LOCUS NC_014483 5394884 bp DNA circular BCT 05-SEP-2012
DEFINITION Paenibacillus polymyxa E681 chromosome, complete genome.
ACCESSION NC_014483
VERSION NC_014483.1 GI:308066838
DBLINK Project: 53477
KEYWORDS .
SOURCE Paenibacillus polymyxa E681
ORGANISM Paenibacillus polymyxa E681
Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae;
Paenibacillus.
REFERENCE 1 (bases 1 to 5394884)
AUTHORS Kim,J.F., Jeong,H., Park,S.Y., Kim,S.B., Park,Y.K., Choi,S.K.,
Ryu,C.M., Hur,C.G., Ghim,S.Y., Oh,T.K., Kim,J.J., Park,C.S. and
Park,S.H.
TITLE Genome sequence of the polymyxin-producing plant-probiotic
rhizobacterium Paenibacillus polymyxa E681
JOURNAL J. Bacteriol. 192 (22), 6103-6104 (2010)
PUBMED 20851896
REFERENCE 2 (bases 1 to 5394884)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-SEP-2010) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5394884)
AUTHORS Jeong,H., Kim,J.F., Kim,S.-B., Lee,C., Park,S.-Y., Park,Y.-K.,
Ryu,C.-M., Moon,Y.H., Hur,C.-G., Park,C.S., Oh,T.K. and Park,S.-H.
TITLE Direct Submission
JOURNAL Submitted (14-OCT-2005) Lab of Microbial Genomics, Genome Research
Center, Korea Research Institute of Bioscience and Biotechnology
(KRIBB), Daejeon Yuseong PO Box 115, Yuseong-gu, Daejeon 305-600,
Republic of Korea
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP000154.
Bacteria available from Dr. Seung-Hwan Park (shpark@kribb.re.kr).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..5394884
/organism="Paenibacillus polymyxa E681"
/mol_type="genomic DNA"
/strain="E681"
/db_xref="taxon:349520"
gene 431..1786
/gene="dnaA"
/locus_tag="PPE_00001"
/db_xref="GeneID:9777680"
CDS 431..1786
/gene="dnaA"
/locus_tag="PPE_00001"
/note="TIGRFAMsMatches:TIGR00362; COGMatches:COG0593;
PfamMatches:PF00308; PrositeMatches:PS01008"
/codon_start=1
/transl_table=11
/product="chromosomal replication initiator protein dnaA"
/protein_id="YP_003868444.1"
/db_xref="GI:308066839"
/db_xref="GeneID:9777680"
/translation="MTSVDSHTSELWQQILSIIQTKLSKPSYDTWFKATKAAKLNDHS
IVISAPTTFAVEWLESRYTKLVGATVYEILGKQLEVKFVIEENKPAEVDLQQQPQQQP
VVHEEAVSHMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGKT
HLMHAIGHYILEHNPTSKVVYLSSEKFTNEFINAIRDNRGESFRNKYRNIDILLIDDI
QFIAGKESTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQ
PPDLETRIAILRKKARAENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQD
VTSHLAAEALKDIIPSSRPKMITIQDIQHQVGEFYNLRLEDFKARKRTKAVAFPRQIA
MYLSRELTDYSLPKIGEAFGGRDHTTVIHAHEKISKSIQVDQDLFKVINSLIEKIKNP
T"
misc_feature 452..1777
/gene="dnaA"
/locus_tag="PPE_00001"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 455..628
/gene="dnaA"
/locus_tag="PPE_00001"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 809..1243
/gene="dnaA"
/locus_tag="PPE_00001"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 887..910
/gene="dnaA"
/locus_tag="PPE_00001"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(890..913,1076..1078,1175..1177)
/gene="dnaA"
/locus_tag="PPE_00001"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 1064..1081
/gene="dnaA"
/locus_tag="PPE_00001"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 1214..1216
/gene="dnaA"
/locus_tag="PPE_00001"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1502..1771
/gene="dnaA"
/locus_tag="PPE_00001"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1571..1573,1595..1600,1619..1621,1637..1645,
1670..1684,1691..1693,1700..1705)
/gene="dnaA"
/locus_tag="PPE_00001"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 1973..3115
/gene="dnaN1"
/locus_tag="PPE_00002"
/db_xref="GeneID:9772761"
CDS 1973..3115
/gene="dnaN1"
/locus_tag="PPE_00002"
/EC_number="2.7.7.7"
/note="TIGRFAMsMatches:TIGR00663; COGMatches:COG0592;
PfamMatches:PF00712, PF02767, PF02768; go_process: DNA
replication (GO:0006260)"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_003868445.1"
/db_xref="GI:308066840"
/db_xref="GeneID:9772761"
/translation="MKISILKNVLNEAIQHVSKAISSRTTIPILSGIKLDVNHQGVTL
TASDTDISIQSFIPMEDGDQTVVQIEQPGSVVLPAKFFVEIIKKLPSQEIHMEVKDQF
QTFISSGATEIQIVGLDPEEFPVLPNIEENQVISVPGDLLKNMIKQTVFSISTHETTP
ILTGVLWNLAEGELKFVATDRHRLATRSAHLETSEGLRFSNVVIAGKTLNELSRIIPD
QNMLVDIVVADNQVLFKVDRVLFYSRILDGTYPDTSRIIPTSYKTELIVDTKSLSESI
DRAYLLSREEKTNIVKMQSLENGGLEISSSSSELGKVREEVTVSKFEGEPLKISFNSK
YMLDVLKVIDSEQLTIAFTGIMSPIILKPADSSNALYIILPYRTTN"
misc_feature 1973..3106
/gene="dnaN1"
/locus_tag="PPE_00002"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature 1973..3103
/gene="dnaN1"
/locus_tag="PPE_00002"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(2042..2044,2210..2212,2231..2233,2591..2593)
/gene="dnaN1"
/locus_tag="PPE_00002"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(2213..2215,2222..2224,2300..2302,2306..2308,
2813..2815,2912..2917)
/gene="dnaN1"
/locus_tag="PPE_00002"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(2507..2509,2513..2524,2966..2968,3092..3103)
/gene="dnaN1"
/locus_tag="PPE_00002"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(2507..2509,2513..2518,2738..2740,2846..2848,
2888..2893,2975..2977,3092..3103)
/gene="dnaN1"
/locus_tag="PPE_00002"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 3163..3381
/locus_tag="PPE_00003"
/db_xref="GeneID:9772762"
CDS 3163..3381
/locus_tag="PPE_00003"
/note="COGMatches:COG2501; PfamMatches:PF01479;
PrositeMatches:PS50889; go_fucntion: RNA binding
(GO:0003723)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868446.1"
/db_xref="GI:308066841"
/db_xref="GeneID:9772762"
/translation="MKPISIQTEYIKLDQFLKLADCVSTGGMAKALLQEGQVRVNGEL
EERRGRKLYPGDTVEVEDNGSFEVTAGA"
misc_feature 3193..>3351
/locus_tag="PPE_00003"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(3196..3198,3232..3237,3241..3246,3250..3255,
3262..3267,3271..3273,3292..3315,3319..3321)
/locus_tag="PPE_00003"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 3436..4551
/locus_tag="PPE_00004"
/db_xref="GeneID:9772763"
CDS 3436..4551
/locus_tag="PPE_00004"
/note="COGMatches:COG1195; PrositeMatches:PS00617,
PS00618"
/codon_start=1
/transl_table=11
/product="DNA repair protein RecF"
/protein_id="YP_003868447.1"
/db_xref="GI:308066842"
/db_xref="GeneID:9772763"
/translation="MFVNNIVLQQYRNYEQLELNEFGPVNLLIGQNAQGKTNLVEAIF
VLALTKSHRTSRDKELISFGATSTHLAADVDKKYGKIRLDLALSTQGKKAKINGLEQR
KLSDFIGSLNVVMFAPEDLEIVKGTPGVRRRFLDMEIGQVAPGYLYHLQQYQKVLVQR
NNLLKQAWGKDMASVQLMLEVWNEQLVEHGVKIVKKRKQFITKLQKWAQAIHEGIAGG
TEELKLTYVPSFSEPEEEDEAVLLERFMIKLSQMREQEIRRGMTLAGPHRDDLAFAIN
GREVHTYGSQGQQRTTALSLKLAEIELIHEEIGEYPVLLLDDVLSELDPYRQTQLIET
FQSKVQTFITATGVETLNAERLKDANIYHVHDGHVEH"
misc_feature 3436..4545
/locus_tag="PPE_00004"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature 3442..>3930
/locus_tag="PPE_00004"
/note="RecF is a recombinational DNA repair ATPase that
maintains replication in the presence of DNA damage. When
replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication...; Region: ABC_RecF;
cd03242"
/db_xref="CDD:73001"
misc_feature 3523..3546
/locus_tag="PPE_00004"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73001"
misc_feature order(3532..3537,3541..3549,3736..3738)
/locus_tag="PPE_00004"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73001"
misc_feature 3727..3738
/locus_tag="PPE_00004"
/note="Q-loop/lid; other site"
/db_xref="CDD:73001"
misc_feature <4210..4545
/locus_tag="PPE_00004"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 4285..4314
/locus_tag="PPE_00004"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 4372..4389
/locus_tag="PPE_00004"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 4396..4407
/locus_tag="PPE_00004"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 4462..4482
/locus_tag="PPE_00004"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 4568..4819
/locus_tag="PPE_00005"
/db_xref="GeneID:9772764"
CDS 4568..4819
/locus_tag="PPE_00005"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868448.1"
/db_xref="GI:308066843"
/db_xref="GeneID:9772764"
/translation="MYIHLGGEKIIRSSELVAIFDISIEKSSKISKQYVNHAQQQKHI
EMIGEEEAKSIVVTQNTVYYSPISSTTLKKRANQFVANA"
gene 4850..6760
/gene="gyrB"
/locus_tag="PPE_00006"
/db_xref="GeneID:9772765"
CDS 4850..6760
/gene="gyrB"
/locus_tag="PPE_00006"
/EC_number="5.99.1.3"
/note="TIGRFAMsMatches:TIGR01059; COGMatches:COG0187;
PfamMatches:PF02518, PF00204, PF01751, PF00986;
PrositeMatches:PS00177; go_fucntion: ATP binding
(GO:0005524), go_process: DNA topological change
(GO:0006265), go_process: DNA modification (GO:0006304)"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_003868449.1"
/db_xref="GI:308066844"
/db_xref="GeneID:9772765"
/translation="MSMNQPSYDAGEIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWE
VVDNSIDEALAGYCDSIQVVVHEDNSVTVTDNGRGIPVSEHAKMKKSALEVVMTVLHA
GGKFGGGGYKVSGGLHGVGVSVVNALSSKMIVHVKRDGHLYEQEYHRGAPQYDVRVIG
DTDETGTQTTFYPDDQIFTETTVYDYDTLQTRIRELAFLNKGIAISLTDERTGASDTF
HYEGGISEYVQFLNQKREALHEQPIYVEGSRDMIQVEVALQYNDSYTENIYSFANNIN
THEGGTHESGFKSALTRIINDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQF
EGQTKTKLGNSEVRGIVESLFAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARE
LTRRKSALEISSLPGKLADCSSKDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRG
KILNVEKARLDRILSSDEIRSMVTAMGTGIGDDFDIAKARYHKVIIMTDADVDGAHIR
TLLLTFFYRYMRKIIDAGYIYIAQPPLFKVERNKVVRYANSEAERDEIIREFGENAKY
NVQRYKGLGEMNATQLWETTMDPESRTMLQVTVSDAMLADTLFNTLMGDNVEPRRDFI
QEHAKYVKNLDF"
misc_feature 4850..6757
/gene="gyrB"
/locus_tag="PPE_00006"
/note="DNA gyrase subunit B; Validated; Region: gyrB;
PRK05644"
/db_xref="CDD:180181"
misc_feature 4961..>5113
/gene="gyrB"
/locus_tag="PPE_00006"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature 4991..4993
/gene="gyrB"
/locus_tag="PPE_00006"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(5078..5080,5084..5086)
/gene="gyrB"
/locus_tag="PPE_00006"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 5513..5986
/gene="gyrB"
/locus_tag="PPE_00006"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 5666..5668
/gene="gyrB"
/locus_tag="PPE_00006"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(5840..5842,5849..5854,5858..5860)
/gene="gyrB"
/locus_tag="PPE_00006"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(5858..5860,5864..5866)
/gene="gyrB"
/locus_tag="PPE_00006"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 6107..6448
/gene="gyrB"
/locus_tag="PPE_00006"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(6125..6130,6137..6139,6344..6346,6350..6352,
6356..6358)
/gene="gyrB"
/locus_tag="PPE_00006"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(6125..6127,6344..6346)
/gene="gyrB"
/locus_tag="PPE_00006"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 6533..6724
/gene="gyrB"
/locus_tag="PPE_00006"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene complement(6902..7729)
/locus_tag="PPE_00007"
/db_xref="GeneID:9772766"
CDS complement(6902..7729)
/locus_tag="PPE_00007"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868450.1"
/db_xref="GI:308066845"
/db_xref="GeneID:9772766"
/translation="MSIQRVSSKWTKTNAILPNPTLAAYVPETRLYTFDHLNEMLAVY
GTVYIKPDNGTYGKGVMRAERLTEPLPPTEEGIIEERTWYVLRYEVDTFTFESLEDLH
RVVSSRIRKRPYLIQRGIPLLQHEARPFDLRVLTQMNLRHQWETTLIVGRVAAPDKVV
TNHHSGGTTRFFNELVAPYMDVKEAVRLEQKLSKMGERVAWQLQKRYPRLREIGLDVG
LDQQNYPWILEVNTRPAIKVFSSLPNKSLYHKIFRYAVGYGRYSSSTGKPVRSKKKA"
misc_feature complement(6962..7705)
/locus_tag="PPE_00007"
/note="ATP-grasp domain; Region: ATP-grasp_4; cl03087"
/db_xref="CDD:207834"
gene 8196..10760
/gene="gyrA1"
/locus_tag="PPE_00008"
/db_xref="GeneID:9772767"
CDS 8196..10760
/gene="gyrA1"
/locus_tag="PPE_00008"
/EC_number="5.99.1.3"
/note="TIGRFAMsMatches:TIGR01063; COGMatches:COG0188;
PfamMatches:PF00521, PF03989; go_process: DNA topological
change (GO:0006265), go_fucntion: DNA topoisomerase
activity (GO:0003916)"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="YP_003868451.1"
/db_xref="GI:308066846"
/db_xref="GeneID:9772767"
/translation="MADQNNSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKP
VHRRILYAMSELGMSPDKPYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYM
LVDGHGNFGSVDGDMAAAMRYTEARLSKIAMEMLRDLNKETVDFMPNYDGEESEPVVL
PARYPNLLVNGVGGIAVGMATNIPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDF
PTAGYILGRSGIRQAYQTGRGSVTMRAKTTIEEIGNKARIIVHELPYQVNKARLVEKI
AELVRDKRIEGITDLRDESDRTGMRVVIELRRDVNPNVVLNNLFKHTAMQSNFGINML
AIVNNEPKILNLKDVLYHYLKHQVEVIRRRTEFDLKKAEARAHILEGLRIALDHLDEV
IALIRSSQTAEAAREGLIERFSLTLEQSQAILDMRLQRLTGLEREKIENEYNELIQKI
AEYREILANEHLVLNIISEELNELKERFADDRRTEITVGEESILDEDLIPREDVIITV
THTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYR
IKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPIEEFVEDSYLFFATQHGIIKKTP
LDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSMGRS
ATGVKGINLDESDAVIGMDIVDTSLDILIVTAKGYGKRTPVVDYRIQSRGGKGIKTIN
VTDKNGPVVGLKVVKTEEDLMIITASGTLIRTSMGEISTMGRNTQGVRLINIRDDDSV
ATVCRANKNEEQDELLEELLEDGEAGEGSSLSSVEPTLETNTEGAESNDPESSEGE"
misc_feature 8208..10604
/gene="gyrA1"
/locus_tag="PPE_00008"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:180128"
misc_feature 8286..9617
/gene="gyrA1"
/locus_tag="PPE_00008"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(8286..8369,8382..8531,8535..8591,8595..8666,
8673..8675)
/gene="gyrA1"
/locus_tag="PPE_00008"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 8562..8564
/gene="gyrA1"
/locus_tag="PPE_00008"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(9354..9362,9369..9380,9411..9416,9456..9506)
/gene="gyrA1"
/locus_tag="PPE_00008"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
misc_feature 9702..9845
/gene="gyrA1"
/locus_tag="PPE_00008"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 9852..10004
/gene="gyrA1"
/locus_tag="PPE_00008"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 10023..10157
/gene="gyrA1"
/locus_tag="PPE_00008"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 10164..10307
/gene="gyrA1"
/locus_tag="PPE_00008"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 10317..10460
/gene="gyrA1"
/locus_tag="PPE_00008"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 10467..10610
/gene="gyrA1"
/locus_tag="PPE_00008"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
gene 10977..12065
/locus_tag="PPE_00009"
/db_xref="GeneID:9772768"
CDS 10977..12065
/locus_tag="PPE_00009"
/note="COGMatches:COG2206; PfamMatches:PF01966"
/codon_start=1
/transl_table=11
/product="HD-GYP domain-containing protein"
/protein_id="YP_003868452.1"
/db_xref="GI:308066847"
/db_xref="GeneID:9772768"
/translation="MTTVPVSELKAGLRLQSDVFTEMGSLLLPKGRILLPRDLEILQA
FLIQQVEVGTDDLTKSSSESTTVRSGTSESQGPSLDGRDESEQFQDEYDKMVMLVKNA
FQSVLVSNLSIYELRGQLESLLVHIQRYNVMTYTPPAMVEVDYIFHNAVLTSLTSYSI
AQWIGLPQKDWMQVAFAGLLHDIGNAKMDPVILYKPSKLTWEEQEEIRRHTTLGYQLL
KNVKAINEGVRLAALQHHEKVDGTGYPLRLKGEQIHIYAKIVGVADVFHAMTLEKTYR
PAQSPYLVLEQIKSESFGKLDPSVVQVFIHKLTQFNNGTKVRLNDNRTGEIIFADRDH
PTRPLIQVDGEIINLMLQRELYIECIVT"
misc_feature <11406..11999
/locus_tag="PPE_00009"
/note="c-di-GMP phosphodiesterase class II (HD-GYP domain)
[Signal transduction mechanisms]; Region: COG2206"
/db_xref="CDD:32388"
misc_feature 11406..11840
/locus_tag="PPE_00009"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(11421..11423,11517..11522,11766..11768)
/locus_tag="PPE_00009"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 11520..11522
/locus_tag="PPE_00009"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene 12412..13917
/locus_tag="PPE_00010"
/db_xref="GeneID:9772769"
rRNA 12412..13917
/locus_tag="PPE_00010"
/product="16S ribosomal RNA"
/db_xref="GeneID:9772769"
gene 14300..17225
/locus_tag="PPE_00011"
/db_xref="GeneID:9772770"
rRNA 14300..17225
/locus_tag="PPE_00011"
/product="23S ribosomal RNA"
/db_xref="GeneID:9772770"
gene 17380..17496
/locus_tag="PPE_00012"
/db_xref="GeneID:9772771"
rRNA 17380..17496
/locus_tag="PPE_00012"
/product="5S ribosomal RNA"
/db_xref="GeneID:9772771"
gene 17731..18150
/locus_tag="PPE_00013"
/db_xref="GeneID:9772772"
CDS 17731..18150
/locus_tag="PPE_00013"
/note="PrositeMatches:PS00013"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868453.1"
/db_xref="GI:308066848"
/db_xref="GeneID:9772772"
/translation="MRRNKWLALLVLFSVAVAILTGCVEEEPSWTSFEGAANEKTFPV
PKEASKTDRASSNSDMDYVRYALPALKESDSLPAPYLEEIAAWGWTEEPNLSTSNQKV
FQKNKHMVHLSVHDGSFTVLVPKDRKAVVKSKSVDLN"
gene 19453..19638
/locus_tag="PPE_00014"
/db_xref="GeneID:9772773"
CDS 19453..19638
/locus_tag="PPE_00014"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868454.1"
/db_xref="GI:308066849"
/db_xref="GeneID:9772773"
/translation="MHNQGGHRCIICGQHKHEGIFIVSEFICDTCEAEMVQTDATDAK
YHFFIDQLKQIWVQKNA"
misc_feature 19474..19611
/locus_tag="PPE_00014"
/note="Inhibitor of sigma-G Gin; Region: Gin; pfam10764"
/db_xref="CDD:204552"
gene 19783..21366
/locus_tag="PPE_00015"
/db_xref="GeneID:9772774"
CDS 19783..21366
/locus_tag="PPE_00015"
/note="COGMatches:COG1982; PfamMatches:PF01276, PF03711;
go_fucntion: catalytic activity (GO:0003824)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868455.1"
/db_xref="GI:308066850"
/db_xref="GeneID:9772774"
/translation="MMGKKAVHAPLMEALIRYRTQGNASFHVPGHKNGQVYEHENIAS
LLQEVMSIDATEITGLDDLHHPEDVIREGQELAAKCFGAEESFWLIGGSTVGNLAMIL
TVCTEPGDLLLVQRNVHKSVLNGLMLSGANAVFLDPEIDTLSGLAVAPTTDTIKAALK
TYPSAKGVLLTLPNYYGMGHDLTATAKACHAAHVPLLVDEAHGAHYGLHPRLPASALS
CGADVVIQSTHKMLPAMTMGAMLHVQGERIHRELLRQRLAMVQSSSPSYPLMASLDLA
RWYIEAYGTDAFTVGLAAADAFRKGLEQFPRFRLLEPTQQVLEGEDAHKGISEVLERA
EEGISGYSSQDPFKLVLYDTWGILDGFGLKHELETYGCVPEMSDEKHVVLLFTLGSTP
KDASHLLQALAHINNDMRFKETAGEPGATEKEPQRLELDFSTWNNDRMKGYSSPVPFG
LRPISPDQMETVPVEESAGRVAAEMIIPYPPGIPLLYTGETITEAIALRMSRLRELGA
KWHGIADEGMLTIRVFRLQ"
misc_feature 19810..21357
/locus_tag="PPE_00015"
/note="Arginine/lysine/ornithine decarboxylases [Amino
acid transport and metabolism]; Region: LdcC; COG1982"
/db_xref="CDD:32165"
misc_feature 19810..20694
/locus_tag="PPE_00015"
/note="Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the...; Region: AAT_I;
cl00321"
/db_xref="CDD:213094"
misc_feature order(20059..20064,20071..20073,20293..20295,20377..20379,
20386..20388,20461..20463,20470..20472)
/locus_tag="PPE_00015"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 20470..20472
/locus_tag="PPE_00015"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 21470..22117
/gene="tmk"
/locus_tag="PPE_00016"
/db_xref="GeneID:9772775"
CDS 21470..22117
/gene="tmk"
/locus_tag="PPE_00016"
/EC_number="2.7.4.9"
/note="TIGRFAMsMatches:TIGR00041; COGMatches:COG0125;
PfamMatches:PF02223; PrositeMatches:PS01331; go_process:
dTTP biosynthesis (GO:0006235)"
/codon_start=1
/transl_table=11
/product="thymidylate kinase (dTMP kinase)"
/protein_id="YP_003868456.1"
/db_xref="GI:308066851"
/db_xref="GeneID:9772775"
/translation="MNRKGIFITLEGGDGSGKTTMIQRLAKFMEEEGYPVITTREPGG
IEISEKIRSIILDPAHTSMDARTEALLYAAARRQHLVEKVKPAIEQGAIVLCDRFVDS
SLVYQGFARGIGIEEVASINRFAVDDWEPDATFYLDIEPELGLARINASRGAEMDRLD
MESISFHHKVREAYLELARKFPERITIVDASPAPEQVEQVLKDLLKKRFVQNFSI"
misc_feature 21479..22096
/gene="tmk"
/locus_tag="PPE_00016"
/note="thymidylate kinase; Validated; Region: tmk;
PRK00698"
/db_xref="CDD:179089"
misc_feature 21485..22090
/gene="tmk"
/locus_tag="PPE_00016"
/note="Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor. TMPK
represents the rate-limiting step...; Region: TMPK;
cd01672"
/db_xref="CDD:30190"
misc_feature order(21524..21526,21683..21685,21695..21697,21758..21763,
21785..21787,21920..21922)
/gene="tmk"
/locus_tag="PPE_00016"
/note="TMP-binding site; other site"
/db_xref="CDD:30190"
misc_feature order(21527..21529,21908..21910,22037..22039)
/gene="tmk"
/locus_tag="PPE_00016"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30190"
gene 22192..22521
/locus_tag="PPE_00017"
/db_xref="GeneID:9772776"
CDS 22192..22521
/locus_tag="PPE_00017"
/note="COGMatches:COG3870; PfamMatches:PF06153"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868457.1"
/db_xref="GI:308066852"
/db_xref="GeneID:9772776"
/translation="MKLIIAIVQDKDSNRLSSGLVKANFRATKLASTGGFLRAGNTTF
MIGVDDNQVDSLMNVIRSSCKVREQLVTPVTPMSGTTDSYLPLPVEVQVGGATVFVMP
VDRFEHF"
misc_feature 22192..22518
/locus_tag="PPE_00017"
/note="Protein of unknown function (DUF970); Region:
DUF970; pfam06153"
/db_xref="CDD:114848"
gene 22719..23162
/locus_tag="PPE_00018"
/db_xref="GeneID:9772777"
CDS 22719..23162
/locus_tag="PPE_00018"
/note="COGMatches:COG1728; PfamMatches:PF03885"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868458.1"
/db_xref="GI:308066853"
/db_xref="GeneID:9772777"
/translation="MKINPGYRPLQSTLSTNEMSAKPIQPKSFSDVMQQNGEQASQEE
LNRRFKEIQMQGDRLARSMTIRELKAYKMLVKRFLEDTVRRGVSMKDTKGWDRRGRSK
RYKLIDEVDELLLKMADELLETEQGKIELLQGVGEIRGLLINLSF"
misc_feature 22719..23153
/locus_tag="PPE_00018"
/note="Protein of unknown function (DUF327); Region:
DUF327; pfam03885"
/db_xref="CDD:190781"
gene 23324..24319
/locus_tag="PPE_00019"
/db_xref="GeneID:9772778"
CDS 23324..24319
/locus_tag="PPE_00019"
/note="COGMatches:COG0470"
/codon_start=1
/transl_table=11
/product="DNA replication ATPase"
/protein_id="YP_003868459.1"
/db_xref="GI:308066854"
/db_xref="GeneID:9772778"
/translation="MSFQHIMGQDVAKKMLQSALRNHTVNHAYVFSGPPGSGQMNMAQ
IFAKALFCERQTDDACGECLSCRKVEHGNHPDLHIVEPDGATIKIDQIRGLQRIFSYK
SESSNPKVYIIRQADTMTVQAANSLLKFLEEPQIPVVGILISENGQALLPTIQSRTQQ
VPFHALQPEVMMQALIGEGYTAGLVRSVVHIASGLESCREILQQNWFAEIRNVVLQLV
KESMSRGSSSIILAQQKIFKTGLSEHLDILFHLFHLWFKDMLHFRYGRHESIVFIDHL
ESVSKLAITRSTEQWVSYMDLAANCRKKLRFHVNGQLCVEQLLIGLSDTSGFITG"
misc_feature 23348..24289
/locus_tag="PPE_00019"
/note="DNA polymerase III subunit delta'; Validated;
Region: PRK08058"
/db_xref="CDD:181214"
misc_feature <23621..>23794
/locus_tag="PPE_00019"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
gene 24458..25258
/locus_tag="PPE_00020"
/db_xref="GeneID:9772779"
CDS 24458..25258
/locus_tag="PPE_00020"
/note="COGMatches:COG1774; PfamMatches:PF04468"
/codon_start=1
/transl_table=11
/product="stage 0 sporulation protein yaaT"
/protein_id="YP_003868460.1"
/db_xref="GI:308066855"
/db_xref="GeneID:9772779"
/translation="MYSVVGVRFKKAGKTYYFDPLDLPVEKENCVIVETARGIEYGKV
VVGKKEVNDSDVVLPLKKVIRIAGDDDALVVEENKLAAKDAFGTCLNKIKDHGLKMKL
VDVEFTFDRNKIIFYFTAEGRVDFRELVKDLASIFRTRIELRQIGVRDEAKMLGGIGP
CGRILCCSSWLGDFEPVSIKMAKDQSLSLNPTKISGLCGRLMCCLKFEHDNYESMREE
LPQVGKMVITSLGEGKVVGVNAGHRTVHVQLFEISKVKELPMDDVVVK"
misc_feature 24458..25252
/locus_tag="PPE_00020"
/note="Uncharacterized homolog of PSP1 [Function unknown];
Region: COG1774"
/db_xref="CDD:31960"
gene 25286..25660
/locus_tag="PPE_00021"
/db_xref="GeneID:9772780"
CDS 25286..25660
/locus_tag="PPE_00021"
/note="COGMatches:COG4467; PfamMatches:PF06156"
/codon_start=1
/transl_table=11
/product="initiation-control protein yabA"
/protein_id="YP_003868461.1"
/db_xref="GI:308066856"
/db_xref="GeneID:9772780"
/translation="MDKLNVFARIHEMETQMGQLHSDLGELKLAVKELLEENQRLTIE
NEQVRRMLKRETSGEEKMANKPKLPPPIVIKDEGQTGEVVGEGYDNLARLYHEGFHIC
NVYYGHLRTEGDCLFCLSFLNK"
misc_feature 25286..25657
/locus_tag="PPE_00021"
/note="DNA replication intiation control protein YabA;
Reviewed; Region: PRK13169"
/db_xref="CDD:183876"
gene 25750..26505
/locus_tag="PPE_00022"
/db_xref="GeneID:9772781"
CDS 25750..26505
/locus_tag="PPE_00022"
/note="COGMatches:COG4123"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868462.1"
/db_xref="GI:308066857"
/db_xref="GeneID:9772781"
/translation="MDENEKKSERIDDLLSHNLRIIQSDEVFSFSMDAVLLARFAGIP
QRGKILDLCTGNGVVPLLLTTRTKASIEGIEIQPRLADMARRSVSLNGLESAIQIREG
DLRELVHITGHGVYDAITVNPPYMPLNGSDIKLNPHQAIARHEVNCTLEEVIQASTRL
VRNGGKVSMVHRPQRLGEIITLMRNHSLEPKRIRFVHPRVHMEANMVLVEALRDGKPE
VRLLPPLIVYQENGNYTQEIRDIYGEVSKGDSV"
misc_feature 25762..26475
/locus_tag="PPE_00022"
/note="Predicted O-methyltransferase [General function
prediction only]; Region: COG4123"
/db_xref="CDD:33880"
misc_feature 25891..26250
/locus_tag="PPE_00022"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(25903..25923,25972..25977,26053..26061,26113..26115)
/locus_tag="PPE_00022"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 26502..27383
/locus_tag="PPE_00023"
/db_xref="GeneID:9772782"
CDS 26502..27383
/locus_tag="PPE_00023"
/note="COGMatches:COG0313; PfamMatches:PF00590;
PrositeMatches:PS01296; go_process: metabolism
(GO:0008152)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868463.1"
/db_xref="GI:308066858"
/db_xref="GeneID:9772782"
/translation="MKAAVQKSFSTSEEERGKLYLVATPIGNLDDMTFRAINTLKSCS
IIAAEDTRQTRKLLTHFEITPDMLFSYHEHNKAASGPELIRYIIEGKNLALVSDAGLP
AISDPGSDLVKLALEAEISVIPIPGANAALSALIASGLDTERFTFAGFPPREKKDLEK
LLLSFQVSHGTIIFYESPHRIVKTLMVLKETLGSRKVVLARELTKLHEEWVRGTVEQC
LAKLEENAPIGEYCLVVEGKDEEEEEQERQAWWQSLSLESHVAHYEAEGLTRKDAMKR
TATDRSISKRDVYNALL"
misc_feature 26550..27380
/locus_tag="PPE_00023"
/note="Predicted methyltransferases [General function
prediction only]; Region: COG0313"
/db_xref="CDD:30661"
misc_feature 26556..27212
/locus_tag="PPE_00023"
/note="Ribosomal RNA small subunit methyltransferase I,
also known as rRNA (cytidine-2'-O-)-methyltransferase
RsmI; Region: RsmI; cd11648"
/db_xref="CDD:212507"
misc_feature order(26577..26579,26796..26804,26811..26816,26886..26891,
27024..27026,27099..27101,27105..27110,27189..27197)
/locus_tag="PPE_00023"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212507"
misc_feature order(26595..26606,26610..26612,26802..26819,26826..26831,
26835..26840,26871..26873,26877..26888,26892..26897,
26904..26909,26934..26948)
/locus_tag="PPE_00023"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212507"
gene complement(27508..27762)
/locus_tag="PPE_00024"
/db_xref="GeneID:9772783"
CDS complement(27508..27762)
/locus_tag="PPE_00024"
/note="COGMatches:COG2002; PfamMatches:PF04014"
/codon_start=1
/transl_table=11
/product="transition state regulatory protein abrB"
/protein_id="YP_003868464.1"
/db_xref="GI:308066859"
/db_xref="GeneID:9772783"
/translation="MMKSTGIVRKVDELGRVVIPIELRRTLGIGEKDALEIYVDGERI
MLKKYEPACIFCGNAENVIYFKGKIVCQDCISEIPTPVTN"
misc_feature complement(27607..27738)
/locus_tag="PPE_00024"
/note="SpoVT / AbrB like domain; Region: SpoVT_AbrB;
smart00966"
/db_xref="CDD:198034"
gene 28094..29377
/locus_tag="PPE_00025"
/db_xref="GeneID:9772784"
CDS 28094..29377
/locus_tag="PPE_00025"
/note="COGMatches:COG1078; PfamMatches:PF01966"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868465.1"
/db_xref="GI:308066860"
/db_xref="GeneID:9772784"
/translation="MHQPLSEEKVFKDPVHNYIHVQDTVIWRLINTPEFQRLRRIRQL
GTSYLTFHGAEHSRFSHSLGVYEITRRIISQFERGNFPDWPKEERLVALCAALLHDVG
HGPFSHSIEEAFHMNHEDWTCRIVLGDTKINAVLRQVDDKLPQKVAAVIAKTYDNPIV
VNLVTSPLDADRMDYLLRDAHSTGVNYGTIDLDRILRLLRPHNGRIVVKESGMHAVED
YLMSRYQMYWQIYFHPVTRSSEILLRKIFKRAKELFKNGYEFGFLLDPLPDLLKGELT
VEQYLMLDESLIQTVFSQWKREKDEILSDLSSRFMDRRLYKYVEIENMDTDTIASIRE
ALREAGLHPEYDFEIDFPTDLPYDVFRQGGSTDNQILLLGRQGEVSEISEVSEIVRSI
SGIHRGKYHMYFPQNKLNAVKDRLPAEIRNYFVKE"
misc_feature 28109..29182
/locus_tag="PPE_00025"
/note="HD superfamily phosphohydrolases [General function
prediction only]; Region: COG1078"
/db_xref="CDD:31276"
misc_feature 28259..28657
/locus_tag="PPE_00025"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(28274..28276,28388..28393,28604..28606)
/locus_tag="PPE_00025"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 28391..28393
/locus_tag="PPE_00025"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene 29420..30190
/locus_tag="PPE_00026"
/db_xref="GeneID:9772785"
CDS 29420..30190
/locus_tag="PPE_00026"
/EC_number="3.1.21.-"
/note="COGMatches:COG0084; PfamMatches:PF01026;
PrositeMatches:PS01137, PS01090, PS01091"
/codon_start=1
/transl_table=11
/product="deoxyribonuclease yabD"
/protein_id="YP_003868466.1"
/db_xref="GI:308066861"
/db_xref="GeneID:9772785"
/translation="MDLFDTHTHLDAPQFDEDREEVIARAVESGVTRMINIGFNRETI
PSTMKLAETYDFIYAAVGWHPQDAITMQEGDLEWIASLCSHKKVVAIGEIGLDYYWDT
SPKDVQHRVFRNQIGLARELKMPIVIHNRDAHEDIVKILREEKASEIGGVMHSFSGSW
ETAKMVLDMGFHLSFGGPITFKNAKQPKEVLAQVPLDRLLIETDAPYLTPHPFRGKRN
ESAHVRLVAEAAAQIKGITVEELVSITTRNALERFDIQ"
misc_feature 29426..30178
/locus_tag="PPE_00026"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:30053"
misc_feature order(29438..29440,29444..29446,29804..29806,29879..29881,
30029..30031)
/locus_tag="PPE_00026"
/note="active site"
/db_xref="CDD:30053"
gene 30945..32093
/locus_tag="PPE_00027"
/db_xref="GeneID:9772786"
CDS 30945..32093
/locus_tag="PPE_00027"
/note="COGMatches:COG3583; PfamMatches:PF03990, PF07501,
PF06725; PrositeMatches:PS51109; go_fucntion: hydrolase
activity (GO:0016787), go_component: outer membrane
(GO:0019867)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868467.1"
/db_xref="GI:308066862"
/db_xref="GeneID:9772786"
/translation="MGIFQKKDTHESRSSSMSYVLRWKQENVRQAALVAIFLIALTIM
ISILMYTQSKKQVFFVIDGKASAVETRESKLQDLLSEHSISLQPHDTVSMPLNGAVQD
GDRVVIKRANQVKVSSGNETKKLYTTENTVEGAIRTSGYKLSSTDKVYPALDASVSSN
MDIKIVRVKKQQVEQKKQVPYQVIKTADPSLYKGDNRVIQSGKSGVVVQHVQKVYHDG
KLVSKQLVNKEVAQNRVDKVIAVGTKKKPVVLAASVGPNDAVKATTVSSGSAVRKAGV
NFKYSKVLQNVSMTAYSSQEPGIGTRTASGARVTEGRTIAVDPSVIPIGWWVYIEGVG
FRRAEDTGGAIKGHKIDVYYESLSRANQFGRKHGKTVYVIGPVKPEIN"
misc_feature 31110..31235
/locus_tag="PPE_00027"
/note="Domain of unknown function (DUF348); Region:
DUF348; pfam03990"
/db_xref="CDD:202844"
misc_feature 31281..31409
/locus_tag="PPE_00027"
/note="Domain of unknown function (DUF348); Region:
DUF348; pfam03990"
/db_xref="CDD:202844"
misc_feature <31506..31679
/locus_tag="PPE_00027"
/note="G5 domain; Region: G5; pfam07501"
/db_xref="CDD:203655"
misc_feature 31767..32042
/locus_tag="PPE_00027"
/note="3D domain; Region: 3D; cl01439"
/db_xref="CDD:207412"
gene 32240..32785
/locus_tag="PPE_00028"
/db_xref="GeneID:9772787"
CDS 32240..32785
/locus_tag="PPE_00028"
/note="COGMatches:COG1658; PfamMatches:PF01751;
go_process: DNA modification (GO:0006304)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868468.1"
/db_xref="GI:308066863"
/db_xref="GeneID:9772787"
/translation="MIKEVIVVEGRDDTVAIRRAVEADTIETGGSAINKMTLRKIALA
QERRGVIILTDPDHAGERIRKIIASKVPGCKQAFIPEAEATRKGDIGVENASPEAIRH
ALARVHTTVEGADPLIEWADLIDAGLITHPNAAARRMALGNVLGIGYCNGKQLHKRLS
VFQISREEFAGALAQIESEGL"
misc_feature 32243..32761
/locus_tag="PPE_00028"
/note="ribonuclease M5; Region: 5S_RNA_mat_M5; TIGR00334"
/db_xref="CDD:161823"
misc_feature 32243..32476
/locus_tag="PPE_00028"
/note="TOPRIM_ RNase M5_like: The topoisomerase-primase
(TOPRIM) nucleotidyl transferase/hydrolase domain found in
Ribonuclease M5: (RNase M5) and other small primase-like
proteins from bacteria and archaea. RNase M5 catalyzes
the maturation of 5S rRNA in low...; Region:
TOPRIM_RNase_M5_like; cd01027"
/db_xref="CDD:173777"
misc_feature order(32264..32269,32276..32278,32402..32404,32408..32410,
32414..32416)
/locus_tag="PPE_00028"
/note="putative active site [active]"
/db_xref="CDD:173777"
misc_feature order(32264..32266,32402..32404)
/locus_tag="PPE_00028"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:173777"
misc_feature 32504..32761
/locus_tag="PPE_00028"
/note="Domain of unknown function (DUF4093); Region:
DUF4093; pfam13331"
/db_xref="CDD:205511"
gene 32793..33677
/gene="ksgA"
/locus_tag="PPE_00029"
/db_xref="GeneID:9772788"
CDS 32793..33677
/gene="ksgA"
/locus_tag="PPE_00029"
/EC_number="2.1.1.-"
/note="TIGRFAMsMatches:TIGR00755; COGMatches:COG0030;
PfamMatches:PF00398; PrositeMatches:PS01131; go_process:
rRNA modification (GO:0000154)"
/codon_start=1
/transl_table=11
/product="dimethyladenosine transferase"
/protein_id="YP_003868469.1"
/db_xref="GI:308066864"
/db_xref="GeneID:9772788"
/translation="MTGIQDIATPRRTKDIIQRHGFSFKKSLGQNFLIDQNILNKIVN
AAGLDETKGALEIGPGIGALTEKLAQSAKAVTAVEIDQRLLPILEEVLAPYEHVKVRH
GDVLKLDLREVFAADFADVSKVSVVANLPYYVTTPILMRLLEDKLPLENIVVMIQKEV
AERMAASPGTKDYGSLSIAVQYYSEPELVCIVPNTVFIPQPNVESAVIRLRVREAPPV
EVVDEKHFFEVVHAAFAQRRKTISNNLKSRFFTKENRDTLEPLLQQAGIEPSRRGETL
SIEEFARLSAVLLEAGIS"
misc_feature 32955..33224
/gene="ksgA"
/locus_tag="PPE_00029"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(32961..32981,33027..33032,33099..33107,33177..33179)
/gene="ksgA"
/locus_tag="PPE_00029"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 33733..34629
/locus_tag="PPE_00030"
/db_xref="GeneID:9772789"
CDS 33733..34629
/locus_tag="PPE_00030"
/note="PfamMatches:PF05582"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868470.1"
/db_xref="GI:308066865"
/db_xref="GeneID:9772789"
/translation="MSLGDLVVRKSYGGDVTFRVEDIQRDKAIIKGIEFRLLADSPVN
DLVRVPADQISGKTQQAHIKADESLNLLQQARQQQAARSQAALVGDWSDPIESTYFEM
PGKVLHLDGDPGYLKKCLSLYEQLRVPAEGHHVHESAMADTLYRLLPRIRPDIVVITG
HDGVLKQPQPYDLYSLKSYKNSQNFVAAIQVARQYERHLDSLTIVAGACQSHFEALLR
AGANFASSPGRILIHALDPVYVAAKAAFTSIRDTVNMGDLFHQTISGSRGVGGIETRG
SYRIGLPKLENLSTLKVTPSAI"
misc_feature 33733..34584
/locus_tag="PPE_00030"
/note="YabG peptidase U57; Region: Peptidase_U57; cl05250"
/db_xref="CDD:164072"
gene 34831..35112
/locus_tag="PPE_00031"
/db_xref="GeneID:9772790"
CDS 34831..35112
/locus_tag="PPE_00031"
/note="COGMatches:COG4466; PfamMatches:PF06257"
/codon_start=1
/transl_table=11
/product="Veg protein"
/protein_id="YP_003868471.1"
/db_xref="GI:308066866"
/db_xref="GeneID:9772790"
/translation="MAKNTLLEIKRSLDAHVGQKILLRANGGRRKTVERTGVLEETYP
SVFIVKLDQEQQTFKRVSYSYADILTESVEVSVYDPDSHTSVVEYFETP"
misc_feature 34837..35061
/locus_tag="PPE_00031"
/note="Protein of unknown function (DUF1021); Region:
DUF1021; pfam06257"
/db_xref="CDD:148082"
gene 35275..35454
/locus_tag="PPE_00032"
/db_xref="GeneID:9772791"
CDS 35275..35454
/locus_tag="PPE_00032"
/note="PfamMatches:PF00269; PrositeMatches:PS00304;
go_process: DNA topological change (GO:0006265)"
/codon_start=1
/transl_table=11
/product="SspF protein"
/protein_id="YP_003868472.1"
/db_xref="GI:308066867"
/db_xref="GeneID:9772791"
/translation="MSRRRRSVMSEELKYELAKDLGFYDTVKEEGWGGIKAKDAGNMV
KRAIQLAEQAASRKS"
misc_feature 35305..35433
/locus_tag="PPE_00032"
/note="Small, acid-soluble spore proteins, alpha/beta
type; Region: SASP; pfam00269"
/db_xref="CDD:144014"
gene 35600..36454
/gene="ispE"
/locus_tag="PPE_00033"
/db_xref="GeneID:9772792"
CDS 35600..36454
/gene="ispE"
/locus_tag="PPE_00033"
/EC_number="2.7.1.148"
/note="TIGRFAMsMatches:TIGR00154; COGMatches:COG1947;
PfamMatches:PF00288; go_process: phosphorylation
(GO:0016310)"
/codon_start=1
/transl_table=11
/product="4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase"
/protein_id="YP_003868473.1"
/db_xref="GI:308066868"
/db_xref="GeneID:9772792"
/translation="MKIYEKAPAKINLMLDVLRKRDDGYHEVEMIMTMVDLSDRLTMS
ELPRDTIIISSQAGYIPLDEKNLAFQAARLIKERYNVSTGVHIHLDKHIPVAAGLAGG
SSDAAAALRGLNKLWKLGISDAELRVLGAELGSDVPFCITGGTALASGRGELLKPLPN
PPQCWVILAKPPINVSTAEVYGRVKADQITHHPSARQMEHAIRNASFTDVCNALGNVL
EDVTLKLYPEVEHLKSSMIRLGADGVLMSGSGPTVFGLVSKEAKVPRIYNGLRGFCKD
VYAVRLLT"
misc_feature 35600..36448
/gene="ispE"
/locus_tag="PPE_00033"
/note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional; Region: ipk; PRK00128"
/db_xref="CDD:178884"
misc_feature 35855..36031
/gene="ispE"
/locus_tag="PPE_00033"
/note="GHMP kinases N terminal domain; Region:
GHMP_kinases_N; pfam00288"
/db_xref="CDD:201132"
misc_feature 36191..36427
/gene="ispE"
/locus_tag="PPE_00033"
/note="GHMP kinases C terminal; Region: GHMP_kinases_C;
pfam08544"
/db_xref="CDD:203975"
gene 36636..37463
/locus_tag="PPE_00034"
/db_xref="GeneID:9772793"
CDS 36636..37463
/locus_tag="PPE_00034"
/note="COGMatches:COG0503; PfamMatches:PF00156;
go_process: nucleoside metabolism (GO:0009116)"
/codon_start=1
/transl_table=11
/product="Pur operon repressor"
/protein_id="YP_003868474.1"
/db_xref="GI:308066869"
/db_xref="GeneID:9772793"
/translation="MKKLKRSSRLVEMTQFLLSRPHTLVPLTHFADRYGAAKSSISED
LAIIKEVFEDEGTGELLTLAGAAGGVKLIPRLSKQHALAFANDLCAQLEQPDRILPGG
YLYLSDLLGQPAMMNEAGKIFATAFANRQIDVVMTVETKGIPLAYATGAQLNLPVVLV
RRDHQVTEGSAVSINYVSGSQKSLHTMSLSRRAMREKSRVLIVDDFMKAGGTIQGMVD
LLAEFDAEVAGVGVLVESGEVENEERLLHDYISLANLTAVDSRSKQITVKLGNYFDE"
misc_feature 36639..37457
/locus_tag="PPE_00034"
/note="pur operon repressor; Provisional; Region:
PRK09213"
/db_xref="CDD:181702"
misc_feature 36648..36857
/locus_tag="PPE_00034"
/note="Bacterial purine repressor, N-terminal; Region:
PuR_N; pfam09182"
/db_xref="CDD:150015"
misc_feature 36990..>37310
/locus_tag="PPE_00034"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(37050..37052,37056..37058,37245..37253,37257..37271)
/locus_tag="PPE_00034"
/note="active site"
/db_xref="CDD:206754"
gene 37588..37926
/locus_tag="PPE_00035"
/db_xref="GeneID:9772794"
CDS 37588..37926
/locus_tag="PPE_00035"
/note="COGMatches:COG2088; PfamMatches:PF04026;
go_process: sporulation (GO:0030435)"
/codon_start=1
/transl_table=11
/product="stage V sporulation protein G"
/protein_id="YP_003868475.1"
/db_xref="GI:308066870"
/db_xref="GeneID:9772794"
/translation="MWNVYTKSYLEKGGETHMQITDVRLRRVNSEGRMKAIASITIDN
EFVVHDIRVIDGNNGMFVAMPSKRTPDGEFRDIAHPISSGTREKIQAAVLTEYERAAV
DEEVAIEEGA"
misc_feature 37639..37923
/locus_tag="PPE_00035"
/note="regulatory protein SpoVG; Reviewed; Region:
PRK13259"
/db_xref="CDD:183925"
gene 38272..39669
/gene="glmU"
/locus_tag="PPE_00036"
/db_xref="GeneID:9772795"
CDS 38272..39669
/gene="glmU"
/locus_tag="PPE_00036"
/EC_number="2.3.1.157"
/EC_number="2.7.7.23"
/note="TIGRFAMsMatches:TIGR01173; COGMatches:COG1207;
PfamMatches:PF00483, PF00132; go_process: biosynthesis
(GO:0009058)"
/codon_start=1
/transl_table=11
/product="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase"
/protein_id="YP_003868476.1"
/db_xref="GI:308066871"
/db_xref="GeneID:9772795"
/translation="MLERLAVILAAGQGKRMKSKLYKVLHPVCGKPMVGHVLDTVREI
GVSRSVVVVGHGAEAVQSYLGPSAEYALQAEQLGTGHAVKQAKDLLGQEKGTTIVICG
DTPLITAETLEGLVQLHESRGAAATILTAELDDPKGYGRVIRDASGAVLKIVEQKDCS
PEEDDVQEINTGTYCFDNAKLFAALDKVTNTNAQQEYYLTDVIGILHGEGEQVEAYLT
DDVSESIGVNDRVALSVAEGYMRERIVRKHMLNGVTVIDPSSTYIGSEVVIGSDTVLH
PNTWLHGQTQIGEDCVIGPQAEIQNTIIHSGATVKHSVLNEAEVGSSTSVGPFAYLRP
GAKLGEHVKIGDFVEVKNATIGDHSKVSHLSYVGDAKVGTNVNIGCGAITVNYDGYNK
SITEIEDDAFIGSNVNLIAPIKIGKGAYVVAGSTVTHAVPDNDLAIARPRQENKAGYA
DKIRAHAKAKKKRSE"
misc_feature 38278..39618
/gene="glmU"
/locus_tag="PPE_00036"
/note="bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional; Region: glmU; PRK14354"
/db_xref="CDD:184643"
misc_feature 38287..38970
/gene="glmU"
/locus_tag="PPE_00036"
/note="N-terminal domain of bacterial GlmU; Region:
GT2_GlmU_N_bac; cd02540"
/db_xref="CDD:133020"
misc_feature order(38296..38304,38425..38427,38506..38508,38515..38517,
38572..38574,38578..38580)
/gene="glmU"
/locus_tag="PPE_00036"
/note="Substrate binding site; other site"
/db_xref="CDD:133020"
misc_feature order(38578..38580,38953..38955)
/gene="glmU"
/locus_tag="PPE_00036"
/note="Mg++ binding site; other site"
/db_xref="CDD:133020"
misc_feature 39025..39600
/gene="glmU"
/locus_tag="PPE_00036"
/note="N-acetyl-glucosamine-1-phosphate uridyltransferase
(GlmU), C-terminal left-handed beta-helix (LbH)
acetyltransferase domain: GlmU is also known as
UDP-N-acetylglucosamine pyrophosphorylase. It is a
bifunctional bacterial enzyme that catalyzes two...;
Region: LbH_GlmU_C; cd03353"
/db_xref="CDD:100044"
misc_feature order(39268..39270,39316..39318,39322..39324,39358..39360,
39367..39369,39400..39411,39424..39432,39445..39447,
39475..39477,39481..39486,39535..39540,39589..39591)
/gene="glmU"
/locus_tag="PPE_00036"
/note="active site"
/db_xref="CDD:100044"
misc_feature order(39268..39270,39316..39318,39322..39324,39358..39360,
39367..39369,39400..39408,39427..39429,39445..39447)
/gene="glmU"
/locus_tag="PPE_00036"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100044"
misc_feature order(39409..39411,39424..39426,39430..39432,39481..39486,
39535..39540,39589..39591)
/gene="glmU"
/locus_tag="PPE_00036"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100044"
gene 39729..40682
/locus_tag="PPE_00037"
/db_xref="GeneID:9772796"
CDS 39729..40682
/locus_tag="PPE_00037"
/EC_number="2.7.6.1"
/note="COGMatches:COG0462; PfamMatches:PF00156;
PrositeMatches:PS00103, PS00114; go_process: nucleoside
metabolism (GO:0009116)"
/codon_start=1
/transl_table=11
/product="ribose-phosphate pyrophosphokinase (RPPK)"
/protein_id="YP_003868477.1"
/db_xref="GI:308066872"
/db_xref="GeneID:9772796"
/translation="MTYCDSKLKIFTCNSNPKLAHQIADYIGIPMGESHTTSFSDGEI
QVKLSESVRGCHVYIVQSTCLPVNDNLMELLVMIDALKRASAKSINVVMPYYGYARQD
RKARSRDPITAKLVANLIEKAGAHRVISMDLHAMQIQGFFDIPVDHMLGAPILAQYFR
SKQIENPIVVSPDHGGVVRARKLADFLSAPLAIIDKRRPEPNVSEVMNIIGNIEGKTA
ILIDDIIDTAGTIVLGANALKEGGVKDVYACCTHAVLSGPAMERLENSPLKEVVVTDT
IPIVHPNPTSKLKVLSVAPLMGEAIIRVHEELSISKLFEIE"
misc_feature 39750..40673
/locus_tag="PPE_00037"
/note="ribose-phosphate pyrophosphokinase; Provisional;
Region: PRK01259"
/db_xref="CDD:179265"
misc_feature 39750..40100
/locus_tag="PPE_00037"
/note="N-terminal domain of ribose phosphate
pyrophosphokinase; Region: Pribosyltran_N; pfam13793"
/db_xref="CDD:205966"
misc_feature 40182..40556
/locus_tag="PPE_00037"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(40245..40247,40251..40253,40392..40400,40404..40418,
40488..40490)
/locus_tag="PPE_00037"
/note="active site"
/db_xref="CDD:206754"
gene complement(40751..41020)
/locus_tag="PPE_00038"
/db_xref="GeneID:9772797"
CDS complement(40751..41020)
/locus_tag="PPE_00038"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868478.1"
/db_xref="GI:308066873"
/db_xref="GeneID:9772797"
/translation="MHFGATGIEFCKILVLNRKVRAGMLNQGDILLYDSHFLYHLKHS
VPVQIYDGNVHIQIGIVARFNEHFVEIEDTLYNRQRFTFISRPGF"
gene 41149..41709
/gene="pth"
/locus_tag="PPE_00039"
/db_xref="GeneID:9772798"
CDS 41149..41709
/gene="pth"
/locus_tag="PPE_00039"
/EC_number="3.1.1.29"
/note="TIGRFAMsMatches:TIGR00447; COGMatches:COG0193;
PfamMatches:PF01195; PrositeMatches:PS01195, PS01196;
go_process: protein biosynthesis (GO:0006412)"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase"
/protein_id="YP_003868479.1"
/db_xref="GI:308066874"
/db_xref="GeneID:9772798"
/translation="MKWIVGLGNPGPQYEKTRHNVGFMALDALASRHNIQINQSKCKA
LIGEGHIGGVKTVLIKPMTYMNLSGESLRAYMDYYKADMEDLVVVYDDLDTEVGKIRL
RYQGSAGGHNGIKSIIQHTGTQSFNRIRMGISRPEPGHAIVDYVLGTFPKKEKDLLAG
MIEDTCNALEYSLSHPFERTMAEFNK"
misc_feature 41158..41658
/gene="pth"
/locus_tag="PPE_00039"
/note="Peptidyl-tRNA hydrolase (PTH) is a monomeric
protein that cleaves the ester bond linking the nascent
peptide and tRNA when peptidyl-tRNA is released
prematurely from the ribosome. This ensures the recycling
of peptidyl-tRNAs into tRNAs produced through...; Region:
PTH; cd00462"
/db_xref="CDD:73208"
misc_feature order(41173..41175,41203..41205,41338..41343,41419..41421,
41479..41481)
/gene="pth"
/locus_tag="PPE_00039"
/note="putative active site [active]"
/db_xref="CDD:73208"
misc_feature 41203..41205
/gene="pth"
/locus_tag="PPE_00039"
/note="catalytic residue [active]"
/db_xref="CDD:73208"
gene 41796..42026
/locus_tag="PPE_00040"
/db_xref="GeneID:9772799"
CDS 41796..42026
/locus_tag="PPE_00040"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868480.1"
/db_xref="GI:308066875"
/db_xref="GeneID:9772799"
/translation="MIVNYVCRHCRTFLGRIDSAAITEERLGFHSLTPAERRDIIAYN
SGGEVTVKVICEHCSQALENNPELSLLVNPLQ"
misc_feature 41796..41999
/locus_tag="PPE_00040"
/note="Protein of unknown function (DUF2757); Region:
DUF2757; pfam10955"
/db_xref="CDD:151402"
gene 42161..45688
/gene="mfd"
/locus_tag="PPE_00041"
/db_xref="GeneID:9772800"
CDS 42161..45688
/gene="mfd"
/locus_tag="PPE_00041"
/note="TIGRFAMsMatches:TIGR00580; COGMatches:COG1197;
PfamMatches:PF02559, PF04851, PF00270, PF00271, PF03461;
go_process: regulation of transcription, DNA-dependent
(GO:0006355), go_fucntion: ATP binding (GO:0005524)"
/codon_start=1
/transl_table=11
/product="transcription-repair coupling factor"
/protein_id="YP_003868481.1"
/db_xref="GI:308066876"
/db_xref="GeneID:9772800"
/translation="MLQALIQAFTKDADYASIAAGISSGMKEQLISGLSGSSRQVLMA
ALAEDTGRPLMVMTHNMFAAQKIADDLQEALSPDQVLLYPANELVAAEAAISSPETLS
QRIDVLIRCAQGFRGIVVVPFSGVRRLLPIPETWREARIELKEGETIQLEAFLLHMVE
MGYQRVERVESRGEMSVRGGIIDFYPMTTRWGYRVELFDDEIDSIRKFDPQDQRSVEK
VQDVTVTPCKEVIANNQRMDQAADAAAILLEEQLGKMTDRQAKQHLKEEIHREIELLR
EHVYFDEIYKYISLLYPERKTLADYMPADTILIIDEPARMLETAKQLERDESEWNLHL
LQNGKTLPQLELSDDADNLLYNRRFQTLFLSIFLRQVPHTQPQNILNFICRGMQDFHG
QMNVLKAEMDRWRKAGTQVMMLASGDERLDRMRRVLEDYGIDEPTMAIGNLQSGFEMP
SIHLAVITEGEMFSQKQRKARKQGRHVDNAERIKSYSELKVGDYVVHQNHGIGKYMGI
GTLEVGGIHKDYMHVLYAGGDKLSVPIEQIDLIQKYVGSEDKEPKIYKLGGNEWTRVK
SKVRSSVQDIADDLIKLYAERQSAPGFAFEKDSPEQQEFEDMFPYDETRDQIRAIEEI
KKDMEQSRPMDRLLCGDVGYGKTEVAIRAAFKSAIEGKQVAVLVPTTILAQQHYETFR
ERFSGYPFNIQVLSRFRTRKEQNETIKGVRQGTVDIVIGTHRLLSQDLVFKDLGMLIV
DEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV
QTYVVEHSQTLVREAIEREMARGGQVYYLYNRVQGIQEMAAEINALVPGAKVGVGHGQ
MSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDADKMGLSQLYQLRGR
VGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRDLSIRGAGNLLG
AEQHGFIASVGFDLYSQMLAEEINKRKVSVLGEEDQSNRNWSTSIDLGVDAYLPGDYI
YDSIQKIEIYKKVAAVSTFDEASELEDELVDRFGDLPEAVRHLLAVARLKVYGRMYGI
ESMVQRDDNIVLKFHEGRQQAVQTARLAEIGNRFERRVQFEQGTSMSARIKGKGLNDP
QLLELLEQFLSSLKEAFTLKEELQNATTK"
misc_feature 42233..45466
/gene="mfd"
/locus_tag="PPE_00041"
/note="Transcription-repair coupling factor (superfamily
II helicase) [DNA replication, recombination, and repair /
Transcription]; Region: Mfd; COG1197"
/db_xref="CDD:31390"
misc_feature 43622..43915
/gene="mfd"
/locus_tag="PPE_00041"
/note="CarD-like/TRCF domain; Region: CarD_TRCF;
smart01058"
/db_xref="CDD:198126"
misc_feature 44060..44470
/gene="mfd"
/locus_tag="PPE_00041"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 44087..44101
/gene="mfd"
/locus_tag="PPE_00041"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 44381..44392
/gene="mfd"
/locus_tag="PPE_00041"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 44549..44938
/gene="mfd"
/locus_tag="PPE_00041"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(44645..44656,44720..44725,44798..44806)
/gene="mfd"
/locus_tag="PPE_00041"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(44822..44824,44888..44890,44900..44902,44909..44911)
/gene="mfd"
/locus_tag="PPE_00041"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 45212..45472
/gene="mfd"
/locus_tag="PPE_00041"
/note="This domain is found in proteins necessary for
strand-specific repair in DNA such as TRCF in Escherichia
coli; Region: TRCF; smart00982"
/db_xref="CDD:198050"
gene 45672..46790
/locus_tag="PPE_00042"
/db_xref="GeneID:9772801"
CDS 45672..46790
/locus_tag="PPE_00042"
/note="COGMatches:COG0760; PfamMatches:PF00639;
PrositeMatches:PS00013, PS50198, PS00211; go_fucntion:
isomerase activity (GO:0016853)"
/codon_start=1
/transl_table=11
/product="Parvulin-like peptidyl-prolyl isomerase"
/protein_id="YP_003868482.1"
/db_xref="GI:308066877"
/db_xref="GeneID:9772801"
/translation="MPQLNKRKPWRMLSLGMAALLAISVLAACTKQADENKVKDEPKD
NSKVVVTYKGGTITENEFNQEISMMKFLYPEYEAALASDQVREQIVKQEVVYKLLAAK
ADDKAKEQGAKQGNEQLEQYKKSVGDDKFKTFLSDKKLTEQGVKDYFTRVMTVINSET
NKVTDDQLKQEFEKNKDQFTTATVRHVLINFQDPKTKKQRKKEDALKLAKEVKAKLDG
GADFATIAKKYSEDPGSASNGGLYENASVAQWVPAFKEAAETQPINKIGEPVETEYGY
HVIKVESRNEPTFDKLKDNEKSALKNKLAGESIQNFTENDLAKLDLKINLPKVPATQE
KSGATSGAGSTTTPGATTNGTGDAKAGTAKDGATNEGK"
misc_feature <45921..46580
/locus_tag="PPE_00042"
/note="peptidylprolyl isomerase; Provisional; Region:
prsA; PRK00059"
/db_xref="CDD:178832"
misc_feature 46221..46523
/locus_tag="PPE_00042"
/note="PPIC-type PPIASE domain; Region: Rotamase_3;
pfam13616"
/db_xref="CDD:205794"
gene 46958..47500
/locus_tag="PPE_00043"
/db_xref="GeneID:9772802"
CDS 46958..47500
/locus_tag="PPE_00043"
/note="COGMatches:COG2002; PfamMatches:PF04014"
/codon_start=1
/transl_table=11
/product="stage V sporulation protein T"
/protein_id="YP_003868483.1"
/db_xref="GI:308066878"
/db_xref="GeneID:9772802"
/translation="MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEV
ILKKYSPIGELGDFAKEYAESLFESTGHITMITDRDTIITVAGGSKKDFLDKPIGSII
EGSMDNRKTVLETASGSYELTRDHEETLSSFVAAPIVSGGDPIGSVVLLNKDENVKMS
EMEIKMAETAAGFLGKQMEQ"
misc_feature 46961..47494
/locus_tag="PPE_00043"
/note="stage V sporulation protein T; Region: spore_V_T;
TIGR02851"
/db_xref="CDD:131898"
misc_feature 46979..47107
/locus_tag="PPE_00043"
/note="looped-hinge helix DNA binding domain, AbrB family;
Region: lp_hng_hel_AbrB; TIGR01439"
/db_xref="CDD:200102"
gene 47642..49300
/locus_tag="PPE_00044"
/db_xref="GeneID:9772803"
CDS 47642..49300
/locus_tag="PPE_00044"
/note="COGMatches:COG2244; PfamMatches:PF01943;
go_component: membrane (GO:0016020)"
/codon_start=1
/transl_table=11
/product="membrane protein"
/protein_id="YP_003868484.1"
/db_xref="GI:308066879"
/db_xref="GeneID:9772803"
/translation="MQENRAASRLLRGAVILTLAAVASKLIGTVQKIPLQNIGGDGVF
GIYNTVYPFYTLFITIAAAGFPAAISKFVAEFEAVGNRAAGQRVARVSSLVLGVFGLI
LGVLMYTCAPLIGQWIDNAHVIPSVRAAAFAFLFVPVMAGLRGYFQGLQNMLPTAISQ
VTEQAIRVSVMIMLLLLMLSQGAGADMIAAGAVFGSAAGGAAGLVVMLLYWRNHRKRL
RRQGTVMATVQAQTGELHPAESNGALLKALLRYALPVCLGALAVPLISLVDTFTVPRL
LKQEGLDDTAVMVAFGVYNRGLPLVQLVMMFATTLSALFIPSLAEARVTGGTELARRQ
CEQSLRWFWLLGLAAATGLIVLAVPVNVMLYADDTGSEVMRWMALTAVGGTLSIISAA
LLQGLGAVRAPALAMLAAAVAKALLNWLLVPQLGTAGAAIAGAVAYLLAAVINIVLLA
RLVGLRGSWSASVLKPAALLIALAGAAGAAMWGTSAVLGALGWAAGGRATAAAESLLG
VAAGAVVFVIGLARLRLITEAELVAVPKLGRPLAAVLRRLRVLA"
misc_feature 47669..48610
/locus_tag="PPE_00044"
/note="MatE; Region: MatE; cl10513"
/db_xref="CDD:209159"
gene 49418..50917
/locus_tag="PPE_00045"
/db_xref="GeneID:9772804"
CDS 49418..50917
/locus_tag="PPE_00045"
/note="COGMatches:COG3956; PfamMatches:PF00590, PF03819;
go_process: metabolism (GO:0008152)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868485.1"
/db_xref="GI:308066880"
/db_xref="GeneID:9772804"
/translation="MSVTLTVVGLGSGDPDQLTIGILNKMRGASALYLRTKEHPAVQV
LNEFEVAFESFDEVYETKESFPEVYEEITSQLITMAAKAADGSEIVYAVPGHPMVAEA
AVQLLKERCPAQGIELNILGGESFLDEAFVRLGFDPIEGFQLLDAGTLDASWLQPQLH
TLIGQVYDTFTASDVKLCLMERYPDDYEVYVGHALGVEGEEAVHKVPLYELDRVEGYG
NLSLVYIPRSEDEALKRRSFDRLHEIVDILRSPEGCPWDREQTHQSIRKNLIEETYEV
IETIDEDDPEHMKEELGDLLLQILLHAQMEEEVGTFNVYDVIQGLNDKLIFRHPHVFG
DNQANDAEEALQNWEQMKAEEKRLKGTTAADPSVLDGVPRDLPALMKSYKLQKKAAKV
GFNWDSIEGVFDKLDEEVAELKEAVREGHAVKAQLLELGDVLFVAVNAARFMGVDPEE
ALSATNRKFVARFQYIEQKLREQGRRPEDSSVDEMETYWQEAKKLLGKA"
misc_feature 49418..50896
/locus_tag="PPE_00045"
/note="Protein containing tetrapyrrole methyltransferase
domain and MazG-like (predicted pyrophosphatase) domain
[General function prediction only]; Region: COG3956"
/db_xref="CDD:33737"
misc_feature 49427..50098
/locus_tag="PPE_00045"
/note="N-terminal S-AdoMet dependent methylase domain of
Bacillus subtilis YabN and related proteins; Region:
YabN_N; cd11723"
/db_xref="CDD:212509"
misc_feature order(49451..49453,49697..49705,49712..49717,49790..49795,
49907..49909,49991..49993,49997..50002,50075..50083)
/locus_tag="PPE_00045"
/note="putative SAM binding site [chemical binding]; other
site"
/db_xref="CDD:212509"
misc_feature order(49469..49480,49484..49486,49703..49720,49730..49735,
49739..49744,49775..49777,49781..49792,49796..49801,
49808..49813,49847..49861)
/locus_tag="PPE_00045"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:212509"
misc_feature 50132..50473
/locus_tag="PPE_00045"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) N-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs; Region:
NTP-PPase_MazG_Nterm; cd11528"
/db_xref="CDD:212135"
misc_feature order(50135..50140,50147..50149,50201..50206,50213..50215,
50222..50227,50234..50239,50246..50248,50255..50257,
50270..50272,50279..50284,50291..50308,50312..50314,
50321..50323,50348..50350,50357..50371,50375..50383,
50387..50392)
/locus_tag="PPE_00045"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212135"
misc_feature order(50231..50233,50240..50242,50288..50290,50297..50299)
/locus_tag="PPE_00045"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212135"
misc_feature 50546..50896
/locus_tag="PPE_00045"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) C-terminal tandem-domain of MazG proteins from
Escherichia coli and bacterial homologs'; Region:
NTP-PPase_MazG_Cterm; cd11529"
/db_xref="CDD:212136"
misc_feature order(50546..50554,50558..50563,50570..50572,50582..50584,
50591..50599,50633..50638,50654..50659,50690..50698,
50705..50713,50717..50722,50726..50728,50747..50755,
50762..50764,50768..50797,50804..50809,50816..50818,
50861..50863,50870..50872,50882..50884)
/locus_tag="PPE_00045"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212136"
misc_feature order(50597..50605,50630..50632,50642..50644,50651..50653,
50687..50689,50696..50698,50702..50704,50711..50713)
/locus_tag="PPE_00045"
/note="active site"
/db_xref="CDD:212136"
misc_feature order(50639..50644,50651..50653,50696..50698,50702..50704,
50711..50713)
/locus_tag="PPE_00045"
/note="putative chemical substrate binding site [chemical
binding]; other site"
/db_xref="CDD:212136"
misc_feature order(50642..50644,50651..50653,50702..50704,50711..50713)
/locus_tag="PPE_00045"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212136"
gene 51250..51522
/locus_tag="PPE_00046"
/db_xref="GeneID:9772805"
CDS 51250..51522
/locus_tag="PPE_00046"
/note="COGMatches:COG0776; PfamMatches:PF00216;
PrositeMatches:PS00045; go_fucntion: DNA binding
(GO:0003677)"
/codon_start=1
/transl_table=11
/product="DNA-binding protein HU (DNA-binding protein II)"
/protein_id="YP_003868486.1"
/db_xref="GI:308066881"
/db_xref="GeneID:9772805"
/translation="MNKTDLINNISSKSGLSKRDVEAVLNGVLGEITDALASGDKVQL
IGFGTFETRKRSSRTGRNPQTGNTIEIPESTVPAFKAGNKLKEAVN"
misc_feature 51253..51513
/locus_tag="PPE_00046"
/note="Integration host factor (IHF) and HU are small
heterodimeric members of the DNABII protein family that
bind and bend DNA, functioning as architectural factors in
many cellular processes including transcription,
site-specific recombination, and...; Region: HU_IHF;
cd00591"
/db_xref="CDD:29683"
misc_feature order(51253..51258,51265..51267,51274..51276,51286..51288,
51328..51330,51337..51342,51349..51354,51364..51378,
51385..51390,51403..51405,51469..51474,51484..51486,
51490..51492,51511..51513)
/locus_tag="PPE_00046"
/note="IHF dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29683"
misc_feature order(51253..51261,51325..51327,51370..51372,51376..51378,
51382..51387,51394..51396,51406..51408,51412..51417,
51421..51423,51430..51441,51469..51471,51481..51483,
51487..51489,51496..51498)
/locus_tag="PPE_00046"
/note="IHF - DNA interface [nucleotide binding]; other
site"
/db_xref="CDD:29683"
gene 51522..51800
/locus_tag="PPE_00047"
/db_xref="GeneID:9772806"
CDS 51522..51800
/locus_tag="PPE_00047"
/note="COGMatches:COG1188; PfamMatches:PF01479;
PrositeMatches:PS50889; go_fucntion: RNA binding
(GO:0003723)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868487.1"
/db_xref="GI:308066882"
/db_xref="GeneID:9772806"
/translation="MRLDKFLKVSRLIKRRTVAKDVSEQGRVLVNGREAKPSSAVKVG
DEITVQFGQKLVTVRVERLADTTRKDEAAGMYTLVKEEPIARDNGLNW"
misc_feature 51522..51707
/locus_tag="PPE_00047"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(51525..51527,51561..51566,51570..51575,51579..51584,
51591..51596,51600..51602,51621..51626,51627..51641,
51645..51647)
/locus_tag="PPE_00047"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 51862..52263
/locus_tag="PPE_00048"
/db_xref="GeneID:9772807"
CDS 51862..52263
/locus_tag="PPE_00048"
/note="PfamMatches:PF07873"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868488.1"
/db_xref="GI:308066883"
/db_xref="GeneID:9772807"
/translation="MLFFFRWRDFVHHMLINSKNGSKSYGPLHKLRTEGGVHAMIEQG
KSKHHDLRMQSRKQLDISGVSNVESFDSEEFLLQTELGHLTIRGQHLHIKNLSLEEGL
LSIEGLITSLVYLEPGAPAKNGKSLFGKIFK"
misc_feature 52006..52260
/locus_tag="PPE_00048"
/note="YabP family; Region: YabP; cl06766"
/db_xref="CDD:208537"
gene 52260..52838
/locus_tag="PPE_00049"
/db_xref="GeneID:9772808"
CDS 52260..52838
/locus_tag="PPE_00049"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868489.1"
/db_xref="GI:308066884"
/db_xref="GeneID:9772808"
/translation="MNPYTQWLTLTWMLLSGIAMGVVFDSYRVLSIRFHFARWSVHML
DVLYWVASALFIFRVLYASNRGELRFYVFLGLLLGVWLYFWAFSVTTQRFVVMLLEIV
RRLTLIVNSILRILIVLPVLALYRLLRKLVGWTWALIVFLGRMLIYILMPVWKPILWL
IGPLKARWKTPELLVKLGIRLKNTAKRWFGRR"
misc_feature 52293..52523
/locus_tag="PPE_00049"
/note="Spore cortex protein YabQ (Spore_YabQ); Region:
Spore_YabQ; pfam09578"
/db_xref="CDD:204269"
gene 52843..53172
/locus_tag="PPE_00050"
/db_xref="GeneID:9772809"
CDS 52843..53172
/locus_tag="PPE_00050"
/note="PfamMatches:PF04977; go_process: cell cycle
(GO:0007049)"
/codon_start=1
/transl_table=11
/product="septum formation initiator"
/protein_id="YP_003868490.1"
/db_xref="GI:308066885"
/db_xref="GeneID:9772809"
/translation="MRNSSVDRHSSSTSKSNAGGRRRIMIWLLSLAAFGSWAIFTFFS
QGMIMADRSEQLTQKEKQKQAATQTEQQLQTEVNRLKDPEYIGEIARSKYGLYKPEET
PIIGDQK"
misc_feature <53071..53157
/locus_tag="PPE_00050"
/note="Septum formation initiator; Region: DivIC; cl11433"
/db_xref="CDD:209318"
gene 53296..53820
/locus_tag="PPE_00051"
/db_xref="GeneID:9772810"
CDS 53296..53820
/locus_tag="PPE_00051"
/note="COGMatches:COG1098; PfamMatches:PF00575;
PrositeMatches:PS50126; go_fucntion: RNA binding
(GO:0003723)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868491.1"
/db_xref="GI:308066886"
/db_xref="GeneID:9772810"
/translation="MAIEVGTKLEGKVTGITHFGAFVDLSGGVTGLVHISEIADNYVK
DVNDHLKINDVVMVKVINVDKDGKIGLSIKQTIDKPASEARPPRAPRPERTGGPGGGD
RFGGGGSGPSQGRGGGGGGFNRDRGGRSFKPAPGKPSFEDKMSRFLKDSEERISSLKK
NTEGKRGGRGAKRV"
misc_feature 53296..53814
/locus_tag="PPE_00051"
/note="hypothetical protein; Provisional; Region:
PRK08582"
/db_xref="CDD:181488"
misc_feature 53311..53517
/locus_tag="PPE_00051"
/note="S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1)
domain. RPS1 is a component of the small ribosomal subunit
thought to be involved in the recognition and binding of
mRNA's during translation initiation. The bacterial RPS1
domain architecture consists of...; Region:
S1_RPS1_repeat_hs4; cd05692"
/db_xref="CDD:88447"
misc_feature order(53335..53337,53359..53361,53389..53391,53395..53397)
/locus_tag="PPE_00051"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88447"
gene complement(53817..54128)
/locus_tag="PPE_00052"
/db_xref="GeneID:9772811"
CDS complement(53817..54128)
/locus_tag="PPE_00052"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868492.1"
/db_xref="GI:308066887"
/db_xref="GeneID:9772811"
/translation="MTLSMSSIPMPRLAICTEDRRKTVGVCRTIMSSRQKKHPLSSIE
ALFFFIKIVNLINAVRLTTGFSADSRCLSHLLSVERKKTVAVSRLYGFPCMIDTVVKV
N"
gene 54326..56833
/locus_tag="PPE_00053"
/db_xref="GeneID:9772812"
CDS 54326..56833
/locus_tag="PPE_00053"
/EC_number="3.1.3.16"
/note="COGMatches:COG2208; PfamMatches:PF07228;
go_fucntion: phosphoprotein phosphatase activity
(GO:0004721)"
/codon_start=1
/transl_table=11
/product="stage II sporulation protein E"
/protein_id="YP_003868493.1"
/db_xref="GI:308066888"
/db_xref="GeneID:9772812"
/translation="MMEKWNVVHFPGLKSRKSKSKERTEGWSSRLKKRLVSHKVVQWV
TAQRWMLLLSAMGVLLGRATILDELSPFALAYFAVITFLRRDLMLPVAVSVVLGSLLA
PYPSLFMIGGELLVFYLLYRGLQTFDRLELSYAPLMVFLSVFMVNLFNAVMAPTFTWY
ELIIVGTDAVLSFMLTLVFTQAIPLFTYRKKTSQLKNEEILCLIILLASVMTGAVGWT
VHSLSVDHVLSRYLVLVFALVGGASLGASVGVITGLILSLANMSAIVQMSLLAFAGLL
AGMLREGKKGAVALGMLLGSSILTIYLDGTGDVLTSTWESCAAILLFLMTPKSFFKAV
STYVPGTQDHAKSQHEYAKRVRDLTAERVTKFSRVFSQLSRSFHQISASESTKSDGEI
EHFMNAVAEGTCASCFKCEQCWDGKFMQTHQYMTEMMSAIEDSPDLEPEQIPPQWSKA
CAKTGAVLQVMKQQYSLYQHNMQWKRQVYDSRQLVADQLSGVSQIMEDLAREIQREGQ
