LOCUS NC_014027 9609 bp DNA circular CON 08-JUN-2013
DEFINITION Yersinia pestis Z176003 plasmid pPCP1, complete sequence.
ACCESSION NC_014027
VERSION NC_014027.1 GI:294509193
DBLINK Project: 47317
BioProject: PRJNA47317
KEYWORDS .
SOURCE Yersinia pestis Z176003
ORGANISM Yersinia pestis Z176003
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Yersinia.
REFERENCE 1 (bases 1 to 9609)
AUTHORS Shen,X., Wang,Q., Xia,L., Zhu,X., Zhang,Z., Liang,Y., Cai,H.,
Zhang,E., Wei,J., Chen,C., Song,Z., Zhang,H., Yu,D. and Hai,R.
TITLE Complete genome sequences of Yersinia pestis from natural foci in
China
JOURNAL J. Bacteriol. 192 (13), 3551-3552 (2010)
PUBMED 20453098
REFERENCE 2 (bases 1 to 9609)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2010) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 9609)
AUTHORS Hai,R., Yu,D., Xia,L., Zhu,X., Liang,Y., Shen,X., Zhang,E. and
Zhang,H.
TITLE Direct Submission
JOURNAL Submitted (15-JAN-2009) State Key Laboratory for Infectious Disease
Prevention and Control, Institute for Communicable Disease Control
and Prevention, Chinese Center for Disease Control and Prevention,
No.5 Liuzi Changping, Beijing, Beijing 102206, China
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP001596.
DNA and bacteria are available from Institute for Communicable
Disease Control and Prevention, Chinese Center for Disease Control
and Prevention.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..9609
/organism="Yersinia pestis Z176003"
/mol_type="genomic DNA"
/strain="Z176003"
/db_xref="taxon:637386"
/plasmid="pPCP1"
gene 87..1109
/locus_tag="YPZ3_pPCP0001"
/db_xref="GeneID:8997199"
CDS 87..1109
/locus_tag="YPZ3_pPCP0001"
/codon_start=1
/transl_table=11
/product="putative transposase"
/protein_id="YP_003566127.1"
/db_xref="GI:294509194"
/db_xref="GeneID:8997199"
/translation="MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEP
PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMR
YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFS
PRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVA
NQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDS
FCRGVA"
misc_feature 87..959
/locus_tag="YPZ3_pPCP0001"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG4584"
/db_xref="CDD:226950"
misc_feature 93..200
/locus_tag="YPZ3_pPCP0001"
/note="Helix-turn-helix domain of Hin and related
proteins, a family of DNA-binding domains unique to
bacteria and represented by the Hin protein of Salmonella.
The basic HTH domain is a simple fold comprised of three
core helices that form a right-handed...; Region:
HTH_Hin_like; cd00569"
/db_xref="CDD:119388"
misc_feature order(180..185,189..197)
/locus_tag="YPZ3_pPCP0001"
/note="DNA-binding interface [nucleotide binding]; DNA
binding site"
/db_xref="CDD:119388"
misc_feature 444..812
/locus_tag="YPZ3_pPCP0001"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:216050"
gene 1109..1888
/locus_tag="YPZ3_pPCP0002"
/db_xref="GeneID:8997192"
CDS 1109..1888
/locus_tag="YPZ3_pPCP0002"
/codon_start=1
/transl_table=11
/product="transposase/IS protein"
/protein_id="YP_003566128.1"
/db_xref="GI:294509195"
/db_xref="GeneID:8997192"
/translation="MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLE
HLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERN
ENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQR
GVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDA
ALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE"
misc_feature 1109..1885
/locus_tag="YPZ3_pPCP0002"
/note="transposase/IS protein; Provisional; Region:
PRK09183"
/db_xref="CDD:181681"
misc_feature 1367..>1669
/locus_tag="YPZ3_pPCP0002"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 1433..1456
/locus_tag="YPZ3_pPCP0002"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(1436..1459,1619..1621)
