LOCUS NC_014022 94251 bp DNA circular CON 08-JUN-2013
DEFINITION Yersinia pestis Z176003 plasmid pMT1, complete sequence.
ACCESSION NC_014022
VERSION NC_014022.1 GI:294501992
DBLINK Project: 47317
BioProject: PRJNA47317
KEYWORDS .
SOURCE Yersinia pestis Z176003
ORGANISM Yersinia pestis Z176003
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Yersinia.
REFERENCE 1 (bases 1 to 94251)
AUTHORS Shen,X., Wang,Q., Xia,L., Zhu,X., Zhang,Z., Liang,Y., Cai,H.,
Zhang,E., Wei,J., Chen,C., Song,Z., Zhang,H., Yu,D. and Hai,R.
TITLE Complete genome sequences of Yersinia pestis from natural foci in
China
JOURNAL J. Bacteriol. 192 (13), 3551-3552 (2010)
PUBMED 20453098
REFERENCE 2 (bases 1 to 94251)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2010) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 94251)
AUTHORS Hai,R., Yu,D., Xia,L., Zhu,X., Liang,Y., Shen,X., Zhang,E. and
Zhang,H.
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2009) State Key Laboratory for Infectious Disease
Prevention and Control, Institute for Communicable Disease Control
and Prevention, Chinese Center for Disease Control and Prevention,
No.5 Liuzi Changping, Beijing, Beijing 102206, China
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP001595.
DNA and bacteria are available from Institute for Communicable
Disease Control and Prevention, Chinese Center for Disease Control
and Prevention.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..94251
/organism="Yersinia pestis Z176003"
/mol_type="genomic DNA"
/strain="Z176003"
/db_xref="taxon:637386"
/plasmid="pMT1"
gene 87..1109
/locus_tag="YPZ3_pMT0001"
/db_xref="GeneID:8989853"
CDS 87..1109
/locus_tag="YPZ3_pMT0001"
/codon_start=1
/transl_table=11
/product="putative transposase"
/protein_id="YP_003565730.1"
/db_xref="GI:294501993"
/db_xref="GeneID:8989853"
/translation="MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEP
PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMR
YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFS
PRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVA
NQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDS
FCRGVA"
misc_feature 87..959
/locus_tag="YPZ3_pMT0001"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:226950"
misc_feature 93..200
/locus_tag="YPZ3_pMT0001"
/note="Helix-turn-helix domain of Hin and related
proteins, a family of DNA-binding domains unique to
bacteria and represented by the Hin protein of Salmonella.
The basic HTH domain is a simple fold comprised of three
core helices that form a right-handed...; Region:
HTH_Hin_like; cd00569"
/db_xref="CDD:119388"
misc_feature order(180..185,189..197)
/locus_tag="YPZ3_pMT0001"
/note="DNA-binding interface [nucleotide binding]; DNA
binding site"
/db_xref="CDD:119388"
misc_feature 444..812
/locus_tag="YPZ3_pMT0001"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
gene 1109..1888
/locus_tag="YPZ3_pMT0002"
/db_xref="GeneID:8989778"
CDS 1109..1888
/locus_tag="YPZ3_pMT0002"
/codon_start=1
/transl_table=11
/product="transposase/IS protein"
/protein_id="YP_003565731.1"
/db_xref="GI:294501994"
/db_xref="GeneID:8989778"
/translation="MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLE
HLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERN
ENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQR
GVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDA
ALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE"
misc_feature 1109..1885
/locus_tag="YPZ3_pMT0002"
/note="transposase/IS protein; Provisional; Region:
PRK09183"
/db_xref="CDD:181681"
misc_feature 1367..>1669
/locus_tag="YPZ3_pMT0002"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 1433..1456
/locus_tag="YPZ3_pMT0002"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(1436..1459,1619..1621)
/locus_tag="YPZ3_pMT0002"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 1607..1624
/locus_tag="YPZ3_pMT0002"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene complement(2022..2630)
/locus_tag="YPZ3_pMT0003"
/db_xref="GeneID:8989779"
CDS complement(2022..2630)
/locus_tag="YPZ3_pMT0003"
/codon_start=1
/transl_table=11
/product="tail fiber assembly protein G"
/protein_id="YP_003565732.1"
/db_xref="GI:294501995"
/db_xref="GeneID:8989779"
/translation="MTFKMTDKARTLKVYNLLEGTNEYIGVGDAYIPPFTGLPANCTE
IEPPTTTEGFAAVFDFTKQEWSLEEDHRGKTLYSTETGEPVFIAELGPLPENVTYISP
NGEYQKWDGSAWVKDEEAEKTALVGEAEQNKSVLMKNVSQQISLLQDAIDLDMATDEE
KETLVALKKYRVLLNRVDTSLAPDIDWPILGNEEEDSANLIK"
misc_feature complement(2067..2417)
/locus_tag="YPZ3_pMT0003"
/note="Caudovirales tail fibre assembly protein; Region:
Caudo_TAP; pfam02413"
/db_xref="CDD:217022"
gene complement(2932..5820)
/locus_tag="YPZ3_pMT0004"
/db_xref="GeneID:8989780"
CDS complement(2932..5820)
/locus_tag="YPZ3_pMT0004"
/codon_start=1
/transl_table=11
/product="putative phage tail protein"
/protein_id="YP_003565733.1"
/db_xref="GI:294501996"
/db_xref="GeneID:8989780"
/translation="MWYREGTITFTQGSDALSGTGTYWNVTANGVLPGMIVIGPDNKL
YEIKRVISDTSLILAEPYTGETQKEVPCRIITTYEGDLTQFSARFTALMTRMSADSKT
MRSWLTAVDEVTLEREDGTEVTVKSLTQIVDEHNANQKWYTDNADAINAAGEKAREAA
ERALAAAQSSSEARAKADEAAQSSASASEYKTAAELSAAASKASEHGAAESAASSKAS
ASAAKTSEDNSAASETNAAESKAAAALSASSSANSASEALQYAESAKTSKEAAAASEA
AAANSENEARTSKDTAVAAAAEASANATSADASRHDVDTNKAEVSRMKDEVFAARDST
IQYSEEAKTAADTAAREAATKTSDQLLSAVKSEAEKANSASASAQGFADDAKRFRDEA
QEIAEGSKVNDATTSQQGVVQLSSATDSESETLASTPKAVKTVMDAVALKAPIDSPAL
SGAPTAPTPAITAAGREIATAAFVASKVAQLVGSAPEALDTLNELAAALGNDPNFATT
ITNMLARKQPLDGTLTALSGRSPQGVIDYLGLLNTVNLAAGSIQKSQNGADIPDKRLF
VKNIGAVSSARISFVKESGWYKLATVTMPQGASTALITLIGGAGYNAGLYDQAAISEI
VLRSGNWNPVGITATLWQRSPAGAQGVAWINTSGDVYDIYVNVGQYSIDVIALSDCTN
NASIVLFGTPEYVATKPASSTNGANYILYSSVLPPPESYPVGAPIPWPNDVAPSGFAI
MQGQTFDKSVYPKLAAAYPSGVLPDMRGWMIKGKPTSRAVLSLEQDGIKSHAHNAAAS
STDLGTKPTTTFDYGTKTSSGFDYGTKSSNSTGAHAHSLSGSTSSSGAHAHTVTAHTQ
YPRSTDSRNQNAVGKQYNTQQTTANAFNVWTSSAGDHAHSISGTAVSAGAHAHTVGIG
AHAHSLSIGSHSHSVAIGAHSHTITIAACGNAENTVKNIAYNYIVRLA"
misc_feature complement(4477..4608)
/locus_tag="YPZ3_pMT0004"
/note="Phage tail fibre repeat; Region: Phage_fiber_2;
pfam03406"
/db_xref="CDD:146180"
misc_feature complement(<3676..>3891)
/locus_tag="YPZ3_pMT0004"
/note="Carbohydrate Binding Module 6 (CBM6) and CBM35_like
superfamily; Region: CBM6-CBM35-CBM36_like; cl14880"
/db_xref="CDD:246750"
misc_feature complement(3508..3651)
/locus_tag="YPZ3_pMT0004"
/note="Phage Tail Collar Domain; Region: Collar;
pfam07484"
/db_xref="CDD:203644"
gene complement(5901..6533)
/locus_tag="YPZ3_pMT0005"
/db_xref="GeneID:8989781"
CDS complement(5901..6533)
/locus_tag="YPZ3_pMT0005"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565734.1"
/db_xref="GI:294501997"
/db_xref="GeneID:8989781"
/translation="MEKDIMDETPVISAVRNAVRSLSGGISCEIQFDGLVMDDGVTPL
FLPYTLSESDTSPLAKKILEALESESSGGIAPYPEQGEYIERLKVEKLAVINDWRLRQ
ECRTVYFEWNGHRWDANDISKERLDISLKAAESGLPDNFFWTDADNNDVPVTQEQLKE
LGMRMTQTLFDRKFGAHERQRVMKKDILEMCDPELIKNYQVGWGDGSARR"
misc_feature complement(5937..6284)
/locus_tag="YPZ3_pMT0005"
/note="Domain of unknown function (DUF4376); Region:
DUF4376; pfam14301"
/db_xref="CDD:222663"
gene complement(6536..11167)
/locus_tag="YPZ3_pMT0006"
/db_xref="GeneID:8989782"
CDS complement(6536..11167)
/locus_tag="YPZ3_pMT0006"
/codon_start=1
/transl_table=11
/product="host specificity protein J"
/protein_id="YP_003565735.1"
/db_xref="GI:294501998"
/db_xref="GeneID:8989782"
/translation="MEQFKKKRLPLLIAGAGGKKSSGSSRTPVEADDTVNSRAMASIL
DLLGEGVIGGLVDGAKSIFVDDLPILNEDGSSNFSGITWDFRDGSQDQTPMAGFDFVE
TPKSVNIQLKRMHDVTIAIDNDEADRVRVILKFPSLRSIDKKTGDTNGTTVKYKFQIA
NGDNAFKDAIAEGESASEIALTAKKTGVYYRSYELKLPKPGRAYKVRVLRLTDDSNTQ
YIFNDTWVDSIGEIVDTPMNYPNSALVGLKVNSEQFGSSMPSRSYLVRGLKIRVPSNY
DEHTNTYIGVWDGTFKLLSSSNPAWILFDLLTNARYGLGQYVSESMIDLGQIYQIGRY
CDEEIDNGFGGKEKRFAINTQITSRQDAYRLIQDIAGAFRGMVFWAGGMVNVMQDSPS
DPVMMFTNANVKDGMFSYKGSARKDRPSVALVTYNNKEDGYKQNIEYVEDQEAMRRYG
ERKTEVVAFGCTSRGQAHRVGLWLLYTARMESDVISFTAGLDASFLMPGETVLIQNKY
RAGKRNSGRIVAFTKNSITLDAPVTLNKAGSYIRILNQEGEIVERDILETGEDITKVT
FSKALNSGDMPVMNGVWTITEPDLEPMRVRVINVAQGEAQGTFNVTVVQNNASKYEAI
DNGATLIPENNTVLDPTYSKPTNLQVTEGTYISSPGNLSIKLVATWEGKSAEYWISWR
RSDENNVSNWQSARVTEEQFEILNIAENGQYDIQLYAVSFSGKKTDIISTVYQVKGTM
TPPGSPTSLTAVGDYRNVILNWVNPDSIDLDHINVYASQTNDLETAKLVAEAASTTFT
HAGLGDSETWYYWVRAVNKRGMLSPPNSNLGTEAMTRDVLSFLTGKITSSELGQELLE
EIDAKASQDAVDAINKQMEESLKELDQSVADLDSKLEDTSGRLEQVQNDLKNEVSGTL
DKVNDALQQVEDSNAALVELQETVSEQGKAIAGAVEAAHAALDNASALIAEEREARVE
GDKANAKQIEAMKSSVDDSVAAVEEMKKTVAEVERASAEASTNIEALAKTNIDLALRQ
DEDQHKQMVNNAKIATTQKTFADDMSAMASKVEEIRAEIGEDIRASILEETTARVEAD
KTIATHISKLEAQLNDDISAAIVSEQEARATADETLSRQITTLQAKVEGDISAALTEE
QIARATADEALSKQITQLKAQNGEDIKAAVAEETQARTDADGALASQISSLKAQTAED
IKAAVDTETKARTDADSALAGQITNLQAQTGKDINAAITSEATARANADGALGKRIDT
VKAEVDGNSALIQQQAKAIADTDKKVSAAWTLKMETSTSGGQKYVAGIALGIDSTGLS
QFLVQADRFGLVNSVNGKITTPFVIENSVAYMNGAYIKDGTITNAKIGNVIQSNDYAA
GSRGWIIPKDGSPEFNNGTFRGNIAANSGTLNNVTIAQNCQILGKLHANQIDGDIVKA
YMVNGSSIYIAPQTFARIIYVVNGYYYNKPSEDINTYSWSRITEYTVNGVKQQIYGMR
EGSKNQSGLFGYYNLPAGQSATVDVYTWHRQRKYDHRVNEPYLILVFKA"
misc_feature complement(7793..11092)
/locus_tag="YPZ3_pMT0006"
/note="Phage-related protein, tail component [Function
unknown]; Region: COG4733"
/db_xref="CDD:227076"
misc_feature complement(9614..10099)
/locus_tag="YPZ3_pMT0006"
/note="Putative phage tail protein; Region: Phage-tail_3;
pfam13550"
/db_xref="CDD:205728"
misc_feature complement(8993..9241)
/locus_tag="YPZ3_pMT0006"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:238020"
misc_feature complement(order(8996..8998,9041..9043))
/locus_tag="YPZ3_pMT0006"
/note="Interdomain contacts; other site"
/db_xref="CDD:238020"
misc_feature complement(7112..7348)
/locus_tag="YPZ3_pMT0006"
/note="Domain of unknown function (DUF1983); Region:
DUF1983; pfam09327"
/db_xref="CDD:220181"
misc_feature complement(6629..7015)
/locus_tag="YPZ3_pMT0006"
/note="Fibronectin type III protein; Region: DUF3672;
pfam12421"
/db_xref="CDD:221570"
gene complement(11189..11776)
/locus_tag="YPZ3_pMT0007"
/db_xref="GeneID:8989783"
CDS complement(11189..11776)
/locus_tag="YPZ3_pMT0007"
/codon_start=1
/transl_table=11
/product="putative phage tail protein"
/protein_id="YP_003565736.1"
/db_xref="GI:294501999"
/db_xref="GeneID:8989783"
/translation="MSELVHVQLGGPMARHFGRHWHLKVRNTKQALDLVEANRPGLKA
WMKRNMKTYDKYHIQITNKQGHKWSVDESEFQMMGQSDNIAKIRITPVPRGSGGKAFG