TMHRQEEQIREALDRLGLSIQSIEIINLDAGQVEIEIVHAYTRGFDECRKIIAPLLSD
ILDEHIAVMRETEADRRQGLATVMFGSAKTYEIATGVASAAKGGDFFSGDSYSMMELG
NGTFAVSLSDGMGNGERAQQESSAALNILEELLQSGMDEKLAIKSVNSVLMLRSPEEM
YATVDMALIDQYTAQTTFMKIGSTPSFIKRGDEVIPVSASNLPIGIIQDIEIDLVSLQ
LQPGDILIMITDGIYDSPGYAVNKEIWMKRMIQEIESEDPQQLADCLLERVIRYQQNQ
IYDDMTVVVSKIDHFRPEWATLHVPGMRWLERPRTVS"
misc_feature 54494..56758
/locus_tag="PPE_00053"
/note="stage II sporulation protein E; Region: spore_II_E;
TIGR02865"
/db_xref="CDD:163048"
misc_feature 56201..56758
/locus_tag="PPE_00053"
/note="Stage II sporulation protein E (SpoIIE); Region:
SpoIIE; pfam07228"
/db_xref="CDD:203597"
gene 56960..57709
/locus_tag="PPE_00054"
/db_xref="GeneID:9772813"
CDS 56960..57709
/locus_tag="PPE_00054"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868494.1"
/db_xref="GI:308066889"
/db_xref="GeneID:9772813"
/translation="MKQILIITDGCSNVGVSPVMAAAQALREGITVNVAGVIDYGTIG
ELGSAEIQEIAKAGGGFSQIVGTKQLAQTMQMMTRKTVVQTIQQAVNRELTHILGEGG
AKHIGELPPAKRAQVVQVMDELTETSTLEIALLIDASASMKPKLPAVEDSIRDLLLSL
QSRSGHSRISVFHFPGGKMGEDAVMDIGWTSELNQIKSIFGRLRMKGATPTGPAILQV
IDYYRYVTLGEQKDLEESYGKGEGMLGDYVV"
misc_feature 57347..>57628
/locus_tag="PPE_00054"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cd00198"
/db_xref="CDD:29222"
misc_feature order(57368..57370,57584..57586)
/locus_tag="PPE_00054"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:29222"
gene 57693..58631
/locus_tag="PPE_00055"
/db_xref="GeneID:9772814"
CDS 57693..58631
/locus_tag="PPE_00055"
/EC_number="2.7.11.1"
/note="COGMatches:COG0515; PrositeMatches:PS00107,
PS50011"
/codon_start=1
/transl_table=11
/product="serine/threonine protein kinase"
/protein_id="YP_003868495.1"
/db_xref="GI:308066890"
/db_xref="GeneID:9772814"
/translation="MTTSSDPVLAPGTVIKGKWKRSSYVIQRLLGRGANGTVYLVKEA
QADRQFALKMGKNTLDLQSEINVLTTLQSQGTQAALQRNGNPSFLFEVDDVVLRSGEI
PFYVMRYVKGDPLHRFVAAKGSEWYGVAGTGILNRLADLHQAGWVFGDLKPQNILVNA
YGEAELIDYGGVSLAGRSVKQFTEWYDRGFWNAGSRNADSQYDLFAFALLTIHILESE
SLKAAASRLPQLRNTAELTVIIRRSRVLRPYAEWLLGAVRGEYSDTRAAARSWSRLAS
AHVRQSSVKKGNPRWLGYAFTVSLLLLAGALWIALR"
misc_feature 57780..58397
/locus_tag="PPE_00055"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature order(57780..57794,57804..57806,57843..57845,57849..57851,
57960..57962,58011..58022,58032..58034,58038..58040,
58140..58142,58146..58148,58152..58157,58161..58163,
58194..58196,58203..58205,58257..58259,58260..58262)
/locus_tag="PPE_00055"
/note="active site"
/db_xref="CDD:173623"
misc_feature order(57780..57794,57804..57806,57843..57845,57849..57851,
57960..57962,58011..58022,58032..58034,58140..58142,
58146..58148,58152..58157,58161..58163,58194..58196)
/locus_tag="PPE_00055"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:173623"
misc_feature order(57792..57794,58032..58034,58038..58040,58140..58142,
58146..58148,58152..58154,58203..58205,58257..58259,
58260..58262)
/locus_tag="PPE_00055"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:173623"
misc_feature order(58191..58211,58257..58259,58260..58262)
/locus_tag="PPE_00055"
/note="activation loop (A-loop); other site"
/db_xref="CDD:173623"
gene 58698..60146
/locus_tag="PPE_00056"
/db_xref="GeneID:9772815"
CDS 58698..60146
/locus_tag="PPE_00056"
/EC_number="6.3.4.-"
/note="COGMatches:COG0037; PfamMatches:PF01171"
/codon_start=1
/transl_table=11
/product="tRNA(Ile)-lysidine synthase"
/protein_id="YP_003868496.1"
/db_xref="GI:308066891"
/db_xref="GeneID:9772815"
/translation="MGTTKPTGVVQGVLALARDHSLWSPGDRIVVAVSGGPDSVALLH
ILHEISVIHMPLQLVCAHVHHGFRPEESDAEAEEVRNIARKLELPFEMTRVDVPAYMK
ESGKGPQEAARELRYNFLHDMATKWEAQHIAMAHHGDDQAETVLLHLLRGSGPAGLAG
MRLARREKNVQLIRPLLRMYKADLIEFCNFYNLSYVTDSTNLSSKYRRNAIRMDVLPF
LGQYNERLTPSLNRLAETMADENDFMEASTLSAYEKMVRLDNGRYMFPIASYRKLSVA
LQRRLIKLILNYLPSDSENFDFRKIETVRLRLLQEASSTWSLDLGGGAVGVREYDQAV
LFDRTQVVMGEWCYGLSVLPFSGELELPEAGGILRWRRASYSDADHPANKEEAWFDAD
QLSLPLTVRSRLPGDTMYVMGLNGRKKVKDIFIDEKIPPSMRSVTPIVCDHAGAILWI
PGVRRSVHAAVQKHTSSVIYMSWQRRESPGHR"
misc_feature 58722..59555
/locus_tag="PPE_00056"
/note="tRNA(Ile)-lysidine synthase MesJ [Cell cycle
control, cell division, chromosome partitioning]; Region:
MesJ; COG0037"
/db_xref="CDD:30386"
misc_feature 58779..59348
/locus_tag="PPE_00056"
/note="N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a subfamily
of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases...;
Region: PP-ATPase; cd01992"
/db_xref="CDD:30179"
misc_feature order(58791..58799,58803..58814,58881..58883,58887..58889)
/locus_tag="PPE_00056"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30179"
misc_feature 59889..60092
/locus_tag="PPE_00056"
/note="TilS substrate C-terminal domain; Region: TilS_C;
smart00977"
/db_xref="CDD:198045"
gene 60194..60733
/gene="hpt"
/locus_tag="PPE_00057"
/db_xref="GeneID:9772816"
CDS 60194..60733
/gene="hpt"
/locus_tag="PPE_00057"
/EC_number="2.4.2.8"
/note="TIGRFAMsMatches:TIGR01203; COGMatches:COG0634;
PfamMatches:PF00156; PrositeMatches:PS00103; go_process:
nucleoside metabolism (GO:0009116)"
/codon_start=1
/transl_table=11
/product="Hypoxanthine-guanine phosphoribosyltransferase
(HGPRT)"
/protein_id="YP_003868497.1"
/db_xref="GI:308066892"
/db_xref="GeneID:9772816"
/translation="MQNDIQEILISEEEIQSKIKELGVQLSVKYEGKNPLVICVLKGA
FIFMADLVKTITVPLELDFMAVSSYGASTKSSGIIKIIKDLDASVEGRDVLIVEDIID
SGLTLTHLIELLKNRNANSVCVVTLFDKPARRTVNLEADYTGFTLPDAFVVGYGLDYA
EHYRNLPYIGILKPEIYTS"
misc_feature 60278..60631
/gene="hpt"
/locus_tag="PPE_00057"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(60314..60316,60320..60322,60485..60493,60497..60511,
60581..60583)
/gene="hpt"
/locus_tag="PPE_00057"
/note="active site"
/db_xref="CDD:206754"
gene 60831..62867
/locus_tag="PPE_00058"
/db_xref="GeneID:9772817"
CDS 60831..62867
/locus_tag="PPE_00058"
/EC_number="3.4.24.-"
/note="COGMatches:COG0465; PfamMatches:PF06480, PF00004,
PF01434; PrositeMatches:PS00674; go_component: integral to
membrane (GO:0016021), go_fucntion: ATP binding
(GO:0005524), go_process: proteolysis (GO:0006508)"
/codon_start=1
/transl_table=11
/product="cell division protein ftsH-like protein"
/protein_id="YP_003868498.1"
/db_xref="GI:308066893"
/db_xref="GeneID:9772817"
/translation="MNRFIRNSGFYLILFLVVVGIVQFVSNSNEASDLPRYDQLRQEV
KANNISKVTVQFDGYAYLVTGAYKKQPANAKSTNFSVYVPPTDQALSELVNASETNGF
EYVQKKMEGESIWLTFLTSIIPLVIMFLLFFFLFNQAQGGGGKVMNFGKSKARLYNEE
KKKVTFEDVAGADEEKQELVEVVEFLKDPRKFAAVGARIPKGVLLVGPPGTGKTLLAR
AVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRG
AGLGGGHDEREQTLNQLLVEMDGFGANEGIIIVAATNRPDILDPALLRPGRFDRQITV
DRPDVKGREAVLYVHARNKPLTKDVKLDVIAKRTTGFTGADLENLLNEAALLAARRNR
RDISMREVDEAIDRVIVGTEKRSRVISDREKRIVAYHEAGHTIIGFFLENADMVHKVT
IIPRGRAGGYVIMLPKEDRMLTTKQELLDKITGLLGGRVSEELFIGEIGTGAYSDFQQ
ATSIARSMIVEYGMSEKLGPMQFGTSQGQVFLGRDIGHEQNYSDQIAYQIDQEMNRFI
TESYERARELLTKYSKEVHLIAQTLLVEETLELEQIKRLIETGSLDGGTTDGEGTPEN
GEPVIDNIGDVRVRIQGKDDEPKNTTDQPNDIPNLQKPEDNNSGNSGGTPPTTT"
misc_feature 60858..61151
/locus_tag="PPE_00058"
/note="FtsH Extracellular; Region: FtsH_ext; pfam06480"
/db_xref="CDD:203464"
misc_feature 61173..62648
/locus_tag="PPE_00058"
/note="ATP-dependent metalloprotease FtsH; Region:
FtsH_fam; TIGR01241"
/db_xref="CDD:162266"
misc_feature 61338..61835
/locus_tag="PPE_00058"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 61449..61472
/locus_tag="PPE_00058"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(61452..61475,61626..61628,61767..61769)
/locus_tag="PPE_00058"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 61614..61631
/locus_tag="PPE_00058"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 61809..61811
/locus_tag="PPE_00058"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 62016..62645
/locus_tag="PPE_00058"
/note="Peptidase family M41; Region: Peptidase_M41;
pfam01434"
/db_xref="CDD:201796"
gene 63145..64758
/gene="nadB"
/locus_tag="PPE_00059"
/db_xref="GeneID:9772818"
CDS 63145..64758
/gene="nadB"
/locus_tag="PPE_00059"
/EC_number="1.4.3.16"
/note="TIGRFAMsMatches:TIGR00551; COGMatches:COG0029;
PfamMatches:PF00890, PF02910; go_process: electron
transport (GO:0006118)"
/codon_start=1
/transl_table=11
/product="L-aspartate oxidase"
/protein_id="YP_003868499.1"
/db_xref="GI:308066894"
/db_xref="GeneID:9772818"
/translation="MIPRYLVDFDVAELTRLEADVLIIGSGIAGLYTAIKAAENRKVL
LITKKTLMESNTRYAQGGIAAVTSDEDTPAYHMEDTLIAGAGLCESEAVRTLVHEGPV
GIQELIRLGTAFDRVDGELALTREGAHSHRRILHANGDATGYEIVRALSHQVAAHPGI
EVWEECMVIDLLTEHGQCIGALVQKPGGERSYINANATILCSGGSGQLYRYTTNPDIA
TGDGIAMAYRAGAIVRDMEFIQFHPTALCHPGAPRFLISEAVRGEGAVLRNIHGERFM
DKYDSRQELAPRDIVARAIIHEMERTQAAFVYLDITHEPPERVKQRFPTIYRTCLSFG
LDMTTDWIPIAPAAHYMMGGVQTNLHGESSIARLFACGETSSTGVHGANRLASNSLSE
AIVFASRIIERLHSLPPLVGHTLISYSDNRTEFPASSVAEQRHKLQEAMVRYAGVRRQ
GEGLQAALDELQGLMPIFEAVIASREEIEFANLLTCALLVTDGALLREESRGAHYRED
FPETDDSVWRKHVQQRREQGITEEYVHDI"
misc_feature 63193..64341
/gene="nadB"
/locus_tag="PPE_00059"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 63202..64707
/gene="nadB"
/locus_tag="PPE_00059"
/note="Aspartate oxidase [Coenzyme metabolism]; Region:
NadB; COG0029"
/db_xref="CDD:30379"
misc_feature 64444..>64704
/gene="nadB"
/locus_tag="PPE_00059"
/note="Fumarate reductase flavoprotein C-term; Region:
Succ_DH_flav_C; pfam02910"
/db_xref="CDD:202463"
gene 64748..65638
/gene="nadC"
/locus_tag="PPE_00060"
/db_xref="GeneID:9772819"
CDS 64748..65638
/gene="nadC"
/locus_tag="PPE_00060"
/EC_number="2.4.2.19"
/note="TIGRFAMsMatches:TIGR00078; COGMatches:COG0157;
PfamMatches:PF02749, PF01729; go_process: NAD biosynthesis
(GO:0009435)"
/codon_start=1
/transl_table=11
/product="nicotinate-nucleotide pyrophosphorylase"
/protein_id="YP_003868500.1"
/db_xref="GI:308066895"
/db_xref="GeneID:9772819"
/translation="MTSNSELYGEFSGYQEELTAQIRSWLREDTGSGDVTTRWTIEQG
HQSKAVIHAKESGVVAGIPVAALVFQVVDPSLSFTPLVVDGQWIEKGSVLAEVTGSTH
AILTGERLALNLLQRMSGIATRTRNFIDQLHGLSTRLVDTRKTTPGHRLLEKYAVRVG
GGSNHRFGLYDAVMIKDNHIKGAGGIEQAVSRARAHIPHTMTIEVETENMKQVQEALE
AGADIIMLDNMSVPDMKEAVRFIRERAPHVKTEASGNVSLDTVREMAESGVDVISVGR
LTYSFHNLDISLDLNAKKDR"
misc_feature 64802..65614
/gene="nadC"
/locus_tag="PPE_00060"
/note="Quinolinate phosphoribosyl transferase (QAPRTase or
QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis of
NAD in both prokaryotes and eukaryotes. It catalyses the
reaction of quinolinic acid (QA) with...; Region: QPRTase;
cd01572"
/db_xref="CDD:29619"
misc_feature 64811..65617
/gene="nadC"
/locus_tag="PPE_00060"
/note="nicotinate-nucleotide pyrophosphorylase;
Provisional; Region: PRK07428"
/db_xref="CDD:180974"
misc_feature order(64853..64858,65069..65074,65084..65086,65174..65176,
65180..65182,65192..65197,65252..65257,65267..65269,
65273..65275,65279..65284,65291..65293,65324..65326,
65582..65584)
/gene="nadC"
/locus_tag="PPE_00060"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29619"
misc_feature order(65171..65179,65240..65245,65426..65428,65504..65509,
65564..65566,65570..65575,65582..65584)
/gene="nadC"
/locus_tag="PPE_00060"
/note="active site"
/db_xref="CDD:29619"
gene 65645..66412
/locus_tag="PPE_00061"
/db_xref="GeneID:9772820"
CDS 65645..66412
/locus_tag="PPE_00061"
/note="COGMatches:COG1521; PfamMatches:PF03309;
go_process: positive regulation of transcription
(GO:0045941)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868501.1"
/db_xref="GI:308066896"
/db_xref="GeneID:9772820"
/translation="MILVVDVGNTNIVLGMYEGRELLHHYRISTSRQATADEYGVLIH
NLFSMGGVLKDDIQGVIISSVVPPLVRVLEEMCDKYIGKTPLIVGPGIKTGLNLRYEN
PREVGADRIVNAVAAVERFGGPLVVVDFGTATTFDCIDDKGNYLGGVIVPGIGISTEA
LYQRASKLPRIELEKPKKVIGRNTVHAMQAGIIFGYAGQVDGIVRRIKEEMQAEPTVI
ATGGLAELIASETESIQKVLPMLTLEGLRIIYQRNAE"
misc_feature 65645..66409
/locus_tag="PPE_00061"
/note="pantothenate kinase; Reviewed; Region: PRK13318"
/db_xref="CDD:183972"
gene 66633..67517
/locus_tag="PPE_00062"
/db_xref="GeneID:9772821"
CDS 66633..67517
/locus_tag="PPE_00062"
/note="COGMatches:COG1281; PfamMatches:PF01430;
go_component: cytoplasm (GO:0005737)"
/codon_start=1
/transl_table=11
/product="heat shock protein 33"
/protein_id="YP_003868502.1"
/db_xref="GI:308066897"
/db_xref="GeneID:9772821"
/translation="MENKQDRLIRGTAMDGRVRAFAVRTTQLVEELRRRHDTYPTATA
ALGRTLTAGAIMGSMLKGKERLTIQVKGDGPIGQIVVDANAVGEVRGYVTEPHVHLPS
NSMGKLDVAGAVGTEGFIHIIKDLGLKEPYRGSTPIISGELGEDFTYYFAKSEQTPSA
VGLGVLVDTDNSVIVAGGFIIQLLPGLNDDEITAIENAVSSIPPVTALLDQGLELDEM
LRWMLPDVRILDELDIHFQCECSRERVEKTLISLGESELEQLIEEEGQAEVVCHFCNE
AYQFNKDELQNLLDQAKS"
misc_feature 66645..67511
/locus_tag="PPE_00062"
/note="Hsp33-like chaperonin; Reviewed; Region: hslO;
PRK00114"
/db_xref="CDD:178874"
misc_feature 66654..67475
/locus_tag="PPE_00062"
/note="Heat shock protein 33 (Hsp33): Cytosolic protein
that acts as a molecular chaperone under oxidative
conditions. In normal (reducing) cytosolic conditions,
four conserved Cys residues are coordinated by a Zn ion.
Under oxidative stress (such as heat...; Region: Hsp33;
cd00498"
/db_xref="CDD:29605"
misc_feature order(66687..66689,67080..67082,67092..67100,67176..67178,
67344..67346)
/locus_tag="PPE_00062"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29605"
misc_feature order(66687..66689,67158..67160,67164..67166,67176..67187)
/locus_tag="PPE_00062"
/note="domain crossover interface; other site"
/db_xref="CDD:29605"
misc_feature order(67344..67346,67350..67352,67443..67445,67452..67454)
/locus_tag="PPE_00062"
/note="redox-dependent activation switch; other site"
/db_xref="CDD:29605"
gene 67538..68470
/locus_tag="PPE_00063"
/db_xref="GeneID:9772822"
CDS 67538..68470
/locus_tag="PPE_00063"
/EC_number="5.2.1.8"
/note="COGMatches:COG0760; PfamMatches:PF00639;
PrositeMatches:PS50198; go_fucntion: isomerase activity
(GO:0016853)"
/codon_start=1
/transl_table=11
/product="peptidyl-prolyl isomerase"
/protein_id="YP_003868503.1"
/db_xref="GI:308066898"
/db_xref="GeneID:9772822"
/translation="MTTREKGLWTAVIILTVSVAALGGLIMLRGLSKPGDVSKDDGDH
TVAEMGQEGISEEQWVAELKKRYGTDTLLQMLNRKAVQAETKRLGIKITQEDLQQVLE
QDSKGYDSDHAYFDEMQRQFGLDPVDLRNEAEYRIGLEKIATQGIQVQEAEIDEYWEQ
HPEEFAVGKQIQLAALYVDNAEEAEALLDRVKQGESFDVLIQEYSGKPFGKDSSGQLG
WVDEYDPLQPEAIMKAARELSSGDVAGPISVNDGYAVIYVQDVRLKNSPDKQQIRQQI
RRSLALAQAAPLEEVEKSLRDKYGARILSGKNAS"
misc_feature 67670..68377
/locus_tag="PPE_00063"
/note="peptidylprolyl isomerase; Provisional; Region:
prsA; PRK00059"
/db_xref="CDD:178832"
misc_feature 67982..68323
/locus_tag="PPE_00063"
/note="PPIC-type PPIASE domain; Region: Rotamase_2;
pfam13145"
/db_xref="CDD:205326"
gene 68721..69659
/gene="cysK1"
/locus_tag="PPE_00064"
/db_xref="GeneID:9772823"
CDS 68721..69659
/gene="cysK1"
/locus_tag="PPE_00064"
/EC_number="2.5.1.47"
/note="TIGRFAMsMatches:TIGR01139; COGMatches:COG0031;
PfamMatches:PF00291; PrositeMatches:PS00901; go_process:
metabolism (GO:0008152)"
/codon_start=1
/transl_table=11
/product="cysteine synthase"
/protein_id="YP_003868504.1"
/db_xref="GI:308066899"
/db_xref="GeneID:9772823"
/translation="MAKVVNNITELIGETPLVRLNRIVPEDSAEIYLKLEYQNPGSSV
KDRIAISMVEEAEREGLLKPGGTIIEATSGNTGIGLAMVAAAKGYKAVIVMPETMSIE
RRNLLRAYGAELVLTPGSEGMNGSVKKMEELLSENPDYFAAEQFKNKANVKIHRETTG
PEIVEAIRSIGGTLDAFIAGIGTGGTISGAGEVLKKEFPDIKVVAVEPASSPLLAGGK
PGPHKIQGLGANFIPEILNRDIYDEIIHVENDEAFEVARRVAKEEGILSGISSGAAVH
AALKLAKQLGKGKRIVVIVPSNGERYLSTPLYNFEL"
misc_feature 68730..69635
/gene="cysK1"
/locus_tag="PPE_00064"
/note="Cysteine synthase [Amino acid transport and
metabolism]; Region: CysK; COG0031"
/db_xref="CDD:30381"
misc_feature 68757..69632
/gene="cysK1"
/locus_tag="PPE_00064"
/note="CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a unique
heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine; Region: CBS_like;
cd01561"
/db_xref="CDD:107204"
misc_feature order(68769..68777,68814..68816,68832..68834,68838..68840,
68964..68966,68973..68975,69021..69026,69033..69038,
69045..69050,69213..69218,69498..69506,69510..69518,
69588..69590,69618..69620,69627..69629)
/gene="cysK1"
/locus_tag="PPE_00064"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:107204"
misc_feature order(68853..68855,68943..68945,69261..69278,69396..69398,
69528..69530,69606..69611)
/gene="cysK1"
/locus_tag="PPE_00064"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107204"
misc_feature 68853..68855
/gene="cysK1"
/locus_tag="PPE_00064"
/note="catalytic residue [active]"
/db_xref="CDD:107204"
gene 69786..71408
/locus_tag="PPE_00065"
/db_xref="GeneID:9772824"
CDS 69786..71408
/locus_tag="PPE_00065"
/EC_number="2.6.1.85"
/note="COGMatches:COG0147; PfamMatches:PF04715, PF00425;
go_process: biosynthesis (GO:0009058)"
/codon_start=1
/transl_table=11
/product="Para-aminobenzoate synthase component I"
/protein_id="YP_003868505.1"
/db_xref="GI:308066900"
/db_xref="GeneID:9772824"
/translation="MKSTARVTEAQWQVWWEEGWSILPYIAEYPLPVGGLPSSWQKAW
EDSSPYAFLLESAKGGRYTYLALNPVAILEGKGEHAVWTDLQSGKHGDMHGQPLKVMS
NWIAPYRAPRVPGMPFFSGGFAGYLGYDVARSLERLPSQAADDTDIPDYVWMRVDELW
IYDHEKSCIYCAVHMPAPAHSDKASSDTDLTNRVILDGPNSILCEHYAGAAQRAERML
TQWNNIINAGEIDPAYPRRCARLAEEGLEAAHQESDGWTAAFNQQDFEDAVRRVQEYI
AQGDVFQVNLSIRQQRALTALPENIYEWLRLLNPSPYMGMLRMPDLRFVSGSPELLVK
LEDGRVSARPIAGTRRRGLTPDEDAAMAAELLSSEKERAEHIMLVDLERNDIGRIAEY
GSVHVPELLTVEYYSHVMHLVSQVEGKLASGRSAIDVIAATFPGGTITGAPKVRTMEI
IEELEPVRRGPYTGSLGWIDYNGNMELNIIIRTLAVKGSTAYLQTGAGIVIDSDPYRE
YRECRNKARAVMKAVQCGEEEAALSRSGITGG"
misc_feature 69924..71357
/locus_tag="PPE_00065"
/note="anthranilate synthase component I,
non-proteobacterial lineages; Region: trpE_most;
TIGR00564"
/db_xref="CDD:161932"
misc_feature 69930..70295
/locus_tag="PPE_00065"
/note="Anthranilate synthase component I, N terminal
region; Region: Anth_synt_I_N; pfam04715"
/db_xref="CDD:203074"
misc_feature 70566..71330
/locus_tag="PPE_00065"
/note="chorismate binding enzyme; Region: Chorismate_bind;
pfam00425"
/db_xref="CDD:201219"
gene 71414..71989
/locus_tag="PPE_00066"
/db_xref="GeneID:9772825"
CDS 71414..71989
/locus_tag="PPE_00066"
/EC_number="2.6.1.85"
/EC_number="4.1.3.27"
/note="COGMatches:COG0512; PfamMatches:PF00117;
PrositeMatches:PS00442; go_fucntion: catalytic activity
(GO:0003824)"
/codon_start=1
/transl_table=11
/product="Para-aminobenzoate/anthranilate synthase
glutamine amidotransferase component II"
/protein_id="YP_003868506.1"
/db_xref="GI:308066901"
/db_xref="GeneID:9772825"
/translation="MILVIDNYDSFTYNLVQYLGELGEEVTVKRNDEIDVKGIEELAP
EHILISPGPCTPNEAGISLDVISHFKGRIPIFGVCLGHQAIGQAFGGKVIRAERLMHG
KTSPILHHNTSVFEGLPSPFTATRYHSLLVERESLPECLEITAETAEGEIMGLRHKEF
AVEGVQFHPESIITDYGHQLLRNFLKRKVGV"
misc_feature 71414..71977
/locus_tag="PPE_00066"
/note="para-aminobenzoate synthase component II;
Provisional; Region: PRK08857"
/db_xref="CDD:181566"
misc_feature 71417..71968
/locus_tag="PPE_00066"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Anthranilate synthase; Region:
GATase1_Anthranilate_Synthase; cd01743"
/db_xref="CDD:153214"
misc_feature order(71564..71569,71573..71575,71648..71653,71660..71662,
71792..71803)
/locus_tag="PPE_00066"
/note="glutamine binding [chemical binding]; other site"
/db_xref="CDD:153214"
misc_feature order(71648..71650,71915..71917,71921..71923)
/locus_tag="PPE_00066"
/note="catalytic triad [active]"
/db_xref="CDD:153214"
gene 71993..72889
/locus_tag="PPE_00067"
/db_xref="GeneID:9772826"
CDS 71993..72889
/locus_tag="PPE_00067"
/EC_number="4.1.3.38"
/note="COGMatches:COG0115; PfamMatches:PF01063;
go_process: metabolism (GO:0008152)"
/codon_start=1
/transl_table=11
/product="aminodeoxychorismate lyase"
/protein_id="YP_003868507.1"
/db_xref="GI:308066902"
/db_xref="GeneID:9772826"
/translation="MKYIGVNGVLTEAAKAVIHVSDHGFLYGMGLFETFRTYKGVPFL
LDRHLHRLQEGCRMLGIPFQPDEEQLTRHIQHLMVANGLDEAYIRYTVSAGEEVLGLP
TGDYTRPNHILFAKPLPSTNTQTGQSISPSALQLLRTPRNTPEGEVRLKSLHYMNNIL
AKRELQQYAEAVRYKAEGMMLTADGFLAEGMVSNLFFVRNNTLYTPDLSTGILPGITR
EFILELAHLRAIPCEQGLYRWDELKQADEIFMTNSIQEIQPVDLLLEPGGATNHLSVP
LTQPKSITALLLHDYRQKAGIK"
misc_feature 72056..72853
/locus_tag="PPE_00067"
/note="PyridoxaL 5'-Phosphate Dependent Enzymes class IV
(PLPDE_IV). This D-amino acid superfamily, one of five
classes of PLPDE, consists of branched-chain amino acid
aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate...; Region:
PLPDE_IV; cd00449"
/db_xref="CDD:29567"
misc_feature order(72062..72067,72071..72076,72080..72082,72086..72088,
72164..72166,72257..72259,72263..72265,72326..72328,
72449..72451,72461..72463,72467..72469,72479..72481,
72536..72538)
/locus_tag="PPE_00067"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29567"
misc_feature order(72086..72088,72143..72145,72443..72445,72557..72559,
72638..72643,72749..72751)
/locus_tag="PPE_00067"
/note="substrate-cofactor binding pocket; other site"
/db_xref="CDD:29567"
misc_feature order(72143..72145,72443..72445,72557..72559)
/locus_tag="PPE_00067"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:29567"
misc_feature 72443..72445
/locus_tag="PPE_00067"
/note="catalytic residue [active]"
/db_xref="CDD:29567"
gene 72886..73752
/locus_tag="PPE_00068"
/db_xref="GeneID:9772827"
CDS 72886..73752
/locus_tag="PPE_00068"
/EC_number="2.5.1.15"
/note="COGMatches:COG0294; PfamMatches:PF00809;
PrositeMatches:PS50972, PS00792, PS00793; go_process:
folic acid and derivative biosynthesis (GO:0009396)"
/codon_start=1
/transl_table=11
/product="dihydropteroate synthase"
/protein_id="YP_003868508.1"
/db_xref="GI:308066903"
/db_xref="GeneID:9772827"
/translation="MNIPTLYQRIYRMGDAELTLGHSTQIMGILNVTPDSFSDGGLHY
SPEIAVLHALKLVEDGADIIDIGGESTRPGHDPVSVEEELARVIPVVEAIHRIAPHIP
LSVDTYKAEVARQALEAGAHIINDVWGFKADPDMARVASEFDCPVILMHNRHDRNYSD
LVSDMLSDLKESIRLALDAGVREEQIILDPGIGFAKDYDENIHAMTSLDTLSQLGFPL
LLATSRKRFIRTALDLPVNDVVEGTAATVAFGIAQGCQIVRVHDVAQIKRTVRMCDAM
VYGSKNALSYGG"
misc_feature 72955..73707
/locus_tag="PPE_00068"
/note="DHPS subgroup of Pterin binding enzymes. DHPS
(dihydropteroate synthase), a functional homodimer,
catalyzes the condensation of p-aminobenzoic acid (pABA)
in the de novo biosynthesis of folate, which is an
essential cofactor in both nucleic acid and...; Region:
DHPS; cd00739"
/db_xref="CDD:29545"
misc_feature 72958..73713
/locus_tag="PPE_00068"
/note="dihydropteroate synthase; Region: DHPS; TIGR01496"
/db_xref="CDD:162390"
misc_feature order(72976..72978,73201..73203,73258..73260,73264..73266,
73333..73335,73450..73452,73546..73548,73558..73560,
73660..73662,73666..73668)
/locus_tag="PPE_00068"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29545"
misc_feature order(73489..73491,73501..73506,73618..73620,73630..73632,
73642..73644,73687..73692)
/locus_tag="PPE_00068"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29545"
misc_feature 73552..73560
/locus_tag="PPE_00068"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:29545"
gene 73967..74329
/gene="folB"
/locus_tag="PPE_00069"
/db_xref="GeneID:9772828"
CDS 73967..74329
/gene="folB"
/locus_tag="PPE_00069"
/EC_number="4.1.2.25"
/note="TIGRFAMsMatches:TIGR00525; COGMatches:COG1539;
PfamMatches:PF02152; go_process: folic acid and derivative
metabolism (GO:0006760)"
/codon_start=1
/transl_table=11
/product="dihydroneopterin aldolase"
/protein_id="YP_003868509.1"
/db_xref="GI:308066904"
/db_xref="GeneID:9772828"
/translation="MDKMVLHRMEYYGYHGVFPEERKLGQRFYIDLELELDLREAGKQ
DALDKTVNYAEVHYTVKDIVEKESYQLIEALGERIASSLLDTYTSVNALTVKVTKPHP
PFDIHFQGVTVELYRARK"
misc_feature 73967..74317
/gene="folB"
/locus_tag="PPE_00069"
/note="Dihydroneopterin aldolase (DHNA) and
7,8-dihydroneopterin triphosphate epimerase domain
(DHNTPE); these enzymes have been designated folB and
folX, respectively. Folate derivatives are essential
cofactors in the biosynthesis of purines, pyrimidines,
and...; Region: DHNA_DHNTPE; cd00534"
/db_xref="CDD:29762"
misc_feature order(73970..74002,74018..74044,74267..74272,74285..74311)
/gene="folB"
/locus_tag="PPE_00069"
/note="homooctamer interface [polypeptide binding]; other
site"
/db_xref="CDD:29762"
misc_feature order(74012..74020,74027..74029,74174..74185,74261..74263,
74303..74305)
/gene="folB"
/locus_tag="PPE_00069"
/note="active site"
/db_xref="CDD:29762"
gene 74339..74887
/locus_tag="PPE_00070"
/db_xref="GeneID:9772829"
CDS 74339..74887
/locus_tag="PPE_00070"
/EC_number="2.7.6.3"
/note="COGMatches:COG0801; PfamMatches:PF01288;
go_process: folic acid and derivative biosynthesis
(GO:0009396)"
/codon_start=1
/transl_table=11
/product="2-amino-4-hydroxy-6-
hydroxymethyldihydropteridine pyrophosphokinase"
/protein_id="YP_003868510.1"
/db_xref="GI:308066905"
/db_xref="GeneID:9772829"
/translation="MNAHSTSEASEAYIALGANLGEREHTLYEAITALDEHPGIRVLR
CSSLYETEPVGYLDQPSFLNMTVAVSTTLAPEELLVYMLDVESRLGRVRHIPNGPRTI
DLDLLWMEAAQLATTDLELPHPRMLERAFVLVPLADIVPNQDPSGLYSIVHTALNSVD
GKDGIQLWKTCSWRNDSAPFGS"
misc_feature 74372..74755
/locus_tag="PPE_00070"
/note="7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
(HPPK). Folate derivatives are essential cofactors in the
biosynthesis of purines, pyrimidines, and amino acids as
well as formyl-tRNA. Mammalian cells are able to utilize
pre-formed folates after...; Region: HPPK; cd00483"
/db_xref="CDD:29601"
misc_feature order(74387..74389,74489..74494,74498..74500,74522..74524,
74528..74530,74573..74575,74585..74587,74594..74596,
74609..74611,74615..74617,74627..74629,74636..74638,
74645..74647,74651..74656,74696..74698,74705..74710,
74723..74725,74729..74731)
/locus_tag="PPE_00070"
/note="catalytic center binding site [active]"
/db_xref="CDD:29601"
misc_feature order(74573..74575,74585..74587,74594..74596,74609..74611,
74615..74617,74636..74638,74651..74656,74696..74698,
74705..74710,74723..74725)
/locus_tag="PPE_00070"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29601"
gene 74839..75039
/locus_tag="PPE_00071"
/db_xref="GeneID:9772830"
CDS 74839..75039
/locus_tag="PPE_00071"
/note="COGMatches:COG1396; PfamMatches:PF01381;
PrositeMatches:PS50943; go_fucntion: DNA binding
(GO:0003677)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator yazB"
/protein_id="YP_003868511.1"
/db_xref="GI:308066906"
/db_xref="GeneID:9772830"
/translation="MENMQLAQRLRAFRKLKGFTQQELAERTGISLTVLGAVERGNRT
VDPDMLNLIAQTLEIEVRELTE"
misc_feature 74857..75030
/locus_tag="PPE_00071"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature order(74869..74871,74881..74883,74956..74958)
/locus_tag="PPE_00071"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(74878..74880,74953..74955)
/locus_tag="PPE_00071"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(74899..74904,74935..74937,74944..74946,74956..74961)
/locus_tag="PPE_00071"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene 75085..76113
/locus_tag="PPE_00072"
/db_xref="GeneID:9772831"
CDS 75085..76113
/locus_tag="PPE_00072"
/EC_number="1.-.-.-"
/note="COGMatches:COG0042; PfamMatches:PF01207;
PrositeMatches:PS01136; go_process: tRNA processing
(GO:0008033)"
/codon_start=1
/transl_table=11
/product="tRNA-dihydrouridine synthase 1"
/protein_id="YP_003868512.1"
/db_xref="GI:308066907"
/db_xref="GeneID:9772831"
/translation="MLKIGGIEMKNQVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVS
DKAIIHGNKRTREMLFVDEREKPLSLQIFGGDRESLVKAAKVVDQETNADIIDINMGC
PVPKVTKCDAGARWLLDPNKIYEMVSSVVESVSKPVTVKMRIGWDSEHIYAVENARAV
ERAGGQAVSVHGRTREQLYTGHANWDIIKEVKEAVSIPVIGNGDVASPEDARRMLDLT
HCDGVMIGRGALGNPWMLYRTIEYLQSGELLPDPSPEEKIRIAILHMDRLVALKGEAV
AVREMRKHLAWYLKGLKGSARIKDVIMEETKRDDMVRILDQFVSQLHMVDNDEPSTIA
TSPAAVAQ"
misc_feature 75094..76038
/locus_tag="PPE_00072"
/note="putative TIM-barrel protein, nifR3 family; Region:
nifR3_yhdG; TIGR00737"
/db_xref="CDD:129820"
misc_feature 75121..75813
/locus_tag="PPE_00072"
/note="Dihydrouridine synthase-like (DUS-like) FMN-binding
domain. Members of this family catalyze the reduction of
the 5,6-double bond of a uridine residue on tRNA.
Dihydrouridine modification of tRNA is widely observed in
prokaryotes and eukaryotes, and also...; Region:
DUS_like_FMN; cd02801"
/db_xref="CDD:73368"
misc_feature order(75130..75138,75208..75210,75295..75297,75379..75381,
75505..75507,75595..75597,75688..75690,75694..75696,
75760..75765)
/locus_tag="PPE_00072"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73368"
misc_feature order(75295..75297,75388..75393,75505..75507,75511..75513,
75592..75597,75601..75606,75691..75696,75763..75765)
/locus_tag="PPE_00072"
/note="active site"
/db_xref="CDD:73368"
misc_feature order(75388..75390,75511..75513,75595..75597,75601..75603)
/locus_tag="PPE_00072"
/note="catalytic residues [active]"
/db_xref="CDD:73368"
misc_feature order(75391..75393,75505..75507,75592..75594,75604..75606,
75691..75696)
/locus_tag="PPE_00072"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73368"
gene 76328..76804
/locus_tag="PPE_00073"
/db_xref="GeneID:9772832"
CDS 76328..76804
/locus_tag="PPE_00073"
/note="COGMatches:COG0782; PfamMatches:PF03449, PF01272;
PrositeMatches:PS00829; go_process: regulation of
transcription, DNA-dependent (GO:0006355)"
/codon_start=1
/transl_table=11
/product="transcription elongation factor greA (transcript
cleavage factor greA)"
/protein_id="YP_003868513.1"
/db_xref="GI:308066908"
/db_xref="GeneID:9772832"
/translation="MSDKEVILTQEGLRKLEDELENLKSVKRREVAERIKVAIGYGDI
SENSEYEDAKNEQAFIEGRVITLEKMLRNARIINSDEIDTDVVGVGATVTVEDLEFGD
ITEYAIVGSAESDPLQNKISNESPVGKAILGKKKGTVVDVTVPAGVIQYKIVDIKK"
misc_feature 76331..76798
/locus_tag="PPE_00073"
/note="transcription elongation factor GreA; Reviewed;
Region: greA; PRK00226"
/db_xref="CDD:178936"
misc_feature 76343..76555
/locus_tag="PPE_00073"
/note="Transcription elongation factor, N-terminal;
Region: GreA_GreB_N; pfam03449"
/db_xref="CDD:190636"
misc_feature 76613..76798
/locus_tag="PPE_00073"
/note="Transcription elongation factor, GreA/GreB, C-term;
Region: GreA_GreB; pfam01272"
/db_xref="CDD:201702"
gene 76915..78435
/gene="lysS"
/locus_tag="PPE_00074"
/db_xref="GeneID:9772833"
CDS 76915..78435
/gene="lysS"
/locus_tag="PPE_00074"
/EC_number="6.1.1.6"
/note="TIGRFAMsMatches:TIGR00499; COGMatches:COG1190;
PfamMatches:PF01336, PF00152; PrositeMatches:PS50862;
go_fucntion: nucleic acid binding (GO:0003676),
go_component: cytoplasm (GO:0005737)"
/codon_start=1
/transl_table=11
/product="lysyl-tRNA synthetase"
/protein_id="YP_003868514.1"
/db_xref="GI:308066909"
/db_xref="GeneID:9772833"
/translation="MSDETTNQESQENREELSELLQIRRAKLDELRSLGIDPFGRKYI
RTAEAGVLLSKYDSLTKEELEEKNIEVSIAGRIMAKRVMGKASFAHIQDLSGRIQIYV
RQDTVPESKYKAFGILDLGDIVGVKGVLFKTKTGETTIKVLDIEVLSKSLYPLPEKYH
GLKDVELRYRQRYVDLVMNPEVQKTFITRSRIIQSMRRYLDSLGYLEVETPTLHSIAG
GAAAKPFITHHNALDMQLYMRIAIELHLKRLIVGGMEKVYEIGRVYRNEGISTRHNPE
FTMIELYEAYADYKDIMQLTENMVAHIAQEVLGTQHIQYQGQEVDLTPQWRRVSMVDA
VKEVTGVDFSVQMSNEEAHRLAKEHKVPVEPHMTFGHILNAFFEQFVEETLIQPTFIT
GHPVEISPLAKKNEQDPRFTDRFELFVVAREHANAFTELNDPIDQRQRFEAQLLEREH
GNDEAHEMDDDFIRALEYGMPPTGGLGIGIDRLVMLLTDAPSIRDVLLFPHMRNQQ"
misc_feature 76957..78432
/gene="lysS"
/locus_tag="PPE_00074"
/note="lysyl-tRNA synthetase; Reviewed; Region: lysS;
PRK00484"
/db_xref="CDD:179044"
misc_feature 77122..77442
/gene="lysS"
/locus_tag="PPE_00074"
/note="LysRS_N: N-terminal, anticodon recognition domain
of lysyl-tRNA synthetases (LysRS). These enzymes are
homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs).
This domain is a beta-barrel domain (OB fold) involved in
binding the tRNA anticodon stem-loop; Region: LysRS_N;
cd04322"
/db_xref="CDD:58592"
misc_feature order(77137..77142,77191..77196,77281..77283,77359..77361,
77368..77376)
/gene="lysS"
/locus_tag="PPE_00074"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:58592"
misc_feature order(77149..77151,77155..77160,77176..77178,77209..77211,
77215..77217,77269..77271,77311..77313,77329..77331)
/gene="lysS"
/locus_tag="PPE_00074"
/note="putative anticodon binding site; other site"
/db_xref="CDD:58592"
misc_feature 77449..78423
/gene="lysS"
/locus_tag="PPE_00074"
/note="Lys_tRNA synthetase (LysRS) class II core domain.
Class II LysRS is a dimer which attaches a lysine to the
3' OH group of ribose of the appropriate tRNA. Its
assignment to class II aaRS is based upon its structure
and the presence of three...; Region: LysRS_core; cd00775"
/db_xref="CDD:29820"
misc_feature 77545..77559
/gene="lysS"
/locus_tag="PPE_00074"
/note="motif 1; other site"
/db_xref="CDD:29820"
misc_feature order(77641..77643,77707..77709,77713..77715,77731..77733,
77743..77745,78160..78162,78181..78183,78190..78192,
78202..78204,78358..78360)
/gene="lysS"
/locus_tag="PPE_00074"
/note="active site"
/db_xref="CDD:29820"
misc_feature 77704..77715
/gene="lysS"
/locus_tag="PPE_00074"
/note="motif 2; other site"
/db_xref="CDD:29820"
misc_feature 78349..78360
/gene="lysS"
/locus_tag="PPE_00074"
/note="motif 3; other site"
/db_xref="CDD:29820"
gene 78526..79863
/locus_tag="PPE_00075"
/db_xref="GeneID:9772834"
CDS 78526..79863
/locus_tag="PPE_00075"
/note="COGMatches:COG0168; PfamMatches:PF02386;
go_process: cation transport (GO:0006812)"
/codon_start=1
/transl_table=11
/product="Trk-type K+ transporter membrane component"
/protein_id="YP_003868515.1"
/db_xref="GI:308066910"
/db_xref="GeneID:9772834"
/translation="MKRSVKLSRFASPPFILVIGYLLIIALGTLLLMLPVANHSGHAP
HWIDSLFTSVSAACVTGLVVVDVDSTYTMFGETVILVLMQLGGLGFMTLATLFALLLG
RRLSLKDRLLLKEAINADSMEGIVRIIRKVLIFSFTIEAIAAVVLALRWMREMPVGQA
IYYGIFHSVSLFNNGGFDLFGTSFQQYAGDFVFNMIASVLVISGGLGFLVLSDLFDFR
RTRRLSLHSKMVLSVSGALIVIGALVIFIFEFTNARTLGALNWEGKVYGAVFQSVSTR
SSGTSTVDISGLRQASQFFIMLLMIIGASPGSTGGGIKTTTFLLMVGALIAVMRGQKE
IVFFRHRVPKDIMMRALTIIVLALFIFSIVVILLLMTEDAPFLSLAFEAASAIGTVGL
SVGVTPGLSDAGKLIICVTMFIGRIGPLTIAYAIRPRSTKTLYRRPEGHIVIG"
misc_feature 78628..79773
/locus_tag="PPE_00075"
/note="potassium uptake protein, TrkH family; Region:
2a38; TIGR00933"
/db_xref="CDD:162118"
misc_feature 78886..79809
/locus_tag="PPE_00075"
/note="Cation transport protein; Region: TrkH; pfam02386"
/db_xref="CDD:111294"
gene 80159..80692
/locus_tag="PPE_00076"
/db_xref="GeneID:9772835"
CDS 80159..80692
/locus_tag="PPE_00076"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868516.1"
/db_xref="GI:308066911"
/db_xref="GeneID:9772835"
/translation="MYLFIISAEVLFWVFVVAGLIARYMFGLKKLGGLLLLFTPIIDI
LLLIAVFITVKSGMEITTATGLAACYFGITVAFGHRLIKWADVRFSHWFGKGPKPERK
YGAAHAKEERIGWLLHLLGWAIGNALLLAIIVYVNDPQRTLSLEGIMQTWAIVLAIDF
VVSFSYTLAPKKQKRSL"
gene 81155..81925
/locus_tag="PPE_00077"
/db_xref="GeneID:9772836"
CDS 81155..81925
/locus_tag="PPE_00077"
/EC_number="1.3.1.9"
/note="COGMatches:COG0623"
/codon_start=1
/transl_table=11
/product="enoyl-ACP reductase"
/protein_id="YP_003868517.1"
/db_xref="GI:308066912"
/db_xref="GeneID:9772836"
/translation="MAVLLSGKNILIMGVANNRSIAWGTAQSLAAEGAQLIFTYENER
VAERVLKLVETIPGALVCPCNVQSNEELDALADFLKEKVGVLHGYFHSVAYAKAEDLD
GLFVDTSREGFAVAQEISAYSLAAVSRRVYPLMTEGGSIVTMTYIGAERAIKNYNVMG
VAKASLEASMRYLSNDLGTYGIRVNAISAGPIRTLAAYGIKDFNTMLKHIEETTPLRK
TVDTSEVGDTALFLFSHLSRGITGEVIHVDAGYHITGM"
misc_feature 81164..81922
/locus_tag="PPE_00077"
/note="Enoyl-[acyl-carrier-protein]; Region: FabI;
COG0623"
/db_xref="CDD:30968"
misc_feature 81173..81919
/locus_tag="PPE_00077"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature order(81194..81202,81212..81217,81275..81277,81344..81352,
81428..81439,81509..81511,81584..81592,81620..81622,
81641..81643,81719..81730,81734..81745)
/locus_tag="PPE_00077"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature order(81245..81247,81350..81361,81368..81370,81464..81484,
81491..81496,81503..81508,81515..81520,81527..81529,
81539..81541,81548..81550,81596..81601,81605..81616,
81620..81625,81632..81637,81644..81649,81656..81661,
81665..81682,81686..81691,81770..81772,81779..81781,
81797..81808,81824..81826,81833..81838,81845..81847,
81860..81862,81866..81904,81908..81919)
/locus_tag="PPE_00077"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(81350..81361,81464..81484,81491..81496,81503..81508,
81515..81520,81527..81529,81536..81541,81548..81550,
81596..81601,81605..81613,81620..81625,81632..81637,
81644..81649,81656..81661,81665..81673,81677..81685)
/locus_tag="PPE_00077"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(81434..81436,81440..81442,81590..81592,81620..81622,
81629..81631,81641..81643,81740..81745,81752..81754,
81761..81763)
/locus_tag="PPE_00077"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(81512..81514,81590..81592,81629..81631,81641..81643)
/locus_tag="PPE_00077"
/note="active site"
/db_xref="CDD:187630"
gene 81938..83398
/locus_tag="PPE_00078"
/db_xref="GeneID:9772837"
CDS 81938..83398
/locus_tag="PPE_00078"
/note="COGMatches:COG1020; PfamMatches:PF00501;
PrositeMatches:PS00455; go_process: metabolism
(GO:0008152)"
/codon_start=1
/transl_table=11
/product="Non-ribosomal peptide synthetase module
containing protein"
/protein_id="YP_003868518.1"
/db_xref="GI:308066913"
/db_xref="GeneID:9772837"
/translation="MLITHTDCRIISPEGIMTRERLERDVTIFSRMLTLRGIPEDGRV
ILKAANSYWFVVSLFSLCNIAVSVTVVDEQTVLDEVAQIYDEAGACCILTDSDLELPH
ALVILIQDLIQEEAVHPDWVGEPKLEALDFNKWCERSDALILYSSGTTGKPKGIVKAG
SAFMENIRHSIHAMNYLPSDHMLPVVPFSHFYGISLIFSWWLTSCSLIICNPKNLWSV
IASITKDRATVVDANPSAFYTLLRMLNRKPEQLEMVKEAPVRMWCVGGSPLTQDLEDK
FSNIFGQPLLNGYGLSELGNVTLGTLECPKGCGPPLPGVDLKILDSAGNQQADGIVGE
VWIRSAGCMEGYLNRPDLTQSVLQDGWFKTGDLGYLDDGMLYVIGRSGKTVNRMGYMV
SPVYIEDRIGSLGYRSCVITLEDEAKGTLLVAFIEGESSQALSVLRKEINRVLPSYMF
PDLLLPLDHFPLNRNGKVDRLEMERIALEKVASRKV"
misc_feature 81986..83395
/locus_tag="PPE_00078"
/note="Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites biosynthesis,
transport, and catabolism]; Region: CaiC; COG0318"
/db_xref="CDD:30666"
misc_feature 81989..83149
/locus_tag="PPE_00078"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
gene 83443..84666
/locus_tag="PPE_00079"
/db_xref="GeneID:9772838"
CDS 83443..84666
/locus_tag="PPE_00079"
/note="COGMatches:COG1012; PrositeMatches:PS00070"
/codon_start=1
/transl_table=11
/product="NAD-dependent aldehyde dehydrogenase"
/protein_id="YP_003868519.1"
/db_xref="GI:308066914"
/db_xref="GeneID:9772838"
/translation="MSINPELAENTLFLKRHESILKCLNYLIENRQEVMDILTQFSSY
RAANAEIDSTILTLQGALQEVQTYQPSWQRSMAVFMPSNVILYSYALYLLIPSLYVEN
IDFRPSSHVNEYVNMLHEKLQAVHGLPIYIRKVSQRVFMENSVMPADIVVFTGSYVNA
EKIKKQIRKDQLYIFYGQGINPFVIGPDADLELAVTDVIRMRLFNSGQDCLGPDIILV
HQEVSEHFKDLLIQRLDQLVFGANDDPNANYSPIFYKDALNSVSEYFNTNDKFIIYGG
GIDFRTKKMEPTVVYSELDQNLEIIEYFSPVFNVVSYQDDEQLIKRISSSYFSERAMG
CSLYGSEHLTDVLRKKHTLTINQTLEDVDQGNKPFGGYGTMSNYIFYDFKLISKPILI
SEIVAEYLSEKRSLV"
misc_feature 83485..84564
/locus_tag="PPE_00079"
/note="NAD-dependent aldehyde dehydrogenases [Energy
production and conversion]; Region: PutA; COG1012"
/db_xref="CDD:31216"
misc_feature <83977..84576
/locus_tag="PPE_00079"
/note="NAD(P)+-dependent aldehyde dehydrogenase
superfamily; Region: ALDH-SF; cl11961"
/db_xref="CDD:213126"
misc_feature order(84061..84063,84070..84072)
/locus_tag="PPE_00079"
/note="catalytic residues [active]"
/db_xref="CDD:143395"
gene 84663..86363
/locus_tag="PPE_00080"
/db_xref="GeneID:9772839"
CDS 84663..86363
/locus_tag="PPE_00080"
/note="COGMatches:COG0028; PfamMatches:PF02776, PF00205,
PF02775; go_fucntion: thiamin pyrophosphate binding
(GO:0030976)"
/codon_start=1
/transl_table=11
/product="thiamine pyrophosphate-requiring enzyme"
/protein_id="YP_003868520.1"
/db_xref="GI:308066915"
/db_xref="GeneID:9772839"
/translation="MTASFSPWDAIIGYLKSAGVQHLFGLPSDDLKIVSSLPSSGMDF
ILCKDQRNAVFMAAGYALTTNHMSVCVVGKGPALSNTLTGLLEAKNLGAPLLLLALGT
GGDKLGTRSFQEADQISLVKPLVKWAYRVEHVDRLVWAMERAAFLAINGAPGPVYIEL
PENLMDQPVPTGLQFTPPEKLSCSPSRRELDGSWGIIENARRPLILVGGGMKSGTGDV
IERFANQHGAALFATASGRGVVDEDHELFCGVAGLYTDLSLRQIWKESDVVITLGSRL
EETATFEWDILLQDTPLIQVNVNLEDFAHEYKGIKVLGDGYAAVEQWLERRGQEPDGV
WLETIRSCKQEAFSHRAIYLEKLKKTPGIHVPELLDMIQTEFPENLVLLQENGLQDMW
SYFYPFFRFAHGSLSIVPSDQTSLGFGAAAALGASVATQRPVVALVGDGAFNLFCSDF
MTAVEYQIPLIYIVLNNGGYGWLQNQMNYKHLTGQSLPFVSEAAKTGIQIPQYEFVES
LAIRSKGEAREQLQLAWQKYQENKLVVVEVYADLADVHEKISHVYGDFPLYEQQASKN
"
misc_feature 84663..86285
/locus_tag="PPE_00080"
/note="Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism]; Region: IlvB; COG0028"
/db_xref="CDD:30378"
misc_feature 84687..85148
/locus_tag="PPE_00080"
/note="Pyrimidine (PYR) binding domain of POX and related
proteins; Region: TPP_PYR_POX_like; cd07035"
/db_xref="CDD:132918"
misc_feature order(84726..84728,84741..84746,84753..84755,84765..84767,
84789..84809,84816..84818,84825..84830,84837..84842,
84846..84854,84888..84890,84909..84911,84921..84923,
84930..84935)
/locus_tag="PPE_00080"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(84741..84749,84753..84755,84765..84767,84792..84794,
84798..84809,84813..84815,84888..84890,84897..84902,
84906..84911,84918..84920,85020..85022,85029..85031)
/locus_tag="PPE_00080"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132918"
misc_feature order(84741..84743,84810..84812,84888..84890,84900..84902)
/locus_tag="PPE_00080"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132918"
misc_feature 85248..85628
/locus_tag="PPE_00080"
/note="Thiamine pyrophosphate enzyme, central domain;
Region: TPP_enzyme_M; pfam00205"
/db_xref="CDD:201080"
misc_feature 85761..86276
/locus_tag="PPE_00080"
/note="Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and...; Region:
TPP_enzymes; cd00568"
/db_xref="CDD:48162"
misc_feature order(85908..85910,85977..85988,86061..86063,86067..86069)
/locus_tag="PPE_00080"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48162"
gene 86387..87628
/locus_tag="PPE_00081"
/db_xref="GeneID:9772840"
CDS 86387..87628
/locus_tag="PPE_00081"
/EC_number="2.3.1.41"
/note="COGMatches:COG0304; PfamMatches:PF00109, PF02801;
PrositeMatches:PS00606; go_process: fatty acid
biosynthesis (GO:0006633)"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-[acyl-carrier-protein] synthase II
(beta-ketoacyl-ACP synthase II)"
/protein_id="YP_003868521.1"
/db_xref="GI:308066916"
/db_xref="GeneID:9772840"
/translation="MRRRVVVTGQGVVTPVGLNLTDFWNSLLEGKSGIGPVTAFDTAD
IPTKIGAQVTGFDPLQYMSKKEANKVAQFTQFALAAARQAVEQSKLVIDERNASRVGV
IVGSGAGGLDVIEENYGKLTKLGPKRVSPYFVSSMMINSAPGEISIAIGAKGPSFAVV
TACATGSNAIGEALRTIQYGTADVVVAGGAEANFSQLDLASFANIHALSRRNEEPQKA
SRPFDVDRDGFVIGGGAGVLVLEELEYALNRGATILAEVVGYGCTTDAYHITAPDPSG
SGPAEAINIALQDGGLTPQEIDYVNAHGTSTPFNDRMEINAIQKVFGEHAPRLAISSI
KSMTGHLMGGAGAVELIATVQSMIHSKVPPTLNCDNPEAPELNFVPHVYQEREVRAAI
SNSFGFGGHNVCLAVRKWEGE"
misc_feature 86438..87610
/locus_tag="PPE_00081"
/note="beta-ketoacyl-acyl-carrier-protein synthase II;
Region: fabF; TIGR03150"
/db_xref="CDD:200247"
misc_feature 86441..87607
/locus_tag="PPE_00081"
/note="Beta-ketoacyl-acyl carrier protein (ACP) synthase
(KAS), type I and II. KASs are responsible for the
elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen...; Region:
KAS_I_II; cd00834"
/db_xref="CDD:29421"
misc_feature order(86705..86707,86726..86731,86741..86743,86747..86752,
86786..86788,86804..86806,86816..86818,86828..86830,
86846..86848,86852..86854,86858..86866,86900..86902,
86909..86914,86921..86923,86984..86989,86996..87001,
87173..87187,87227..87229,87581..87583,87587..87589)
/locus_tag="PPE_00081"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29421"
misc_feature order(86873..86875,87293..87295,87404..87406)
/locus_tag="PPE_00081"
/note="active site"
/db_xref="CDD:29421"
gene 87633..88040
/locus_tag="PPE_00082"
/db_xref="GeneID:9772841"
CDS 87633..88040
/locus_tag="PPE_00082"
/note="COGMatches:COG0764; PfamMatches:PF07977"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868522.1"
/db_xref="GI:308066917"
/db_xref="GeneID:9772841"
/translation="MSEELIHIPDVLPHRYPFLLLDGVTGYETSQWAKGYKLVTWSEW
FITDTNPYMPPMLIVESLAQLAAFAAIDKKGISYLTNLNGIRFHSLAKPGDRIDLYFE
VIKRRRGYILGKGRALVGDRLVVEAEEIVSLDQ"
misc_feature 87666..88016
/locus_tag="PPE_00082"
/note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
protein (ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid...; Region: FabZ; cd01288"
/db_xref="CDD:48033"
gene 88134..111860
/locus_tag="PPE_00083"
/db_xref="GeneID:9772842"
CDS 88134..111860
/locus_tag="PPE_00083"
/EC_number="5.1.1.11"
/EC_number="5.1.1.13"
/note="COGMatches:COG1020; PfamMatches:PF00668, PF00501,
PF00550, PF00975; PrositeMatches:PS00012, PS50075,
PS00455; go_fucntion: molecular function unknown
(GO:0005554), go_process: metabolism (GO:0008152),
go_fucntion: cofactor binding (GO:0048037), go_process:
biosynthesis (GO:0009058)"
/codon_start=1
/transl_table=11
/product="bacitracin synthetase 3"
/protein_id="YP_003868523.1"
/db_xref="GI:308066918"
/db_xref="GeneID:9772842"
/translation="MNDMQLYDLTNAQKRIWYTELLYPDTSVSQLSGTAKMKGHINIA
AFMQSINLIIKQYDAFRIRITSVDGLPQQYVVPYEERQLECLDLSHYESVSEVEALLE
QHKSKPLPLLDSELFQFLIVKISEEEYWINIKMHHIISDGISMVVYGNKLTEFYMELI
QGNEPQLGEDCSYIQYISDENAYELSDRYQKDKAYWLDKFSDLPELTGWKSYNPLSLS
THAVREHFTVPEVLYHELQAFCQQNRISLFQFFMGAMYIYIHKMTNQPDVVIGTSFAN
RGNKKEKQKIGMFVSTAAARTYVKKDMDVLSFLQDVARDQMSVLRHQKYPYNQLIQDL
REMHGNKDIQRLFGVSMEYRLINWVDLDDVRILTDYDFCGDEVNDFVLHIVEILDEGE
LVLDVDYRTELFERSEVKDMVSQLLTIAEQIIHSPQLSIAEVNLLGEPEEQSILALSE
GAAVDYPREKTIHGLFEEQAERTPDHVAVQMDEQSITYLALNEQANQLARYLRSEGVG
ADTLVGIMADRSLEMVIGMLAILKAGGAYVPIDPDYPEERIHYMLEDSGVRLLLTQSH
LWESTTFDGKLVSLDEATTYTGDASNLESISGPSHLAYVIYTSGTTGKPKGTLIEHKN
VVRLLFNDKNLFDFSSQDTWTLFHSFCFDFSVWEMYGALLYGGKLVIVPSLTAKSPAA
FLELLKDNQVTILNQTPTYFYQVLQEELTHSSTELGLRKIIFGGEALSPSLLRNWRVK
YPDVQLINMYGITETTVHVTYKEITEHEIEAGKSNIGRTIPTLSAYILDEQRRLQPVG
VPGELYIAGDGLARGYLNRPDLTSEKFVEHPYRAGERLYRTGDLARWLPDGNIEYLGR
IDHQVKIRGYRIELGEVEAQILKAPNVRETIVLAREDEQGQKLLCAYYVASSDLSPGE
LRAQLAAELPAYMIPSYFVRLEQMPLTPNGKLDRRALPAPESSVQSGEAYLAPRTAVE
AQMVLIWQDILGVARVGVRDNFFEIGGHSLRATVLVSRIHKELGCSISLREVFQSPTV
ESLAQLVKKHIPTLYESIPQATESEAYPVSSAQKRLYVLRQMDGGELSYNMPGVFTVD
GPLDRTRLESAFQALIRRHESLRTGFYMQDGELVQRVHRNVPFALNYTEASVEETDTL
IHNFIRAFDLSQAPLLRVSLVKLQEERHLLLFDMHHIISDGVSIQILIEELTHLYQGE
QLPELHIQYKDYAVWQREQSENQWQDLEKYWLQSFEGELPVLDLPTDFQRPSVRSFEG
SRIDFTLDESGNKAIQELASRTGTTLYMVLLAAYSVLLHKYTGQEDIVVGSPVAGRPQ
AELEGIIGMFVNTLALRSYPTGDKTFQDYLLEIKETALKAFEHQDYPFEKLVEKLGVG
RDVSRNPLFDTLLVLQNTEQEEQEMDGVHFTPYLMDTVTAKFDLSLNVEEKGSKLAFG
LEYSTALYRRESVERFATHLLRVLHAVSVNPQLQLAEIEMITPEEKVQIVEVFNATSA
PYPRDKTIHELFAEQAKRTPEQTALVFGDVQLTYLELEDKASRLAQTLRRLGTLREQP
VAVMGGRSIEMVIGMLAVLQAGGAYVPIDPDYPEDRVRYMLNDSDAKLLLVQKGELIN
VDYGIPIVDLSSKEAYAAEPAQPETAQGSQGLAYVIYTSGTTGRPKGVMVEHRNVVRL
VKETNYVELNESTRILQTGAVAFDASTFEIWGALLNGGQLYFVENDDILIADRLKAAI
AKYGITTLWLTSPLFNQLSLQDEYLFRGLKALLVGGDVLSLSHMNRVIEANPDLIPIN
CYGPTENTTFSTTYKIPGRAEGGVPIGRPISNSTAYVVNGSLQLQPIGAWGELIVGGE
GVARGYLNRPDLTAEKFVPSPVKDGEPCYRTGDLVRWLPDGDLEFKGRIDEQVKIRGY
RIELPEIEAQLAKVESVIDAVVVVRADELGEKQLCAYYVADRTLTAGEVRLSLSQVLP
GYMIPSYFIQMDRMPLTSNGKVDRRSLPAPQVGAHTGRKYTAPRTPAEEALASVWQGV
LGAEQVGIHDNFFELGGDSIKAIQVSSRLLQAGYRLEMKQLFKSPTIAELGAEIQTAV
HMAEQGVVRGTTRLTPVQQWFFGRKQAEPHHFNQAVMLYREQGFEEKALHQVLRKLAE
HHDALRMVFRQTEHGYEAWNRDLEEGELYSLFTADLRNESDPTAAITSLSDDIQRSIN
LAEGPLLKLGLFHCQDGDHLLIVIHHLVVDGVSWRILFEDIAAGYEQVIQGQALTFPQ
KTDSFRDWGDALARYSEGPEMETHRAYWRELEDQPLEQLPKDEAVESLLLQDSKVVTA
QWTIEETDQLLRKAHRAYQTETNDLLLTALGMAVSKWSGIGKVAVNLEGHGREPIIPN
IDITRTVGWFTSQFPVILDLGNNPEVASLIKSVKEGLRRIPNKGIGYGLLKTMASQLD
EGSFSLQPEISFNYLGQFDQDLQGSSLQISPYPTGSAQSLLEEPAYTLDINGMVTDGA
LTLTITYNGKQYKSSTMEQLAGYIEESLRELLQHCVTQEKTVLTPSDVLAKGLSIADL
EELSKQTSHIGDIENVYSLTPMQKGMLFHDMFEPHTGAYFEQAAFDFKGSFDPTAFGH
SLDAVVERHAILRTNFYSGWGSEPLQVVFRHRGAKLVYEDLREMNASQREAYLKTFGA
KDKALGFNLAEDELLRVSILQTDEESFRLLWSFHHIVMDGWCVPLITQEVFEHYFALL
EGREPQLAEVHPYSRYIEWLEQQDEAVASNYWSRYLAGYEQQTLLPQVGGASKGEGYI
AEKLNYPLSRELTERLEKVARDAHVTMNILLQSLWGIALQRYNGSRDVVYGSVVSGRP
AEIPGIDRMIGLFINTIPVRVKTEENLPFTVLMKQQQEQYMASHMYGTYPLFEIQAQT
DQKQDLISHIMVFENYPVEEEVERLGGGEAAFEIEEAELLEQTNYDFNLIVLPGEEMR
LLFQYNALVYDPVTIGQIKGHLVHLMEQIVENPAISVDALELITPQEREQILNVWGNT
KAIYEHYNTFHGLLEEQAGRTPDAAAIWFEDESLTYAELNAKANGLARRLRTQGIKTG
DLVGLIAERSLEMIVGIYGIMKAGGAYVPIDPEYPQERISYMLEDSGAKLILTQAHLL
EHLGWTENVLLLDESSTYDADTSNLEDTAGPDDLAYVIYTSGTTGQPKGVLVEHRGLP
NLSDVYGAHFEVTPQDRIVQFASLSFDASVSEILTALSHGGVLCIPSAQDILDHALFE
QFMNDKGITVATLPPAYAIHLDPERLPTLRCLLTAGSTASIELIEEWRKHVRYSNGYG
PTEDSVCTTIWSVPDSEEATNIVSIGRPIANHSVYILDDHFRLQPVGVAGELCISSIG
LARGYHNRPELMDEKFVDNPFAPGERMYRTGDLVRWLPNGNIEYLGRIDHQVKIRGYR
IELGEVEAQMLRVPSVQEVVAMAVEGDDGYKDLVAYFVAAQKLEVSELRAVLSEMLPG
YMIPSRFIQLEDMLLTSNGKIDRKALQGERGWAAASSEAPRTPLEIQLAEIWQEVLGV
ESAGVKDNFFHFGGHSLRAALLVSRIRKEMNREISLRAVFESPTIEGLARVIEGYTPL
NFEEIPTAGAREHYPLSSAQKRLFILSQLEGGELSYNMPGILTVEGALDRERLEQAFR
RLIHRHGSLRTRFVTVNGEPVQQLLTDVPFTVEYAELSEEEAGATLQQFVRPFDLGVA
PLLRVGLIRIAHERHLLLFDMHHIVSDGVSMNILIEEFLRFYQEEDVFPELQIQYTDY
AVWQQEQLGSERLKAQEAYWLDAFRGSLPVLDLPGDEVRPAVRSFAGDRIDFQIDSSL
SASLQELATRTGSTLFMVLLAAYTALLHKYTGQEDVIVGSPVAGRSHATLEGLIGMFV
GTVALRTYPEGEKPFEAYLQEVKETALRAYENQDYPFEELVEKLELQRDLSRNPLFDT
MFVLQNIEQGEQEIEGLRFTPYDNVHPAAKFDLTLTVSEVDGALNCTLEYATAIYKQE
TAERMAGHFVQLIREAIANPALPLSSLDIVTPQEKSRLMKAPDEAKADYPRDKTIHAL
FEEQAARTPNAVAVVCEDAALSYSELNERANGLARTLRERGLQPDGLAGIMADRSLEM
VVGILAILKAGGAYVPVDPEYPEDRIHFMLEDSGAKLLLTQAHLEQRVSFAGNIVSLD
KTASYKEDVSNLQPAAGPNHLAYVIYTSGTTGKPKGTLIEHKNVVRLLFNDKNMFDFD
AQDTWTLFHSFCFDFSVWEMYGALLNGGRLVIVPSLTAKSPDRFLQLLKDQKVTVLNQ
TPTYFYQLLQEELGHQAAELSLRMIIFGGEALTPALLKDWRTKYPQVQLINMYGITET
TVHVTYKEITELEIEQGRSNIGTTIPTLRAYILDEQRRPQPIGIPGELYVAGVGLARG
YLNRPELTEEKFVAHPFEAGERMYRSGDLARWLPDGSMEYLGRIDHQVKIRGYRIELG
EVEAKLLHAPSVREAVVLAREDGSGQKVLIGYFTADQMLTVGELRKALAAELPAYMIP
SYFMQLEQMPLTPNGKLDRKALPAPEANVQTGAVYEPPRTKAEETLASVWQGVLGAQQ
VGIHDHFFDLGGDSIKAIQVSSRLFQAGYKLEMKDLFKYPTIAELSPYLQAAGRTAEQ
GEIKGAAELMPIQRWFFERHTAEPHHYNHAVMLYRKDGFDEAALRLTMDQIAIHHDAL
RMVFRPTEAGYAAWNRGTDEGELYTLDIADVRQVEDQTAAVQAQADAIQASFDLEGGP
LFKLGLFHCDDGDHLLIVIHHLLVDGVSWRILFEDIAAGYEQALNGQAIILPQKTDSY
LVWSEQATKYAAGPALDKERAYWQLIEEAILAPLPKDEDQKPGTIRDTESVTVTWSAQ
ETDLLLRQANRAYHTETNDLLLTALGAAIQRWTGMEQILVNLEGHGREMIVPDLDITR
TVGWFTTQYPVLLNLQGRQEVSARIKRIKENLREVPHKGIGYGLLKYIAPEKSVGFGV
EPEISFNYLGQFDQDLEGNALSLSTHSVGKALSDLTPQQYALDVNGMIAEGQLSLTIT
YSSRQYRKETVSHFAELLQSSLSEVILHCVAQERSQLTPSDVLFQGLTLEQLDRLTAQ
TAHIGEIEDVYKLTAMQKGMLFHSLLEPDSSSYFEQATFELRGSFDVDIFFESFQALA
QRHAILRTGFYNNIADVPLQVAFKQRLIPLHYVDLRDASMQEQEARIKAYIAEDMVKG
FSLSEDPLMRVTVLQKDQSCLVLWSFHHIVMDGWCIPIITQELFDYYSAKKQQIQPVL
PPAQPYSRYIEWLDAQDEQEASTYWSQYLEDYDGNTVLPEGKTKSQAKEAGYVLKEHV
LHLGASLTGKMDVVAKRNHVTVNTLMQTAWGLILQRYNASSDVVFGGVVSGRPAEIAG
IENMVGLFINTVPIRVQSSKDEAFVKVMKRTQAQSLAGRAYDTYPLYEIQGKTTQKQD
LISHIMIFENYPLDEQVEQSGNQTEDNLEVANFTMFEQTNYDFNLVVIPGEDIKVCIR
YNASVYEQESIARIGGHLLQMLDQVAARPQATIQELEIVTSEERMNLLDWGGKAHAYP
SDQGLHTLFEEQVVRTPDKIAAISGDIQITYRELNEQANRLASTLIAQGLRSEQVVGL
LADRSVELLVAIMGVLKAGGAYVPIDPEYPQERIQYILKDSGAEILLTQSHLTKLASF
EGMVMELDSSHIYGTGVNNPNIPVRGNDLVYLIYTSGTTGNPKGTMINHKGIVNYIWW
ANKVYCAGQPTDFPLYSSISFDLTMTSMFTPLINGGIVRIYDGIDKAEVVQHILRENA
VDILKLTPTHLSLIKDMAIPAESRIQQLIVGGENLTTHLSKIITDLFGGNIKIYNEYG
PTETVVGCMIHLYDPAKDTRESVPIGLPSDNIYIHILDEQLRLVPLGVEGEMYIAGDG
VARGYLNRPDLTAEKFIRNPFAAEGNMYRTGDLARRLPNGDIEYIGRIDHQVKIRGYR
IELGEIEAKLLDIPLVEEALVVAWADAHGQKSLCAYFVADREMSVSELRNELSAGLPA
YMIPSYFVQLDVMPLTPNGKLDRKALPEPNSGIKAGADFTAPRTDVENILASIWQGVL
GVPLVGIHDNFFELGGDSIKSIQVSSRLLQAGYKLEMKDLFGYPTIAELAQRVSVVSR
IADQSEVHGSVRLSPAQHRFFDEQSMDLHHFNQSVMLYRRDGFNTDALAEVVRKIAEH
HDALRLVFRQGEQGLEAWNRSMGEGELYSLQIHDLRDETDPASAIEAGAEAIQRSISL
EDGPLFRLGLFRCAEGEHLLIVIHHLAVDGVSWRILFEDLQEGYEQAARGEAVKFPQK
TDSYRAWVEGITQFANSPAAEQERSYWAEVEGDGFVPLPKDKVDGALLIKDSEAVTVR
WSPEETEQFLKEANRTYNTEVNDLLLTALGMAVHEWTGIERVGILLEGHGREPVVPEL
DITRTIGWFTSQYPVALEMGGELEIGARIKHVKEGLRRIPNKGVGYGILKYLSDGSDV
SSFSAEPEITFNYLGQFDQDLAGGMMEVSSYSVGPEVSEQMVQHQAVNINGLIAEGQL
QLSVSYNRHQLHGESVAKFVGILKNRLSEVIGHCVSKERTELTPSDVLLKDISLEKIE
ELEEQTRHIGSIENMYKLTPMQKGMLFHSLLEPHSEVYFEQAKFEIQGAFYPEDFKRS
LKYLMKRHAILRTNFHAGWGDFPIQIVFKERACDFVYEDLHELEADEIQARLAAYTAQ
DKARGFNLAEEALLRVAILRTAEEAYHLLWSSHHIILDGWCMPLVLQEVFETYGALRE
QREPELPAAVSYSQYIQWLEKQGEEEASSYWRGYLEGYEQQTKLPQAITQPSAKAEAY
VSEKLVFTLDAELTDRLEQVAKQHQVTMNTLMQAAWGIVLQRYNRSQDVVFGSVVSGR
PAEIPGIESMIGLFINTVPVRVQAEGSDSFSHVMKRQQELYLAGHAYDSYPLYEIQAQ
SEQKQDLISHIMVFENYPVEEHLEEKIANDEAEYKITDVQMFEQTNYDFNLIVLPGRS
LEFLYRYNARVYDRESVERIQGHLTRILTSVSVQPAIRIDELELITPEEKSQIIEVWG
DTAAPYPREKTLHGIFEEKAALTPDRTALIYGETVLTYGELHQQANRLARTLRVQGVR
PDQPVGIMVERSLEMIIGIHAILKAGGAYVPIDPGFPEDRIRHMLEDSGAKLLLTKNH
LKDRFPFTGTILSLDDPQAYHADDSNLEPVAGPEHLAYIIYTSGSTGKPKGVMIEHHS
AVHTLSQLEAEYPMLAGDRFLLKTTFTFDFSVPELFCWFFGQGTLVILPPGVDKDPVA
LLEAVDANQITHLNLVPSMLSVLVQYLKESSTQGFLTLKYLFACGETLPAKLVEEYYK
VSPYAVLENIYGPTEAAVYATRYTTSLETAALTHVPIGKPYANVQVWMMDSASQVSPV
GVPGELCIAGEGVARGYFNQPDLTAEKFIPHPYKPGERIYRTGDLARWVPDGNIEYLG
RIDHQVKIRGYRIELGEVEAQILKVPSVQEAVVLALADSTGSTQLCAYFVAEEGLAAG
VLREALASELPSYMIPTAFVQLAQMPLNPNGKLDRKALPAPETLLRSTAEYIAPRTQT
EVELAQIWSEVLGVQEIGIRDHFFELGGHSLKVLGLIQRISSGMGVQLPLQVVFNLPT
VEEMAHEIFKLQATTSADEQEMEIIHFPGKGILKVFCFPPRVGHSLGYYEMAKELDGL
CEVYGMEFIGDRFQGQDMLDRYIDAIVDIQAEGPYIFLGYSLGGNLAFEVAKAMEIRG
HHVGDIIMVDAMRKMSKDESTPEELEEIVETVLDSIREQYKAFLADPADRERVMDKML
VYSTYRDELINAGEVHANIHALIAEDDSVGPDTSLDKLLWQQATLGQYKEYEVIGTHD
VLLDSGFVGENAKVLRQILGKIAETSSKNKPILS"
misc_feature 88152..89033
/locus_tag="PPE_00083"
/note="Condensation domain; Region: Condensation;
pfam00668"
/db_xref="CDD:144314"
misc_feature 88815..90776
/locus_tag="PPE_00083"
/note="Non-ribosomal peptide synthetase modules and
related proteins [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: EntF; COG1020"
/db_xref="CDD:31223"
misc_feature 89097..89369
/locus_tag="PPE_00083"
/note="HxxPF-repeated domain; Region: HxxPF_rpt;
pfam13745"
/db_xref="CDD:205919"
misc_feature 89592..90797
/locus_tag="PPE_00083"
/note="amino acid adenylation domain; Region:
AA-adenyl-dom; TIGR01733"
/db_xref="CDD:211687"
misc_feature <90654..90971
/locus_tag="PPE_00083"
/note="AMP-binding enzyme; Region: AMP-binding; cl15778"
/db_xref="CDD:212383"
misc_feature 91065..91244
/locus_tag="PPE_00083"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:201300"
misc_feature 91275..106523
/locus_tag="PPE_00083"
/note="peptide synthase; Provisional; Region: PRK12316"
/db_xref="CDD:183432"
misc_feature 92217..92489
/locus_tag="PPE_00083"
/note="HxxPF-repeated domain; Region: HxxPF_rpt;
pfam13745"
/db_xref="CDD:205919"
misc_feature 92712..93899
/locus_tag="PPE_00083"
/note="amino acid adenylation domain; Region:
AA-adenyl-dom; TIGR01733"
/db_xref="CDD:211687"
misc_feature 94152..94343
/locus_tag="PPE_00083"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:201300"
misc_feature 95298..95756
/locus_tag="PPE_00083"
/note="non-ribosomal peptide synthase domain TIGR01720;
Region: NRPS-para261"
/db_xref="CDD:211683"
misc_feature 97242..98420
/locus_tag="PPE_00083"
/note="amino acid adenylation domain; Region:
AA-adenyl-dom; TIGR01733"
/db_xref="CDD:211687"
misc_feature 98670..98861
/locus_tag="PPE_00083"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:201300"
misc_feature 99840..100112
/locus_tag="PPE_00083"
/note="HxxPF-repeated domain; Region: HxxPF_rpt;
pfam13745"
/db_xref="CDD:205919"
misc_feature 100335..101540
/locus_tag="PPE_00083"
/note="amino acid adenylation domain; Region:
AA-adenyl-dom; TIGR01733"
/db_xref="CDD:211687"
misc_feature <101397..101714
/locus_tag="PPE_00083"
/note="AMP-binding enzyme; Region: AMP-binding; cl15778"
/db_xref="CDD:212383"
misc_feature 101793..101984
/locus_tag="PPE_00083"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:201300"
misc_feature 102939..103394
/locus_tag="PPE_00083"
/note="non-ribosomal peptide synthase domain TIGR01720;
Region: NRPS-para261"
/db_xref="CDD:211683"
misc_feature 104883..106076
/locus_tag="PPE_00083"
/note="amino acid adenylation domain; Region:
AA-adenyl-dom; TIGR01733"
/db_xref="CDD:211687"
misc_feature 106335..106520
/locus_tag="PPE_00083"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:201300"
misc_feature 106572..107462
/locus_tag="PPE_00083"
/note="Condensation domain; Region: Condensation;
pfam00668"
/db_xref="CDD:144314"
misc_feature 107475..107933
/locus_tag="PPE_00083"
/note="non-ribosomal peptide synthase domain TIGR01720;
Region: NRPS-para261"
/db_xref="CDD:211683"
misc_feature 107979..111539
/locus_tag="PPE_00083"
/note="enterobactin synthase subunit F; Provisional;
Region: entF; PRK10252"
/db_xref="CDD:182335"
misc_feature 109428..110636
/locus_tag="PPE_00083"
/note="amino acid adenylation domain; Region:
AA-adenyl-dom; TIGR01733"
/db_xref="CDD:211687"
misc_feature <110493..110810
/locus_tag="PPE_00083"
/note="AMP-binding enzyme; Region: AMP-binding; cl15778"
/db_xref="CDD:212383"
misc_feature 110892..111083
/locus_tag="PPE_00083"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:201300"
gene complement(111975..113006)
/locus_tag="PPE_00084"
/db_xref="GeneID:9772843"
CDS complement(111975..113006)
/locus_tag="PPE_00084"
/note="COGMatches:COG0596; PfamMatches:PF00561"
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase"
/protein_id="YP_003868524.1"
/db_xref="GI:308066919"
/db_xref="GeneID:9772843"
/translation="MKQRRRTWMRIVLGIISCLLLIVISGFVYEWIASKKDKSQYPPL
GRMVDAGGYRLHIRKMGAGSPTIVLESGSGESSLSWRDIPEKLSSFATVVSYDRAGYA
WSEEANTPRTGKNIVRELHTALKNADIQPPYILVGHSLGGMYSRLYTQTYKDEVAGLV
LVDARPENDARRTNKIYAKEQPKVNPSPLISILLEKSGAFRLFPNFMLTGRVEYQDRK
SFVNIVASSKYFRSVAEEGDLASTTEDAIRGQHLGNLPVRVIARGIQQDLTQFGISKR
GNDQIEQSWQMGQREMLNISTNSKFIVAKKSEHMIIHDQPELVIRVIRELITDTSHFQ
STMSKSIHR"
misc_feature complement(112041..112769)
/locus_tag="PPE_00084"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
gene 113576..115081
/locus_tag="PPE_00085"
/db_xref="GeneID:9772844"
rRNA 113576..115081
/locus_tag="PPE_00085"
/product="16S ribosomal RNA"
/db_xref="GeneID:9772844"
gene 115442..118366
/locus_tag="PPE_00086"
/db_xref="GeneID:9772845"
rRNA 115442..118366
/locus_tag="PPE_00086"
/product="23S ribosomal RNA"
/db_xref="GeneID:9772845"
gene 118522..118638
/locus_tag="PPE_00087"
/db_xref="GeneID:9772846"
rRNA 118522..118638
/locus_tag="PPE_00087"
/product="5S ribosomal RNA"
/db_xref="GeneID:9772846"
gene 118985..120442
/gene="guaB"
/locus_tag="PPE_00088"
/db_xref="GeneID:9772847"
CDS 118985..120442
/gene="guaB"
/locus_tag="PPE_00088"
/EC_number="1.1.1.205"
/note="TIGRFAMsMatches:TIGR01302; COGMatches:COG0516;
PfamMatches:PF00478, PF00571; PrositeMatches:PS00487;
go_fucntion: catalytic activity (GO:0003824)"
/codon_start=1
/transl_table=11
/product="inosine-5`-monophosphate dehydrogenase"
/protein_id="YP_003868525.1"
/db_xref="GI:308066920"
/db_xref="GeneID:9772847"
/translation="MWEDKFGKEGLTFDDVLLVPRKSVVLPKEVSVATRLSDNVKLNI
PLMSAGMDTVTEAVLAIAMAREGGIGIIHKNMSIEQQAVEVDRVKRSESGVITNPFSL
TPDHLVSDAEAVMGKYRISGVPVVNEENKLVGIITNRDLRFIHDFNLKISEVMTKEEL
VTAPVGTTLQEAEVILQKHKIEKLPLVDDENYLKGLITIKDIEKAIQFPNAAKDAQGR
LLVGAAVGISKDTFDRTEALVKAGVDMIVVDSAHGHHINIIEAVRKLREAYPDLTIVA
GNVATGDGTRELIEAGASVVKVGIGPGSICTTRVIAGIGVPQVTAIYDCATVAREYNI
PIIADGGIKYSGEITKAIAAGASAVMLGSLFAGTEESPGESEIYQGRRFKVYRGMGSM
AAMKQGSKDRYFQDDDKKLVPEGIEGRVAYKGPLSDTVHQLLGGLRSGMGYCGTANIE
ELRNDTSFIRITGAGLRESHPHDVQITKEAPNYSL"
misc_feature 118991..120439
/gene="guaB"
/locus_tag="PPE_00088"
/note="inosine 5'-monophosphate dehydrogenase; Reviewed;
Region: PRK05567"
/db_xref="CDD:180134"
misc_feature 119012..>119251
/gene="guaB"
/locus_tag="PPE_00088"
/note="TIM barrel proteins share a structurally conserved
phosphate binding motif and in general share an eight
beta/alpha closed barrel structure. Specific for this
family is the conserved phosphate binding site at the
edges of strands 7 and 8. The phosphate...; Region:
TIM_phosphate_binding; cl09108"
/db_xref="CDD:213114"
misc_feature 119270..119599
/gene="guaB"
/locus_tag="PPE_00088"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains in the
inosine 5' monophosphate dehydrogenase (IMPDH) protein.
