dimer interface [polypeptide
binding]; other site"
/db_xref="CDD:239737"
misc_feature complement(order(22346..22348,22355..22357,22364..22369,
22376..22381,22388..22390,22481..22486,22499..22501))
/locus_tag="CAP2UW1_4505"
/note="Synaptic Antiparallel dimer interface [polypeptide
binding]; other site"
/db_xref="CDD:239737"
misc_feature complement(order(22331..22333,22343..22345,22352..22354,
22364..22366,22373..22378,22385..22390,22424..22432))
/locus_tag="CAP2UW1_4505"
/note="Synaptic Flat tetramer interface [polypeptide
binding]; other site"
/db_xref="CDD:239737"
misc_feature complement(order(22331..22333,22343..22345,22352..22354,
22364..22366,22373..22375,22430..22432))
/locus_tag="CAP2UW1_4505"
/note="Synaptic Site I dimer interface [polypeptide
binding]; other site"
/db_xref="CDD:239737"
misc_feature complement(order(22328..22333,22349..22351))
/locus_tag="CAP2UW1_4505"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:239737"
misc_feature complement(22160..22285)
/locus_tag="CAP2UW1_4505"
/note="Helix-turn-helix domain of Hin and related
proteins, a family of DNA-binding domains unique to
bacteria and represented by the Hin protein of Salmonella.
The basic HTH domain is a simple fold comprised of three
core helices that form a right-handed...; Region:
HTH_Hin_like; cd00569"
/db_xref="CDD:119388"
misc_feature complement(order(22163..22171,22175..22180,22274..22282))
/locus_tag="CAP2UW1_4505"
/note="DNA-binding interface [nucleotide binding]; DNA
binding site"
/db_xref="CDD:119388"
gene complement(22835..23914)
/locus_tag="CAP2UW1_4506"
/db_xref="GeneID:8401850"
CDS complement(22835..23914)
/locus_tag="CAP2UW1_4506"
/note="TIGRFAM: lipoprotein signal peptidase;
PFAM: phosphoesterase PA-phosphatase related; peptidase A8
signal peptidase II;
KEGG: shn:Shewana3_4320 Signal peptidase II. Aspartic
peptidase. MEROPS family A08"
/codon_start=1
/transl_table=11
/product="lipoprotein signal peptidase"
/protein_id="YP_003162913.1"
/db_xref="GI:257074516"
/db_xref="InterPro:IPR000326"
/db_xref="InterPro:IPR001872"
/db_xref="GeneID:8401850"
/translation="MSWKFFLYDWGGLNIALFQAINMSTPAALEPPVSFFNLVIGNYW
TAPLMLLAMWGWSKSAPDPTRADAIRYRLRVFSVAFALAFLVATILKLWIDFPRPPAV
FGDMVRVIGGIERHYSLPSGHATYAALVVGALWPLIGRRGRIGLVLYAALVGWSRIAA
GMHFPADVLAGWVLGLSCTALAGWLMPLAAPVWQSARRTSTWVWFAVAASSVMTDQLA
KFAITRTFAYGEQVEVSTFFNIVHVLNPGAAFSFLANAGGWQRYFLMALGLVVSAWLG
RMLCQQRPRLEAVGYSLILGGALGNVVDRVLRGSVVDFLDFHWQLVHWPAFNLADVAI
TIGALCLFLTVVPKSSRGTEADVSG"
misc_feature complement(23369..23653)
/locus_tag="CAP2UW1_4506"
/note="PAP2_like proteins, a super-family of histidine
phosphatases and vanadium haloperoxidases, includes type 2
phosphatidic acid phosphatase or lipid phosphate
phosphatase (LPP), Glucose-6-phosphatase,