WFQTVVGALVMVASFWFPALAPLGLSLMMGGISQLISPQATNDSVRQADNSNSFYFDG
PQNTTNQGNPVQLIYGEEILVGSQVVSSSITIDQL"
misc_feature complement(11192..11776)
/locus_tag="YPZ3_pMT0007"
/note="Phage-related protein, tail component [Function
unknown]; Region: COG4723"
/db_xref="CDD:227067"
gene complement(11764..12561)
/locus_tag="YPZ3_pMT0008"
/db_xref="GeneID:8989784"
CDS complement(11764..12561)
/locus_tag="YPZ3_pMT0008"
/codon_start=1
/transl_table=11
/product="putative phage tail protein"
/protein_id="YP_003565737.1"
/db_xref="GI:294502000"
/db_xref="GeneID:8989784"
/translation="MGNRAFPELGSDIMQEIYLTAIKRYPNEACGFLVRTTGEKYRFM
EARNVSENPENTFVMHADDIIAAEDAGDVVAIWHSHTDESADASDADRAGCEATEVPW
LILAVRKNVEGDAPFHFSEMNVITPDGFEMPYLGRPYVFGVFDCWMLCRDYLKREFNV
ELNPNPHLHIPSWYTGDTDILDQNYRNEGLVRLAPGTEPQRGDVFFIQYGKMPDHCAV
YIGDGMILHHQIDRLSCRAYYGGMYQKHTTHHLRHRDLLKGDETCLS"
misc_feature complement(12172..12528)
/locus_tag="YPZ3_pMT0008"
/note="Mpr1p, Pad1p N-terminal (MPN) domains with
catalytic isopeptidase activity (metal-binding) found in
proteins also containing NlpC/P60 domains; Region:
MPN_NLPC_P60; cd08073"
/db_xref="CDD:163704"
misc_feature complement(order(12289..12291,12298..12300,12322..12324,
12328..12330,12478..12480))
/locus_tag="YPZ3_pMT0008"
/note="MPN+ (JAMM) motif; other site"
/db_xref="CDD:163704"
misc_feature complement(order(12289..12291,12322..12324,12328..12330))
/locus_tag="YPZ3_pMT0008"
/note="Zinc-binding site [ion binding]; other site"
/db_xref="CDD:163704"
misc_feature complement(11827..>12162)
/locus_tag="YPZ3_pMT0008"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:223862"
misc_feature complement(11827..12156)
/locus_tag="YPZ3_pMT0008"
/note="NlpC/P60 family; Region: NLPC_P60; pfam00877"
/db_xref="CDD:189752"
gene complement(12554..13252)
/locus_tag="YPZ3_pMT0009"
/db_xref="GeneID:8989785"
CDS complement(12554..13252)
/locus_tag="YPZ3_pMT0009"
/codon_start=1
/transl_table=11
/product="minor tail fiber protein L"
/protein_id="YP_003565738.1"
/db_xref="GI:294502001"
/db_xref="GeneID:8989785"
/translation="MGIKADIQSLSPSALIELFELDMSNTTSGGKLFFHAGTNELMEP
VVWQGVSYEPWPIKASGFDKTGQGTLPRPKIQVSNFAGTVSAEVQANDYLVGCRIIRK
MTLARFLDAANFKDGNPTADPNQHFPDEMWFVEQKTLETHEVVEFELSSVFDLMGVQL
PYRQIIKNTCPWKYRGPECGYTGPYFDKNNQQTTMSGADYCTKRYDSCNARRNYFANG
VIHFGGFIGATRYG"
misc_feature complement(12560..13237)
/locus_tag="YPZ3_pMT0009"
/note="lambda-like phage minor tail protein L; Region:
phage_tail_L; TIGR01600"
/db_xref="CDD:130661"
gene complement(13342..13677)
/locus_tag="YPZ3_pMT0010"
/db_xref="GeneID:8989786"
CDS complement(13342..13677)
/locus_tag="YPZ3_pMT0010"
/codon_start=1
/transl_table=11
/product="minor tail fiber protein M"
/protein_id="YP_003565739.1"
/db_xref="GI:294502002"
/db_xref="GeneID:8989786"
/translation="MERLTFNWYPDYESEKTVKPNVTVLNFGDDYEQRQAKGLNRIKE
EWSLTFTRSYDVINAVDDFLTARAAVESFYWTNPRGKKMVVVCDSHTVKRYQGYLVLT
ATFRQIYEG"
misc_feature complement(13348..13677)
/locus_tag="YPZ3_pMT0010"
/note="Phage-related protein [Function unknown]; Region:
COG4718"
/db_xref="CDD:227062"
gene complement(13719..18296)
/locus_tag="YPZ3_pMT0011"
/db_xref="GeneID:8989787"
CDS complement(13719..18296)
/locus_tag="YPZ3_pMT0011"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565740.1"
/db_xref="GI:294502003"
/db_xref="GeneID:8989787"
/translation="MSQNVEFILSLEDKQFTASIDRAGKLLTRFGEQATKPAQKINNL
ERSLGSVSRIIGVLESKLDVTAEKLQDVAAGFELVSDVSRKTRGSITSLNSGLKTLIE
RVDTTTSSVNKLTTSLRKVQSELNEFSDWATFAGKSASRFGTEVKEASASVSGMNTRL
NTTTKRLSNWGVTTSQAAEGLKKVRDQMDAVIGRQQLISKPVRVRTSSYGDGGGNGGG
GRHSGSYGHGGRSAESGVFSGLRGNIFLLGEIGDAARTVTDILFGWQKPIIEAASEME
RMRVMLRGLNKDKANPGKAAAEDMQYIVDMAQNAPFAMQALTDSFVKFRSAGLDPTDG
SLKALVDSVARFGGDSELLKRAAVAVQQMSGKGVVSMEELRQQLGEAVPNAMKAMADA
AGITMGELTKAVSTGTVEAKQALSLMFVGLRAENENAAKDMMQTYTGALAQLQTSFTL
FADRVGQAGYLDSLTKGMKELASIMNSAEGISFANSLGSGLSTAIDGLRELAQWLAKN
QELVISLGKVVAAMVAFKLMRAGIAGVIGTAGQMVNTFTKMSTVLQAPFNLGATAVTR
FNRAARMGLAPIPSLIFAIRGAITGLQGAFAGLTAFIAANPIGAAFTVATVAVAGLIT
YMTMLRSETSKVVDEIRKIPEAMTAAKRAQMAARAAELEKQIQRDQQALKTGESVNYY
STAAGPVAVKESKEVVEARLKKNQEEYERTTGTMALGDGAVAKRLAKEAAESQIEKIR
ADNQVFSATFVKARQEALDKIQKINDDKSLSDDEKNKLLAPLREKVNKSYLEPAQKLV
YDLSSRKNATEKQIAHFSDMLEKAKKEGNTEQVQKLQGSIRGYQEHLEAVAQELTQAE
FERDSAAKTGKGVMSNQGTVLGLGTTDKAAQKALAQYMRNQMDSATYQRTLPDGTAML
DFEGKPIIGPKQLKTQLNLQKASSASSLEKMSDEERAAAIAALTKAREQDAAAAEKAG
QRTANASQRAARKEENAQRKLAAGYQKALDKADQLMGQMGESSKATVSFDQSLRDTTK
SLTELANAVPNEFITQEMIDKAKSRLADLANASDDYREMFNRRNVEQMISTWAPESDS
IISAGYKPSREEKVADFNDTYNRNLKALMDLRDQASDPKIVALYTKQINQLVAAGNTA
LIKETGTATQKLALEYENLAEQLENSWSNLFSNMTDTLTDFVMKGKLDFSSLAESILR
DITNMVVKTQITLPLMNMLGMGTTAAGSSQSGNLLSGVASAVANQGVRMNAVNGDKSV
GEATKETSSSVSGLGQTTQQTTSAIGSATNAIGNWVNGLFTSTEAKDAETKAVKTSIF
SMQNLSSVTGALSAAFAMLGANMSGSGNKWLSFGATIASGLVSAWAGGGFDNIGSGSS
GSNSGFNNLTGSASDGTGGIPAIPKFAKGGIFGKDGVVPLRAYQKGGIADSPQLALFG
EGDMNEAYVPLPDGRSIPVTLNAEGVKGGGVFSPVSIEINVNSDGSVSENSNSEGAWS
QAAQRMKAIALETIAQEKRPGGSLNPNSQRN"
misc_feature complement(<16233..17549)
/locus_tag="YPZ3_pMT0011"
/note="Mu-like prophage protein [General function
prediction only]; Region: COG3941"
/db_xref="CDD:226450"
misc_feature complement(17055..17282)
/locus_tag="YPZ3_pMT0011"
/note="tape measure domain; Region: tape_meas_nterm;
TIGR02675"
/db_xref="CDD:131723"
misc_feature complement(14634..14837)
/locus_tag="YPZ3_pMT0011"
/note="Lambda phage tail tape-measure protein
(Tape_meas_lam_C); Region: Tape_meas_lam_C; pfam09718"
/db_xref="CDD:192343"
gene complement(18654..18971)
/locus_tag="YPZ3_pMT0012"
/db_xref="GeneID:8989788"
CDS complement(18654..18971)
/locus_tag="YPZ3_pMT0012"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565741.1"
/db_xref="GI:294502004"
/db_xref="GeneID:8989788"
/translation="MTKLLDLDSILPPKKSIKFGGQEYPIVEMTVGLFVSIKQMEGKD
LQNMSPVEQVTAYADLVRKVIPSVPDAVLEKLTVPQLQQIFTFAMEVIDEENEKAAGE
GAK"
gene complement(19031..19777)
/locus_tag="YPZ3_pMT0013"
/db_xref="GeneID:8989789"
CDS complement(19031..19777)
/locus_tag="YPZ3_pMT0013"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565742.1"
/db_xref="GI:294502005"
/db_xref="GeneID:8989789"
/translation="MSNTHVKNIKLGACKVSFGGVDLGYTKGGVQVEVATETLKVTVD
QLGQTTISELVQGRNITITAPLAESVLQNMVDLMPGSTLSEEENSVTITSAQGVNLID
VAKELVLTPQDTTDYVLTIPKAATAGNFTMTYQSDDVRVFSVQFTAYPDDDGVLGKMS
GPKPVKTVSISPESPEVKAGETVQLTAQITPADAGDKTGVWESDNQEKATVDQTGLVR
GVAEGSANISFTSNSGGKKATKAVTVNSAQ"
misc_feature complement(19034..19777)
/locus_tag="YPZ3_pMT0013"
/note="Bacterial surface proteins containing Ig-like
domains [Cell motility and secretion]; Region: COG5492"
/db_xref="CDD:227779"
misc_feature complement(19067..19288)
/locus_tag="YPZ3_pMT0013"
/note="Bacterial Ig-like domain (group 2); Region: Big_2;
pfam02368"
/db_xref="CDD:217000"
gene complement(19852..20235)
/locus_tag="YPZ3_pMT0014"
/db_xref="GeneID:8989790"
CDS complement(19852..20235)
/locus_tag="YPZ3_pMT0014"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565743.1"
/db_xref="GI:294502006"
/db_xref="GeneID:8989790"
/translation="MFIEAFASLMQKAKIGTVGTDIFCHYMPANVKSGVLLVTPNTGI
TIDHELKGFYHDSFTVIVRNATITKTVAKANKIMDMFPVEETVSDGVYFRLVRPMSMP
ITYPKNEGSLIEAGIPIEFAGYLLN"
gene complement(20237..20710)
/locus_tag="YPZ3_pMT0015"
/db_xref="GeneID:8989791"
CDS complement(20237..20710)
/locus_tag="YPZ3_pMT0015"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565744.1"
/db_xref="GI:294502007"
/db_xref="GeneID:8989791"
/translation="MGLKYDAHHFKRAGDRLNNSQKAFKRYLIRDMEKLARLVERLAR
AMAPLETGSLESAIFARVVKEGYTGLRIELSVSGAKPREGHPGVEVGDYAEYMELGKY
RLGYLSRMKSVTNPPVAGVKPRVGPLFLERAVQISEKQFTQTIAEAARKAGFTRG"
gene complement(20701..21045)
/locus_tag="YPZ3_pMT0016"
/db_xref="GeneID:8989792"
CDS complement(20701..21045)
/locus_tag="YPZ3_pMT0016"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565745.1"
/db_xref="GI:294502008"
/db_xref="GeneID:8989792"
/translation="MNISWQAEIAIYRLGSKNVYGEAQLQFVRKTNVGVVKFEQSNEK
SSVRADSSGSRGKANLELFDAVLVIPLEAAVQLDDVLILEGQKLKVSSVHRRWGLRGR
PGHLEVGANIWV"
gene complement(21143..21976)
/locus_tag="YPZ3_pMT0017"
/db_xref="GeneID:8989793"
CDS complement(21143..21976)
/locus_tag="YPZ3_pMT0017"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565746.1"
/db_xref="GI:294502009"
/db_xref="GeneID:8989793"
/translation="MAQIDTYRSGEAVSLSFAFNVLDIESATYTVRDGAGAIIVDNEP
LDITEGQMSIPVVVSAEHNLLSDKERDLRHVIVKAVASGLTHEERKMYVLLNSFELSI
PGQSFATVADAQMQAIDMLNGDTLLADGEGLMRKRLIEATRRVKTLPFSIRKVLRIDF
DRYDRPQNMLNVYDIPWGADGAYRHDLIDWEQMTPEKFDEFPDYFKQALMLAVVNEAC
EIANGNDVAAAREDGILSESIGETTNMYRTGKAANVQVARSTWRLLVSYINNRMIVRR
A"
gene complement(21976..22410)
/locus_tag="YPZ3_pMT0018"
/db_xref="GeneID:8989794"
CDS complement(21976..22410)
/locus_tag="YPZ3_pMT0018"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565747.1"
/db_xref="GI:294502010"
/db_xref="GeneID:8989794"
/translation="MKPAKIRLLEPQFLGYTGILCGIQFVDGISVAELRFIDQQRICA
SMRATTVEGKNVSPSAAYSSRNDLTADDIVETAAPDIVPMKRGTAEVEAKPVQRFTRE
ELESIADCEGIAGLRQIGNQIGVKAKGIVEMIEGILKAQGGE"
gene complement(22454..23116)
/locus_tag="YPZ3_pMT0019"
/db_xref="GeneID:8989795"
CDS complement(22454..23116)
/locus_tag="YPZ3_pMT0019"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565748.1"
/db_xref="GI:294502011"
/db_xref="GeneID:8989795"
/translation="MPEQKMKITEEAFSDFTGHMCRAGFTNSISNEPLSERQQNHLAA
CFRAIPFTQSVTITPTAPSVLVGKTVQLSAGITMSKSADSFTWTSDNDRVATVSGTGL
VTGVTPGKVKITATDKQTQLSASVEVIVKPVSVESVTVTPDSTSVEKGKSVKLRVDVQ
PSNATNKKVTWTSKNSDKATVDQNGNVAGVAVGTATIEVVSQDGSHKATATVEVTAAP
AA"
misc_feature complement(<22496..23116)
/locus_tag="YPZ3_pMT0019"
/note="Bacterial surface proteins containing Ig-like
domains [Cell motility and secretion]; Region: COG5492"
/db_xref="CDD:227779"
misc_feature complement(22502..22714)
/locus_tag="YPZ3_pMT0019"
/note="Bacterial Ig-like domain (group 2); Region: Big_2;
pfam02368"
/db_xref="CDD:217000"
gene complement(23191..24066)
/locus_tag="YPZ3_pMT0020"
/db_xref="GeneID:8989796"
CDS complement(23191..24066)
/locus_tag="YPZ3_pMT0020"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565749.1"
/db_xref="GI:294502012"
/db_xref="GeneID:8989796"
/translation="MPLLRDEAEKLSNNELEQGVIETIIDRDDLFAVLPFMKINSKAY
LYNREATLSEATFIDVNDTITEGAATFTEHVAKLRILAGDVDVDKFLATTMSDTNNQL
AIQVRQKVKGLARAFRRNLILGDSTTNTKAFDGIPKLMHDDQKIDIEGASMTFSMFDE
LVDAVKDLGADCIMMRSEHLRAYRALLRTVSLGPSEIMMENFGRPMLCHNGVPFIVND
FIPTDAGKASIYCLHLSEENGVTGLYGGENAGIVVENIGTVQNKDATRTRVKWYCSLA
NKHDKAIAALTNVKI"
gene complement(24093..24926)
/locus_tag="YPZ3_pMT0021"