IMPDH is an essential enzyme that catalyzes the first step
unique to GTP synthesis, playing a key...; Region:
CBS_pair_IMPDH; cd04601"
/db_xref="CDD:73101"
misc_feature <119621..120367
/gene="guaB"
/locus_tag="PPE_00088"
/note="IMPDH: The catalytic domain of the inosine
monophosphate dehydrogenase. IMPDH catalyzes the
NAD-dependent oxidation of inosine 5'-monophosphate (IMP)
to xanthosine 5' monophosphate (XMP). It is a
rate-limiting step in the de novo synthesis of the
guanine...; Region: IMPDH; cd00381"
/db_xref="CDD:73364"
misc_feature order(119894..119902,119999..120001,120005..120007,
120068..120073,120140..120142,120146..120154,
120224..120229)
/gene="guaB"
/locus_tag="PPE_00088"
/note="active site"
/db_xref="CDD:73364"
gene 120769..122157
/locus_tag="PPE_00089"
/db_xref="GeneID:9772848"
CDS 120769..122157
/locus_tag="PPE_00089"
/EC_number="3.4.16.4"
/note="COGMatches:COG1686; PfamMatches:PF00768, PF07943;
go_process: proteolysis (GO:0006508)"
/codon_start=1
/transl_table=11
/product="D-alanyl-D-alanine carboxypeptidase"
/protein_id="YP_003868526.1"
/db_xref="GI:308066921"
/db_xref="GeneID:9772848"
/translation="MKANNLKQNTKRSMIKKSVTAVMVLNMMYMSALPVVGSFDPSVA
TFAAGAATQAINITGTGSINPPNLALRSAILIEPSTGQVLLSMNPDEPLPPASMTKMM
TEYIVAEQVKQGKLKWTDKVTVNENASKSIGSRIFLAQGDQHTVEELYIAMAVGSAND
ATVALAERVSGTEQDFVKLMNETAQRMGMKNTYFINSTGLDRSDMPKGFQPDTDRETV
MTARDAATLASYIIKDHPDYTRFTTIQSYKFRPTDKAPLININWMLEANKNITNFRKF
AYPGLDGMKTGHTANAGNCFTGTAERNGMRLISVVMGADSDAHRFTETAKVLNYGFDN
FEVKQVIAPKTVVKGVENVPVTKGTETEVPIVTKDAVSFIVPKGASNPKVTFTTNITP
ASSLVAPLKQGAKVGTITYTYKTDGVDKGQTKTVDLVTTTAVEEGGWFRMLFRAIGDF
FGDLFQGIKNLF"
misc_feature 120958..122133
/locus_tag="PPE_00089"
/note="D-alanyl-D-alanine carboxypeptidase [Cell envelope
biogenesis, outer membrane]; Region: DacC; COG1686"
/db_xref="CDD:31872"
misc_feature 121003..>121449
/locus_tag="PPE_00089"
/note="Beta-lactamase enzyme family; Region:
Beta-lactamase2; pfam13354"
/db_xref="CDD:205534"
misc_feature 121771..122076
/locus_tag="PPE_00089"
/note="Penicillin-binding protein 5, C-terminal domain;
Region: PBP5_C; pfam07943"
/db_xref="CDD:203813"
gene 122352..123170
/locus_tag="PPE_00090"
/db_xref="GeneID:9772849"
CDS 122352..123170
/locus_tag="PPE_00090"
/note="TIGRFAMsMatches:TIGR00343; COGMatches:COG0214;
PfamMatches:PF01680; PrositeMatches:PS01235; go_fucntion:
molecular function unknown (GO:0005554)"
/codon_start=1
/transl_table=11
/product="Pyridoxine biosynthesis protein pdx1"
/protein_id="YP_003868527.1"
/db_xref="GI:308066922"
/db_xref="GeneID:9772849"
/translation="MDVMNAEQAKIAEAAGATAVMALERVPSDIRAAGGVARMADPTI
VEEVMKVVSIPVMAKARIGHFVEAKVLESLGVDYLDESEVLTPADEVFHIDKREFTVP
FVCGAKDLGEALRRIGEGASMIRTKGEPGTGNIVEAVRHMRFINGQIRKVQNLSKDEL
YAEAKNLGVAYELLLEVHELGKLPVVNFAAGGVATPADAALMMHLGADGVFVGSGIFK
SDSPEKFARAIVEATTHYTDYKLIAEVSKNLGAPMKGIEISKLAPHERMQDRGW"
misc_feature 122352..123164
/locus_tag="PPE_00090"
/note="PdxS is a subunit of the pyridoxal 5'-phosphate
(PLP) synthase, an important enzyme in deoxyxylulose
5-phosphate (DXP)-independent pathway for de novo
biosynthesis of PLP, present in some eubacteria, in
archaea, fungi, plants, plasmodia, and some...; Region:
pdxS; cd04727"
/db_xref="CDD:73389"
misc_feature order(122355..122357,122412..122414,122526..122528,
122742..122750,122925..122927,122982..122984)
/locus_tag="PPE_00090"
/note="active site"
/db_xref="CDD:73389"
misc_feature order(122457..122459,122463..122465,122487..122489,
122532..122534,122541..122549,122556..122558,
122607..122621,122745..122753,122757..122759,
122766..122771,122778..122780,122931..122933,
122940..122945,123066..123068)
/locus_tag="PPE_00090"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73389"
gene 123187..123753
/locus_tag="PPE_00091"
/db_xref="GeneID:9772850"
CDS 123187..123753
/locus_tag="PPE_00091"
/note="COGMatches:COG0311; PfamMatches:PF01174;
PrositeMatches:PS01236"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868528.1"
/db_xref="GI:308066923"
/db_xref="GeneID:9772850"
/translation="MKIGVLSLQGAVAEHIRSVERAGAECIAVKKIEQLNELSGLIIP
GGESTTIGKLMRKYDFIEAIRQFSNQGKPVFGTCAGLIVLAKTIQGQEEAHLGLMDIT
VSRNAFGRQRESFETDLNIKGIEEPVRAVFIRAPLIQSVGTGVDVLSEYNGEIVAARQ
GHLLASSFHPELTDDYRLHQYFVDMVRE"
misc_feature 123193..123735
/locus_tag="PPE_00091"
/note="Glutamine Amidotransferase (GATase_I) involved in
pyridoxine biosynthesis; Region: GATase1_PB; cd01749"
/db_xref="CDD:153220"
misc_feature 123229..123720
/locus_tag="PPE_00091"
/note="imidazole glycerol phosphate synthase subunit HisH;
Provisional; Region: hisH; PRK13152"
/db_xref="CDD:171876"
misc_feature order(123319..123327,123418..123420,123499..123501,
123583..123588,123691..123693,123697..123699)
/locus_tag="PPE_00091"
/note="predicted active site [active]"
/db_xref="CDD:153220"
misc_feature order(123418..123420,123691..123693,123697..123699)
/locus_tag="PPE_00091"
/note="catalytic triad [active]"
/db_xref="CDD:153220"
gene 123789..125072
/gene="serS1"
/locus_tag="PPE_00092"
/db_xref="GeneID:9772851"
CDS 123789..125072
/gene="serS1"
/locus_tag="PPE_00092"
/EC_number="6.1.1.11"
/note="TIGRFAMsMatches:TIGR00414; COGMatches:COG0172;
PfamMatches:PF02403, PF00587; PrositeMatches:PS50862;
go_process: seryl-tRNA aminoacylation (GO:0006434),
go_process: tRNA aminoacylation for protein translation
(GO:0006418)"
/codon_start=1
/transl_table=11
/product="seryl-tRNA synthetase"
/protein_id="YP_003868529.1"
/db_xref="GI:308066924"
/db_xref="GeneID:9772851"
/translation="MLDIKILRNELGRVEKALQNRGKSLDLINGFTDLDVSRRELLQE
SEGLKNRRNVVSGEVAKLKKNKENADDLIAEMRQVSDRIKELDEQVRELEVQIDELVM
SIPNIPNDTVPVGASEEDNVEIRRWSEPREFSFTPKAHWELAQDLDILDFEAAAKVTG
SRFTFYKGLGARLERALINFMMDLHSSEHGYEEMLPPYIVNRDSLYGTGQLPKFEEDL
FKLRDTEYYLIPTAEVPVTNYHREEIMNAEQLPKYYVAYSSCFRSEAGSAGRDTRGLI
RQHQFNKVEMLKLVHPDTSYEELEKMTNNAERVLQLLGLPYRVLALCTGDMGFTSAKT
YDLEVWLPESGMYREISSCSNTEDFQARRANIRFRPDSKAKPEFVHTLNGSGLAVGRT
VAAILENYQQEDGSIVIPEVLRSYMRGIEVIAPKQ"
misc_feature 123789..125066
/gene="serS1"
/locus_tag="PPE_00092"
/note="seryl-tRNA synthetase; Provisional; Region:
PRK05431"
/db_xref="CDD:180077"
misc_feature 123789..124112
/gene="serS1"
/locus_tag="PPE_00092"
/note="Seryl-tRNA synthetase N-terminal domain; Region:
Seryl_tRNA_N; pfam02403"
/db_xref="CDD:202232"
misc_feature 124146..125039
/gene="serS1"
/locus_tag="PPE_00092"
/note="Seryl-tRNA synthetase (SerRS) class II core
catalytic domain. SerRS is responsible for the attachment
of serine to the 3' OH group of ribose of the appropriate
tRNA. This domain It is primarily responsible for
ATP-dependent formation of the enzyme bound...; Region:
SerRS_core; cd00770"
/db_xref="CDD:29815"
misc_feature order(124248..124265,124272..124292,124302..124304,
124308..124310,124314..124316,124323..124325,
124362..124373,124377..124385,124389..124391,
124443..124448,124452..124454,124464..124466,
124491..124493,124503..124505,124515..124517,
124563..124565,124626..124628,125034..125039)
/gene="serS1"
/locus_tag="PPE_00092"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29815"
misc_feature order(124269..124271,124479..124481,124485..124487,
124572..124574,124578..124580,124596..124598,
124605..124607,124614..124616,124620..124622,
124629..124631,124635..124637,124641..124643,
124833..124844,124935..124937,124941..124943,
124959..124961)
/gene="serS1"
/locus_tag="PPE_00092"
/note="active site"
/db_xref="CDD:29815"
misc_feature 124362..124385
/gene="serS1"
/locus_tag="PPE_00092"
/note="motif 1; other site"
/db_xref="CDD:29815"
misc_feature 124569..124580
/gene="serS1"
/locus_tag="PPE_00092"
/note="motif 2; other site"
/db_xref="CDD:29815"
misc_feature order(124944..124952,124959..124961)
/gene="serS1"
/locus_tag="PPE_00092"
/note="motif 3; other site"
/db_xref="CDD:29815"
gene 125161..125249
/locus_tag="PPE_00093"
/db_xref="GeneID:9772852"
tRNA 125161..125249
/locus_tag="PPE_00093"
/product="tRNA-Ser"
/db_xref="GeneID:9772852"
gene 125394..125735
/locus_tag="PPE_00094"
/db_xref="GeneID:9772853"
CDS 125394..125735
/locus_tag="PPE_00094"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868530.1"
/db_xref="GI:308066925"
/db_xref="GeneID:9772853"
/translation="MNREMTVDQQKLVEAWQEQLPILLNSGDKSQVQADEANNRAIRI
HIEVEGRQMYSFDFACTYVDSREVQVSLVDVERDGQSVDERTDIIQQLVSDYTRHIHQ
CAQTLQSLTHS"
gene complement(126017..126361)
/locus_tag="PPE_00095"
/db_xref="GeneID:9772854"
CDS complement(126017..126361)
/locus_tag="PPE_00095"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868531.1"
/db_xref="GI:308066926"
/db_xref="GeneID:9772854"
/translation="MCRFSPLVINPFFYANKKIHTLYFNSYSQTAKHLLENFLTISTK
TPWLSNQGVLHYAIYFRRKVCLLMSLLYYGDPRDSAVSPSWNRITAPADDYAHAFRYF
HQNPVLRGQEWL"
gene 126361..127437
/locus_tag="PPE_00096"
/db_xref="GeneID:9772855"
CDS 126361..127437
/locus_tag="PPE_00096"
/note="PrositeMatches:PS00013"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868532.1"
/db_xref="GI:308066927"
/db_xref="GeneID:9772855"
/translation="MSKKLSVLVLTMVLLLTVALVGCSKKLEPKEAVTTGTANAMKLN
SYESKSQFTIKELTITSASVPSEQSAMVTSMLKNADITLDGVYQKEPFQSEMTLGIHL
KGDLSTSFTIPMVMTKDKLYVKIPNIPFYPLPQDVVGKFLIIDPQELAKQSGQEFNPA
AMDQEKSQKFANEVIAAIMNEYDQATYFFDIDPKDAKLPQGVEAKQVVQFKITNDNVK
QAVDTFVTKAVPKAIDIMSKDEYISLFQLKKEDLTAAKLAVETNTSDFRKKLDELKNY
LTVKQFDINTALNKDNIPVYQDLNANVEMNDPATKDNVKLSVTGYTQYSKINAKAAFK
VGIPTGDQVLTMEQLQQKMQTVAP"
gene complement(127525..128091)
/locus_tag="PPE_00097"
/db_xref="GeneID:9772856"
CDS complement(127525..128091)
/locus_tag="PPE_00097"
/EC_number="2.3.1.128"
/note="COGMatches:COG1670; PfamMatches:PF00583;
go_fucntion: N-acetyltransferase activity (GO:0008080)"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_003868533.1"
/db_xref="GI:308066928"
/db_xref="GeneID:9772856"
/translation="MPMSLYNTPQGIFLRPFSLADSEALLALRHRNRDSHAPYEPLYE
DSFFTLEKQQDYIRQRLRQAEEDRGYTFGIFLLKEERLIGYVSISNLVRGVGQSADIG
YMMDHHEQGKGHMTAALKLIIQYAFRALSLHRLQAGTLLHNDRSQRVLKKCGFQPEGI
ARKLVQIQGTWQDHQMFGLLAEDDVWQT"
misc_feature complement(127543..128058)
/locus_tag="PPE_00097"
/note="Acetyltransferases, including N-acetylases of
ribosomal proteins [Translation, ribosomal structure and
biogenesis]; Region: RimL; COG1670"
/db_xref="CDD:31856"
misc_feature complement(127570..127998)
/locus_tag="PPE_00097"
/note="N-Acyltransferase superfamily: Various enyzmes that
characteristicly catalyze the transfer of an acyl group to
a substrate; Region: NAT_SF; cl00357"
/db_xref="CDD:213096"
gene complement(128152..128643)
/locus_tag="PPE_00098"
/db_xref="GeneID:9772857"
CDS complement(128152..128643)
/locus_tag="PPE_00098"
/note="COGMatches:COG0590; PfamMatches:PF00383;
PrositeMatches:PS00903; go_fucntion: hydrolase activity
(GO:0016787)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868534.1"
/db_xref="GI:308066929"
/db_xref="GeneID:9772857"
/translation="MDHAYWMKEAIQEAYKAEALGEVPIGAVIVKDNEIIGRGYNLRE
TDADPTAHAEMVAIRQASEHLGAWRLLDCRLYVTLEPCPMCAGAIVQSRVPHLIYGTT
DPKAGCAGTLMNLLQEPRFNHCTEVNSGVLQEECASLLTSFFRNLRQKRAAAKLSPPP
SSS"
misc_feature complement(128302..128625)
/locus_tag="PPE_00098"
/note="Nucleoside deaminases include adenosine, guanine
and cytosine deaminases. These enzymes are Zn dependent
and catalyze the deamination of nucleosides. The zinc ion
in the active site plays a central role in the proposed
catalytic mechanism, activating a...; Region:
nucleoside_deaminase; cd01285"
/db_xref="CDD:29828"
misc_feature complement(order(128389..128391,128398..128400,
128482..128490,128521..128523,128569..128571))
/locus_tag="PPE_00098"
/note="nucleoside/Zn binding site; other site"
/db_xref="CDD:29828"
misc_feature complement(order(128368..128373,128380..128385,
128392..128397,128467..128469,128479..128481,
128494..128496))
/locus_tag="PPE_00098"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29828"
misc_feature complement(order(128389..128391,128398..128403,
128482..128490))
/locus_tag="PPE_00098"
/note="catalytic motif [active]"
/db_xref="CDD:29828"
gene 128981..131257
/locus_tag="PPE_00099"
/db_xref="GeneID:9772858"
CDS 128981..131257
/locus_tag="PPE_00099"
/EC_number="2.7.3.-"
/note="COGMatches:COG0642; PfamMatches:PF00672, PF00989,
PF00512, PF02518; PrositeMatches:PS50885, PS50112,
PS50113, PS50109; go_component: membrane (GO:0016020),
go_process: signal transduction (GO:0007165), go_fucntion:
ATP binding (GO:0005524)"
/codon_start=1
/transl_table=11
/product="signal transduction histidine kinase"
/protein_id="YP_003868535.1"
/db_xref="GI:308066930"
/db_xref="GeneID:9772858"
/translation="MSIKIRITIILSGSVLFILLLNIALNYYTTHENLRSDSETKMVL
TAKIIGGAIEQTQHSWEAVDKQLGYNLWLSATLAANQLDPDIRNIQQEQLQQIATLHR
DINISLMIREGQGYKVVKSSDPKEVTPSDPLTGHWKNAVDQLYEHGQAAMAQGQKLDH
FWTGSFDYTGSDSSHINKWGFYYDQKRNYLIRISFQDTSVQDFITILSPDEIVKQTQQ
VDYRIMEITGINPATFGGASMDKNGNDSKYYYMYNKPIQFGTYQLTRVKEDRLAVSRA
ILSGESIVQDCYIKGERVLVSYIPFYPANREAYVIRIVMNYDTITSVISKQLISLIAI
SIVLLEVVIIGSYVLASLFVRPIQSILEKVNEMADGHFDTRLEIKGGHELAQLGERIN
AMAYNLGMYTRRLEQMYEENRSVKEHLESVINQTADAIHVTDEEDRVVRVNHAFEALY
GWTKKELVGRKLEFVPPQQQEEYEFQKKSLLQGESIVSSESLRMRKDGSTVEISMSTS
PILDEEGQILGFICVSRDITGRNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRG
FLQLQQQNQVLNMKHNDIMMSELDRINLIVSEFLILAKPQAVHFQKKDVRYIVSDVIS
LLDSQAHLLGIIFNLQVTDEPALVYAEENQLKQVFINLLKNSMEAMSKGGIITIHLFL
EGESVKIFIRDQGTGIPAEMLSKLGEPFFTNKETGTGLGLMVSQRIIQSHKGTLDIES
TEGEGTTALVQLPIAKPE"
misc_feature 130040..130174
/locus_tag="PPE_00099"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(130040..130042,130049..130054,130058..130063,
130070..130075,130079..130081,130127..130132,
130136..130141,130148..130153,130157..130162,
130169..130174)
/locus_tag="PPE_00099"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 130244..131248
/locus_tag="PPE_00099"
/note="Signal transduction histidine kinase, nitrogen
specific [Signal transduction mechanisms]; Region: NtrB;
COG3852"
/db_xref="CDD:33642"
misc_feature 130256..130561
/locus_tag="PPE_00099"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature order(130304..130306,130316..130318,130334..130336,
130370..130381,130457..130459,130472..130474)
/locus_tag="PPE_00099"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature order(130364..130366,130373..130375,130397..130399,
130406..130411,130493..130495,130499..130501)
/locus_tag="PPE_00099"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature 130619..130792
/locus_tag="PPE_00099"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(130625..130627,130637..130639,130649..130651,
130658..130660,130670..130672,130679..130681,
130733..130735,130742..130744,130754..130756,
130763..130765,130775..130777)
/locus_tag="PPE_00099"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 130643..130645
/locus_tag="PPE_00099"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 130943..131236
/locus_tag="PPE_00099"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(130961..130963,130973..130975,130982..130984,
131051..131053,131057..131059,131063..131065,
131069..131074,131135..131146,131192..131194,
131198..131200,131213..131218,131222..131224)
/locus_tag="PPE_00099"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 130973..130975
/locus_tag="PPE_00099"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(131063..131065,131069..131071,131135..131137,
131141..131143)
/locus_tag="PPE_00099"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 131309..132010
/locus_tag="PPE_00100"
/db_xref="GeneID:9772859"
CDS 131309..132010
/locus_tag="PPE_00100"
/EC_number="4.2.1.70"
/EC_number="5.4.99.-"
/note="COGMatches:COG1187; PfamMatches:PF01479, PF00849;
PrositeMatches:PS50889, PS01149; go_fucntion: RNA binding
(GO:0003723), go_process: RNA processing (GO:0006396)"
/codon_start=1
/transl_table=11
/product="ribosomal large subunit pseudouridine synthase
F"
/protein_id="YP_003868536.1"
/db_xref="GI:308066931"
/db_xref="GeneID:9772859"
/translation="MRINKFISETGFCSRREADKLVESGRVTINGEVAVLGSQAEEGD
DVRVNGKPLREKSDHVYIALNKPVGITSTTESHIRGNVVDFVGHPQRIFPIGRLDKDS
EGLILLTNDGDIVNKILRAEGKHEKEYIVTVDRPVIPSFVQGMSSGVKILGQRTLPCE
VTRVSEYVFRIILTEGKNRQIRRMCAAFGYEVKKLQRLRIMNIRLGSLQKGAWRNLTE
AEKLELGQMLDYTLS"
misc_feature 131309..131992
/locus_tag="PPE_00100"
/note="16S rRNA uridine-516 pseudouridylate synthase and
related pseudouridylate synthases [Translation, ribosomal
structure and biogenesis]; Region: RsuA; COG1187"
/db_xref="CDD:31380"
misc_feature 131309..131503
/locus_tag="PPE_00100"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(131312..131314,131348..131350,131354..131359,
131363..131368,131375..131380,131384..131386,
131405..131413,131414..131425,131429..131431)
/locus_tag="PPE_00100"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
misc_feature 131486..131968
/locus_tag="PPE_00100"
/note="Pseudouridine synthase, Escherichia coli RluF like;
Region: PseudoU_synth_RluF; cd02554"
/db_xref="CDD:211328"
misc_feature order(131594..131605,131852..131854)
/locus_tag="PPE_00100"
/note="probable active site [active]"
/db_xref="CDD:211328"
gene complement(132145..132972)
/locus_tag="PPE_00101"
/db_xref="GeneID:9772860"
CDS complement(132145..132972)
/locus_tag="PPE_00101"
/note="COGMatches:COG1360; PfamMatches:PF00691;
go_component: outer membrane (sensu Gram-negative
Bacteria) (GO:0009279)"
/codon_start=1
/transl_table=11
/product="chemotaxis protein MotB"
/protein_id="YP_003868537.1"
/db_xref="GI:308066932"
/db_xref="GeneID:9772860"
/translation="MSKKRHEPHEEHADESWLLPYSDLMTLLLALFIVLFGMSSLDAK
KFETMAQSLSAAFNGGTGVLDHSAANPSSQSMDMGKNKEQVSQPVKSKATSTSELQKQ
LAQREEEDLKKLKKQMDQYIQNNGLTPLLNTKLNQSQLMITISDNALFSSGQAEVKPE
ARKLAKSISSMLQQFPGYDVIVSGHTDNVPISNSQFPSNFDLSAKRSLNFLRILLLNP
DLDPTKFVSIGYGEYRPLASNQDGQGRSKNRRVEISVLRKYQNGTQVISPTSSSSEG"
misc_feature complement(132205..132972)
/locus_tag="PPE_00101"
/note="flagellar motor protein MotB; Reviewed; Region:
motB; PRK07734"
/db_xref="CDD:181095"
misc_feature complement(132799..132972)
/locus_tag="PPE_00101"
/note="Membrane MotB of proton-channel complex MotA/MotB;
Region: MotB_plug; pfam13677"
/db_xref="CDD:205853"
misc_feature complement(132208..132528)
/locus_tag="PPE_00101"
/note="Peptidoglycan binding domains similar to the
C-terminal domain of outer-membrane protein OmpA; Region:
OmpA_C-like; cd07185"
/db_xref="CDD:143586"
misc_feature complement(order(132226..132228,132238..132240,
132367..132369,132376..132381,132391..132393,
132412..132417,132514..132519))
/locus_tag="PPE_00101"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:143586"
gene complement(132965..133759)
/locus_tag="PPE_00102"
/db_xref="GeneID:9772861"
CDS complement(132965..133759)
/locus_tag="PPE_00102"
/note="COGMatches:COG1291; PfamMatches:PF01618;
PrositeMatches:PS01307; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="chemotaxis protein MotA"
/protein_id="YP_003868538.1"
/db_xref="GI:308066933"
/db_xref="GeneID:9772861"
/translation="MQISTIIGLVLGIMSLVVGMILKGAPVVNLVNNPAAYMIIFVGT
AASIFMAFPMAEIKRIPKLFKVIFTEQKLLDRKELIGTFTEWASITRREGLLALESKV
EEIDDPFMRGGMRMIIDGNDQEFVRDVLMEDINATEDRHRSGALIFSQAGMYAPTLGV
LGAVVGLIAALADLSDMEKLSHAIAAAFIATLLGIFTGYVLWHPMSNKLKRLSKKEVE
LKLMMVEGLLSIQSGISTIAISQKLTIFLTPTERATMTQKDGDSSE"
misc_feature complement(132977..133759)
/locus_tag="PPE_00102"
/note="flagellar motor protein MotA; Validated; Region:
PRK08124"
/db_xref="CDD:181238"
misc_feature complement(133019..133759)
/locus_tag="PPE_00102"
/note="MotA/TolQ/ExbB proton channel family; Region:
MotA_ExbB; cl00568"
/db_xref="CDD:212236"
gene 133948..134241
/locus_tag="PPE_00103"
/db_xref="GeneID:9772862"
CDS 133948..134241
/locus_tag="PPE_00103"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868539.1"
/db_xref="GI:308066934"
/db_xref="GeneID:9772862"
/translation="MGVKHGREYEQILNDLTEAVGRIPDSYEFFEMEAEDWDRLDPAG
RQEVNEALAEDLFYALGTEPTITVGSGVVIYEPEQHRIYVLIGDEELTSVPLI"
gene 134359..134658
/locus_tag="PPE_00104"
/db_xref="GeneID:9772863"
CDS 134359..134658
/locus_tag="PPE_00104"
/EC_number="4.2.1.96"
/note="COGMatches:COG2154; PfamMatches:PF01329"
/codon_start=1
/transl_table=11
/product="Pterin-4a-carbinolamine dehydratase"
/protein_id="YP_003868540.1"
/db_xref="GI:308066935"
/db_xref="GeneID:9772863"
/translation="MPFTQEEIEAHLEKLEGWELEEGRWIVRKYNFSSFMKGIAFVDE
VAAISEAFNHHPFITIDYKTVTLRLTSWDDGGIMAVDIKEAQQYNEAFEKMRSSH"
misc_feature 134428..134631
/locus_tag="PPE_00104"
/note="PCD_DCoH: The bifunctional protein
pterin-4alpha-carbinolamine dehydratase (PCD), also known
as DCoH (dimerization cofactor of hepatocyte nuclear
factor-1), is both a transcription activator and a
metabolic enzyme. DCoH stimulates gene expression by...;
Region: PCD_DCoH; cd00488"
/db_xref="CDD:48348"
misc_feature order(134461..134463,134473..134475,134521..134523,
134530..134532,134572..134574)
/locus_tag="PPE_00104"
/note="aromatic arch; other site"
/db_xref="CDD:48348"
misc_feature order(134461..134463,134473..134475,134485..134487,
134506..134508,134521..134544)
/locus_tag="PPE_00104"
/note="DCoH dimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:48348"
misc_feature order(134464..134469,134485..134490,134497..134499,
134506..134511)
/locus_tag="PPE_00104"
/note="DCoH /HNF-1 dimer interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48348"
misc_feature order(134464..134466,134485..134490,134497..134499,
134509..134511)
/locus_tag="PPE_00104"
/note="DCoH tetramer interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48348"
misc_feature order(134515..134523,134566..134568,134572..134577)
/locus_tag="PPE_00104"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:48348"
gene complement(134737..135243)
/locus_tag="PPE_00105"
/db_xref="GeneID:9772864"
CDS complement(134737..135243)
/locus_tag="PPE_00105"
/note="PfamMatches:PF00583; go_fucntion:
N-acetyltransferase activity (GO:0008080)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868541.1"
/db_xref="GI:308066936"
/db_xref="GeneID:9772864"
/translation="MPASISNYRIVPMDEHQAAAICEWRYDPPYNIYGWLPWEQMKAL
EVEFGSPTLRQEQYVAVLDEENKLTGFAQYFPMIGVTRLGLGMHPERCGHGKGADFVR
AIAEEAQRRNPKNEIDLEVLTWNHRAIRAYKAAGFELTDTYERQTPDGKKPFYCMVYR
PEHQTQVL"
misc_feature complement(134830..135219)
/locus_tag="PPE_00105"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_3; pfam13302"
/db_xref="CDD:205482"
misc_feature complement(134830..135060)
/locus_tag="PPE_00105"
/note="Acetyltransferase (GNAT) family; Region:
Acetyltransf_1; pfam00583"
/db_xref="CDD:201324"
gene complement(135547..136047)
/locus_tag="PPE_00106"
/db_xref="GeneID:9772865"
CDS complement(135547..136047)
/locus_tag="PPE_00106"
/note="COGMatches:COG0791; PfamMatches:PF00877"
/codon_start=1
/transl_table=11
/product="cell wall-associated hydrolase
(invasion-associated protein)"
/protein_id="YP_003868542.1"
/db_xref="GI:308066937"
/db_xref="GeneID:9772865"
/translation="MKKKLTIAAMSLAIAFTSFTLGGGSAFADSKMDQVIQDAKGTNY
RSGGTTLEGFDCSGFTMYVFNKLGIKLPHQSGSQFKMGSSVSRDEMRPGDLVFFNTTG
RGISHVGIFVGEGKFAHSSTSRGVVVSSLNENYYANRYVGAKRIMSTDAYHSVASDIP
DDDNVE"
misc_feature complement(135613..135927)
/locus_tag="PPE_00106"
/note="NlpC/P60 family; Region: NLPC_P60; pfam00877"
/db_xref="CDD:189752"
gene complement(136467..137294)
/locus_tag="PPE_00107"
/db_xref="GeneID:9772866"
CDS complement(136467..137294)
/locus_tag="PPE_00107"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868543.1"
/db_xref="GI:308066938"
/db_xref="GeneID:9772866"
/translation="MRTIIKEGWALVRIRFYIVIILFLYRLLWGGFLYRLVQSAVIPL
LLRYPDQGQNELGQTLFWMESQIALMDSREVHVYLWILLGATVLRILITPFIRAGIYQ
SLHTDATEPQSLSFFKGMKRHGMSSLLYYTIELGLLLLPAFWVVPRLYPIVAGALQSP
SYLLHLLPYAMGWTAYGWFIRQCILYMQLGTVGGHAILSSLLAFFRQLLPAVGISLLL
GACVLLVFGLFGTVAMIWTGMLALILQQSYHFVTSLVRLWHISSQYRLWHTDISSRS"
gene complement(137306..139318)
/locus_tag="PPE_00108"
/db_xref="GeneID:9772867"
CDS complement(137306..139318)
/locus_tag="PPE_00108"
/note="COGMatches:COG0308; PrositeMatches:PS00142"
/codon_start=1
/transl_table=11
/product="aminopeptidase N"
/protein_id="YP_003868544.1"
/db_xref="GI:308066939"
/db_xref="GeneID:9772867"
/translation="MTPARTKIVLLSTLALGLLAGTLWFAWQPQSQSDPQSIGQPPYG
SLSESALAPNMGKPLGANILPDLPKNPPQPATEILSKRVVEYHIDVSLEKGQVLRGTE
TLTWKHPGKKTVNDLYLHLYPNAFSSMETTFMKESGGKLRGDTMPKDGFGSMTLTELK
TEDGLSLMHRIQYVQPDDGNAGDRSLMKVRLPKPVRGGEEITLYMKFEVKLPAIFARM
GTTDDFVMAGQWFPKLSVYETAGQRGRAEEGWNLHQYHGNSEFYADFGIYSVRIRVPE
THIVAATGFPTRGAVRQNGQKIYQFYADDVHDFAWSASPNFVTVEEPFSSAEVPGVKI
KLYLDPSHKELKGRYMSAAKAALSYYSKWYGPYPYSTLSIVVPPKSGNGAGGMEYPTL
ITAAAAGNLNPGYSLERTLVHEIGHQYFYGMVANNEFEEPWLDEGFTSYAEERLMEQE
YGLTPNLPLQSGQVASPQPLNRESWKYGSAAEYAQNAYSRGKLVLRGIERQVGMKKMD
RIMRTYVQTYRFKHPSSQDFQRIVERVTGRSWSHYFEQYVYDGQMADFSVDHITNHKL
ENGYEAVVTVSKKGADYPKIPVQFTFKDGTTIFKAWDGASKSTTFRIKSTSPVSYVTL
DPLYTIALENKHINNNLKAELDEKQQTRWNVSVTKLLETLLGSLSW"
misc_feature complement(137675..139063)
/locus_tag="PPE_00108"
/note="Peptidase M1 family containing bacterial
Aminopeptidase N; Region: M1_APN_5; cd09604"
/db_xref="CDD:189011"
misc_feature complement(order(138011..138013,138068..138070,
138080..138082))
/locus_tag="PPE_00108"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:189011"
gene 139443..139949
/locus_tag="PPE_00109"
/db_xref="GeneID:9772868"
CDS 139443..139949
/locus_tag="PPE_00109"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868545.1"
/db_xref="GI:308066940"
/db_xref="GeneID:9772868"
/translation="MSENQPDGKKQIALNIVSGKSKHKGFGAGSIDLNSMSPVIIDRG
EAKIDIGAMHAKSKVERGIKFSTNKEEVPNGRQVWLVWVAVDRTPEGRMYGGATACEM
LIDDEAKRGWKILADHVNRMDYALKRRFMLDDLGSEDRAALKSLLISHNEEWWDASPE
ELKQALEG"
misc_feature 139467..139943
/locus_tag="PPE_00109"
/note="YwhD family; Region: YwhD; pfam08741"
/db_xref="CDD:149715"
gene 140774..141280
/locus_tag="PPE_00110"
/db_xref="GeneID:9772869"
CDS 140774..141280
/locus_tag="PPE_00110"
/EC_number="2.7.1.69"
/EC_number="2.7.1.-"
/note="COGMatches:COG2190; PfamMatches:PF00358;
PrositeMatches:PS00371, PS51093; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="PTS system glucose-specific transporter subunit
IIA"
/protein_id="YP_003868546.1"
/db_xref="GI:308066941"
/db_xref="GeneID:9772869"
/translation="MFKWLKKKAAPHIEEFDIVAPIKGKVVSLEEVPDPAFSTKAMGE
GIAIHPTEGKVTAPFTGKVVHVMEKSKHALIIEHESGVQILIHVGINTVSLKGQGFNP
HVQTGDNIKAGQLLMEFDLDAIQQGGLPVITPVIVPDGQEMISHVEILEGTSASSEVP
VLRVHLKA"
misc_feature 140810..141184
/locus_tag="PPE_00110"
/note="PTS_IIA, PTS system, glucose/sucrose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_glc; cl00162"
/db_xref="CDD:185805"
misc_feature order(140873..140884,140894..140899,140963..140968,
140972..140974,140978..140980,140996..141004,
141020..141028,141032..141034,141044..141046,
141050..141055,141089..141091)
/locus_tag="PPE_00110"
/note="HPr interaction site; other site"
/db_xref="CDD:29265"
misc_feature order(140873..140875,140879..140884,140888..140890,
140894..140899,140966..140968,140972..140974,
140987..140989,141026..141028,141032..141034,
141044..141046,141050..141055,141059..141061)
/locus_tag="PPE_00110"
/note="glycerol kinase (GK) interaction site [polypeptide
binding]; other site"
/db_xref="CDD:29265"
misc_feature order(140981..140983,140987..140989,141032..141034,
141038..141040)
/locus_tag="PPE_00110"
/note="active site"
/db_xref="CDD:29265"
misc_feature 141032..141034
/locus_tag="PPE_00110"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29265"
gene complement(141380..142129)
/locus_tag="PPE_00111"
/db_xref="GeneID:9772870"
CDS complement(141380..142129)
/locus_tag="PPE_00111"
/note="COGMatches:COG0491; PfamMatches:PF00753"
/codon_start=1
/transl_table=11
/product="Zn-dependent hydrolase"
/protein_id="YP_003868547.1"
/db_xref="GI:308066942"
/db_xref="GeneID:9772870"
/translation="MQLDKGIHILQVSANIMGSIENIYPTLMWDEDNMILVDTAYPGQ
LSLLHEAILGTGLAIHKLTSILITHQDLDHIGSLADIIRASSSPVQVLSSSIEKPYIQ
GEKQLIKLTPEAIDQAVSSMPESVPVEWRHAFRRTLENPPKAIVNSTIVAGEELPFCG
GIVVIDTAGHTPGHLSFYHKSSQTLIAGDALRVVSSKLLAPDPQYCCDFNMAKESLKN
LLPYDIKKVICFHGGLYEGNCNQRISEICES"
misc_feature complement(141386..142111)
/locus_tag="PPE_00111"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
misc_feature complement(141437..142054)
/locus_tag="PPE_00111"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
gene 142175..142816
/locus_tag="PPE_00112"
/db_xref="GeneID:9772871"
CDS 142175..142816
/locus_tag="PPE_00112"
/note="COGMatches:COG0406; PfamMatches:PF00300"
/codon_start=1
/transl_table=11
/product="fructose-2,6-bisphosphatase"
/protein_id="YP_003868548.1"
/db_xref="GI:308066943"
/db_xref="GeneID:9772871"
/translation="MKSKCVNLHYNTKIIICKCAEYYICVTVRSDDVKKIYFVRHAQA
TGQEPDARLTDEGTRQAEQLADFMENVGVEYIVSSPWKRAVRTIQPLAERRQLQVYTD
PRLQERVLSCEHLDHWLDVLEQTYLDEDLKLEGGESSREAVDRGIQLVQELIERAEKT
VIIVTHGALLSLLIRHYDPRFGFEDWKKLSNPDVYLLELKEAEAKIHRVWNTG"
misc_feature 142277..142777
/locus_tag="PPE_00112"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature order(142292..142297,142421..142423,142670..142675)
/locus_tag="PPE_00112"
/note="catalytic core [active]"
/db_xref="CDD:132718"
gene 142878..143105
/locus_tag="PPE_00113"
/db_xref="GeneID:9772872"
CDS 142878..143105
/locus_tag="PPE_00113"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868549.1"
/db_xref="GI:308066944"
/db_xref="GeneID:9772872"
/translation="MQTVGGDILRTWLDSGWHYYNRIGEDIIDFTRSQFSIPPQYQDV
YSNREEAFSDTSAEQYAALNRRLGGFLNEEE"
gene complement(143601..144413)
/locus_tag="PPE_00114"
/db_xref="GeneID:9772873"
CDS complement(143601..144413)
/locus_tag="PPE_00114"
/note="COGMatches:COG1357; PfamMatches:PF00805"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868550.1"
/db_xref="GI:308066945"
/db_xref="GeneID:9772873"
/translation="MYSANCEQCFGLCCVALPYAKSADFAFNKDGGTPCQNLNEDYRC
NIHKNLRNNGLRGCTVYDCFGAGQKISQVTYNGKSWRDDPAIAEEMFSIFPIMQQLHE
MLYYLNEALNLKETHPIYTDLQKTMAKIEQLTNQDPKSLIVLHVPTHRTLVNDLLLQT
SELVREKGKKNLEHHKYSKKIRSRDLIGANLRGANLRGANLRGFLLIAADLREADMRM
TDLIGADFRDADLSGANLEGSIFLTQAQLNSAKGNCKTKLPPSLSIPGHWLH"
misc_feature complement(143610..144383)
/locus_tag="PPE_00114"
/note="Pentapeptide repeats containing protein [Function
unknown]; Region: COG1357"
/db_xref="CDD:31548"
misc_feature complement(143700..143849)
/locus_tag="PPE_00114"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
gene complement(144531..144923)
/locus_tag="PPE_00115"
/db_xref="GeneID:9772874"
CDS complement(144531..144923)
/locus_tag="PPE_00115"
/note="COGMatches:COG3865; PfamMatches:PF06983"
/codon_start=1
/transl_table=11
/product="3-demethylubiquinone-9 3-methyltransferase"
/protein_id="YP_003868551.1"
/db_xref="GI:308066946"
/db_xref="GeneID:9772874"
/translation="MHDSSPKITTFFMFSGQAEEAMQYYTSVFKPSGIMSIFHQEDGT
VLHAVFNLKGQTFMAIDYNHQDKHPFTPALSLFVTCDSEEEIHSVFDQLSQEGRVLMP
LEASPVSQQFGWVEDKYGVSWQLNLAKD"
misc_feature complement(144549..144905)
/locus_tag="PPE_00115"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature complement(144546..144902)
/locus_tag="PPE_00115"
/note="Escherichia coli PhnB and similar proteins; the E.
coli phnB gene is found next to an operon involved in the
cleavage of carbon-phosphorus bonds in unactivated
alkylphosphonates; Region: PhnB_like; cd06588"
/db_xref="CDD:176658"
misc_feature complement(order(144552..144554,144582..144584,
144669..144671,144681..144683,144687..144704,
144750..144752,144759..144764,144837..144839,
144885..144902))
/locus_tag="PPE_00115"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176658"
gene 145043..146092
/locus_tag="PPE_00116"
/db_xref="GeneID:9772875"
CDS 145043..146092
/locus_tag="PPE_00116"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868552.1"
/db_xref="GI:308066947"
/db_xref="GeneID:9772875"
/translation="MMDATTRLIDMFGSAKKLDASIISAYTDVVAQYGTVEDAWELYR
LFVEDPHHYIRRLLLQPIMRCGDVTLAQDMYERYVRNQASPEHIPDGVLYALGYLGYV
EAAADLVALVNGPYGAVSVDACLGLVHLPCEPYREKLAAELEKALDQNLFNEFLPLLS
FKCTTEDMISRLVHWGEQHASVDCNAGIIAGIALFGEGQKETIRSILWNPFWEAHGTA
TGSCVWSYFAMQHVGLTFRELVQDIKSYDASKEDVQALEYRLDVLHEMLELKLSYTAR
PIRFARSNEESFGQLYSDLFSWSTEHHDDSLMGWMTERLGYRHQLLDQYHELRKRVEI
KMVHEIELEHVQKES"
gene complement(146282..146461)
/locus_tag="PPE_00117"
/db_xref="GeneID:9772876"
CDS complement(146282..146461)
/locus_tag="PPE_00117"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868553.1"
/db_xref="GI:308066948"
/db_xref="GeneID:9772876"
/translation="MVLEFAAHLADRMAPAAAVRTAVVRTAVVKMALVLVVDLSGMGT
NPAYQEIVGSKDLTA"
gene 146530..146706
/locus_tag="PPE_00118"
/db_xref="GeneID:9772877"
CDS 146530..146706
/locus_tag="PPE_00118"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868554.1"
/db_xref="GI:308066949"
/db_xref="GeneID:9772877"
/translation="MFGCLYRNTFVWLTNGERFWMYPVFIGRTSVAGFRWSGRFWFYY
GVDTNRIESFSCFW"
gene complement(146854..148911)
/locus_tag="PPE_00119"
/db_xref="GeneID:9772878"
CDS complement(146854..148911)
/locus_tag="PPE_00119"
/EC_number="2.4.2.-"
/EC_number="3.4.-.-"
/note="COGMatches:COG0744; PfamMatches:PF00912, PF00905;
PrositeMatches:PS00013; go_component: cell wall (sensu
Bacteria) (GO:0009274), go_process: cell wall biosynthesis
(sensu Bacteria) (GO:0009273)"
/codon_start=1
/transl_table=11
/product="membrane carboxypeptidase"
/protein_id="YP_003868555.1"
/db_xref="GI:308066950"
/db_xref="GeneID:9772878"
/translation="MTDTTGRPPKRKPLWLRCFQGLMSLTILTVIAACILLAYLYTTS
LPLADTDRNSRLLDSQGQVIATFSAGGKESIPVQLDHISPDLIAATLAVEDRKFYDHF
GFDFKGLGRAVIVNLTRWDMSQGASTLTQQLARNLYLSHEKTWTRKAKEAIYTAQLEM
KYTKNELLQMYLNEIYYGHGAYGIEAASQMYFGKSAKDLDLAESALLAGIPKGPTYYS
PYNHMKNAKDRQKIVLDSMALTGKITPAEATKAYEEMLALRPENQRRTVEAAPWFRDY
VRQLATHQLGISEGVLEHGGLSIYTTLDMHMQQAAEAAVNEGMKSSNGLETALISMDP
RNGHIKAMVGGTNYVGNQYNHALATTRQPGSAFKPIMYLSALDSGELTSTSKFESRPT
LFHYDNNRKTYKPKNFGDKYLGEIDLRRAIAASDNIYAVSTILKVGTDKVMDLASKMG
ITSELKPVPSLALGVSPVSPFEMASAFSVIGSGGQKVAPVAVLRITDAAGRSLYEAPR
AAPVQVVKPASAYVLTRLMEGVFEEGGTGNRVAKLIKRPVAGKSGTTNTDAWMVGFTP
ELSTAVWVGYDKGKDISTQDARRAAPIFAQYTEKALENVPPKIFPIPDGVVSAYIDPA
SGKLAAPDSPDKRLEVFVSGTEPKETLSGQDNPPASTPTDQAERQAEKKSWWGNFKRW
WMD"
misc_feature complement(148198..148731)
/locus_tag="PPE_00119"
/note="Transglycosylase; Region: Transgly; pfam00912"
/db_xref="CDD:201501"
misc_feature complement(147100..148686)
/locus_tag="PPE_00119"
/note="penicillin-binding protein, 1A family; Region:
PBP_1a_fam; TIGR02074"
/db_xref="CDD:211713"
misc_feature complement(147124..147918)
/locus_tag="PPE_00119"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl01009"
/db_xref="CDD:207282"
gene 149143..150021
/gene="speE"
/locus_tag="PPE_00120"
/db_xref="GeneID:9772879"
CDS 149143..150021
/gene="speE"
/locus_tag="PPE_00120"
/EC_number="2.5.1.16"
/note="TIGRFAMsMatches:TIGR00417; COGMatches:COG0421;
PfamMatches:PF01564; PrositeMatches:PS01330, PS51006;
go_fucntion: catalytic activity (GO:0003824)"
/codon_start=1
/transl_table=11
/product="spermidine synthase (Putrescine
aminopropyltransferase) (SPDSY)"
/protein_id="YP_003868556.1"
/db_xref="GI:308066951"
/db_xref="GeneID:9772879"
/translation="MLPDCRTHTLIRKKVEMMDLWFTEKQTPSFGITAKIKQTYVSEK
TDFQDLAMIETEEFGNMLVLDGMVMTTVKDEFVYHEMVAHPALNTHPNPKKVLVVGGG
DGGVIREVIKHPEVEKAVLVEIDGKVIEYSKKYLPEIAGKLDEPNVEVLVNDGYMHII
EHKNEYDVIMVDSTEPVGPAAPLFERGFYQGIFEALKEDGIFVAQTDNPWFKADLIQK
VNKDVKEIFPIVRVYGANIPTYPSGLWTFTLGSKKYDPLEVDETRIPEMDTRYYSPRL
HKAAFVLPKFVENLTK"
misc_feature 149191..150018
/gene="speE"
/locus_tag="PPE_00120"
/note="spermidine synthase; Provisional; Region: PRK00811"
/db_xref="CDD:179134"
misc_feature 149491..149757
/gene="speE"
/locus_tag="PPE_00120"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
gene 150244..151581
/locus_tag="PPE_00121"
/db_xref="GeneID:9772880"
CDS 150244..151581
/locus_tag="PPE_00121"
/note="COGMatches:COG0477; PfamMatches:PF07690"
/codon_start=1
/transl_table=11
/product="Permease of the major facilitator superfamily"
/protein_id="YP_003868557.1"
/db_xref="GI:308066952"
/db_xref="GeneID:9772880"
/translation="MKYINRRCTKEGETFLIRRSFYYLWGSQTISNVADIIYMLSVVV
LVFSSSNSLMTTILIPLFRLSAQVLSGLVAPIVLGRFRLTRVLLFSQFGQFVIFTLLL
LYLWIVPEQRSFLFIFVMVFGMSFLDGWTNPARNALVPRLATGEGLMRANGMVAVSDQ
VVRCAGWALSGIIVAWLGSLNTLVIASCCYLVAVTVTSFVRDPLDQKELSLEASDSST
NLVEPAKGKEKGSHWKELGEGWKIIWHNRRIRSLMIVDSVDSIGGVSWLGVFILAYVS
QVLHRDASWWGFMNASFFSGTILGGLIVVGLVKRLQKNSFLYMLGALLVYVLITIVFA
LNTIPVAALILFAVSGLPVQMAGIIRRTLLQTSAPAAQLPKVMAGIDVLTNLAFGLSL
LFMGWYADRFGMVQVYLLAAVMTTIAVLIGWLYRRDFQESEQMDHPTATGAGI"
misc_feature 150304..151452
/locus_tag="PPE_00121"
/note="H+ Antiporter protein; Region: 2A0121; TIGR00900"
/db_xref="CDD:162098"
misc_feature 150439..151521
/locus_tag="PPE_00121"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(150442..150444,150454..150459,150463..150468,
150625..150630,150637..150642,150649..150654,
150661..150663,150697..150702,150709..150714,
150730..150732,151021..151023,151030..151035,
151042..151044,151048..151050,151057..151059,
151099..151101,151111..151113,151123..151125,
151132..151134,151144..151146,151291..151293,
151300..151305,151312..151314,151324..151329,
151336..151338,151369..151374,151381..151386,
151393..151398,151405..151407)
/locus_tag="PPE_00121"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(151773..153512)
/locus_tag="PPE_00122"
/db_xref="GeneID:9772881"
CDS complement(151773..153512)
/locus_tag="PPE_00122"
/note="COGMatches:COG1132; PfamMatches:PF00664, PF00005;
PrositeMatches:PS00211, PS50893, PS50929; go_component:
integral to membrane (GO:0016021), go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_003868558.1"
/db_xref="GI:308066953"
/db_xref="GeneID:9772881"
/translation="MSGKETWRRLLTYVGQYKTTTCWVIVSAVLSVLASLIGPYMIGQ
AIDHMVDKGAVDFKGIAQILAGLGIVYVVGSLFSWLLTYLTNRIAFQTVNDMRRELFD
HFNILPLSFHDTHPQGDSISRFVNDMDAVSDGLLQGFSTLITGIITIIGSIVLMLYIS
PIMTLVVLVSAPITYGVARFITTRSQRMFREQAKILGSLNGYVEEMIGGQRVVTAFHY
ENRSLEEFSARNEQLYQAGVKSQFYGSLSNPSTRLVNNMTFSVTAMIGCISIILGVIS
VGGLSSFLIYTNLFAKPFNEITGVLTQFQAATASAQRIFAILDSPPEQSEESNAVQLE
RSKGTILFDHVKFSYNPERTLITNFSLEVKPGTRVAIVGQTGAGKTTLVNLLMRFYDV
DSGSISIDGVNINDMSRDSLRTNFGMVLQDTWLFSGTIRDNIAYGKPEATDEEVIAAA
TAANAHSFIKRLPHGYDTVISGSGDSLSQGQKQLLTIARVILVDPPMLILDEATSSID
TLTEARIQKAFMKMIAGRTSFVIAHRLSTIREADLILYMKKGDVVESGTHEGLLASGG
HYASLYNSQFTTA"
misc_feature complement(151782..153398)
/locus_tag="PPE_00122"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature complement(152736..153398)
/locus_tag="PPE_00122"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:201380"
misc_feature complement(151815..152501)
/locus_tag="PPE_00122"
/note="Glucan exporter ATP-binding protein. In A.