Phosphatidylglycerophosphatase B and bacterial acid...;
Region: PAP2_like; cd01610"
/db_xref="CDD:238813"
misc_feature complement(23342..>23647)
/locus_tag="CAP2UW1_4506"
/note="Membrane-associated phospholipid phosphatase [Lipid
metabolism]; Region: PgpB; COG0671"
/db_xref="CDD:223743"
misc_feature complement(order(23414..23416,23426..23428,23444..23446,
23546..23554,23621..23623,23642..23644))
/locus_tag="CAP2UW1_4506"
/note="active site"
/db_xref="CDD:238813"
misc_feature complement(22886..23323)
/locus_tag="CAP2UW1_4506"
/note="lipoprotein signal peptidase; Reviewed; Region:
lspA; PRK00376"
/db_xref="CDD:234739"
misc_feature complement(22886..23308)
/locus_tag="CAP2UW1_4506"
/note="lipoprotein signal peptidase; Provisional; Region:
PRK14787"
/db_xref="CDD:173248"
gene complement(23911..26316)
/locus_tag="CAP2UW1_4507"
/db_xref="GeneID:8401851"
CDS complement(23911..26316)
/locus_tag="CAP2UW1_4507"
/note="TIGRFAM: ATPase, P-type (transporting), HAD
superfamily, subfamily IC; cadmium-translocating P-type
ATPase; heavy metal translocating P-type ATPase;
PFAM: Haloacid dehalogenase domain protein hydrolase;
E1-E2 ATPase-associated domain protein;
KEGG: sfr:Sfri_3462 heavy metal translocating P-type
ATPase"
/codon_start=1
/transl_table=11
/product="heavy metal translocating P-type ATPase"
/protein_id="YP_003162914.1"
/db_xref="GI:257074517"
/db_xref="InterPro:IPR000150"
/db_xref="InterPro:IPR001366"
/db_xref="InterPro:IPR001757"
/db_xref="InterPro:IPR005834"
/db_xref="InterPro:IPR006121"
/db_xref="InterPro:IPR006404"
/db_xref="InterPro:IPR006416"
/db_xref="InterPro:IPR008250"
/db_xref="GeneID:8401851"
/translation="MSECASTACGCSAGPIIQPTTQAPATTGSAQAVYRIENMDCPTE
EALIRGKLVGLAGVVGLEFNLMQRTLAVRHELPSLFPVEQALTAIGMQAVRMDQASTG
QTTKLSITKMDCPTEETLIRNKLGTMAGVADLDFNLMQRTLSVRHADQVLPDVLAALQ
ALGFEAQVLDTAEAASPSASLVTTPTNWWPLGISFVTASAAEAVYWLHNGNHWSVVVL
ALVAVFTGGLSTYKKGWIALKNRNLNMNALMSIAVTGAMLIGHWPEAAMVMVLFALAE
VIEAKSLDRARNAIRGLLDLTPEQATVQQADGTWREVGAKQIAIGSRVRVKPGERIAL
DGEVLEGRSAVNQAPITGESLPVEKSPGDPVFAGTINESGSFEYRVTAVASNSTLARI
IHAVEAAQGSRAPTQRFVDQFARWYTPIVFGVAIAVALLPPLFMGAAWLDWIYRALVL
LVVACPCALVISTPVSIVSGLAAAARHGILIKGGVYLEEGRKLRWLALDKTGTITHGK
PAQTDFVTWGNALAANSRSIAASLAARSDHPVSKAVAQAAQTDGVALLDVAEFSALPG
RGVQGQINGETYHLGNQRMLEALGQCTPELEQRIAALETMGKTVVMLVSAKGVHALFA
VADTIKESSRSAIAELHALGINTMMLTGDNPHTAQAIAAQAGIDSAQGNLLPDDKLRE
VELLAIKGKVGMVGDGINDAPALARADIGFAMGAAGTDTAIETADVALMDDNLGKIPT
FVRLSRATAQVLMQNIVLALGIKAVFLVLTFTGQATMWMAVFADMGASLLVVGNGLRL
LRK"
misc_feature complement(23953..26010)
/locus_tag="CAP2UW1_4507"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: ZntA; COG2217"
/db_xref="CDD:225127"
misc_feature complement(25822..25998)
/locus_tag="CAP2UW1_4507"
/note="Heavy-metal-associated domain; Region: HMA;