/db_xref="GeneID:8989797"
CDS complement(24093..24926)
/locus_tag="YPZ3_pMT0021"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565750.1"
/db_xref="GI:294502013"
/db_xref="GeneID:8989797"
/translation="MNLWQMLMARRGLMDAAEAHERGGAGGGAPAGDNEQGNQDPGKQ
GEQKEQPKGDDDEYAGMTQEELLAELRKSKKAGADLLKENMKRKEKERTLADQLAQYG
DIDPARARQLLEAEQAAETARREAEQAELERRGEFDAVKKQMIEAHQAQLVEMTVGAS
FSGSAFLRDKVLMTPAKARVIYGSHFEVGEDGSVVGFDKPAGQKERAVLVDGEGKPLP
FESAIERILRADPEADALLRSEAKQGAGSNSKPTHKVNQPKSKSTMDKLTSGLGKIGL
K"
gene complement(24949..26523)
/locus_tag="YPZ3_pMT0022"
/db_xref="GeneID:8989798"
CDS complement(24949..26523)
/locus_tag="YPZ3_pMT0022"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565751.1"
/db_xref="GI:294502014"
/db_xref="GeneID:8989798"
/translation="MELTDKQIKDLVARRHPEYEKKKEHWDFLASTYAGGRAWFNDNI
FRYFKEGDQEFKERLERAYRFNHTREVVNLINKYLFKEVIHRNTDEAPEQIRNFWKRA
TRQNASIDAFMAAIDLQSSIYGRIWVVVDSTMNVDVESVADEKKNDARAYAYWISPQQ
LLDVAWDEDGNMLWALIVEIARDDEDPFTSTGQEYQRYRLWTQNEWYLFREEVKKGSG
NSGRRQAKVVLEDSGEHNLGVVPVFPVDCIGESESPYFSPSLIDDIAYLDRAVANYLS
NLDAIIQDQTFSQLAIPVQSLLPGDENHTKVLEMGTKRVFTFDSESGNQPFYLSPDPK
QAQMIITTIKTVINEIYHSVGVAGERTKQDNAQGIDNSSGAAKMYDFQRVNSLLVTKA
ERLERAERQMMQLAAKWMGVELDEDHSLIAYPESFDIRGLTDEFAVAEKLSLLQAPDS
VRRHQMEMLIEKVFPNISEAMQKEFQKDLLKFPPKNDLNTLENKSVLTYDRDISQESG
QDQPRGNGDSSTQETE"
misc_feature complement(25255..26508)
/locus_tag="YPZ3_pMT0022"
/note="Phage portal protein, SPP1 Gp6-like; Region:
Phage_prot_Gp6; pfam05133"
/db_xref="CDD:218455"
gene complement(26557..27813)
/locus_tag="YPZ3_pMT0023"
/db_xref="GeneID:8989799"
CDS complement(26557..27813)
/locus_tag="YPZ3_pMT0023"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565752.1"
/db_xref="GI:294502015"
/db_xref="GeneID:8989799"
/translation="MAIPSSLSLVQLHSGQMQVFQSPHRFKVVCAGRRWGKSRLSIST
IIRAAAKEKKQRVWYVAPTYQMARQILWDDLQEVLPRKWVRKKNDTTMTIVLKNGSEI
ALKGADKPDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSSTRGGALIIGTPKGFSE
FHKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDMDPKSFAQEYLASFE
NMSGRVYYPFDRNVHVKPLQFNPKLPIWVGQDFNIDPMSSVILQPQPNGELWAVDEVV
LFSSNTAEVCDELERRFWRWKSQVTIFPDPAGAYRQHARGESDVDIFKEKGFLRVDYP
KKHPPIADRVNAVNRMLMSASGETRLYIDPKCKHLIDSLEKVIYKPGSRDMDKTGGIE
HSADALGYPVHRRYPVKNRVILGGSR"
misc_feature complement(<27148..27789)
/locus_tag="YPZ3_pMT0023"
/note="large terminase protein; Provisional; Region: 17;
PHA02533"
/db_xref="CDD:222858"
misc_feature complement(26605..27723)
/locus_tag="YPZ3_pMT0023"
/note="Terminase-like family; Region: Terminase_6;
pfam03237"
/db_xref="CDD:217445"
gene complement(27816..28457)
/locus_tag="YPZ3_pMT0024"
/db_xref="GeneID:8989800"
CDS complement(27816..28457)
/locus_tag="YPZ3_pMT0024"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565753.1"
/db_xref="GI:294502016"
/db_xref="GeneID:8989800"
/translation="MTVEKDESKTRLTPAEWAEAEAKWTSGEYTLSKLEEEYGIRRET
LSRHFKKRGLEKGADSVGKMVRESLKSDAELRAKARAEKIEERRTRYDDWAFALGRMV
MHEVATAKKDGKPLATIEDDLKSLQRASGTLAKCFEVSSKALGMDRAENEDDEIPNLV
FGELTPSQVAQLRKEDDEPDLIDDDLLESLEEEALSEAEGDSDASGDESDGSV"
gene complement(28929..29828)
/locus_tag="YPZ3_pMT0025"
/db_xref="GeneID:8989801"
CDS complement(28929..29828)
/locus_tag="YPZ3_pMT0025"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565754.1"
/db_xref="GI:294502017"
/db_xref="GeneID:8989801"
/translation="MIDMTDIIIKRYRPEEFPRHLDFLERMTVTKGTVEDWHALKSLH
YKTDGKPFAPTYYRCELDDRLVGVVVMAYPKLLLAPRHRMFPKLKPTTNTTVANQYWG
RYVNNNFAVISRSVVDTQYRGVGVSYRMINLVSRMHDRPIIEIQSSMSKYNPFAMKAG
FQFIRPERPKSYESALRVFQRHFRSDPGDNEAIVKELFAMSESRRRRALRDLVADYHK
NSSLAKAGRNRGTTIQDIADSLVDEASIVKLLKDIHNLSFTSPLYGVYRNPDFGRQLP
DTLPLLAFDKQPLNKPLEIALPA"
misc_feature complement(28950..>29828)
/locus_tag="YPZ3_pMT0025"
/note="ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only]; Region: COG2401"
/db_xref="CDD:225265"
gene complement(30072..30710)
/locus_tag="YPZ3_pMT0026"
/db_xref="GeneID:8989802"
CDS complement(30072..30710)
/locus_tag="YPZ3_pMT0026"
/codon_start=1
/transl_table=11
/product="putative ABC transporter ATP-binding protein"
/protein_id="YP_003565755.1"
/db_xref="GI:294502018"
/db_xref="GeneID:8989802"
/translation="MSKYTINVSFQTRVNKTMRTLEIAESFGLGLDEKEWTLYDNLEL
EVKQGDVVYITGQSGSGKSVVLRELQRQMKDEGLSVASIDDFTFNNEVNVIDQLGKTT
SDALGLLSMAGLNDAYLFVRKPSEMSDGQKYRLKIAKLIESGAKVWAADEFGAVLDRV
TAQVVASNLQRAARKVGATVMVATTHEDLKNALRPDMQITKHYKERVKVEYA"
misc_feature complement(30159..30635)
/locus_tag="YPZ3_pMT0026"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature complement(30144..30626)
/locus_tag="YPZ3_pMT0026"
/note="cytochrome c biogenesis protein CcmA; Provisional;
Region: PRK13540"
/db_xref="CDD:184127"
misc_feature complement(30522..30545)
/locus_tag="YPZ3_pMT0026"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(30255..30260,30450..30452,30519..30527,
30531..30536))
/locus_tag="YPZ3_pMT0026"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature complement(30450..30455)
/locus_tag="YPZ3_pMT0026"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature complement(30303..30332)
/locus_tag="YPZ3_pMT0026"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature complement(30255..30272)
/locus_tag="YPZ3_pMT0026"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature complement(30237..30248)
/locus_tag="YPZ3_pMT0026"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(30159..30170)
/locus_tag="YPZ3_pMT0026"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene complement(30707..31375)
/locus_tag="YPZ3_pMT0027"
/db_xref="GeneID:8989803"
CDS complement(30707..31375)
/locus_tag="YPZ3_pMT0027"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565756.1"
/db_xref="GI:294502019"
/db_xref="GeneID:8989803"
/translation="MTKNFEIVYRNPAELIPYEMNAKKHDEQQIRDLAAAIKKRGFDQ
PITVDKHDVIITGHGRREAALLAGLERVPVIVRDDLSEEEVKAKRLEDNRLASIDYDA
IKLQQELESLVLGDVEVFGFEERELNVLVGSMTEEMETGALVLDLGEETERQKEEHTE
ISREVAAEEVRVIDVLGFKTLPAGSAIVVGDLLAHMEEITGECGVDAFVAYAEKVSSG
ELAA"
misc_feature complement(<30935..31366)
/locus_tag="YPZ3_pMT0027"
/note="Stage 0 sporulation protein J (antagonist of Soj)
containing ParB-like nuclease domain [Transcription];
Region: Spo0J; COG1475"
/db_xref="CDD:224392"
misc_feature complement(31097..31354)
/locus_tag="YPZ3_pMT0027"
/note="ParB-like nuclease domain; Region: ParBc;
pfam02195"
/db_xref="CDD:216926"
gene complement(31375..32055)
/locus_tag="YPZ3_pMT0028"
/db_xref="GeneID:8989804"
CDS complement(31375..32055)
/locus_tag="YPZ3_pMT0028"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565757.1"
/db_xref="GI:294502020"
/db_xref="GeneID:8989804"
/translation="MDVKITILQVEVANLRPNPWNTNSVGAQNFEKLKGSIEKLGFFK
PILARELDGGIFEILGGEHRWRAAMEQGISTVPVISVGKINDLVAKQMSLVDNERYGE
DDQVALQRLIEEIQSEIDYRLSDIAPYDDEMAATLAKASVIDLEALEALSRGDDEPIE
EDKREKTERVGAEHQTMRFKVTFDASDRVADTIKTIIKEQGINTGNEMENAGEALVWL
VDYYKERM"
misc_feature complement(31378..32055)
/locus_tag="YPZ3_pMT0028"
/note="Stage 0 sporulation protein J (antagonist of Soj)
containing ParB-like nuclease domain [Transcription];
Region: Spo0J; COG1475"
/db_xref="CDD:224392"
misc_feature complement(31765..32031)
/locus_tag="YPZ3_pMT0028"
/note="ParB-like nuclease domain; Region: ParBc;
pfam02195"
/db_xref="CDD:216926"
gene 32138..33697
/locus_tag="YPZ3_pMT0029"
/db_xref="GeneID:8989805"
CDS 32138..33697
/locus_tag="YPZ3_pMT0029"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565758.1"
/db_xref="GI:294502021"
/db_xref="GeneID:8989805"
/translation="MTVRIVSNAVNALISGADDNVKRLVQEMLSYEVEAGDWKGTSTM
FNWSKNAFPAGFAKPVAANLLKAGIKCVHVRKEKAPALGKPNPVVNPFPYNPDYAYQD
QTVETLVREGMMIAQIATGGGKSNVACKAAARIGRMTLFLTTRSVLMFQMAENFQKSI
DYRAENGEPWLKGQKVGVIGSGEFQVSRHINVATVQTLASFLEEPPRDASPEKKRYHL
KRRELVKRFLSSVSLLILEEAHESSGSNFYDIARLCINADYRLALTATPFMKDSTEAN
MRLMAVAGRIEIKVTEKYLIDRGILAKPYFLYHKIAYTPDEVRIRAELASKHLNFRVG
MSTAYQKAYQLGIVYNLGRNEAIVREALMYKSHGLNCMTLVRLKRHGQILMEMMKESG
LKVDFIYGESNQTTRQAKLSSLAAGRIDVLIGSTILDVGVDVPSVGAVILGGGGKAEV
EMRQRVGRGLRAKKNQANVCFITDFIDVSNKYLMSHSYERKHIIDTTPGFAEGVLPVG
STFDFTVLNRE"
misc_feature 32429..33610
/locus_tag="YPZ3_pMT0029"
/note="DNA or RNA helicases of superfamily II
[Transcription / DNA replication, recombination, and
repair]; Region: SSL2; COG1061"
/db_xref="CDD:223989"
misc_feature 32477..32938
/locus_tag="YPZ3_pMT0029"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:238005"
misc_feature 32498..32512
/locus_tag="YPZ3_pMT0029"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238005"
misc_feature 32846..32857
/locus_tag="YPZ3_pMT0029"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:238005"
misc_feature 33167..33553
/locus_tag="YPZ3_pMT0029"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:238034"
misc_feature order(33263..33274,33332..33337,33410..33418)
/locus_tag="YPZ3_pMT0029"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:238034"
misc_feature order(33434..33436,33497..33499,33509..33511,33518..33520)
/locus_tag="YPZ3_pMT0029"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:238034"
gene 34038..34460
/locus_tag="YPZ3_pMT0030"
/db_xref="GeneID:8989806"
CDS 34038..34460
/locus_tag="YPZ3_pMT0030"
/codon_start=1
/transl_table=11
/product="putative lipoprotein"
/protein_id="YP_003565759.1"
/db_xref="GI:294502022"
/db_xref="GeneID:8989806"
/translation="MKHVLLPLITIPVLLLSACSSRPVSVANAKPAPQARVFKYQTSA
PTTLVVMRDKGMIGAGCDASIFINGETVAKLETGEKATFHLDAGQWIVGASLEGAGLC
ALNPARQERETITKAGETKVFRVFTSNAGDIDILPTTL"
misc_feature 34086..34430
/locus_tag="YPZ3_pMT0030"
/note="Protein of unknown function (DUF2846); Region:
DUF2846; pfam11008"
/db_xref="CDD:220937"
gene 34465..34992
/locus_tag="YPZ3_pMT0031"
/db_xref="GeneID:8989807"
CDS 34465..34992
/locus_tag="YPZ3_pMT0031"
/codon_start=1
/transl_table=11
/product="putative transcriptional regulator"
/protein_id="YP_003565760.1"
/db_xref="GI:294502023"
/db_xref="GeneID:8989807"
/translation="MTNKTDITYGIPAEVWPRDYSNVEKALMFWRKSLIPVRVTMEDG
QVFCMYVQGLMSSRNKVDLCPAPFDKENRIRLPLERISTIESGVTEGIAHDFTGRTTV
HPDYVDNRPSRRDFFKICRQAHEMQKSIRVYMADGREIEGGSSGVDACQATLNMGDGR
KTVVMFDWVERILPF"
misc_feature 34480..34980
/locus_tag="YPZ3_pMT0031"
/note="Repressor of phase-1 flagellin; Region:
Flag1_repress; pfam03614"
/db_xref="CDD:112432"
gene 35315..35965
/locus_tag="YPZ3_pMT0032"
/db_xref="GeneID:8989808"
CDS 35315..35965
/locus_tag="YPZ3_pMT0032"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565761.1"
/db_xref="GI:294502024"
/db_xref="GeneID:8989808"
/translation="MSNVAISKKSIIDAAVVIANELQVAANNATQTYNNHYQNGTHTK