tumefaciens cyclic beta-1, 2-glucan must be transported
into the periplasmic space to exert its action as a
virluence factor. This subfamily belongs to the MRP-like
family and is involved in drug, peptide, and...; Region:
ABCC_Glucan_exporter_like; cd03254"
/db_xref="CDD:73013"
misc_feature complement(152373..152396)
/locus_tag="PPE_00122"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73013"
misc_feature complement(order(151914..151916,152007..152012,
152250..152252,152370..152378,152382..152387))
/locus_tag="PPE_00122"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73013"
misc_feature complement(152250..152261)
/locus_tag="PPE_00122"
/note="Q-loop/lid; other site"
/db_xref="CDD:73013"
misc_feature complement(152055..152084)
/locus_tag="PPE_00122"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73013"
misc_feature complement(152007..152024)
/locus_tag="PPE_00122"
/note="Walker B; other site"
/db_xref="CDD:73013"
misc_feature complement(151989..152000)
/locus_tag="PPE_00122"
/note="D-loop; other site"
/db_xref="CDD:73013"
misc_feature complement(151908..151928)
/locus_tag="PPE_00122"
/note="H-loop/switch region; other site"
/db_xref="CDD:73013"
gene complement(153509..155272)
/locus_tag="PPE_00123"
/db_xref="GeneID:9772882"
CDS complement(153509..155272)
/locus_tag="PPE_00123"
/note="COGMatches:COG1132; PfamMatches:PF00664, PF00005;
PrositeMatches:PS00211, PS50893, PS50929; go_component:
integral to membrane (GO:0016021), go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="multidrug ABC transporter protein"
/protein_id="YP_003868559.1"
/db_xref="GI:308066954"
/db_xref="GeneID:9772882"
/translation="MVYLLKFAVFLKPYKKETILGPLFKLIEAILELLLPTMVALMIN
HGVSKGDTHYVWQMGLLMLLMTILGFGSSLVCQFYAARASQGFGTTLRNTMFKHISSF
SYADLDKFGTPSLINRITNDVNQLQTAVAMLIRLVIRAPFICIGAIIMSMILDFRLAL
VLLAATPVLALILYVVITKASPLYRRYQKKLDNIALVLSENLTGVRVIRAFAKRGAER
VKFNTASDDLTQTAIRVGRISALLSPATLLVVNGAIIAILWIGGIHIQYGSLTQGEII
AFINYITQILLALIVVTNLIILFTKAATSAARIQEVLDTQTSISDTTTTPTSIDREEA
SEHGAVPAISFDHVSFGYNKTGQLVLSDVVVNIYPGETVGIIGGTGSGKSTFVNLIPR
FYDAVEGRVQVDGIDVRQYKLEQLRQKIGIVPQKALLFTGTIADNIRWGHEHATDEEV
AQAAAIAQADEFISNLPEKFDAPITRGGLNLSGGQKQRLTIARAIVGNPQILILDDSS
SALDFATDAALRKSLRENSTSMTVLLVSQRVSSVQHADKIIVFDEGRIVGIGTHEQLM
SSSDVYQEINHSQLSTQEVDQ"
misc_feature complement(153536..155227)
/locus_tag="PPE_00123"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature complement(154406..155221)
/locus_tag="PPE_00123"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; cl00549"
/db_xref="CDD:207103"
misc_feature complement(153548..154246)
/locus_tag="PPE_00123"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(154121..154144)
/locus_tag="PPE_00123"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(153662..153664,153755..153760,
153998..154000,154118..154126,154130..154135))
/locus_tag="PPE_00123"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(153998..154009)
/locus_tag="PPE_00123"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(153803..153832)
/locus_tag="PPE_00123"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(153755..153772)
/locus_tag="PPE_00123"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(153737..153748)
/locus_tag="PPE_00123"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(153656..153676)
/locus_tag="PPE_00123"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 155416..156306
/locus_tag="PPE_00124"
/db_xref="GeneID:9772883"
CDS 155416..156306
/locus_tag="PPE_00124"
/note="COGMatches:COG0583; PfamMatches:PF00126, PF03466;
PrositeMatches:PS50931; go_process: regulation of
transcription, DNA-dependent (GO:0006355)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_003868560.1"
/db_xref="GI:308066955"
/db_xref="GeneID:9772883"
/translation="MELRHLKYFLAIAEAGQITAAAKKLQIAQPPLSQQLMQLEEELG
VKLVHRGSRSIQLTEAGIILQNRAKQILELTDATTREINDFALGMKGTLTIGTVSSSG
AALMKDRLSEFHKTYAGVKFEIHEGNTFMILDLLNKGIVEVGIVRTPFNTTDLGCRYA
SSEPMIAVMTEEHDWNPEQKTIPLSELKNRPLIVYRRFEQLIHDTCMKHGFEPNFFCK
NDDARTTLHWANEGLGIGMISRSALSLGSNNQLIVKEIMCEELHTRVAAVWLKDKYMS
SLASRFIESFSQASEEADLR"
misc_feature 155416..156303
/locus_tag="PPE_00124"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 155422..155598
/locus_tag="PPE_00124"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 155689..156267
/locus_tag="PPE_00124"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature order(155734..155739,155743..155748,155755..155757,
155767..155769,155773..155793,156061..156078,
156094..156099,156103..156108)
/locus_tag="PPE_00124"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 156399..156833
/locus_tag="PPE_00125"
/db_xref="GeneID:9772884"
CDS 156399..156833
/locus_tag="PPE_00125"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868561.1"
/db_xref="GI:308066956"
/db_xref="GeneID:9772884"
/translation="MEFEYMPHNAKVRIRLHSHHDGEDVVQELPGEAIVRGKHLYIRY
DEPQESPEGGTTRNTVKIGPDELKLIRHGEVQSEQSFALGRRLPGFYRSPYLNLNMSA
HTQKLDIRMDGFTGHVSWTYDLYVFEDFSGHFAISLHIQEEQ"
misc_feature 156429..156812
/locus_tag="PPE_00125"
/note="Domain of unknown function (DUF1934); Region:
DUF1934; pfam09148"
/db_xref="CDD:149996"
gene 156995..158515
/gene="argS1"
/locus_tag="PPE_00126"
/db_xref="GeneID:9772885"
CDS 156995..158515
/gene="argS1"
/locus_tag="PPE_00126"
/EC_number="6.1.1.19"
/note="TIGRFAMsMatches:TIGR00456; COGMatches:COG0018;
PfamMatches:PF03485, PF00750, PF05746;
PrositeMatches:PS00178; go_process: arginyl-tRNA
aminoacylation (GO:0006420)"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA synthetase"
/protein_id="YP_003868562.1"
/db_xref="GI:308066957"
/db_xref="GeneID:9772885"
/translation="MQLTRIAKKNPRQIAEDLIANMDLASASIESAEIAGPGFINFRL
NKSYLYAVIGQVQEQGADYGRIQEGAGKKVQIEFVSANPTGSLHLGHARGAAVGDALC
NVLDFAGYKVTREYYINDAGNQIYNMSRSIEARYLQELGQPAEMPEDGYHGEDIIGFA
KELVAEKGDSLLSMEPGDRAAYFRDYGLEKELNKIKRDLELFRVPFDSWFSETSLYEN
GEVLKALNELRDREEIYEKDGATWLNTTKYGDDKDRVLIKNDGTYTYLTPDIAYHRDK
YARGYDTIINIWGADHHGYIPRMKAAMEALGNDPDKLKVLIAQMVSLFQNGEKVKMSK
RTGKAVTMEDLMEEVGVDAIRYFFTMRSMDSHLDFDMDLAISTSNENPVFYVQYAHAR
ACSVYRQAEEQGIAVLPLAEVDLSKLTAEHEYDLLRKIGELPEEVSVAAANFAPHRMI
RYVYELASLFHSYYKAERVITEDAAQTQARLALFGAVRTTIANVLKLVGVSAPERM"
misc_feature 156995..158512
/gene="argS1"
/locus_tag="PPE_00126"
/note="arginyl-tRNA synthetase; Reviewed; Region: argS;
PRK01611"
/db_xref="CDD:179308"
misc_feature <156995..157126
/gene="argS1"
/locus_tag="PPE_00126"
/note="Arginyl tRNA synthetase N terminal dom; Region:
Arg_tRNA_synt_N; smart01016"
/db_xref="CDD:198084"
misc_feature 157211..158005
/gene="argS1"
/locus_tag="PPE_00126"
/note="catalytic core domain of arginyl-tRNA synthetases;
Region: ArgRS_core; cd00671"
/db_xref="CDD:185675"
misc_feature order(157223..157225,157232..157234,157238..157240,
157256..157258,157265..157267,157787..157789,
157799..157801,157868..157870,157877..157879)
/gene="argS1"
/locus_tag="PPE_00126"
/note="active site"
/db_xref="CDD:185675"
misc_feature 157256..157267
/gene="argS1"
/locus_tag="PPE_00126"
/note="HIGH motif; other site"
/db_xref="CDD:185675"
misc_feature 157988..157999
/gene="argS1"
/locus_tag="PPE_00126"
/note="KMSK motif region; other site"
/db_xref="CDD:185675"
misc_feature 158033..158512
/gene="argS1"
/locus_tag="PPE_00126"
/note="Anticodon-binding domain of arginyl tRNA
synthetases; Region: Anticodon_Ia_Arg; cd07956"
/db_xref="CDD:153410"
misc_feature order(158123..158131,158135..158137,158147..158149,
158156..158158,158165..158170,158177..158182,
158189..158191,158318..158320,158345..158347,
158366..158368,158378..158380,158384..158386,
158444..158446)
/gene="argS1"
/locus_tag="PPE_00126"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153410"
misc_feature order(158156..158158,158165..158170,158177..158182,
158189..158191,158384..158386,158393..158404,
158444..158446,158507..158512)
/gene="argS1"
/locus_tag="PPE_00126"
/note="anticodon binding site; other site"
/db_xref="CDD:153410"
gene complement(158627..159487)
/locus_tag="PPE_00127"
/db_xref="GeneID:9772886"
CDS complement(158627..159487)
/locus_tag="PPE_00127"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868563.1"
/db_xref="GI:308066958"
/db_xref="GeneID:9772886"
/translation="MKTDLRITKLMSVVTLSAVLLVTGWKGAEPVHAAANATPSYEVK
LLLDTAQVLHADGSLKSGIVNEFQISDNAQRLSVEYFDTNSLQLNDEGWNVRFRKKED
KKNYELTYKKRYTVTNGNIDAALTQANKEGFSASDDNYEAEVDWGYSKQTLSFSNDKK
TNASKGLALPSPDQALKQLQDNLPGKLQNWKNSNWGKQTLANSRVRGPVQVSKYEGSF
QGLDADVEIWPIRSANGSGTENIIEISFKTSDYNVAASNRTKLMNLLQSKGWLVPADS
LKTNLVLERY"
gene complement(159614..160507)
/locus_tag="PPE_00128"
/db_xref="GeneID:9772887"
CDS complement(159614..160507)
/locus_tag="PPE_00128"
/note="COGMatches:COG0583; PfamMatches:PF00126, PF03466;
PrositeMatches:PS50931; go_process: regulation of
transcription, DNA-dependent (GO:0006355)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_003868564.1"
/db_xref="GI:308066959"
/db_xref="GeneID:9772887"
/translation="MNLSLLKLHIVELLNKHHKITTVAELLGLKQPTVTFHMKNLERE
FGVKLFDTRMGKIILTDAGNALLHYATKINALAAEAERVVREFDTLRRGSIRIGASYV
PATYLLPAVLHRFAREHPGIHIALSVKTAPVIKDMLARHEIDLGIISAEPFQSPTLLS
ESLGEDELMLICSPTHPLANETDLTPELIASSSFVLHGKESSTRHVTDKWLERGGRRL
PSYLELDSLEAIKQAVMLGEHISFVSRIAVQSEVERGLLVVRPIPGQSVERYIYMVSN
KDRHRSALIHRFTEYLSWNQD"
misc_feature complement(159632..160498)
/locus_tag="PPE_00128"
/note="LysR transcriptional regulator; Provisional;
Region: rbcR; CHL00180"
/db_xref="CDD:177082"
misc_feature complement(160319..160486)
/locus_tag="PPE_00128"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(159632..160228)
/locus_tag="PPE_00128"
/note="C-terminal substrate binding domain of LysR-type
transcriptional regulator CysL, which activates the
transcription of the cysJI operon encoding sulfite
reductase, contains the type 2 periplasmic binding fold;
Region: PBP2_CysL_like; cd08420"
/db_xref="CDD:176112"
misc_feature complement(order(159800..159805,159809..159814,
159830..159847,160124..160144,160148..160150,
160160..160162,160169..160174,160178..160183))
/locus_tag="PPE_00128"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176112"
gene 160710..161708
/locus_tag="PPE_00129"
/db_xref="GeneID:9772888"
CDS 160710..161708
/locus_tag="PPE_00129"
/EC_number="3.6.3.30"
/note="COGMatches:COG3842; PfamMatches:PF00005;
PrositeMatches:PS00211, PS50893; go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="ferric cations import ATP-binding protein fbpC
1"
/protein_id="YP_003868565.1"
/db_xref="GI:308066960"
/db_xref="GeneID:9772888"
/translation="MNQDLYIHGLSKTFSQITALHETNLVVRRGKFTTLLGPSGCGKT
TLLRLIAGLETPDTGTITMGEEILFSAERKKDIPAHHRHFGMVFQDFALWPHMTVFEN
VAFGLRAGKRGKGFASARDKELRTMVLEALDMVRLSGMEDRYPHQLSGGQQQRVAFAR
AVAIRPRLVLFDEPLSALDAVLREEMRIEMLSLVRDLGLTALYVTHDQIEAMSMSDEV
VVMKSGHILQTGTPEMIYGCPAHPEVARFIGKSNWLESERTLFRPEHVRWEQEQADQH
AFTVEILHVSYVGDRYEIRILAENGEQWTAYHSIRLPIGQQMHIWVSPQHIHQLEA"
misc_feature 160728..161705
/locus_tag="PPE_00129"
/note="ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism];
Region: PotA; COG3842"
/db_xref="CDD:33633"
misc_feature 160728..161456
/locus_tag="PPE_00129"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 160818..160841
/locus_tag="PPE_00129"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(160827..160832,160836..160844,160974..160976,
161223..161228,161325..161327)
/locus_tag="PPE_00129"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 160965..160976
/locus_tag="PPE_00129"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 161151..161180
/locus_tag="PPE_00129"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 161211..161228
/locus_tag="PPE_00129"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 161235..161246
/locus_tag="PPE_00129"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 161313..161333
/locus_tag="PPE_00129"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
misc_feature 161493..161693
/locus_tag="PPE_00129"
/note="TOBE domain; Region: TOBE_2; pfam08402"
/db_xref="CDD:203932"
gene 161727..162797
/locus_tag="PPE_00130"
/db_xref="GeneID:9772889"
CDS 161727..162797
/locus_tag="PPE_00130"
/note="COGMatches:COG1840; PfamMatches:PF01547;
PrositeMatches:PS00013; go_process: transport
(GO:0006810)"
/codon_start=1
/transl_table=11
/product="iron ABC transporter periplasmic protein"
/protein_id="YP_003868566.1"
/db_xref="GI:308066961"
/db_xref="GeneID:9772889"
/translation="MMNRHVFCTGWKKGTMLALTLTFGLAVAGCGTATPSKDGAPANG
SAGQAEAASTDQKLVVYSAGPDGLAKKLVAGYEAQSGVKVELFQGTTGKILARMEAEK
TNPVADVVVLASLPSVQGLKKEGLTLPYPDAKNADKLNPDWSDKEGNYFSTSASALGI
AYNTKLVKTPPTSWADLAKPEYKDQVNIPDPSLSGSALDFMTGYLSAKGDGGWALFEQ
YKANGVAMAGANQEALDPVITGAKGIVVAAVDYMTYKAKAKGEPIDIVYPTEGTVISP
RPAAILKSTQHEQNAKAFINYLLSEEAQKLVADASLLPGRTDVKADKRANMDEIPLLK
TNWEWMGEHGSDVTEKFTQMFK"
misc_feature 161898..162656
/locus_tag="PPE_00130"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_11; pfam13531"
/db_xref="CDD:205709"
misc_feature 161940..162791
/locus_tag="PPE_00130"
/note="ABC-type Fe3+ transport system, periplasmic
component [Inorganic ion transport and metabolism];
Region: AfuA; COG1840"
/db_xref="CDD:32025"
gene 162877..164472
/locus_tag="PPE_00131"
/db_xref="GeneID:9772890"
CDS 162877..164472
/locus_tag="PPE_00131"
/note="COGMatches:COG1178; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="iron ABC transporter permease"
/protein_id="YP_003868567.1"
/db_xref="GI:308066962"
/db_xref="GeneID:9772890"
/translation="MMPLLQIFIQSVYVDEKFQWDAPFRTLAASPFAGVLFSSIWLGI
CVIVGTTVLALPLAWIMSNTRLAHWRWLDVVLLIPFMTPPYIGSMGWILFMQKNGYLE
QLFPELHFLTPSFFSLGGMVMIMSLHLFPFLYLLLRGALVRIGGSLDEAGAVMGGGFL
YRFRRIILPLLLSAYGMGALLIFVKTIAEFGTPATFGRRIGYEVMTSEIHKYISSWPI
DFSKATSMASVLLTACLLMWYAQSVINRKFTYRLVGGKGSRPSRLRISGWATGLSVAF
ILLLLIASIGIPYFSILSASTMKLRGIGLAWDNLTLDSYKELLSWRSESMEALLNSVF
LSLSASTLAVVLGTWFALVIGGSRTRIQRTVDAFSLLPNTVPGIVMVVGLILWWNSPW
MPIPLYNTYGMVILTYVILFVPYTVQYVKSAFTQVDTGLFQAGQVFGGRPSYIFRRIV
LPLIIPGMLAGWMMTFTIASRELVGSLLILPPSVQTSATYIFAQFEQGQVSLGMAMAV
ISVGMTTLLLILMESLNSQRKWK"
misc_feature 162877..164460
/locus_tag="PPE_00131"
/note="ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism]; Region: ThiP;
COG1178"
/db_xref="CDD:31371"
misc_feature 162982..163581
/locus_tag="PPE_00131"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(163030..163035,163042..163047,163060..163062,
163090..163101,163105..163134,163141..163146,
163150..163152,163255..163260,163264..163266,
163270..163272,163279..163284,163288..163290,
163300..163305,163312..163314,163363..163365,
163405..163410,163417..163419,163438..163449,
163456..163461,163498..163503,163531..163536,
163543..163548,163552..163557,163564..163569,
163576..163581)
/locus_tag="PPE_00131"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(163108..163152,163438..163455)
/locus_tag="PPE_00131"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(163150..163152,163240..163242,163456..163458,
163492..163494,163501..163503,163531..163533)
/locus_tag="PPE_00131"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(163315..163353,163369..163374,163384..163386)
/locus_tag="PPE_00131"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
misc_feature 163915..164430
/locus_tag="PPE_00131"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(163921..163926,163939..163941,163969..163980,
163984..164013,164020..164025,164029..164031,
164104..164109,164113..164115,164119..164121,
164128..164133,164137..164139,164149..164154,
164161..164163,164212..164214,164254..164259,
164266..164268,164287..164298,164305..164310,
164347..164352,164380..164385,164392..164397,
164401..164406,164413..164418,164425..164430)
/locus_tag="PPE_00131"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(163987..164031,164287..164304)
/locus_tag="PPE_00131"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(164029..164031,164089..164091,164305..164307,
164341..164343,164350..164352,164380..164382)
/locus_tag="PPE_00131"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(164164..164202,164218..164223,164233..164235)
/locus_tag="PPE_00131"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 164469..165854
/locus_tag="PPE_00132"
/db_xref="GeneID:9772891"
CDS 164469..165854
/locus_tag="PPE_00132"
/note="COGMatches:COG1782; PfamMatches:PF00753"
/codon_start=1
/transl_table=11
/product="metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain"
/protein_id="YP_003868568.1"
/db_xref="GI:308066963"
/db_xref="GeneID:9772891"
/translation="MIMTKLRIWGGAGEHGRSCYVFEGTQHHVMLDCGVKKEGTGQYP
VFPPQKAEKLTTVLLSHAHEDHSMALPLLYKYGYQGEVWTTKATAEQLGSYFRSWHTY
VESRGAELPYDVQDIQSIAYRYLEDEAPAGEWLEACPGVRIMWGRSGHLAGAVWYAVE
MEGKRLFFSGDYSRESELLAADAPDLGVGEELHDLPEWKSEPNLADISIMDNAYGMDI
DPQPVKLERLRVEMERILWSGGHVLLPVPAFGRGQDMIVWASEQFPAQAMIVEHDIWQ
GLKQLKRWKEWLRPEAPARIKRVLNSDRVFVPRDAAERVSLLEQNPTAIIITRDGMMD
SPQARWYYQYLSDNRNMGEGNDSGERISNSVILTGHAPHGSFGKHLLERADQNDSCVA
RHLIYKVHQGLSDVRQMLKELPSKQVVLVHAPKLQTDLVRDELIREGNSGCEGPARKV
HSLEPGATLEV"
misc_feature 164481..165851
/locus_tag="PPE_00132"
/note="Predicted exonuclease of the beta-lactamase fold
involved in RNA processing [Translation, ribosomal
structure and biogenesis]; Region: YSH1; COG1236"
/db_xref="CDD:31429"
misc_feature 164547..>165017
/locus_tag="PPE_00132"
/note="Beta-lactamase superfamily domain; Region:
Lactamase_B_2; pfam12706"
/db_xref="CDD:205032"
misc_feature <165312..165608
/locus_tag="PPE_00132"
/note="Beta-Casp domain; Region: Beta-Casp; smart01027"
/db_xref="CDD:198095"
gene complement(165864..167024)
/locus_tag="PPE_00133"
/db_xref="GeneID:9772892"
CDS complement(165864..167024)
/locus_tag="PPE_00133"
/EC_number="3.4.21.62"
/note="COGMatches:COG1404; PfamMatches:PF00082;
PrositeMatches:PS00137; go_process: proteolysis
(GO:0006508)"
/codon_start=1
/transl_table=11
/product="subtilisin (alkaline mesentericopeptidase)"
/protein_id="YP_003868569.1"
/db_xref="GI:308066964"
/db_xref="GeneID:9772892"
/translation="MDYPDFLQRLHEGISEPSGSGRNKHIITFDKPHQYRECLSYLRK
LKPELAGLRQVQPARLIRALIAPLSGGDRLGKYHNGVTVEEDTRMKVHAETAHIPKVE
KNLSMPWGVKQVRAYKAWPSSTGNRVRIGVIDTGADFQHPDLRHSLARGINLLNRTML
PYDDNGHGTHIAGTIAASNYDEGMVGVAPRALIHPVKAFDHNGAAYVSDIILGIDWCV
LNRVDIINMSFGMKSRSKALLDMVNKAYHNGIVIVASSGNEGKRRSIDYPARYSQTIS
VGATDKYRRIAPFSNRGQFVDVYAPGEKITSSWIHGKHHEMSGTSMATSHVTGSIALL
LSLRPELEPGELKALLKRTATPLRLRKSAGRSSISTKLGEVDAFRLMQEGTK"
misc_feature complement(165966..166643)
/locus_tag="PPE_00133"
/note="Peptidase S8 family domain in Subtilisin proteins;
Region: Peptidases_S8_Subtilisin_subset; cd07477"
/db_xref="CDD:173803"
misc_feature complement(order(166062..166064,166251..166253,
166338..166340,166395..166397,166524..166526,
166623..166625))
/locus_tag="PPE_00133"
/note="active site"
/db_xref="CDD:173803"
misc_feature complement(order(166062..166064,166524..166526,
166623..166625))
/locus_tag="PPE_00133"
/note="catalytic residues [active]"
/db_xref="CDD:173803"
gene 167429..167980
/locus_tag="PPE_00134"
/db_xref="GeneID:9772893"
CDS 167429..167980
/locus_tag="PPE_00134"
/note="COGMatches:COG3343; PfamMatches:PF05066;
go_process: transcription (GO:0006350)"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit delta"
/protein_id="YP_003868570.1"
/db_xref="GI:308066965"
/db_xref="GeneID:9772893"
/translation="MSTPLNLKIDPEKVHETPMVDLAFMVLKAANTPYYYRDLMKEVA
KLRGFSDEEINDVIAQLYTEINIDGRFACVGTNLWGLKRWYPVDKSEDALTGAKRPRI
INDEDDDDEDDYHEEEETYNSDDDFDADSEDEDGEDELFDGEEDDDDSDEDVVIDDED
LSDEEDSEDENDDESTEDDDSLR"
misc_feature 167474..>167728
/locus_tag="PPE_00134"
/note="DNA-directed RNA polymerase subunit delta;
Reviewed; Region: PRK02363"
/db_xref="CDD:179416"
gene 168383..169984
/gene="pyrG"
/locus_tag="PPE_00135"
/db_xref="GeneID:9772894"
CDS 168383..169984
/gene="pyrG"
/locus_tag="PPE_00135"
/EC_number="6.3.4.2"
/note="TIGRFAMsMatches:TIGR00337; COGMatches:COG0504;
PfamMatches:PF06418, PF00117; go_process: pyrimidine
nucleotide biosynthesis (GO:0006221), go_fucntion:
catalytic activity (GO:0003824)"
/codon_start=1
/transl_table=11
/product="CTP synthase (CTP synthetase)"
/protein_id="YP_003868571.1"
/db_xref="GI:308066966"
/db_xref="GeneID:9772894"
/translation="MTKYIFVTGGVVSSLGKGITAASLGRLLKNRGLKVTIQKFDPYL
NVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLSKNSNVTTGKVYSSVISKE
RRGEYLGGTVQVIPHITNEIKERVYRAGREAGSDVIITEIGGTVGDIESLPFLEAIRQ
LKSEVGRENVMYIHVTLIPYIKAAGEVKTKPTQHSVKELRSIGIQPNVIVCRTEHELS
SDMKAKIALFCDIDANAVVECRDASTLYEVPLNLREEGLDEIVVNHLKLTTPAPDMTE
WEGLVDRISKLDKTVEIAIVGKYVALHDAYLSVVESLSHAGFDANADVKIRWVNAEEV
TDENVADMLGGIGGILVPGGFGDRGIEGKISTIRYAREQKIPFFGICLGMQVSVIEVA
RSLAGLEGANSSEINPATDYPVIDLLPDQKDIEDLGGTMRLGLYPCKLVEGSLASACY
NDELVYERHRHRYEFNNEYREVIEKAGLRISGTSPDGRLVEIVELPEHPWFLAVQFHP
EFTSRPNRPQPLFREFVKAALQLQA"
misc_feature 168383..169978
/gene="pyrG"
/locus_tag="PPE_00135"
/note="CTP synthetase; Validated; Region: pyrG; PRK05380"
/db_xref="CDD:180047"
misc_feature 168389..169153
/gene="pyrG"
/locus_tag="PPE_00135"
/note="CTP synthetase (CTPs) is a two-domain protein,
which consists of an N-terminal synthetase domain and
C-terminal glutaminase domain. The enzymes hydrolyze the
amide bond of glutamine to ammonia and glutamate at the
glutaminase domains and transfer nascent...; Region: CTGs;
cd03113"
/db_xref="CDD:48377"
misc_feature order(168419..168421,168428..168439,168497..168499,
168503..168511,168587..168589,168593..168595,
168602..168607,168803..168805,168809..168811)
/gene="pyrG"
/locus_tag="PPE_00135"
/note="Catalytic site [active]"
/db_xref="CDD:48377"
misc_feature order(168422..168436,168497..168499,168812..168814,
168944..168952,169052..169054)
/gene="pyrG"
/locus_tag="PPE_00135"
/note="active site"
/db_xref="CDD:48377"
misc_feature order(168497..168511,168809..168814,168830..168832,
168944..168952,169052..169054)
/gene="pyrG"
/locus_tag="PPE_00135"
/note="UTP binding site [chemical binding]; other site"
/db_xref="CDD:48377"
misc_feature 169253..169957
/gene="pyrG"
/locus_tag="PPE_00135"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in Cytidine Triphosphate Synthetase; Region:
GATase1_CTP_Synthase; cd01746"
/db_xref="CDD:153217"
misc_feature order(169436..169450,169523..169528,169535..169537,
169595..169597,169760..169771,169901..169903,
169907..169909)
/gene="pyrG"
/locus_tag="PPE_00135"
/note="active site"
/db_xref="CDD:153217"
misc_feature order(169442..169444,169526..169528)
/gene="pyrG"
/locus_tag="PPE_00135"
/note="putative oxyanion hole; other site"
/db_xref="CDD:153217"
misc_feature order(169523..169525,169901..169903,169907..169909)
/gene="pyrG"
/locus_tag="PPE_00135"
/note="catalytic triad [active]"
/db_xref="CDD:153217"
gene 170198..170566
/locus_tag="PPE_00136"
/db_xref="GeneID:9772895"
CDS 170198..170566
/locus_tag="PPE_00136"
/EC_number="2.7.-.-"
/note="COGMatches:COG0784; PfamMatches:PF00072;
PrositeMatches:PS50110; go_process: regulation of
transcription, DNA-dependent (GO:0006355)"
/codon_start=1
/transl_table=11
/product="sporulation initiation phosphotransferase F
(stage 0 sporulation protein F)"
/protein_id="YP_003868572.1"
/db_xref="GI:308066967"
/db_xref="GeneID:9772895"
/translation="MEKKKVLIVDDQNGIRILLMEVFGSEGYETFQAANGKIALEIVE
KEPPDLVLLDMKIPGMDGLEILKHLKTMNPDIKVIMMTAYGELDMIKEATELGALMHF
TKPFDIDEMRIAVNKQLRGD"
misc_feature 170213..170545
/locus_tag="PPE_00136"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 170216..170554
/locus_tag="PPE_00136"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(170225..170230,170357..170359,170381..170383,
170441..170443,170498..170500,170507..170512)
/locus_tag="PPE_00136"
/note="active site"
/db_xref="CDD:29071"
misc_feature 170357..170359
/locus_tag="PPE_00136"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(170366..170371,170375..170383)
/locus_tag="PPE_00136"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 170507..170515
/locus_tag="PPE_00136"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 170814..171668
/locus_tag="PPE_00137"
/db_xref="GeneID:9772896"
CDS 170814..171668
/locus_tag="PPE_00137"
/EC_number="4.1.2.13"
/note="COGMatches:COG0191; PfamMatches:PF01116;
PrositeMatches:PS00602, PS00806; go_process: glycolysis
(GO:0006096)"
/codon_start=1
/transl_table=11
/product="fructose-bisphosphate aldolase"
/protein_id="YP_003868573.1"
/db_xref="GI:308066968"
/db_xref="GeneID:9772896"
/translation="MPLVSMKDMLNKALEGKYAVGQYNINNLEWTQAILGAAEEEKSP
VILGVSEGAARHMGGFYTVVKMVEGLIHDMKITVPVAIHLDHGSSFEKCKEAIDAGFT
SVMIDDSHSPIDTNIATTKKVVEYAHSKGVSVEAEVGMVGGQEDDVVGDVMYAKLDDC
LRIVNETGIDTLAPALGSVHGPYKGEPNLGFKEMEEICNAIKLPLVLHGGTGIPTHDI
KKAISLGTSKINVNTENQIVFAKVVREVLAEKPDAYDPRTFIAPGREAIKQTVIGKIR
EFGSNNKA"
misc_feature 170829..171665
/locus_tag="PPE_00137"
/note="hypothetical protein; Provisional; Region:
PRK08185"
/db_xref="CDD:181275"
misc_feature 170829..171659
/locus_tag="PPE_00137"
/note="Tagatose-1,6-bisphosphate (TBP) aldolase and
related Type B Class II aldolases. TBP aldolase is a
tetrameric class II aldolase that catalyzes the reversible
condensation of dihydroxyacetone phosphate with
glyceraldehyde 3-phsophate to produce tagatose 1; Region:
TBP_aldolase_IIB; cd00947"
/db_xref="CDD:29573"
misc_feature order(170892..170900,170907..170909,170967..170969,
170976..170984,170997..170999,171009..171011,
171018..171023,171246..171248,171510..171515,
171519..171524,171531..171533,171543..171545,
171552..171554)
/locus_tag="PPE_00137"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29573"
misc_feature order(171066..171071,171348..171356,171360..171362,
171435..171440,171444..171446,171501..171503,
171507..171512)
/locus_tag="PPE_00137"
/note="active site"
/db_xref="CDD:29573"
misc_feature order(171069..171071,171351..171353,171435..171437)
/locus_tag="PPE_00137"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:29573"
misc_feature order(171348..171350,171354..171356,171360..171362,
171438..171440,171444..171446)
/locus_tag="PPE_00137"
/note="Na+ binding site [ion binding]; other site"
/db_xref="CDD:29573"
gene 171909..173162
/gene="murA1"
/locus_tag="PPE_00138"
/db_xref="GeneID:9772897"
CDS 171909..173162
/gene="murA1"
/locus_tag="PPE_00138"
/EC_number="2.5.1.7"
/note="TIGRFAMsMatches:TIGR01072; COGMatches:COG0766;
PfamMatches:PF00275"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine
1-carboxyvinyltransferase"
/protein_id="YP_003868574.1"
/db_xref="GI:308066969"
/db_xref="GeneID:9772897"
/translation="MEKLMITGGRPLQGTVSISGAKNSAIALIPAAILAESEVILDNL
PLLSDVAVYSEILEELGATVTWEGSQMKIDPSSIKSIPMPNGPVKKLRASYYMMGAML
GRFKEAIIGLPGGCNFEPRPIDQHIKGFEALGATVTNEHGAIHLHAKELRGTKIYLDV
SSVGATINIMLAAARAKGATIIENAAKEPEIIDVATLLNSMGAIIKGAGTETIRIEGV
SELHGCRHSIIPDRIQAGTYMIAAAATRGNVLIDNVIPKHMEALTAKMQEMGIGIEEY
DESIRVLGAPSYEHVDVKALIYPGFATDLQSPMTSLLTQAQGVSVLSDFVYSNRFKHV
PELVRMGAKIRVEGRSAIIEGGQLNAAKVKAADLRAGAALVIAGLTVSEGVTEVTGVE
YIDRGYDHLVSNLRLLGADVWRQTE"
misc_feature 171909..173150
/gene="murA1"
/locus_tag="PPE_00138"
/note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
Region: murA; TIGR01072"
/db_xref="CDD:162190"
misc_feature 171942..173132
/gene="murA1"
/locus_tag="PPE_00138"
/note="UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate +
UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555"
/db_xref="CDD:30128"
misc_feature order(171960..171971,172590..172601)
/gene="murA1"
/locus_tag="PPE_00138"
/note="hinge; other site"
/db_xref="CDD:30128"
misc_feature order(171975..171977,172182..172184,172194..172196,
172269..172286,172386..172388,172395..172400,
172818..172820)
/gene="murA1"
/locus_tag="PPE_00138"
/note="active site"
/db_xref="CDD:30128"
gene 173422..174759
/gene="rho"
/locus_tag="PPE_00139"
/db_xref="GeneID:9772898"
CDS 173422..174759
/gene="rho"
/locus_tag="PPE_00139"
/note="TIGRFAMsMatches:TIGR00767; COGMatches:COG1158;
PfamMatches:PF07498, PF07497, PF00006; go_process:
transcription termination (GO:0006353), go_component:
proton-transporting two-sector ATPase complex
(GO:0016469)"
/codon_start=1
/transl_table=11
/product="transcription termination factor rho"
/protein_id="YP_003868575.1"
/db_xref="GI:308066970"
/db_xref="GeneID:9772898"
/translation="MDLQISDLEEMKLTDLYKLAKQYQIPYYGTLKKKELIFAILRAQ
AEKSGLMFMQGVLEILPEGYGFLRPINYLPSTEDIYISASQIRKFDLRTGDLVSGKCR
TPKENERYFGLLQVNAVNGRSPEQAAERLHFPALTPLYPQTKLVLETSPNHLSTRIMD
VLAPVGLGQRGLIVAPPKAGKTLLLKEIANSISTNNPEIELFVLLIDERPEEVTDMQR
SVKGEVVASTFDELPENHIKVAELVLERALRLVEHKKDVVILLDSITRLARAYNLVIP
PSGRTLSGGIDPAAFHRPKRFFGAARNVEEGGSLTILATALIDTGSRMDDIIYEEFKG
TGNMELHLDRKLAERRIFPAIDIRRSGTRREEVLLNKEELDTIWAIRKNMTESHDFVE
GFLKKLRNSNTNAEFLASFDLTAPSSSGSQSSSGGQQRRTARSTTASVPATTN"
misc_feature 173428..174657
/gene="rho"
/locus_tag="PPE_00139"
/note="transcription termination factor Rho; Provisional;
Region: rho; PRK09376"
/db_xref="CDD:181809"
misc_feature 173440..173568
/gene="rho"
/locus_tag="PPE_00139"
/note="Rho termination factor, N-terminal domain; Region:
Rho_N; pfam07498"
/db_xref="CDD:203652"
misc_feature 173584..173775
/gene="rho"
/locus_tag="PPE_00139"
/note="Rho_CSD: Rho protein cold-shock domain (CSD). Rho
protein is a transcription termination factor in most
bacteria. In bacteria, there are two distinct mechanisms
for mRNA transcription termination. In intrinsic
termination, RNA polymerase and nascent mRNA...; Region:
Rho_CSD; cd04459"
/db_xref="CDD:88425"
misc_feature order(173593..173595,173599..173601,173611..173613,
173617..173619,173623..173625,173653..173655,
173659..173661,173734..173736,173743..173751)
/gene="rho"
/locus_tag="PPE_00139"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88425"
misc_feature 173878..174618
/gene="rho"
/locus_tag="PPE_00139"
/note="Transcription termination factor rho is a bacterial
ATP-dependent RNA/DNA helicase. It is a homohexamer. Each
monomer consists of an N-terminal domain of the OB fold,
which is responsible for binding to cysteine rich
nucleotides. This alignment is of the...; Region:
rho_factor; cd01128"
/db_xref="CDD:29994"
misc_feature order(173929..173931,174262..174264,174295..174297,
174304..174309,174316..174318,174325..174327,
174334..174336,174409..174414,174418..174432,
174436..174438,174508..174513,174553..174555,
174565..174567)
/gene="rho"
/locus_tag="PPE_00139"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:29994"
misc_feature 173944..173967
/gene="rho"
/locus_tag="PPE_00139"
/note="Walker A motif; other site"
/db_xref="CDD:29994"
misc_feature order(173953..173955,173959..173970,174475..174477)
/gene="rho"
/locus_tag="PPE_00139"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29994"
misc_feature 174193..174207
/gene="rho"
/locus_tag="PPE_00139"
/note="Walker B motif; other site"
/db_xref="CDD:29994"
gene 174855..176126
/locus_tag="PPE_00140"
/db_xref="GeneID:9772899"
CDS 174855..176126
/locus_tag="PPE_00140"
/note="PfamMatches:PF04055; go_fucntion: iron ion binding
(GO:0005506)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868576.1"
/db_xref="GI:308066971"
/db_xref="GeneID:9772899"
/translation="MYLVYADEKGNVYDHASLYGLARSADMIVEIMEDELIPLPEGAT
LVSLPSTRPVGMNPETGEMVSLPGDMQAVGALLPQGFTRLCLPGYVKTDKEYKLPLFG
YSAVVWKDGAFYVTAEQSDSPSKWNPENCDRHQVKLGVQRMTEQYPENRLYQHLSNCA
LGYECLTSSNTFLNRWEGGVPVSYSCNAGCFGCISEQPDDSGFVSPQTRMNFRPRVEE
IVEVMLEHLKTPESIISFGQGCEGEPSTQAKLIIDSIKEVRSITDMGYININTNAGLS
DHIRGIVDAGLDLMRVSTISALDDHYNAYYKPRGYTLANVEKSLRYASEQGVYTSINY
LIFPGVTDREEEIEAMIEFSKRTKLKLIQMRNLNIDPESYLELIPPAQGEILGMKQML
EIYREELPDVVIGSYTHVPPQGQARPKFAKA"
misc_feature 175392..176057
/locus_tag="PPE_00140"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature 175392..175913
/locus_tag="PPE_00140"
/note="Radical SAM superfamily; Region: Radical_SAM;
pfam04055"
/db_xref="CDD:202871"
misc_feature order(175410..175412,175416..175418,175422..175424,
175428..175436,175572..175574,175578..175583,
175662..175670,175731..175733,175857..175859,
175950..175955)
/locus_tag="PPE_00140"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 176284..176481
/gene="rpmE1"
/locus_tag="PPE_00141"
/db_xref="GeneID:9772900"
CDS 176284..176481
/gene="rpmE1"
/locus_tag="PPE_00141"
/note="TIGRFAMsMatches:TIGR00105; COGMatches:COG0254;
PrositeMatches:PS01143"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L31"
/protein_id="YP_003868577.1"
/db_xref="GI:308066972"
/db_xref="GeneID:9772900"
/translation="MQQAIQPTFNVTTVTCACGNSFETGSVKGSLRVEICSACHPFFT
GKQKFIDAGGRVDRFKKKYGI"
misc_feature 176284..176478
/gene="rpmE1"
/locus_tag="PPE_00141"
/note="50S ribosomal protein L31; Reviewed; Region: rpmE;
PRK00019"
/db_xref="CDD:178797"
gene complement(176597..177016)
/locus_tag="PPE_00142"
/db_xref="GeneID:9772901"
CDS complement(176597..177016)
/locus_tag="PPE_00142"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868578.1"
/db_xref="GI:308066973"
/db_xref="GeneID:9772901"
/translation="MRVTLFPIHFHDHLWSLHYTIIPSESKPDTFQFINTKKHLRNDC
QDVLITSIYRAPVIDRCDPSGNPEQQLGLGNPPAQEWACLWLLPSGPDQVHKYSLRRT
QPSTLCAGTSLTSTTPLTGIQPRYSGLRVTGHRYLPI"
gene 177016..178767
/locus_tag="PPE_00143"
/db_xref="GeneID:9772902"
CDS 177016..178767
/locus_tag="PPE_00143"
/EC_number="2.7.7.7"
/note="COGMatches:COG2812; PfamMatches:PF00004;
go_fucntion: ATP binding (GO:0005524)"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit gamma/tau"
/protein_id="YP_003868579.1"
/db_xref="GI:308066974"
/db_xref="GeneID:9772902"
/translation="MEHIALYRAWRPQAFKDMVGQQHIIQTLQNAIRENRTSHAYLFS
GPRGTGKTSAAKILAKAINCEHGPAPEPCNECEACKRITAGAVMDVQEIDAASNRGVE
EIRDLRDKVKYAPTEVRHKVYIIDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPH
RIPATIISRCQRFDFRRVSLEEQTERLDLICRQENIQADSDALQYIARLSDGGMRDAV
SVLDQISSFTDGRVTYQQVLDMTGGIASEQFGKLALALLKEDVGTVLQMIENFMQEGK
SADKCMENLLYYFRDLLMIKMVPQATKMTERVLDPERFKEVADAFTKEQLFAMIDTLN
RYQSEMKYAVQPQTLFEVALLKLCSIPGEAGTVAQPTAQRSGAAADQEDVVMLKRQLA
ELEKKLERALQGGLGVGAGQEASSGGRQASGGRVPAPRISAPAKLPSQLDRYIAEKSS
EAFAAAGRKWSQILQGVKEAKVTVHAWFMDGEPVSVLEDSVLVAFKNNIHRETTEKPA
NKQVIEKVLHEQLGHPYRLVTMMQKDWNAAIEGVSDQPAEELQLEPEHDAPGKSKEPW
IDEAIQLFGEDLVVIKD"
misc_feature 177016..178764
/locus_tag="PPE_00143"
/note="DNA polymerase III subunits gamma and tau;
Validated; Region: PRK05563"
/db_xref="CDD:180131"
misc_feature 177070..177543
/locus_tag="PPE_00143"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 177148..177171
/locus_tag="PPE_00143"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(177151..177174,177391..177393,177484..177486)
/locus_tag="PPE_00143"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 177379..177396
/locus_tag="PPE_00143"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 177520..177522
/locus_tag="PPE_00143"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 177709..178092
/locus_tag="PPE_00143"
/note="DNA polymerase III subunits gamma and tau domain
III; Region: DNA_pol3_gamma3; pfam12169"
/db_xref="CDD:152604"
gene 178810..179121
/locus_tag="PPE_00144"
/db_xref="GeneID:9772903"
CDS 178810..179121
/locus_tag="PPE_00144"
/note="COGMatches:COG0718; PfamMatches:PF02575;
go_fucntion: molecular function unknown (GO:0005554)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868580.1"
/db_xref="GI:308066975"
/db_xref="GeneID:9772903"
/translation="MNNMNQMMKQVKKMQEQMLKAQEELGGKVIEGTSGGGVVTVEVN
GHKKVLSITIKPEAVDPDDVEMLQDLVLTAVNDALSKADELANDDMGKFTGGMKIPGL
F"
misc_feature 178867..179118
/locus_tag="PPE_00144"
/note="hypothetical protein; Validated; Region: PRK00153"
/db_xref="CDD:178904"
gene 179149..179748
/gene="recR"
/locus_tag="PPE_00145"
/db_xref="GeneID:9772904"
CDS 179149..179748
/gene="recR"
/locus_tag="PPE_00145"
/note="TIGRFAMsMatches:TIGR00615; COGMatches:COG0353;
PfamMatches:PF02132, PF01751; PrositeMatches:PS01300;
go_process: DNA recombination (GO:0006310), go_process:
DNA modification (GO:0006304)"
/codon_start=1
/transl_table=11
/product="recombination protein RecR"
/protein_id="YP_003868581.1"
/db_xref="GI:308066976"
/db_xref="GeneID:9772904"
/translation="MYYPEPIAKLIDAFTRLPGVGPKTAARLAFHVLKMKEDDVIDFA
KALVNVKRNLHFCSVCGNITDTDPCRICQDKTRDTSVICVVQDSKDLVAMERTKEFNG
FYHVLHGAISPMEGIGPEDIKLKELLNRLSDERVKELILATNPNIEGEATAMYISRLV
RPFEIKVTRIAHGLPVGGDLEYADEVTLSKALEGRRELN"
misc_feature 179152..179742
/gene="recR"
/locus_tag="PPE_00145"
/note="recombination protein RecR; Reviewed; Region: recR;
PRK00076"
/db_xref="CDD:178844"
misc_feature 179260..179382
/gene="recR"
/locus_tag="PPE_00145"
/note="RecR protein; Region: RecR; pfam02132"
/db_xref="CDD:202123"
misc_feature 179386..179721
/gene="recR"
/locus_tag="PPE_00145"
/note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in Escherichia coli RecR. RecR participates in the RecFOR
pathway of homologous recombinational repair in
prokaryotes. This pathway provides a...; Region:
TOPRIM_recR; cd01025"
/db_xref="CDD:173775"
misc_feature order(179404..179409,179416..179418,179578..179580,
179584..179586,179590..179592)
/gene="recR"
/locus_tag="PPE_00145"
/note="putative active site [active]"
/db_xref="CDD:173775"
misc_feature order(179404..179406,179578..179580)
/gene="recR"
/locus_tag="PPE_00145"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173775"
misc_feature order(179422..179430,179434..179439,179560..179562,
179566..179568,179572..179574,179581..179583,
179617..179619,179647..179682,179686..179688,
179701..179703,179707..179709,179713..179721)
/gene="recR"
/locus_tag="PPE_00145"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:173775"
gene 179963..180274
/locus_tag="PPE_00146"
/db_xref="GeneID:9772905"
CDS 179963..180274
/locus_tag="PPE_00146"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868582.1"
/db_xref="GI:308066977"
/db_xref="GeneID:9772905"
/translation="MWERMKQNFRRQENGKSEAEYRKELFAQIRASHAEWLRAHRLFH
EATGKDEIDYAIFVLEAAERKYQIHLKSAKQQGLHRFHLPADEPGYANDTDRVHKRRA
E"
gene complement(180626..180895)
/locus_tag="PPE_00147"
/db_xref="GeneID:9772906"
CDS complement(180626..180895)
/locus_tag="PPE_00147"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868583.1"
/db_xref="GI:308066978"
/db_xref="GeneID:9772906"
/translation="MVYRKSDKLILKTDEIKYLLFDFANKIVLLTRCSVFKDQTYIMS
YFVSPPHLSGDLINITHIRDLSQHFFKIIFLISFKCFSHKKIPGL"
gene 180938..182443
/locus_tag="PPE_00148"
/db_xref="GeneID:9772907"
rRNA 180938..182443
/locus_tag="PPE_00148"
/product="16S ribosomal RNA"
/db_xref="GeneID:9772907"
gene 182583..182699
/locus_tag="PPE_04954"
/db_xref="GeneID:9772908"
rRNA 182583..182699
/locus_tag="PPE_04954"
/product="5S ribosomal RNA"
/db_xref="GeneID:9772908"
gene 182738..182814
/locus_tag="PPE_00149"
/db_xref="GeneID:9772909"
tRNA 182738..182814
/locus_tag="PPE_00149"
/product="tRNA-Ile"
/db_xref="GeneID:9772909"
gene 182836..182911
/locus_tag="PPE_00150"
/db_xref="GeneID:9772910"
tRNA 182836..182911
/locus_tag="PPE_00150"
/product="tRNA-Ala"
/db_xref="GeneID:9772910"
gene 183083..186008
/locus_tag="PPE_00152"
/db_xref="GeneID:9772911"
rRNA 183083..186008
/locus_tag="PPE_00152"
/product="23S ribosomal RNA"
/db_xref="GeneID:9772911"
gene 186142..186233
/locus_tag="PPE_00153"
/db_xref="GeneID:9772912"
tRNA 186142..186233
/locus_tag="PPE_00153"
/product="tRNA-Ser"
/db_xref="GeneID:9772912"
gene 186265..186341
/locus_tag="PPE_00154"
/db_xref="GeneID:9772913"
tRNA 186265..186341
/locus_tag="PPE_00154"
/product="tRNA-Met"
/db_xref="GeneID:9772913"
gene 186352..186427
/locus_tag="PPE_00155"
/db_xref="GeneID:9772914"
tRNA 186352..186427
/locus_tag="PPE_00155"
/product="tRNA-Val"
/db_xref="GeneID:9772914"
gene 186432..186507
/locus_tag="PPE_00156"
/db_xref="GeneID:9772915"
tRNA 186432..186507
/locus_tag="PPE_00156"
/product="tRNA-Thr"
/db_xref="GeneID:9772915"
gene 186531..186607
/locus_tag="PPE_00157"
/db_xref="GeneID:9772916"
tRNA 186531..186607
/locus_tag="PPE_00157"
/product="tRNA-Asp"
/db_xref="GeneID:9772916"
gene 186686..186761
/locus_tag="PPE_00158"
/db_xref="GeneID:9772917"
tRNA 186686..186761
/locus_tag="PPE_00158"
/product="tRNA-Phe"
/db_xref="GeneID:9772917"
gene 186768..186853
/locus_tag="PPE_00159"
/db_xref="GeneID:9772918"
tRNA 186768..186853
/locus_tag="PPE_00159"
/product="tRNA-Tyr"
/db_xref="GeneID:9772918"
gene 186861..186936
/locus_tag="PPE_00160"
/db_xref="GeneID:9772919"
tRNA 186861..186936
/locus_tag="PPE_00160"
/product="tRNA-Lys"
/db_xref="GeneID:9772919"
gene 187093..188235
/locus_tag="PPE_00161"
/db_xref="GeneID:9772920"
CDS 187093..188235
/locus_tag="PPE_00161"
/note="COGMatches:COG2508"
/codon_start=1
/transl_table=11
/product="regulator of polyketide synthase expression"
/protein_id="YP_003868584.1"
/db_xref="GI:308066979"
/db_xref="GeneID:9772920"
/translation="MTLDTEWIQQQLQNIIQAPFTIVPWCPDMMAEGKTADSVIPDRS
FVRDNKLYFPFRASAGELAAFVVEARYLTDRERKLVEALLGNMEQVWQNGPQLSDNLI
YSEEERMNRFGQWLIQQAANQNREEEVPDELQLRDLLSACMVPILLNGEGTQEGAITY
TQLHRLFASYFGGDVLLTPLDEQSWLIMAKTELLLGADDERDKDTESRDADFTESLEE
VLTAFSLGLYELIANEWVGVFHLAVSKPSIPLQSLPQELNLLWETIHLGKIFHVTEHI
HFSWELHLERLLNRIPKEQRVLFLEQVMKSSVILEDSETMATLDIFFQLDCNVSETAK
RLYVHRNTLIYRLDKIKQETGLDVRTFNDAVLVKLYLLLYKVTKRK"
misc_feature 188044..188184
/locus_tag="PPE_00161"
/note="PucR C-terminal helix-turn-helix domain; Region:
HTH_30; pfam13556"
/db_xref="CDD:205734"
gene 188339..189463
/locus_tag="PPE_00162"
/db_xref="GeneID:9772921"
CDS 188339..189463
/locus_tag="PPE_00162"
/note="COGMatches:COG3839; PfamMatches:PF00005;
PrositeMatches:PS00211, PS50893; go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="multiple sugar-binding transport ATP-binding
protein msmX"
/protein_id="YP_003868585.1"
/db_xref="GI:308066980"
/db_xref="GeneID:9772921"
/translation="MAGVRLEHIFKKYPGADKATVVDVNLDIQDKEFLVLVGPSGCGK
STTLRMIAGLEEISDGKLYIGDRVVNDVAPKDRDIAMVFQSYALYPHMNVYQNMAFGL
KLRKVKKEEIDKRVREAAKILDIEHLLDRKPKALSGGQRQRVALGRAIVRDPQVFLMD
EPLSNLDAKLRGQMRAEITKLAKRLETTVIYVTHDQVEAMTMGDRIVVMKDGIIQQAA
SPDELYNRPVNLFVAGFIGSPTMNFITGQLVEKEGALHFTAPGLDLFVPEGKGQILKA
KGYIGKDVILGIRPEDIHEEPVFLEASPNTIFTSTVDVTENLGHEMLLYLSGAGNDTI
IARVDGRSNTRDGVKAKLAVDMNKVHIFDKESELSILVGE"
misc_feature 188339..189436
/locus_tag="PPE_00162"
/note="glycerol-3-phosphate transporter ATP-binding
subunit; Provisional; Region: ugpC; PRK11650"
/db_xref="CDD:183258"
misc_feature 188348..188986
/locus_tag="PPE_00162"
/note="The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two...; Region:
ABC_MalK_N; cd03301"
/db_xref="CDD:73060"
misc_feature 188450..188473
/locus_tag="PPE_00162"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73060"
misc_feature order(188459..188464,188468..188476,188588..188590,
188816..188821,188918..188920)
/locus_tag="PPE_00162"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73060"
misc_feature 188579..188590
/locus_tag="PPE_00162"
/note="Q-loop/lid; other site"
/db_xref="CDD:73060"
misc_feature 188744..188773
/locus_tag="PPE_00162"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73060"
misc_feature 188804..188821
/locus_tag="PPE_00162"
/note="Walker B; other site"
/db_xref="CDD:73060"
misc_feature 188828..188839
/locus_tag="PPE_00162"
/note="D-loop; other site"
/db_xref="CDD:73060"
misc_feature 188906..188926
/locus_tag="PPE_00162"
/note="H-loop/switch region; other site"
/db_xref="CDD:73060"
misc_feature 189257..189421
/locus_tag="PPE_00162"
/note="TOBE domain; Region: TOBE; pfam03459"
/db_xref="CDD:202645"
gene 189811..190749
/gene="hprK"
/locus_tag="PPE_00163"
/db_xref="GeneID:9772922"
CDS 189811..190749
/gene="hprK"
/locus_tag="PPE_00163"
/EC_number="2.7.1.-"
/EC_number="2.7.4.-"
/note="TIGRFAMsMatches:TIGR00679; COGMatches:COG1493;
PfamMatches:PF02603, PF07475; go_process: regulation of
carbohydrate metabolism (GO:0006109)"
/codon_start=1
/transl_table=11
/product="HPr kinase/phosphorylase"
/protein_id="YP_003868586.1"
/db_xref="GI:308066981"
/db_xref="GeneID:9772922"
/translation="MAKQVKVSELVQQFQMEVISGEKGLRRLITVDDLNRPGLEMAGY
FEYHTQERVQLLGRSELAFLGMLPPEERRDRMERLCTELTPCIIITRGLEVPAELVEA
SAERDIPVLRTNMATTILSSRITGFLERKLAPTATIHGVLCDVYGVGMLITGSSGIGK
SETALELVKRGHRLVADDAVEIRQTSDFQLHGTAPELIRHLLEIRGVGIINVMTLFGA
GAVRNNKRITLVVRLEAWQQDKQYDRLGLDEETTRIIDTDVPLVTIPVRPGRNLAVII
EVAAMNYRLKQMGVNAALQFTNKLTATISEDMEEMD"
misc_feature 189817..190731
/gene="hprK"
/locus_tag="PPE_00163"
/note="HPr kinase/phosphorylase; Provisional; Region:
PRK05428"
/db_xref="CDD:180075"
misc_feature 189817..190197
/gene="hprK"
/locus_tag="PPE_00163"
/note="HPr Serine kinase N terminus; Region: Hpr_kinase_N;
pfam02603"
/db_xref="CDD:190362"
misc_feature 190210..190659
/gene="hprK"
/locus_tag="PPE_00163"
/note="HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates the
utilization of carbon sources by gram-positive bacteria.
It catalyzes both the ATP-dependent...; Region: HprK_C;
cd01918"
/db_xref="CDD:29833"
misc_feature order(190219..190221,190225..190227,190276..190281,
190288..190290,190303..190305,190315..190317,
190342..190347,190351..190353,190399..190401,
190417..190419,190429..190437,190450..190452,
190540..190548,190597..190599,190630..190632,
190639..190641)
/gene="hprK"
/locus_tag="PPE_00163"
/note="Hpr binding site; other site"
/db_xref="CDD:29833"
misc_feature order(190225..190227,190279..190281,190285..190293,
190339..190344,190417..190419,190423..190425)
/gene="hprK"
/locus_tag="PPE_00163"
/note="active site"
/db_xref="CDD:29833"
misc_feature order(190297..190299,190303..190305,190315..190320,
190327..190329,190399..190401,190411..190413,
190429..190431,190435..190443,190450..190458,
190594..190596,190642..190647,190651..190653)
/gene="hprK"
/locus_tag="PPE_00163"
/note="homohexamer subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:29833"
gene 190793..191848
/gene="lgt"
/locus_tag="PPE_00164"
/db_xref="GeneID:9772923"
CDS 190793..191848
/gene="lgt"
/locus_tag="PPE_00164"
/EC_number="2.4.99.-"
/note="TIGRFAMsMatches:TIGR00544; COGMatches:COG0682;
PfamMatches:PF01790; PrositeMatches:PS01311; go_component:
membrane (GO:0016020)"
/codon_start=1
/transl_table=11
/product="prolipoprotein diacylglyceryl transferase"
/protein_id="YP_003868587.1"
/db_xref="GI:308066982"
/db_xref="GeneID:9772923"
/translation="MSTATLLLNPIAFSIGAIKVHWYGLILGLAALVGLYLAIREGKR
FGIPQDFFMDMLLLGVPSAIIGARIYYVAFKWEDYRDNLWDVFKIWNGGIAIYGALIG
AIICAVIYFRYKGYNFWRIADICAPGLLIGQAIGRWGNFVNQEAYGGPTEETFLRNQL
HLPDFIVNQMNVNGVFHHPTFLYESLWSIVGVILLLVIRRMKFVRAGEMFAFYFIWYS
IGRFFIERVRTDSLAFQGPDWLASFVNALWSPMVWLGFEPGHLDPSYGNVRISQLLPI
FIVVAAVIFILVRRRKGTSVARYSDPIISSKAGIDQVPDVMPEQVSRPGQDAVPPTAT
ADKLPKEDTNEDKKEHL"
misc_feature 190814..191503
/gene="lgt"
/locus_tag="PPE_00164"
/note="prolipoprotein diacylglyceryl transferase;
Reviewed; Region: PRK12437"
/db_xref="CDD:183527"
gene 191845..192498
/locus_tag="PPE_00165"
/db_xref="GeneID:9772924"
CDS 191845..192498
/locus_tag="PPE_00165"
/EC_number="3.6.1.1"
/note="COGMatches:COG0546; PfamMatches:PF00702;
go_process: metabolism (GO:0008152)"
/codon_start=1
/transl_table=11
/product="Pyrophosphatase ppaX"
/protein_id="YP_003868588.1"
/db_xref="GI:308066983"
/db_xref="GeneID:9772924"
/translation="MINTILFDLDGTIMDTNELIISTFLHILNHPDADPLTREHIIPH
MGGTLDDQLRTFSGLTDVSGLVKDYRAYNQIHHDQMVKPFPYVIEVIQELRARGIKLG
VVTTKIRPSTIRVLNLFNLTSSMDYIVTVDDVEHPKPHAEPVLKALAGLNAEAEHTLM
VGDSSFDILSAQAAGVKSAGVAWSLKGEETLRRYGPDYMLHDMRDLLKLELQGVNVS"
misc_feature 191845..192465
/locus_tag="PPE_00165"
/note="pyrophosphatase PpaX; Provisional; Region:
PRK13288"
/db_xref="CDD:183951"
misc_feature 192019..192387
/locus_tag="PPE_00165"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature order(192025..192033,192157..192162)
/locus_tag="PPE_00165"
/note="active site"
/db_xref="CDD:119389"
misc_feature order(192025..192036,192037..192039)
/locus_tag="PPE_00165"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature 192157..192159
/locus_tag="PPE_00165"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 192495..192989
/locus_tag="PPE_00166"
/db_xref="GeneID:9772925"
CDS 192495..192989
/locus_tag="PPE_00166"
/note="COGMatches:COG0110; PfamMatches:PF00132;
PrositeMatches:PS00101"
/codon_start=1
/transl_table=11
/product="acetyltransferase"
/protein_id="YP_003868589.1"
/db_xref="GI:308066984"
/db_xref="GeneID:9772925"
/translation="MRKVNRYPVEGPNALWQIYRTVSRWKGIKNFIFIQIARYCPVLS
LKNVIYRRMLGMKVGQHAAFGLMVMVDVFFPEHITIGNNSVIGYNTTILAHEYLIQEY
RIGKVVIGDHVLIGANTTILPGVTIGDGAIVAAGAVVHKDVPAGAFVGGNPLRDLRRS
GVNE"
misc_feature 192531..192959
/locus_tag="PPE_00166"
/note="Acetyltransferase (isoleucine patch superfamily)
[General function prediction only]; Region: WbbJ; COG0110"
/db_xref="CDD:30459"
misc_feature 192657..192959
/locus_tag="PPE_00166"
/note="Maltose O-acyltransferase (MAT)-like: This family
is composed of maltose O-acetyltransferase, galactoside
O-acetyltransferase (GAT), xenobiotic acyltransferase
(XAT) and similar proteins. MAT and GAT catalyze the
CoA-dependent acetylation of the...; Region: LbH_MAT_like;
cd04647"
/db_xref="CDD:100053"
misc_feature order(192675..192677,192681..192683,192705..192707,
192741..192743,192747..192749,192765..192767,
192783..192791,192828..192830,192834..192836,
192843..192845,192900..192902,192948..192950)
/locus_tag="PPE_00166"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100053"
misc_feature order(192681..192683,192687..192689,192783..192785,
192789..192791,192834..192836,192840..192845,
192858..192860,192894..192899,192912..192917,
192942..192947,192951..192953)
/locus_tag="PPE_00166"
/note="active site"
/db_xref="CDD:100053"
misc_feature order(192681..192683,192687..192689,192783..192785)
/locus_tag="PPE_00166"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100053"
misc_feature order(192783..192785,192789..192791,192834..192836,
192840..192845,192858..192860,192888..192890,
192894..192899,192912..192917,192936..192938,
192942..192947,192951..192953)
/locus_tag="PPE_00166"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100053"
gene complement(193227..193643)
/locus_tag="PPE_00167"
/db_xref="GeneID:9772926"
CDS complement(193227..193643)
/locus_tag="PPE_00167"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868590.1"
/db_xref="GI:308066985"
/db_xref="GeneID:9772926"
/translation="MILWFSGLNLLLFVLLGIFLWNQKKKENQHLQSILDIVKQQSSQ
NSGVVICLSYHSSKHKALCELIDHVSKNKLVIVYDAPKWLFLSKQKKWTSHLLIPSTS
IPHLADETRVIKFCGTKYNIINEATEYIAYQYLQNH"
gene complement(193627..194145)
/locus_tag="PPE_00168"
/db_xref="GeneID:9772927"
CDS complement(193627..194145)
/locus_tag="PPE_00168"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868591.1"
/db_xref="GI:308066986"
/db_xref="GeneID:9772927"
/translation="MSEIIALICDMIIAVLFFTSFYAKIGEIEGFKYEIYSYQVVRSM
GLVQLAVYAVLAAECVLFISFAAGILDGFKEWACILLMLFFSVFTIRKRMRTGVTTCA
CFGEMKWLNRTPIMRNIAIILILLVDLLVTRSTNIFLATNLILLIVSIGFVMELARMK
FNEKREHYDSMV"
gene complement(194186..194575)
/locus_tag="PPE_00169"
/db_xref="GeneID:9772928"
CDS complement(194186..194575)
/locus_tag="PPE_00169"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868592.1"
/db_xref="GI:308066987"
/db_xref="GeneID:9772928"
/translation="MIAQIIICDQIQNDKQSKIHTLGTILNHVHIPVLPFVVKLYVLV
KISDFPSRESLDMQLRIYDEQDEIIGTTSRLVLRNYRDLDMIPGVDAQLELSLVIVQS
GNIRIKCFIDEEEVTWYPLMIRLAEAS"
gene complement(194861..195295)
/locus_tag="PPE_00170"
/db_xref="GeneID:9772929"
CDS complement(194861..195295)
/locus_tag="PPE_00170"
/codon_start=1
/transl_table=11
/product="methylamine utilization protein"
/protein_id="YP_003868593.1"
/db_xref="GI:308066988"
/db_xref="GeneID:9772929"
/translation="MSTSANRKKEDVGLPVGSLLPSQKVKAYTGELYQLDILDKPQIM
VFISMYCSFCIDLLPHLSQIQQKHRDYQLMLFSTGDDEDHRDMIDYFKWDFPVFHMDQ
SEMENWFDITQMPFILVTHWNKVICKGVAYDVVGASQLILNV"
misc_feature complement(194939..195190)
/locus_tag="PPE_00170"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:213097"
gene complement(195321..197090)
/locus_tag="PPE_00171"
/db_xref="GeneID:9772930"
CDS complement(195321..197090)
/locus_tag="PPE_00171"
/note="COGMatches:COG1132; PfamMatches:PF00005;
PrositeMatches:PS00211, PS50893, PS50929; go_fucntion:
ATPase activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="multidrug ABC transporter protein"
/protein_id="YP_003868594.1"
/db_xref="GI:308066989"
/db_xref="GeneID:9772930"
/translation="MNHLFKTLKYSKISFIKVFQFNKPIVLLSLAVYIFNSIQSNINI
YLTGMLVNQFQSQSIRIVIQTIMVIAGLQIFKLILETFSRYKNLQLSINFAQRSQADL
IHIVAQTELLDKEHPKFKSDFLYWSYASGQYYNSYLGTIQLTQQIITSILGFYLLSSS
FILLGLMAVIIGIVRGVVELSFVRHRVLLNQEIQKKTREHYYYFFLLTETQHQKELML
NRLVNHFMKSWEAAKKKVNMLELKLEKLNINRYRVGQLISTLNYAVILIIIAVLIANQ
HLTIGDYVTITMALSMTENNIAALFQGLSNLMESANHIEQLENNKELVERQSISTQEA
GLNPFSFHKEIKVSDLTFYYPNREKPALSHISLCIPKGKKIAIVGANGSGKSTLIKVL
LGLYRVPPHAVFIDDLGIEQINREDMWQKMSAIFQDFIKYTTDVRENVAVGNIGEFHN
SERIERILDSLALLTEFPKGIDTKLGDLDDTSVNLSGGQWQKLALSRIFIRDKAEVIV
LDEPTSALDPTSEVNLMNQILTHCYDKTVLLISHRIGIARQADHIIVMQDGKIVEEGT
HQELIIGTGAYQMMWEQQREWYE"
misc_feature complement(195333..197021)
/locus_tag="PPE_00171"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature complement(195348..196058)
/locus_tag="PPE_00171"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(195933..195956)
/locus_tag="PPE_00171"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(195465..195467,195558..195563,
195810..195812,195930..195938,195942..195947))
/locus_tag="PPE_00171"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(195810..195821)
/locus_tag="PPE_00171"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(195609..195638)
/locus_tag="PPE_00171"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(195558..195575)
/locus_tag="PPE_00171"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(195540..195551)
/locus_tag="PPE_00171"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(195459..195479)
/locus_tag="PPE_00171"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(197087..197605)
/locus_tag="PPE_00172"
/db_xref="GeneID:9772931"
CDS complement(197087..197605)
/locus_tag="PPE_00172"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868595.1"
/db_xref="GI:308066990"
/db_xref="GeneID:9772931"
/translation="MRTVNEVDQTIDEKERDHRRFLKGVSSVYTLGGYFPTEIILFSK
AASISLDWIKQVCSGSILFFMSSYCSACHMEVVEDFIEEFPQFDYGIFYETSEEQFAE
HTKPFLGKAHLYPCDLSRLKPQTLVNSVPYALALNKMGQVTGAGVIGTDTEMQQVAYS
LLTVYARNNEPK"
misc_feature complement(197180..197425)
/locus_tag="PPE_00172"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:213097"
gene 198137..199342
/locus_tag="PPE_00173"
/db_xref="GeneID:9772932"
CDS 198137..199342
/locus_tag="PPE_00173"
/note="COGMatches:COG3705; PfamMatches:PF00587;
PrositeMatches:PS50862; go_process: tRNA aminoacylation
for protein translation (GO:0006418)"
/codon_start=1
/transl_table=11
/product="ATP phosphoribosyltransferase regulatory
subunit"
/protein_id="YP_003868596.1"
/db_xref="GI:308066991"
/db_xref="GeneID:9772932"
/translation="MSKPKGFEIPVGVRDYLPRAVSKLRAIELNVLECMERWGYRQIM
TPTMEYYDTVGVASSTSDRKLFKLLNNRGTTLVLRSDMTAPIARVVSSLLKEEEVPLR
LSYHANVFRAIEEEAGREAEFFQTGVELVGDDSPEADAEVVALAIASLQAAGVTSFKI
AMGHVGFLNGLFEEIIPGRQAKQQALKELLLSRDVVGYRTAIEALGLAPEHRDKLEAI
LRLRGGKEICDQATRLSVEQQTIRSIAHLCEVWEVLEAYGVSEHVLIDLTMIGDFSYY
TGMTFEGYAAEIGFPVCNGGRYDNLLQQFGRSVPATGFALKTNRIVDGVDGIQMETKL
PVLIRYDEQGRQEALSAAALLRATGLTVVTGLTGGPEDRRREQHGLYAEVYSYTAEGR
QPVQRRELP"
misc_feature 198176..199105
/locus_tag="PPE_00173"
/note="ATP phosphoribosyltransferase, regulatory subunit;
Region: hisZ_biosyn_reg; TIGR00443"
/db_xref="CDD:200015"
misc_feature 198197..199102
/locus_tag="PPE_00173"
/note="Class II Histidinyl-tRNA synthetase (HisRS)-like
catalytic core domain. HisRS is a homodimer. It is
responsible for the attachment of histidine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent...; Region:
HisRS-like_core; cd00773"
/db_xref="CDD:73226"
misc_feature order(198209..198211,198245..198247,198260..198280,
198338..198343,198377..198379,198383..198385,
198398..198403,198410..198415,198497..198502,
198521..198523,198545..198547,198557..198559,
198566..198568,199022..199024,199073..199078)
/locus_tag="PPE_00173"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73226"
misc_feature 198254..198280
/locus_tag="PPE_00173"
/note="motif 1; other site"
/db_xref="CDD:73226"
misc_feature order(198377..198379,198383..198385,198467..198469,
198473..198475,198494..198496,198503..198505,
198509..198511,198521..198523,198947..198949,
198953..198955,198959..198964,199007..199009,
199022..199024,199076..199078,199085..199087,
199094..199096)
/locus_tag="PPE_00173"
/note="active site"
/db_xref="CDD:73226"
misc_feature 198464..198478
/locus_tag="PPE_00173"
/note="motif 2; other site"
/db_xref="CDD:73226"
misc_feature order(199073..199087,199094..199096)
/locus_tag="PPE_00173"
/note="motif 3; other site"
/db_xref="CDD:73226"
gene 199339..199983
/gene="hisG"
/locus_tag="PPE_00174"
/db_xref="GeneID:9772933"
CDS 199339..199983
/gene="hisG"
/locus_tag="PPE_00174"
/EC_number="2.4.2.17"
/note="TIGRFAMsMatches:TIGR00070; COGMatches:COG0040;
PfamMatches:PF01634; go_process: histidine biosynthesis
(GO:0000105)"
/codon_start=1
/transl_table=11
/product="ATP phosphoribosyltransferase"
/protein_id="YP_003868597.1"
/db_xref="GI:308066992"
/db_xref="GeneID:9772933"
/translation="MTETLKVAMPKGRIYKQASELFRRAGVPIPLDVDETRKLVIPLP
ELGMEFIMAKPVDVPTYVEYGAADIGIVGKDVLLEENKDVYELLDLGIARCRMSVIAL
PDWQPGIRQRVATKYPNVASQYFREQGQQVEVIKLNGSIELAPLIGLADRIVDMVETG
QTLRENGLIEQISILDITSRLIANRVSYRMKNGPIQALCDRLHQVIPTEVVSKD"
misc_feature 199342..199965
/gene="hisG"
/locus_tag="PPE_00174"
/note="ATP phosphoribosyltransferase catalytic subunit;
Reviewed; Region: hisG; PRK01686"
/db_xref="CDD:179320"
misc_feature 199351..>199956
/gene="hisG"
/locus_tag="PPE_00174"
/note="ATP phosphoribosyltransferase [Amino acid transport
and metabolism]; Region: HisG; COG0040"
/db_xref="CDD:30389"
gene 200047..201360
/locus_tag="PPE_00175"
/db_xref="GeneID:9772934"
CDS 200047..201360
/locus_tag="PPE_00175"
/EC_number="1.1.1.23"
/note="COGMatches:COG0141; PfamMatches:PF00815;
PrositeMatches:PS00611; go_process: histidine biosynthesis
(GO:0000105)"
/codon_start=1
/transl_table=11
/product="histidinol dehydrogenase"
/protein_id="YP_003868598.1"
/db_xref="GI:308066993"
/db_xref="GeneID:9772934"
/translation="MKIVAARDFSLQREVDYGTPEQNEAVRTIIQSVRQEGDEAVLRY
TQSFDGVSLIAEQLRVTEKELKAAYDKVEPSFLQAIREAADNIRAFHMKQKRNSWMDL
QPDGSLLGQIIRPLKRVGVYVPGGKAAYPSSVLMNVIPAQVAGVPEIVMVTPPATGGK
AGIDPYTLVAAAEAGVTEIYRVGGAQAIASLAYGTHSIEPVDKICGPGNIYVALAKRE
VYGAVDIDSIAGPSEIVVLADDTANASYVAADLLSQAEHDEMASAILVTPSQRLAEEV
SAEVQRQMAELPRRDIAAASVEAYGAIIVVDTLEEGIHIVNRLAPEHLEIMTEQPMEH
VGLIENAGAIFLGAYSSEPVGDYFAGPNHIIPTNGTARFSSPVDIDDFIKKSSMIYYS
KEALLRNGETIMQLARHEGLEGHARAIQVRLDNEKKAVDGDGERK"
misc_feature 200116..201291
/locus_tag="PPE_00175"
/note="Histidinol dehydrogenase, HisD, E.C 1.1.1.23.