pfam00403"
/db_xref="CDD:215902"
misc_feature complement(order(25966..25968,25975..25983))
/locus_tag="CAP2UW1_4507"
/note="metal-binding site [ion binding]"
/db_xref="CDD:238219"
misc_feature complement(24850..25518)
/locus_tag="CAP2UW1_4507"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:215733"
misc_feature complement(24121..>24426)
/locus_tag="CAP2UW1_4507"
/note="Soluble P-type ATPase [General function prediction
only]; Region: COG4087"
/db_xref="CDD:226572"
gene 26400..26840
/locus_tag="CAP2UW1_4508"
/db_xref="GeneID:8401852"
CDS 26400..26840
/locus_tag="CAP2UW1_4508"
/note="TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional
regulator;
PFAM: regulatory protein MerR; Transcription regulator
MerR DNA binding;
KEGG: sfr:Sfri_3461 transcriptional regulator, MerR family
protein"
/codon_start=1
/transl_table=11
/product="transcriptional regulator, MerR family"
/protein_id="YP_003162915.1"
/db_xref="GI:257074518"
/db_xref="InterPro:IPR000551"
/db_xref="InterPro:IPR011791"
/db_xref="InterPro:IPR015358"
/db_xref="GeneID:8401852"
/translation="MEIRIGDLAKRSGCEVVTIRYYEKEGLLPKPARSGGNFRLYGEA
HIERLQFIRHCRSLDMTLSEIRALLGLRDNPMQDCGEVNTLLEAHIQQVEMRVSALLQ
LKRHLVDLREKCSGSRSVEACGILQGLGNCNCHGESATKSQTSG"
misc_feature 26406..26786
/locus_tag="CAP2UW1_4508"
/note="Cd(II)/Pb(II)-responsive transcriptional regulator;
Region: CadR-PbrR; TIGR02047"
/db_xref="CDD:131102"
misc_feature 26406..26786
/locus_tag="CAP2UW1_4508"
/note="Helix-Turn-Helix DNA binding domain of the CadR and
PbrR transcription regulators; Region: HTH_CadR-PbrR;
cd04784"
/db_xref="CDD:133411"
misc_feature order(26409..26417,26457..26459,26508..26516)
/locus_tag="CAP2UW1_4508"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133411"
misc_feature order(26550..26552,26559..26561,26571..26576,26601..26603,
26634..26639,26646..26648,26655..26657,26667..26669,
26685..26687,26697..26699,26706..26711,26730..26732,
26745..26750,26766..26768,26772..26774)
/locus_tag="CAP2UW1_4508"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133411"
misc_feature order(26634..26636,26739..26741,26766..26768)
/locus_tag="CAP2UW1_4508"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:133411"
gene 26994..27596
/locus_tag="CAP2UW1_4509"
/db_xref="GeneID:8401853"
CDS 26994..27596
/locus_tag="CAP2UW1_4509"
/note="KEGG: bpl:BURPS1106A_0096 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162916.1"
/db_xref="GI:257074519"
/db_xref="GeneID:8401853"
/translation="MAHEFGHYVLHRKLQEAFQCSQNATLGITGTRIEREADQFASYL
LMPIDDYTQQVRGRRITLDLLGECADRYGVSLTAVILKWLEFTDQAAVAVMGREGMLH
WWKASGSAKRYTFDALQVGMELPSDSFAVNPSIALSTTDYRSGVEHPEGVWPMKLPVR
EMAVLSDRYDMSLSLLIFDTPGVEHHDAPDEDMTTTPPTF"
misc_feature <26994..27245
/locus_tag="CAP2UW1_4509"