ADKANMLAATTKLAYFTNNVLNAVNDEKLAGVFYYAIKASKQAPEAFFREAMTNSYSL
EKLVYLVKSIKSGKCVYSVADMSGSRVFALIEMINDELETFTNGAVFDLMNEAKKANE
IKLDAGYTQANQLINLCERLGLVEKIKGMGAAKNGSQQYRFIKNDFYNYLADAFKA"
gene complement(36916..37398)
/locus_tag="YPZ3_pMT0033"
/db_xref="GeneID:8989809"
CDS complement(36916..37398)
/locus_tag="YPZ3_pMT0033"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565762.1"
/db_xref="GI:294502025"
/db_xref="GeneID:8989809"
/translation="MNFIATVNTPSHGHISVTFSDNDKSVLGAWRDNVTIELSGKEKQ
QITNDIICNRRHKRVFEKAYVSTSGFGVFIFPVRSGRFCRSKLIEFATQIALWVKTES
GFDFTEQEAVGEGMRIANNAIKCKNVIYEAGIDSWSISCGDYVKEVYGKNRIHILAGK
"
gene complement(38085..38462)
/locus_tag="YPZ3_pMT0034"
/db_xref="GeneID:8989810"
CDS complement(38085..38462)
/locus_tag="YPZ3_pMT0034"
/codon_start=1
/transl_table=11
/product="transposase for the IS1541 insertion element"
/protein_id="YP_003565763.1"
/db_xref="GI:294502026"
/db_xref="GeneID:8989810"
/translation="MFYREKRRAIGSILRKLCEWKNVNILEAECCVDHIHMLLEIPPK
MSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQ
LEEDKMGEQLSIPYPGSPFTGRK"
misc_feature complement(38157..38459)
/locus_tag="YPZ3_pMT0034"
/note="Transposase IS200 like; Region: Y1_Tnp; pfam01797"
/db_xref="CDD:216708"
gene complement(38752..39321)
/locus_tag="YPZ3_pMT0035"
/db_xref="GeneID:8989811"
CDS complement(38752..39321)
/locus_tag="YPZ3_pMT0035"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565764.1"
/db_xref="GI:294502027"
/db_xref="GeneID:8989811"
/translation="MSKTIRVVGVDPSMSNFGLAIGTLDLETDKLDIHGLTLVETKAG
GNKKTVRVNSDDLRRANEIWRTAKPIIEQAHMVFCELPVGSQSSRAQTSYGICIGVLA
CVDKPLIQVTPNEIKHYVGNKLTTSKEEIIQWATQKQPNAPWLRRKQSGKEVLVNKNE
HLADAVASIYTGMQTDQFRQVRDVLAGIL"
misc_feature complement(38797..39306)
/locus_tag="YPZ3_pMT0035"
/note="Holliday junction resolvases (HJRs) are
endonucleases that specifically resolve Holliday junction
DNA intermediates during homologous recombination. HJR's
occur in archaea, bacteria, and in the mitochondria of
certain fungi, however this CD includes...; Region:
RuvC_resolvase; cl00243"
/db_xref="CDD:206928"
misc_feature complement(order(38830..38832,38839..38841,39082..39084,
39289..39291))
/locus_tag="YPZ3_pMT0035"
/note="active site"
/db_xref="CDD:29627"
misc_feature complement(order(38938..38940,38971..38973,38980..38982,
39055..39057,39073..39075,39202..39204,39277..39279))
/locus_tag="YPZ3_pMT0035"
/note="putative DNA-binding cleft [nucleotide binding];
other site"
/db_xref="CDD:29627"
misc_feature complement(order(39013..39018,39028..39030,39037..39042,
39046..39051,39058..39060,39067..39069,39130..39132,
39139..39141))
/locus_tag="YPZ3_pMT0035"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29627"
gene complement(39334..40080)
/locus_tag="YPZ3_pMT0036"
/db_xref="GeneID:8989812"
CDS complement(39334..40080)
/locus_tag="YPZ3_pMT0036"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565765.1"
/db_xref="GI:294502028"
/db_xref="GeneID:8989812"
/translation="MSFNLSRTQFLQMFAVMQSIKLINHHTAKAAAPALLWKNENIND
DQFSVLTSLLSSTPLMPSLAMLPSGSTAPILVNPFTEGGYLPHSGPGFVAIPETGTLN
IQENALFNAMETHISTAFTNLIRHANARADHVAMPGAAFASVSVDYDRHAPISKRAKL
CFYEEGCEVAVIEVLLPHVFSANEKVAHHLIDIMRHFIGQSMIDADIAAGVLTNDSIH
VVSDIPKPPTREPEKTLEQKLMECPTWATW"
gene complement(40070..41986)
/locus_tag="YPZ3_pMT0037"
/db_xref="GeneID:8989813"
CDS complement(40070..41986)
/locus_tag="YPZ3_pMT0037"
/codon_start=1
/transl_table=11
/product="putative exonuclease subunit 2"
/protein_id="YP_003565766.1"
/db_xref="GI:294502029"
/db_xref="GeneID:8989813"
/translation="MKFLKLQVENFMALASAEVELDQRGLVLIQGVNSGDSSAASNGA
GKSTLMNSLMWCLYGETAHGVKGDDVLSTGHEKNCRVMVTVEDEGKRYAIIRHRKHKE
FKNRLIVRGEDGDMTKGKDTLTQEFVERLIGASKEVFMASIYASQEAMPDLPGMSDKN
LKTIVEEAAGVDRLTRAYAIARERANAAAARMDVTKSKMDACLTLIETAQSEIEAAKA
SSDSWERDRGERLDKARVDLAGAEVTLSEVVMEIRSLPEQIRDTENAIAGERCKLASK
EEHDAKLLKVRGAITEIRSSIRTSEAAQNESMNRARSFKTKAEEVSTKVGAPCVTCGK
PYCEEDLSTVKESFIEQARNEIGQAQASASAVAQHKARLEKALGIESALVAATPDVSE
IIAKIERLTNELSALRHREREVVAVEAMVARARTDVNRIMAEVNPFLAVIKRHEDNLA
ANKSNHAVLKNELKSIQEQALLLEKARQVYSPAGVRSHILTSVTPFLNIRTAEYLNTL
SDGNIVAEWSTMETTKKGEYRDKFNISVTKTGSSKSFQTLSGGEKRKVRIACSLALQD
LVASRASKNIELFIGDEIDDALDTAGLERLMGILEAKARERGTVMIISHKEMKSWFRE
TITVEVKEGRSYVV"
misc_feature complement(<41558..41986)
/locus_tag="YPZ3_pMT0037"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature complement(40085..41983)
/locus_tag="YPZ3_pMT0037"
/note="endonuclease subunit; Provisional; Region: 46;
PHA02562"
/db_xref="CDD:222878"
misc_feature complement(order(41846..41860,41888..41896))
/locus_tag="YPZ3_pMT0037"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(41633..41635,41843..41851,41855..41860))
/locus_tag="YPZ3_pMT0037"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213179"
misc_feature complement(order(41633..41635,41657..41665))
/locus_tag="YPZ3_pMT0037"
/note="Q-loop/lid; other site"
/db_xref="CDD:213179"
misc_feature complement(order(41561..41578,41585..41596))
/locus_tag="YPZ3_pMT0037"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature complement(40082..>40363)
/locus_tag="YPZ3_pMT0037"
/note="ATP-binding cassette transporter nucleotide-binding
domain; Region: ABC_ATPase; cl17201"
/db_xref="CDD:247755"
misc_feature complement(40316..40345)
/locus_tag="YPZ3_pMT0037"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature complement(40238..40255)
/locus_tag="YPZ3_pMT0037"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature complement(40220..40231)
/locus_tag="YPZ3_pMT0037"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature complement(order(40139..40141,40142..40156))
/locus_tag="YPZ3_pMT0037"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene complement(42216..43301)
/locus_tag="YPZ3_pMT0038"
/db_xref="GeneID:8989814"
CDS complement(42216..43301)
/locus_tag="YPZ3_pMT0038"
/codon_start=1
/transl_table=11
/product="putative exonuclease subunit 1"
/protein_id="YP_003565767.1"
/db_xref="GI:294502030"
/db_xref="GeneID:8989814"
/translation="MTLPYGVISDPHYHRWDAFATTNADGLNSRLEIQLDATKEAAKA
MKAAGCKHMLVAGDTFHVRGAISPSVLHFVTETYEWIIKELGLEVVMLAGNHDLETND
SVYSANAAASLRSIGVEIVCGKRPHSIKIGDVTVHLISWRNNHAELISDLKTLRSGLD
GDNHDVVVHTSINKAIPTMPDVGIDAQELKDIGFRLLLSGHYHNHKEVLPGVVSIGAL
THQNWGDVGSLAGFMIVNPDGTFTHHETSAPKFVNLEDDVEDDQIRGNYVRFRAVVEN
DEEGIKLQNVLKTMGAKGVVCNFIRKASMMEGSASTAETSKIDSLGESVAAYCKIVHD
TDGGFDLSKLDMLCQEILTEAESAEAV"
misc_feature complement(42219..43280)
/locus_tag="YPZ3_pMT0038"
/note="DNA repair exonuclease [DNA replication,
recombination, and repair]; Region: SbcD; COG0420"
/db_xref="CDD:223497"
misc_feature complement(42675..>43142)
/locus_tag="YPZ3_pMT0038"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:246597"
misc_feature complement(order(42699..42701,42795..42797,43014..43019,
43128..43130))
/locus_tag="YPZ3_pMT0038"
/note="active site"
/db_xref="CDD:163614"
misc_feature complement(order(42699..42701,42795..42797,43017..43019,
43128..43130))
/locus_tag="YPZ3_pMT0038"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163614"
gene 43717..44739
/locus_tag="YPZ3_pMT0039"
/db_xref="GeneID:8989815"
CDS 43717..44739
/locus_tag="YPZ3_pMT0039"
/codon_start=1
/transl_table=11
/product="putative periplasmic protein"
/protein_id="YP_003565768.1"
/db_xref="GI:294502031"
/db_xref="GeneID:8989815"
/translation="MFRCLALTVSLAFILPGALHAADTRESSSSIRDINVITFQGGWN
LPVWVAQEKGFFRKNGLNVKMDYTPNSGQLVRNLLNGKYNIAVAGIDNVIAYQEGQVK
EPVVNPDMFAFYGVDNGLLSLVANPQIKNISDLKGKQVSVDALTTGYAFVIRNYLEKN
GLTQNDVHYTSVGSTNDRFNALLAGKTDATLLRTPLNLQAKENGFKILASGSELGDYQ
GTTGITTRSWAAQNGDILVSYIRSYIDGLNWIYDPRNQKEAEEILVKKAPGMTAELAG
PALQELLNNGLQRDAAINAEGVKNVLLLRSRLAKPEKNLTDTHKYYDTSYYQKAVGLN
KQETGK"
misc_feature 43717..44727
/locus_tag="YPZ3_pMT0039"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
systems, periplasmic components [Inorganic ion transport
and metabolism]; Region: TauA; COG0715"
/db_xref="CDD:223787"
misc_feature 43849..44508
/locus_tag="YPZ3_pMT0039"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cl17432"
/db_xref="CDD:247986"
misc_feature order(43924..43926,44002..44004,44158..44160)
/locus_tag="YPZ3_pMT0039"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:238078"
misc_feature order(44242..44244,44254..44256,44272..44274)
/locus_tag="YPZ3_pMT0039"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:238078"
gene complement(45099..45743)
/locus_tag="YPZ3_pMT0040"
/db_xref="GeneID:8989816"
CDS complement(45099..45743)
/locus_tag="YPZ3_pMT0040"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565769.1"
/db_xref="GI:294502032"
/db_xref="GeneID:8989816"
/translation="MDLKRTRWVRRLEDGSYTIESNTILNKQKLLCDLCGIASKCPIN
ETRLKLYDAGAHFHLNSCIRYVPLLAFRKPIIGLDAPYFNTLRSGVTWRDRVEPGKLV
CLVEADTGNIIRFGRVDKVYSGPVDEMLRKHSRFNHLCMGGEKIDKVGEVIRKSYGHF
LNDDSLLTAIYIRHVDREFDTEYHSAEELNLVDPRPKAGVIDISVARQKPSETF"
gene 46488..47552
/locus_tag="YPZ3_pMT0041"
/db_xref="GeneID:8989817"
CDS 46488..47552
/locus_tag="YPZ3_pMT0041"
/codon_start=1
/transl_table=11
/product="putative replication protein A"
/protein_id="YP_003565770.1"
/db_xref="GI:294502033"
/db_xref="GeneID:8989817"
/translation="MSENGNKNIAIVEAFSETDKKTGEVVTLVPNTNNTVQPVALMRL
GLFVPTLKSTSRGRKGQMVSMDASAELKQLSLAKAEGYEDIRISGVRLDMDNDFKTWV
GIIHAFAKHKVVGDTVTLPFVEFVRLCGIPTARSSAKLRKRLDSSLTRIATNTISFRS
KGSDEYYVTHLVQTAKYSTKNDTVSLQADPKIFELYQFDKKVLLQLRAINELSRKESA
QALYTFIESLPPDPAPISLARLRARLNLTSRTITQNATVRKAMEQLREIGYLDYTEVK
RGSSVYFIIHYRRPKLRPALPPTKAAPEEPEEQEDNLPGDGQEDIIDVVPEEKDGEMV
MLSKEELAILEELRKAKARK"
gene complement(48333..48668)
/locus_tag="YPZ3_pMT0042"
/db_xref="GeneID:8989818"
CDS complement(48333..48668)
/locus_tag="YPZ3_pMT0042"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565771.1"
/db_xref="GI:294502034"
/db_xref="GeneID:8989818"
/translation="MKKTALALALFTLPVYANTHVYECEMSVAEVKNDEICNVVKANY
GAMIVDSGEQFYVVRDDRVLSSPYLTRRNGKLSGVGEDKFVYDKSGDVYGVHAKNASY
LFDDCKEVG"
gene complement(49228..49638)
/locus_tag="YPZ3_pMT0043"
/db_xref="GeneID:8989819"
CDS complement(49228..49638)
/locus_tag="YPZ3_pMT0043"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565772.1"
/db_xref="GI:294502035"
/db_xref="GeneID:8989819"
/translation="MKKLYDAANAALDVVDTEIAQGFPEPEWATQLREAIAEMNAPEP
SEDEADWQRFIRMYAEEIGPTPTAEQAMLLKYFKEAGENLPVDDTPHWFHAAWRKFDV
IYTRDLGSKDMVVWHLMHIDKAVDRTLEKFFPPA"
misc_feature complement(49246..49497)
/locus_tag="YPZ3_pMT0043"
/note="hypothetical protein; Region: PHA02053"