Histidinol dehydrogenase catalyzes the last two steps in
the L-histidine biosynthesis pathway, which is conserved
in bacteria, archaea, fungi, and plants. These last two
steps are (i) the NAD-dependent...; Region: Histidinol_dh;
cd06572"
/db_xref="CDD:119329"
misc_feature 200122..201312
/locus_tag="PPE_00175"
/note="histidinol dehydrogenase; Region: hisD; TIGR00069"
/db_xref="CDD:161689"
misc_feature order(200188..200190,200410..200412,200416..200421,
200443..200445,200506..200508,200593..200598,
200602..200604,200665..200673,200677..200682,
200815..200817)
/locus_tag="PPE_00175"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:119329"
misc_feature order(200269..200274,200281..200286,200290..200292,
200299..200304,200311..200316,200323..200328,
200347..200349,200353..200355,200365..200379,
200386..200388,200392..200394,200428..200442,
200650..200652,200695..200697,200707..200709,
200779..200784,200791..200796,200800..200808,
200812..200817,201025..201027,201040..201042,
201049..201054,201058..201084,201088..201090,
201094..201099,201103..201117,201121..201123,
201127..201129,201157..201162,201166..201180,
201184..201189,201196..201219,201262..201267,
201271..201291)
/locus_tag="PPE_00175"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:119329"
misc_feature order(200434..200436,200440..200442,200740..200742,
200815..200817,201010..201015,201100..201102,
201112..201117,201133..201135,201274..201276,
201280..201282,201289..201291)
/locus_tag="PPE_00175"
/note="product binding site; other site"
/db_xref="CDD:119329"
misc_feature order(200440..200442,200740..200742,200806..200808,
200815..200817,201010..201015,201100..201102,
201112..201117,201133..201135,201274..201276,
201280..201282,201289..201291)
/locus_tag="PPE_00175"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119329"
misc_feature order(200806..200808,200815..200817,201112..201114,
201289..201291)
/locus_tag="PPE_00175"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:119329"
misc_feature 201010..201015
/locus_tag="PPE_00175"
/note="catalytic residues [active]"
/db_xref="CDD:119329"
gene 201344..201952
/locus_tag="PPE_00176"
/db_xref="GeneID:9772935"
CDS 201344..201952
/locus_tag="PPE_00176"
/EC_number="4.2.1.19"
/note="COGMatches:COG0131; PfamMatches:PF00475;
PrositeMatches:PS00954, PS00955; go_process: histidine
biosynthesis (GO:0000105)"
/codon_start=1
/transl_table=11
/product="imidazoleglycerol-phosphate dehydratase (IGPD)"
/protein_id="YP_003868599.1"
/db_xref="GI:308066994"
/db_xref="GeneID:9772935"
/translation="MGNENNVTGRTGSVSRKTNETDIQLSFAVDGTGQAEIETDVPFL
NHMLDLFTKHGQFDLNVQARGDVDIDDHHTVEDIGICLGQTLLEALGDKKGIKRYASV
FVPMDEALAQVVIDLSNRPHFEYRAEYPSQQVGSFSTELVHEFLWKFALEARMTLHVI
VHYGQNTHHMIEAVFKALGRALDEATSIDPRVTGVPSTKGVL"
misc_feature 201371..201949
/locus_tag="PPE_00176"
/note="imidazoleglycerol-phosphate dehydratase; Validated;
Region: hisB; PRK00951"
/db_xref="CDD:179179"
misc_feature 201377..201949
/locus_tag="PPE_00176"
/note="Imidazoleglycerol-phosphate dehydratase; Region:
IGPD; cd07914"
/db_xref="CDD:153419"
misc_feature order(201401..201403,201479..201481,201491..201493,
201500..201505,201557..201562,201569..201571,
201635..201637,201659..201664,201701..201703,
201773..201775,201845..201850,201857..201859)
/locus_tag="PPE_00176"
/note="putative active site pocket [active]"
/db_xref="CDD:153419"
misc_feature order(201467..201472,201479..201481,201545..201553,
201557..201562,201734..201748,201755..201757,
201761..201763,201770..201775,201836..201850)
/locus_tag="PPE_00176"
/note="4-fold oligomerization interface [polypeptide
binding]; other site"
/db_xref="CDD:153419"
misc_feature order(201479..201481,201557..201562,201569..201571,
201773..201775,201845..201850,201857..201859)
/locus_tag="PPE_00176"
/note="metal binding residues [ion binding]; metal-binding
site"
/db_xref="CDD:153419"
misc_feature order(201632..201634,201638..201640,201644..201652,
201656..201664,201668..201673,201683..201691,
201701..201703,201707..201709,201809..201811,
201815..201817,201821..201823,201827..201829,
201881..201883,201890..201892,201908..201910)
/locus_tag="PPE_00176"
/note="3-fold/trimer interface [polypeptide binding];
other site"
/db_xref="CDD:153419"
gene 201956..202585
/locus_tag="PPE_00177"
/db_xref="GeneID:9772936"
CDS 201956..202585
/locus_tag="PPE_00177"
/EC_number="2.4.2.-"
/note="COGMatches:COG0118; PfamMatches:PF00117;
PrositeMatches:PS00442; go_fucntion: catalytic activity
(GO:0003824)"
/codon_start=1
/transl_table=11
/product="imidazole glycerol phosphate synthase subunit
HisH"
/protein_id="YP_003868600.1"
/db_xref="GI:308066995"
/db_xref="GeneID:9772936"
/translation="MSIAIVDYGRGNLHSVSKAVERLGYEAVVTGDAQVIRSSCGVIL
PGVGAFGDAMEHLRSSGLDRVIQEVASAGQPLLGVCLGMQLLFTRGEEYGSHEGLNIL
PGEVVRFAPDLGVKVPHMGWNRLRMTQPDHPLLQGLEEGHVYFVHSYHAKPEVESDLL
AVTDYGGPVTAIVGRGHVYGMQFHPEKSGEMGMQLLRQFLELAEAEKRA"
misc_feature 201962..202573
/locus_tag="PPE_00177"
/note="imidazole glycerol phosphate synthase subunit HisH;
Provisional; Region: hisH; PRK13141"
/db_xref="CDD:183868"
misc_feature 201962..202555
/locus_tag="PPE_00177"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in imidazole glycerol phosphate synthase (IGPS);
Region: GATase1_IGP_Synthase; cd01748"
/db_xref="CDD:153219"
misc_feature order(202076..202099,202187..202201,202505..202507,
202511..202513)
/locus_tag="PPE_00177"
/note="putative active site [active]"
/db_xref="CDD:153219"
misc_feature 202076..202099
/locus_tag="PPE_00177"
/note="oxyanion strand; other site"
/db_xref="CDD:153219"
misc_feature order(202193..202195,202505..202507,202511..202513)
/locus_tag="PPE_00177"
/note="catalytic triad [active]"
/db_xref="CDD:153219"
gene 202681..203412
/gene="hisA"
/locus_tag="PPE_00178"
/db_xref="GeneID:9772937"
CDS 202681..203412
/gene="hisA"
/locus_tag="PPE_00178"
/EC_number="5.3.1.16"
/note="TIGRFAMsMatches:TIGR00007; COGMatches:COG0106;
PfamMatches:PF00977; go_process: histidine biosynthesis
(GO:0000105)"
/codon_start=1
/transl_table=11
/product="1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase"
/protein_id="YP_003868601.1"
/db_xref="GI:308066996"
/db_xref="GeneID:9772937"
/translation="MFTIYPAIDIRNGKCVRLVQGDYNQETIYNENPVEVAQEWERLG
GSYIHLVDLDGAKAGQPVNDELIGRIASAVQVPVQVGGGLRTREHVERLLSLGVSRVI
LGTAAIEDRAFTEAVLGTYGDRIAIGLDARNGYVATRGWLETSEVRADELAAELASKG
AETFIFTDISRDGMMQGPNVEAIVALAKSSGRTVIASGGVSKMDDLITLSTYAKEGVG
GAIVGKALYTGSIDLQVAVQAVAKA"
misc_feature 202690..203394
/gene="hisA"
/locus_tag="PPE_00178"
/note="HisA. Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase catalyzes
the fourth step in histidine biosynthesis, an
isomerisation of the aminoaldose moiety of ProFAR to the
aminoketose of PRFAR (N-(5'-phospho-D-1...; Region: HisA;
cd04732"
/db_xref="CDD:73394"
misc_feature 202690..203385
/gene="hisA"
/locus_tag="PPE_00178"
/note="phosphoribosylformimino-5-aminoimidazole
carboxamide ribotide isomerase; Region: TIGR00007"
/db_xref="CDD:161661"
misc_feature order(202705..202707,202825..202827,203068..203070)
/gene="hisA"
/locus_tag="PPE_00178"
/note="catalytic residues [active]"
/db_xref="CDD:73394"
gene 203424..204182
/locus_tag="PPE_00179"
/db_xref="GeneID:9772938"
CDS 203424..204182
/locus_tag="PPE_00179"
/EC_number="4.1.3.-"
/note="COGMatches:COG0107; PfamMatches:PF00977;
go_process: histidine biosynthesis (GO:0000105)"
/codon_start=1
/transl_table=11
/product="imidazole glycerol phosphate synthase subunit
HisF"
/protein_id="YP_003868602.1"
/db_xref="GI:308066997"
/db_xref="GeneID:9772938"
/translation="MLAKRIIPCLDVKDGRVVKGVNFVNLRDAGDPVELAALYDREGA
DEIVFLDISASVEGRATMEEVVRQTAGEIAIPFTVGGGISHVDDMKRILRAGADKIGV
NTAAVRNPQLIAEGARSFGSQCIVVAIDAKYNEAWGEWEVYTHGGRTPSGIRALAWAK
EAEQLGAGEILLTSMNADGTKDGFDLPLTSAVSDTVGIPVIASGGAGKQEHFYDVFTA
GKADAGLAATIFHYKEIGIPELKRDLKRRGVEIR"
misc_feature 203433..204164
/locus_tag="PPE_00179"
/note="The cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). Imidazole glycerol phosphate synthase
(IGPS) catalyzes the fifth step of histidine biosynthesis,
the formation of the imidazole ring. IGPS converts
N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731"
/db_xref="CDD:73393"
misc_feature 203436..204128
/locus_tag="PPE_00179"
/note="Histidine biosynthesis protein; Region:
His_biosynth; pfam00977"
/db_xref="CDD:201535"
misc_feature order(203478..203480,203571..203573,203667..203669,
203730..203735,203805..203807,203811..203813,
203859..203861,203940..203942,203955..203960,
204030..204038,204102..204107)
/locus_tag="PPE_00179"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73393"
misc_feature order(203541..203543,203556..203558,203622..203624,
203634..203636,203643..203645,203649..203651,
203706..203708,203715..203720,203790..203792,
203928..203930,204012..204014,204087..204089)
/locus_tag="PPE_00179"
/note="glutamase interaction surface [polypeptide
binding]; other site"
/db_xref="CDD:73393"
gene 204179..204919
/locus_tag="PPE_00180"
/db_xref="GeneID:9772939"
CDS 204179..204919
/locus_tag="PPE_00180"
/EC_number="3.5.4.19"
/EC_number="3.6.1.31"
/note="COGMatches:COG0139; PfamMatches:PF01502, PF01503;
go_process: histidine biosynthesis (GO:0000105)"
/codon_start=1
/transl_table=11
/product="bifunctional phosphoribosyl-AMP
cyclohydrolase/phosphoribosyl-ATP pyrophosphatase"
/protein_id="YP_003868603.1"
/db_xref="GI:308066998"
/db_xref="GeneID:9772939"
/translation="MSNELNQRLSLEQILDNVRWNEAGLVSAIVQDDATLQVLTLAYM
NRESLKLSLESGETWFWSRSRQELWHKGATSGNTQKITSIQLDCDGDALLVRVIPSGP
ACHTGATSCFFRDISAPGTAVAPVAENAGDHTLVNQTDDISSASADRFEVLAQLEAII
KEREETRPEGAYTTYLFDKGVDKILKKVGEEASETIIAAKNKDNDELRLEVSDLIYHL
LVLLQERKLPLDDVLTELNRRHERPRRD"
misc_feature 204212..204898
/locus_tag="PPE_00180"
/note="bifunctional phosphoribosyl-AMP
cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein;
Reviewed; Region: PRK02759"
/db_xref="CDD:179470"
misc_feature 204212..204526
/locus_tag="PPE_00180"
/note="phosphoribosyl-AMP cyclohydrolase; Reviewed;
Region: hisI; PRK00051"
/db_xref="CDD:178825"
misc_feature 204635..204886
/locus_tag="PPE_00180"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) MazG-like domain found in Escherichia coli
phosphoribosyl-ATP pyrophosphohydrolase (HisIE or
PRATP-PH) and its homologs; Region: NTP-PPase_HisIE_like;
cd11534"
/db_xref="CDD:212141"
misc_feature order(204749..204751,204758..204760,204806..204808,
204815..204817)
/locus_tag="PPE_00180"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212141"
gene 204956..205780
/locus_tag="PPE_00181"
/db_xref="GeneID:9772940"
CDS 204956..205780
/locus_tag="PPE_00181"
/EC_number="3.1.3.15"
/note="COGMatches:COG1387; PfamMatches:PF02811"
/codon_start=1
/transl_table=11
/product="histidinol-phosphatase"
/protein_id="YP_003868604.1"
/db_xref="GI:308066999"
/db_xref="GeneID:9772940"
/translation="MKIDYHTHHARCGHAIGSLEEYVQQGIRLGLNQLGLSDHMPLLH
VKPADYYPEMAMPMEELPRYVEECLELKERFKGQIDIRVGLEGDYIEGWEREIEDIIT
AYPWDYVIGSVHFLGEWDVTDFRQVHHWEGRNVLEVYRTYYDAVSKAAATGLYDIMGH
LDVIKRFGYHPKSGEMEELRELERSALSAVARSGRAMELNASGLSKPCAEMFPSRRML
EEAFSLGIPLTVGSDAHDPAKLSEHLEKARALLYEVGYRELAVFQHRERSLVPLTL"
misc_feature 204956..205771
/locus_tag="PPE_00181"
/note="histidinol-phosphatase; Provisional; Region:
PRK07328"
/db_xref="CDD:180932"
gene 206018..207787
/locus_tag="PPE_00182"
/db_xref="GeneID:9772941"
CDS 206018..207787
/locus_tag="PPE_00182"
/note="COGMatches:COG0457; PfamMatches:PF00515, PF07719;
PrositeMatches:PS50005, PS50293"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868605.1"
/db_xref="GI:308067000"
/db_xref="GeneID:9772941"
/translation="MKGKHLRVSEPSPKIIALRFDASFFFEKAVRSLDRNHYDKALKY
FRKAVEYEPDNPVNHCNMAGILSEMGDYAGSNEILSSVLSDVDSSMTECYFYMANNYA
NMEQFEEAEKALVTYLEEDEEGQFLDEAEEMMELLYYELDRPTKLNRIKARQGVVEHD
QARVLLEEGKFAQAAQLLKQISEEQPDMFAARNNLALAYYYMGLFQNAKATIIQVLED
EPGNLHALCNLAIFYQHEGGGPELDRLVQTLAVTIPFQEEQVFKLATTMGILGRHEEA
YRHFRRLLHGDGENNADASLYHYTAVAASNTGRYAEARRLWSHLQKQDASSEVPRFFL
SRLEELQQEGTPLQVLSYHYHLPFEEQFRMWEKFGADQVPDSMKKDPLIRSSFFWALR
HGDRATQHQVIQALSLIGDDEVRQALESFVEDPDQEDELKRRALQVLQELAEQGEQKM
YPETEHSDQLEVENDPYTIEGDVSASPVDPQWQAVLDKVLTVMSKPSDPVMQHDLKSL
WLEYLDRLAPEVPMVQHTEGWAAALEYLTAKMHHHSVTYQEVADRYGISVSTVSRYAR
QIDSVCGIKQKLKQPLSTFKKQV"
misc_feature 206078..>206230
/locus_tag="PPE_00182"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature 206090..206386
/locus_tag="PPE_00182"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(206093..206098,206105..206110,206195..206200,
206204..206209,206216..206221,206300..206305,
206312..206317,206324..206329)
/locus_tag="PPE_00182"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(206102..206104,206138..206140,206150..206152,
206159..206161,206204..206206,206240..206242,
206255..206257,206264..206266,206309..206311,
206345..206347,206357..206359,206366..206368)
/locus_tag="PPE_00182"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature <207185..207337
/locus_tag="PPE_00182"
/note="HEAT repeats; Region: HEAT_2; pfam13646"
/db_xref="CDD:205823"
gene 207827..208780
/gene="trxB1"
/locus_tag="PPE_00183"
/db_xref="GeneID:9772942"
CDS 207827..208780
/gene="trxB1"
/locus_tag="PPE_00183"
/EC_number="1.8.1.9"
/note="TIGRFAMsMatches:TIGR01292; COGMatches:COG0492;
PfamMatches:PF07992, PF00070; PrositeMatches:PS00573;
go_process: electron transport (GO:0006118)"
/codon_start=1
/transl_table=11
/product="thioredoxin reductase (TRXR)"
/protein_id="YP_003868606.1"
/db_xref="GI:308067001"
/db_xref="GeneID:9772942"
/translation="MYKSIIIGTGPAGYTAAIYLARANMNPLIIEGMQPGGQLTTTTE
IENFPGFEQGILGPELMDNMRKQAERFGAEFTSGWVEEVDFSKRPFKVKVEGKGIIEA
ESVIIATGASAKYLGIPGEQDNVGRGVSTCATCDGFFFRGKKIVVVGGGDSAMEEASF
LTRFASSVTLVHRRDELRASKIMQDRARENEKVHWALNRTPLEVVTGEAGLKGLKVHN
NETNQDELIEVDGVFVAIGHTPNTGFLNGQIHTDEHGYIVVKPGTTETNIPGVFACGD
VQDNRYRQAITAAGTGCMAAMDCEKYLEGSAVHDWSETLDQ"
misc_feature 207839..208735
/gene="trxB1"
/locus_tag="PPE_00183"
/note="thioredoxin-disulfide reductase; Region:
TRX_reduct; TIGR01292"
/db_xref="CDD:200090"
misc_feature 207839..>207943
/gene="trxB1"
/locus_tag="PPE_00183"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 208256..208486
/gene="trxB1"
/locus_tag="PPE_00183"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
gene 209073..210023
/locus_tag="PPE_00185"
/db_xref="GeneID:9772943"
CDS 209073..210023
/locus_tag="PPE_00185"
/EC_number="2.7.1.2"
/note="COGMatches:COG1940; PfamMatches:PF00480;
PrositeMatches:PS01125"
/codon_start=1
/transl_table=11
/product="glucokinase"
/protein_id="YP_003868607.1"
/db_xref="GI:308067002"
/db_xref="GeneID:9772943"
/translation="MSESIYVGVDLGGTAIKVGICNENGQLLHTYEGPTETDKGVDVV
IGNIEKYVRHIVEQSPYEWDQLKGVGAGVAGFTNVRDGIIVLAPNIGFRDVPIRALLE
NRIGKPVKIDNDANVAALGEAWAGAGKGIENCVCYTLGTGVGGGIIINGKIYQGSSGM
AGEIGHISVVPDLEAIQCGCGKMGCLETVSSATGIIRMAKDAVERGDRTSLALEDQIA
AKEVFDAAKAGDEVALRIVNRAAFYLGKSMAAVAAVLNPELFIIGGGVSKAGDFLFEE
MRRVYAKLAPEPLQKGVYIVPAVLGNDAGIVGAAGLLLRS"
misc_feature 209091..210008
/locus_tag="PPE_00185"
/note="ROK family protein (putative glucokinase); Region:
ROK_glcA_fam; TIGR00744"
/db_xref="CDD:162017"
misc_feature 209091..>209459
/locus_tag="PPE_00185"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature order(209100..209111,209115..209117,209121..209123,
209412..209414)
/locus_tag="PPE_00185"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene 210089..210988
/locus_tag="PPE_00186"
/db_xref="GeneID:9772944"
CDS 210089..210988
/locus_tag="PPE_00186"
/note="COGMatches:COG1660; PfamMatches:PF03668"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868608.1"
/db_xref="GI:308067003"
/db_xref="GeneID:9772944"
/translation="MTDNLKNAAPWATLIIITGMSGAGKTIAVQSLEDLGFFCVDNLP
PVLIPKFAELIEQSNGKIGKVALVIDLRGREFFTALSESLNYIKDHFTIHCEILFLNA
NDGVLVQRYKESRRRHPLAPDGMPLDGIRLERKMLEELKSSATQVIDTSVMKPATLKA
RIISRFSHLESSMLSVNITSFGFKYGIPIDADLIFDVRFLPNPHYVDQLRPHTGQDSD
VYDYVMKWPETQAFLTKLLDMLHFLIPQYRKEGKSQVIIGIGCTGGKHRSVAISEYLG
KMLGASETESVSVSHRDADRDRH"
misc_feature 210125..210979
/locus_tag="PPE_00186"
/note="Predicted P-loop-containing kinase [General
function prediction only]; Region: COG1660"
/db_xref="CDD:31846"
misc_feature 210128..210982
/locus_tag="PPE_00186"
/note="glmZ(sRNA)-inactivating NTPase; Provisional;
Region: PRK05416"
/db_xref="CDD:180064"
gene 211001..211987
/locus_tag="PPE_00187"
/db_xref="GeneID:9772945"
CDS 211001..211987
/locus_tag="PPE_00187"
/note="COGMatches:COG0391; PfamMatches:PF01933"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868609.1"
/db_xref="GI:308067004"
/db_xref="GeneID:9772945"
/translation="MKETGSQRERPRIVVMGGGTGLSVMLRGLKQKPLDITAIVTVAD
DGGSSGILRSELQMPPPGDIRNVLTALADVEPVMSDMLKYRFGAGSGLSGHSLGNLIL
AAMTDISGDFVTAVRELSRVFAVRGRVLPAAEEGVVLSAEMEDGTVIIGESKIPEAGG
RIKRVFLEPTHVEPLPEAVEAINEADAILIGPGSLYTSILPNLLVPKLAEAVVKSDAI
KIFVCNVMTQPGETDGYTVGDHLQAIFEHVGHHLFDYVIVNNGEIPPQVQEMYAEQGA
KPVQVDMGELTDRGYKVVADTLVLFRTYLRHDADKLSQHIYQLVQNWILRRR"
misc_feature 211037..211954
/locus_tag="PPE_00187"
/note="family of mostly uncharacterized proteins similar
to B.subtilis YvcK; Region: YvcK_like; cd07187"
/db_xref="CDD:132873"
misc_feature 211037..211900
/locus_tag="PPE_00187"
/note="Uncharacterized protein family UPF0052; Region:
UPF0052; pfam01933"
/db_xref="CDD:202052"
misc_feature order(211052..211060,211577..211582,211592..211594,
211679..211684)
/locus_tag="PPE_00187"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:132873"
misc_feature order(211130..211132,211142..211144,211184..211186,
211193..211195,211295..211297)
/locus_tag="PPE_00187"
/note="putative substrate binding pocket [chemical
binding]; other site"
/db_xref="CDD:132873"
misc_feature order(211274..211276,211289..211291,211298..211303,
211310..211315,211319..211324,211352..211354,
211361..211366)
/locus_tag="PPE_00187"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132873"
gene 211993..212937
/locus_tag="PPE_00188"
/db_xref="GeneID:9772946"
CDS 211993..212937
/locus_tag="PPE_00188"
/note="COGMatches:COG1481; PfamMatches:PF02650"
/codon_start=1
/transl_table=11
/product="FeS assembly ATPase SufC"
/protein_id="YP_003868610.1"
/db_xref="GI:308067005"
/db_xref="GeneID:9772946"
/translation="MSFAAQTKKELTMIESQSCCEKAELSALIRMLGSVQLSNKRVIL
DVSTENAAIARRIYSLIKKHFQLHIELLVRKKMRLKKNNVYIVRIPNGVQQLLKDLYI
VSEGFLFTDGINRDIVRKNCCKRAYLRGAFMAGGSVNNPEGSSYHLEISSMYEEHCQA
LVDLANEFHLNARCIERKKGFILYIKEGEKIIELLSIIGAHQALFKFEDVRIMRDMRN
SVNRIVNCETANLNKTIGAAVRQIENIKLLEREVGLETLPDKLREVAEIRLAHPDLNL
KEVGEMLKGVVSKSGVNHRLRKIDEMADKIRGENGLIP"
misc_feature 211993..212913
/locus_tag="PPE_00188"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG1481"
/db_xref="CDD:31670"
misc_feature 212044..212301
/locus_tag="PPE_00188"
/note="Sporulation Regulator WhiA N terminal; Region:
WhiA_N; pfam10298"
/db_xref="CDD:150898"
gene 213074..213343
/locus_tag="PPE_00189"
/db_xref="GeneID:9772947"
CDS 213074..213343
/locus_tag="PPE_00189"
/note="COGMatches:COG1925; PfamMatches:PF00381;
PrositeMatches:PS00369, PS00589; go_process:
phosphoenolpyruvate-dependent sugar phosphotransferase
system (GO:0009401)"
/codon_start=1
/transl_table=11
/product="HPr-like protein crh (Catabolite repression
HPr)"
/protein_id="YP_003868611.1"
/db_xref="GI:308067006"
/db_xref="GeneID:9772947"
/translation="MSKHPVVVRLKTGLHARPAALFVQEANKYSSEIFVEKDDKKVNA
KSIMGIMSLAISTGTEINISAEGADAEQAVNALVSLVSKVELENQ"
misc_feature 213089..213316
/locus_tag="PPE_00189"
/note="Histidine-containing phosphocarrier protein
(HPr)-like proteins. HPr is a central component of the
bacterial phosphoenolpyruvate sugar phosphotransferase
system (PTS). The PTS catalyses the phosphorylation of
sugar substrates during their translocation...; Region:
PTS-HPr_like; cd00367"
/db_xref="CDD:29444"
misc_feature 213089..213097
/locus_tag="PPE_00189"
/note="dimerization domain swap beta strand [polypeptide
binding]; other site"
/db_xref="CDD:29444"
misc_feature order(213113..213115,213119..213124,213128..213133,
213143..213145,213152..213154,213206..213217,
213224..213229)
/locus_tag="PPE_00189"
/note="regulatory protein interface [polypeptide binding];
other site"
/db_xref="CDD:29444"
misc_feature 213116..213118
/locus_tag="PPE_00189"
/note="active site"
/db_xref="CDD:29444"
misc_feature 213209..213211
/locus_tag="PPE_00189"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:29444"
gene 213616..214377
/locus_tag="PPE_00190"
/db_xref="GeneID:9772948"
CDS 213616..214377
/locus_tag="PPE_00190"
/note="COGMatches:COG2968; PfamMatches:PF04402"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868612.1"
/db_xref="GI:308067007"
/db_xref="GeneID:9772948"
/translation="MRLWTKTVATAVLAGALMAGGVAGGLWTGADRAYAASTASTVNG
VINVTGSGEVLAKPDIAYLSIGVQSEGNTAAAAQKANATKLNKVTQLLKEKWSISADD
IQTSQFYVQPNYTYNEKEGQKLKGYTANHTLSVKYRDLDKIGQLLDEATKSGANNVDN
VRFSVENPSTYEEEAITKALGSAQSKASAVAKAAKRGLGALVSVTVDGGEAQIFTQRE
NAMSKSLLDVAGGGTEIQSGQVTVKVQVSAQYEMN"
misc_feature 213751..214371
/locus_tag="PPE_00190"
/note="Protein of unknown function (DUF541); Region:
SIMPL; pfam04402"
/db_xref="CDD:203001"
gene 214615..215724
/locus_tag="PPE_00191"
/db_xref="GeneID:9772949"
CDS 214615..215724
/locus_tag="PPE_00191"
/note="PfamMatches:PF07833"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868613.1"
/db_xref="GI:308067008"
/db_xref="GeneID:9772949"
/translation="MSKYAKKWGSALLAAGILAGVAVVPVSYIQAASTKQQQAATQQP
GITIQWNGKTLPAKGVQVNGSTMIPVAALRDSLGIPVSYDAKATTYTVGSGYNKLYIM
ASSSDAYVNVNGINTRSMDAKQIAGKLYIPMSLLKDYLGIDAQWNAAQKTVTLSKSQL
NPITIASQTLPASSSAKVSYKIKYPQISGSQLNPEAQQAINNALKKHAEGILAAGKKM
MAEGEATTERPYEFGNDFAIAYNKDGILSVIIQDYSYTGGAHGMTTRKGYTFSLADGK
LLQLSDVLKANPNYKKFLNADLKKKVDGLQGGEGFGKFKELAADQNYYVTNSGVTILF
DLYDYAPYAYGIPEFTYSFGQLLPQGGKPFAGQNE"
misc_feature 214798..215079
/locus_tag="PPE_00191"
/note="Copper amine oxidase N-terminal domain; Region:
Cu_amine_oxidN1; pfam07833"
/db_xref="CDD:203776"
misc_feature 215131..215406
/locus_tag="PPE_00191"
/note="Domain of unknown function (DUF4163); Region:
DUF4163; pfam13739"
/db_xref="CDD:205913"
misc_feature 215452..215673
/locus_tag="PPE_00191"
/note="Protein of unknown function (DUF3298); Region:
DUF3298; pfam11738"
/db_xref="CDD:204726"
gene complement(215849..216430)
/gene="clpP1"
/locus_tag="PPE_00192"
/db_xref="GeneID:9772950"
CDS complement(215849..216430)
/gene="clpP1"
/locus_tag="PPE_00192"
/EC_number="3.4.21.92"
/note="TIGRFAMsMatches:TIGR00493; COGMatches:COG0740;
PfamMatches:PF00574; PrositeMatches:PS00381, PS00382;
go_process: proteolysis (GO:0006508)"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease proteolytic
subunit(endopeptidase Clp)"
/protein_id="YP_003868614.1"
/db_xref="GI:308067009"
/db_xref="GeneID:9772950"
/translation="MVVEQSNRGERAYDIYSRLLKDRIILLGSDVNDVVANSIIAQML
FLAAEDPEKDIHLYINSPGGSITAGMAIFDTMQYIKPDVSTICVGMAASMGAFLLNAG
AKGKRFALPNSEIMIHQPLGGAQGQATDIEIRARRILKMRDKLNRILADRTGQPLERI
EKDTDRDYFMSADDAKEYGIIDKVLTSSSPEGV"
misc_feature complement(215870..216412)
/gene="clpP1"
/locus_tag="PPE_00192"
/note="Clp protease; Region: CLP_protease; pfam00574"
/db_xref="CDD:201316"
misc_feature complement(215879..216391)
/gene="clpP1"
/locus_tag="PPE_00192"
/note="Caseinolytic protease (ClpP) is an ATP-dependent,
highly conserved serine protease; Region: S14_ClpP_2;
cd07017"
/db_xref="CDD:132928"
misc_feature complement(order(215924..215926,215930..215932,
215999..216001,216005..216007,216011..216013,
216020..216022,216062..216073,216089..216091,
216095..216097,216161..216163,216185..216187,
216197..216202,216209..216211,216218..216220,
216230..216232,216251..216253,216296..216298,
216305..216310,216317..216322,216347..216349,
216353..216355))
/gene="clpP1"
/locus_tag="PPE_00192"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:132928"
misc_feature complement(order(215930..215932,216077..216079,
216152..216154))
/gene="clpP1"
/locus_tag="PPE_00192"
/note="active site residues [active]"
/db_xref="CDD:132928"
gene complement(216656..216730)
/locus_tag="PPE_00193"
/db_xref="GeneID:9772951"
tRNA complement(216656..216730)
/locus_tag="PPE_00193"
/product="tRNA-Arg"
/db_xref="GeneID:9772951"
gene 217000..218037
/locus_tag="PPE_00194"
/db_xref="GeneID:9772952"
CDS 217000..218037
/locus_tag="PPE_00194"
/note="COGMatches:COG2390; PfamMatches:PF04198;
go_fucntion: transcription regulator activity
(GO:0030528)"
/codon_start=1
/transl_table=11
/product="Central glycolytic genes regulator"
/protein_id="YP_003868615.1"
/db_xref="GI:308067010"
/db_xref="GeneID:9772952"
/translation="MRKILEIQKQLLPDLMDVLKKRYTILHQIMLSDVVGRRTLAASL
NMTERVLRAETDLLKAQGLIEIESVGMKVSKAGLDLLEQLEPIANNLFGLSQLEDQIR
QAYGLRKVVVVPGDSDASPLTKQELGRAGAKALLSVMDDEDVVAVTGGTTIADVAEQL
ALPSNGPLKGGWFVPARGGLGESMEMQANTIASTMARKVGAQYRLLHVPDLLSNHAYN
SLLEDTNIQDILNLIRESRIIIHGIGNAIAMAHRRKLDPETFAQISSEGAVAESFGYY
FNEDGVVVHRMLTLGLRLEDIRRTDTVLGVAGGKSKAAAIHAVLRFGQEDILVTDEGA
AAEIVSHYLNG"
misc_feature 217030..218022
/locus_tag="PPE_00194"
/note="Transcriptional regulator, contains sigma
factor-related N-terminal domain [Transcription]; Region:
DeoR; COG2390"
/db_xref="CDD:32535"
misc_feature 217267..218019
/locus_tag="PPE_00194"
/note="Putative sugar-binding domain; Region: Sugar-bind;
pfam04198"
/db_xref="CDD:202929"
gene 218131..219141
/locus_tag="PPE_00195"
/db_xref="GeneID:9772953"
CDS 218131..219141
/locus_tag="PPE_00195"
/EC_number="1.2.1.12"
/note="COGMatches:COG0057; PfamMatches:PF00044, PF02800;
PrositeMatches:PS00071; go_process: glycolysis
(GO:0006096)"
/codon_start=1
/transl_table=11
/product="glyceraldehyde-3-phosphate dehydrogenase"
/protein_id="YP_003868616.1"
/db_xref="GI:308067011"
/db_xref="GeneID:9772953"
/translation="MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDSKMLAHL
LKYDTTQGTFQGEVEVHDGFFKVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTT
KEAAEKHLKGGAKKVVISAPATGDMKTVVYNVNHEILDGTETVISGASCTTNCLAPMA
KTLQDKFGIIEGLMTTIHAYTGDQNTLDAPHAKGDFRRARAAAENIIPNTTGAAKAIG
LVIPELKGKLDGAAQRVPVATGSLTELVTVLEKNVTAEEINAAMKEASDPDTFGYTED
QIVSSDIKGITFGSLFDATQTKVLTVGDKQLVKTVAWYDNEMSYTAQLIRTLEYFAKL
AK"
misc_feature 218137..218583
/locus_tag="PPE_00195"
/note="Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain; Region: Gp_dh_N; smart00846"
/db_xref="CDD:197914"
misc_feature 218140..219108
/locus_tag="PPE_00195"
/note="glyceraldehyde-3-phosphate dehydrogenase, type I;
Region: GAPDH-I; TIGR01534"
/db_xref="CDD:211668"
misc_feature 218596..219072
/locus_tag="PPE_00195"
/note="Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain; Region: Gp_dh_C; pfam02800"
/db_xref="CDD:202402"
gene 219262..220443
/locus_tag="PPE_00196"
/db_xref="GeneID:9772954"
CDS 219262..220443
/locus_tag="PPE_00196"
/EC_number="2.7.2.3"
/note="COGMatches:COG0126; PfamMatches:PF00162;
PrositeMatches:PS00111; go_process: glycolysis
(GO:0006096)"
/codon_start=1
/transl_table=11
/product="phosphoglycerate kinase"
/protein_id="YP_003868617.1"
/db_xref="GI:308067012"
/db_xref="GeneID:9772954"
/translation="MNKKSVRDIELNGKRVFVRVDFNVPVEDGKITDDKRIRETLPTI
NYLIEKGAKVILASHFGRPKGQVVESMRLTPVGVRLSELLKKPVVKVDESVGEAVKAK
VAELQNGDVLLLENVRFYAGEEKNDPELAKQFAELADVFVNDAFGAAHRAHASTEGIA
HILPAVSGLLMERELSVIGKALSNPDRPFTAIIGGSKVKDKIDVIDNLLNIADNVIIG
GGLTYTFFKAQGHEVGQSLLDESKLDVALGFIEKAKKLGKNFYLPVDIVVSDDFSATA
NTDIVDIDGIPADWEGVDIGPKTRKIYADVIKNSKLVVWNGPMGVFEIEPFAGGTREV
AEACATTEAYTIIGGGDSAAAAEKFHLADKMDHISTGGGASLEFMEGKALPGVVALND
K"
misc_feature 219274..220407
/locus_tag="PPE_00196"
/note="Phosphoglycerate kinase; Region: PGK; pfam00162"
/db_xref="CDD:201047"
misc_feature 219277..220437
/locus_tag="PPE_00196"
/note="Phosphoglycerate kinase (PGK) is a monomeric enzyme
which catalyzes the transfer of the high-energy phosphate
group of 1,3-bisphosphoglycerate to ADP, forming ATP and
3-phosphoglycerate. This reaction represents the first of
the two substrate-level...; Region:
Phosphoglycerate_kinase; cd00318"
/db_xref="CDD:29400"
misc_feature order(219322..219324,219328..219330,219367..219369,
219436..219438,219613..219615)
/locus_tag="PPE_00196"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29400"
misc_feature order(219805..219816,220363..220371)
/locus_tag="PPE_00196"
/note="hinge regions; other site"
/db_xref="CDD:29400"
misc_feature order(219919..219921,220135..220137,220207..220209,
220213..220215,220219..220230,220309..220317)
/locus_tag="PPE_00196"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:29400"
misc_feature 220312..220314
/locus_tag="PPE_00196"
/note="catalytic site [active]"
/db_xref="CDD:29400"
gene 220503..221255
/gene="tpiA"
/locus_tag="PPE_00197"
/db_xref="GeneID:9772955"
CDS 220503..221255
/gene="tpiA"
/locus_tag="PPE_00197"
/EC_number="5.3.1.1"
/note="TIGRFAMsMatches:TIGR00419; COGMatches:COG0149;
PfamMatches:PF00121; PrositeMatches:PS00171; go_process:
metabolism (GO:0008152)"
/codon_start=1
/transl_table=11
/product="Triosephosphate isomerase (Triose-phosphate
isomerase)"
/protein_id="YP_003868618.1"
/db_xref="GI:308067013"
/db_xref="GeneID:9772955"
/translation="MRTPIIAGNWKMFKTVPEAKTFIEEIKGKAEVAGVESVICAPFT
NLPALVEAVKGTSIKIGAQNLHFAEDGAFTGEISGGMLKDLGVDYVVIGHSERREYFN
ETDETVNKKVHAAFRHGLTPIVCVGEKLEDREAGQTKEVVKVQTVAAFAGLAKDQAAQ
VVVAYEPIWAIGTGKSSTSQDANEVISYIRSLIKELYDENTANAVRIQYGGSVKPENV
TEYLGQSDIDGALVGGASLQPASYIALVEGAK"
misc_feature 220512..221243
/gene="tpiA"
/locus_tag="PPE_00197"
/note="Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually...; Region: TIM; cd00311"
/db_xref="CDD:73362"
misc_feature 220515..221249
/gene="tpiA"
/locus_tag="PPE_00197"
/note="triosephosphate isomerase; Provisional; Region:
PRK14567"
/db_xref="CDD:173031"
misc_feature order(220527..220529,220533..220535,220782..220784,
220998..221000,221016..221018,221136..221138,
221193..221195,221199..221204)
/gene="tpiA"
/locus_tag="PPE_00197"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73362"
misc_feature order(220527..220529,220536..220538,220629..220637,
220641..220643,220650..220652,220689..220691,
220743..220745,220752..220757,220788..220793)
/gene="tpiA"
/locus_tag="PPE_00197"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73362"
misc_feature order(220533..220535,220782..220784,220998..221000)
/gene="tpiA"
/locus_tag="PPE_00197"
/note="catalytic triad [active]"
/db_xref="CDD:73362"
gene 221257..222801
/gene="gpmI"
/locus_tag="PPE_00198"
/db_xref="GeneID:9772956"
CDS 221257..222801
/gene="gpmI"
/locus_tag="PPE_00198"
/EC_number="5.4.2.1"
/note="TIGRFAMsMatches:TIGR01307; COGMatches:COG0696;
PfamMatches:PF06415, PF01676; go_component: cytoplasm
(GO:0005737), go_fucntion: metal ion binding (GO:0046872)"
/codon_start=1
/transl_table=11
/product="2,3-bisphosphoglycerate-independent
phosphoglycerate mutase"
/protein_id="YP_003868619.1"
/db_xref="GI:308067014"
/db_xref="GeneID:9772956"
/translation="MTAPKPVALIIMDGFGLRDTVEGNAVAQANKPNYDRYLQQYPHT
TLTASGEAVGLPEGQMGNSEVGHLNIGAGRIVYQDLTRISKSIREGEFYDNETLVKAV
QHAKKNNTKLHLYGLLSDGGVHSHISHLFAMLDLAKKEGLTEVYIHAFMDGRDVMPDS
GVGFMQQLIAKIQEVGVGKIATVQGRYYAMDRDKRWERVEKSYRAIVYGEGPQYTDPM
EALKESYEKSVFDEFVEPTVIVKADGSPVGLVESNDSVIFLNFRPDRAIQLSQVFTNA
DFRGFDRGPKWPKDLHFVCLTLFSETVEGFVAYEPKNLDNTFGEVLVQNNKKQLRIAE
TEKYPHVTFFFSGGRDVELPGETRILINSPKVATYDLQPEMSAYEVADAAVKEIEADK
HDAIILNFANPDMVGHSGMLEPTIKAVETTDECVGRVVDAVKAKGGVVIIIADHGNAD
MEIDEQGRPFTAHTTNPVPFILTDENIVLREHGILADVAPTLLDLMQLPQPAEMTGKS
MIASRK"
misc_feature 221257..222786
/gene="gpmI"
/locus_tag="PPE_00198"
/note="phosphoglyceromutase; Provisional; Region:
PRK05434"
/db_xref="CDD:180079"
misc_feature 221260..222786
/gene="gpmI"
/locus_tag="PPE_00198"
/note="Phosphoglyceromutase [Carbohydrate transport and
metabolism]; Region: GpmI; COG0696"
/db_xref="CDD:31040"
gene 222865..224151
/gene="eno"
/locus_tag="PPE_00199"
/db_xref="GeneID:9772957"
CDS 222865..224151
/gene="eno"
/locus_tag="PPE_00199"
/EC_number="4.2.1.11"
/note="TIGRFAMsMatches:TIGR01060; COGMatches:COG0148;
PfamMatches:PF03952, PF00113; PrositeMatches:PS00164;
go_component: phosphopyruvate hydratase complex
(GO:0000015)"
/codon_start=1
/transl_table=11
/product="Enolase (2-phosphoglycerate dehydratase)"
/protein_id="YP_003868620.1"
/db_xref="GI:308067015"
/db_xref="GeneID:9772957"
/translation="MTIISDVYAREVLDSRGNPTVEVEVYLESGAIGSAIVPSGASTG
AHEAVELRDNDKSRYLGKGVLQAVKNVNEIIAPEVIGLDAVNQVEIDTLMIKLDGTHN
KGKLGANAILAVSMAVARAAAEALGLPLYTYLGGFNAKQLPVPMMNIVNGGAHADNNV
DVQEFMVLPVGAPTFKEALRVGAEIFHNLKSVLNSKGLNTAVGDEGGFAPNFKSNEEA
LSTIIEAIEKAGYKPGVDVFLGMDVASTEFFKDGKYTLEGEGKSFTSAEFVDLLASWV
DKYPIITIEDGCSEDDWEGWKLLTEKLGNKIQLVGDDLFVTNTERLAKGIDENIGNSI
LIKVNQIGTLTETFDAIELAKRAGYTAVISHRSGESEDSTIADIAVATNAGQIKTGAP
SRTDRIAKYNQLLRIEDQLGELAQYHGLKSFYNLKK"
misc_feature 222865..224145
/gene="eno"
/locus_tag="PPE_00199"
/note="enolase; Provisional; Region: eno; PRK00077"
/db_xref="CDD:178845"
misc_feature 222880..224094
/gene="eno"
/locus_tag="PPE_00199"
/note="Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The reaction
is facilitated by the presence of metal ions; Region:
enolase; cd03313"
/db_xref="CDD:48188"
misc_feature order(222886..222888,222892..222918,222928..222930,
222964..222966,223330..223338,223399..223404,
223411..223416,223423..223428,223465..223470,
223489..223491,223495..223497,223969..223977,
224044..224052,224056..224061,224068..224070,
224077..224082,224089..224091)
/gene="eno"
/locus_tag="PPE_00199"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48188"
misc_feature order(222988..222990,223588..223590,223717..223719,
223798..223800)
/gene="eno"
/locus_tag="PPE_00199"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:48188"
misc_feature order(223327..223329,223477..223479,223873..223875,
223957..223965,224026..224028)
/gene="eno"
/locus_tag="PPE_00199"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:48188"
STS 223895..224080
/gene="eno"
/locus_tag="PPE_00199"
/standard_name="ha3073"
/db_xref="UniSTS:515637"
gene complement(224197..224445)
/locus_tag="PPE_00200"
/db_xref="GeneID:9772958"
CDS complement(224197..224445)
/locus_tag="PPE_00200"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868621.1"
/db_xref="GI:308067016"
/db_xref="GeneID:9772958"
/translation="MQNNTASYMKTCTYHVINSRKLTQNTIFILPQLPVDNNSYTSHS
AIKHLQSYKFSYTSIIQKTDLPAVASRSVLKALSVQTS"
gene 224480..224713
/gene="secG"
/locus_tag="PPE_00201"
/db_xref="GeneID:9772959"
CDS 224480..224713
/gene="secG"
/locus_tag="PPE_00201"
/note="TIGRFAMsMatches:TIGR00810; COGMatches:COG1314;
PfamMatches:PF03840; go_component: integral to membrane
(GO:0016021)"
/codon_start=1
/transl_table=11
/product="protein-export membrane protein secG"
/protein_id="YP_003868622.1"
/db_xref="GI:308067017"
/db_xref="GeneID:9772959"
/translation="MEIFLKVLLVVFSIAVIAVVLLQKGKSAGLSGAISGGAEHLFGK
TKARGMDLILQRATAVLGAGFMIVSVLVAFFAK"
misc_feature 224483..224710
/gene="secG"
/locus_tag="PPE_00201"
/note="Preprotein translocase SecG subunit; Region: SecG;
pfam03840"
/db_xref="CDD:202782"
gene 224903..227527
/locus_tag="PPE_00202"
/db_xref="GeneID:9772960"
CDS 224903..227527
/locus_tag="PPE_00202"
/EC_number="3.1.-.-"
/note="COGMatches:COG0557; PfamMatches:PF00773, PF00575;
PrositeMatches:PS50126, PS01175; go_fucntion: ribonuclease
activity (GO:0004540), go_fucntion: RNA binding
(GO:0003723)"
/codon_start=1
/transl_table=11
/product="ribonuclease R"
/protein_id="YP_003868623.1"
/db_xref="GI:308067018"
/db_xref="GeneID:9772960"
/translation="MITEQQLLDFMRETAYKPMTYQELEQHFDIKDAEDFREFLKLLN
ALEEEGKILLTSTNRYGVPERMDLQRGRLQAHAKGFAFLIPEDREHPDVYIHANDLKS
AMNGDTVLVRVSSKGPAGGRLEGEVVRIVKRAVLQVVGVFQSHEAYGFVLPDDKRINR
DIFIPKTSFNGAVNGQKVVVRIVSYPEGRAAAEGEVLEVLGHKDDPGVDILSVIRKHQ
LPEAFPDEVTEEAEKAPDAITEEEIVRQGRRDLRDKIIVTIDGEDAKDLDDAVNVERL
PNGNYRLGVHIADVGYYVPENSKLDQEAYNRGCSVYLVDRVIPMLPHRLSNGICSLNP
QVDRLTLSCEMEFNEHMKVVKHDIFTSVIKTKERMTYTNVRKILEEEDAELMERYKDL
VDVFGTMKELALKLRANRMRRGAVDFDFDEAKVIVDNEGKAVDIVKRERTIAEQIIEE
FMLAANETVAEHFHWLKVPFLYRIHEDPDPEKLQNFMAFAANFGHQIKGRGNSIHPRA
LQTLLEDIQGTKEQTVLSTMMLRSMKQAKYDAETTGHFGLAAEYYSHFTSPIRRYPDL
VIHRVIREVLENGGALTAERQEYLTARMPDIAQQSSERERVAVDAERDTEQMKKAEYM
LDKVGEEFEGIISSVTSFGMFIELDNTVEGLTRLSALTDDYYHFDEQHMALIGERTSK
VFRIGDEVKVRVARVNMEDYTIDFELVDMKQRQRRERTGGSGQGGGFARGGEGRGKGK
PHEGRDRKGGKDKTGKDRRGGRDAAGKPKEAGSGVGGGGIGTAGRSGRGGGNGAGVGS
ASSFGFGSGKGGYNSPASGASKRRKKTSASGIFIGGAATPGSDARPNGEGAARRKRKN
KGGSGGNSTAGFVRKKKK"
misc_feature 224903..227029
/locus_tag="PPE_00202"
/note="ribonuclease R; Region: RNase_R; TIGR02063"
/db_xref="CDD:200153"
misc_feature 225113..225292
/locus_tag="PPE_00202"
/note="Ribonuclease B OB domain; Region: OB_RNB;
pfam08206"
/db_xref="CDD:203875"
misc_feature 225320..225499
/locus_tag="PPE_00202"
/note="Ribonuclease B OB domain; Region: OB_RNB;
pfam08206"
/db_xref="CDD:203875"
misc_feature 225644..226630
/locus_tag="PPE_00202"
/note="RNB domain; Region: RNB; pfam00773"
/db_xref="CDD:201436"
misc_feature 226784..227029
/locus_tag="PPE_00202"
/note="S1_RNase_R: RNase R C-terminal S1 domain. RNase R
is a processive 3' to 5' exoribonuclease, which is a
homolog of RNase II. RNase R degrades RNA with secondary
structure having a 3' overhang of at least 7 nucleotides.