/note="Domain of unknown function (DUF955); Region:
DUF955; pfam06114"
/db_xref="CDD:147984"
gene 27764..28084
/locus_tag="CAP2UW1_4510"
/db_xref="GeneID:8401854"
CDS 27764..28084
/locus_tag="CAP2UW1_4510"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162917.1"
/db_xref="GI:257074520"
/db_xref="GeneID:8401854"
/translation="MSGSGGGGGGGFAPPDNCEAIVIDTQLSSPKPAVLAGIHVHDKL
DVTVQAGSGVESVVVLFNGEVAGGLASPEVRSLRECILRGTKYYAEVTDKNEGQVKVR
VRAK"
gene 28111..32583
/locus_tag="CAP2UW1_4511"
/pseudo
/db_xref="GeneID:8401855"
gene complement(28931..29128)
/locus_tag="CAP2UW1_4512"
/db_xref="GeneID:8401873"
CDS complement(28931..29128)
/locus_tag="CAP2UW1_4512"
/note="KEGG: cti:RALTA_p0541 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162918.1"
/db_xref="GI:257074521"
/db_xref="GeneID:8401873"
/translation="MKRRPHSLFPDGLSDESAAAISEFLHQLAAACEARYLVQLRRHR
SRQMNLYDPEAPWRIPPGEPF"
gene complement(29125..29919)
/locus_tag="CAP2UW1_4513"
/db_xref="GeneID:8401856"
CDS complement(29125..29919)
/locus_tag="CAP2UW1_4513"
/note="SMART: AAA ATPase;
KEGG: gka:GK1917 hypothetical protein"
/codon_start=1
/transl_table=11
/product="AAA ATPase"
/protein_id="YP_003162919.1"
/db_xref="GI:257074522"
/db_xref="InterPro:IPR003593"
/db_xref="GeneID:8401856"
/translation="MYLQHFGLRHPPLGKDAAELWDDGALAQLAERFQWLLQSPGLGL
LTGEAGVGKTAALRLVTAKLNPHRYQVIYHAETDFGRADLYRCLAQSLGLQPSYRRAQ
LWRDIKAHIHHLADAKQLLPVWILDEAQNLPPEFFRDFPAFLNFAFDSRDLITVWLVG
HPILAQTLERASYAALAGRIQARVHLRPVLERERFAQLVGHALKSAGCAHTLLTDSGL
ELLRQASKGLPRHAGRILRTAMRLAVPRALNHLPDDLLQAAIEELR"
misc_feature complement(29356..29853)
/locus_tag="CAP2UW1_4513"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(29416..29811)
/locus_tag="CAP2UW1_4513"
/note="AAA domain; Region: AAA_22; pfam13401"
/db_xref="CDD:222104"
misc_feature complement(29758..29781)
/locus_tag="CAP2UW1_4513"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(29437..29439,29539..29541,29755..29778))
/locus_tag="CAP2UW1_4513"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(29536..29553)
/locus_tag="CAP2UW1_4513"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(29383..29385)
/locus_tag="CAP2UW1_4513"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene complement(29922..31244)
/locus_tag="CAP2UW1_4514"
/db_xref="GeneID:8401857"
CDS complement(29922..31244)
/locus_tag="CAP2UW1_4514"
/note="PFAM: Integrase catalytic region;
KEGG: gka:GK0880 IS1604-like transposase"
/codon_start=1
/transl_table=11
/product="Integrase catalytic region"
/protein_id="YP_003162920.1"
/db_xref="GI:257074523"
/db_xref="InterPro:IPR001584"
/db_xref="GeneID:8401857"
/translation="MNRINPIALFRLSVLGSLTSRERLDHGELQQTIRALAEREYTIP
GTRRRHVAEKTIQGWYYTYLAQGIDGLTPKTRVDRGQSKLSQAIQTAILAAKRDNPRR