/db_xref="CDD:177336"
gene complement(49622..49993)
/locus_tag="YPZ3_pMT0044"
/db_xref="GeneID:8989820"
CDS complement(49622..49993)
/locus_tag="YPZ3_pMT0044"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565773.1"
/db_xref="GI:294502036"
/db_xref="GeneID:8989820"
/translation="MKNYAEMTDFEINCLVAEATGHRPLISQYGWKGSQVGDYTKVIA
IGPNGAGSFDWCNNPVDAWDIISRNRIGIIPARQAGEWRAAHRLVDSSTPQHLIQNPN
PFRAAMIVFLLMQEKKREKTV"
misc_feature complement(49649..49990)
/locus_tag="YPZ3_pMT0044"
/note="Protein of unknown function (DUF2591); Region:
DUF2591; pfam10765"
/db_xref="CDD:220872"
gene complement(50147..50977)
/locus_tag="YPZ3_pMT0045"
/db_xref="GeneID:8989821"
CDS complement(50147..50977)
/locus_tag="YPZ3_pMT0045"
/codon_start=1
/transl_table=11
/product="putative lipoprotein"
/protein_id="YP_003565774.1"
/db_xref="GI:294502037"
/db_xref="GeneID:8989821"
/translation="MKKGLLAVTLAAICTMGLTGCDRVEPGYVGIKVNKLGEDKGIGE
VVGVGRQWTGLNTELYTFPTFKQMKTYDEPFTFQMSDGTAIGHKIGVAYLVNRNKVTT
VFQTYRKGVDDITDTDLRQKIADSLNRLASRMTTDTFIDGGKASLLDNALKDIQAEMS
PVGIEVISLSWVGKPDYPDTVIESINAKVTANQKTLQRQQEVEQRKAEANMLREQAEG
EADAIRKRAQAEADAIKLRGEALRQNPNVMELEAINKWNGQLPQYMTEGANTPFIALK
"
misc_feature complement(50168..50977)
/locus_tag="YPZ3_pMT0045"
/note="Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones]; Region: HflC; COG0330"
/db_xref="CDD:223407"
misc_feature complement(50351..50911)
/locus_tag="YPZ3_pMT0045"
/note="SPFH domain / Band 7 family; Region: Band_7;
pfam01145"
/db_xref="CDD:216327"
misc_feature complement(<50258..>50389)
/locus_tag="YPZ3_pMT0045"
/note="ATP synthase B/B' CF(0); Region: ATP-synt_B;
cl17192"
/db_xref="CDD:247746"
gene complement(51272..52348)
/locus_tag="YPZ3_pMT0046"
/db_xref="GeneID:8989822"
CDS complement(51272..52348)
/locus_tag="YPZ3_pMT0046"
/codon_start=1
/transl_table=11
/product="putative recombinase"
/protein_id="YP_003565775.1"
/db_xref="GI:294502038"
/db_xref="GeneID:8989822"
/translation="MAKGKSALALALKKKIGSNDEIQKVSHWIDSGFPPLNKAISGRY
DGGFPCGRIVEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLN
ADEDDGQWVYKQPDTFEDSVELIGTILKLVRDEELIPETAPICIVADSLASMVPNSKA
EKFDKMAEGTAKDKDQLNMNDNTALARATSANFPTLALWARKYNACIIFLNQVRTKIG
VMFGDPTTSPGGDSPKFYASVRIRLGASVMKDGKEKIGQDVGAECIKNKVAPPFGKCS
WKFYFDPTRGLDVIESLVEYMLEEGYLPKNASGRVEIGDKRYTKSQIVEMYREKPLPE
IIAALQAIDERRAKESSPAETEEA"
misc_feature complement(51446..52291)
/locus_tag="YPZ3_pMT0046"
/note="RecA/RadA recombinase [DNA replication,
recombination, and repair]; Region: RecA; COG0468"
/db_xref="CDD:223544"
misc_feature complement(51425..52213)
/locus_tag="YPZ3_pMT0046"
/note="RecA-like NTPases. This family includes the NTP
binding domain of F1 and V1 H+ATPases, DnaB and related
helicases as well as bacterial RecA and related eukaryotic
and archaeal recombinases. This group also includes
bacterial conjugation proteins and...; Region:
RecA-like_NTPases; cl17233"
/db_xref="CDD:247787"
misc_feature complement(order(52154..52162,52172..52177))
/locus_tag="YPZ3_pMT0046"
/note="Walker A motif; other site"
/db_xref="CDD:238540"
misc_feature complement(order(51899..51904,52088..52093,52097..52099,
52154..52162,52172..52174))
/locus_tag="YPZ3_pMT0046"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:238540"
misc_feature complement(51902..51916)
/locus_tag="YPZ3_pMT0046"
/note="Walker B motif; other site"
/db_xref="CDD:238540"
gene complement(52617..53561)
/locus_tag="YPZ3_pMT0047"
/db_xref="GeneID:8989823"
CDS complement(52617..53561)
/locus_tag="YPZ3_pMT0047"
/codon_start=1
/transl_table=11
/product="putative exonuclease"
/protein_id="YP_003565776.1"
/db_xref="GI:294502039"
/db_xref="GeneID:8989823"
/translation="MNYLFVDGNSLGYYHQQSDKLHNGEMEVQAAFGFVKNVRRYASI
LHARPMILWDGFSDKRRDFYPEYKANRDDDPDMKKMKEGFAIQKPYILKMMTALGVNQ
LIAKDAEADDLAGMLVSRLAPQPTVDHIYLLTGDGDWLQLVRENVSWVSLREDAKHKQ
VNFEQFAELTGLPTPRAFLEAKALQGDTSDNIKGVGGIGDGGAKELLHEWGSVAAMVR
GINDGSIVINKGRYKTAFNKLAKNAFNEKTGCRMLEAFKRNMMLMNLIDTKFPPSEIE
SIKGARDMNAFEQMCCELNFRSFLEDLEVFVLPFERYC"
misc_feature complement(53082..53558)
/locus_tag="YPZ3_pMT0047"
/note="PIN domain of bacteriophage T3, T4 RNase H,
T5-5'nuclease, and homologs; Region: PIN_T4-like; cd09860"
/db_xref="CDD:189030"
misc_feature complement(52725..53552)
/locus_tag="YPZ3_pMT0047"
/note="5'-3' exonuclease; Region: 53EXOc; smart00475"
/db_xref="CDD:214682"
misc_feature complement(order(53148..53150,53154..53156,53226..53231,
53235..53237,53400..53402,53541..53543))
/locus_tag="YPZ3_pMT0047"
/note="active site"
/db_xref="CDD:189030"
misc_feature complement(order(53229..53231,53235..53237,53400..53402,
53541..53543))
/locus_tag="YPZ3_pMT0047"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:189030"
misc_feature complement(order(53082..53084,53091..53093,53097..53099,
53151..53159,53298..53300,53310..53312,53322..53324,
53379..53381,53394..53396,53511..53513,53520..53525,
53532..53534))
/locus_tag="YPZ3_pMT0047"
/note="5' ssDNA interaction site; other site"
/db_xref="CDD:189030"
misc_feature complement(order(53094..53096,53106..53108,53430..53435,
53439..53447,53451..53456,53517..53519,53529..53531))
/locus_tag="YPZ3_pMT0047"
/note="3' ssDNA interaction site; other site"
/db_xref="CDD:189030"
misc_feature complement(order(53148..53150,53154..53156))
/locus_tag="YPZ3_pMT0047"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:189030"
misc_feature complement(52770..53042)
/locus_tag="YPZ3_pMT0047"
/note="H3TH domain of bacteriophage T3, T4 RNase H, T5-5'
nucleases, and homologs; Region: H3TH_T4-like; cd09899"
/db_xref="CDD:188619"
misc_feature complement(order(52950..52952,52965..52973,52977..53009))
/locus_tag="YPZ3_pMT0047"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:188619"
misc_feature complement(order(52992..52994,53001..53003))
/locus_tag="YPZ3_pMT0047"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:188619"
gene complement(53622..54650)
/locus_tag="YPZ3_pMT0048"
/db_xref="GeneID:8989824"
CDS complement(53622..54650)
/locus_tag="YPZ3_pMT0048"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565777.1"
/db_xref="GI:294502040"
/db_xref="GeneID:8989824"
/translation="MSKSLLDLLNKTRGDIASKRGNNVDLTRLKDGNNYLRIFPNKDD
PNGVFFQTFGMHYVKHQNEEGKDVTTAYICEQHTHGHACQLCEMVMEGRARFKGNKAM
EERINSMRATPRYLVNGVLSAREDFADAEKCQLIELPSTVFDDICKVMSEDIADDIGN
PLSKEEGYAFLIKRTGSGRDTKYDVSPKRKVYKGDIPEKLWTTQHDLIAYANQADETR
LLSTARTMGRLIGIAAPAATMSSPAISSAAKSAAAELPGFGSITGHTEGAAAVATAHT
PAPESTSLVDEEILRAAEAEFKPETKPEKVKAPEAAAAASASASAAAASVPADEGLDD
LLAELDAL"
gene complement(54770..55243)
/locus_tag="YPZ3_pMT0049"
/db_xref="GeneID:8989825"
CDS complement(54770..55243)
/locus_tag="YPZ3_pMT0049"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565778.1"
/db_xref="GI:294502041"
/db_xref="GeneID:8989825"
/translation="MVKLIYRNKLEPIKMSADIYEKIMSDLEFDRDNLEEVWRQQPRL
LMEYGSKLARAEREVADAKLSLDAIEAKIYDNERKNLSMNGIKFNESVLEAKVRTNPQ
YLAKRQKLDDARHIADLYKHAVTAFSHRRDMIVQASKMAIVEIERLGAERFHSPR"
gene 55746..56309
/locus_tag="YPZ3_pMT0050"
/db_xref="GeneID:8989826"
CDS 55746..56309
/locus_tag="YPZ3_pMT0050"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565779.1"
/db_xref="GI:294502042"
/db_xref="GeneID:8989826"
/translation="MALYNFTLTLSGVTYETEGLEDALYESGCGDAIVCAYGNSVYVE
FDREAKSLDAAIASAVDNIESAGIGAIVESVDSALVGLSDVAEMTGMSRQAITMLKDG
LRGGGDFPCPIQRIQGQSPLWDWADVANWLEANGRLKENAELAHNARVLSKWNLALRN
SVSKDFVEIEHIASSLIARRRHHAECA"
misc_feature 55980..56141
/locus_tag="YPZ3_pMT0050"
/note="Prophage CP4-57 regulatory protein (AlpA); Region:
Phage_AlpA; cl17523"
/db_xref="CDD:248077"
gene complement(56339..56782)
/locus_tag="YPZ3_pMT0051"
/db_xref="GeneID:8989827"
CDS complement(56339..56782)
/locus_tag="YPZ3_pMT0051"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565780.1"
/db_xref="GI:294502043"
/db_xref="GeneID:8989827"
/translation="MNKENTMNEAQKIAQALAAIPADFQDKAVAATMRSQFWEIIDCP
VTLDLALAFAGLDGADKVSRLRKCARALALKTQDPKACQYLLEIYESDNPEEQLEAFK
VFRNRLVLKVAKEFMEVNKIGDVRQYRLKRQTRVTLSNIFGKKVA"
gene complement(56779..60303)
/locus_tag="YPZ3_pMT0052"
/db_xref="GeneID:8989828"
CDS complement(56779..60303)
/locus_tag="YPZ3_pMT0052"
/codon_start=1
/transl_table=11
/product="DNA polymerase III"
/protein_id="YP_003565781.1"
/db_xref="GI:294502044"
/db_xref="GeneID:8989828"
/translation="MKALMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIAS
VIPLQRAAGDDMAVICGVKLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIK
NEQGYRDVCELMTLANKREQFYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQRRDFA
KIIGTLVTAGGRDNFYSVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDD
ADIKDIAHMVTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMA
STTQDTIIEACTWRWHELPPALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASE
HRVYVDRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIG
ITNVDPIRHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNF
TYLGAASALRDTARIYGVDAADMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPE
AFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPVELRGNARCIAFDKRYCEAMGLIK
LDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGP
MRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLD
ELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQ
AGWIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSE
TKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTILGEDKHQ
GLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRA
REKVGGKFESLEQFEEAVEKRACACNSRVRESLQKVGAFASIEPGSLPATDPERLRDQ
AELMGNLVIDAVKASRPFEMNPKRSAEVNVLMTRMAAEMGLGDDLIRPSIGIKPKIMV
ILDNANGNDGRTGYFMENGYDDFKAKLLTAGDLRMGDLYVTGVCKKVKDKEKDYTKDE
IGQFTDFMREEINLVRPTYVLTCGSRATSLFNNKSKPSDLVGRKEYLPELDVTVFYGF
NPNILYFRPEEGEKLEAILAEVAETISK"
misc_feature complement(59737..60294)
/locus_tag="YPZ3_pMT0052"
/note="PHP domain; Region: PHP; pfam02811"
/db_xref="CDD:217238"
misc_feature complement(<59854..60294)
/locus_tag="YPZ3_pMT0052"
/note="Polymerase and Histidinol Phosphatase domain of
alpha-subunit of bacterial polymerase III; Region:
PHP_PolIIIA; cd07431"
/db_xref="CDD:213986"
misc_feature complement(order(60115..60117,60187..60189,60262..60264,
60283..60285,60289..60291))
/locus_tag="YPZ3_pMT0052"
/note="active site"
/db_xref="CDD:213986"
misc_feature complement(order(60130..60138,60145..60147))
/locus_tag="YPZ3_pMT0052"
/note="PHP Thumb interface [polypeptide binding]; other
site"
/db_xref="CDD:213986"
misc_feature complement(58081..59379)