RNase R and PNPase play an important...; Region:
S1_RNase_R; cd04471"
/db_xref="CDD:88436"
misc_feature order(226811..226813,226835..226837,226865..226867,
226871..226873)
/locus_tag="PPE_00202"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88436"
gene 227808..228287
/gene="smpB"
/locus_tag="PPE_00203"
/db_xref="GeneID:9772961"
CDS 227808..228287
/gene="smpB"
/locus_tag="PPE_00203"
/note="TIGRFAMsMatches:TIGR00086; COGMatches:COG0691;
PfamMatches:PF01668; PrositeMatches:PS01317; go_process:
protein biosynthesis (GO:0006412)"
/codon_start=1
/transl_table=11
/product="SsrA-binding protein"
/protein_id="YP_003868624.1"
/db_xref="GI:308067019"
/db_xref="GeneID:9772961"
/translation="MGKKADGKVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSLRNGR
SNISDAFATIRNGEIHIHNMHISPFEQGNRNNPTDPTRTRKLLLHKEQIRKLIGLSKQ
EGYTIVPLKIYVRNGYAKLLLGLGRGKKQYDKRDAAAKRDAQRDIQRALREKQKIAR"
misc_feature 227844..228164
/gene="smpB"
/locus_tag="PPE_00203"
/note="Small protein B (SmpB) is a component of the
trans-translation system in prokaryotes for releasing
stalled ribosome from damaged messenger RNAs; Region:
SmpB; cd09294"
/db_xref="CDD:187755"
misc_feature order(227886..227903,227907..227912,227916..227921,
227928..227930,227979..227981,228066..228083)
/gene="smpB"
/locus_tag="PPE_00203"
/note="SmpB-tmRNA interface; other site"
/db_xref="CDD:187755"
gene 229170..229397
/locus_tag="PPE_00205"
/db_xref="GeneID:9772962"
CDS 229170..229397
/locus_tag="PPE_00205"
/note="COGMatches:COG4224; PfamMatches:PF05979"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868625.1"
/db_xref="GI:308067020"
/db_xref="GeneID:9772962"
/translation="MLAILERINQLAKKAKEVGLTEIEKKEQTDLRKEYLQIFRGSVQ
SILLNATIYDPNGDDVTPEKLKKEQAQIAKP"
misc_feature 229176..229367
/locus_tag="PPE_00205"
/note="Bacterial protein of unknown function (DUF896);
Region: DUF896; pfam05979"
/db_xref="CDD:147890"
gene 229468..229866
/locus_tag="PPE_00206"
/db_xref="GeneID:9772963"
CDS 229468..229866
/locus_tag="PPE_00206"
/note="COGMatches:COG2259; PfamMatches:PF07681"
/codon_start=1
/transl_table=11
/product="membrane protein"
/protein_id="YP_003868626.1"
/db_xref="GI:308067021"
/db_xref="GeneID:9772963"
/translation="MLASGLLLIRLVVGLLLVGHGAQKLFGWFGGYGPKGTGGWMESI
GIKPGVFMAVSAGLMELLGGALFAVGLLTPLAALLITVTMLGAIFKVHGSNGIWATAN
GYEYPLVLIAVVIGIALTGAGSYSIDALFR"
misc_feature <229525..229863
/locus_tag="PPE_00206"
/note="Predicted membrane protein [Function unknown];
Region: COG2259"
/db_xref="CDD:32440"
gene 229943..230893
/locus_tag="PPE_00207"
/db_xref="GeneID:9772964"
CDS 229943..230893
/locus_tag="PPE_00207"
/note="COGMatches:COG0346; PfamMatches:PF00903"
/codon_start=1
/transl_table=11
/product="lactoylglutathione lyase"
/protein_id="YP_003868627.1"
/db_xref="GI:308067022"
/db_xref="GeneID:9772964"
/translation="MSLQTTGIHHITAFAGNPQGNVDFYAGVLGLRLVKKTINFDAPE
VYHLYFGNDAGSPGTIITFFPAPGTPKGRIGGGQVGITSYVVPPGSLDFWQHRLQSFD
IQVTKTSRFSEQYLQFEDNEGLRLELVEREEGANSTWSYGGISADKAIKGFGGAVLFS
INPQKTMDALESILGFTKIAEDAEYARYQSVGEIGNIVDVPLAKMGLGFGGAGTVHHI
AWRAKDFEQHEEWRSAVQHYGYQPTPIIDRQYFNAIYFREAGGILFEIATDPPGFAND
EPAESLGQKLMLPEWYEPQRAQIEANLHPIEVRTLTEKHQ"
misc_feature 229961..230302
/locus_tag="PPE_00207"
/note="N-terminal domain of Sphingobium chlorophenolicum
2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and
similar proteins; Region: PcpA_N_like; cd08346"
/db_xref="CDD:211356"
misc_feature 229961..230266
/locus_tag="PPE_00207"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature order(229970..229972,229976..229978)
/locus_tag="PPE_00207"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:211356"
misc_feature 230396..230860
/locus_tag="PPE_00207"
/note="C-terminal domain of Sphingobium chlorophenolicum
2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and
similar proteins; Region: PcpA_C_like; cd08347"
/db_xref="CDD:176695"
misc_feature 230408..230740
/locus_tag="PPE_00207"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature order(230591..230593,230735..230737)
/locus_tag="PPE_00207"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:176695"
gene complement(231022..232173)
/locus_tag="PPE_00208"
/db_xref="GeneID:9772965"
CDS complement(231022..232173)
/locus_tag="PPE_00208"
/note="COGMatches:COG0463; PfamMatches:PF00535"
/codon_start=1
/transl_table=11
/product="glycosyltransferase"
/protein_id="YP_003868628.1"
/db_xref="GI:308067023"
/db_xref="GeneID:9772965"
/translation="MAIRYSVIIPTYNRVQQLLLTLASFETQTYPKQLFEVIVADDGS
TDGTKEMVEGFKASYPLIYVSHQEQRGRSAVRNLGLRRAKGLYIIFCDADFVVLPEFI
RIVSRYHRKYPKSVLSGIPHSWDDAFTHYYPDFSPEEKEQCRNILTQSNLWNADYEAA
NEITPIITPEDILHQTGALSKVVSPTRVPPNTQKQFASTDVAPWMLLVTRCVAIRHSH
LIRIGGFNERFVLYGLEDWDLGYRLHRLKIPFYCIKEVVGYHQEHPTYLRGNVLNTEN
LRIMYETYGFNDSSLNLFALIPPSEDFETYKNTLRVLRRGFRSKLTRSSALLLRRTLR
IAAKQFYDQSHTHAYKKSLHLIKKKAENRKSRVAHVLREMLVKSEKLVE"
misc_feature complement(231376..232164)
/locus_tag="PPE_00208"
/note="Glycosyltransferase like family 2; Region:
Glyco_tranf_2_3; pfam13641"
/db_xref="CDD:205818"
misc_feature complement(<231775..232158)
/locus_tag="PPE_00208"
/note="Glycosyl transferase family 2; Region:
Glycos_transf_2; pfam00535"
/db_xref="CDD:201288"
misc_feature complement(order(231892..231894,231898..231900,
232054..232056,232138..232140,232144..232146))
/locus_tag="PPE_00208"
/note="active site"
/db_xref="CDD:132997"
misc_feature complement(231394..>231663)
/locus_tag="PPE_00208"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
gene 232290..233171
/locus_tag="PPE_00209"
/db_xref="GeneID:9772966"
CDS 232290..233171
/locus_tag="PPE_00209"
/note="COGMatches:COG2188; PfamMatches:PF00392, PF07702;
PrositeMatches:PS50949; go_component: intracellular
(GO:0005622), go_process: regulation of transcription
(GO:0045449)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_003868629.1"
/db_xref="GI:308067024"
/db_xref="GeneID:9772966"
/translation="MVLLLMLRRGFCIFCCFSYPLKARSTNGNKHEMKWASYGKLYRV
IEDLKEEYYMTQFVYKQIIDDLKMKIFAGKFADMRLPDERSLSETYQVSRSSIKRALT
KMESVGIIFKKQGSGTFINPLYIRNESIFNYEGSNLGVTDNFQMHGKKPKIKVLSFEV
IPPTEELQRDLFLETHDFVYKIVRLRLFDDDPFMIETGYIPIKIVQNLNQTIIEGSIF
NYLEDSRNLAVTKSFLSIFAEPSQENDQKLLHLNENEPVGIMEGVFFLDNGTPFEFSH
MRFHYKYLKFNTFVSVH"
misc_feature 232461..232652
/locus_tag="PPE_00209"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature 232464..233156
/locus_tag="PPE_00209"
/note="Transcriptional regulators [Transcription]; Region:
PhnF; COG2188"
/db_xref="CDD:32371"
misc_feature order(232464..232466,232530..232532,232536..232541,
232563..232577,232581..232586,232593..232595,
232623..232628,232632..232643)
/locus_tag="PPE_00209"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 232731..233132
/locus_tag="PPE_00209"
/note="The UbiC transcription regulator-associated (UTRA)
domain is a conserved ligand-binding domain; Region: UTRA;
smart00866"
/db_xref="CDD:197934"
gene 233465..235849
/locus_tag="PPE_00210"
/db_xref="GeneID:9772967"
CDS 233465..235849
/locus_tag="PPE_00210"
/EC_number="4.1.2.9"
/note="COGMatches:COG3957; PfamMatches:PF03894;
PrositeMatches:PS60002, PS60003; go_fucntion: lyase
activity (GO:0016829)"
/codon_start=1
/transl_table=11
/product="xylulose-5-phosphate phosphoketolase"
/protein_id="YP_003868630.1"
/db_xref="GI:308067025"
/db_xref="GeneID:9772967"
/translation="MSLSPVLADYSSKTYLEKLDAYWRATNYISVGQLYLKDNPLLRE
PLKDSDVKVKPIGHWGTIPGQNFIYAHLNRVINKYDLSMLYIEGPGHGGQVMVSNSYL
DGSYTEIYPQITQDILGMKKLFKQFSFPGGIASHAAPETPGSIHEGGELGYSLSHGVG
AILDNPDLISAVVIGDGEAETGPLAASWFSNRFINPITDGAVLPILHLNGFKISNPTI
MSRQSKEELTSYFKGLGWEPFFVEGENPDHMHPEMAKVLDTAIEKIEAIQKNARENND
LTRPAWPMIVFRSPKGWTGPKEWDNVPNENSFRAHQVPIPVDQKNMQHAPALLEWLNS
YRPEELFDENGRLNSELAEILPTGDKRMGMNPVANAGNLIKDLKLPDFRNYALDNSVP
GKVIAQDMSVLGKYVKDVVLLNEENRNFRIFGPDETMSNRLAPVFEVTKRQWMDQIIE
PNDEFLSSYGRVIDSQLSEHQAEGLLEGYVLTGRHGFFASYEAFLRVVDSMITQHFKW
LRKATDQGWRADIPSLNVVATSTVFQQDHNGYTHQDPGLLGHLADKKPEFIREYLPAD
ANSLLAVFDTILNDRQKINLIVSSKHPRPQWFTANEAKELVDKGLKIIDWASTDQDGE
PDLVIASAGTEPTIESLAAISILHEKLPDLKIRYINVVDLLKLRSQKLDPRGLADAEF
DHFFTKDKPVVFAFHGYEGLIKDLFFDRHNHNLHVHGYRENGDITTPFDMRVLNQMDR
FDLVKEAVLNLPDAGKYTNIVDEMDATIKKHHQFIREEGIDLPEVENWVWKGLK"
misc_feature 233486..235846
/locus_tag="PPE_00210"
/note="putative phosphoketolase; Provisional; Region:
PRK05261"
/db_xref="CDD:179981"
misc_feature 233726..234406
/locus_tag="PPE_00210"
/note="Thiamine pyrophosphate (TPP) family,
Phosphoketolase (PK) subfamily, TPP-binding module; PK
catalyzes the conversion of D-xylulose 5-phosphate and
phosphate to acetyl phosphate,
D-glyceraldehyde-3-phosphate and H2O. This enzyme requires
divalent...; Region: TPP_PK; cd02011"
/db_xref="CDD:48174"
misc_feature order(233915..233917,233987..233998,234089..234091,
234095..234097)
/locus_tag="PPE_00210"
/note="TPP-binding site; other site"
/db_xref="CDD:48174"
misc_feature 234662..235204
/locus_tag="PPE_00210"
/note="D-xylulose 5-phosphate/D-fructose 6-phosphate
phosphoketolase; Region: XFP; pfam03894"
/db_xref="CDD:190785"
misc_feature 235235..235837
/locus_tag="PPE_00210"
/note="XFP C-terminal domain; Region: XFP_C; pfam09363"
/db_xref="CDD:192266"
gene 236066..236533
/locus_tag="PPE_00211"
/db_xref="GeneID:9772968"
CDS 236066..236533
/locus_tag="PPE_00211"
/EC_number="1.1.1.-"
/note="related to diketogulonate reductase;
COGMatches:COG0656; PrositeMatches:PS00062"
/codon_start=1
/transl_table=11
/product="Aldo/keto reductase"
/protein_id="YP_003868631.1"
/db_xref="GI:308067026"
/db_xref="GeneID:9772968"
/translation="MIEAKKRDYIRSIGVCNFLPEHNERLIRETGVTPSLNQVELHPL
FNQEHQRAKDAEQGIVTESWSPLGRGHSMLENEEIGKIAAAHGKTTTQAILRWHIQLG
AIPIPKASSLKHQTENLDIFDFELSPEEMNMISAFSSEDGRIWGQDPKSYEEL"
misc_feature <236066..236473
/locus_tag="PPE_00211"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature order(236111..236116,236177..236179,236255..236272,
236336..236338,236381..236392,236405..236407,
236414..236419)
/locus_tag="PPE_00211"
/note="active site"
/db_xref="CDD:119408"
gene 236718..237338
/locus_tag="PPE_00212"
/db_xref="GeneID:9772969"
CDS 236718..237338
/locus_tag="PPE_00212"
/note="COGMatches:COG1842; PfamMatches:PF04012"
/codon_start=1
/transl_table=11
/product="Phage shock protein A-like protein"
/protein_id="YP_003868632.1"
/db_xref="GI:308067027"
/db_xref="GeneID:9772969"
/translation="MGILSRFRDIMKVNVNALMDKVGDPEKTIDDYMRNLNSDLDKVK
AETVSVLADERRAKRALDECKAEIKKLQHYASKSVEAGNEEEARKFLERKGLQAEKLE
QLQTSYDVVSTNAVNIKKMQEKLVSDMGQLEARHAELKGKMAVAKAQQTLNSMGSKNS
AFEVMEEQVNRVYDEAMAIAELRAGTKDDLDALFAQYEKSTNTEDE"
misc_feature 236718..237335
/locus_tag="PPE_00212"
/note="Phage shock protein A (IM30), suppresses
sigma54-dependent transcription [Transcription / Signal
transduction mechanisms]; Region: PspA; COG1842"
/db_xref="CDD:32027"
gene 237365..238399
/locus_tag="PPE_00213"
/db_xref="GeneID:9772970"
CDS 237365..238399
/locus_tag="PPE_00213"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868633.1"
/db_xref="GI:308067028"
/db_xref="GeneID:9772970"
/translation="MPVIEYKCPNCGSGMVFDSETGRLSCHSCGREDNIESIPDPLIN
LIFSEDEAHEYHCNNCGAVIMTEVETSATVCSFCGSAVVLGDRLTGKLAPAQIIPFSI
SKEEAIAAFKKWCKNGRLTPNRFMTADRIKGITGMYVPFWLYELHNKIEVQGEGTQVR
TYTSGDYEYTETKHFDVYRKIRLNYVKVPIDAAEKMNDELMDKLEPFPYDQLKPFKTP
YLAGYIAEKYSYNEEELFPRVKEKVKEYIDAYIHSTVSEYTAVSYTEKQIDTTLKQAD
YVLLPVWVIHYDYNQLEHTFAMNGQTGKVVGKPPISKFKVTAWFAGIFGITLFSLRLI
TWLMMGGEFY"
misc_feature 237380..237469
/locus_tag="PPE_00213"
/note="TFIIB zinc-binding; Region: TF_Zn_Ribbon;
pfam08271"
/db_xref="CDD:203895"
gene 238396..239190
/locus_tag="PPE_00214"
/db_xref="GeneID:9772971"
CDS 238396..239190
/locus_tag="PPE_00214"
/note="PfamMatches:PF04536; PrositeMatches:PS00018"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868634.1"
/db_xref="GI:308067029"
/db_xref="GeneID:9772971"
/translation="MKRHRAIVAVLLFFAVFLALPMEMKGEPATTEMKPLIYDEAGLL
NQEEYDVLNAMANQYGAERETDIIIYTTLNPDNMDVMKMTQDFYDDHGPGYDRSHGNA
VILTMDMRNREVYLAGFYKAERYLDDDRLTKIRHEISPDLTNGNYGLAFQKYILSAHK
YLAIRPGVNPDSIFFKGWLHLAVALGLAAMIVGKMVSNSGGRVTVNRQTYEDANASGV
LEHRDLYLHTTTTKRKIEKSSSSSSSGGGGGTTSGGHSHSGSRGSF"
misc_feature 238522..238881
/locus_tag="PPE_00214"
/note="Repair protein; Region: Repair_PSII; pfam04536"
/db_xref="CDD:203039"
gene 239235..240227
/locus_tag="PPE_00215"
/db_xref="GeneID:9772972"
CDS 239235..240227
/locus_tag="PPE_00215"
/note="COGMatches:COG4260"
/codon_start=1
/transl_table=11
/product="virion core protein (lumpy skin disease virus)"
/protein_id="YP_003868635.1"
/db_xref="GI:308067030"
/db_xref="GeneID:9772972"
/translation="MGFFRNQFANVVEWEEFRDDMIFWKWSNREIKKGSKLIIRSGQD
AIFVNNGKIEGIFENEGSYNMDSDIIPFLSTLRGFKFGFNSGMRVEVLFVNTKEFTVK
WGTQNPVLIPTPQLPGGMPIRANGTLNFKVNDYVTLIDKIAGVKDSYLVEDVKIRITS
VLDQLLMKWISREGKDMFNLQANASDISKGIQEDLDMQVMDNGMTITGFHVMSFNYPQ
DIQDMITKTASHEMIGNLQKYQQVTMTDGIASGNVKGGGAASDMASMMMGMNIANEMM
KNLNPNPKPSAETQPTPAAPAPSGDGIKPNFCPNCGTKNEGANFCPNCGQKLNG"
misc_feature 239235..240221
/locus_tag="PPE_00215"
/note="Membrane protease subunit, stomatin/prohibitin
family [Amino acid transport and metabolism]; Region:
COG4260"
/db_xref="CDD:33983"
misc_feature 239295..239918
/locus_tag="PPE_00215"
/note="A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing proteins
are lipid raft-associated. Individual...; Region:
Band_7_5; cd03408"
/db_xref="CDD:48220"
misc_feature 240147..240218
/locus_tag="PPE_00215"
/note="zinc-ribbon domain; Region: zf-ribbon_3; pfam13248"
/db_xref="CDD:205428"
gene 240484..244233
/locus_tag="PPE_00216"
/db_xref="GeneID:9772973"
CDS 240484..244233
/locus_tag="PPE_00216"
/note="COGMatches:COG3534; PfamMatches:PF02018, PF06964;
go_process: L-arabinose metabolism (GO:0046373)"
/codon_start=1
/transl_table=11
/product="alpha-L-arabinofuranosidase"
/protein_id="YP_003868636.1"
/db_xref="GI:308067031"
/db_xref="GeneID:9772973"
/translation="MTKFQDQIIARYKFDDAENVGKDSSGQGNDGVASGTVTPTISHA
TGRAALTLEGGPNGTSYIQLPSDLFKDVSDNTGVTVTAWVNFGRFTDMWERVFDFGKA
HTGPYMFMTRNLRATLFTEVDLSVDPGRGFVRDEWMHIALSVIGTEGGTLSSAGPVVY
VNGEVVADGSISQTSSGNYAKLRKWFETFTDSSNYSNNFIGRSQHVADVDFAGFVSDF
RIYKAGLSADEVIEVMCDSLTDEEVVKLARDKYLSFPTTIVTKDITLPTVLMGGRVEV
TWKSSQPSILSDNGQVQTITSAQGVTVTALLTKGLSQIEESFDVSVLPEQLPPYTLTI
HGNKEVLDVSEVMYGLFYEDINNAADGGIYAELVQNRSFESFEFDTYSHASGECGCST
GRNRNPLFAWSGDTDKMTPQLSGGLNEFLGAKDKEVNSYYVRVADGATIRNKGFSDSN
QNCAMSIQEGAKYEFTIWAKADSAGTITLQLQDSNEKAISDSVTIQVEGGNTWKKYGI
DSKLVLTGSATVLGQLALTFEGDISVDMVSLFPQDVWGAGEEEQSPSAHANFQGNPNY
RLRKDLVNALVGMHPKFLRFPGGCISEGSFIWENVYDWKESIGDIELRKENFNVWGYM
MTMGLGYMEYFQLAEDLNAAPLPVMACGVLCQARSDYAHPAGGALREYYIKNFTDLID
FAISVDFEHNEWAAMRKKMGHAAPFDLRYLGVGNENWGTEFFANFEVFKTSIDEYMEK
NYPGYELHIISTVGAQADDDAYQQGWKFLSGNMTGSAKVAFADGNQVTEETVTWYEKQ
KDYMDTIADEHYYRSNEYLLNNVDRYNYYYRAYNADGSINWKATSKVFVGEYASTDKN
TLAGAVAEAAVMTGFENNADVVRLAAYAPLFNKVLTDGTYRWTPDCIWFDDETVWFTP
NYYVQQMYAKYLGNKVLSTSFSTYKNGKPTDLIPQGGIEIATGNAEVMIKRVTVTSNQ
DGSVLLDQDFTQELNSAWQVIPGSVGSTVEKGKGLVLKAQDSGLNGLYILNNSWSNYK
VEVVVSRITGTDGFYVGAGLTDISAEKKDVVEYAIGYGGKATGVKVYKQGIEGYTLGD
YSSSTAAGNLRAASYEELADNTDYTITVNYGGETGSNLICSYTDGETTSKVLDYKLEA
YNRDVFNSVTQDAEHVYVKLVNADNVDKATQLNLQDLNVESIAKLITLTGDSSLVHVP
NVNKKNDEKVVPTEQQITLHSDSVLLDLPANSVNVLVLDLKPFSA"
misc_feature 240652..241173
/locus_tag="PPE_00216"
/note="Concanavalin A-like lectin/glucanases superfamily;
Region: Laminin_G_3; pfam13385"
/db_xref="CDD:205563"
misc_feature 242185..243321
/locus_tag="PPE_00216"
/note="Alpha-L-arabinofuranosidase [Carbohydrate transport
and metabolism]; Region: AbfA; COG3534"
/db_xref="CDD:33336"
misc_feature 243043..>243330
/locus_tag="PPE_00216"
/note="Alpha-L-arabinofuranosidase C-terminus; Region:
Alpha-L-AF_C; pfam06964"
/db_xref="CDD:203553"
misc_feature <243931..244191
/locus_tag="PPE_00216"
/note="Alpha-L-arabinofuranosidase C-terminus; Region:
Alpha-L-AF_C; cl01412"
/db_xref="CDD:207405"
gene complement(244323..245720)
/locus_tag="PPE_00217"
/db_xref="GeneID:9772974"
CDS complement(244323..245720)
/locus_tag="PPE_00217"
/EC_number="3.1.3.8"
/note="COGMatches:COG4247; PfamMatches:PF02333"
/codon_start=1
/transl_table=11
/product="3-phytase"
/protein_id="YP_003868637.1"
/db_xref="GI:308067032"
/db_xref="GeneID:9772974"
/translation="MKSTKLALLAMLTGVLVSPELTHAADIQPSGYASLRTQADKMGA
TITWDSDDQSVLVKLKNGIVGTFTVGEKEYRLAGLSGKADREIKMMNGNVYLPTKLLT
ALEAENSKYADPKDTVPTYKVIPSAETEAVEDGEDAADDPAIWLNPVDPEKSRILATN
KGGGILVYDLEGKQLQNMKVGKMNNVDLRYGFTLGGKKMDIAGATNRTNNTIDIFAID
GASGKLTNVVGKPIKASMKEVYGFSLYHSLKTDKFYALVLGKEGEFEQYELTDDGSGK
IAGKLVRQFKLNTQSEGMVADDEYGTIYIAEEDYAIWKYSAEPDGSSEPLRRVDIADG
RRLHDDIEGLTLYYGKDGKGYLMASSQGNSSYAIYERQGDNAYISNFTISASPTVDGT
SVTDGIDVLGYGLGKNFPHGIFVAQDDENLQNGKKLNQNFKMVPWERIATGAPTPLTI
DDGINPRELVNRSTQ"
misc_feature complement(<245430..245627)
/locus_tag="PPE_00217"
/note="Copper amine oxidase N-terminal domain; Region:
Cu_amine_oxidN1; pfam07833"
/db_xref="CDD:203776"
misc_feature complement(244332..245297)
/locus_tag="PPE_00217"
/note="Phytase; Region: Phytase; pfam02333"
/db_xref="CDD:190281"
gene complement(245831..246706)
/locus_tag="PPE_00218"
/db_xref="GeneID:9772975"
CDS complement(245831..246706)
/locus_tag="PPE_00218"
/note="COGMatches:COG2207; PfamMatches:PF00165;
PrositeMatches:PS00041, PS01124; go_component:
intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_003868638.1"
/db_xref="GI:308067033"
/db_xref="GeneID:9772975"
/translation="MSKTDFLSFLVPPLPYFIEGNFTTYQKGDWHPNRYNLGYFDVII
IKEGLLHIGEEEEVWKVTENYALILEPDKHHFPIEACTEQTSFYWFHFQTNSMWCAQS
SHNSIIPSTPIPELHFHSEHTTIHLPKIQKVVNPHELFSKLDYLLASTLKPRKLALWE
AQQTFVNVFQSLEYDQNNKDSSSKLAEQIEIYLKQNYKNTITNKDLEAHFHVHQNYLA
RCMKVAFQRTPLEYLMDYRLDQGRSLLLQTDWSVQQITEETGFSQASYFSKCFKEKFG
MSPKNYRQQYWKPVH"
misc_feature complement(245858..246106)
/locus_tag="PPE_00218"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(245855..245971)
/locus_tag="PPE_00218"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 246900..248843
/locus_tag="PPE_00219"
/db_xref="GeneID:9772976"
CDS 246900..248843
/locus_tag="PPE_00219"
/note="COGMatches:COG3533; PfamMatches:PF07944"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868639.1"
/db_xref="GI:308067034"
/db_xref="GeneID:9772976"
/translation="MKTAKPVKHVIVDDLFWKKYKQVVAEEVIPYQWKALNDELPDTE
PSHAIENFRIAAGESSGEYYGTVFQDSDLAKWLETVAFSLRDHPNPALEERADEVIEL
LGRAQAEDGYLNTYYLLKEPNNRWTNLRDNHELYCAGHFIEAAVAYYETTGKTKFLHI
MEKYVELIQQIFGTEEGKRKGYPGHEEIELALIKLYDVTAKDQYLKLAQYFIEQRGQH
PIYFAEEQEKRKHIQTEPTWNDDNNINFGLGFEYQQAHQPVREQKEAVGHAVRAVYLY
IAMADLAAKTGDASLLQACETLWDDVTNHKMYITAGIGSTVNAEAFTCHHDLPNDSMY
CETCASVGLAFWANRMLRLAPDRKYADVLERALYNGTISGMDLGGKRFFYVNPLEVNP
FQKSRKDQEHVKTERQKWFFCACCPPNLARMIASVEDNMYTQTDDTLYTHLYIASKVN
MTLSGQEVEITQTHHYPWDADLTFSIHVTEPTPFKWALRIPGWCKQAEVKVNGETISL
DRLEKGYIEIQRTWKDGDVVTLHLAMPVERIRSNPQVSMNQQQIALQRGPVVFCLEEV
DNGANLAGLRLTKDSLITEEFSESLLGGVVKLTIEGYRLKNSNALYSSEPPEFVPQQI
TAIPYYAWCNRAKGEMRVWVYES"
misc_feature 246900..248831
/locus_tag="PPE_00219"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3533"
/db_xref="CDD:33335"
misc_feature 246924..248585
/locus_tag="PPE_00219"
/note="Putative glycosyl hydrolase of unknown function
(DUF1680); Region: DUF1680; pfam07944"
/db_xref="CDD:116554"
gene 248871..250241
/locus_tag="PPE_00220"
/db_xref="GeneID:9772977"
CDS 248871..250241
/locus_tag="PPE_00220"
/note="COGMatches:COG2211; PfamMatches:PF07690"
/codon_start=1
/transl_table=11
/product="xylose-proton symporter (xylose transporter)"
/protein_id="YP_003868640.1"
/db_xref="GI:308067035"
/db_xref="GeneID:9772977"
/translation="MSTRIVSTEPPEKAASTVPFHRKISYSLTDTAGNLLYCVISSYL
LYFYTDVFGLSIGIAGTLLFITRFIDAIDAPIWGILIDRTKSKYGQSRPYFLWLAIPF
AVFMVLTFTTPNWSESGKIAYAAITYIIAGILYTGISTPITSILPNLSTNSNERVVLN
SFRMVGGNVGFFIATTFTLPLVAFFGQGNDQKGFSLTLVLFGITAIIMFFIAFADLRE
NAAVKTKSVPIAKSFTAIKRNWPWMLVVAANLCYWIGLNIRSATLIFYLQYNLDSKDL
VPLINGLTSLQLISMVLIPFFARKLSKNAIMIIGLILAALGQVVILMGSTDLTLIIIG
WIIGALGSGFACSMPFAMLSDTVDYGEWKNGIRASGFLTSIGSAFCIKAGSGIGGLLP
AWIMGSTGYIAGKVQTPTALSGIQFSFIWLPFIVFLLGIIPMFFYKKFEKNEASIQQD
LIARRS"
misc_feature 248937..250232
/locus_tag="PPE_00220"
/note="sugar (Glycoside-Pentoside-Hexuronide) transporter;
Region: gph; TIGR00792"
/db_xref="CDD:188083"
misc_feature 248937..250196
/locus_tag="PPE_00220"
/note="melibiose:sodium symporter; Provisional; Region:
PRK10429; cl15392"
/db_xref="CDD:199528"
gene 250517..251908
/locus_tag="PPE_00221"
/db_xref="GeneID:9772978"
CDS 250517..251908
/locus_tag="PPE_00221"
/note="COGMatches:COG0534; PfamMatches:PF01554;
go_component: membrane (GO:0016020)"
/codon_start=1
/transl_table=11
/product="Na+-driven multidrug efflux pump"
/protein_id="YP_003868641.1"
/db_xref="GI:308067036"
/db_xref="GeneID:9772978"
/translation="MSQLSVRMRTHGFLNKHFSGESIDYRQIIALFIPLLIDQAFIVG
LNLVNTAMISSSGMAAVSAVNMIDSLNIFLINVFVAVSTGGTVVVAQYKGSGNDLMVS
KAASGTISSVSLLALCISLFMIVLYNPILSVLFGSASPDVLANGKVYLLGSCMSFVGI
AIVEAVCGALRGIGKTRASLALSLIMNLSYVLLNVVFINVLDMGVLGMTIAVNVSRYA
GAVCALIYLVRVDDDLRVQLRDMLYFNLAMLKKILFIGLPFAAEQMFFNGGKILTQIF
IVSLGTSALATNAICSSLANVFQIPANALALTIVTVVGQCMGRRNVEDARKFTKSFIW
LSSCSFIVMGLILMPLFEPMVGLFHPPAEIVDDILVVILINTLAQIPLWSIAFITPSA
LRAAGDSKFTSLTSMLSMWLCRVVLGYILGIVFNLGIVGVWLAMDIEWGVRGIVFLWR
FRGNKWVQHRLID"
misc_feature 250589..251890
/locus_tag="PPE_00221"
/note="MATE family multidrug exporter; Provisional;
Region: PRK10189"
/db_xref="CDD:182293"
misc_feature 250616..251104
/locus_tag="PPE_00221"
/note="MatE; Region: MatE; pfam01554"
/db_xref="CDD:190033"
misc_feature 251288..251776
/locus_tag="PPE_00221"
/note="MatE; Region: MatE; pfam01554"
/db_xref="CDD:190033"
gene complement(251996..252493)
/locus_tag="PPE_00222"
/db_xref="GeneID:9772979"
CDS complement(251996..252493)
/locus_tag="PPE_00222"
/note="COGMatches:COG0604; PfamMatches:PF00107"
/codon_start=1
/transl_table=11
/product="NADPH:quinone reductase"
/protein_id="YP_003868642.1"
/db_xref="GI:308067037"
/db_xref="GeneID:9772979"
/translation="MDIRIVATYAMLMALAAGARVTVTSRSEAKSQAALAHGAHHAFD
SHSEWKESMNGDTVDLVLDSIGPATFDKYFDILKPNGRIVTFGASSGDRVEIPLRSIF
FPQISIIGTSMGSGEEFAAMLQFMERHALHPIIDSVFPLQDTTQAFHRMQQGAQLGNI
GISIG"
misc_feature complement(252002..>252478)
/locus_tag="PPE_00222"
/note="Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family;
Region: MDR; cl16912"
/db_xref="CDD:211475"
misc_feature complement(252002..>252478)
/locus_tag="PPE_00222"
/note="NADPH:quinone reductase and related Zn-dependent
oxidoreductases [Energy production and conversion /
General function prediction only]; Region: Qor; COG0604"
/db_xref="CDD:30949"
misc_feature complement(order(252155..252163,252233..252238,
252299..252304,252404..252406,252416..252421,
252473..252478))
/locus_tag="PPE_00222"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:176178"
gene 252503..253006
/locus_tag="PPE_00223"
/db_xref="GeneID:9772980"
CDS 252503..253006
/locus_tag="PPE_00223"
/note="COGMatches:COG0583; PfamMatches:PF03466"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_003868643.1"
/db_xref="GI:308067038"
/db_xref="GeneID:9772980"
/translation="MTGSTHDLVQKVLNYELDGAFVYGPVDDPHIEYVAAFEEELVLI
SEPGERDMGELLTKPMLFFDVGCTHRTRAESFLSEAGVEAYQVMEFGNLEVILGGVAS
GLGVSMLPQSSIAKAEEAGSIASHRLPEKYRKLEVWFVHRRDSVYSSALSGLLHWMKK
DAILNRN"
misc_feature 252503..252967
/locus_tag="PPE_00223"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cl11398"
/db_xref="CDD:209302"
misc_feature order(252503..252508,252761..252778,252794..252799,
252803..252808)
/locus_tag="PPE_00223"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
misc_feature <252506..252979
/locus_tag="PPE_00223"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
gene 253029..254132
/locus_tag="PPE_00224"
/db_xref="GeneID:9772981"
CDS 253029..254132
/locus_tag="PPE_00224"
/note="COGMatches:COG1714; PfamMatches:PF06271"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868644.1"
/db_xref="GI:308067039"
/db_xref="GeneID:9772981"
/translation="MEEHRVTNNPSTVAPGSYATNGGYHRREPDRMAVLSETYGASIF
FRRWAAWMIDFILIVFGYGGLVYFTAKKVSEAETPNMGMVVILFLIGSFCYYLLLEGI
PGYTLGKFVLRIQVVNGEGKPPGIVKSLIRTLIQLVDTNPLFFLGLPAGLCVLVTPRK
QRIGDMAANTYVVKVRDLGKAGRKKTGIFAGAIILMTIISIVFAVSLITTLITQIVKP
EVFTSKDSQFAVTAPWNWSRDDTINEDADISIKNELTERYVIVLSEPKSDFDSSMTLQ
EYKGIIEDHLVSGITAPELGIASDLVVNGYPAIEFTLKGEVDVTPIMYNVTTIETPSH
YHQVLAWTYASRYSRAQQELRKIRDSFREMNML"
misc_feature 253158..253535
/locus_tag="PPE_00224"
/note="RDD family; Region: RDD; pfam06271"
/db_xref="CDD:203419"
gene complement(254293..256551)
/locus_tag="PPE_00225"
/db_xref="GeneID:9772982"
CDS complement(254293..256551)
/locus_tag="PPE_00225"
/note="COGMatches:COG3533; PfamMatches:PF07944"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868645.1"
/db_xref="GI:308067040"
/db_xref="GeneID:9772982"
/translation="MKAKAFDLHKVRIDSGPLLHAMELNTAYLLSLEPDRLLSRFREY
AGLEPKAAHYEGWEARGISGHTLGHYLSGCALMFASTGDERLLERVNYVVDELEICQN
SHGNGYISGIPRGKEIFEEVKAGDIRSQGFDLNGGWVPLYTMHKLFAGLRDAHLPAHH
PKALSIEIKLGNWLEDVLQGLDDDQVQQVLHCEFGGMNEVLTDLAEHSGEERFLSLAE
RFYHGEVLNDLADSQDTLAGRHANTQIPKIIGAARQFEMTGKPQYADLSRFFWDRVVH
KHSYVIGGNSYNEHFGEPGKLNDRLGEGTCETCNTYNMLKLTRHMFEWDAYAAYADYY
ERAMFNHILASQQPVDGRVCYFVSLEMGGHKSFNSQYEDFTCCVGSGMESHSMYGTAI
YFHTPETIYVNQYVPSTVTWDEMGVQLKQDTLFPQNGRGTLRVISKEPKSFAIKLRCP
HWAEQGMMIKINGEKYVTEACPTSYVVMEREWSNGDTIEYDIPMTVRVEEMPDNPRRV
AFMYGPLVLAGDLGPVEQESNEEHLLASVLIGSADSLTTKLIADGNEPNTFHMTDLGY
IGDLQLRPFYQMYDRSYTVYWDLFSKDEWTATEAEYRTALAYQLELERLTVDVVQPAE
MQPERDHAFTGEHVGLGSIYNRKYRDTWPGGWFSFVMKVLPDEPVQLAVTYLKDLSRP
HGDFDITADGQILGEGKLESEEMNKFETFAYELPLSVTNDKNEVTIQFTAHPQGKVAK
VAGLRVIRHSIV"
misc_feature complement(254977..256530)
/locus_tag="PPE_00225"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3533"
/db_xref="CDD:33335"
misc_feature complement(254998..256521)
/locus_tag="PPE_00225"
/note="Putative glycosyl hydrolase of unknown function
(DUF1680); Region: DUF1680; pfam07944"
/db_xref="CDD:116554"
gene 256682..257575
/locus_tag="PPE_00226"
/db_xref="GeneID:9772983"
CDS 256682..257575
/locus_tag="PPE_00226"
/note="COGMatches:COG2207; PfamMatches:PF00165;
PrositeMatches:PS01124, PS00300; go_component:
intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_003868646.1"
/db_xref="GI:308067041"
/db_xref="GeneID:9772983"
/translation="MTYLKVNVDAPIRLISAGEFVNEVPWKHMSRSIENFELILGVQE
TVYIREEREDFEVGEGDILLLYPGRTHKGYRESLPGVKFYWFHFDVSTTPNVLSNEEM
KQETSVMNGLLQRHGKMRDIYLPQCVQADNGDRIHIIVNQILHVANSHYLTYHSANYL
FTSLLIEISELALSRLLSNPVHSQGNVSFNKIIEWTRIHAEEPLTVTDLARKFNYNKD
YISRLFKQNTGMRPLEFIHSIRINKAKELISRTDMSIKQVAEEAGYPDEKYFMRLFKK
RAHMTPSQYRNAYHKTFMNNV"
misc_feature 256781..>256948
/locus_tag="PPE_00226"
/note="Cupin domain; Region: Cupin_2; cl09118"
/db_xref="CDD:212615"
misc_feature 257270..257392
/locus_tag="PPE_00226"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature 257288..257539
/locus_tag="PPE_00226"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature 257432..257542
/locus_tag="PPE_00226"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene complement(258184..258588)
/locus_tag="PPE_00227"
/db_xref="GeneID:9772984"
CDS complement(258184..258588)
/locus_tag="PPE_00227"
/note="COGMatches:COG3654; PfamMatches:PF05012"
/codon_start=1
/transl_table=11
/product="Prophage maintenance system killer protein"
/protein_id="YP_003868647.1"
/db_xref="GI:308067042"
/db_xref="GeneID:9772984"
/translation="MSSIRFLTIQEVIAINVAMIERYSKGEQIGVKDTSLLESAVLRP
QSSAFSEDAYPTIFSKAAALFESLGQNHPFHNANKRTAFTALLIFLRYNGFQFKMDQK
AAEDFTVDMVNHKYSLDQLALLIELHASKLHV"
misc_feature complement(258253..258579)
/locus_tag="PPE_00227"
/note="Prophage maintenance system killer protein [General
function prediction only]; Region: Doc; COG3654"
/db_xref="CDD:33452"
gene complement(258585..258848)
/locus_tag="PPE_00228"
/db_xref="GeneID:9772985"
CDS complement(258585..258848)
/locus_tag="PPE_00228"
/note="PfamMatches:PF04014"
/codon_start=1
/transl_table=11
/product="SpoVT/AbrB-like cell growth regulatory protein"
/protein_id="YP_003868648.1"
/db_xref="GI:308067043"
/db_xref="GeneID:9772985"
/translation="MGKVIGMERKITKFGNSLGITMTEAIKQLGLGQGDTVQVEVDHK
SGQIIIQKSNKITLPSGLSDDFLENLSQVMDSYDETLKGLKDR"
misc_feature complement(258591..258824)
/locus_tag="PPE_00228"
/note="Antidote-toxin recognition MazE; Region:
Antitoxin-MazE; cl00877"
/db_xref="CDD:212245"
gene 259044..259982
/locus_tag="PPE_00229"
/db_xref="GeneID:9772986"
CDS 259044..259982
/locus_tag="PPE_00229"
/note="COGMatches:COG3878"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868649.1"
/db_xref="GI:308067044"
/db_xref="GeneID:9772986"
/translation="MLQPPLKDELTRILEGYSLDEDLKEEIHQEAQAAIQFHVEHEEN
YEHLGNSRIAGYPDLPPTIEWPCNSDGEYYTFIAQINLSELPFSPFEGLPHQGILYFF
LGLDEPAYDIDHKIFYYNGDSSALKKTMPPTGKVEVCAENRGFASYAISFQPIVTLRS
EGELGDVLVDQYEELYELVCEQSDTVWGQHQSFAGNTLRDAYLRRNGLEGLLFNWHKS
ESQIHKEIEQAMHRGSTDYAEHLRSEVLPQLQEYQTNREKHDQASENWHVLLSVSSLD
EVGMCWWDAGYLEFLIDQRDLKNLDFSNTYVNLATS"
misc_feature 259194..259970
/locus_tag="PPE_00229"
/note="Domain of unknown function (DUF1963); Region:
DUF1963; cl01600"
/db_xref="CDD:154496"
gene complement(260054..260917)
/locus_tag="PPE_00230"
/db_xref="GeneID:9772987"
CDS complement(260054..260917)
/locus_tag="PPE_00230"
/note="COGMatches:COG0583; PfamMatches:PF00126, PF03466;
PrositeMatches:PS50931; go_process: regulation of
transcription, DNA-dependent (GO:0006355)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator gltR"
/protein_id="YP_003868650.1"
/db_xref="GI:308067045"
/db_xref="GeneID:9772987"
/translation="MDIRSLEVFKAVAIEQSITKAAEKLNYVQSNVTARIQRLEQELG
VPLLYRYHKKVSLTPAGRELLPHVNKLLYDFEEAIEAVKLSSAPRGTLRIGAMESTAS
TRLPLIFTQYHKKFPQVELSLYMAPTVDQVSTILKYKVDGAFVDGPILHPEIVEYPVF
EESLVLITSYSPEPFQLELVLHEPLLSSFAHCIYLGRWQRWLEDNGYAPMKVMEYGTL
EGVLKCVENGLGVTVLPISMVESRMQGRLNCHPLPEPYRTVPTVFIRRRDSYMTSALS
RFMELVGITNL"
misc_feature complement(260072..260917)
/locus_tag="PPE_00230"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(260732..260911)
/locus_tag="PPE_00230"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(260075..260647)
/locus_tag="PPE_00230"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulators, YofA and SoxR,
contains the type 2 periplasmic binding fold; Region:
PBP2_YofA_SoxR_like; cd08442"
/db_xref="CDD:176133"
misc_feature complement(order(260237..260242,260246..260251,
260267..260284,260543..260563,260567..260569,
260579..260581,260588..260593,260597..260602))
/locus_tag="PPE_00230"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176133"
gene 261078..261440
/locus_tag="PPE_00231"
/db_xref="GeneID:9772988"
CDS 261078..261440
/locus_tag="PPE_00231"
/note="COGMatches:COG0662; PfamMatches:PF07883"
/codon_start=1
/transl_table=11
/product="mannose-6-phosphate isomerase"
/protein_id="YP_003868651.1"
/db_xref="GI:308067046"
/db_xref="GeneID:9772988"
/translation="MISKVNVQDKFLQIIDYWNPRIGGELNDSYVKMAKIKGEFIWHH
HDHEDEMFFVWKGRLLIRLRDGEIAVNEGEFVIIPKGVEHQPIAEEEVHLLLIEPKTT
LNTGNVVNERTVSIPQRI"
misc_feature 261078..261416
/locus_tag="PPE_00231"
/note="Mannose-6-phosphate isomerase [Carbohydrate
transport and metabolism]; Region: {ManC}; COG0662"
/db_xref="CDD:31006"
gene 261965..262252
/locus_tag="PPE_00232"
/db_xref="GeneID:9772989"
CDS 261965..262252
/locus_tag="PPE_00232"
/note="COGMatches:COG0662; PfamMatches:PF07883"
/codon_start=1
/transl_table=11
/product="mannose-6-phosphate isomerase"
/protein_id="YP_003868652.1"
/db_xref="GI:308067047"
/db_xref="GeneID:9772989"
/translation="MNDYQFKLVKIDGDFVWHDHQDTDEVFIVLEGEMFIDFRDGQVK
ISQGEMFIVPRDVEHKTFANQECHIMLVEPRGVVNTGETESELTAVNDIWI"
misc_feature <261965..262231
/locus_tag="PPE_00232"
/note="Mannose-6-phosphate isomerase [Carbohydrate
transport and metabolism]; Region: {ManC}; COG0662"
/db_xref="CDD:31006"
gene complement(262870..265914)
/locus_tag="PPE_00233"
/db_xref="GeneID:9772990"
CDS complement(262870..265914)
/locus_tag="PPE_00233"
/EC_number="3.2.1.23"
/note="COGMatches:COG3250; PfamMatches:PF02837, PF00703,
PF02836, PF02929; PrositeMatches:PS00719, PS00608;
go_process: carbohydrate metabolism (GO:0005975),
go_component: beta-galactosidase complex (GO:0009341)"
/codon_start=1
/transl_table=11
/product="beta-galactosidase (lactase)"
/protein_id="YP_003868653.1"
/db_xref="GI:308067048"
/db_xref="GeneID:9772990"
/translation="MTIQPPSLDWLTDVTKFAVHRLPAYSDHKYYATLQEAEQQADMA
WRHSLNGSWKFNYATNPASRPVEFYAPGFEYGGWSDIQVPGHIQTQGFGQMQYVNTMY
PWDGHSDVRPPHIPEDHNPVGSYIKSFVLPENMASDAQPVFISFQGVESAFYVWLNGQ
FVGYSEDSFTPSDFELTPFLQAGENKLAVEVYQRSTGAWLEDQDFWRFSGIFRDVYLY
TIPTVHVRDLHAKADLDASYTQGLLELKLTLEKPATAYATVDVKNAVGHVVASLKADF
TDGTASLSATLEQVQSWSAEKPYLYTLFIQIYDASGSLVEVIPQKIGFRKFELINKVM
HLNGKRIVFKGVNRHEFNARTGRAISREDMLWDIRTLKQNNMNAVRTSHYPNQTLWYE
LCDEYGVYVIDEMNLETHGSWQKLGAVEPSWNIPANLPEWQDIVMDRAISILERDKNH
ASILIWSCGNESYAGEVLRNVANYFRATDSSRLVHYEGVFHNRTYDDTSDMESRMYAK
PADIEQYLNDNPQKPYISCEYMHAMGNSVGGMHKYTELENKYELYQGGFIWDYIDQAV
MKKDRYGREYLAIGGDFDDRPTDYGFCTDGIVYADRKVSPKMQEVKFLYQNLKLSPDR
SGVTIRNENLFEGTGDYELVYSLLHEGQEIARNVSHVDVAAQTEAYIPLTFPSTDGKP
GEYVIHTALVLKEATIWADAGHEVAFGQHIFIMEDSNPLKAPTGGALRVVHGDVNIGV
HGADFSIMFSKGAGSLTSLRYAGREMIATPPAPLFWRATTDNDRGTALGFEAGGWFAA
SLTRKCVGIEVTEEQTDRVTVAFRYTLSIHADAKVTVAYTVFADGSLNVKSTYEGVPG
LPNLPIFALSFKVPADYRHLDWYAMGPDENYIDRAFGARLGVFRNEAADNVSGYVVPQ
ESGNRTGVRRVDITDDSQRGIRITAPATAPVECNISPYTAFELESAYHLYELPNVYYT
VVTIAGKQMGVGGDDSWGAPVHEEYQITADQKLEFEFTMQRV"
misc_feature complement(262882..265854)
/locus_tag="PPE_00233"
/note="cryptic beta-D-galactosidase subunit alpha;
Reviewed; Region: ebgA; PRK10340"
/db_xref="CDD:182390"
misc_feature complement(265252..265788)
/locus_tag="PPE_00233"
/note="Glycosyl hydrolases family 2, sugar binding domain;
Region: Glyco_hydro_2_N; pfam02837"
/db_xref="CDD:202424"
misc_feature complement(264940..265248)
/locus_tag="PPE_00233"
/note="Glycosyl hydrolases family 2; Region:
Glyco_hydro_2; pfam00703"
/db_xref="CDD:201405"
misc_feature complement(264055..264936)
/locus_tag="PPE_00233"
/note="Glycosyl hydrolases family 2, TIM barrel domain;
Region: Glyco_hydro_2_C; pfam02836"
/db_xref="CDD:202423"
misc_feature complement(262882..263694)
/locus_tag="PPE_00233"
/note="Beta galactosidase small chain; Region:
Bgal_small_N; smart01038"
/db_xref="CDD:198106"
gene complement(265967..266791)
/locus_tag="PPE_00234"
/db_xref="GeneID:9772991"
CDS complement(265967..266791)
/locus_tag="PPE_00234"
/note="COGMatches:COG0395; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="lactose ABC transporter permease"
/protein_id="YP_003868654.1"
/db_xref="GI:308067049"
/db_xref="GeneID:9772991"
/translation="MMKTKRAFTYAFLILVSFVSIFPFLWMLSSATNLSVDVTKGKLL
PGSHLMDNMHNLLEKVDIVTALSNSAKVSISTTLLAMLIASLAGYGFEIYRSKAKDVV
FNILLMSMMIPFAAIMIPLYRMFGSISNVIPWIGIDTLSSVVIPTVTTAFLIFFFRQS
TKMFPKDLLEAGRMDGLSELGLFFRVYMPTMKTTYAAAAIITFMSSWNNYLWPLIVLQ
TPENQTIPLLISNLGSSYAPDYGVIMIAIVLSTLPTALVFFLMQKHFVAGMVGSVK"
misc_feature complement(265970..266785)
/locus_tag="PPE_00234"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature complement(266030..266596)
/locus_tag="PPE_00234"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(266030..266032,266039..266044,
266051..266056,266060..266065,266072..266077,
266105..266110,266147..266152,266159..266170,
266189..266191,266198..266203,266243..266245,
266294..266296,266303..266308,266318..266320,
266324..266329,266336..266338,266342..266344,
266348..266353,266426..266428,266432..266437,
266444..266473,266477..266488,266516..266518,
266531..266536,266543..266548))
/locus_tag="PPE_00234"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(266153..266170,266426..266470))
/locus_tag="PPE_00234"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(266075..266077,266105..266107,
266114..266116,266150..266152,266366..266368,
266426..266428))
/locus_tag="PPE_00234"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(266222..266224,266234..266239,
266255..266293))
/locus_tag="PPE_00234"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(266788..267684)
/locus_tag="PPE_00235"
/db_xref="GeneID:9772992"
CDS complement(266788..267684)
/locus_tag="PPE_00235"
/note="COGMatches:COG1175; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="lactose ABC transporter permease"
/protein_id="YP_003868655.1"
/db_xref="GI:308067050"
/db_xref="GeneID:9772992"
/translation="MKTAAPKITTTRLKAGMTGWLFISIAVIMIAAFYFYPMIQALIL
SFKTGTGSNLSFNGIDNYKRLFTDKMFITAVKNTFIYLIFQVPLMVILALFISVLLND
KNLKFKGFFRTAIFLPCITSLVAYSVVFKYLFSSDGLVNSLLLNLHVIGTPIQWITDP
FWAKVTIIIAITWRWTGYNMIFYLSGLQNIDSSIYEAARIDGASPIRQFFSITVPLLK
PIILFTSITSTIGTLQLFDEIMNITKGGPGNATSSISQYIYNLSFKYSSDFGYAATVS
YSIVIMIIILSIIQFKVAGEKK"
misc_feature complement(266914..267456)
/locus_tag="PPE_00235"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(266920..266925,266962..266967,
266974..266985,267004..267006,267013..267018,
267058..267060,267109..267111,267118..267123,
267133..267135,267139..267144,267151..267153,
267157..267159,267166..267171,267292..267294,
267298..267303,267310..267339,267343..267354,
267382..267384,267397..267402,267409..267414))
/locus_tag="PPE_00235"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(266968..266985,267292..267336))
/locus_tag="PPE_00235"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(266920..266922,266929..266931,
266965..266967,267184..267186,267292..267294))
/locus_tag="PPE_00235"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(267037..267039,267049..267054,
267070..267108))
/locus_tag="PPE_00235"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(267786..269075)
/locus_tag="PPE_00236"
/db_xref="GeneID:9772993"
CDS complement(267786..269075)
/locus_tag="PPE_00236"
/note="COGMatches:COG1653; PfamMatches:PF01547;
PrositeMatches:PS00013; go_process: transport
(GO:0006810)"
/codon_start=1
/transl_table=11
/product="lactose-binding protein"
/protein_id="YP_003868656.1"
/db_xref="GI:308067051"
/db_xref="GeneID:9772993"
/translation="MKKMSFLLLIASLILLSACSSNSEKAATTTDSGKKEITVWAWDP
NFNIAALKLAKDRYVAKHPDVTVNIVEYAQNDIVQKMNAGLNSGSTKGLPNVVLIEDY
RAQNFLQAYPDSFHDMSSTIKASDFADYKIGPTSYNGKQYGVPFDSGVMGLYVRTDYL
EQAGYKVADLTNIDWDKFIEIGKAVKQKTGKEMLTQDPNDLGLIRGMIQTAGSWYLKE
DGKTPNLAGNPALKEALLTYKSLFDANIVKMNADWSQFLAAFNSGAVASVPTGNWITP
SIKAEASQSGKWAVVPFPKLKNIPESVNASSLGGSSWYVLNSDGQDTAADFLKETFGT
DTELYQDMLSKIGIVGSLNAASSGKAYDVEDPYFGGDKVYKKFAEWTKQVPKVNYGLH
TYAIEDIMTVEIQNYLNGKDVDAVLKDAQGQAEAQLK"
misc_feature complement(267789..269000)
/locus_tag="PPE_00236"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
gene complement(269478..271292)
/locus_tag="PPE_00237"
/db_xref="GeneID:9772994"
CDS complement(269478..271292)
/locus_tag="PPE_00237"
/note="COGMatches:COG2972; PfamMatches:PF00672, PF06580,
PF02518; PrositeMatches:PS50885; go_component: membrane
(GO:0016020), go_component: integral to membrane
(GO:0016021), go_fucntion: ATP binding (GO:0005524)"
/codon_start=1
/transl_table=11
/product="signal transduction protein with a C-terminal
ATPase domain"
/protein_id="YP_003868657.1"
/db_xref="GI:308067052"
/db_xref="GeneID:9772994"
/translation="MKRYIHKIKYQGLFFKIFIVMVVSITAVSLLTSLVTIRMSERLF
AETFSITNAKVLSQIQSSFESFNDSIVNAVTHASENGTVKNYLTGGQSDSINSARIYF
GMAQQMKQIKSNVDAYDVGVAVTGLNGRSFYSDSSYWPVTAEELKSSAITARSVARPA
QLMYQLDTELFQQQMNTTAQKPTPYIIASKPFMERTSGTLYGMIYIAIREPEFRRFYN
NFTSNGNDVLILDKSGLIVSSNRQDLIGQRSSELLGYATRINEQGLNYINADVMNKES
ILLSNYIPSFDFYLVNMIDRQAAIGQIIDVKSVVWICIAIVLIALVIVFLISRRLIRS
LTRLVKQMSTIREKNFDNYIPVTGSYEVRQLSHAYNYMLDELNDYIRKLLETQKGQRN
AELAALQRQINPHFLYNTLASIKMLVLKGNKETAAETINALISLLQNTISNVSETITI
EQEIANMQNYVFINHVRYGQRVQVNYFVSPDCLEYHVPKLIIQPFIENSFFHAFNEKN
VGHIYILVSKTEDTLICEVVDDGDGMDLDGHTAQDGLPNPKSKRQLFTGIGIQNVHNR
ITLLYGEEYGVTISSKKGEGTKVRMTLPLIVKPAPPTP"
misc_feature complement(270150..>270275)
/locus_tag="PPE_00237"
/note="HAMP (Histidine kinases, Adenylyl cyclases, Methyl
binding proteins, Phosphatases) domain; Region: HAMP;
smart00304"
/db_xref="CDD:197640"
misc_feature complement(order(270165..270170,270177..270182,
270186..270191,270198..270203,270207..270212,
270258..270260,270264..270269))
/locus_tag="PPE_00237"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(269508..270164)
/locus_tag="PPE_00237"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG3920"
/db_xref="CDD:33706"
misc_feature complement(269865..270113)
/locus_tag="PPE_00237"
/note="Histidine kinase; Region: His_kinase; pfam06580"
/db_xref="CDD:203479"
misc_feature complement(269508..269828)
/locus_tag="PPE_00237"
/note="Histidine kinase-, DNA gyrase B-, and HSP90-like
ATPase; Region: HATPase_c; pfam02518"
/db_xref="CDD:202270"
gene complement(271330..272886)
/locus_tag="PPE_00238"
/db_xref="GeneID:9772995"
CDS complement(271330..272886)
/locus_tag="PPE_00238"
/note="COGMatches:COG4753; PfamMatches:PF00072, PF00165;
PrositeMatches:PS50110, PS00041, PS01124; go_process:
regulation of transcription, DNA-dependent (GO:0006355),
go_component: intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="chemotaxis protein CheY"
/protein_id="YP_003868658.1"
/db_xref="GI:308067053"
/db_xref="GeneID:9772995"
/translation="MNELCNILIVDDEILVRQGIKHHLSWEQYGFRIVGEASNGKEAL
ELIETLRPHIVITDIVMPIMDGEELTRIVRQNYPDIEVIVLSSYGEFNYVRSTFQQGV
ADYILKPKLDTDELLQVLQRTARKIPSIQYQADANNSQITIDHVIEKLISGYSMDYDA
ELLKQAFPHVRFALIGVEQSAPQKGRSISASDLFSKLTDRVSSACEHIVLRQLPSDVY
AAVILANLDPREVDAWMAAVREVAQETKRVDPQTGWAVSHLFDDFNQISNVYQDELPK
LLSYRFYFPGTALLIEDELPQPVQVNSSFNLKQFTEEMKREHFDTAFQDLRSYVAAMS
GNYTSTAFEFKSLLGNIVFNITILLGNQGYDMKELDAAKYSYFKTINDAPHVHEAVRL
LETFLEEANRQIMAKTQQGSSASMKKLLEYIEEHHAETLNLTTLGQYFHFNPSYLSSY
FTAHHTEGFSEYLNKIRVEKAAELLRSGTMSISDISSTVGYSDPSYFTKVFKKVKGYS
PSQYRREHLY"
misc_feature complement(271339..272877)
/locus_tag="PPE_00238"
/note="Response regulator containing CheY-like receiver
domain and AraC-type DNA-binding domain [Signal
transduction mechanisms]; Region: COG4753"
/db_xref="CDD:34367"
misc_feature complement(272521..272865)
/locus_tag="PPE_00238"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(272560..272565,272572..272574,
272629..272631,272689..272691,272713..272715,
272851..272856))
/locus_tag="PPE_00238"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(272713..272715)
/locus_tag="PPE_00238"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(272689..272697,272701..272706))
/locus_tag="PPE_00238"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(order(272554..272556,272560..272565))
/locus_tag="PPE_00238"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(271345..271449)
/locus_tag="PPE_00238"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene complement(273147..273782)
/gene="udk"
/locus_tag="PPE_00239"
/db_xref="GeneID:9772996"
CDS complement(273147..273782)
/gene="udk"
/locus_tag="PPE_00239"
/EC_number="2.7.1.48"
/note="TIGRFAMsMatches:TIGR00235; COGMatches:COG0572;
PfamMatches:PF00485; PrositeMatches:PS00227; go_process:
biosynthesis (GO:0009058)"
/codon_start=1
/transl_table=11
/product="uridine kinase"
/protein_id="YP_003868659.1"
/db_xref="GI:308067054"
/db_xref="GeneID:9772996"
/translation="MLIIGIAGGTGSGKSTVARAVVERLGSNKVTFISQDNYYKDHSH
LSYDERALVNYDHPFAFDNELLIEHLQCLKKGQATQAPVYDFTVHARSTDETVELLPN
HIVMLEGLHVLSDEKLRSLLDIKVFVDTDPDVRILRRVLRDIEERGRTIHSIHDHYLT
TVKPMHEAFIEPSKKYADLILPEGGHNEVGIQLLSILTEKYLAGDRTWGTV"
misc_feature complement(273198..273776)
/gene="udk"
/locus_tag="PPE_00239"
/note="Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer from
ATP to uridine or cytidine to yield UMP or CMP. In the
primidine nucleotide-salvage pathway; Region: UMPK;
cd02023"
/db_xref="CDD:30196"
misc_feature complement(273198..273776)
/gene="udk"
/locus_tag="PPE_00239"
/note="Uridine kinase [Nucleotide transport and
metabolism]; Region: Udk; COG0572"
/db_xref="CDD:30917"
misc_feature complement(order(273225..273227,273369..273371,
273738..273740))
/gene="udk"
/locus_tag="PPE_00239"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:30196"
misc_feature complement(order(273366..273368,273609..273611,
273675..273677))
/gene="udk"
/locus_tag="PPE_00239"
/note="Sugar specificity; other site"
/db_xref="CDD:30196"
misc_feature complement(order(273342..273344,273516..273518,
273525..273527,273531..273533,273618..273620,
273666..273668))
/gene="udk"
/locus_tag="PPE_00239"
/note="Pyrimidine base specificity; other site"
/db_xref="CDD:30196"
gene complement(273858..274379)
/locus_tag="PPE_00240"
/db_xref="GeneID:9772997"
CDS complement(273858..274379)
/locus_tag="PPE_00240"
/note="COGMatches:COG4283; PfamMatches:PF08020"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868660.1"
/db_xref="GI:308067055"
/db_xref="GeneID:9772997"
/translation="MSSYDYASKLELKEAIHASYLRFDGEFQEIDESQKDIRIPEVDK
TPAEMIAYQLGWLHLVMTWDRDEREGKTVIMPAPNYKWNRLGELYQSFYKTYSHQSLR
ELRDMFKLTEQKWLDWIDTLSHEELFTQGVHNWTGTNPNWPIARWIHINSVAPFKTFR
AKIRKWKKYKVQQ"
misc_feature complement(273876..274364)
/locus_tag="PPE_00240"
/note="Protein of unknown function (DUF1706); Region:
DUF1706; pfam08020"
/db_xref="CDD:149224"
gene 274658..276664
/locus_tag="PPE_00241"
/db_xref="GeneID:9772998"
CDS 274658..276664
/locus_tag="PPE_00241"
/note="COGMatches:COG3866; PfamMatches:PF00544"
/codon_start=1
/transl_table=11
/product="pectate lyase"
/protein_id="YP_003868661.1"
/db_xref="GI:308067056"
/db_xref="GeneID:9772998"
/translation="MKSSLLKKCASVMLSSTLVLSLSLPLLGHAHADGNGSTYQQSSR
SEGHSVKGNASWTNYSVQADVYVNDFNGSNRVYVAGRYTDADNFYAASLYNKKDGALE
IRKKVKGSMKTLATNKNYKLDTNTWYRVKLELSGSEIKMYVNDQLELSATDTSLTAGA
IGLVTSKAAAQFDNVIVSGASSEVDPGTPPVNPTPGTEQPTPGVNPDVTSKNNYNLTG
FSYGNTGGGNIADTDANYKKVYNAVDLNEALKKGSKVKVIEIMNDLDLGWNEIPSAAK
VMPFSANNPVQTHPVLKKTGVSKVYIENMNGVTIFSANGAKIKHAGFVIKRSSNLIFR
NLEFDELWEWDEATKGNYDKNDWDYVTIEGTSSKVWIDHCTFNKAYDGLVDVKKGSNG
VTISWSLFKGDDRSSNSWVTQQVNAMEADKSSYPMYAYLRSSAVGMSKEDIIDIAAGQ
KKAHLIGATEMASDNADLEVTLHHNYYLDIQDRMPRLRAGNAHAYNIVMDDAGLARAK
KRITSDMAKAIAAKGYHFDVVGNGAISTENGAVLLEKSYLIDMFSPVRNNQKDPNKAD
YTGKIKAEDVIFSDNGTVFRGGSDDANSPLAPYPAKTKDFSWNGFTTLPYSYTAEDPA
NLVAQLQAKDGAGAGKLNWSSENWLKTVYNTSVAKNAIVEEDSQ"
misc_feature 274826..>275119
/locus_tag="PPE_00241"
/note="Concanavalin A-like lectin/glucanases superfamily;
Region: Laminin_G_3; pfam13385"
/db_xref="CDD:205563"
misc_feature 275600..276145
/locus_tag="PPE_00241"
/note="Pectate lyase; Region: Pec_lyase_C; cl01593"
/db_xref="CDD:207458"
gene complement(276751..277095)
/locus_tag="PPE_00242"
/db_xref="GeneID:9772999"
CDS complement(276751..277095)
/locus_tag="PPE_00242"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868662.1"
/db_xref="GI:308067057"
/db_xref="GeneID:9772999"
/translation="MAIRPPQTLKSTGRKVPVTRYRNVSPTQTLRRFTVIWANNDGVP
FNTSGFFATLRRLDGSFVQAAGFDRFGTARFSRVRTPTNQPYILRTFRDDGVLFRVRS
VPAGVSSFVVIG"
gene complement(277244..280207)
/locus_tag="PPE_00243"
/db_xref="GeneID:9773000"
CDS complement(277244..280207)
/locus_tag="PPE_00243"
/note="COGMatches:COG0553; PfamMatches:PF00176, PF00271;
go_fucntion: ATP binding (GO:0005524)"
/codon_start=1
/transl_table=11
/product="helicase"
/protein_id="YP_003868663.1"
/db_xref="GI:308067058"
/db_xref="GeneID:9773000"
/translation="MSQYTETITVHIQLTTYGDALIYGDSSMNYSISGQILKQRLFAW
HEASFYGTELEIQHVQDTDIILLPSEQVIPFLAERELLKHIEWIWDEANAPWLRLIPL
LAHCIEAKAYVPSFTAFQTGKLQWKWDAEALENIQPAELALLGSLEKDEQEGLVAAFS
AAVFQRWYGTEAEAADLRREYPILFAPNRPAAAGLDAQAWLIAIGWKADTAPFRPLLQ
LLEPELEDDEPSWQLKLVLQDKQDPALLVSVQLADDGYASGSWPDAWTVHVRERSGGW
LERLTAILPAGQRAGSHDDVLNRPLSDEAAWQFLTTDSQRLLESGWQVLLPAWWEAAT
RKKPKLRAKVRPGEGAGERTKGSSLFGLDSIVQFDWRVAIGDADLSESEFAELVARNE
RLVRFRGQWIALDPALLAQIRRAMAGIDSAQGLSFQDILQLHLLGNADEPEGDASGEQ
PEDAARFRLEVELNAHLLKLISQLGRQSEWPALDVPDGLQAELRTYQRDGYAWLAFLR
RFGLGACLADDMGLGKTVQFITYLLHLQDIAAETGVRSSSLLICPTSVLGNWQKELSR
FAPSLKVMLHYGSKREQGDLFREEVEQADVILTSFATATLDQELLQSMTWDSVCLDEA
QNIKNAQTKQSTAVRSFPARHRIALTGTPIENRLSELWSIYDFINPGYLGSSRAFSNR
FINAIEKEHNEQRTLDLQKLVQPFMLRRKKKDPAIQLDLPDKNEMKTYIHLTSEQGAL
YDQIVKELMERMQKLEGIERKGAILSALTQLKQLCDHPALLTKEAPPDTAASGYSPSD
LEAVISRSSKLERILAMVKELREEGERCLIFTQYIGMGQMLQRVLAQELQEPVLYLNG
STSKTARDRMIDQFQSHTLPPAEQPSVFILSLKAGGVGLNLTAANHVFHFDRWWNPAV
ENQATDRAYRMGQTKDVQVHKFISLGTLEERIDEMLESKQQLSDQIITSTEGWITELS
TDALKDLFTLRRDWA"
misc_feature complement(278903..279307)
/locus_tag="PPE_00243"
/note="SNF2 Helicase protein; Region: DUF3670; pfam12419"
/db_xref="CDD:204912"
misc_feature complement(277865..278722)
/locus_tag="PPE_00243"
/note="SNF2 family N-terminal domain; Region: SNF2_N;
pfam00176"
/db_xref="CDD:201060"
misc_feature complement(278249..278662)
/locus_tag="PPE_00243"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature complement(278633..278647)
/locus_tag="PPE_00243"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature complement(278333..278344)
/locus_tag="PPE_00243"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature complement(277409..277798)
/locus_tag="PPE_00243"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(277538..277546,277640..277645,
277706..277717))
/locus_tag="PPE_00243"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(277436..277438,277445..277447,
277457..277459,277520..277522))
/locus_tag="PPE_00243"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene complement(280204..281865)
/locus_tag="PPE_00244"
/db_xref="GeneID:9773001"
CDS complement(280204..281865)
/locus_tag="PPE_00244"
/note="PfamMatches:PF04434; PrositeMatches:PS00012,
PS50966"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868664.1"
/db_xref="GI:308067059"
/db_xref="GeneID:9773001"
/translation="MHMKPTYLMDDIQWQQLIENVADHFNDVTIKRGFQYFKQGKVKE
FAMPDADHIAAVVDGSELYEVDLHLSAFAASRCTCPVHTNCKHMIAVLLNYANEQELS
VHALVNAHSTGFTRLATKADKRNTPPSRSNLSPDHKETTRTALSKTASKIPDMPISGW
HDLFDQCIALNHVNTQNSQYVQSALASIYAVKPPLSPGMQQLYGLHAHLRVLEKLVPQ
SPMSGYPTHTYMGYYTQIAADELKEAIERDFESPLELTDEPMQEARMAETLAYLRRKM
LTESRNGTYFSDTYYQFWLHWVYPERQDSSIYTEELQHLQAAEEDLGTTLARLPWMLA
RSWMHIFQSHDNEAWVLLQEAERAFPLKISSSQLLLFLQALRKAEDWARLKDGLRHIG
PLLHSHRDDHLQDYIHDWDVVLQHLPEAEQDMWDTLVGMLPFAGRMYEEALLAHEKWR
SWIDYQLSIRSEPLSFRVSVLQPIEKNAPELLLPFYHQAVERYVLEKNRASYKAAVKL
LKRLFKLYKKMKQESRWELFFTTFTSRHSRLRALQEELRKGKLLS"
misc_feature complement(281581..281679)
/locus_tag="PPE_00244"
/note="SWIM zinc finger; Region: SWIM; pfam04434"
/db_xref="CDD:146865"
gene 282126..282776
/locus_tag="PPE_00245"
/db_xref="GeneID:9773002"
CDS 282126..282776
/locus_tag="PPE_00245"
/note="COGMatches:COG0400; PfamMatches:PF02230"
/codon_start=1
/transl_table=11
/product="esterase"
/protein_id="YP_003868665.1"
/db_xref="GI:308067060"
/db_xref="GeneID:9773002"
/translation="MSSLYSYDIHLPSQLDPNRTYPTIFTLHGKGSNEQDMYGVVGPL
SEEFIIIGIRGGLPMSGGFQYYELKSLGNPLREQFDRSIKQLQAFVQYATDKYPVDPS
KRYFLGFSQGAILSMSLALTLGNQLKGIVALNGYVPDFVKTEYSLQSTEDVSVFISHG
EYDSVFPVSIGHETAAYFQTRTSHSTFKTYPTDHGVSPDNQRDVLQWLRENAGVKP"
misc_feature 282126..282764
/locus_tag="PPE_00245"
/note="Predicted esterase [General function prediction
only]; Region: COG0400"
/db_xref="CDD:30749"
misc_feature 282189..>282662
/locus_tag="PPE_00245"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 282964..283224
/locus_tag="PPE_00246"
/db_xref="GeneID:9773003"
CDS 282964..283224
/locus_tag="PPE_00246"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868666.1"
/db_xref="GI:308067061"
/db_xref="GeneID:9773003"
/translation="MVKSQSKEKITIEELVDSYSINIIRTAKKIISARINFDKWLLED
LIQQGYVGLIEAQKIFLKVLRNSKKCSTRLIGSCGLFALNQL"
gene 283360..283542
/locus_tag="PPE_00247"
/db_xref="GeneID:9773004"
CDS 283360..283542
/locus_tag="PPE_00247"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868667.1"
/db_xref="GI:308067062"
/db_xref="GeneID:9773004"
/translation="MTVIDTFGDSTDAFKRYNELHRVDPQREYCFFHTSRAKIMAKER
YMVCRSMGYWALIFLN"
gene complement(283712..284371)
/locus_tag="PPE_00248"
/db_xref="GeneID:9773005"
CDS complement(283712..284371)
/locus_tag="PPE_00248"
/EC_number="5.4.2.6"
/note="COGMatches:COG0637; PfamMatches:PF00702;
go_process: metabolism (GO:0008152)"
/codon_start=1
/transl_table=11
/product="beta-phosphoglucomutase"
/protein_id="YP_003868668.1"
/db_xref="GI:308067063"
/db_xref="GeneID:9773005"
/translation="MKAVIFDLDGVITDTAEYHFQAWGSLAAALSIPFDREFNEQLKG
ISRTESLDKILARGNLSDKFSEEGKQELATRKNMEYQRLISAVTPSDILPGIKALLTE
LREARIGIALASASKNAAFILERLELAYYFDSVVDVTAIRHGKPDPEIFLTGAANLGV
QPADCIGIEDAQAGIQAIKGAGMFAVGVGTPSQMQGADIVVATTAELSLSMLEAHFIR
G"
misc_feature complement(283805..284365)
/locus_tag="PPE_00248"
/note="beta-phosphoglucomutase; Region: bPGM; TIGR01990"
/db_xref="CDD:188190"
misc_feature complement(<283955..284362)
/locus_tag="PPE_00248"
/note="haloacid dehalogenase-like hydrolase; Region: HAD;
pfam12710"
/db_xref="CDD:205034"
misc_feature complement(283808..284122)
/locus_tag="PPE_00248"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature complement(284030..284032)
/locus_tag="PPE_00248"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(284397..286679)
/locus_tag="PPE_00249"
/db_xref="GeneID:9773006"
CDS complement(284397..286679)
/locus_tag="PPE_00249"
/EC_number="2.4.1.8"
/EC_number="3.2.1.-"
/note="COGMatches:COG1554; PfamMatches:PF03636, PF03632,
PF03633; PrositeMatches:PS00237"
/codon_start=1
/transl_table=11
/product="glycosyl hydrolase"
/protein_id="YP_003868669.1"
/db_xref="GI:308067064"
/db_xref="GeneID:9773006"
/translation="MVYNRLFDVDSWKLTTHTLHSTHMRLQESLTSIGNGYMGMRGNF
EEAYSGDHHQGTYISGVWFPDKTKVGWWKNGYPEYFGKVINAMNFIGIRLIVNQEEVD
LFTAHISDFVQELDMKQGILRRACTVNDQVRITTERFLSITTRELCLIDYQVENISEQ
PLTIELVPYLDGNMKNEDTNYDEVFWLEEAREVQEQFISLSTTTIDNPFGIPRFTVNA
TMGIVTEGQDQQTTEEGFLYAARHYQYSVAPGDSIQLQKFVAVTTSRDMEKDALIPQA
ERIAVEAVNKGYTSLKQEHIDAWARRWDKADIEIEGDTEAQQGIRFNIFQLFSTYYGE
DARLNIGPKGFTGEKYGGATYWDTEAYAVPMYLALADPEVTRNLLLYRHQHLEGAKHN
AAQQGLRGALYPMVTFTGVECHNEWEITFEEIHRNGAIAYAIYNYTNYTGDLTYLHDY
GIDVLVEISRFWADRVHFSKSQQQYMIHGVTGPNEYENNVNNNWYTNTLAAWVLKYTL
SVLPQISTEKAQRLAVTADELAHWQDIVTHMYYPYDEERGVFVQHDTFMDKDLQPVST
LHPSNLPLNQKWSWDKILRSCFIKQADVLQGLYFFGDQFTLEEKARNFAFYEPMTVHE
SSLSPSIHAVLAAELKMEDKAVEMYKRTARLDLDNYNNDTEDGLHITSMTGSWLAIVQ
GFAGMRTYNETLSFSPFLPKDWNKYTFKINYRGRLLSILVQESEVVITLLDGEPLTLE
LYGQPTHITSGQPLMASSAS"
misc_feature complement(284418..286667)
/locus_tag="PPE_00249"
/note="maltose phosphorylase; Provisional; Region:
PRK13807"
/db_xref="CDD:184339"
misc_feature complement(285882..286643)
/locus_tag="PPE_00249"
/note="Glycosyl hydrolase family 65, N-terminal domain;
Region: Glyco_hydro_65N; pfam03636"
/db_xref="CDD:146332"
misc_feature complement(284598..285719)
/locus_tag="PPE_00249"
/note="Glycosyl hydrolase family 65 central catalytic
domain; Region: Glyco_hydro_65m; pfam03632"
/db_xref="CDD:146330"
misc_feature complement(284445..284588)
/locus_tag="PPE_00249"
/note="Glycosyl hydrolase family 65, C-terminal domain;
Region: Glyco_hydro_65C; pfam03633"
/db_xref="CDD:112450"
gene complement(286835..287842)
/locus_tag="PPE_00250"
/db_xref="GeneID:9773007"
CDS complement(286835..287842)
/locus_tag="PPE_00250"
/note="COGMatches:COG1609; PfamMatches:PF00532"
/codon_start=1
/transl_table=11
/product="LacI family transcriptional regulator"
/protein_id="YP_003868670.1"
/db_xref="GI:308067065"
/db_xref="GeneID:9773007"
/translation="MAVTIKDVAKRANVATSTVSRVIQDSPKISEATKARVRKEMKAL
GYEPNYSAQSLANRVTQSIGIIMPESDVAIFQNPFFPESLRGISEWVNEHNYTLSIVT
GKTSDELLSRVKLMTRTGRVDGYIVLYSKQKDSIVEYLHKEKIPYTVIGKPQQFVSET
THVDNDNYQAAKDVVTYLTGLNHQHIAYVGGDHEHIVNIERLRGYQDALREAGLPLPK
EYVVREPFNLEDMRTLLQATPPPTAMIVSDDLVAMAVQKMLSQLGVSMPEQLSMVSFN
NLMLAELMNPPLTSVDIDIFTLGYQAAKSLIEKIEDPKELTKHIIVPHRIVERESSQV
L"
misc_feature complement(286850..287836)
/locus_tag="PPE_00250"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature complement(287672..287827)
/locus_tag="PPE_00250"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature complement(order(287675..287680,287684..287689,
287696..287698,287705..287707,287744..287746,
287753..287758,287771..287773,287780..287785,
287789..287803,287825..287827))
/locus_tag="PPE_00250"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature complement(287678..287707)
/locus_tag="PPE_00250"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature complement(286862..287659)
/locus_tag="PPE_00250"
/note="Ligand-binding domain of uncharacterized
transcription regulator ycjW which is a member of the
LacI-GalR family repressors; Region:
PBP1_ycjW_transcription_regulator_like; cd06294"
/db_xref="CDD:107289"
misc_feature complement(order(287060..287065,287072..287074,
287084..287086,287156..287158,287480..287488,
287495..287497,287504..287506,287537..287539,
287543..287557,287576..287581,287585..287590,
287597..287605,287657..287659))
/locus_tag="PPE_00250"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:107289"
misc_feature complement(order(286964..286966,287015..287017,
287162..287164,287240..287242,287348..287350,
287390..287392,287459..287461,287594..287596,
287603..287608))
/locus_tag="PPE_00250"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107289"
gene 288084..289748
/locus_tag="PPE_00251"
/db_xref="GeneID:9773008"
CDS 288084..289748
/locus_tag="PPE_00251"
/EC_number="2.7.1.69"
/note="COGMatches:COG1263; PfamMatches:PF02378, PF00367;
PrositeMatches:PS01035, PS51098, PS51103; go_component:
membrane (GO:0016020)"
/codon_start=1
/transl_table=11
/product="PTS system
glucose/maltose/N-acetylglucosamine-specific transporter
subunit IIC"
/protein_id="YP_003868671.1"
/db_xref="GI:308067066"
/db_xref="GeneID:9773008"
/translation="MKKLLSFDFWQKLGKALLVVVAVMPAAGIMISLGKVVAMLAGDI
HFWVTVGGVMENLGWGIINNLHILFAVAIGGSWAKERAGGAFAALIAFVLINISTGTI
LGVSSKMLTQEGATTHTLFGATIPVSGYFTSVLGAPALNMGVFVGIISGFVGAVVFNK
YYNYRKLPDALAFFNGKRFVPFVVILWSVIVSLIMSAIWPFVQGGINQFGIWLATSGE
SAPFVAPFVYGTLERLLIPFGLHHMLTVPINYTQLGGVYTTLTGSGAGSVVAGQDPLW
LAWASDLSALRGTDPTAYNSLLEGVTPARFKVGQMIGGAGILMGLAVAMYRRVDKDKR
GKYKSMIFSAAAAVFLTGVTEPLEFMFMFVAPVLYVVYAILTGIAFGMADIIHLRLHS
FGMIELLTRMPLSINAGLVQDIINFVLTCVVFAVATYFIAYFMIGKFQMATPGRLGNY
TDEEPQGTSEAGSTKTEGVAATSTQNQLATDIIKTLGGEQNIVEVDACMTRLRVTVKD
TDAVGDEKTWKALGALGLIKVDSGVQAVYGPKADVLKSDIQDILNR"
misc_feature 288090..289742
/locus_tag="PPE_00251"
/note="PTS system, IIBC component; Region: PTS-II-BC-unk1;
TIGR02003"
/db_xref="CDD:131058"
misc_feature 288165..289445
/locus_tag="PPE_00251"
/note="Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
transport and metabolism]; Region: PtsG; COG1263"
/db_xref="CDD:31455"
misc_feature 289509..289739
/locus_tag="PPE_00251"
/note="PTS_IIB, PTS system, glucose/sucrose specific IIB
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIB_glc; cd00212"
/db_xref="CDD:29267"
misc_feature 289572..289592
/locus_tag="PPE_00251"
/note="active site turn [active]"
/db_xref="CDD:29267"
misc_feature 289575..289577
/locus_tag="PPE_00251"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29267"
gene 289754..290575
/locus_tag="PPE_00252"
/db_xref="GeneID:9773009"
CDS 289754..290575
/locus_tag="PPE_00252"
/note="PfamMatches:PF03372"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868672.1"
/db_xref="GI:308067067"
/db_xref="GeneID:9773009"
/translation="MKLLTLNAHAWMEENQHDKLKQLAAFIDEQQFDVIALQEVNQSM
EETPLSPDDLGAYYSADPEVGIKRDNYAYVLNGLLSDSYHWTWAPAHIGFAKYDEGLA
ILSKTPITATVNEYVSSLQDYDNYRSRKIVGIQTVVGGVQAWFVSGHYNWWNDEESFR
GLWDRTTKVLHSFAPTPVFMMGDFNNAAEVRGEGYDYVLQSGWSDTYPNAAVRDEGHT
VIKAIAGWESNAEPLRIDFIFSNKAVQVQSSTVVLNGKTGRVVSDHFGVAVELKL"
misc_feature 289760..290566
/locus_tag="PPE_00252"
/note="Streptococcus agalactiae RgfB, part of a putative
two component signal transduction system, and related
proteins; Region: RgfB-like; cd09079"
/db_xref="CDD:197313"
misc_feature order(289772..289774,289868..289870,290198..290200,
290300..290302,290306..290308,290459..290461,
290540..290545)
/locus_tag="PPE_00252"
/note="putative catalytic site [active]"
/db_xref="CDD:197313"
misc_feature order(289868..289870,290540..290542)
/locus_tag="PPE_00252"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197313"
misc_feature order(290198..290200,290306..290308,290543..290545)
/locus_tag="PPE_00252"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197313"
gene 290874..291161
/locus_tag="PPE_00253"
/db_xref="GeneID:9773010"
CDS 290874..291161
/locus_tag="PPE_00253"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868673.1"
/db_xref="GI:308067068"
/db_xref="GeneID:9773010"
/translation="MNIAKYTIHGSLHKWQKNGMVIFPLMLAIRLITIIQAILRFKYK
CLTITSKPLFDLASWEPLFGWHLITDERLQVELAGSHIGYASEFLVVPKSQ"
gene complement(291220..291717)
/locus_tag="PPE_00254"
/db_xref="GeneID:9773011"
CDS complement(291220..291717)
/locus_tag="PPE_00254"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868674.1"
/db_xref="GI:308067069"
/db_xref="GeneID:9773011"
/translation="MSDANQLFGQALVKSLVGERGHIRVARALPDIDVELAGKKNAEM
PYSIYQLLKHMIYWQQFMLEHLEGRKPQLPGNVMESWPEETGPQSEEAWQAVINEFLQ
GVDQAVHIAETAQLDDSLAHFPGETKAGLLRNIASHNSYHLGEIVLLRRIYGAWPPPG
GGFPA"
misc_feature complement(291262..291648)
/locus_tag="PPE_00254"
/note="Mycothiol maleylpyruvate isomerase N-terminal
domain; Region: MDMPI_N; cl00986"
/db_xref="CDD:207273"
misc_feature complement(291280..>291579)
/locus_tag="PPE_00254"
/note="DinB superfamily; Region: DinB_2; pfam12867"
/db_xref="CDD:205116"
gene 292037..292540
/locus_tag="PPE_00255"
/db_xref="GeneID:9773012"
CDS 292037..292540
/locus_tag="PPE_00255"
/note="COGMatches:COG1846; PfamMatches:PF01047;
PrositeMatches:PS01117, PS50995; go_component:
intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator yvmB"
/protein_id="YP_003868675.1"
/db_xref="GI:308067070"
/db_xref="GeneID:9773012"
/translation="MEKATSVQHVYDLLIKMNHQWEQHQQRESMTFLEEIREHFDGMT
SLNMTDVHVIDCIGRHEPINVTTLADRIELSKGTVSKVSTKLLKEGWIRRTQLNDNKK
EIYFRLTPLGKRLFLVHERLHVKVQQQLFQFLDRYSSEELNVLKRLLSDGVDLLEAME
WQDKSLD"
misc_feature 292172..292462
/locus_tag="PPE_00255"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature 292172..292348
/locus_tag="PPE_00255"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
gene complement(292621..293550)
/locus_tag="PPE_00256"
/db_xref="GeneID:9773013"
CDS complement(292621..293550)
/locus_tag="PPE_00256"
/note="COGMatches:COG0784; PfamMatches:PF00072;
PrositeMatches:PS50110; go_process: regulation of
transcription, DNA-dependent (GO:0006355)"
/codon_start=1
/transl_table=11
/product="sensory transduction protein"
/protein_id="YP_003868676.1"
/db_xref="GI:308067071"
/db_xref="GeneID:9773013"
/translation="MRFYIVDDDQGIRSMLADIIEDEGLGEVIGEAEDGSYVNSGLLE
LNRIDVLLIDLLMPLRDGIQTVRALGDQFSGKIIMISRIESKNMIGEAYSLGIEYYVA
KPLNRLEIIAVIHKVAERLRMQQSITDIQRTLQGLSMFTSNNPTATIEPTRNIVTSGQ
FLLSEMGMIGEAGSMDLLDMLEFLDQYEEETGNLSPYLFPPLKDIFANVASKRLGASA
SAVELSKEIKASEQRVRRAIFQTLSHIVSLGLTDYTHPKFENYASKFFDFTEIRKKML
ELQNNVEPSLSQARINTKKFVQVLYMEAKRLLH"
misc_feature complement(293197..293538)
/locus_tag="PPE_00256"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(293209..293538)
/locus_tag="PPE_00256"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature complement(order(293239..293244,293251..293253,
293308..293310,293365..293367,293389..293391,
293527..293532))
/locus_tag="PPE_00256"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(293389..293391)
/locus_tag="PPE_00256"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(293365..293373,293377..293382))
/locus_tag="PPE_00256"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(293236..293244)
/locus_tag="PPE_00256"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(292651..293082)
/locus_tag="PPE_00256"
/note="YcbB domain; Region: YcbB; pfam08664"
/db_xref="CDD:149650"
gene complement(293556..294860)
/locus_tag="PPE_00257"
/db_xref="GeneID:9773014"
CDS complement(293556..294860)
/locus_tag="PPE_00257"
/EC_number="2.7.3.-"
/note="COGMatches:COG0642; PfamMatches:PF02518;
PrositeMatches:PS50109; go_fucntion: ATP binding
(GO:0005524)"
/codon_start=1
/transl_table=11
/product="sensor-like histidine kinase ycbA"
/protein_id="YP_003868677.1"
/db_xref="GI:308067072"
/db_xref="GeneID:9773014"
/translation="MKLNTLLFLLMLVFVPLAGELNIHPFANTFRLSFGTPVFFFFLL
SIRHIPPTLSGVLAGIAVVAFRILLNHYTQPGLPFEELLTLHGPTFFYYMVYGLLFQV
LNINAEPYRALRVGILSVGIEVAASVSELSVRWSMDGDFWDIIKISKVAFMAMIRSFF
VLGFYNMIRLNQSVQHEEAQRQQTERILLLVSDLYEESVQLGKTLSHAEQITRESYEL
YRELQQDESLKDREHYARQALRISGQVHEIKKDSQRIFAGLSKLIDAESGVHYMASQE
LGELIIRTNSKYAQSLDKSIRFTLDVDPLLPKLHVYTVLTLINNLTANAVEAMKDSGR
IDVSIRCLPGKEDIASFSVTDNGPGIPQRKREMVFTPGYTTKYDEEGQPSTGMGLFYV
REVAESLEGMIELQQVEEENSDRLQTTFRITLPLRKLTEKGR"
misc_feature complement(293580..294611)
/locus_tag="PPE_00257"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(293589..293912)
/locus_tag="PPE_00257"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(293601..293603,293607..293609,
293625..293627,293640..293642,293646..293648,
293694..293705,293781..293786,293790..293792,
293796..293798,293802..293804,293880..293882,
293889..293891,293901..293903))
/locus_tag="PPE_00257"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(293889..293891)
/locus_tag="PPE_00257"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(293697..293699,293703..293705,
293784..293786,293790..293792))
/locus_tag="PPE_00257"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 295072..296325
/locus_tag="PPE_00258"
/db_xref="GeneID:9773015"
CDS 295072..296325
/locus_tag="PPE_00258"
/note="COGMatches:COG1301; PfamMatches:PF00375;
PrositeMatches:PS00713, PS00714; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="Proton/sodium-glutamate symport protein
(glutamate-aspartate carrier protein)"
/protein_id="YP_003868678.1"
/db_xref="GI:308067073"
/db_xref="GeneID:9773015"
/translation="MKKINLTMQIFIGLALGIIIGALFYGNSGVEVYLKPIGDIFIRL
IKMIVVPIVISTLIIGVAGVGDMKKLGKLGGKSILYFEIVTTIAILFGLLVANLVRPG
DGVDMSHLAKSDIHSYVETAEKSGHSFIDTIVHIVPTNIIQALGEGDMLAIIFFSVLF
GLGVAAIGDRGKPVLNFFEGVADAMFWVTNQVMRLAPFGVFALIGTTVAKFGLASLWP
LLKLVLSVYGSMILFIVIVFGIIAKLCGTRLWTMVKILKSELLLAYSTASSESVLPKI
MEKMEKFGCPKGITSFVIPIGYSFNLDGSTLYQALAAIFIAQMYGIDLPITTQITLVL
VLIISSKGIAGVPGASFVVLLATLGAVNLPLEGLAFIAGIDRILDMARTVVNVLGNSL
AAVVMSKWEGQYDKEKGEEYVASIK"
misc_feature 295144..296295
/locus_tag="PPE_00258"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:31492"
misc_feature 295171..296322
/locus_tag="PPE_00258"
/note="Sodium:dicarboxylate symporter family; Region: SDF;
cl00573"
/db_xref="CDD:207114"
gene 296583..298094
/locus_tag="PPE_00259"
/db_xref="GeneID:9773016"
CDS 296583..298094
/locus_tag="PPE_00259"
/note="COGMatches:COG2202; PfamMatches:PF00015;
PrositeMatches:PS50113, PS50111; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="PAS/PAC domain containing protein"
/protein_id="YP_003868679.1"
/db_xref="GI:308067074"
/db_xref="GeneID:9773016"
/translation="MFLKKNETHSLAPLVEESRKLSQRIQQKDYSAAIQVSSKSSEVQ
EIANNVNQALESMKNDAQHVDIRLKLVTKAIEIGLWDMEVVAGDPVNPSNTFTWSEEF
RAMLGYQSEKDFPNVLNSWASRLHPEDQDRSLAALSDHLLDFTGKTPYDVQYRLKLKH
GEYRWFRATGTTIRDQQGVPLRIAGALLDVHDQKIKSEELQALVTRYDLINLVLVEAP
YDVNIIGGDIENPDSIFWWSPQFRQTLGFKDEQDFPSKLSSWASILYPEDAEMAIKVL
NDHLNDYTGRTPYEMECRLVRKNGEHRWYYCSGKTLRDSKGVPIRIAGTIRDITVEKE
KQAVADELTLKIQHLSDSITEMVNGVNSVSNQAQELATAQEQSTDAANQAKVSAEETQ
NISNFIKEIANQTNLLGLNAAIEASRAGEQGRGFAVVADEVRKLAIHSADATGNIETS
LDEMKTLIERILHNIGNMSTLTQTQAALTQQVNASTDEINSMSKALLDFARTM"
misc_feature 296871..297137
/locus_tag="PPE_00259"
/note="PAS fold; Region: PAS_3; pfam08447"
/db_xref="CDD:203948"
misc_feature 296874..297152
/locus_tag="PPE_00259"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature order(296874..296876,296886..296888,296904..296906,
296952..296963,297048..297050,297063..297065)
/locus_tag="PPE_00259"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature order(296943..296945,296955..296957,296979..296981,
296988..296993,297084..297086,297090..297092)
/locus_tag="PPE_00259"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature 297282..297569
/locus_tag="PPE_00259"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature 297282..297560
/locus_tag="PPE_00259"
/note="PAS fold; Region: PAS_3; pfam08447"
/db_xref="CDD:203948"
misc_feature order(297291..297293,297303..297305,297321..297323,
297369..297380,297465..297467,297480..297482)
/locus_tag="PPE_00259"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature order(297360..297362,297372..297374,297405..297407,
297414..297419,297501..297503,297507..297509)
/locus_tag="PPE_00259"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature 297597..>297977
/locus_tag="PPE_00259"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature 297621..298064
/locus_tag="PPE_00259"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(297645..297650,297657..297662,297669..297671,
297678..297683,297687..297692,297699..297701,
297708..297713,297720..297722,297729..297734,
297741..297746,297750..297752,297759..297764,
297771..297773,297774..297776,297783..297785,
297792..297797,297804..297806,297816..297818,
297825..297827,297846..297848,297858..297860,
297867..297869,297876..297881,297888..297890,
297897..297902,297909..297914,297918..297923,
297930..297935,297972..297977,297984..297986,
297993..297998,298005..298007,298014..298019,
298023..298028,298035..298040,298047..298049,
298056..298061)
/locus_tag="PPE_00259"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 297792..297893
/locus_tag="PPE_00259"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene 298410..298772
/locus_tag="PPE_00260"
/db_xref="GeneID:9773017"
CDS 298410..298772
/locus_tag="PPE_00260"
/note="COGMatches:COG3759; PfamMatches:PF06993"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868680.1"
/db_xref="GI:308067075"
/db_xref="GeneID:9773017"
/translation="MSLLSSILVGIVALEHVYILILEMFLWTTPRAMRTFGTSKELAE
ASKSLAANQGLYNGFLAAGLVWGLFYPEPVIGRQIQLFFVICVVVAAVYGALTANKSI
LLKQGLPAILALISLWIL"
misc_feature 298434..298766
/locus_tag="PPE_00260"
/note="Protein of unknown function (DUF1304); Region:
DUF1304; pfam06993"
/db_xref="CDD:148549"
gene 298930..300549
/locus_tag="PPE_00261"
/db_xref="GeneID:9773018"
CDS 298930..300549
/locus_tag="PPE_00261"
/note="COGMatches:COG0747; PfamMatches:PF00496;
PrositeMatches:PS00013; go_process: transport
(GO:0006810)"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter periplasmic protein"
/protein_id="YP_003868681.1"
/db_xref="GI:308067076"
/db_xref="GeneID:9773018"
/translation="MRRNLTGVLVFIVLMLVVSACSGGNSGSTSETNGNTPSTAATTA
DNGQPKDGGSLIIGVQADPVVLNPNYAGDRVSLTIDQAIFAPLFQVNNGKKTFYLADS
LTPSADKLTYTLKLKKNLTWHDGEKLTADDVVFTINKILDEKQHSFLRSNFMVNGKPV
QASKVDDTTVDFKLPQPAPAFEAALVQVSPIPKHIFENEADIEKSTKNNSPIGSGPFK
FKEYKTGEYVTLERFDNYVGGKPHLDSVTYRIVKDSNAANLALQNGEINVNYLDPQNV
ETIKATDKFDIFPYSEGRLAYLMFNENSDTKQLNKKEVRQALSYALNQDELIQVSYGS
KDYADTAKSALTQDVLYHTNDVAFFNNDVNKAKELLKSAGAEGLKLRIIIPGGNKVQE
AQALYIQQKLKDIGVQLDVNSMDSSAWSQKFVDTNAKDFDLAISGYIMGYDPDAYRIL
YSTGSSSNYSHYSNKEVDKLLEEGAGESDTTKRGEIYKKVQELLAEDAVIYPIAYTKT
IVAFDKQYGGIDQAVLKPVVIFEDLSKIYHK"
misc_feature 299092..300486
/locus_tag="PPE_00261"
/note="The substrate-binding domain of an ABC-type
nickel/oligopeptide-like import system contains the type 2
periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like; cd00995"
/db_xref="CDD:173853"
misc_feature 299224..300270
/locus_tag="PPE_00261"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene 300622..301572
/locus_tag="PPE_00262"
/db_xref="GeneID:9773019"
CDS 300622..301572
/locus_tag="PPE_00262"
/note="COGMatches:COG0601; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_003868682.1"
/db_xref="GI:308067077"
/db_xref="GeneID:9773019"
/translation="MRQLIARRLLQVIPMLFFVSIVCFGLIKLAPGDPVLSFVTPNMH
LEDIERMRHSLGLDQPAYVQYILWLKKSLTGDLGYSLINHQPVLDQILDRLPATAGLM
GASIILAVLIAIPLGLIAAANRNRWIDKLINLMSYIGISVPLFWLGILLIYLFAIYLH
WLPSTGMRTIGTDSVLDVIKHGILPCFVLAFGFLSVYVRYIRSSTITQLKEEYVQIQY
AFGSGKRLVLFRHVLKHVLLPIITLLGMSVADLVAGAIVTETVFSWPGIGSLGMTAVK
GMDYPVIMGITLFSALLLILGNLLADILYSIADPRIKSTR"
misc_feature 300622..301560
/locus_tag="PPE_00262"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 300991..301482
/locus_tag="PPE_00262"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(301015..301026,301030..301059,301066..301071,
301075..301077,301195..301200,301204..301206,
301210..301212,301219..301224,301228..301230,
301240..301245,301252..301254,301303..301305,
301345..301350,301357..301359,301378..301389,
301396..301401,301426..301431,301459..301464,
301471..301476,301480..301482)
/locus_tag="PPE_00262"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(301033..301077,301378..301395)
/locus_tag="PPE_00262"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(301075..301077,301180..301182,301396..301398,
301420..301422,301429..301431,301459..301461)
/locus_tag="PPE_00262"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(301255..301293,301309..301314,301324..301326)
/locus_tag="PPE_00262"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 301577..302422
/locus_tag="PPE_00263"
/db_xref="GeneID:9773020"
CDS 301577..302422
/locus_tag="PPE_00263"
/note="COGMatches:COG1173; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_003868683.1"
/db_xref="GI:308067078"
/db_xref="GeneID:9773020"
/translation="MNRSKWRNIGIELMTSKMGAVALILLIVFSLGAIFAFLSPQDPN
KLNVLERLQPPGAAHWFGTDDYGRDYFTRALYGGRVSLLVGFASMIIATSIGAVVGIV
SGYFGGWIDNLLMRVLELIMSIPSFLVILLLSVFLKPGVGNIIVIIALLMWMNIARVV
RAETMTLREREYVLYAKASGQSTFGIIMKHIVPNLIPVIIVGATNNIASAIMMESSLS
FLGFGVQLPNATWGSMLNNAQGYIAQAPYMALFPGLLILLTVLSFNVLGDVLRVGFEP
KLVKR"
misc_feature 301577..302419
/locus_tag="PPE_00263"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:31366"
misc_feature 301580..301744
/locus_tag="PPE_00263"
/note="N-terminal TM domain of oligopeptide transport
permease C; Region: OppC_N; pfam12911"
/db_xref="CDD:205142"
misc_feature 301811..302356
/locus_tag="PPE_00263"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(301856..301861,301868..301873,301886..301888,
301916..301927,301931..301960,301967..301972,
301976..301978,302027..302032,302036..302038,
302042..302044,302051..302056,302060..302062,
302072..302077,302084..302086,302135..302137,
302177..302182,302189..302191,302210..302221,
302228..302233,302273..302278,302306..302311,
302318..302323,302327..302332,302339..302344,
302351..302356)
/locus_tag="PPE_00263"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(301934..301978,302210..302227)
/locus_tag="PPE_00263"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(301976..301978,302012..302014,302228..302230,
302267..302269,302276..302278,302306..302308)
/locus_tag="PPE_00263"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(302087..302125,302141..302146,302156..302158)
/locus_tag="PPE_00263"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 302498..303535
/locus_tag="PPE_00264"
/db_xref="GeneID:9773021"
CDS 302498..303535
/locus_tag="PPE_00264"
/note="COGMatches:COG0444; PfamMatches:PF00005;
PrositeMatches:PS00211, PS50893; go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter ATP-binding protein"
/protein_id="YP_003868684.1"
/db_xref="GI:308067079"
/db_xref="GeneID:9773021"
/translation="MTEHLLSVEQLEVSFFTREGENQAVRGVSFHIDAGETVGIVGES
GSGKSVTAKAIMSMIAPPGKRLNGDIRYRGQSLTALTEKQWRKIRGNQIAMVFQDPMT
SLNPVKKVGYHLVEVIRRHRGLNKEAATQAAVELLRQVGITEPERRMNQYPHQFSGGM
RQRVMIAMALSCSPELLIADEPTTALDVTIQAQILELLKTLKQQSDMSIALITHDLGV
VAQVCSRVIVMYGGMVMEEGRVDDIFYRPGHPYTQGLLRSVPQRTNGFRERLVPIEGT
PPDLLNPPSGCPFMERCPHAFARCVERPPMVELRPDQRAACWLNEPDAVPAGVYETPE
AGHVEGGDNGE"
misc_feature 302510..303460
/locus_tag="PPE_00264"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppD; COG0444"
/db_xref="CDD:30793"
misc_feature 302510..303211
/locus_tag="PPE_00264"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 302621..302644
/locus_tag="PPE_00264"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(302630..302635,302639..302647,302789..302791,
303035..303040,303137..303139)
/locus_tag="PPE_00264"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 302780..302791
/locus_tag="PPE_00264"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 302963..302992
/locus_tag="PPE_00264"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 303023..303040
/locus_tag="PPE_00264"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 303047..303058
/locus_tag="PPE_00264"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 303125..303145
/locus_tag="PPE_00264"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 303197..303454
/locus_tag="PPE_00264"
/note="oligopeptide/dipeptide ABC transporter, ATP-binding
protein, C-terminal domain; Region: oligo_HPY; TIGR01727"
/db_xref="CDD:211684"
gene 303528..304490
/locus_tag="PPE_00265"
/db_xref="GeneID:9773022"
CDS 303528..304490
/locus_tag="PPE_00265"
/note="COGMatches:COG4608; PfamMatches:PF00005;
PrositeMatches:PS00211, PS50893; go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter ATP-binding protein"
/protein_id="YP_003868685.1"
/db_xref="GI:308067080"
/db_xref="GeneID:9773022"
/translation="MSEANDVLGEHQPLVEVHQLKKHFVTAKDLLGRSSEVLKAVDGV
SFQIKRGETFGLVGESGSGKSTVGRCLTRLYDYTEGTVRFDGQDISKLNDKQLKPLRR
RIQSIFQDPYSSLNPGMNVLDLIGEPMDIHRLHQGSERKDAVVALLEKVGLKREHLYR
YSHEFSGGQRQRISIARALSVNPEFIVCDEPISALDVSIQAQVINTLEDLQQEFGLTY
LFIAHDLSMVRHISDRIGVMYHGRLVEVADADELYEQPAHPYTQALLSSIPMPDPRAV
GEREGLEGGLAQPDGSVVWDKDNNSATELREISPGHYVAYPVNR"
misc_feature 303567..304472
/locus_tag="PPE_00265"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppD; COG0444"
/db_xref="CDD:30793"
misc_feature 303567..304268
/locus_tag="PPE_00265"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 303699..303722
/locus_tag="PPE_00265"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(303708..303713,303717..303725,303852..303854,
304092..304097,304194..304196)
/locus_tag="PPE_00265"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 303843..303854
/locus_tag="PPE_00265"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 304020..304049
/locus_tag="PPE_00265"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 304080..304097
/locus_tag="PPE_00265"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 304104..304115
/locus_tag="PPE_00265"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 304182..304202
/locus_tag="PPE_00265"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 304251..304472
/locus_tag="PPE_00265"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene 304540..304998
/locus_tag="PPE_00266"
/db_xref="GeneID:9773023"
CDS 304540..304998
/locus_tag="PPE_00266"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868686.1"
/db_xref="GI:308067081"
/db_xref="GeneID:9773023"
/translation="MTESTTKRVRISQWDALLLESLRSLGWSQEELIRRVQQNELPTD
GPSDFDYTELVTGLASQEPEVFVSAVTNGYQIKYNTIRGIRSWIAVAFGREPELSLEE
GSEAVTSKLTKAEYDRLERVLSLGWFIQEVRPAAGETSGLYRIVPAAQTN"
gene complement(305068..305682)
/locus_tag="PPE_00267"
/db_xref="GeneID:9773024"
CDS complement(305068..305682)
/locus_tag="PPE_00267"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868687.1"
/db_xref="GI:308067082"
/db_xref="GeneID:9773024"
/translation="MNDSDSKAFPSKTAGSVHQSLLAVGTMGEFLILIFTLVYIYAND
FYYDHLYELEQKFTVFSFVLYYMCFVTYLIWLVQVHKAIRQKHSDYPIRTVGAIARMI
PFINLWGFSNTFTHIYRYFALHPELERKARYIQKMIVPLYFVWFGVGIINRILILHFS
HMESMSMLLGAIMQTTRMAFFYCMTRVIHNSLVMLNKKDEEGLH"
gene complement(305696..306598)
/locus_tag="PPE_00268"
/db_xref="GeneID:9773025"
CDS complement(305696..306598)
/locus_tag="PPE_00268"
/note="COGMatches:COG3480"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868688.1"
/db_xref="GI:308067083"
/db_xref="GeneID:9773025"
/translation="MVKNVTFLIISTDDIRMRKDGKVVNEVPSRNPYLLKKIFGINKE
RILIFALLLIPAIAAFIGTRPMPAQYILQGEMHPVKDLGVQGSVFFASVQTGIANNLL
ERWNVYSSENVSGGAITFEPLAPDKVDSYLKDLTETDTIKYSAMQAVHAATELSVDSD
TAEATATFSNLSKLEDARYAELLTHLQDLSGNSLGLMTGIGLYEEANNIDFSDGGRHK
IAGSGTMEEYGDVGSVGGLEQKLLGAEAAKVDLFFVPADYEWYGEEGNEAEAARVQKE
HGLKLRIIPVETLEDAIVYLKQLD"
misc_feature complement(305726..>305953)
/locus_tag="PPE_00268"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
cl12214"
/db_xref="CDD:209472"
gene 306635..307069
/locus_tag="PPE_00269"
/db_xref="GeneID:9773026"
CDS 306635..307069
/locus_tag="PPE_00269"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868689.1"
/db_xref="GI:308067084"
/db_xref="GeneID:9773026"
/translation="MVNEEKGSLNLMSEQEIHVGERGGGTIAAELNAAPPRPQRIVLT
LVAGFILLILGLFLSLITGIFPISYAEVWEVLFSSNPNPMLVEVVYHTRMPFALDMLL
LGGCLAVSGTLLQLRTANRFAFPKQLSPLYIPFAIVLTAVTV"
misc_feature 306830..>307021
/locus_tag="PPE_00269"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cl00462"
/db_xref="CDD:207058"
gene 307103..307336
/locus_tag="PPE_00270"
/db_xref="GeneID:9773027"
CDS 307103..307336
/locus_tag="PPE_00270"
/codon_start=1
/transl_table=11
/product="transporter permease"
/protein_id="YP_003868690.1"
/db_xref="GI:308067085"
/db_xref="GeneID:9773027"
/translation="MPYFMRCMIGNRSRLLILGSVFWGGGLLMLAKVISAKINEPVGF
PVTPVLACIGIPFLIYMVWIEWKRSSLLESSRF"
misc_feature <307103..307291
/locus_tag="PPE_00270"
/note="Transmembrane subunit (TM), of Periplasmic Binding
Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters involved in the uptake of siderophores, heme,
vitamin B12, or the divalent cations Mg2+ and Zn2+.