SIRQIRQLLEAAGTVARGSLSRSTVHRLLQQHGLSRISGSASLPEEKRSFVAASAGAI
WYGDVMHGPRVPHEGKLVKGYLVSLFDDASRLVAHSAFCPGETALDIEGVLKQALLKR
GLPIKLVVDNGAAYRAETLQGICARLGIHLIYCRPYAPEGKGKLERWHRTCRDQFLSE
LDERHINSFEDLNARLWAWLERVYHHTPHAGLDGMTPLARYQQDLSKIRSLGALAAQL
DALFRYRVSRRVRKDGTVSYQGARFEVPFELSGKTVCLVVDPHSGAVIEVEDEHGKGI
GAATPLDALGNLDRQRNKSDPTDAAPASPSGPNLIELTYRQYYDRKGD"
misc_feature complement(30840..>31094)
/locus_tag="CAP2UW1_4514"
/note="Winged helix-turn helix; Region: HTH_29; pfam13551"
/db_xref="CDD:222216"
misc_feature complement(30852..31082)
/locus_tag="CAP2UW1_4514"
/note="Homeodomain-like domain; Region: HTH_32; pfam13565"
/db_xref="CDD:222226"
misc_feature complement(30441..30773)
/locus_tag="CAP2UW1_4514"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
misc_feature complement(30348..>30590)
/locus_tag="CAP2UW1_4514"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:226950"
misc_feature complement(30306..30515)
/locus_tag="CAP2UW1_4514"
/note="Integrase core domain; Region: rve_3; pfam13683"
/db_xref="CDD:222316"
gene complement(31374..31898)
/locus_tag="CAP2UW1_4515"
/db_xref="GeneID:8401858"
CDS complement(31374..31898)
/locus_tag="CAP2UW1_4515"
/note="KEGG: drm:Dred_0563 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162921.1"
/db_xref="GI:257074524"
/db_xref="GeneID:8401858"
/translation="MQRIVAGITTLEQHVETTQKAAEVYRPKSCPHCGLGVVHQHGHY
ERKADRRAVPPRLNPIPILRYRCAGCRRTCSRLPECIAPRRWYDWSVQQQVLQQRLNG
AAEHPGGPPDRHTGARWWNWLQERGKDFVFHLRVRFAELGRAVDTHGFWHQVFNSLGL
PRAMFWLDQEMSVP"
gene 32580..33185
/locus_tag="CAP2UW1_4516"
/db_xref="GeneID:8401859"
CDS 32580..33185
/locus_tag="CAP2UW1_4516"
/note="PFAM: ExsB family protein;
KEGG: mlo:mll6423 hypothetical protein"
/codon_start=1
/transl_table=11
/product="ExsB family protein"
/protein_id="YP_003162922.1"
/db_xref="GI:257074525"
/db_xref="InterPro:IPR004479"
/db_xref="GeneID:8401859"
/translation="MTAALLLSGGMDSISIAWWKHPDIAITIDYGQLPAAAEITASQA
ICRRLRIPHHVLQVDCHSLGSGDMAGLEPNALAPATDWWPYRNQLLITLAAMKAVTLE
VRQLWLGTVASDASHRDGTPNFLSAMSALLAVQEGGLTVSAPAIGMSTVDLVRQSGVP
LEILAWAHSCHKADVACGACRGCNKYFEVLRELGNELVRSG"
misc_feature 32580..33161
/locus_tag="CAP2UW1_4516"
/note="Predicted PP-loop superfamily ATPase [General
function prediction only]; Region: COG0603"
/db_xref="CDD:223676"
misc_feature order(32595..32600,32607..32618,32670..32672,32676..32678)
/locus_tag="CAP2UW1_4516"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:238942"
gene 33163..33834
/locus_tag="CAP2UW1_4517"
/db_xref="GeneID:8401860"
CDS 33163..33834
/locus_tag="CAP2UW1_4517"
/note="KEGG: sat:SYN_00273 nitroreductase family protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162923.1"
/db_xref="GI:257074526"
/db_xref="GeneID:8401860"
/translation="MNWFDLGNPRPLPAPDPYIPIVWPDGEAVPLPAWQPGSVDELSF