/locus_tag="YPZ3_pPCP0002"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 1607..1624
/locus_tag="YPZ3_pPCP0002"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene 3486..3857
/locus_tag="YPZ3_pPCP0003"
/db_xref="GeneID:8997193"
CDS 3486..3857
/locus_tag="YPZ3_pPCP0003"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003566129.1"
/db_xref="GI:294509196"
/db_xref="GeneID:8997193"
/translation="MSKKRRPQKRPRRRRFFHRLRPPDEHHKNRRSSQRWRNPTGLKD
TRRFPPEAPSCALLFRPCRLPDTSPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCT
NPPFSPTTAPYPVTIVLSPTR"
gene 4442..4780
/gene="pim"
/locus_tag="YPZ3_pPCP0004"
/db_xref="GeneID:8997194"
CDS 4442..4780
/gene="pim"
/locus_tag="YPZ3_pPCP0004"
/codon_start=1
/transl_table=11
/product="pesticin immunity protein"
/protein_id="YP_003566130.1"
/db_xref="GI:294509197"
/db_xref="GeneID:8997194"
/translation="MQNLELNTFGNSLSHGIYGKQTTFKQTEFTNIKSNTKKHIALIN
KDNSWMISLKILGIKRDEYTVCFEDFSLIRPPTYVAIHPLLIKKVKSGNFIVVKEIKK
SIPGCTVYYH"
gene complement(4815..5888)
/gene="pst"
/locus_tag="YPZ3_pPCP0005"
/db_xref="GeneID:8997195"
CDS complement(4815..5888)
/gene="pst"
/locus_tag="YPZ3_pPCP0005"
/codon_start=1
/transl_table=11
/product="pesticin"
/protein_id="YP_003566131.1"
/db_xref="GI:294509198"
/db_xref="GeneID:8997195"
/translation="MSDTMVVNGSGGVPAFLFSGSTLSSYRPNFEANSITIALPHYVD
LPGRSNFKLMYIMGFPIDTEMEKDSEYSNKIRQESKISKTEGTVSYEQKITVETGQEK
DGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRIVLADNTVINFDNISQLKEFL
RRSVNIVDHDIFSSNGFEGFNPTSHFPSNPSSDYFNSTGVTFGSGVDLGQRSKQDLLN
DGVPQYIADRLDGYYMLRGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFN
DANIGLRFSDLPLRTRTALVSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVD
GMSDRRKREGALVQKDIDSGLLK"
misc_feature complement(5391..5888)
/gene="pst"
/locus_tag="YPZ3_pPCP0005"
/note="Pesticin Translocation And Receptor Binding Domain;
Region: Pesticin_RB; cd12220"
/db_xref="CDD:240617"
misc_feature complement(5865..5888)
/gene="pst"
/locus_tag="YPZ3_pPCP0005"
/note="TonB box [polypeptide binding]; other site"
/db_xref="CDD:240617"
gene 6005..6421
/locus_tag="YPZ3_pPCP0006"
/db_xref="GeneID:8997196"
CDS 6005..6421
/locus_tag="YPZ3_pPCP0006"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003566132.1"
/db_xref="GI:294509199"
/db_xref="GeneID:8997196"
/translation="MKFHFCDLNHSYKNQEGKIRSRKTAPGNIRKKQKGDNVSKTKSG
RHRLSKTDKRLLAALVVAGYEERTARDLIQKHVYTLTQADLRHLVSEISNGVGQSQAY
DAIYQARRIRLARKYLSGKKPEGVEPREGQEREDLP"
gene 6664..7602
/gene="pla"
/locus_tag="YPZ3_pPCP0007"
/db_xref="GeneID:8997197"
CDS 6664..7602
/gene="pla"
/locus_tag="YPZ3_pPCP0007"
/codon_start=1
/transl_table=11
/product="plasminogen activator protease precursor"
/protein_id="YP_003566133.1"
/db_xref="GI:294509200"
/db_xref="GeneID:8997197"
/translation="MKKSSIVATIITILSGSANAASSQLIPNISPDSFTVAASTGMLS
GKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNM
DDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFS
WTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSD
WVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGG
TQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF"
misc_feature 6664..7599
/gene="pla"
/locus_tag="YPZ3_pPCP0007"
/note="outer membrane protease; Reviewed; Region:
PRK12580"
/db_xref="CDD:79055"
gene complement(8088..8429)
/locus_tag="YPZ3_pPCP0008"
/db_xref="GeneID:8997198"
CDS complement(8088..8429)
/locus_tag="YPZ3_pPCP0008"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003566134.1"
/db_xref="GI:294509201"
/db_xref="GeneID:8997198"
/translation="MVLFSQRFDDWLNEQEDALQEKVLADLKKLQVYGPELPRPYADT
VKGSRYKNMKELRVQFSGRPIRAFYAFDPIRRAIVLCAGDKSNDKRFYEKLVRIAEDE
FTAHLNTLESK"
misc_feature complement(8091..8429)
/locus_tag="YPZ3_pPCP0008"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4683"
/db_xref="CDD:227028"
CONTIG join(CP001596.1:1..9609)
//