PBP-dependent ABC transporters consist of...; Region:
TM_ABC_iron-siderophores_like; cl00462"
/db_xref="CDD:207058"
gene 307456..308013
/locus_tag="PPE_00271"
/db_xref="GeneID:9773028"
CDS 307456..308013
/locus_tag="PPE_00271"
/note="COGMatches:COG0454; PfamMatches:PF00583;
go_fucntion: N-acetyltransferase activity (GO:0008080)"
/codon_start=1
/transl_table=11
/product="histone acetyltransferase"
/protein_id="YP_003868691.1"
/db_xref="GI:308067086"
/db_xref="GeneID:9773028"
/translation="MTSMTIVESSVKPGLMAFQASTEDQAEVQELILKTARWLHSKGS
TQWGRLLKGKDDHNLDGAIARGEVVIFRASEDHGLAGAVILQQQPSAWDRNLWGLDET
DSEGGTSVYLHRLVVDRDSTGKGLGRELMQWIEQGIHFTGKDRIRLDCIAGNDKLSEF
YRQCGYTYIGETNGYNIFEKMLIKL"
misc_feature <307762..307902
/locus_tag="PPE_00271"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(307798..307806,307834..307839)
/locus_tag="PPE_00271"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 308279..309565
/locus_tag="PPE_00272"
/db_xref="GeneID:9773029"
CDS 308279..309565
/locus_tag="PPE_00272"
/note="COGMatches:COG1653; PfamMatches:PF01547;
PrositeMatches:PS00013; go_process: transport
(GO:0006810)"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter periplasmic protein"
/protein_id="YP_003868692.1"
/db_xref="GI:308067087"
/db_xref="GeneID:9773029"
/translation="MNWIKIGFFLSVLFLLATACSTSPKIENTEGQKVRLTMQAWGNP
AEVKVYQRALDAFEKENPNIEVKLVPVPGDQYEQKLLTQLQGSRGPDVFYSYESTIAR
LIGAKQVQPLGEFLKSDASDVKAEDFPEGLWGPAKRDGEIYGVTPDSNPMVMYYNKKV
FKEAGVKTPQEYYDEGKWNWDAFEEVTSKLKAAGKQGYIAENWWAHWYSWVWSNGGQI
FDEQGRYVLDHNEKGKEAFSFMYDMVKKGNAVYLGSLPKGQGADAMFMSNQVGMLAAG
RWLEPLFRQNKSLDFDYIYWPSNTGKNEPVAIPVAYVAVNKNSPHVQEAMKLAAFYVS
VKGQEARLVEGGNAMGTLAAADESIMKKATIEHSSYLTEGRNIGHAHGSALAYDAQVP
GLNSDITETIDLMFLGKQDAAATIEKLNQIISKAVK"
misc_feature 308279..309562
/locus_tag="PPE_00272"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
misc_feature 308399..309295
/locus_tag="PPE_00272"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:201851"
gene 309580..310476
/locus_tag="PPE_00273"
/db_xref="GeneID:9773030"
CDS 309580..310476
/locus_tag="PPE_00273"
/note="COGMatches:COG1175; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_003868693.1"
/db_xref="GI:308067088"
/db_xref="GeneID:9773030"
/translation="MTGEEGDKMQKKHQAVWGYLFIGPQFLGLLCFSLLPLLYALYLS
FVNWDGFGVPLFVGLDNFKGQLSDPDFWKALMNTMYYMVLVIPAGIILALLVAIVLNK
VKGKEIYRLFFFMPVVTSSVSVGVIWMWILNGEFGILNHLLRAIGITGPMWLTDTQWV
IPSIALLSIWLGLGYNMVIFLAGLQGISKSYYEAAEIDGASKFQQLRYIKLPLLSPTT
FFVTIMMVISSFQVFDQAFVMTNGGPAKASYTLVYHIYDQAFIDFTMGESAAAAMILF
GIILVFTLLQFKMQKRWVHYGD"
misc_feature 309880..310422
/locus_tag="PPE_00273"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(309904..309915,309919..309948,309955..309960,
309964..309966,310084..310089,310096..310098,
310102..310104,310111..310116,310120..310122,
310132..310137,310144..310146,310195..310197,
310237..310242,310249..310251,310270..310281,
310288..310293,310333..310338,310378..310383,
310390..310395,310399..310404,310411..310416)
/locus_tag="PPE_00273"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(309922..309966,310270..310287)
/locus_tag="PPE_00273"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(309964..309966,310069..310071,310288..310290,
310327..310329,310336..310338,310378..310380)
/locus_tag="PPE_00273"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(310147..310185,310201..310206,310216..310218)
/locus_tag="PPE_00273"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 310466..311296
/locus_tag="PPE_00274"
/db_xref="GeneID:9773031"
CDS 310466..311296
/locus_tag="PPE_00274"
/note="COGMatches:COG0395; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_003868694.1"
/db_xref="GI:308067089"
/db_xref="GeneID:9773031"
/translation="MEISSRGRVFLRHVLLAVGSLVMFFPFLWTVLSSLKDISQIFVV
PPQWIPDPFVWSNYPASLEAMPFVQAYMNSFYITVIIVTATLISASMAAYAFAKIRFP
GSNILFILFLATMMVPKQVTMIPLYLVMDRIGWLDTHWSLIVPGALFNAFAVFLLRQF
VMGIPRDLEEAAVMDGAGYIRIYWSVILPLIRPALAAIGIFTFLGAWNSFLDPLIYLN
TPEKFTVPLLLNNFKGLYTADWSLMMAGTTISVVPVLIVYIIAQKQIIEGITLTGIKG
"
misc_feature 310466..311290
/locus_tag="PPE_00274"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 310676..311230
/locus_tag="PPE_00274"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(310724..310729,310736..310741,310754..310756,
310784..310795,310799..310828,310835..310840,
310844..310846,310904..310909,310913..310915,
310919..310921,310928..310933,310937..310939,
310949..310954,310961..310963,311012..311014,
311054..311059,311066..311068,311087..311098,
311105..311110,311147..311152,311180..311185,
311192..311197,311201..311206,311213..311218,
311225..311230)
/locus_tag="PPE_00274"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(310802..310846,311087..311104)
/locus_tag="PPE_00274"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(310844..310846,310889..310891,311105..311107,
311141..311143,311150..311152,311180..311182)
/locus_tag="PPE_00274"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(310964..311002,311018..311023,311033..311035)
/locus_tag="PPE_00274"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(311307..312143)
/locus_tag="PPE_00275"
/db_xref="GeneID:9773032"
CDS complement(311307..312143)
/locus_tag="PPE_00275"
/note="COGMatches:COG4753; PfamMatches:PF02311, PF07883,
PF00165; PrositeMatches:PS00041, PS01124; go_process:
regulation of transcription, DNA-dependent (GO:0006355),
go_component: intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="chemotaxis protein CheY"
/protein_id="YP_003868695.1"
/db_xref="GI:308067090"
/db_xref="GeneID:9773032"
/translation="MIATPRFAIEQALRKVPFSMSADHVHQAHEIYYLLAGERYYYIN
QRVYALQKGDLIWISKHDFHRTSNKGSGSHERILINFDEEFAASSMTVSPSSDQNQLL
LPEKSFLLRPSAEEQCELEHLFRQMLDEYHQEHAYRQLYLQSLLLQLLIRIRRIQSAT
ADTIAPERSQKQQRVYSVIAYLHAHYDQNLSLDQLAEHFYISSTYLCRIFKQTTGFTL
VEYLQDVRVQQARAYLRETSWKVTSIAEKTGFDSIAHFGRVFKHLTGHTPLQYRKKYK
KE"
misc_feature complement(311928..312086)
/locus_tag="PPE_00275"
/note="Cupin domain; Region: Cupin_2; pfam07883"
/db_xref="CDD:203791"
misc_feature complement(311475..311600)
/locus_tag="PPE_00275"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature complement(311328..311579)
/locus_tag="PPE_00275"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(311325..311438)
/locus_tag="PPE_00275"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 312282..313568
/locus_tag="PPE_00276"
/db_xref="GeneID:9773033"
CDS 312282..313568
/locus_tag="PPE_00276"
/note="COGMatches:COG0673; PfamMatches:PF01408, PF02894;
go_process: metabolism (GO:0008152)"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="YP_003868696.1"
/db_xref="GI:308067091"
/db_xref="GeneID:9773033"
/translation="MAKIKYALVGTGGRAEFFYGEVVTVFKDTSELIAFCDVNQTRMD
YANQLLQKKYEHEPIPTYKAHEFDRMIAETKPDIVIVTTIDRVHHRYIIRAMELGCDV
ISEKPMTVDEDKCQDILDAIGRTGRKLRVTFNYRYAPHNTKIRELIMDGTLGEVLSVN
FEWLLNTQHGADYFRRWHRDKRNSGGLLVHKSTHHFDLMNFWLGSKPETVYAMGDLKF
YGRENAEQRGVTEFYQRAYGSKAAENDPFALHLDRNEHLKSMYLDAEHEDGYVRDQSV
FGDNISIEDTLSVMVKYQNKTVMNYSLNAYMPWEGFIIVFNGTKGRMEVRVSEQSYVN
SGGSKADEGALKEKTITIYPHFAAPYEVEVEEGVGGHGGGDPVMLRDIFDKPAEDRFH
RAASHIDGAWSILTGIAANRSMRTGQPVKVEELVRL"
misc_feature 312282..>312977
/locus_tag="PPE_00276"
/note="Predicted dehydrogenases and related proteins
[General function prediction only]; Region: MviM; COG0673"
/db_xref="CDD:31017"
misc_feature 312291..312680
/locus_tag="PPE_00276"
/note="Oxidoreductase family, NAD-binding Rossmann fold;
Region: GFO_IDH_MocA; pfam01408"
/db_xref="CDD:201778"
misc_feature 312714..313007
/locus_tag="PPE_00276"
/note="Oxidoreductase family, C-terminal alpha/beta
domain; Region: GFO_IDH_MocA_C; pfam02894"
/db_xref="CDD:202453"
gene complement(313680..314519)
/locus_tag="PPE_00277"
/db_xref="GeneID:9773034"
CDS complement(313680..314519)
/locus_tag="PPE_00277"
/EC_number="4.2.1.1"
/note="COGMatches:COG3338; PfamMatches:PF00194;
PrositeMatches:PS00013; go_process: one-carbon compound
metabolism (GO:0006730)"
/codon_start=1
/transl_table=11
/product="carbonic anhydrase"
/protein_id="YP_003868697.1"
/db_xref="GI:308067092"
/db_xref="GeneID:9773034"
/translation="MKKNWKGCLFSIFAIILVVSVTGCNSQPAISSTPSTSSSSATNA
HAAVQKGPHWSYEGDQGPEHWGELEKDFVACGNGHEQSPVNIEHTHLEASQTRQPLQV
HYTNTKASILNNGHTVQINVADASNNIMLDGTKFTLKQFHFHHPSEHQIDGKNAEMEL
HFVHQSDNGSTAVLGVLIQSGKENKAFNRIWSKLPKDNSQEAAALDKEINLAALLPKD
LHSVRYNGSLTTPPCTEHVNWTVLEQPIEMSADQINQFAAIFPDNHRPVQQLGTRELT
ADK"
misc_feature complement(313692..314363)
/locus_tag="PPE_00277"
/note="Carbonic anhydrase [Inorganic ion transport and
metabolism]; Region: Cah; COG3338"
/db_xref="CDD:33147"
misc_feature complement(313695..314339)
/locus_tag="PPE_00277"
/note="Carbonic anhydrase alpha, prokaryotic-like
subfamily. Carbonic anhydrases (CAs) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism: a nucleophilic attack of
a zinc-bound hydroxide ion on carbon...; Region:
alpha_CA_prokaryotic_like; cd03124"
/db_xref="CDD:28766"
misc_feature complement(order(313833..313835,314037..314039,
314076..314078,314088..314090,314094..314096,
314100..314102,314172..314174))
/locus_tag="PPE_00277"
/note="active site"
/db_xref="CDD:28766"
misc_feature complement(order(314037..314039,314088..314090,
314094..314096))
/locus_tag="PPE_00277"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:28766"
gene 314737..315753
/locus_tag="PPE_00278"
/db_xref="GeneID:9773035"
CDS 314737..315753
/locus_tag="PPE_00278"
/EC_number="1.1.1.1"
/note="COGMatches:COG1064; PfamMatches:PF00107;
PrositeMatches:PS00059, PS00065"
/codon_start=1
/transl_table=11
/product="alcohol dehydrogenase I"
/protein_id="YP_003868698.1"
/db_xref="GI:308067093"
/db_xref="GeneID:9773035"
/translation="MKAAIVTKDKKVSVEEKPLRSLKHGEALVQVEYCGVCHTDLHVK
NADFGDVTGRVLGHEGIGKVIELGEGVTSLKIGDRVSIAWMFQSCGHCEYCLTGRETL
CREVKNAGYTVDGAMAEQCIVTADYAVKVPDSLDPAAASSVTCAGVTTYKAVKVSEIK
PGQWIGIFGIGGLGNLAVQYAKNVFNAKVVAFDISDEKLELAKKIGADYIVNSMKEDP
VARAKELTNGAGLDATVVTAVAKTPFNQAIDVVKAGARVVAVGLPTDKMDLDIPRLVL
DGIQVIGSLVGTREDLKEAFQFAAEGKVVPLVQKRPLEDINEIFEEMEQGKIQGRMVI
DFTK"
misc_feature 314737..315750
/locus_tag="PPE_00278"
/note="ethanol-active dehydrogenase/acetaldehyde-active
reductase; Provisional; Region: PRK09422"
/db_xref="CDD:181842"
misc_feature 314737..315744
/locus_tag="PPE_00278"
/note="Cinnamyl alcohol dehydrogenases (CAD); Region:
CAD3; cd08297"
/db_xref="CDD:176257"
misc_feature order(314845..314853,314860..314862,315169..315171,
315181..315183,315238..315240,315244..315249,
315253..315255,315310..315315,315328..315330,
315445..315456,315463..315465,315514..315522,
315586..315594,315727..315729)
/locus_tag="PPE_00278"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:176257"
misc_feature order(314845..314847,314851..314853,314878..314880,
314908..314910,314986..314988,315169..315171,
315520..315522,315592..315594)
/locus_tag="PPE_00278"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176257"
misc_feature order(314845..314847,314908..314910,315169..315171)
/locus_tag="PPE_00278"
/note="catalytic Zn binding site [ion binding]; other
site"
/db_xref="CDD:176257"
misc_feature order(314878..314880,315007..315009,315013..315018,
315040..315048,315214..315219,315283..315291,
315298..315300,315334..315336,315343..315348,
315466..315468,315490..315492,315496..315498,
315511..315513,315517..315522,315547..315552,
315565..315591,315601..315606,315616..315618,
315628..315630,315637..315639)
/locus_tag="PPE_00278"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:176257"
misc_feature order(315001..315003,315010..315012,315019..315021,
315043..315045)
/locus_tag="PPE_00278"
/note="structural Zn binding site [ion binding]; other
site"
/db_xref="CDD:176257"
gene complement(315833..316198)
/locus_tag="PPE_00279"
/db_xref="GeneID:9773036"
CDS complement(315833..316198)
/locus_tag="PPE_00279"
/note="COGMatches:COG1733; PfamMatches:PF01638"
/codon_start=1
/transl_table=11
/product="transcriptional regulator ytcD"
/protein_id="YP_003868699.1"
/db_xref="GI:308067094"
/db_xref="GeneID:9773036"
/translation="MGKKKYNISVEATLEVIGGKWKCVILCHLTHGKMRTSELKRMMP
SITQKMLTQQLRELEEDGIVNRISYNQVPPKVEYELSEYGCSLKGILDSLCAWGERHI
IKEYGDKSAVLEDNILNKL"
misc_feature complement(order(316013..316015,316106..316108,
316115..316120,316127..316132,316139..316141,
316148..316150,316154..316159))
/locus_tag="PPE_00279"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:28974"
misc_feature complement(order(315965..315973,315986..315991,
316001..316003,316019..316024,316028..316033,
316040..316045,316049..316060,316088..316096,
316133..316141,316151..316156))
/locus_tag="PPE_00279"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature complement(315893..316153)
/locus_tag="PPE_00279"
/note="HxlR-like helix-turn-helix; Region: HxlR;
pfam01638"
/db_xref="CDD:201897"
misc_feature complement(order(316085..316087,316094..316096))
/locus_tag="PPE_00279"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
gene 316387..317583
/locus_tag="PPE_00280"
/db_xref="GeneID:9773037"
CDS 316387..317583
/locus_tag="PPE_00280"
/note="COGMatches:COG2814; PfamMatches:PF07690;
PrositeMatches:PS50850"
/codon_start=1
/transl_table=11
/product="arabinose efflux permease"
/protein_id="YP_003868700.1"
/db_xref="GI:308067095"
/db_xref="GeneID:9773037"
/translation="MSPESKRSIWPLLALAVSAFAIGTTEFISVGLLPLIAEDLHISV
TMSALTVTLYALGVTIGAPVLTSLTSSVPRKTLLMWIMIIFIAGNSLAAVSSGIALLL
IARVISAFAHGVFMSIGSTIAADLVPNDRRASAISIMFSGLTVATVTGVPLGTYIGQQ
WGWRAAFMGIVVVGVVALIANLILLPSTLRKGNKTPFREQVKLVTNGRLLLAFIITAL
GYGGTFVVFTYLSPLLHDITGFQQSTVTFILLLYGIAIAIGNVIGGKAANRKPLSALF
YMFLIQAVILFLLLFTAPFKTAGLITIFFMGLLAFMNVPGLQVYVVMLAERFAPKAVD
VASAVNIAAFNAGIAIGAYVGGIVTDSLGLIHTAWIGSIMVFVAVLLTGWSRMLEKRD
TTTITG"
misc_feature 316387..317568
/locus_tag="PPE_00280"
/note="Arabinose efflux permease [Carbohydrate transport
and metabolism]; Region: AraJ; COG2814"
/db_xref="CDD:32643"
misc_feature 316420..>316890
/locus_tag="PPE_00280"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(316462..316464,316471..316479,316483..316488,
316537..316539,316546..316551,316558..316560,
316570..316575,316579..316584,316720..316725,
316732..316737,316744..316749,316756..316758,
316792..316797,316804..316809,316825..316827)
/locus_tag="PPE_00280"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 317615..318457
/locus_tag="PPE_00281"
/db_xref="GeneID:9773038"
CDS 317615..318457
/locus_tag="PPE_00281"
/EC_number="1.1.-.-"
/note="COGMatches:COG0656; PfamMatches:PF00248;
PrositeMatches:PS00798, PS00062, PS00063; go_fucntion:
oxidoreductase activity (GO:0016491)"
/codon_start=1
/transl_table=11
/product="reductase"
/protein_id="YP_003868701.1"
/db_xref="GI:308067096"
/db_xref="GeneID:9773038"
/translation="MTQNLQSTTLLNNGVHMPWFGIGVFKVEEGSELVDAIKAAVKHG
YRSIDTAAIYANESSVGQAIQEALQENNLSREDLFVTSKVWNADLGYEETRAAYEASL
NKLGLEYLDLYLIHWPVQGKYKEAWRALESLYKEGRTKAIGVSNFQIHHLEDLMKDAE
IKPMINQVEFHPQLTQAELLQFCQKNDIQMEAWSPLMQGQLLDHPVLQDIATKYGKSV
AQVILRWDVQQGVVTIPKSTKAHRIVENADIFDFELTREDMDRIQALNADLRVGPDPD
NFDF"
misc_feature 317639..318409
/locus_tag="PPE_00281"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature order(317681..317689,317759..317761,317774..317776,
317861..317863,317960..317965,318047..318052,
318113..318115,318191..318208,318269..318271,
318314..318325,318338..318340,318347..318352)
/locus_tag="PPE_00281"
/note="active site"
/db_xref="CDD:119408"
misc_feature 317705..318415
/locus_tag="PPE_00281"
/note="Aldo/keto reductase family; Region: Aldo_ket_red;
pfam00248"
/db_xref="CDD:201112"
misc_feature order(317759..317761,317774..317776,317861..317863,
317960..317962)
/locus_tag="PPE_00281"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene 318572..319648
/locus_tag="PPE_00282"
/db_xref="GeneID:9773039"
CDS 318572..319648
/locus_tag="PPE_00282"
/note="COGMatches:COG1609; PfamMatches:PF00356, PF00532;
PrositeMatches:PS00356, PS50932; go_component:
intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="sucrose operon repressor (Scr operon regulatory
protein)"
/protein_id="YP_003868702.1"
/db_xref="GI:308067097"
/db_xref="GeneID:9773039"
/translation="MKRDVLEAYEYEKSLGDFMNKTIADIAQMAGVSKSTVSRFLNGG
SVSLDTKRKIEKVVKATGYVPNAFAQSLKAKRTNIIGTVVPRLDSFATSHTLMGIDEE
LRSQHYQMLISNTSQDVQREIEAIYELGRQKISGIILLAAQITDDHLTAIRDIGIPVL
LVGQQHEQLHSLIHDDYRAGYDIGTYVLSQGHREIAYVGVTEKDVAVGVQRKEGFKQA
VRDALPAESHTDDAMRAAGYDIRYYETGFKMSDARIAASAILDNFKPSLMVCATDNIA
LGVINAAYSRGIVIPSDLSVTGFGGYDITEVIHPALTTVQYPYMEAGRVAAQNIMRLV
EHKSVEKVTVMNYSLIERESVDKR"
misc_feature 318635..319645
/locus_tag="PPE_00282"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature 318641..318793
/locus_tag="PPE_00282"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature order(318641..318643,318665..318679,318683..318688,
318695..318697,318707..318712,318719..318721,
318758..318760,318767..318769,318776..318781,
318785..318790)
/locus_tag="PPE_00282"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature 318758..318787
/locus_tag="PPE_00282"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature 318806..319621
/locus_tag="PPE_00282"
/note="Ligand-binding domain of DNA transcription
repressor specific for trehalose (TreR) which is a member
of the LacI-GalR family of bacterial transcription
regulators; Region: PBP1_TreR_like; cd01542"
/db_xref="CDD:107255"
misc_feature order(318806..318808,318833..318835,318848..318850,
318869..318871,318896..318898,318902..318907,
318911..318913,318944..318946,318962..318970,
319412..319414,319490..319495)
/locus_tag="PPE_00282"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:107255"
misc_feature order(318842..318847,318989..318991,319202..319204,
319385..319387,319391..319393,319526..319528)
/locus_tag="PPE_00282"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107255"
gene 319831..321306
/locus_tag="PPE_00283"
/db_xref="GeneID:9773040"
CDS 319831..321306
/locus_tag="PPE_00283"
/EC_number="3.2.1.26"
/note="COGMatches:COG1621; PfamMatches:PF00251;
PrositeMatches:PS00609"
/codon_start=1
/transl_table=11
/product="sucrose-6-phosphate hydrolase"
/protein_id="YP_003868703.1"
/db_xref="GI:308067098"
/db_xref="GeneID:9773040"
/translation="MKMTREQKYRMIEQAEPGEIAGLEEKVEQCHWRQAFHIQPPTGL
LNDPNGFSYYQGEYHLFYQWFPLGADHGMKYWYHLKSRDLVTWNSAGIGIAPGDYFDS
HGAYSGSALEHEGKLHMMYTGNTRDENWIRHPYQCMAVMDENGHITKWEHPVIANVPE
GYTDHFRDPKLWKDGDSFYCVIGAQRTNLTGCAVLYRSTDLRTWEFEGELSTGLESFG
YMWECPDYFELNEAGVLIFSPQGLEPSGDENHNIYQSGYVIGKPLDTGTRRLEHGAFH
ELDRGFDFYAPQTMIDPQGRRIMVAWMGLPDIEYPTDPNGWAHCLTLPRELTLHEGKL
LQRPIPELTTLRRNREDRVADTLFSESKTYEGFTGTAYELICEVDLLSAKMFGIEFRA
SETEKTVIKYDAISRKLVLDRSQSGEPVATSYGEVRQCSWDKDHIKLHLFVDTSSVEI
FVNDGEEVFTSRIFPHPESDEIRFFADKGEALFQAVKWDFT"
misc_feature 319897..321225
/locus_tag="PPE_00283"
/note="sucrose-6-phosphate hydrolase; Region: scrB_fam;
TIGR01322"
/db_xref="CDD:162301"
misc_feature 319957..320853
/locus_tag="PPE_00283"
/note="Glycosyl hydrolase family 32, beta-fructosidases;
Region: GH32_B_Fructosidase; cd08996"
/db_xref="CDD:185737"
misc_feature order(319966..319971,320017..320019,320146..320151,
320329..320334,320494..320496)
/locus_tag="PPE_00283"
/note="substrate binding [chemical binding]; other site"
/db_xref="CDD:185737"
misc_feature order(319969..319971,320332..320334,320494..320496)
/locus_tag="PPE_00283"
/note="active site"
/db_xref="CDD:185737"
misc_feature 320962..321195
/locus_tag="PPE_00283"
/note="Glycosyl hydrolases family 32 C terminal; Region:
Glyco_hydro_32C; pfam08244"
/db_xref="CDD:203887"
gene 321374..322792
/locus_tag="PPE_00284"
/db_xref="GeneID:9773041"
CDS 321374..322792
/locus_tag="PPE_00284"
/EC_number="2.7.1.69"
/note="COGMatches:COG1263; PfamMatches:PF00367, PF02378;
PrositeMatches:PS01035, PS51098, PS51103, PS00133;
go_component: membrane (GO:0016020)"
/codon_start=1
/transl_table=11
/product="PTS system sucrose-specific transporter subunit
IIBC"
/protein_id="YP_003868704.1"
/db_xref="GI:308067099"
/db_xref="GeneID:9773041"
/translation="MAENREIAKEVIQAIGGQENIASFAHCATRLRIMVHDKEKIDQK
KVEEIDKVKGAFFNSGQYQIIFGTGTVNRIFEEVEKLGVTGSSKEEVKSQAKKEGNVF
QRSIRTFGDVFVPIIPVLVATGLFMGLRGLLTQPQILALLGMTPQDISPNFLLYTQVL
TDTAFAFLPALVAWSAFRVFGGSPVLGIVLGLMLVNPALPNAYSVADGSAHPLTMFGF
IPVVGYQGSVLPAFFVGLIGAKLERALRKRVPEALDLILTPFLTLLIMITLGLFAIGP
IFHSLEEWVLHGTTFVLDLPFGIAGIVIGFLHQIIVVTGVHHIFNFLEIQLLEKNGVN
AFNAIITCAMAAQGAACLAVGLKTKNSKLKALALPSSLSAFLGITEPAIFGVNLRYMK
PFVMGLIGGAVGGFIASVFHLAATGMAVTVIPGTLLYMNHQLPLYILANLAAMVVAFV
LTWMFGYNDKMLEEVKTAGSSN"
misc_feature 321383..322738
/locus_tag="PPE_00284"
/note="PTS system, sucrose-specific IIBC component;
Region: PTS-II-BC-sucr; TIGR01996"
/db_xref="CDD:131051"
misc_feature 321389..321619
/locus_tag="PPE_00284"
/note="PTS_IIB, PTS system, glucose/sucrose specific IIB
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIB_glc; cd00212"
/db_xref="CDD:29267"
misc_feature 321449..321469
/locus_tag="PPE_00284"
/note="active site turn [active]"
/db_xref="CDD:29267"
misc_feature 321452..321454
/locus_tag="PPE_00284"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29267"
misc_feature 321656..322762
/locus_tag="PPE_00284"
/note="Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
transport and metabolism]; Region: PtsG; COG1263"
/db_xref="CDD:31455"
gene complement(322963..323751)
/locus_tag="PPE_00285"
/db_xref="GeneID:9773042"
CDS complement(322963..323751)
/locus_tag="PPE_00285"
/note="COGMatches:COG2207; PfamMatches:PF00165;
PrositeMatches:PS00041, PS01124; go_component:
intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_003868705.1"
/db_xref="GI:308067100"
/db_xref="GeneID:9773042"
/translation="MITLVDIRQDNGVDWYEKAGANSDNDDLLFILVTFGKCVYWVND
CKFILGKGETLLLPSHLDYYGKSIPTLFHTKYVIHCRKTCTNSTLPILNTDKPLLIKP
GCYDMLHERIKSMYYQWTEHPSYYTMMADCLLTEAMIYMNQEWDKGAISCDRERHVEH
MKQYIQNHYREKVTKEELGDAIRKTPNYAATLLREVTRQTISEHVHTQRIKTAIYMLT
ESRLTIREISEYVGYSDVSYFHRIFKRLTGCSPSEFLDERSSIV"
misc_feature complement(322987..323238)
/locus_tag="PPE_00285"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(322987..323100)
/locus_tag="PPE_00285"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 323931..325346
/gene="pyk1"
/locus_tag="PPE_00286"
/db_xref="GeneID:9773043"
CDS 323931..325346
/gene="pyk1"
/locus_tag="PPE_00286"
/EC_number="2.7.1.40"
/note="TIGRFAMsMatches:TIGR01064; COGMatches:COG0469;
PfamMatches:PF00224, PF02887; go_process: glycolysis
(GO:0006096)"
/codon_start=1
/transl_table=11
/product="pyruvate kinase"
/protein_id="YP_003868706.1"
/db_xref="GI:308067101"
/db_xref="GeneID:9773043"
/translation="MLKTKIICTMGPACDSIHLLKEMIQAGMTVARLNMAHGELEDHV
KRIENVRQAAKEMNTFIPVMMDIKGPEIRIGKLREASCLLKPGSQLILTTEEILGDEH
RISVNYPDMPKDIKPGDRILIDDGLVDLTVTSIEGTEMICNIVSGGILKPRKGVNLPG
IHTTLPGVTERDVKHIQFGVEQRVELIAASFVRKGDDIREIREILKGHHAEHVQIYSK
IENAEGMENLDDIIEASDGIMVARGDLGVEVPIQDVPVMQKEMIDKCNLVGKPVIVAT
HMLESMQVNPRPTRAEVSDVFNAVMQGADVVMLSGESAAGKYPVESVRTMAAVAARAE
SQFDYQEQFDKRRARQSTNITEVISQGAVSSSLELDAKAIITSTASGFTARMVSKYRP
KAPIIAVTPNNTVFAKICLLSGVFPIKGDKVATTDEMFESSIRNALNAGYIHKGDTVV
LSAGVPVAEAGTTNLIRVYQV"
misc_feature 323931..325343
/gene="pyk1"
/locus_tag="PPE_00286"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl09155"
/db_xref="CDD:208991"
misc_feature 323931..325313
/gene="pyk1"
/locus_tag="PPE_00286"
/note="pyruvate kinase; Provisional; Region: PRK05826"
/db_xref="CDD:180277"
misc_feature order(323937..323942,324108..324110,324114..324116,
324138..324149,324396..324401,324417..324419,
324426..324440,324483..324485,324507..324509,
324528..324530,324564..324566,324672..324674,
324726..324731,324741..324743,324837..324839,
324843..324845,324930..324932,324936..324941,
325095..325097,325101..325103,325107..325109,
325140..325142,325149..325154,325158..325160,
325164..325172)
/gene="pyk1"
/locus_tag="PPE_00286"
/note="domain interfaces; other site"
/db_xref="CDD:29370"
misc_feature order(324024..324026,324030..324032,324126..324128,
324501..324503,324582..324584,324588..324590,
324660..324662,324756..324758)
/gene="pyk1"
/locus_tag="PPE_00286"
/note="active site"
/db_xref="CDD:29370"
gene complement(325475..325873)
/locus_tag="PPE_00287"
/db_xref="GeneID:9773044"
CDS complement(325475..325873)
/locus_tag="PPE_00287"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868707.1"
/db_xref="GI:308067102"
/db_xref="GeneID:9773044"
/translation="MNRKRMLVICTLLLALSIGQSSTWGSRANAATLAPERAPQVQDN
EASKDDELLKTLGASSDEQLYDALYNGQTLADIAQSNKQDAQAVVDLQVAQLTEQLDQ
RLANKSITLEQYQAHKAELTQVVAKSVFGL"
gene complement(326189..326533)
/locus_tag="PPE_00288"
/db_xref="GeneID:9773045"
CDS complement(326189..326533)
/locus_tag="PPE_00288"
/note="COGMatches:COG3152"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868708.1"
/db_xref="GI:308067103"
/db_xref="GeneID:9773045"
/translation="MQWYLNGLKNYVGFQGRARRTEYWMFILFSVIVSFVISLIDSLV
GLSPILTYIYSLAVLLPSLAVLARRLHDTGRSGWWILIALIPLVGSIILIVFTCQDSQ
PGDNKYGKNPKL"
misc_feature complement(326195..326506)
/locus_tag="PPE_00288"
/note="Protein of unknown function (DUF805); Region:
DUF805; pfam05656"
/db_xref="CDD:203300"
gene 326926..329361
/locus_tag="PPE_00289"
/db_xref="GeneID:9773046"
CDS 326926..329361
/locus_tag="PPE_00289"
/note="COGMatches:COG3507"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868709.1"
/db_xref="GI:308067104"
/db_xref="GeneID:9773046"
/translation="MKQSFVRKVTAASLAGALLLPASLVGAEQTLNSDTDGIQNVGQT
SFQAQDLENFSIQSKKAVSFKETSVHDPSILKVKDTFYIFGSHLAAAKSKDLMNWDTI
ATGVANGNALIPNVKEELKEALDWAQTDTLWAADVIQLADGKFYMYYNACKGDSPRSA
MGLAVADKIEGPYKNKGIFLKSGMWDQPSEDGTIYDATKHPNAVDPDTFYDKNGKLWM
VYGSYSGGIFIMQMDEKTGKPLPGQGYGKKLTGGNHARMEGPYIQYSPQTDYYYLFLS
YGGLSADGGYNLRVARSKTPDGPFYDAEGNDMIKVKANPDKPLFDDASIEPYGVKLIG
NYLIPREIGDPGTGLGAGYVSPGHNSAYYDPKTKKHFVIFHSRFPGRGEQFEVRVHEM
FMNADGWPLVAPYRYSGDEDSLKKLSEKDVLGQYSYVNHGKEISANIKQAVNVSLDSG
GKLSGGVNGTWKLGTGNQLEITAEGTKYKGVFLRHRDPDTGAKTLAFTALSSKGVAVW
GSLKPDLKASKIVAAVQKDLSLGDTSNVLYNLTLPTQAAQDTTISWESTHPENISVTG
EVYRPEAGSQPVTVTLTATIKKDKATAKKNFTAIVPGQAQGPQLARYSWSEDQGTSVV
DSTYNQFDGKIYGGAAWDKDGKLGGALVLNGKDGYVQLPNTVTDAKDLTFSAWVNWKG
GAAWQRIFDFGNGQARHMFLTPSQGNGVLQFTIHEGTDQSLLSKSSLPLNQWTHVAVT
LEGNTGKLYVNGEEVAVNDGITFNPHELLTSEAYPGKSRFAADAYFNGSLDEVQLYNK
ALTAEEIKALAEL"
misc_feature 327112..328665
/locus_tag="PPE_00289"
/note="Beta-xylosidase [Carbohydrate transport and
metabolism]; Region: XynB; COG3507"
/db_xref="CDD:33310"
misc_feature 327130..328131
/locus_tag="PPE_00289"
/note="Glycosyl hydrolase family 43; Region: GH43_ABN_1;
cd08998"
/db_xref="CDD:185739"
misc_feature order(327130..327138,327181..327186,327322..327324,
327529..327531,327589..327594,327697..327699,
327757..327759,327781..327783,328078..328080)
/locus_tag="PPE_00289"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:185739"
misc_feature order(327136..327138,327538..327540,327697..327699)
/locus_tag="PPE_00289"
/note="active site"
/db_xref="CDD:185739"
misc_feature 328870..329343
/locus_tag="PPE_00289"
/note="Concanavalin A-like lectin/glucanases superfamily;
Region: Laminin_G_3; pfam13385"
/db_xref="CDD:205563"
gene 329749..329949
/locus_tag="PPE_00290"
/db_xref="GeneID:9773047"
CDS 329749..329949
/locus_tag="PPE_00290"
/note="COGMatches:COG1278; PfamMatches:PF00313;
PrositeMatches:PS00352; go_process: regulation of
transcription, DNA-dependent (GO:0006355)"
/codon_start=1
/transl_table=11
/product="Cold shock-like protein cspLB (CspB)"
/protein_id="YP_003868710.1"
/db_xref="GI:308067105"
/db_xref="GeneID:9773047"
/translation="MQTGTVKWFNAEKGFGFIEVEGGSDVFVHFSAIQGDGFKSLDEG
QRVEFNVVEGNRGPQAENVVKL"
misc_feature 329752..329943
/locus_tag="PPE_00290"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box protein; Region:
CSP_CDS; cd04458"
/db_xref="CDD:88424"
misc_feature order(329770..329772,329797..329799,329827..329829,
329914..329916)
/locus_tag="PPE_00290"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:88424"
misc_feature order(329788..329808,329824..329835)
/locus_tag="PPE_00290"
/note="RNA-binding motif; other site"
/db_xref="CDD:88424"
gene 330081..330296
/locus_tag="PPE_00291"
/db_xref="GeneID:9773048"
CDS 330081..330296
/locus_tag="PPE_00291"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868711.1"
/db_xref="GI:308067106"
/db_xref="GeneID:9773048"
/translation="MYNSRKKPMDEIPEEITTVWNCASDTCNGWMRDNFAFSVEPTCP
ICGSAMVKGEKKLAVLNNTSFNHTKQS"
misc_feature 330081..330260
/locus_tag="PPE_00291"
/note="Cold-inducible protein YdjO; Region: YdjO;
pfam14169"
/db_xref="CDD:206338"
gene complement(330402..331223)
/locus_tag="PPE_00292"
/db_xref="GeneID:9773049"
CDS complement(330402..331223)
/locus_tag="PPE_00292"
/EC_number="3.1.1.2"
/note="COGMatches:COG0596; PfamMatches:PF00561"
/codon_start=1
/transl_table=11
/product="arylesterase"
/protein_id="YP_003868712.1"
/db_xref="GI:308067107"
/db_xref="GeneID:9773049"
/translation="MGYYIEVERGVKLYVEDIGEGIPVLMVHGWPLDHRMYEYQAALL
PAYGYRCIQVDLRGFGKSDRPWHGYNYDRLADDLLAVMQALQLNQVRLIGFSMGGAIV
TRYMSRHRGFGVNQLILIGAATPRFTPTSDFPYGTPVTEVDKLIKQAYTDRPQLVTSF
GEMLFANPVSQSLRDWLRDQGFAATVHSMACTLYSLRDSDLRPDLPCIHVPTWILHGK
LDRVCPFPLAVQTQKGIAGSKLIPFERSGHGVFYEALPEFNSILLSILAPSSTHN"
misc_feature complement(330441..331154)
/locus_tag="PPE_00292"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
misc_feature complement(330975..>331124)
/locus_tag="PPE_00292"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 331411..331743
/locus_tag="PPE_00293"
/db_xref="GeneID:9773050"
CDS 331411..331743
/locus_tag="PPE_00293"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868713.1"
/db_xref="GI:308067108"
/db_xref="GeneID:9773050"
/translation="MTPSKTLKWITGGLELFLAIPVLGGLLVVNSAYTILFFMLIFHI
VTLVLSVTNRESYYGSILGIVTSVIGWIPIVGWLMHLISGIFLMITAAQQPRDQYRNR
NPYDDYRY"
gene complement(331794..332339)
/locus_tag="PPE_00294"
/db_xref="GeneID:9773051"
CDS complement(331794..332339)
/locus_tag="PPE_00294"
/note="COGMatches:COG0454; PfamMatches:PF00583;
go_fucntion: N-acetyltransferase activity (GO:0008080)"
/codon_start=1
/transl_table=11
/product="histone acetyltransferase"
/protein_id="YP_003868714.1"
/db_xref="GI:308067109"
/db_xref="GeneID:9773051"
/translation="MKINKQEFDIQGMSYTIRSAMIQDAKILSEIRLLIDGETENLDR
EKGEAFISTSGFEQLIESDTENNRNLFLVAVVHDKIVGFSRCEGHVLSRFSHKVEFGV
CVLKDFWGYGIGTNLLKKSISWADSNGIKKITLQVLETNDKAVELYKKHGFEIEGLLK
NDKILSDGKYHNTIIMGRFHK"
misc_feature complement(331803..332300)
/locus_tag="PPE_00294"
/note="Sortase and related acyltransferases [Cell envelope
biogenesis, outer membrane]; Region: COG1247"
/db_xref="CDD:31440"
misc_feature complement(331935..332129)
/locus_tag="PPE_00294"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature complement(order(331995..332000,332028..332036))
/locus_tag="PPE_00294"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(332531..333109)
/locus_tag="PPE_00295"
/db_xref="GeneID:9773052"
CDS complement(332531..333109)
/locus_tag="PPE_00295"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868715.1"
/db_xref="GI:308067110"
/db_xref="GeneID:9773052"
/translation="MKMKSTQKAILAGTMALAFLGGGALYSTSAAHAASTTPEKAPIA
DKAQAPKGIPGDANGPKIAGGNYAENKALLKLLKLSSSQLDTQLKAGKSLATIAKAQG
VSVNSVIDVMVSDMKAKLAAEKQNGKITATEYNQRVSNLKKMMTDMVNGVKPSKPPVD
DGKADAGKAPAQGDAAKAPAKTNAAKASAKQK"
gene 333317..333730
/locus_tag="PPE_00296"
/db_xref="GeneID:9773053"
CDS 333317..333730
/locus_tag="PPE_00296"
/note="COGMatches:COG1725; PfamMatches:PF00392;
PrositeMatches:PS50949; go_component: intracellular
(GO:0005622)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_003868716.1"
/db_xref="GI:308067111"
/db_xref="GeneID:9773053"
/translation="MEEQRVGSFQFLIDFSQPLYEQILNQVRSSIAKGEIEMGSKMPS
VRDLAQELRMNPNTVMRAYQELERDGLTEKRRGLGTYVTSSSERIASFREQLAITYID
QFLGQMSSLGLSWEDVQQYIRSKQDGNDEEGGEGA"
misc_feature 333344..333709
/locus_tag="PPE_00296"
/note="Predicted transcriptional regulators
[Transcription]; Region: COG1725"
/db_xref="CDD:31911"
misc_feature 333368..333565
/locus_tag="PPE_00296"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(333368..333370,333374..333376,333443..333445,
333449..333454,333476..333490,333494..333499,
333506..333508,333536..333541,333545..333556)
/locus_tag="PPE_00296"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
gene 333727..334440
/locus_tag="PPE_00297"
/db_xref="GeneID:9773054"
CDS 333727..334440
/locus_tag="PPE_00297"
/note="COGMatches:COG1131; PfamMatches:PF00005;
PrositeMatches:PS50893; go_fucntion: ATPase activity
(GO:0016887)"
/codon_start=1
/transl_table=11
/product="multidrug ABC transporter ATPase"
/protein_id="YP_003868717.1"
/db_xref="GI:308067112"
/db_xref="GeneID:9773054"
/translation="MTESIVVASHLTKQYESKKALDHLDVVIPAGRIVGVLGPNGCGK
SSFFRAITGLIRPDGGELQVLGQKPGWETNRGISYLPDRARWYPNHTVQQTLEWGESF
LPGFHIKDAYKLADHMDVELELKMAGLSRGQEARVLLILCLAREVPLMILDEPFAGID
VLSREAIVAGIIDYLEGRQQSILISTHDIQEVEGLFDYTVMMDRGRVIWSGDSDDLRA
EHGSLNQVFRNLYKKEWKA"
misc_feature 333727..334413
/locus_tag="PPE_00297"
/note="ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism]; Region: ZnuC;
COG1121"
/db_xref="CDD:31318"
misc_feature 333742..334347
/locus_tag="PPE_00297"
/note="This family of ATP-binding proteins belongs to a
multisubunit transporter involved in drug resistance (BcrA
and DrrA), nodulation, lipid transport, and lantibiotic
immunity. In bacteria and archaea, these transporters
usually include an ATP-binding...; Region:
ABC_DR_subfamily_A; cd03230"
/db_xref="CDD:72989"
misc_feature 333838..333861
/locus_tag="PPE_00297"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72989"
misc_feature order(333847..333852,333856..333864,333970..333972,
334183..334188,334285..334287)
/locus_tag="PPE_00297"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72989"
misc_feature 333961..333972
/locus_tag="PPE_00297"
/note="Q-loop/lid; other site"
/db_xref="CDD:72989"
misc_feature 334111..334140
/locus_tag="PPE_00297"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72989"
misc_feature 334171..334188
/locus_tag="PPE_00297"
/note="Walker B; other site"
/db_xref="CDD:72989"
misc_feature 334195..334206
/locus_tag="PPE_00297"
/note="D-loop; other site"
/db_xref="CDD:72989"
misc_feature 334273..334293
/locus_tag="PPE_00297"
/note="H-loop/switch region; other site"
/db_xref="CDD:72989"
gene 334437..335204
/locus_tag="PPE_00298"
/db_xref="GeneID:9773055"
CDS 334437..335204
/locus_tag="PPE_00298"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868718.1"
/db_xref="GI:308067113"
/db_xref="GeneID:9773055"
/translation="MNSSGLFKDLIRHEFRNKGSWRKQSRNRLPRSWRLVYFSLFLIV
AFVISLYFAFHNQLELTRLWYVTLGLPYMIIFMGVGSLRREWENDTYGWWLTLPYPRM
WLISAKWIAAILQAVVVTLSLFVVGSLYALFISSTIQPYTFADAASFIIAGLNWFVMI
IAFTPLVIALGLLTASTKYSTLRPISPILWILLMGGGSVFYWSGDQGLYEQFDHVQTG
QWFSFTWHFPIAVLISWVAAYVLIRLSTYLLEKKLSI"
misc_feature 334497..>335042
/locus_tag="PPE_00298"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:213123"
gene 335245..335730
/locus_tag="PPE_00299"
/db_xref="GeneID:9773056"
CDS 335245..335730
/locus_tag="PPE_00299"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868719.1"
/db_xref="GI:308067114"
/db_xref="GeneID:9773056"
/translation="MTTIFIYALLAVLAGLMIWFRTKRRGGPVKGNGIRILLPLFIAF
PLMMMSVYQLMHIPGQTYAPPAFWELLIAGLLGALFGYVILLHTAYERREDGLIYPKP
NQYFKYIIIAIILIRVVLTQYLSSLGTSEISMLAITMALVYISIWRIGSFIKFRRTLS
V"
misc_feature 335245..335715
/locus_tag="PPE_00299"
/note="Protein of unknown function (DUF1453); Region:
DUF1453; cl02009"
/db_xref="CDD:154703"
gene complement(336323..336592)
/locus_tag="PPE_00300"
/db_xref="GeneID:9773057"
CDS complement(336323..336592)
/locus_tag="PPE_00300"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868720.1"
/db_xref="GI:308067115"
/db_xref="GeneID:9773057"
/translation="MIRTCFNDRTGVLAARTNPLNDMCFYLPVDPPRSASLFVSSGGS
SMNPTVILAIRDTSQLIKNVSMIRFVSSVILGYAQPFLSGIESGC"
gene 336809..337813
/locus_tag="PPE_00301"
/db_xref="GeneID:9773058"
CDS 336809..337813
/locus_tag="PPE_00301"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868721.1"
/db_xref="GI:308067116"
/db_xref="GeneID:9773058"
/translation="MKKKIGFVLASMVVGMSLISETSNAYGLNGITAGKFSVEEKPTY
KFTITSAALKKDGGIVATGHTSNIRAWYNSYDENGRVFWSSQSEVLVEPGTTIVLSDG
STLSSSELGKWEIKDESGSTVQTGKWDMGGGVYKIKQLKNGKILFAGSRGAYQIFEPD
MTPFRSGMWSANGPIYDAEEMDNGNILLVGSLGNWSVINNEGKGLKSGRYKTSHITSV
ARLSDGNLIAVTSPGSYILFNQEGTIIGDGLVSGKNVVSNLLSVTSFPGNHAVVRDGS
KVHILKIENNTAENVYTGKTNVVKGEIDDKTTVKISDNKIFFGGSNGIFQIMEVDLTP
"
gene 338064..339284
/locus_tag="PPE_00302"
/db_xref="GeneID:9773059"
CDS 338064..339284
/locus_tag="PPE_00302"
/note="COGMatches:COG4922; PfamMatches:PF07833"
/codon_start=1
/transl_table=11
/product="SnoaL-like polyketide cyclase"
/protein_id="YP_003868722.1"
/db_xref="GI:308067117"
/db_xref="GeneID:9773059"
/translation="MKKHTVTAALAGLLVLSSAVPALAAEVKPTTGIQVWIDGKKEAY
KIAPIVRNKQVLIPLRQLASSLGIPMDAKHITFNTARQSTTIRYDQATVVLVSGSPEA
IINGIKVPLSTSTILTKQGVTYVPVDVVKEAWGKQVIWDPASQTVQIGVSNKDKVIEI
VKSFETGDTKAAEAWISKDQYIQHNPSFASGRDAFLQGISQSKGANVLVEIQRVIQDG
NDVAVHYKKSIAGKTSIVFDIFRFDSNGKIVEHWDNMQDSAPANPSGHTMIDGTTQIA
DLNQTETNKALIRKFVDDVLVGKNRAALESYYNGDQYIQHNPLFGDGVSNLKQAFSAT
GSQGASFGYGQVHMVLGEGNFVLVVSELTSSKGTSAAVYDLFRVENGKVAEHWDVVQE
VPAKTEWKNTNGKF"
misc_feature 338217..338510
/locus_tag="PPE_00302"
/note="Copper amine oxidase N-terminal domain; Region:
Cu_amine_oxidN1; pfam07833"
/db_xref="CDD:203776"
misc_feature 338514..338831
/locus_tag="PPE_00302"
/note="Nuclear transport factor 2 (NTF2-like) superfamily.
This family includes members of the NTF2 family,
Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases,
and the beta subunit of Ring hydroxylating dioxygenases.
This family is a classic example of...; Region: NTF2_like;
cl09109"
/db_xref="CDD:211454"
misc_feature 338895..339269
/locus_tag="PPE_00302"
/note="Nuclear transport factor 2 (NTF2-like) superfamily.
This family includes members of the NTF2 family,
Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases,
and the beta subunit of Ring hydroxylating dioxygenases.