AQLVARRRTRRSFGKLKSEHLGALLDLSCRVHQTGEASLGFPITRRPTPSAGAIHPIH
LLLINPGEATWYRYDAFTHALKAVKANSDPREARIAMEAIVPAADATLIVFAAEVGKV
AARYAHPASLIWRDAGVLLGFLAMSAEALDLSFCPLGVTGEPWVSQLLDEVGLVGVGV
AFAGS"
misc_feature 33307..33753
/locus_tag="CAP2UW1_4517"
/note="This family is the oxydase domain of NRPS
(non-ribosomal peptide synthetase) and other proteins that
modify polypeptides by cyclizing a thioester to form a
ring. These include epoB, part of the epothilone
biosynthesis pathway; tubD, part of the tubulysin...;
Region: mcbC-like_oxidoreductase; cd02142"
/db_xref="CDD:239056"
misc_feature order(33313..33315,33319..33321,33325..33327,33751..33753)
/locus_tag="CAP2UW1_4517"
/note="putative FMN binding site [chemical binding]; other
site"
/db_xref="CDD:239056"
misc_feature order(33325..33327,33436..33438)
/locus_tag="CAP2UW1_4517"
/note="NADPH bind site [chemical binding]; other site"
/db_xref="CDD:239056"
gene complement(33781..34644)
/locus_tag="CAP2UW1_4518"
/db_xref="GeneID:8401861"
CDS complement(33781..34644)
/locus_tag="CAP2UW1_4518"
/note="KEGG: mlo:mll6426 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162924.1"
/db_xref="GI:257074527"
/db_xref="GeneID:8401861"
/translation="MRQSAPVLLGHTVVQIDLPNAESDVLPGLPWGAIEAFPTPAYWA
YQVMARRVTSGPAKHRLGETLAQEVAACLLGGHGIPANVGLAAFQRLKSLGVLHSTPS
EADLFSLLSEPLQVNDRRIKYRFARQKASYLSSALARLASGSPPLDSGKSLRNWLLRS
PGIGLKTASWIARNWLTANDVAILDIHVLRAGALGGFFDESLTVERNYLELESQFLRF
SQAIGAWPSELDAVLWFEMTNSPLSVSELMGGRRSRVRPSVPDTASSGASSALRAGKS
YTDPHQANLIE"
misc_feature complement(33928..34458)
/locus_tag="CAP2UW1_4518"
/note="N-glycosylase/DNA lyase; Provisional; Region:
PRK01229"
/db_xref="CDD:234924"
misc_feature complement(33940..>34191)
/locus_tag="CAP2UW1_4518"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cl14786"
/db_xref="CDD:246713"
misc_feature complement(34144..34167)
/locus_tag="CAP2UW1_4518"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:238013"
misc_feature complement(order(33943..33945,33955..33957,34135..34137))
/locus_tag="CAP2UW1_4518"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238013"
misc_feature complement(34090..34092)
/locus_tag="CAP2UW1_4518"
/note="active site"
/db_xref="CDD:238013"
gene complement(34641..35318)
/locus_tag="CAP2UW1_4519"
/db_xref="GeneID:8401862"
CDS complement(34641..35318)
/locus_tag="CAP2UW1_4519"
/note="KEGG: reu:Reut_D6518 phage DNA methylase"
/codon_start=1
/transl_table=11
/product="phage DNA methylase"
/protein_id="YP_003162925.1"
/db_xref="GI:257074528"
/db_xref="InterPro:IPR002052"
/db_xref="GeneID:8401862"
/translation="MRYPGGKGKCFQRLINLMPPHSIYIESHLGGGAVMRNKRPARRN
IGIDADRSVIERWHRERPTPCELVHGDAVAFLERFTFSSGELVYSDPPYLAETRRNGK
IYRHEYSDRDHDRLLSILAALPCMVMVSGYDSELYREWLADWRLVTFSAKTHFGVRQE