/locus_tag="YPZ3_pMT0052"
/note="Bacterial DNA polymerase III alpha subunit; Region:
DNA_pol3_alpha; pfam07733"
/db_xref="CDD:219543"
misc_feature complement(56800..57246)
/locus_tag="YPZ3_pMT0052"
/note="Uracil DNA glycosylase superfamily; Region: UDG;
pfam03167"
/db_xref="CDD:217399"
gene complement(60484..61719)
/gene="cobS"
/locus_tag="YPZ3_pMT0053"
/db_xref="GeneID:8989829"
CDS complement(60484..61719)
/gene="cobS"
/locus_tag="YPZ3_pMT0053"
/codon_start=1
/transl_table=11
/product="porphyrin biosynthetic protein"
/protein_id="YP_003565782.1"
/db_xref="GI:294502045"
/db_xref="GeneID:8989829"
/translation="MTATALQQEEHLPEAIVCKWCGKSFHYLKSHISMGRCENIPESA
KGLDVDEVVKMYTSAFPDEPTISRTALVKLNEKRAERHSGEGKVAEISAHPGYAGTVE
YKTELVAAHELLGVTIKELGTPRGKPLQVTVNVNTPYPEFVPEAKKNYVYGDFDLIKD
IFMMLEIGIPGYLWGHAGTGKSSLPTQLCALLNRPLIRAQHTASMEEAHVTGQILARD
GSTYFEPGLLALAMKNGWVYLADEYDFAFPQILGVYQPVLEGEPLIIKEATPDWRRIT
PHKRFAFIGTGNTNGSGDETGLYQGTNIQNAANFSRFGIVSNVKYMSTKAEVNMLAEA
GVIREYAEKMVKFANLVREGYEQHLISQPIGPRELLLSAKIGMMRGDFSAGIEKSFIN
KLPSTSAQAAREVVQKIFG"
misc_feature complement(60505..61701)
/gene="cobS"
/locus_tag="YPZ3_pMT0053"
/note="MoxR-like ATPases [General function prediction
only]; Region: COG0714"
/db_xref="CDD:223786"
misc_feature complement(60781..61203)
/gene="cobS"
/locus_tag="YPZ3_pMT0053"
/note="AAA domain (dynein-related subfamily); Region:
AAA_5; pfam07728"
/db_xref="CDD:219538"
gene complement(61816..64182)
/gene="cobT"
/locus_tag="YPZ3_pMT0054"
/db_xref="GeneID:8989830"
CDS complement(61816..64182)
/gene="cobT"
/locus_tag="YPZ3_pMT0054"
/codon_start=1
/transl_table=11
/product="porphyrin biosynthetic protein"
/protein_id="YP_003565783.1"
/db_xref="GI:294502046"
/db_xref="GeneID:8989830"
/translation="MSKAMTRAVLKEVQDFRDCVKRVVAMLSGKQIPVAERGNEAYVR
YNRRGEPVLVNIPSIPDDASPTLMNAVRGFLDHEVAHILFTDPKVAMKMRERGKAPST
GLWNALEDVFIERRMGQVFNGTRRNLLATQNLVIDKYFKGKVSEAVSICHGNQRELFL
KFFLCPVVRAWDGQSPFIDFMEEHWHLIDKPVALLKEHGIDVAVRNMSNTEDCVKVAA
AIAQIMQDMKDKPEGKLPELKSSAKKPSKSKDESEETPESGDDPSHSESAPKRTKGED
DDKEEQEDDASEEEDSGDSDLPDSLDKDLPIHDKEISDTESKYTEAGEDESGDTPESD
DAGMESGDSDDEGGSDGTGAPTPGDGIREDADDSDGYGSGAAGDGDSDNGEDSDAGRE
ESEGEDEGEEDVADHTDGEGKENEDAAEAPEDSESGFVPAPDEMTLEDALKALDEMEE
GTDEMTEDALSATISKELMSASLSEYRPYDRSYDFIGLIDEAEEHVKRTRKTFGAIPM
HSPVDRYRMVPEGRKLFELKIEKHLSAGVSSTLAKDLERAIASRNRVQFIPGQRRGRI
HGANLYRLAMNDDRVFRKKEDHRAVNACVQQVIDLSGSMGGRKIQLALASAYTIADAL
DRINVPNIITGFTTFGSPDYETMSKRGFTRFEALMLPIIKNWNEKANSPEIRARMGCV
CETFPLLNNVDGESVAQLATLFAGRMEDKKIMLVMSDGAPCAAGDGFHEHLRTVTKEI
ETLSDIDLMAIGVLTDAPRRYYKNYALVNSVEELGPSVVTELSRIILG"
misc_feature complement(63190..64170)
/gene="cobT"
/locus_tag="YPZ3_pMT0054"
/note="Cobalamin biosynthesis protein CobT; Region: CobT;
pfam06213"
/db_xref="CDD:148051"
misc_feature complement(61819..63834)
/gene="cobT"
/locus_tag="YPZ3_pMT0054"
/note="Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism]; Region:
CobT; COG4547"
/db_xref="CDD:226920"
misc_feature complement(61819..62442)
/gene="cobT"
/locus_tag="YPZ3_pMT0054"
/note="Cobalamin biosynthesis protein CobT VWA domain;
Region: CobT_C; pfam11775"
/db_xref="CDD:152211"
misc_feature complement(order(62026..62028,62110..62112,62383..62385))
/gene="cobT"
/locus_tag="YPZ3_pMT0054"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:238119"
gene 64767..65153
/locus_tag="YPZ3_pMT0055"
/db_xref="GeneID:8989831"
CDS 64767..65153
/locus_tag="YPZ3_pMT0055"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565784.1"
/db_xref="GI:294502047"
/db_xref="GeneID:8989831"
/translation="MATNETDSKQGRYAAYIDSLITISPKSQATIAKEVGYKNANNLS
LIKSGKIPLPVDKVRALAVALDADPVRLMLMVLEERHPELLEFFREEGTAPLSADEKR
VLEAFRNRFGDQRGASDQVVEAIKKL"
gene complement(65148..66308)
/locus_tag="YPZ3_pMT0056"
/db_xref="GeneID:8989832"
CDS complement(65148..66308)
/locus_tag="YPZ3_pMT0056"
/codon_start=1
/transl_table=11
/product="putative integrase"
/protein_id="YP_003565785.1"
/db_xref="GI:294502048"
/db_xref="GeneID:8989832"
/translation="MPNILFMHTVKRASLSEWTMKNTFDKARAAENTSREAIEYLERA
SGLSAVSTANFDGDMSFSSAFMLFTRLSLLITRRRPEIAVHCVLIHVMPHISEVKVSD
ISRVLVNQLVNPLILEGKIVQGRRVFSLMKQFLSWCAFQGLIDTSPLNDMSLNKVAGG
AKPVPRERKLTDAEVWVFWNIWDYFNVCEGTKWAARLCLVAARRPDEVLRARKDEFNL
QRDVWNQGTRNKSARQHALPLSPLMRKCVEELFEYGKGSQWLVPSNKKKGVDTPMSKV
AIAQALRRILERPELMDLEPFTPRDLRRTARSYFPALGINQEVARKIMNHSLEGIDRV
YDRHDYMDEMRDALDRFSAYIASIVEQQDLDEIDHKFKGDRLATELIRVNFS"
misc_feature complement(65259..>66041)
/locus_tag="YPZ3_pMT0056"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:241691"
misc_feature complement(65259..66005)
/locus_tag="YPZ3_pMT0056"
/note="Integrase [DNA replication, recombination, and
repair]; Region: XerC; COG0582"
/db_xref="CDD:223655"
misc_feature complement(order(65304..65306,65409..65417,65619..65621,
65694..65699))
/locus_tag="YPZ3_pMT0056"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:238231"
misc_feature complement(order(65304..65306,65331..65333,65400..65402,
65409..65411,65619..65621,65697..65699))
/locus_tag="YPZ3_pMT0056"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:238231"
misc_feature complement(order(65304..65306,65331..65333,65400..65402,
65409..65411,65697..65699))
/locus_tag="YPZ3_pMT0056"
/note="active site"
/db_xref="CDD:238231"
gene complement(67011..67523)
/locus_tag="YPZ3_pMT0057"
/db_xref="GeneID:8989833"
CDS complement(67011..67523)
/locus_tag="YPZ3_pMT0057"
/codon_start=1
/transl_table=11
/product="F1 capsule antigen"
/protein_id="YP_003565786.1"
/db_xref="GI:294502049"
/db_xref="GeneID:8989833"
/translation="MKKISSVIAIALFGTIATANAADLTASTTATATLVEPARITLTY
KEGAPITIMDNGNIDTELLVGTLTLGGYKTGTTSTSVNFTDAAGDPMYLTFTSQDGNN
HQFTTKVIGKDSRDFDISPKVNGENLVGDDVVLATGSQDFFVRSIGSKGGKLAAGKYT
DAVTVTVSNQ"
misc_feature complement(67014..67421)
/locus_tag="YPZ3_pMT0057"
/note="Caf1 Capsule antigen; Region: Antig_Caf1;
pfam09255"
/db_xref="CDD:72671"
gene complement(67604..70018)
/gene="caf1A"
/locus_tag="YPZ3_pMT0058"
/db_xref="GeneID:8989834"
CDS complement(67604..70018)
/gene="caf1A"
/locus_tag="YPZ3_pMT0058"
/codon_start=1
/transl_table=11
/product="putative F1 capsule anchoring protein"
/protein_id="YP_003565787.1"
/db_xref="GI:294502050"
/db_xref="GeneID:8989834"
/translation="MLDTNSGESIDVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFR
LEKHNGKELLWPCLSSLQLTKYGIDIDKYPDLIKSGTEQCVDLLAIPHSDVQFYFNQQ
KLSLIVPPQALLPRFDGIMPMQLWDDGIPALFMNYNTNMQTRKFREGGKSLDSYYAQL
QPGLNIGAWRFRSSTSWWKQQGWQRSYIYAERGLNTIKSRLTLGETYSDSSIFDSIPI
KGIKIASDESMVPYYQWNFAPVVRGIARTQARVEVLRDGYTVSNELVPSGPFELANLP
LGGGSGELKVIIHESDGTKQVFTVPYDTPAVALRKGYFEYSMMGGEYRPANDLTQTSY
VGALGMKYGLPRNLTLYGGLQGSQNYHAAALGIGAMLGDFGAISTDVTQADSQKNKQK
KESGQRWRVRYNKYLQSGTSLNIASEEYATEGFNKLADTLNTYCKPNTRNDCRFDYAK
PKNKVQFNLSQSIPGSGTLNFSGYRKNYWRDSRSTTSFSVGYNHFFRNGMSLTLNLSK
TQNINKYGEKTSELLSNIWLSFPLSRWLGNNSINSNYQMTSDSHGNTTHEVGVYGEAF
DRQLYWDVRERFNEKGRKYTSNALNLNYRGTYGEISGNYSYDQTQSQLGIGVNGNMVI
TQYGITAGQKTGDTIALVQAPDISGASVGYWPGMKTDFRGYTNYGYLTPYRENKVEIN
PVTLPNDAEITNNIVSVIPTKGAVVLAKFNARIGGRLFLHLKRSDNKPVPFGSIVTIE
GQSSSSGIVGDNSGVYLTGLPKKSKILVKWGRDKNQSCSSNVVLPEKTDISGAYRLST
TCILNN"
misc_feature complement(67616..70018)
/gene="caf1A"
/locus_tag="YPZ3_pMT0058"
/note="P pilus assembly protein, porin PapC [Cell motility
and secretion / Intracellular trafficking and secretion];
Region: FimD; COG3188"
/db_xref="CDD:225729"
misc_feature complement(69593..70018)
/gene="caf1A"
/locus_tag="YPZ3_pMT0058"
/note="PapC N-terminal domain; Region: PapC_N; pfam13954"
/db_xref="CDD:222472"
misc_feature complement(67886..69550)
/gene="caf1A"
/locus_tag="YPZ3_pMT0058"
/note="Type VII secretion system (T7SS), usher protein;
Region: Usher; pfam00577"
/db_xref="CDD:216001"
misc_feature complement(67652..67858)
/gene="caf1A"
/locus_tag="YPZ3_pMT0058"
/note="PapC C-terminal domain; Region: PapC_C; pfam13953"
/db_xref="CDD:222471"
gene complement(70130..70906)
/gene="caf1M"
/locus_tag="YPZ3_pMT0059"
/db_xref="GeneID:8989835"
CDS complement(70130..70906)
/gene="caf1M"
/locus_tag="YPZ3_pMT0059"
/codon_start=1
/transl_table=11
/product="putative F1 chaperone protein"
/protein_id="YP_003565788.1"
/db_xref="GI:294502051"
/db_xref="GeneID:8989835"
/translation="MILNRLSTLGIITFGMLSFAANSAQPDIKFASKEYGVTIGESRI
IYPLDAAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLR
IAQAGGVFPRDKESLKWLCVKGIPPKDEDIWVDDATNKQKFNPDKDVGVFVQFAINNC
IKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSHYIP
PKSTWAFDLPKGLAGARNVSWRIINDQGGLDRLYSKNVTL"
misc_feature complement(70142..70906)
/gene="caf1M"
/locus_tag="YPZ3_pMT0059"
/note="P pilus assembly protein, chaperone PapD [Cell
motility and secretion / Intracellular trafficking and
secretion]; Region: FimC; COG3121"
/db_xref="CDD:225663"
misc_feature complement(70394..70801)
/gene="caf1M"
/locus_tag="YPZ3_pMT0059"
/note="Gram-negative pili assembly chaperone, N-terminal
domain; Region: Pili_assembly_N; pfam00345"
/db_xref="CDD:215870"
misc_feature complement(70166..70339)
/gene="caf1M"
/locus_tag="YPZ3_pMT0059"
/note="Gram-negative pili assembly chaperone, C-terminal
domain; Region: Pili_assembly_C; pfam02753"
/db_xref="CDD:217216"
gene 71234..72139
/locus_tag="YPZ3_pMT0060"
/db_xref="GeneID:8989836"
CDS 71234..72139
/locus_tag="YPZ3_pMT0060"
/codon_start=1
/transl_table=11
/product="putative F1 operon positive regulatory protein"
/protein_id="YP_003565789.1"
/db_xref="GI:294502052"
/db_xref="GeneID:8989836"
/translation="MLKQMTVNSIIQYIEENLESKFINIDCLVLYSGFSRRYLQISFK
EYVGMPIGTYIRVRRASRAAALLRLTRLTIIEISAKLFYDSQQTFTREFKKIFGYTPR
QYRMIPFWSFKGLLGRREINCEYLQPRICYLKERNIIGQCFNFRDLVFYSGIDSKCRL
GKLYDSLKKNTAITVSNRIPFHDKTNDIIARTVVWDRNKHFSDSEIKVDKGLYAYFFF
NDTYDQYVHHMYNIYYNSLPIYNLNKRDGYDVEVIKRRNDNTIDCHYFLPIYCDDMEF
YNEMQVYHNNIVKPEMSVTLGLPKS"
misc_feature 71300..71548
/locus_tag="YPZ3_pMT0060"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature <71450..71548
/locus_tag="YPZ3_pMT0060"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:215763"
misc_feature 71612..72040
/locus_tag="YPZ3_pMT0060"
/note="GyrI-like small molecule binding domain; Region:
GyrI-like; pfam06445"
/db_xref="CDD:219032"
gene 72488..73696
/locus_tag="YPZ3_pMT0061"
/db_xref="GeneID:8989837"
CDS 72488..73696
/locus_tag="YPZ3_pMT0061"
/codon_start=1
/transl_table=11
/product="putative transposase"
/protein_id="YP_003565790.1"
/db_xref="GI:294502053"
/db_xref="GeneID:8989837"
/translation="MDEKKLKALAAELAKGLKTEADLNAFSRMLTKLTVETALNAELT
EHLGHEKNTPKSGSNTRNGYSSKTLLCDDGEIELNTPRDRENTFEPQLIKKNQTRITQ
MDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVAEWQNRQLDALY
PIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTEL
KNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTSG
LKMVYQAPTEEAALMALDKFAEAWDDKYPQISKSWRTHWENLNTFFGYPPDIRKAIYT
TNAIESVNSVIRAAIKKRKVFPTDDSVRKVVYLAIKDASKKWSMPIQNWRLAMSRFII
EFGDRLSDHL"
misc_feature 72551..73684
/locus_tag="YPZ3_pMT0061"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3328"
/db_xref="CDD:225865"
misc_feature 73031..73267
/locus_tag="YPZ3_pMT0061"
/note="MULE transposase domain; Region: MULE; pfam10551"
/db_xref="CDD:220806"
gene 74165..75187
/locus_tag="YPZ3_pMT0062"
/db_xref="GeneID:8989838"
CDS 74165..75187
/locus_tag="YPZ3_pMT0062"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="YP_003565791.1"
/db_xref="GI:294502054"
/db_xref="GeneID:8989838"
/translation="MTITTVGIDLAKNVFAVHCVDQNGKTVLVKPKVSRAALPELIAG
LPPCVIGMEACSGAHYWARLFREYGHEPRLMAAKFVSPYHMAGKSGKNDAADAQAICE
AVRRPHMRFVPVKDESQQAMQCLHRTRQGFIEEKTATYNRLRGLISEFGVIAPQSTDA
LRRMVSEQKNSLPFQVQQCIDDLLEHVDRIEANIADYDRILSRMAKTDHRSQRLMELK
GVGPTTACALVASIGNAHDFKNGRQLAAWLGLTPSQYSSGGKSKLGRITKAGDSYLRT
LLVQGARSVLIGADKRTDSFSRWVCTLVERRGYWRAVVAIAAKNARLCWASLHYGDDF
RLYSAS"
misc_feature 74174..75148
/locus_tag="YPZ3_pMT0062"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG3547"
/db_xref="CDD:226077"
misc_feature 74180..74590
/locus_tag="YPZ3_pMT0062"
/note="Transposase; Region: DEDD_Tnp_IS110; pfam01548"
/db_xref="CDD:216564"
misc_feature 74798..75022
/locus_tag="YPZ3_pMT0062"
/note="Transposase IS116/IS110/IS902 family; Region:
Transposase_20; pfam02371"
/db_xref="CDD:217002"
gene complement(75386..75703)
/locus_tag="YPZ3_pMT0063"
/db_xref="GeneID:8989839"
CDS complement(75386..75703)
/locus_tag="YPZ3_pMT0063"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565792.1"
/db_xref="GI:294502055"
/db_xref="GeneID:8989839"
/translation="MADYLSSPQVMALIHYLLQAGESADSEAFVRELAQRVPQHGDAL
MTIAQQLEQKGIEKGIEKGIQLGEQKGKLEVGVSLDIENYCTIRASPACQRRYSRFLS
ALQ"
misc_feature complement(75476..>75703)
/locus_tag="YPZ3_pMT0063"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5464"
/db_xref="CDD:227751"
gene 76548..77018
/locus_tag="YPZ3_pMT0064"
/db_xref="GeneID:8989840"
CDS 76548..77018
/locus_tag="YPZ3_pMT0064"
/codon_start=1
/transl_table=11
/product="reverse transcriptase"
/protein_id="YP_003565793.1"
/db_xref="GI:294502056"
/db_xref="GeneID:8989840"
/translation="MIISEMQRKLATWAATDPPRRVERLLRLITQPEWLAEAARITLA
SKGAHTPGVDGVNKTTLQARLAAELQILRDELLSGCYQPLPARRVYIPKSNGKQRPLG
IPTLRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAISSPIVGKHEGAG"
misc_feature 76557..>77009
/locus_tag="YPZ3_pMT0064"
/note="Retron-type reverse transcriptase [DNA replication,
recombination, and repair]; Region: COG3344"
/db_xref="CDD:225881"
misc_feature 76806..>76979
/locus_tag="YPZ3_pMT0064"
/note="RT_G2_intron: Reverse transcriptases (RTs) with
group II intron origin. RT transcribes DNA using RNA as
template. Proteins in this subfamily are found in
bacterial and mitochondrial group II introns. Their most
probable ancestor was a retrotransposable...; Region:
RT_G2_intron; cd01651"
/db_xref="CDD:238828"
gene complement(77263..79026)
/locus_tag="YPZ3_pMT0065"
/db_xref="GeneID:8989841"
CDS complement(77263..79026)
/locus_tag="YPZ3_pMT0065"
/codon_start=1
/transl_table=11
/product="murine toxin"
/protein_id="YP_003565794.1"
/db_xref="GI:294502057"
/db_xref="GeneID:8989841"
/translation="MLQIDNVINNIGNYFHHLSNINYIRLLDTPHAWGAPFGKEIMQQ
SYLRQEEFAGAMTEVLRNSRYRCDISSLNSPDAEWRKVIFKAIDESLSKKMGRTQPTQ
YRFLFGQSPTVFMNGLSAATNGSPDFVAFKSELIQLIKERGQYWEKMPEIWLGRFFRI
EEGLATSFMRNVYPDFPPINDTRMTWNHTKIMASDGTEALVGGHNMNMDLFRNYPPVH
DVSIITHGSSAYGSQLYLNELWSCNSDLLKKEYFDYESMMWAVGTKFYDKPEDPLKSS
VAMNYMKQRQEDLLNLHENFNQKVATRISEYENMEEYKKADRVLSVGKYWTGPNMEHD
YQRGSEIMKEQLIKNAKRIIRISQQDLVSAWKKKWKDHFTCNWIIEALLENKDLHIHV
VVSALDAAAGAAGDQYSFGSGAERTYELFKYYLTHDIDTDEVLDDPDGSRADALKRIL
IAPFFFTDKVPDENTIEGETYKWPDLEQSAYTATLKQKPLSEKPPHQGIIGSALMSAI
KGSGLFYPKVPVAPGNHAKLMIIDDELYVVGSDNLYPGYLSEFDYLVEGKDAVNELMK
SYWEPLWKYSSPHAFPKLSPN"
misc_feature complement(78307..78969)
/locus_tag="YPZ3_pMT0065"
/note="Putative catalytic domain, repeat 1, of Yersinia
pestis murine toxin-like proteins; Region: PLDc_Ymt_1;
cd09150"
/db_xref="CDD:197248"
misc_feature complement(order(78370..78372,78412..78414,78418..78420,
78457..78459,78463..78465))
/locus_tag="YPZ3_pMT0065"
/note="putative active site [active]"
/db_xref="CDD:197248"
misc_feature complement(78463..78465)
/locus_tag="YPZ3_pMT0065"
/note="catalytic site [active]"
/db_xref="CDD:197248"
misc_feature complement(77287..78078)
/locus_tag="YPZ3_pMT0065"
/note="Putative catalytic domain, repeat 2, of Yersinia
pestis murine toxin-like proteins; Region: PLDc_Ymt_2;
cd09151"
/db_xref="CDD:197249"
misc_feature complement(77308..>77454)
/locus_tag="YPZ3_pMT0065"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(order(77377..77379,77401..77403,77407..77409,
77446..77448,77452..77454))
/locus_tag="YPZ3_pMT0065"
/note="putative active site [active]"
/db_xref="CDD:197249"
misc_feature complement(77452..77454)
/locus_tag="YPZ3_pMT0065"
/note="catalytic site [active]"
/db_xref="CDD:197249"
gene complement(79104..79592)
/locus_tag="YPZ3_pMT0066"
/db_xref="GeneID:8989842"
CDS complement(79104..79592)
/locus_tag="YPZ3_pMT0066"
/codon_start=1
/transl_table=11
/product="putative phospholipase D"
/protein_id="YP_003565795.1"
/db_xref="GI:294502058"
/db_xref="GeneID:8989842"
/translation="MRFKLSVIIFVLVSASALATPSFNVGFSPSHTALENVLSVVNNA
QSSLDVEAYTFTSKQISTAIVSAQKRGVNVRVVADAKANRLNYSAIHYLAQQHVPVRL
NNNYSIHHNKVMIADGDTIQTGSMNYTTNGDTHNAENVLVIRGAPEIAGKYQVEFNRL
WA"
misc_feature complement(79107..79529)
/locus_tag="YPZ3_pMT0066"
/note="Catalytic domain of EDTA-resistant nuclease Nuc
from Salmonella typhimurium and similar proteins; Region:
PLDc_Nuc; cd09170"
/db_xref="CDD:197267"
misc_feature complement(79110..79484)
/locus_tag="YPZ3_pMT0066"
/note="PLD-like domain; Region: PLDc_2; pfam13091"
/db_xref="CDD:221916"
misc_feature complement(order(79179..79181,79212..79214,79218..79220,
79257..79259,79263..79265))
/locus_tag="YPZ3_pMT0066"
/note="putative active site [active]"
/db_xref="CDD:197267"
misc_feature complement(79263..79265)
/locus_tag="YPZ3_pMT0066"
/note="catalytic site [active]"
/db_xref="CDD:197267"
gene complement(80629..81609)
/locus_tag="YPZ3_pMT0067"
/db_xref="GeneID:8989843"
CDS complement(80629..81609)
/locus_tag="YPZ3_pMT0067"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565796.1"
/db_xref="GI:294502059"
/db_xref="GeneID:8989843"
/translation="MIAFTHHFSESELMKKKNSTPTPHDATFRQFLTQPEIARDFMEL
HLPAELRAICDLSTLKLESGSFVEDDLRQYFSDVLYSLDTVEGEGYVHVLIEHQSSPD
KHMAFRLIRYAIAAMQRHLEAGHAKLPLVIPVLFYVGKRSPYPYSTRWLDEFDDPELA
HKLYSGAFPLVDVTVIPDDDIMEHRSMAALTLLQKHIHQRDIATLTDRLATLLMADYL
SSPQVMALIHYLLQAGESADSEAFVRELAQRVPQHGDALMTIAQQLEQKGIEKGRMEG
RTEGIQLGEQRGIEKGKLEVARSLLKMGMPIESVQEATGLSEDDLAQIRH"
misc_feature complement(80635..81546)
/locus_tag="YPZ3_pMT0067"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5464"
/db_xref="CDD:227751"
misc_feature complement(80941..81546)
/locus_tag="YPZ3_pMT0067"
/note="Putative transposase, YhgA-like; Region:
Transposase_31; pfam04754"
/db_xref="CDD:218244"
misc_feature complement(80725..80814)
/locus_tag="YPZ3_pMT0067"
/note="Essential protein Yae1, N terminal; Region: Yae1_N;
pfam09811"
/db_xref="CDD:204317"
gene complement(81636..82256)
/locus_tag="YPZ3_pMT0068"
/db_xref="GeneID:8989844"
CDS complement(81636..82256)
/locus_tag="YPZ3_pMT0068"
/codon_start=1
/transl_table=11
/product="putative resolvase"
/protein_id="YP_003565797.1"
/db_xref="GI:294502060"
/db_xref="GeneID:8989844"
/translation="MLIFGYLRASTSEQDATRAKNALKNFARLHGHRIAGWYVDNISG
ATMTRPKLVQLLEEAEPGDIILIEQVDRLSRLDDVGWEALRKQITDKQLSIVSLDLPT
SHLALNNAVSDEFTRSMLKAVNGMMLDMLAAISRKDYEDRRRRQAEGISKAKAEGKYR
GRVADAQKHELIRTLRLLHGKSLRETARLAGVSKMTVIRVCQQAEG"
misc_feature complement(81642..82256)
/locus_tag="YPZ3_pMT0068"
/note="Site-specific recombinases, DNA invertase Pin
homologs [DNA replication, recombination, and repair];
Region: PinR; COG1961"
/db_xref="CDD:224872"
misc_feature complement(81810..82250)
/locus_tag="YPZ3_pMT0068"
/note="Serine recombinase (SR) family, Partitioning
(par)-Resolvase subfamily, catalytic domain; Serine
recombinases catalyze site-specific recombination of DNA
molecules by a concerted, four-strand cleavage and
rejoining mechanism which involves a transient...; Region:
SR_Res_par; cd03767"
/db_xref="CDD:239736"
misc_feature complement(order(82032..82034,82041..82046,82227..82229,
82233..82235))
/locus_tag="YPZ3_pMT0068"
/note="catalytic residues [active]"
/db_xref="CDD:239736"
misc_feature complement(82227..82229)
/locus_tag="YPZ3_pMT0068"
/note="catalytic nucleophile [active]"
/db_xref="CDD:239736"
gene 83281..84516
/gene="parA"
/locus_tag="YPZ3_pMT0069"
/db_xref="GeneID:8989845"
CDS 83281..84516
/gene="parA"
/locus_tag="YPZ3_pMT0069"
/codon_start=1
/transl_table=11
/product="putative partitioning protein A"
/protein_id="YP_003565798.1"
/db_xref="GI:294502061"
/db_xref="GeneID:8989845"
/translation="MGRESISGETMKRDYGSVGTIALRASALLQAMSRDIEEQRKEFN
LTEYHQTYTRNAVAKLPKLSRRIVELAVKEMEESGYEFNKKQVGNVEQYALTIQNVID
IYAHRQIPKYRDIHKAPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI
DLDPQASSTMFLDHTHSIGTVLETAAQAMLNDLDAETLREAVIRPTIIPGVDVIPASI
DDGFVASQWESLVAEHLPGLKPSEVLRKTIIDRIAGDYDFVFIDTGPHLDPFLLNGLA
ASDLLLTPTPPAQVDFHSTLKYLTRLPEMLERLEEEGVEPRLSASIGFMSKMTSKRDH
ETSHSLAREVYASNILDSSLPRLDGFERCGESFDTIISANPVSYPGSAEALKKARTEA
ERFTKAVFDRIEYIRGASK"
misc_feature 83632..84465
/gene="parA"
/locus_tag="YPZ3_pMT0069"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Soj;
COG1192"
/db_xref="CDD:224113"
misc_feature 83641..>83775
/gene="parA"
/locus_tag="YPZ3_pMT0069"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:238997"
misc_feature 83662..83682
/gene="parA"
/locus_tag="YPZ3_pMT0069"
/note="P-loop; other site"
/db_xref="CDD:238997"
misc_feature 83680..83682
/gene="parA"
/locus_tag="YPZ3_pMT0069"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:238997"
misc_feature <84046..>84174
/gene="parA"
/locus_tag="YPZ3_pMT0069"
/note="The Fer4_NifH superfamily contains a variety of
proteins which share a common ATP-binding domain.