CVWLNFEEPSELHDASFFGASFREREATKRRHSRMLGRFDQMNPVERNHVLQLLNERF
GNGHVTR"
misc_feature complement(<35151..35315)
/locus_tag="CAP2UW1_4519"
/note="D12 class N6 adenine-specific DNA
methyltransferase; Region: MethyltransfD12; cl17344"
/db_xref="CDD:247898"
misc_feature complement(34884..>35075)
/locus_tag="CAP2UW1_4519"
/note="Site-specific DNA methylase [DNA replication,
recombination, and repair]; Region: Dam; COG0338"
/db_xref="CDD:223415"
gene complement(35633..36250)
/locus_tag="CAP2UW1_4520"
/pseudo
/db_xref="GeneID:8401863"
gene complement(36471..37007)
/locus_tag="CAP2UW1_4521"
/db_xref="GeneID:8401874"
CDS complement(36471..37007)
/locus_tag="CAP2UW1_4521"
/note="KEGG: pna:Pnap_4763 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162926.1"
/db_xref="GI:257074529"
/db_xref="GeneID:8401874"
/translation="MNEFRRLAAKIDQHMQQFAAQGVSEAHAVINRMMGYVPDLHRIW
VGTTDQQLMALSREFPGFYRYARIMEEASEAERNKASRPYDGMAEFSEQHKQMGAQLL
TTAATLERGYQAFRASGNLQVFRPQLDDLGRLHRQWLSDLDAFKDSLRAQGAEPKVLE
YVNEVFGRLVEHIKQLSG"
gene complement(37019..37414)
/locus_tag="CAP2UW1_4522"
/db_xref="GeneID:8401864"
CDS complement(37019..37414)
/locus_tag="CAP2UW1_4522"
/note="KEGG: xcb:XC_2599 hypothetical protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003162927.1"
/db_xref="GI:257074530"
/db_xref="GeneID:8401864"
/translation="MKVAVDTNVLVRAVVLDDPVQANVAATVLTDAELIAVATPCLCE
FVWVLLRVYGFQQADAAGAIRALLAAANVEVNRPAVEAGLLVLDAGGDFADGVIAYEG
NWLGGETFVSFDKKAVALLTAQGQSTRLL"
misc_feature complement(37055..37408)
/locus_tag="CAP2UW1_4522"
/note="PIN (PilT N terminus) domain: Superfamily; Region:
PIN_SF; cl14812"
/db_xref="CDD:246722"
misc_feature complement(order(37073..37075,37130..37132,37397..37399))
/locus_tag="CAP2UW1_4522"
/note="putative active site [active]"
/db_xref="CDD:189022"
gene complement(37411..37662)
/locus_tag="CAP2UW1_4523"
/db_xref="GeneID:8401865"
CDS complement(37411..37662)
/locus_tag="CAP2UW1_4523"
/note="TIGRFAM: transcriptional regulator, AbrB family;
PFAM: SpoVT/AbrB domain protein;
KEGG: xcb:XC_2600 hypothetical protein"
/codon_start=1
/transl_table=11
/product="transcriptional regulator, AbrB family"
/protein_id="YP_003162928.1"
/db_xref="GI:257074531"
/db_xref="InterPro:IPR006339"
/db_xref="InterPro:IPR007159"
/db_xref="GeneID:8401865"
/translation="MTTLTVTARGQVTFRKDVLQHLGIRPGDKIELDLLPDGRGVLKA
ARPAGTISSFVGLLAGRTQKVATIEEINEAAALGWAGKK"
misc_feature complement(37441..37662)
/locus_tag="CAP2UW1_4523"
/note="Regulators of stationary/sporulation gene
expression [Transcription]; Region: AbrB; COG2002"
/db_xref="CDD:224913"
misc_feature complement(37519..37650)
/locus_tag="CAP2UW1_4523"
/note="SpoVT / AbrB like domain; Region: SpoVT_AbrB;
smart00966"
/db_xref="CDD:198034"
CONTIG join(CP001718.1:1..37695)
//