Functionally, proteins in this superfamily use the energy
from hydrolysis of NTP to transfer electron or ion;
Region: Fer4_NifH; cl17203"
/db_xref="CDD:247757"
gene 84513..85484
/gene="parB"
/locus_tag="YPZ3_pMT0070"
/db_xref="GeneID:8989846"
CDS 84513..85484
/gene="parB"
/locus_tag="YPZ3_pMT0070"
/codon_start=1
/transl_table=11
/product="partitioning protein B"
/protein_id="YP_003565799.1"
/db_xref="GI:294502062"
/db_xref="GeneID:8989846"
/translation="MKQVIARGRVLGNSNSEFARMLEGDGDVKTFTLKSGVQARFVKT
VVLSGEVESKTFVDASVNGRDQTMLTRESVSDISRTIKLQQFFPAIGREVNGLIEILD
GTRRRAACIFNNVKFEILVTKDDISLADARQLAKDIQTAREHSLRELGKRLEVTYGTS
MTKEDIALKENLSPAKVTRAFQAAAVPDEMVAVFPVINDISLSDYQFLLKLAEEANNK
QTSVTELMEKVQHRLKTMPDYPAIDKSKILAVIRSESKLLTALPTRTVQTEKLREFSD
RNQFARKKTDPKKRLVVYEFSRISAEAQSEIDKAIKRILERLPESGE"
misc_feature 84648..85151
/gene="parB"
/locus_tag="YPZ3_pMT0070"
/note="ParB/RepB/Spo0J family partition protein; Region:
parB_part; TIGR00180"
/db_xref="CDD:232860"
misc_feature 84699..84926
/gene="parB"
/locus_tag="YPZ3_pMT0070"
/note="ParB-like nuclease domain; Region: ParB;
smart00470"
/db_xref="CDD:214678"
misc_feature 85092..85463
/gene="parB"
/locus_tag="YPZ3_pMT0070"
/note="ParB family; Region: ParB; pfam08775"
/db_xref="CDD:149741"
gene 85863..87260
/locus_tag="YPZ3_pMT0071"
/db_xref="GeneID:8989847"
CDS 85863..87260
/locus_tag="YPZ3_pMT0071"
/codon_start=1
/transl_table=11
/product="putative DNA-binding protein"
/protein_id="YP_003565800.1"
/db_xref="GI:294502063"
/db_xref="GeneID:8989847"
/translation="MDMAIAGCDLPTFATRLNEVLTLSVPVRTPEKLFGRDKQLETIQ
LALHSPGRHVFIYGDRGVGKTSLAHTAASLIQSSDNRPITVSCDHDSTLETVIESVIS
QGMMRMPVDRYKTSATFGLNIPVLKAEARVEERETSRVRSVVNMASAVEALNYLTERY
SDNTVIVIDEFDLIRSEEQRARFGVLLKQLSDGDVPVRIIFTGIGQSVSDLIGGHLSS
QRQIEQVDLERLHWTGRQRIVESAFRYFDINIPDDIADRICALSDGFPYYVHLMCSKL
LHECYMADEVVSTVTRDLFLASLDAAVLSAEETLRSCYEAATCRDEHMHHILWAMAEG
ADLNRMKDHIITSYIQVMKYLDIEPLTQKNFDSRFARLRKENHGSILCHALVGKDGVR
PGWFRFRENMIRGFVRMQAEKCGIVLDFDRQYSAHTASTRTAAVRGVYNPLSTVERSV
ARLRRDDEKEAEENE"
misc_feature 85953..87257
/locus_tag="YPZ3_pMT0071"
/note="Predicted ATPase (AAA+ superfamily) [General
function prediction only]; Region: COG1672"
/db_xref="CDD:224586"
misc_feature 85962..86498
/locus_tag="YPZ3_pMT0071"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 86034..86057
/locus_tag="YPZ3_pMT0071"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(86037..86060,86367..86369,86478..86480)
/locus_tag="YPZ3_pMT0071"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 86355..86372
/locus_tag="YPZ3_pMT0071"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene 88123..88800
/locus_tag="YPZ3_pMT0072"
/db_xref="GeneID:8989848"
CDS 88123..88800
/locus_tag="YPZ3_pMT0072"
/codon_start=1
/transl_table=11
/product="putative DNA methylase"
/protein_id="YP_003565801.1"
/db_xref="GI:294502064"
/db_xref="GeneID:8989848"
/translation="MSRFIQGNCVHIMSGFPDNAVDFILTDPPYLVGFRDRQGRTIAG
DKTDEWLQPACHEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYT
SKAAYVGYRHECAYILAKGRPPLPQNPLNDVIAWKYSGNRHHPTEKPVTSLQPLIESF
THPGAIVLDPFAGSGSTCVAALQAGRRYIGIELLEQYHRAGQQRLAAVRRAMQYPAAN
DEFPEAA"
misc_feature 88123..88797
/locus_tag="YPZ3_pMT0072"
/note="putative methylase; Provisional; Region: PRK13699"
/db_xref="CDD:184255"
misc_feature 88123..88782
/locus_tag="YPZ3_pMT0072"
/note="DNA modification methylase [DNA replication,
recombination, and repair]; Region: COG0863"
/db_xref="CDD:223931"
gene 89032..89451
/locus_tag="YPZ3_pMT0073"
/db_xref="GeneID:8989849"
CDS 89032..89451
/locus_tag="YPZ3_pMT0073"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565802.1"
/db_xref="GI:294502065"
/db_xref="GeneID:8989849"
/translation="MYGTCETLCRLLREQYPAETPLNLIVWSPADIEALADGMEYAVS
EQDTRAVLARMDAIPEEQQLESGVSAGAVMDLIEQVKEAVPAVMVPADLLETLLTTAE
QALWHREWTARDSNHPVPESVTRRLADAAKVRALLKK"
misc_feature 89032..89448
/locus_tag="YPZ3_pMT0073"
/note="Protein of unknown function (DUF1380); Region:
DUF1380; pfam07128"
/db_xref="CDD:148627"
gene 89505..90284
/locus_tag="YPZ3_pMT0074"
/db_xref="GeneID:8989850"
CDS 89505..90284
/locus_tag="YPZ3_pMT0074"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003565803.1"
/db_xref="GI:294502066"
/db_xref="GeneID:8989850"
/translation="MQETTTLNALVMRRARDLIADYGWPDHTDVDQRDPVNKPGWISI
YVRLDAANIVHLLPLLCSGDIPAELQNAMTKIAGTSAQIILSGSRYADAPQLPEDGTQ
IAFPWAGEWLTEPEIQAVTDCLSRAVRDVSRQVWEDARRIKAALTTRGETLFYRQTRN
FRLVVKENDMPCWLDDDDNLPVVLDAILNKGARYSSVEFFVISDKVDQILACGQMCDV
LRIPGEPPRRWMDLTLLHEVMAEARAEISLVRNALSAIRPV"
gene 90683..91189
/locus_tag="YPZ3_pMT0075"
/db_xref="GeneID:8989851"
CDS 90683..91189
/locus_tag="YPZ3_pMT0075"
/codon_start=1
/transl_table=11
/product="antirestriction protein"
/protein_id="YP_003565804.1"
/db_xref="GI:294502067"
/db_xref="GeneID:8989851"
/translation="MRTTTTTPAVYVGTYHKYNCGSIFGKWFELTEFDGREDFYEACQ
ALHADEWDAEFMFQDQEGIPSQFVSESAIDWDFIAAYKRAEEEGREAAFIAWAEYTGE
CDYDAFDDAYRGEAESEEDYAQEMVDDNGLLNEVPEPLRSYFDFEAYARDLFSSGYVF
HDGYVFGN"
misc_feature 90683..91186
/locus_tag="YPZ3_pMT0075"
/note="Antirestriction protein [General function
prediction only]; Region: ArdA; COG4734"
/db_xref="CDD:227077"
gene 92205..94214
/locus_tag="YPZ3_pMT0076"
/db_xref="GeneID:8989852"
CDS 92205..94214
/locus_tag="YPZ3_pMT0076"
/codon_start=1
/transl_table=11
/product="putative DNA-binding protein"
/protein_id="YP_003565805.1"
/db_xref="GI:294502068"
/db_xref="GeneID:8989852"
/translation="MSVTDVKAKAPKKASSKKITKAQEEALKAALEAAVIEYVPLSSL
AKSPLNVRTIPYSVDSVRGLADSIEALGLLQNLIVHTLADGQSGVAAGGRRLTALNLL
AQEDRLAADHTVMVKRVSDDIAALASVAENEQRAAMHPAEQIAGFRTLAEQGKTPAQI
GDALGFGSRHVQRMLKLANLAPSLMEKLAQDELTVEQCQALCLEDDPARQVEVFENVK
ASWSNAPAHLIKRAITETEMRTDNAKFRFIGRDAYEAAGGYVREDLFSQDEGDGTADS
VLVERLVQEKLERIAQDIQQREGWAWSRGRAARIWYHGEDGKEFVQPVEPDPVYTPEQ
QQRLDALREQYDTYDSVCDESDAIEADILAIQEAAEASAWTDDMKSGAGVMVSLYEGQ
VYVQRGVRLKADMPEETVTSSVTVPFTSRQPDAAEGISVPLLTKMTSERTLAVQAALM
QQPEKAVALMVWRMCTCVFSGCLTTTHPFRISLTVSHGSLTENAPSGKDGAAFEMLMT
ERARLKALLPEGWEKDFTTFFALDGGVLMSLMAFCTACSVDGVQTRDMGHTSRSPLDT
VEAAIGFHLRDWWQPTKDNYFGSLKHPQIVASLKEAGLTGAAGDAEKMKKGDAAAHAE
HFMQHTRWVPAWLKGPEPAAESGADDAVSDTDSTDNDTTNTAHAA"
misc_feature 92307..92903
/locus_tag="YPZ3_pMT0076"
/note="Stage 0 sporulation protein J (antagonist of Soj)
containing ParB-like nuclease domain [Transcription];
Region: Spo0J; COG1475"
/db_xref="CDD:224392"
misc_feature 92313..92600
/locus_tag="YPZ3_pMT0076"
/note="ParB-like nuclease domain; Region: ParBc;
pfam02195"
/db_xref="CDD:216926"
CONTIG join(CP001595.1:1..94251)
//