This family is a classic example of...; Region: NTF2_like;
cl09109"
/db_xref="CDD:211454"
gene 339378..340055
/locus_tag="PPE_00303"
/db_xref="GeneID:9773060"
CDS 339378..340055
/locus_tag="PPE_00303"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868723.1"
/db_xref="GI:308067118"
/db_xref="GeneID:9773060"
/translation="MEGLKQRVGCLHAHHSNIAYVERAFASYEVELIHFVDPGLMRRI
SSDPHFSADDASRKVEEQLRWIAQSDIDVILITCTNYIVLAEKAQLTMPTPVIALDEP
FFHEICDDLLLRTLVFTNPATVEGTMKRLYHTAALLGKPDISSWIEVKVVEDAFELIM
QGREDEYRELLVRSLYELREADPSRELVVAQLSMVDAALQVELETGQTIGNPLRSLSN
SIEALLG"
gene complement(340154..341158)
/locus_tag="PPE_00304"
/db_xref="GeneID:9773061"
CDS complement(340154..341158)
/locus_tag="PPE_00304"
/note="COGMatches:COG1609; PfamMatches:PF00356, PF00532;
PrositeMatches:PS00356, PS50932; go_component:
intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_003868724.1"
/db_xref="GI:308067119"
/db_xref="GeneID:9773061"
/translation="MVSIKDIAKQAGVSISTVSYALNGSDKVTEETCARILAIAKELN
YVPNAAARNLKKRQTKIIGVFLTDFRGDVYGDLLYGIKEILNRKGYDLIVCSGKQSHR
MLPERMIDGAIVLDQTFDSQELLNYAERGHKIVVLDRELNHPNINQVLLDNKAGAALA
IEHLLELGHRKLYVVTGPEGSYDSWQRMQAVKQTIERSGVAEMIEIDGDFEKSGGEQA
AEIILQQQVGPGSEPVAVFCLNDEMAVGFYNRMAQSELTIGKDIHIVGFDNIELAQYI
QPRLTTIDYSKRKWGAVAAEQVLKIIAGEDVEHEHLYVTLVQRESAGAAFITQDQQNL
"
misc_feature complement(340187..341155)
/locus_tag="PPE_00304"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature complement(340991..341146)
/locus_tag="PPE_00304"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature complement(order(340994..340999,341003..341008,
341015..341017,341024..341026,341063..341065,
341072..341077,341090..341092,341099..341104,
341108..341122,341144..341146))
/locus_tag="PPE_00304"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature complement(340997..341026)
/locus_tag="PPE_00304"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature complement(340208..340978)
/locus_tag="PPE_00304"
/note="Ligand binding domain of the LacI tanscriptional
regulator family belonging to the type I
periplasmic-binding fold protein superfamily; Region:
PBP1_LacI_sugar_binding_like; cd06267"
/db_xref="CDD:107262"
misc_feature complement(order(340400..340405,340412..340414,
340424..340426,340520..340522,340835..340843,
340850..340852,340859..340861,340871..340873,
340877..340891,340910..340915,340919..340924,
340931..340939,340976..340978))
/locus_tag="PPE_00304"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:107262"
misc_feature complement(order(340304..340306,340355..340357,
340529..340531,340598..340600,340706..340708,
340745..340747,340814..340816,340928..340930,
340937..340942))
/locus_tag="PPE_00304"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107262"
gene complement(341321..344764)
/locus_tag="PPE_00305"
/db_xref="GeneID:9773062"
CDS complement(341321..344764)
/locus_tag="PPE_00305"
/note="COGMatches:COG3459"
/codon_start=1
/transl_table=11
/product="cellobiose phosphorylase"
/protein_id="YP_003868725.1"
/db_xref="GI:308067120"
/db_xref="GeneID:9773062"
/translation="MNTSLDQNILLRAGDLSFTFLSSGDVYKIAHGSTMINQLLTNSV
DGSLNNLYLRLYRPSGVSITPLLGVRSPGVIRQTDQQIIWEGFTAGVGYQVTFTLSRL
GVWFWDVTLQGDDVEADVVYGQDIGIADTAAVRSNEAYLSQYIDHTVYHDEQRGYTVC
SRQNQPQSQAFPYIQQGSLTRTVGYSTDGFQFFGLSYKETNEPEALRRDSLANEVYQY
EFAYTALQSERMKLAGEARFTFYGLFQPNHPAAVTKLEYQELVTKARDEVAAVLADTS
ETSIPAHATSDLQAGRVAPAQTIGEPLRTLDLTDAEVDQLFPKRQEEERDGDELLSFF
TDSYEHVVLKSKELRVERPHGHILMGGHYSGGKEETITTTSYMYGVFNSQLVIGNTNF
NKMITNARNALNIPKTSGQRIYVGIQGKYRLLTMPSLFEIGFNYARWYYKTADDTFII
TNHTNVDSPEVRLYMRAASGKTYSFLITQQMSMHVNEYELPFHMEREGDALLFRADSA
SLSAEAYPDLLYRMHVEGAPLQHVSDAQALLQGGASPDASLVVLELGDSNEWTCTVQG
WLNGLPAGQEKSAHKERHASFEDERERYREYFAELMNGFHLSLGQHETNELFRVNAVA
WWYTHNMLVHYSVPHGLEQYGGAAWGTRDVCQGPVEYFSAVQKFDEVRSILLTVFSHQ
YEDSGNWPQWFMFDNYTHVQQEESHGDIIVWPLKVLGDYLTATRDYSILGENVPYTHR
HTFGYTKQTATLMEHALKEIEYIRENFLHDTYLSAYGDGDWDDTLQPANAQLKQYMAS
SWTVALTYQVISNFAAALEQAPAGVVSEAGKIAQDLHQMANGIRKDFNRYMLESGIIP
GFVYMEEPGQPKLMLHPSDTDTGIHYRLLPMTRSMISQLLTPEQALAHEQLIREQFLC
PDGVRLMNRPAQYDGGVSSHFKRAEQAANFGREVGLQYVHAHIRFAEAMAKLGRKDDA
WHSLKLINPVGIRASVPNAEWRQSNAYFSSSDGKFNTRYEAQERFGELREGAIPVKGG
WRIYSSGPGIYMNQLISNVLGVRQSGEDLILDPVLPDHLDGLEFEFSFAGKPITFVYR
MLQEHTGGEQGRTVLNGTPLESVPADDNRYRSGALRIKREIFEQALAEHDGVHRLEII
L"
misc_feature complement(341438..344731)
/locus_tag="PPE_00305"
/note="Cellobiose phosphorylase [Carbohydrate transport
and metabolism]; Region: COG3459"
/db_xref="CDD:33262"
gene complement(344790..346952)
/locus_tag="PPE_00306"
/db_xref="GeneID:9773063"
CDS complement(344790..346952)
/locus_tag="PPE_00306"
/EC_number="3.2.1.21"
/note="COGMatches:COG1472; PfamMatches:PF00933, PF01915;
PrositeMatches:PS00775; go_process: carbohydrate
metabolism (GO:0005975)"
/codon_start=1
/transl_table=11
/product="Periplasmic beta-glucosidase"
/protein_id="YP_003868726.1"
/db_xref="GI:308067121"
/db_xref="GeneID:9773063"
/translation="MEQHLNSYLENMTLEEKVDQLLQLVGAFFEEAGTDSQITGPMAS
LGITEKNVHNVGSVLGIAGAKEAIRVQQAHLSKNRLGIPLLIMADIVHGFKTIFPIPL
AIGCSWDVQLAEESATIAAREAAVSGVHVTFAPMVDLVRDPRWGRVMESTGEDPYLNS
EFARAFVRGFQGKDLTNDTNRVAACVKHFAAYGAGEGGRDYNTVDVSAWQLREYYLPS
YKAALDEGCEMVMTSFNTVEGVAATGNKRLMRDLLRDEWGFDGVLISDWAAIKELIPH
GIAEDEREAAKKALLAGVDIEMMTSCYNGHLPELVRSGQLDEALIDEAVMRILKLKQK
LGLFENPMRGADPEREREVVFCEAHRTVAKELATKSCVLLKNDSVLPLKRNQHIALIG
PFADSGDILGSWSWSGSQEEAIRVVDGFQSKISSSLLTVAAGCSIDDITEEQYAEALQ
AASQAEVIVLALGERSDMSGEAGSRSNIRLPQAQLELVKRLKTLNKPMVVVLFNGRPL
DLHGVIEEADAILEAWFPGGEGGAAIADLLYGDAEPTGRLTMSFPQSVGQVPVYYNHF
NTGRPQLDPNTKERYVSQYLDVPNEPLFPFGYGLSYTEVAYDSVQLSGDTLTPGQELT
VKVQVANTGTRPVEETVQFYIRDISGDTVRPMKELKYFCKVLLAPGESREVEFALTEP
QLRYHHADLSFSSDSGEFAVFTGPNSRDTSESRFRLVK"
misc_feature complement(344799..346928)
/locus_tag="PPE_00306"
/note="beta-D-glucoside glucohydrolase; Provisional;
Region: PRK15098"
/db_xref="CDD:185053"
misc_feature complement(345960..346916)
/locus_tag="PPE_00306"
/note="Glycosyl hydrolase family 3 N terminal domain;
Region: Glyco_hydro_3; pfam00933"
/db_xref="CDD:201514"
misc_feature complement(344829..345038)
/locus_tag="PPE_00306"
/note="Fibronectin type III-like domain; Region: Fn3-like;
pfam14310"
/db_xref="CDD:206478"
gene 347554..348807
/locus_tag="PPE_00307"
/db_xref="GeneID:9773064"
CDS 347554..348807
/locus_tag="PPE_00307"
/note="COGMatches:COG1653; PfamMatches:PF01547;
PrositeMatches:PS00013; go_process: transport
(GO:0006810)"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter periplasmic protein"
/protein_id="YP_003868727.1"
/db_xref="GI:308067122"
/db_xref="GeneID:9773064"
/translation="MMKRTLGIILASTLLLGGALVGCSSKDDSSGKDANGKTTITLWG
MGAEGKLLPEIVKDFEKENPDIHVDVQALPWDNAHDKLLTAVASKSGPDVVQLGTSWV
PELASAGALTDITPYISKYPELESKNFFPGAVSTTKFEGKPVGVPWYTETRVLFYRSD
LLKQVGYNEAPKTWEELSDAAQKLAARGKGKYGISFSAKEQSMGFMFALQNGSKLVDE
QGNPLFNQPPFVDAVKYVNTFFQNGSNAVDIGIDSVQGLQGEGIVPMFISGPFMIKEI
KSKAPELEGKWNIAELPGKVNNLSVLGGANLSIMQFSKHPEESAKFMAYMSKPETQLK
WMDLSSNLPATTKSWENAKLKSDPMLRTIRKQLDHSAALPQLAAWEEVSQQFIKSFER
IYRGHADVQKEMDDFNQQAASIMKK"
misc_feature 347554..348804
/locus_tag="PPE_00307"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
misc_feature 347692..348549
/locus_tag="PPE_00307"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:201851"
gene 348844..349728
/locus_tag="PPE_00308"
/db_xref="GeneID:9773065"
CDS 348844..349728
/locus_tag="PPE_00308"
/note="COGMatches:COG1175; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="lactose ABC transporter permease"
/protein_id="YP_003868728.1"
/db_xref="GI:308067123"
/db_xref="GeneID:9773065"
/translation="MKGSSQKLAPYLFIGPSIILLTLFSLLPILLALVISFTDMDLSG
LVNYDSIRFIGLENYTNVLLDPSFIKSLGNTLFFVIIGVPLVLIFSLSIAILINMGKS
RAFKVFRVVFYLPSVTNVVAVAVVWSYLYNPTLGLFNYVLGLMNLGPVPWLTDPTVAK
VSLIVLAVWRGIGLNMIIFIAAIKGIPGSYYEAAQLDGANTWQQIRYITLPQLRYAIF
FVSITTMIGWLQFFEEPFVMTKGKPLDGTLTASLFIYNNGFQFSKFGYAAAGSFILFF
AIIAVTLIQFRLQNKAES"
misc_feature 349057..349680
/locus_tag="PPE_00308"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(349105..349110,349117..349122,349135..349137,
349165..349176,349180..349209,349216..349221,
349225..349227,349345..349350,349357..349359,
349363..349365,349372..349377,349381..349383,
349393..349398,349405..349407,349456..349458,
349498..349503,349510..349512,349531..349542,
349549..349554,349597..349602,349630..349635,
349642..349647,349651..349656,349663..349668,
349675..349680)
/locus_tag="PPE_00308"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(349183..349227,349531..349548)
/locus_tag="PPE_00308"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(349225..349227,349330..349332,349549..349551,
349591..349593,349600..349602,349630..349632)
/locus_tag="PPE_00308"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(349408..349446,349462..349467,349477..349479)
/locus_tag="PPE_00308"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 349747..350601
/locus_tag="PPE_00309"
/db_xref="GeneID:9773066"
CDS 349747..350601
/locus_tag="PPE_00309"
/note="COGMatches:COG0395; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_003868729.1"
/db_xref="GI:308067124"
/db_xref="GeneID:9773066"
/translation="MKTAVQQARANSRSGEKTFQWFVAILLTVGGLLMVLPFAWMILS
SFKTEGEVTKIPPTIWPQHFTLDNFKLLFDSMAFGTYLTNTLIIVLASFFGLFLNAMA
GYGFAKFKFKGKGFLFYLVLATMMIPGQVTMIPVYLILNQMGLTNSMLGIVLPGLVGA
FAIFLFRQFMSDIPEELLEATRLDGAGEFRTFLQIVLPISTPILAVQAILTFIGGWNS
FLWPLIIANDEKLYTLSVGLSLLKGQNESQFALQMAGSTFMVVPIMIIFIVFQKYIIE
NYTISGIK"
misc_feature 349774..350598
/locus_tag="PPE_00309"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature <350107..350445
/locus_tag="PPE_00309"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(350110..350139,350146..350151,350155..350157,
350221..350223,350227..350229,350236..350241,
350245..350247,350257..350262,350269..350271,
350320..350322,350362..350367,350374..350376,
350395..350406,350413..350418)
/locus_tag="PPE_00309"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(350113..350157,350395..350412)
/locus_tag="PPE_00309"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(350155..350157,350215..350217,350413..350415)
/locus_tag="PPE_00309"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(350272..350310,350326..350331,350341..350343)
/locus_tag="PPE_00309"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(350744..350998)
/locus_tag="PPE_00310"
/db_xref="GeneID:9773067"
CDS complement(350744..350998)
/locus_tag="PPE_00310"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868730.1"
/db_xref="GI:308067125"
/db_xref="GeneID:9773067"
/translation="MSKPYPSNKEGLSTGYCFSKAQIHTMGGFENERVRTGKAMDTLQ
FLSQASEARRLYETRQKYMHDEASMIDRAKSIEIAKAKKT"
misc_feature complement(350780..>350887)
/locus_tag="PPE_00310"
/note="PD-(D/E)XK nuclease family transposase; Region:
PDDEXK_2; pfam12784"
/db_xref="CDD:193260"
gene 351189..352940
/locus_tag="PPE_00311"
/db_xref="GeneID:9773068"
CDS 351189..352940
/locus_tag="PPE_00311"
/EC_number="3.1.-.-"
/note="COGMatches:COG3119; PfamMatches:PF00884;
go_process: metabolism (GO:0008152)"
/codon_start=1
/transl_table=11
/product="arylsulfatase A"
/protein_id="YP_003868731.1"
/db_xref="GI:308067126"
/db_xref="GeneID:9773068"
/translation="MNDSSFLPRLLEQPNFLVLLVDEERYPAVYENPEIKEWSRQNLI
TQGLLRSYGLEFHRHYIGSAACSPSRTTLFTGHYPSLHGVTQTDGVAKEAFDSDMFWL
DRNTVPTMGDYFRAAGYQTYYKGKWHISDEDIIIPGTHKALPSYHPVTGVPYRKREDL
YNQADRLDQFGFSRWIGPEPHGRNPRNSGSSAAFGLSGRDEVYAADTVELIEALDRRK
RNDNHAKPWLVVASFVNPHDIVLYGAITARLPMFRFEVEPMPAVAHPPTINEWLATKP
RCQASYRDIYPRALQPIIDQPFYRKLYYQLQKNADRQMFKVFEALTRSSFYDNTIVIF
TSDHGDLLGAHGNLHQKFYCAYEEIVHVPLVIHNQHLFPQYKSEHILTNHVDLLPTML
GLANVDITAIQSRLQNSFTEARPLVGRDLTPVIRGQDQGEIADQPVYFMTDDDVTRGQ
RQISVLGEPYPSVIQPNHIETVIAPLQRDGVQELWKFSRYFDSAQFWSQPGVMDVTIR
PVGDHTCGPYSQWATQVKIEPDHDEYELYNLTSDPLEVCNLAHPAFATQQTRSIQQQM
MHLLEEQRKHKRLYPAT"
misc_feature 351222..352508
/locus_tag="PPE_00311"
/note="Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism]; Region: AslA; COG3119"
/db_xref="CDD:32933"
misc_feature 351228..352472
/locus_tag="PPE_00311"
/note="Sulfatase; Region: Sulfatase; pfam00884"
/db_xref="CDD:201490"
gene complement(353011..353598)
/locus_tag="PPE_00312"
/db_xref="GeneID:9773069"
CDS complement(353011..353598)
/locus_tag="PPE_00312"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868732.1"
/db_xref="GI:308067127"
/db_xref="GeneID:9773069"
/translation="MPTTTVIDCCKEDQCRGSSRCFYRKICELYLSEVYRFCMHLIKN
QSCFKFMAEECTQDTFVAARQQLVKLKHHPNVKGWLYLTAKNLIYKSFRCYYTQKKHE
TTFECEKICSFSNSVEEEWENCRLGDVDTVIVNILMQLSNNEYILYEDYFCRQLAVPL
LATKYNISVTATTTRIYRLKRKLRTLSHQYCLTHI"
misc_feature complement(353041..353517)
/locus_tag="PPE_00312"
/note="RNA polymerase sigma factor, sigma-70 family;
Region: sigma70-ECF; TIGR02937"
/db_xref="CDD:211770"
misc_feature complement(353320..353517)
/locus_tag="PPE_00312"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
gene 353816..355558
/locus_tag="PPE_00313"
/db_xref="GeneID:9773070"
CDS 353816..355558
/locus_tag="PPE_00313"
/note="COGMatches:COG1132; PfamMatches:PF00664, PF00005;
PrositeMatches:PS00211, PS50893, PS50929; go_component:
integral to membrane (GO:0016021), go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="multidrug ABC transporter protein"
/protein_id="YP_003868733.1"
/db_xref="GI:308067128"
/db_xref="GeneID:9773070"
/translation="MKESIVYKRLAATFRPYLKTVTIILICLILSAGLNILLPLTSKI
IVDQGLLKGNMQAVILYTSAAFLIVCLDKLLNVCKETFRAGLSAQVTFSLFEKAYLHL
TRVRMSYFNRTNEAELLNQIGTDVGNVSRITDSGVFFVIMQAFSMIGGLCGLLLINWK
MTVIVLCFLPIKYVVVKYFVKRRKKLVGDLIEGSSDFAQWFGESVGGMKEQRMFGLIP
HKHQQFSSKQRRIVESERKLSLLDAWNIASESILIQLLMMLLYVVGANLIFRLQLTVG
GIFAFVSYSAYVTTPVFAILNIGYMLAEVVPSAIRYYQFLDWAEEETSNSVTPASILT
EPPFEDHIAFHNVSFSYTKDEPVLLHVSFRIARGEKVAIIGANGAGKSTLLDLIMRFS
QPDQGIITYDGIDIQSYEIDEYRSQIALVSQQVYLFDTTIFGNIRIGTEVTNDAIEAI
IAEVGLEELVQNSADDFPIGSNGSRLSGGQRQKIAMARALIREAPLFILDEVTSNLDT
AARLNVQQLLKTRLRDKTVIIVTHRSEILAHVDRVILLENGEPAQIGSHSHFMTCHAE
YRGWVLGEEEVPIK"
misc_feature 353828..355528
/locus_tag="PPE_00313"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature 353876..354691
/locus_tag="PPE_00313"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; cl00549"
/db_xref="CDD:207103"
misc_feature 354839..355519
/locus_tag="PPE_00313"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 354938..354961
/locus_tag="PPE_00313"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(354947..354952,354956..354964,355082..355084,
355313..355318,355409..355411)
/locus_tag="PPE_00313"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 355073..355084
/locus_tag="PPE_00313"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 355241..355270
/locus_tag="PPE_00313"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 355301..355318
/locus_tag="PPE_00313"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 355325..355336
/locus_tag="PPE_00313"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 355397..355417
/locus_tag="PPE_00313"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(355658..355948)
/locus_tag="PPE_00314"
/db_xref="GeneID:9773071"
CDS complement(355658..355948)
/locus_tag="PPE_00314"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868734.1"
/db_xref="GI:308067129"
/db_xref="GeneID:9773071"
/translation="MYIKGWHMFMIHTYSVLMWTEAWNAQAPPYRYELNNYQFQFRYL
CDKNRHFHAEYWSFESNCLRNNRSKDNNRNNHSQMPQSCRLHSCFFSQAYAC"
gene 355920..357374
/locus_tag="PPE_00315"
/db_xref="GeneID:9773072"
CDS 355920..357374
/locus_tag="PPE_00315"
/note="COGMatches:COG0641; PfamMatches:PF04055;
PrositeMatches:PS01305; go_fucntion: iron ion binding
(GO:0005506)"
/codon_start=1
/transl_table=11
/product="arylsulfatase regulator"
/protein_id="YP_003868735.1"
/db_xref="GI:308067130"
/db_xref="GeneID:9773072"
/translation="MNMCQPFIYTFQTRLHHYVYDVNTNLILRIKEEAYHFLNSHSSF
DLDQMEATPELQQYIRDLLDNGFLSSQRPQIMNHPKTKHLEHMLQHQLKTLTLQVTQN
CNLRCSYCVYSGGYDNRGHTSLMMDFETARKCIDFVIDRSVDSDRLDFGFYGGEPLIN
FPLVKKCVEYIKEQVAYRDVGFHLTTNGTLLNDDILDFLDEHHFVLTISLDGDQENHD
RNRRFAVNGRGSFDTIIANVDKIKRNYPDLFEWINFNVVLDTRNDFGCINDFYTNYET
FESLYSVRSSYINDAYVKDEILYRNEFIEQRGYEVVKMMLSKFGRVDENHVSKLIKDY
YIQMYFRMFHYRKPSAGMPIEAHHGGPCVPGVQRLFADVHGNLYPCERVSEQSEVVQI
GKVDTGFEVDKISQILNVGTITEDACKNCWNFRFCTLCVAVADDLHTLSKEKKLSHCS
VVKNDIRHTLLDYCMMNELGYDFSEDTILDFEKA"
misc_feature 355938..357335
/locus_tag="PPE_00315"
/note="Cys-rich peptide radical SAM maturase CcpM; Region:
rSAM_ocin_clost; TIGR04068"
/db_xref="CDD:188583"
misc_feature 356208..>356648
/locus_tag="PPE_00315"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(356226..356228,356232..356234,356238..356240,
356244..356249,356268..356270,356376..356378,
356382..356387,356472..356480,356544..356546)
/locus_tag="PPE_00315"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 357386..358510
/locus_tag="PPE_00316"
/db_xref="GeneID:9773073"
CDS 357386..358510
/locus_tag="PPE_00316"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868736.1"
/db_xref="GI:308067131"
/db_xref="GeneID:9773073"
/translation="MTNKLIIFPFDYETIALVRNLNLLGSYEDVVLISFQGSGMIGKD
ACVTDKGEVTGFIVKPESCLEQEMERCDAILLVKSNFKLDVAEVYLPVIKKAGQLGKK
VMCNFTLPDSCMEFIEPCEEQDDKLILKNTFDVRTKDILPPDPGSVIHDFFTPVLFVL
GLNERTHKLNLQLNLRQKLEAQGYRVSQITSNGCGELIGAHSFPQFMFESGMTETQKI
IMFNRYLKKIEQSEKPDLILVGIPGGIVPFNNTFTNYFGVTSFLVSRAVRPDGLICCL
HYDEYNIKYLEHVKQYMENRFSSSLLGYAICNNVFDSYSSSTVNMQYASVDHRFVEEK
KQEFSNYSVPVLHLSNDEDMNRLTKDILHYFSVDHHVVQL"
misc_feature 357392..358486
/locus_tag="PPE_00316"
/note="peptide maturation system protein, TIGR04066
family; Region: nat_prod_clost"
/db_xref="CDD:188581"
gene 358524..358799
/locus_tag="PPE_00317"
/db_xref="GeneID:9773074"
CDS 358524..358799
/locus_tag="PPE_00317"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868737.1"
/db_xref="GI:308067132"
/db_xref="GeneID:9773074"
/translation="MNFTQDVTGTGMKLENIFWKLFKIKAGEINKEATLLGPDMGLFP
RDLVYLLFEVEKSFAILIPEEHIVGGGLLTYNSLYETIKDCLTVEKE"
misc_feature 358548..358769
/locus_tag="PPE_00317"
/note="peptide maturation system acyl carrier-related
protein; Region: ocin_ACP_rel; TIGR04069"
/db_xref="CDD:188584"
gene 358923..359705
/locus_tag="PPE_00318"
/db_xref="GeneID:9773075"
CDS 358923..359705
/locus_tag="PPE_00318"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868738.1"
/db_xref="GI:308067133"
/db_xref="GeneID:9773075"
/translation="MNVSFTSSHQSPFRTADNNRLELRHSLSAQAERKGIGKPQNKVI
QQLTEQKQNLMERRSDYLSNALKRGLGPEAVKAEMEEIDKQIQQIDENIQKQSLEEQK
KALGMDEESEKEAQKGKKEEYTPKTAEEQQQRLITYTMHSVVSANNELKSAKIAKTAQ
LTLGSEAKGWENANPAKSAALREKAEGLNGKIMEIAANINERISEAVNNEPMITDRVE
PKDEQGANAEAGRVWTEQELNAYLDSAKDGAKTAGTKVNIAV"
gene 359854..361440
/locus_tag="PPE_00319"
/db_xref="GeneID:9773076"
CDS 359854..361440
/locus_tag="PPE_00319"
/note="COGMatches:COG1404"
/codon_start=1
/transl_table=11
/product="subtilisin-like serine protease"
/protein_id="YP_003868739.1"
/db_xref="GI:308067134"
/db_xref="GeneID:9773076"
/translation="MNGKIHVAIIDDGVNTGFLNTQLLYNVEIAHGDVEDGRTLNHGT
LCAAIVQTYFPDAIISSVKIMNHRKGNATQLCAALDWCVKHGVQVANISLGSINYRDR
GMLREAVNNAAMAGLIMVCAAQNGGLLTYPASFANVIGVRCDHPGILTAGQYTYDAEK
AFSSGIDFTAFAKHELVGAAGEAVQCPNSNSYATPLITAHICKVLQQSKPVPSVEQLK
HILHKYSYLPIQDTIIPVMRYGHPDWIRRAYVFIEDCAISSKAPYYFQTQCEAQLPSD
KVAAIFEQAILREREQQDTALEGGQRVYGLTDTIVLLGEMESVSLQEVEQLASRYGKH
VVYISKNQRYIPALNFSSCYLRWWQQEGGLFMTQEEAIAIEDSRIPLICIYYDKGFDI
IYFLHELRGEFAQDGYQSWIAVDQSAAVLHDMEYTLPSDASNGLQELLYNAGTMAYNA
YTDIAILCVEATNITHCTKERVLLDVDIELSILVKAETERIYISIRTEQGYLKEWVLS
NLNVGDIGGIYTYLEQLLVD"
misc_feature 359863..360519
/locus_tag="PPE_00319"
/note="Peptidase S8 family domain, uncharacterized
subfamily 8; Region: Peptidases_S8_8; cd07492"
/db_xref="CDD:173817"
misc_feature order(359884..359886,359977..359979,360130..360138,
360217..360219,360223..360228,360424..360426)
/locus_tag="PPE_00319"
/note="active site"
/db_xref="CDD:173817"
misc_feature order(359884..359886,359977..359979,360424..360426)
/locus_tag="PPE_00319"
/note="catalytic triad [active]"
/db_xref="CDD:173817"
gene 361746..363260
/locus_tag="PPE_00320"
/db_xref="GeneID:9773077"
CDS 361746..363260
/locus_tag="PPE_00320"
/EC_number="3.2.1.55"
/note="COGMatches:COG3534; PfamMatches:PF06964;
go_process: L-arabinose metabolism (GO:0046373)"
/codon_start=1
/transl_table=11
/product="alpha-N-arabinofuranosidase"
/protein_id="YP_003868740.1"
/db_xref="GI:308067135"
/db_xref="GeneID:9773077"
/translation="MAAAVKAKMIVDKSFRIAEVDKRIYGSFVEHLGRAVYGGIYEPT
HSTSDESGFRNDVKELVKQLDVPIIRYPGGNFVSGYNWEDGVGPVASRPRQLELAWRT
VEPNEVGTNEFFKWAKDVGSEVMMAVNLGTRGIDAARNLVEYCNHTGGSYWSDLRRSH
GVEQPHKIKTWCLGNEMDGPWQIGHKTAEEYGRLAVESAKAMKLIDPDIELVSCGSSS
STMPTFPEWEATTLDHTYEVADYISLHQYYGNHDNDTANYLARSMDMDHFIHTVISTC
DYIKAKKHSKKKMMLSFDEWNVWYHSNDADKKIDPWSVAPPQLEDIYNFEDALLVGSM
LITFLRHADRVKMACLAQLVNVIAPIMTENNGKAWKQTIFYPYLHASRYGRGVSLMPV
VNSEKYDSKDFTDIPYLDSAVVYDEEGDALTVFAVNRHLSESLELTVDVRSFEGYRIV
EHTVLEHDDLKATNSPAGEKVTPHNDGNAKLEDGIVKAHLGKASWNVIRLAKSH"
misc_feature 361761..363251
/locus_tag="PPE_00320"
/note="Alpha-L-arabinofuranosidase [Carbohydrate transport
and metabolism]; Region: AbfA; COG3534"
/db_xref="CDD:33336"
misc_feature 362625..363227
/locus_tag="PPE_00320"
/note="Alpha-L-arabinofuranosidase C-terminus; Region:
Alpha-L-AF_C; pfam06964"
/db_xref="CDD:203553"
gene 363681..365576
/locus_tag="PPE_00321"
/db_xref="GeneID:9773078"
CDS 363681..365576
/locus_tag="PPE_00321"
/note="COGMatches:COG0326; PfamMatches:PF02518;
go_fucntion: ATP binding (GO:0005524)"
/codon_start=1
/transl_table=11
/product="molecular chaperone HSP90"
/protein_id="YP_003868741.1"
/db_xref="GI:308067136"
/db_xref="GeneID:9773078"
/translation="MSQTDQYRFQVNLGGMIDILANHLYSSPRVFIREVLQNATDAIT
ARKELRKVAAESKVLKEDKALEATASESNDYEGKVIVELSGSGEHQVLMIQDNGIGLS
EEDIHRFLSIIGQSSKKGADLLASETSFIGRFGIGLLSCFMVSDEIVVLTRSVKEGIS
MEWRGKPDGTYTIRRLETELPVGTQIYLRCKPGSEFYYEPAHVEESLFYYGALLPYPV
MLSVDGETKRVNLPSTSWMQDPEQLRSRRSEVLDLGYRLMGERFSDFIPLRTASGRTG
GIAFILPRSVNLNSKRLHRVYLKHMLVSDKAENVLPEWAFFIKSLIWTDELQPTASRE
YFYENEQLDDVRSELGTCIREELLRMAQYEPDRLQHWIRLHELSMKALAVEDDEFLRI
MYRWFSFESTFGRRELKELIQEADGRPLHYTSTVDEYRQITHVAAAQSMLVINGGYIY
DSDILEKLHWIDSKLQTERLSPEEVSLSFTGLTQEERENYYGVLRVMDAALQPMRCRA
ELKRFEPASLPVLYTISQDALTLRSMENTVEETTSLFSNVLDSLKAGVQQNSGYSTLY
FNLNNPVVARILEATDTQMVTAATEMMYVNALMMGHYPMNRSELGLMNRSVLHFINWG
LGNGQNS"
misc_feature 363702..365570
/locus_tag="PPE_00321"
/note="HSP90 family protein; Provisional; Region:
PRK14083"
/db_xref="CDD:184494"
misc_feature 363894..>364118
/locus_tag="PPE_00321"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(363960..363962,363966..363968,363972..363974,
363978..363983,364083..364094)
/locus_tag="PPE_00321"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature order(363972..363974,363978..363980,364083..364085,
364089..364091)
/locus_tag="PPE_00321"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 365601..366662
/locus_tag="PPE_00322"
/db_xref="GeneID:9773079"
CDS 365601..366662
/locus_tag="PPE_00322"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868742.1"
/db_xref="GI:308067137"
/db_xref="GeneID:9773079"
/translation="MEDTIYDLMEQAQNLPGGAAKLALLEEAVRLADTSGLKALAYEI
RGEIVDCAIFNGYPLKSLIAFSWQLGQFDQNPEEYDADELLWNYKWILGKVCSFSNIS
KTQIEDLAEDMRRRYAEYGYNERPYYYYKFRIAMDMGELDEARRYLDTFRLVERDSMS
DCEACEQSQMVRFYYLTGEDEQALAVAKPILSGRMKCAEVPHVTLSQVLLPLYRQGEV
DQAKDNHRKGYRLIRDDRDFLKTIAEHIEYLAIADPVQGIEVVERHLHMALDYESGLE
QMYFYATMVSLLQKLDTSGEKRLIRLPASLEWGKEDRTLTEIIAYFRPLAESAAADFD
RRNGNTFYSDWIGKIVQTA"
gene 366751..367497
/locus_tag="PPE_00323"
/db_xref="GeneID:9773080"
CDS 366751..367497
/locus_tag="PPE_00323"
/EC_number="3.1.4.46"
/note="COGMatches:COG0584; PfamMatches:PF03009;
go_process: glycerol metabolism (GO:0006071)"
/codon_start=1
/transl_table=11
/product="glycerophosphodiester phosphodiesterase"
/protein_id="YP_003868743.1"
/db_xref="GI:308067138"
/db_xref="GeneID:9773080"
/translation="MTVIEKVINFAHRGASGVCPENTMAAFRHALELGATGIETDVQR
TQDGHLVLIHDESLERTTGCSLDVRDITLEELNKLDAGGWFDEKFRGERVPMLDELLE
LAQSSNTIINLELKNSIYLYPGMEEEVIAAVKRFGLEQRVIISSFNHESLALCAQLAP
EIKTGALYIEIMVRPSKYATQFGATALHAYKQVVTPEAVSEALALGVVYHPWTVNEPE
EMKRLLEAGVNGIITDYPDRLAHLLAVRSS"
misc_feature 366775..367458
/locus_tag="PPE_00323"
/note="Glycerophosphodiester phosphodiesterase domain of
Thermoanaerobacter tengcongensis and similar proteins;
Region: GDPD_TtGDE_like; cd08563"
/db_xref="CDD:176506"
misc_feature 366784..367461
/locus_tag="PPE_00323"
/note="Glycerophosphoryl diester phosphodiesterase family;
Region: GDPD; pfam03009"
/db_xref="CDD:202508"
misc_feature order(366784..366786,366865..366867,366871..366873,
366910..366912,367090..367092,367189..367191,
367249..367251,367384..367386)
/locus_tag="PPE_00323"
/note="active site"
/db_xref="CDD:176506"
misc_feature order(366784..366786,366910..366912)
/locus_tag="PPE_00323"
/note="catalytic site [active]"
/db_xref="CDD:176506"
misc_feature order(366865..366867,366871..366873,366910..366912,
367090..367092)
/locus_tag="PPE_00323"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:176506"
misc_feature order(367102..367107,367189..367191,367195..367200,
367207..367209,367258..367269,367279..367284,
367291..367296,367339..367341)
/locus_tag="PPE_00323"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176506"
gene complement(367634..368461)
/locus_tag="PPE_00324"
/db_xref="GeneID:9773081"
CDS complement(367634..368461)
/locus_tag="PPE_00324"
/note="COGMatches:COG0500"
/codon_start=1
/transl_table=11
/product="SAM-dependent methyltransferase"
/protein_id="YP_003868744.1"
/db_xref="GI:308067139"
/db_xref="GeneID:9773081"
/translation="MIPEGNLQSNVDRFNGFADNYDQHRPEAPPLVVEIISRYLERNV
ELVADIGCGTGLSTFIWENAARQIVGIEPNPDMRGKAQHKLETAGTTMAGTISFKSGF
SNNLPFEDGTVDVITCSQSFHWMDPETTLQEAGRVLAQGGVFAAFDCDWPPVLQWQIE
QAYTELITKADTLLEQETPVEQQAHKWSKDQHLANLHRSGQFRYTREIVFHNREQCDA
ARYTGLALSQGGIQSLFKLGNRALDVDIARFVKLVENHFQGRTLDILFSYRMRLGIK"
misc_feature complement(368030..368323)
/locus_tag="PPE_00324"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(368105..368107,368156..368158,
368159..368161,368243..368248,368294..368314))
/locus_tag="PPE_00324"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(368606..369487)
/gene="galU1"
/locus_tag="PPE_00325"
/db_xref="GeneID:9773082"
CDS complement(368606..369487)
/gene="galU1"
/locus_tag="PPE_00325"
/EC_number="2.7.7.9"
/note="TIGRFAMsMatches:TIGR01099; COGMatches:COG1210;
PfamMatches:PF00483; go_process: biosynthesis
(GO:0009058)"
/codon_start=1
/transl_table=11
/product="UTP--glucose-1-phosphate uridylyltransferase
(UDP-glucose pyrophosphorylase)"
/protein_id="YP_003868745.1"
/db_xref="GI:308067140"
/db_xref="GeneID:9773082"
/translation="MRKITKAVIPAAGLGTRFLPATKALPKEMLPIVDKPAIQYIVEE
AIKSGIESIIIVTGRNKKAIEDHFDKSVELEQVLESKGKYDLLREVQSIGGKAVIHYI
RQKEPLGLGHAVSCARQFIGDEPFAVLLGDDIMNSSTPAIRQMMDVYEATGKQVVGVR
TVEEQDVSKYGIIDSTHQNGLIHEVGGLVEKPSPADAPSRQAVIGRYVLEPSIFSILE
NMSTGAGGEYQLTDALHQVALQNQLLALELEGTRYDIGDKAGYLEAVLHMGMQREDLR
PMLDSMMREWALASMIK"
misc_feature complement(368675..369475)
/gene="galU1"
/locus_tag="PPE_00325"
/note="Prokaryotic UGPase catalyses the synthesis of
UDP-glucose; Region: UGPase_prokaryotic; cd02541"
/db_xref="CDD:133021"
misc_feature complement(368693..369472)
/gene="galU1"
/locus_tag="PPE_00325"
/note="dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane]; Region: RfbA; COG1209"
/db_xref="CDD:31402"
misc_feature complement(order(368795..368797,368879..368881,
368915..368920,368975..368980,369089..369094,
369098..369100,369158..369169,369176..369178,
369404..369409,369449..369460))
/gene="galU1"
/locus_tag="PPE_00325"
/note="active site"
/db_xref="CDD:133021"
misc_feature complement(order(368675..368680,368687..368695,
368699..368707,368711..368719,368735..368737,
368807..368809,368981..368983,369167..369169,
369173..369175,369179..369184,369266..369271,
369281..369283,369287..369295,369299..369301,
369371..369373,369383..369391,369395..369403,
369413..369421,369425..369439,369446..369448))
/gene="galU1"
/locus_tag="PPE_00325"
/note="tetramer interface; other site"
/db_xref="CDD:133021"
gene complement(369484..369906)
/locus_tag="PPE_00326"
/db_xref="GeneID:9773083"
CDS complement(369484..369906)
/locus_tag="PPE_00326"
/note="COGMatches:COG2246; PfamMatches:PF04138;
go_component: integral to membrane (GO:0016021)"
/codon_start=1
/transl_table=11
/product="membrane protein"
/protein_id="YP_003868746.1"
/db_xref="GI:308067141"
/db_xref="GeneID:9773083"
/translation="MKSRMAQLLPMIRFGIVGLVNTGVDYILFILLAWVGVPVIVAQI
ISYSCGTANSYILNSKWTFNKQLSNDTNKRQLPKFIVINLIVLGITSLLLQVLHTGTE
LPLALGKLIATAAGMIINYIGSRYWVFGSPSRKESEFL"
misc_feature complement(369520..369870)
/locus_tag="PPE_00326"
/note="GtrA-like protein; Region: GtrA; pfam04138"
/db_xref="CDD:202906"
gene complement(369910..371001)
/locus_tag="PPE_00327"
/db_xref="GeneID:9773084"
CDS complement(369910..371001)
/locus_tag="PPE_00327"
/EC_number="2.4.1.83"
/note="COGMatches:COG0463; PfamMatches:PF00535"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_003868747.1"
/db_xref="GI:308067142"
/db_xref="GeneID:9773084"
/translation="MSEPIRYSIVIPMYNEEAVITETYRRLKQVMGSMGEPYELIFVN
DGSSDRSVQLIKEFSLRDDTIVLIDFSRNFGHQLAITAGMDYAVGEAVVVIDADLQDP
PELIVEMANKWKEGYEVVYAKRLKRNGETRFKKWSASLFYRVLKASTDINIPVDTGDF
RLMDRKVIDELKRLPENNRFVRGLVSWIGFKQTAVEYERDERLAGETKYPLKRMIKLS
LDGITSFSIKPLKLAGYIGALLSMSGFLYLMYVLFLNFFTDSYVMKGWSSMISISLIF
DGVILIILGIMGEYVGRIYDETKARPLYIVREHLGGQYENGPTHAMKVPEPRESLYMQ
GARESLISAGRTVRGNSAVYTGPKSGHGA"
misc_feature complement(370069..371001)
/locus_tag="PPE_00327"
/note="undecaprenyl phosphate
4-deoxy-4-formamido-L-arabinose transferase; Provisional;
Region: PRK10714"
/db_xref="CDD:182669"
misc_feature complement(370432..370977)
/locus_tag="PPE_00327"
/note="Bacterial DPM1_like enzymes are related to
eukaryotic DPM1; Region: DPM1_like_bac; cd04187"
/db_xref="CDD:133030"
misc_feature complement(order(370708..370710,370960..370962,
370966..370968))
/locus_tag="PPE_00327"
/note="Ligand binding site; other site"
/db_xref="CDD:133030"
misc_feature complement(order(370708..370713,370867..370869))
/locus_tag="PPE_00327"
/note="Putative Catalytic site; other site"
/db_xref="CDD:133030"
misc_feature complement(370708..370716)
/locus_tag="PPE_00327"
/note="DXD motif; other site"
/db_xref="CDD:133030"
gene complement(371019..373355)
/locus_tag="PPE_00328"
/db_xref="GeneID:9773085"
CDS complement(371019..373355)
/locus_tag="PPE_00328"
/note="COGMatches:COG1807; PfamMatches:PF02366;
go_component: membrane (GO:0016020)"
/codon_start=1
/transl_table=11
/product="4-amino-4-deoxy-L-arabinose transferase"
/protein_id="YP_003868748.1"
/db_xref="GI:308067143"
/db_xref="GeneID:9773085"
/translation="MNMIKKWFKTRADIPLIIIMLISAFLNGYNIWQDKYVNTYYTTA
VASMLQSFHNFFFASLDSAGSVTVDKPPVVFWIQTLSAYIFGLHGWSVILPQALAQVG
SVLLVYLLVKPSFGTMAARLAAFAMATTPIAVAVSRTNNIDAMLVFTLLLATWLLFRG
IRNSKTGLILAAFAVVGIAFNEKMLQAYMIVPALGLFYLLASKFNWKRKAVTLVGSAV
VLLIVSLSWAVVVDSTPADERPYMGSSGTNSVLNLAFGYNGLSRLTGDQGTGGNRGGK
RTDRNNNATTNSSDTNTDQAQTTTTSDSTTTTDDSGANNTAADGFGAGGQMPPGGFGG
NGQGGQGGPGGGPGGNSGGGMFGTGEKGPLRLFQSSLSGQASWLLPFALIASIGLLAS
IRRRNITQKHKEVIFWLAWLIPVAAFFSVAGFFHHYYLIMLAPPIAALFGAGFVELWK
QYRERSNWLSWLLPAAVLATSVFSWFVLQNYNDTIGRGWSIAVLILGIIGTVLLIVAR
MKSEKFTRFAIIASVLAMFIGPAYWALTPIIYGGNSMIPQAGPTQFGGGGGMLGGNDR
NRGQSANGQQAEGTQTNNQTNNAENSSPDGNTSSTQTSTDTEQKSSTRSRGMGGPNGS
QSLDQKTLSYLQKNNTGETYLFAASNYSTAAPYLVEARQKVIIMNGFVSSDPVYTVDK
IKALVESGQVKYFMISGGGGGPDGGNSEVTAWIKEHGKVIPTDEWKTTTTAETSTAVK
ATNSGNDTTNTNASAQDGQGGPGGDERGGSGTLYEITL"
misc_feature complement(<372633..373328)
/locus_tag="PPE_00328"
/note="4-amino-4-deoxy-L-arabinose transferase and related
glycosyltransferases of PMT family [Cell envelope
biogenesis, outer membrane]; Region: ArnT; COG1807"
/db_xref="CDD:31992"
misc_feature complement(372675..373151)
/locus_tag="PPE_00328"
/note="Dolichyl-phosphate-mannose-protein
mannosyltransferase; Region: PMT_2; pfam13231"
/db_xref="CDD:205412"
gene 373638..374324
/locus_tag="PPE_00329"
/db_xref="GeneID:9773086"
CDS 373638..374324
/locus_tag="PPE_00329"
/note="COGMatches:COG0745; PfamMatches:PF00072, PF00486;
PrositeMatches:PS50110; go_process: regulation of
transcription, DNA-dependent (GO:0006355)"
/codon_start=1
/transl_table=11
/product="sensory transduction protein"
/protein_id="YP_003868749.1"
/db_xref="GI:308067144"
/db_xref="GeneID:9773086"
/translation="MNPIHGVKIMLADDEPHILQFLELGLINEGYEVRTAENGSKALD
LAREFRPHVAVLDVMMPEMNGFEVCQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGAD
DYVVKPFSFNELLARIEARLRNQFPDLLGEVVHGPFQVDDRRKEIRYQSQVLELSPTE
YELLKFLVLNHGIVLSKSRILDRVWGYDFGGEDNIVEVYIRSLREKLKDKEHRVIRTL
RGVGYRVDLL"
misc_feature 373659..374309
/locus_tag="PPE_00329"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 373665..374003
/locus_tag="PPE_00329"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(373674..373679,373806..373808,373830..373832,
373890..373892,373947..373949,373956..373961)
/locus_tag="PPE_00329"
/note="active site"
/db_xref="CDD:29071"
misc_feature 373806..373808
/locus_tag="PPE_00329"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(373815..373820,373824..373832)
/locus_tag="PPE_00329"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 373956..373964
/locus_tag="PPE_00329"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 374034..374309
/locus_tag="PPE_00329"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(374106..374108,374163..374168,374220..374222,
374229..374231,374253..374258,374286..374288,
374301..374303)
/locus_tag="PPE_00329"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 374321..375811
/locus_tag="PPE_00330"
/db_xref="GeneID:9773087"
CDS 374321..375811
/locus_tag="PPE_00330"
/note="COGMatches:COG0642; PfamMatches:PF00672, PF00512,
PF02518; PrositeMatches:PS50885, PS50109; go_component:
membrane (GO:0016020), go_fucntion: ATP binding
(GO:0005524)"
/codon_start=1
/transl_table=11
/product="signal transduction histidine kinase"
/protein_id="YP_003868750.1"
/db_xref="GI:308067145"
/db_xref="GeneID:9773087"
/translation="MKAGGKSRRKYALRSLRSQLLARTLLILALLLVLIGFLQYFLMK
DFLYRSRAEAMDTQLNSIPADLLIKDSQEQSGVTAPQEQSNRRNNRPGPFLFWPDMSL
ASVDIDGTFQSLSNENGLKPPRLTTEQYHAMQQSKRMRHGYQLITDAQGKEQLVVFRP
LGPPDRSSGLLQMGVSTNSMQEQLINQLRTFILLSLIALAIGLALMLPVLRRTLVPLS
RMVQAVKRIDAGNLAERFDAEQGQYEVDRLAVSFNGMLERLEHSFAAERELQMQMRRF
IADASHELRTPLTSIHGFLEVLLRGAASNPKQLQSALESMYGESKRMNKLVSDLLLLA
KLDRTPELKLEDISLDALLLEMKPQLLMLAGTRKVVFDMTAGIRVLAEGDKIKQVVLN
LFHNAVQHTDMERGVIQVNLSAGKKLVDIQIRDNGPGMSKEQLERIFERFYRGDESRT
RSSGGAGLGLAITQSIVEAHGGNITAESTPGTGSVFKVTLPLAGTV"
misc_feature 374960..375103
/locus_tag="PPE_00330"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(374960..374962,374969..374974,374978..374983,
374990..374995,374999..375001,375050..375055,
375059..375064,375071..375076,375080..375085,
375092..375097)
/locus_tag="PPE_00330"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 375134..375292
/locus_tag="PPE_00330"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(375146..375148,375158..375160,375170..375172,
375179..375181,375191..375193,375200..375202,
375254..375256,375266..375268,375275..375277,
375287..375289)
/locus_tag="PPE_00330"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 375164..375166
/locus_tag="PPE_00330"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 375476..375790
/locus_tag="PPE_00330"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(375494..375496,375506..375508,375515..375517,
375587..375589,375593..375595,375599..375601,
375605..375610,375689..375700,375746..375748,
375752..375754,375767..375772,375776..375778)
/locus_tag="PPE_00330"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 375506..375508
/locus_tag="PPE_00330"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(375599..375601,375605..375607,375689..375691,
375695..375697)
/locus_tag="PPE_00330"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(375895..380181)
/locus_tag="PPE_00331"
/db_xref="GeneID:9773088"
CDS complement(375895..380181)
/locus_tag="PPE_00331"
/note="COGMatches:COG1404; PfamMatches:PF00082, PF02225,
PF00395; PrositeMatches:PS01072, PS00136, PS00137,
PS00138; go_process: proteolysis (GO:0006508)"
/codon_start=1
/transl_table=11
/product="subtilisin-like serine protease"
/protein_id="YP_003868751.1"
/db_xref="GI:308067146"
/db_xref="GeneID:9773088"
/translation="MKKPIILQKIPVVSLALALTVSLSLPSVSSAATADLQINSFLEA
QQALTIEAAPAFISPELSTNSSRQVRVIVQLDGEPLAVDKYAARSGVQAFTAQSEQKA
ESAIATEQTTFVDQAAEHGISLQVNYQYNTVLNGLEITLPANKIPELAKLPGVKSIHE
NKTYYSIPVQDPPTLTASEATYDNAPLDQIGVPEAWAKGLHGEGIKVGVIDTGIDYEH
PDLKEAYKGGYDSFEQDNDPYEEPFLEKENDPYGTGFSGTTHGTHVSGTIAGKAANKS
SDIVQKGIAYKSDLYVYKVLGRNTKTGRSSGSSAQVIDGIEHAVKDGMNVINLSLGSD
SEKDPNSPDSIAINNAVLSGVVAVIANGNAAQDGPYFYSMGSPATSQLAISVGAATSP
SKSFSGTASVTRDSYWEANGELKKTVTNDAYAHYDFNLMGWETGREDFASILGTAPYE
LVYANLGQPDDFEGKDVAGKIVLVSRGNLAFVDKIANAKKNGAKAVIVFNGNTKAGDI
TKADLGESISGRDDYVNSNLGDSFDFIPTFDMKGKEGRALAKQLVDNAGEKFSVSFGA
DYIRTDNAGDTMAGFSSRGPNGDELLSIKPDVSAPGVGILSTYPAFAKFYPDASYEQA
YKRSNGTSMASPHVAGLAVLLKQQHPNWTPFDIRAALANTSVTLFDEDKIQYDVYSQG
AGLVNIANAIQTPALLETVEKITILDKNFNRQEVVNYNPSASFGVLRPGSDAKQIQLQ
LKNLSANTVQYEASTVLHDNVTSDPTKPIATPDVSNIAVQLQGVGANGAISAEPGKSQ
PFFLSVQPNSGAATGVYEGEVILKSAGLPTLHLPFVVHVGKENPTTGFGLQDLSVTNP
IIYPSRTGAQRSTDLAFRLTTDKTNQIALYVYGLDDKLIGLIDGITTSKEQGANARLK
QGAYSFKGIDGSYVELDDNGKPVLDANGQPVIQHLKDGVYKLEVSSPELNEKGEVVRN
ADGPKLFTATKAIRVDNSAASSGSGGGGGGGGRSNTTASAATNTSTPVSTSAPSLQSV
VKQGQAVKTVTTAVALNNKVQSLTVTDADLQAAVTAVGSSPTAIVLSATSQAGQTTKA
SLTSTQLATLGKAAAGSSLIVSNTGSSLALPVSALKNVPAGAGIEVIISSQAEASGTF
TGKLKGSNVIGTPVGFEANVVTGGKSQLLKVDPGQFISRSFTVPGQIDSNTAGVLYTA
NGNVYPVPSVFTKQADGSTVVKVSRSGFSTYAAATRPVSFEDISSSYAQSEIQSLANK
LLINGTTDTTFSPKKNVTRAEFAALVTRALGLTPGTAAPFSDIPAGSWYSGDVAAAYE
AGLITGRSSDKFDPNANISRQEIAVVLGKAVDLLQIKAAADGPARTPYHDASSFAGYA
KDSIEKVSAAGIINGEAIKGSSYFQPNAPTTREASAKVLHGLLQKASLIN"
misc_feature complement(379687..379887)
/locus_tag="PPE_00331"
/note="Peptidase inhibitor I9; Region: Inhibitor_I9;
pfam05922"
/db_xref="CDD:203351"
misc_feature complement(<378997..379578)
/locus_tag="PPE_00331"
/note="Peptidase S8 family domain in Vpr-like proteins;
Region: Peptidases_S8_subtilisin_Vpr-like; cd07474"
/db_xref="CDD:173800"
misc_feature complement(order(379093..379095,379186..379194,
379390..379392,379549..379551))
/locus_tag="PPE_00331"
/note="putative active site [active]"
/db_xref="CDD:173800"
misc_feature complement(order(379390..379392,379549..379551))
/locus_tag="PPE_00331"
/note="catalytic triad [active]"
/db_xref="CDD:173800"
misc_feature complement(378415..378837)
/locus_tag="PPE_00331"
/note="PA: Protease-associated (PA) domain. The PA domain
is an insert domain in a diverse fraction of proteases.
The significance of the PA domain to many of the proteins
in which it is inserted is undetermined. It may be a
protein-protein interaction domain; Region: PA; cl08238"
/db_xref="CDD:208827"
misc_feature complement(378604..378612)
/locus_tag="PPE_00331"
/note="PA/protease or protease-like domain interface
[polypeptide binding]; other site"
/db_xref="CDD:80341"
misc_feature complement(378109..>378516)
/locus_tag="PPE_00331"
/note="Peptidase S8 family domain in Vpr-like proteins;
Region: Peptidases_S8_subtilisin_Vpr-like; cd07474"
/db_xref="CDD:173800"
misc_feature complement(376327..376455)
/locus_tag="PPE_00331"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature complement(376150..376281)
/locus_tag="PPE_00331"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 380544..381479
/locus_tag="PPE_00332"
/db_xref="GeneID:9773089"
CDS 380544..381479
/locus_tag="PPE_00332"
/EC_number="3.6.1.1"
/note="COGMatches:COG1227; PfamMatches:PF01368, PF02833;
go_component: cytoplasm (GO:0005737)"
/codon_start=1
/transl_table=11
/product="manganese-dependent inorganic pyrophosphatase
(Pyrophosphate phospho-hydrolase)"
/protein_id="YP_003868752.1"
/db_xref="GI:308067147"
/db_xref="GeneID:9773089"
/translation="MLAKTLIFGHKNPDTDTICSAIAYADLKTKLGADVEPVRLGEVN
GETQYALDYFKVSAPRLVEQVAAETDNVILVDHNERQQSAADIDKVRVTEVIDHHRIA
NFETSQPLYFRAEPVGCTATILNKLYKENGVAIPKEIAGLMLSAIISDSLLFKSPTCT
DQDVTAARELAEIAGVDADRYGFDLLKAGADLSGHTIEQLVSLDAKEFQMNGRKVEIA
QVNAVDVNDVLSRQADLEAALSQTIEAKNLDLFLFVVTDIVNSDSIGIALGSQAQAVE
KAYNVQLDDNKAVLKGVVSRKSQIVPVLTDAFNSL"
misc_feature 380553..381473
/locus_tag="PPE_00332"
/note="putative manganese-dependent inorganic
pyrophosphatase; Provisional; Region: PRK05427"
/db_xref="CDD:180074"
misc_feature 380574..>380762
/locus_tag="PPE_00332"
/note="The CBS domain, named after human CBS, is a small
domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range of
different proteins. CBS domains usually occur in tandem
repeats. They associate to form a so-called...; Region:
CBS_pair; cl15354"
/db_xref="CDD:210083"
misc_feature 381093..381467
/locus_tag="PPE_00332"
/note="DHHA2 domain; Region: DHHA2; pfam02833"
/db_xref="CDD:202421"
gene complement(381540..382463)
/locus_tag="PPE_00333"
/db_xref="GeneID:9773090"
CDS complement(381540..382463)
/locus_tag="PPE_00333"
/note="COGMatches:COG0657; PfamMatches:PF07859"
/codon_start=1
/transl_table=11
/product="esterase/lipase"
/protein_id="YP_003868753.1"
/db_xref="GI:308067148"
/db_xref="GeneID:9773090"
/translation="MVRRLRQKLFVKLARISAGRMVAASDFKPSHSPKVHRKERIIPT
SVGDSRVIVYEPSYRSANPLPVFVNFHGSGFVMGSAEMDDPWCPVIAERANCVVVNVD
YRLAPEHKFPIPLQESYEVTQWLYKHPDVLNVDPQRIAVGGHSAGGNLAAALCLMARE
RKEFPIVYQVLDYPPLDIATDPKLKPQFEKGIPPRVAKIFNESYLHSPDEARNPLVSP
IFAESLHNLPPALIITAELDSLADEAELYAKRLIEADVPVTYKKYMGAAHAFTHSGDL
AVAENAWHLMSDQLKLAFEFRIGDVLAELKK"
misc_feature complement(<381972..382307)
/locus_tag="PPE_00333"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
misc_feature complement(381648..382265)
/locus_tag="PPE_00333"
/note="alpha/beta hydrolase fold; Region: Abhydrolase_3;
pfam07859"
/db_xref="CDD:203783"
misc_feature complement(order(382017..382019,382026..382034,
382242..382250))
/locus_tag="PPE_00333"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29383"
misc_feature complement(381654..>382106)
/locus_tag="PPE_00333"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene complement(382448..382990)
/locus_tag="PPE_00334"
/db_xref="GeneID:9773091"
CDS complement(382448..382990)
/locus_tag="PPE_00334"
/note="COGMatches:COG1846; PfamMatches:PF01047;
PrositeMatches:PS50995; go_component: intracellular
(GO:0005622)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_003868754.1"
/db_xref="GI:308067149"
/db_xref="GeneID:9773091"
/translation="MFFFLDSEIRQLAYNLFPGGNKPIGVLVDLFSITYEIRKNMEKR
SREFGLSYGQYIALCVLSAQRNEMSSPSALAEKMGVSRAAISSMVISLEQEGFINKYD
DPNDKRGVFVSLNDKGRSKIKQMDPFFVGLASRLMSDFSESEICQFQTYLSRVRSAFE
DVKGSRLTDSREEREKWCED"
misc_feature complement(382556..382855)
/locus_tag="PPE_00334"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature complement(382661..382843)
/locus_tag="PPE_00334"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
gene complement(383103..384065)
/locus_tag="PPE_00335"
/db_xref="GeneID:9773092"
CDS complement(383103..384065)
/locus_tag="PPE_00335"
/note="COGMatches:COG1793; PfamMatches:PF01068, PF04679;
PrositeMatches:PS00697, PS50160; go_process: DNA
recombination (GO:0006310)"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA ligase"
/protein_id="YP_003868755.1"
/db_xref="GI:308067150"
/db_xref="GeneID:9773092"
/translation="MRTELKPVIPFEPELSEKVPVDPGLWRYEIKWDGTRIMTYHNQG
STRLFNRKQHERTLLYPELALFPSYCKADSVILDGEMIALGADGKPSFHEIMRRDLIR
RTDRIQSAYEAVPATYMLFDIVYLNGEWVHLKPLQERLELLHQIIIPNERIQLAPAHP
DGQALFQVMCSQGMEGIVCKKLDSPYTLGGKDERWVKVKNYGDIIAVIGGYTLNGGII
NAVLLGQYDKQGMLRYIGHVGTGKLTREDWRQLTERLLPHTISERPFSNKPDRHQDAF
WVQPMYTAKVQYSEWRWQEGRTLRQPSIQAFVNQGLDQCIGPWI"
misc_feature complement(383463..384044)
/locus_tag="PPE_00335"
/note="Adenylation domain of Mycobacterium tuberculosis
LigD and LigC-like ATP-dependent DNA ligases; Region:
Adenylation_DNA_ligase_LigD_LigC; cd07906"
/db_xref="CDD:185715"
misc_feature complement(383145..384023)
/locus_tag="PPE_00335"
/note="DNA polymerase LigD, ligase domain; Region:
NHEJ_ligase_lig; TIGR02779"
/db_xref="CDD:163015"
misc_feature complement(order(383475..383477,383481..383483,
383526..383528,383532..383534,383541..383543,
383703..383705,383790..383792,383826..383828,
383913..383915,383958..383966,383970..383981))
/locus_tag="PPE_00335"
/note="active site"
/db_xref="CDD:185715"
misc_feature complement(order(383469..383471,383475..383477,
383541..383543,383772..383780,383787..383792,
383898..383900,383904..383906,383910..383918,
383958..383966,383973..383975))
/locus_tag="PPE_00335"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:185715"
misc_feature complement(383145..383450)
/locus_tag="PPE_00335"
/note="The Oligonucleotide/oligosaccharide binding
(OB)-fold domain of ATP-dependent DNA ligase LigD is a
DNA-binding module that is part of the catalytic core
unit; Region: OBF_DNA_ligase_LigD; cd07971"
/db_xref="CDD:153440"
misc_feature complement(order(383157..383159,383163..383168,
383172..383174,383331..383339,383343..383351,
383355..383360,383409..383411))
/locus_tag="PPE_00335"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:153440"
gene 384259..384534
/locus_tag="PPE_00336"
/db_xref="GeneID:9773093"
CDS 384259..384534
/locus_tag="PPE_00336"
/note="COGMatches:COG2388; PfamMatches:PF00583;
go_fucntion: N-acetyltransferase activity (GO:0008080)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868756.1"
/db_xref="GI:308067151"
/db_xref="GeneID:9773093"
/translation="MRQIREEDHAVVMVDDGQVVAEVGYKSIDDHSLVIDHTFVSEQL
RGQKIGKELIDRVVDMARNQHKKVIPACSYALALFKRHQEYSDVWQQ"
misc_feature 384289..384465
/locus_tag="PPE_00336"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(384370..384378,384406..384411)
/locus_tag="PPE_00336"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 384826..385392
/locus_tag="PPE_00337"
/db_xref="GeneID:9773094"
CDS 384826..385392
/locus_tag="PPE_00337"
/note="COGMatches:COG2322; PfamMatches:PF04238"
/codon_start=1
/transl_table=11
/product="membrane protein"
/protein_id="YP_003868757.1"
/db_xref="GI:308067152"
/db_xref="GeneID:9773094"
/translation="MMNKASEDKQYVPTSNRNFTALIITVSIIANVIILLLFFSPIGY
QGSVSFDLTIFPRLNAIFNSFTFIFLVAALVAIFKKNIKLHKTFVLLAFASTVLFLFS
YLTFHYISPETAKYGGVGILRPIYFTLLISHSILAAIIVPLALFTVVWGWTMQVAKHR
KIARWTMPIWLYVSLTGVLVYVFMAPYY"
misc_feature 384979..385377
/locus_tag="PPE_00337"
/note="Protein of unknown function (DUF420); Region:
DUF420; pfam04238"
/db_xref="CDD:146725"
gene 385576..386850
/locus_tag="PPE_00338"
/db_xref="GeneID:9773095"
CDS 385576..386850
/locus_tag="PPE_00338"
/note="COGMatches:COG1653; PfamMatches:PF01547;
go_process: transport (GO:0006810)"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter periplasmic protein"
/protein_id="YP_003868758.1"
/db_xref="GI:308067153"
/db_xref="GeneID:9773095"
/translation="MTKKAKGRLRLLVSMLALVVLLSSCGGGGSKSEKVDGGKVTLQF
WTIALQPTFTPYFNRVIADYEQKNPNVKIDWKDYPYDAVTNKLLTSIASNSSPDVVNL
NTEFASQMGSKGAVVDMNEHLSPEEKAAYFEGIYNSTVINGKAYALPWYTGTEVLYMN
TKLVKAAGLDPAHPPKTREELSQWGRQINRKIGKAGYAQQLVSKLFAVDGIPILNKEK
TAAAFNTPEAVTMIDKLKKQMEDGVVLKEDADFSQQVKYYAGEQVAFELAGPTFINFI
KTAAPDVYKNTIAVPVPTGKADVRLSNSMDLVVPVKSAHVDEAVKFAVFLTNAESQTA
FSKAANTLPSTKDSIKDPYFTQSDKSLEAQAKVVSAQSLDKATDYMVGVPNAKDVNSA
IARALQNILLNGTDTKQTLTALEQEVNDILKQ"
misc_feature 385681..386847
/locus_tag="PPE_00338"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
misc_feature 385741..386571
/locus_tag="PPE_00338"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:201851"
gene 386913..387794
/locus_tag="PPE_00339"
/db_xref="GeneID:9773096"
CDS 386913..387794
/locus_tag="PPE_00339"
/note="COGMatches:COG1175; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_003868759.1"
/db_xref="GI:308067154"
/db_xref="GeneID:9773096"
/translation="MIKWLRSESFTAWAFMTPGLLLLAVFVFWPIIYSIPLALTDYSV
ISDTHFVGLDNFEAAFKDRNFLISIWNSLLYVLIVPFLQIFSILMAVLVNSRIPGIKI
FRTSYYIPVVTSMVAVALIWSWLLGNNSVVNYLLMQVGLISKDIHWLSDSNLALYVLM
FITMWKGLGYYMMLYLAGLQNIPQDLYEAARVDGASRWRLIVHITLPLLRPYVLFCTL
ISLMSAIRVFDEVYVLTKGGPGTATLTSSLYIFQKGMEQFNFGYASALGLIVGAMIAV
LSIIVFRFNRKGGVNPY"
misc_feature 386913..387773
/locus_tag="PPE_00339"
/note="ABC-type polysaccharide transport system, permease
component [Carbohydrate transport and metabolism]; Region:
LplB; COG4209"
/db_xref="CDD:33938"
misc_feature 387117..387722
/locus_tag="PPE_00339"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(387162..387167,387174..387179,387192..387194,
387219..387230,387234..387263,387270..387275,
387279..387281,387402..387407,387414..387416,
387420..387422,387429..387434,387438..387440,
387450..387455,387462..387464,387513..387515,
387555..387560,387567..387569,387588..387599,
387606..387611,387648..387653,387681..387686,
387693..387698,387702..387707,387714..387719)
/locus_tag="PPE_00339"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(387237..387281,387588..387605)
/locus_tag="PPE_00339"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(387279..387281,387387..387389,387606..387608,
387642..387644,387651..387653,387681..387683)
/locus_tag="PPE_00339"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(387465..387503,387519..387524,387534..387536)
/locus_tag="PPE_00339"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 387791..388684
/locus_tag="PPE_00340"
/db_xref="GeneID:9773097"
CDS 387791..388684
/locus_tag="PPE_00340"
/note="COGMatches:COG0395; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_003868760.1"
/db_xref="GI:308067155"
/db_xref="GeneID:9773097"
/translation="MMNLKNDKMLRSSLPKKESSRIMRSLARMLRMTVIYVLLVLLAL
FLMGPFLWLLSVSLMPGRNIFSTPPAIFPTFIDFDNYVQVWQFMNFPKYMLNTVIITV
LGVVLNVVLASLTGYPLAVFRFKGKNLVFTLLIATMIIPSYTAFIVHYLTIQGLHLGN
TYLGVVLPGAVSVFNIFLMRQTFIHIPTDVRDSGKMDGASEFRIWWQLVLPLVKPALA
VISLLEAMSFWNSFLWPIVILNDTELYPLAAALTYLNGQFAYNFGWIAAGTMISVLPI
IILFLFTQRYYMEGLAGAVKG"
misc_feature 387953..388678
/locus_tag="PPE_00340"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 388070..388621
/locus_tag="PPE_00340"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(388118..388123,388130..388135,388148..388150,
388178..388189,388193..388222,388229..388234,
388238..388240,388304..388306,388310..388312,
388319..388324,388328..388330,388340..388345,
388352..388354,388403..388405,388445..388450,
388457..388459,388478..388489,388496..388501,
388538..388543,388571..388576,388583..388588,
388592..388597,388604..388609,388616..388621)
/locus_tag="PPE_00340"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(388196..388240,388478..388495)
/locus_tag="PPE_00340"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(388238..388240,388298..388300,388496..388498,
388532..388534,388541..388543,388571..388573)
/locus_tag="PPE_00340"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(388355..388393,388409..388414,388424..388426)
/locus_tag="PPE_00340"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 388735..390561
/locus_tag="PPE_00341"
/db_xref="GeneID:9773098"
CDS 388735..390561
/locus_tag="PPE_00341"
/note="PfamMatches:PF07555"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868761.1"
/db_xref="GI:308067156"
/db_xref="GeneID:9773098"
/translation="MKLSKGMGPHSGAGLTPQEIQYYFRDVYDSGERLIISEPHLICE
LSSRFAMNQEYEGVLDPEGPIKLIVPPGPGVPTETRGSVQLVLEYDGTLAADGYRLDI
QKDGRIEVHASNKRGLKYGMDALHLLLQLEQERCTLPVMSIRDEPSFPVRGIIEGFYG
KTWSFADRLDAVRFMAAHRMNTFMYAPKDDPYHRELWREPYPEDTFAQIRELKEACER
HEIDFHYCISPGNDLSFGSDEDFLKLTEKLAAVIAIGVRHFSVLMDDIDYVLKGENRH
LLGRSGHAHVFLTNKVHTWLAERLPEFTLTVCPSEYWSYWDTEYKKDFRERLHPEIKV
FWTGYFVFAPQISREHAADNHAFFGHELWLWDNIPVNDCDHDRLFLDPLRGRYSGLPD
CGHTGMVANPMNQWECSKVTLITMSHFMWNSERYMPELSWEWAARELAGERADELMFF
CRQNRNSRLGGNTYEDVNLALQMRDIPALDMYFERLLQAVSVLRNVPADDLAAGFVSQ
AAPWLERAELDAGLWHVLRQAVLSSERQDDVQPGESSTPSKAVDGQEPSPLTDEIAGK
LRRGITACLEAEARLGSNPAIRAAAQWGYVDQDEQGKYRLIL"
misc_feature 389188..390096
/locus_tag="PPE_00341"
/note="beta-N-acetylglucosaminidase; Region: NAGidase;
pfam07555"
/db_xref="CDD:203681"
gene 390662..392200
/locus_tag="PPE_00342"
/db_xref="GeneID:9773099"
CDS 390662..392200
/locus_tag="PPE_00342"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868762.1"
/db_xref="GI:308067157"
/db_xref="GeneID:9773099"
/translation="MKPNTRLLFIPLDERPCNYQFPYLLAQGTDLEMERPPLEWMGQK
KTPGDTTRLWAWLEERAATADGAIVAMDTLLYGGIVPSRLHGMSSEQVRDRVNRLRRL
KQLYPQLTLYAFQLIMRCPQYSLADEEPDYYADWGREIFRKGFIEHRQELGIATAEEL
LEFTDIKERLPMEILDDYLGRRHVNLEANEVALDLVAEGIIDFMIIPQDDSAPYGYTA
KDQQRLRSRISELGLDLNVYMYPGADEVGCTLLARWVNKMNNVVPLVYPRLSALQGAF
VVPLFEDRYFYETLKYQIMAAGGLIASSATEADLILLANTPGDTMAEASSQQRAMTGY
DVHRNVVELVEYGSYMLQYANQNVAVADVGYANGADLKLLRLLKQKGLLFKLAGYAGW
NTSSNTLGTVIAQSMLYTHYGSTEEHLDFLSLRYAEDACYCAVVRTAMNNGIVEQMGF
TKFMLDGPRGSVAAVIRGRLEQALDEYVNGPEGRVEITDCYMPWNRTFEVGLTVRHHA
EKRG"
misc_feature 390677..392173
/locus_tag="PPE_00342"
/note="Protein of unknown function (DUF4127); Region:
DUF4127; pfam13552"
/db_xref="CDD:205730"
gene 392206..392925
/locus_tag="PPE_00343"
/db_xref="GeneID:9773100"
CDS 392206..392925
/locus_tag="PPE_00343"
/EC_number="5.1.3.9"
/note="COGMatches:COG3010; PfamMatches:PF04131;
go_process: N-acetylmannosamine metabolism (GO:0006051)"
/codon_start=1
/transl_table=11
/product="N-acetylmannosamine-6-phosphate 2-epimerase
(ManNAc-6-P epimerase)"
/protein_id="YP_003868763.1"
/db_xref="GI:308067158"
/db_xref="GeneID:9773100"
/translation="MGMEGVLSKVQHGLIVSCQALPGEPLHGADSMVKMACAAQQGGA
VAIRANGASDVRAIKQAISLPVIGLIKRDYDDSDIYITPTLREMEELVEAGADIIALD
ATLRPRPAGCKLKRLLDYAHEQGVTSMADISTLEEALHAASLGADCVSTTLSGYTPYS
TQIEGPDLELVRRASELVPVPLIAEGKIYDPAQVEEAFRMGAHAVVVGSAITRPQLIT
QRFADAARKAVKCIYGDERPN"
misc_feature 392221..392868
/locus_tag="PPE_00343"
/note="N-acetylmannosamine-6-phosphate epimerase (NanE)
converts N-acetylmannosamine-6-phosphate to
N-acetylglucosamine-6-phosphate. This reaction is part of
the pathway that allows the usage of sialic acid as a
carbohydrate source. Sialic acids are a family of...;
Region: NanE; cd04729"
/db_xref="CDD:73391"
misc_feature 392230..392886
/locus_tag="PPE_00343"
/note="N-acetylmannosamine-6-phosphate 2-epimerase;
Provisional; Region: PRK01130"
/db_xref="CDD:179231"
misc_feature order(392254..392256,392260..392262,392347..392349,
392410..392412,392416..392418,392509..392511,
392596..392598,392659..392661,392671..392673,
392758..392766,392827..392829)
/locus_tag="PPE_00343"
/note="putative active site cavity [active]"
/db_xref="CDD:73391"
gene 392903..393742
/locus_tag="PPE_00344"
/db_xref="GeneID:9773101"
CDS 392903..393742
/locus_tag="PPE_00344"
/note="COGMatches:COG1737; PfamMatches:PF01418, PF01380;
PrositeMatches:PS51071; go_process: regulation of
transcription, DNA-dependent (GO:0006355), go_process:
carbohydrate metabolism (GO:0005975)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_003868764.1"
/db_xref="GI:308067159"
/db_xref="GeneID:9773101"
/translation="MEMNDRINTYYPSLTKSEQKVALCVLGNPADIIYFSVTELADFA
GTGETTVMRFCRKIGFKGYQDFRLSLAQNQTYRKTDMGEENIDPDDEQDITRTVYHNM
LDILHSSMGLLDHSELGRAIACLDQAGYVQFFGVGASGISAQDAKNRFLRIGRRAEAV
ADGHIQSMMAVSMNPGDVAIGISVSGSTLDTNDMLHKAKQNGATVIAITNYAKSPITS
IADIVLLTAGKEAPIEGGSIGAKISQLFVIDLICEGLARKHTSHTKQMKEKTARAVIE
RSY"
misc_feature 392903..393724
/locus_tag="PPE_00344"
/note="Transcriptional regulators [Transcription]; Region:
RpiR; COG1737"
/db_xref="CDD:31923"
misc_feature 392903..393118
/locus_tag="PPE_00344"
/note="Helix-turn-helix domain, rpiR family; Region:
HTH_6; pfam01418"
/db_xref="CDD:201784"
misc_feature 393248..393655
/locus_tag="PPE_00344"
/note="RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E. coli,
rpiR negatively regulates the expression of rpiB gene.
Both rpiB and rpiA are ribose phosphate...; Region:
SIS_RpiR; cd05013"
/db_xref="CDD:88408"
misc_feature order(393317..393319,393449..393451)
/locus_tag="PPE_00344"
/note="putative active site [active]"
/db_xref="CDD:88408"
gene 393873..394835
/locus_tag="PPE_00345"
/db_xref="GeneID:9773102"
CDS 393873..394835
/locus_tag="PPE_00345"
/note="COGMatches:COG1940; PfamMatches:PF00480"
/codon_start=1
/transl_table=11
/product="transcriptional regulator/sugar kinase"
/protein_id="YP_003868765.1"
/db_xref="GI:308067160"
/db_xref="GeneID:9773102"
/translation="MWGNKEVGVVAAAVNRVIGIDIGGTSVKAAIVARDGSVLDEIRL
DTNASGGREWVLSRVSESVLGLLRPFGDTSIGAHIDVGALGIATAGRVNVESGEVVYA
TDNLPGWQGTSLVTWAREKLALRAVADNDANAALLGEAWQGAGKGKRRLVMLTLGTGV
GGAYMENGLLCRGAYWSGGDWGHSILFPGGHPCNCGKKGCAEQYVSGSALLRRGREHV
GKLYRSGNEIVKEAAHGNQEAIQVLDDYTADLAVLLANISVTLDPEGIIVGGGVADAG
EVWWPMLEKHLHQLGVQTEVSRALLGNRAGIIGAARLAFEMIES"
misc_feature 393918..394820
/locus_tag="PPE_00345"
/note="Transcriptional regulator/sugar kinase
[Transcription / Carbohydrate transport and metabolism];
Region: NagC; COG1940"
/db_xref="CDD:32123"
misc_feature 393924..>394178
/locus_tag="PPE_00345"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature order(393933..393944,393948..393950,393954..393956)
/locus_tag="PPE_00345"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
misc_feature <394446..394811
/locus_tag="PPE_00345"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 394861..396471
/locus_tag="PPE_00346"
/db_xref="GeneID:9773103"
CDS 394861..396471
/locus_tag="PPE_00346"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868766.1"
/db_xref="GI:308067161"
/db_xref="GeneID:9773103"
/translation="MTQKRLDTDIVVIGGGLGGTSAALAAAKAGMRVIVTEETDWLGG
QLTSQAVPPDEHRWIEQFGCTATYREFRNRVRNYYRQNYPLTEEALNNPILNPGNGWV
SRLAHEPRVALRVLEDMLAPYLNTGRVHVYYHTVPIAVQTDGDCIASVTVRTSNSADH
KCGFRVLHGTFYLDATECGDLLPMAGVEHTSGAESRAATGEPHALECANPFDMQSITH
VAAVDYIPQESFIIERPQQYDFWRNYIPSFSRFPILSWFATDADDTSKLKQFTLFPND
QGIVSLWDYRRIVDPSIWSKPLNDGEVTLLNWAQNDYYLGPLIGVTAQEQAKHREGAR
ELTRSLIYWLQTEAPRLDGGFGYPGIRPRGDILGTSDGLAKTAYIRESRRIQAKYMIS
EFDVSRELRGEEGPKRYIDSVGVGSYHLDLHPTTVSQRTFYIPNYPYEIPLRSLIPVR
VRNLLPACKNIGMTQIANGCYRLHPTEWNIGESAGSLAAYCVSNEVYPIEVSRSAEHL
GCFQNVLLRQGVELHWPAEVFEPEGVIS"
misc_feature 394885..396375
/locus_tag="PPE_00346"
/note="FAD dependent oxidoreductase; Region: FAD_oxidored;
pfam12831"
/db_xref="CDD:205095"
gene 396895..398400
/locus_tag="PPE_00347"
/db_xref="GeneID:9773104"
rRNA 396895..398400
/locus_tag="PPE_00347"
/product="16S ribosomal RNA"
/db_xref="GeneID:9773104"
gene 398768..401693
/locus_tag="PPE_00348"
/db_xref="GeneID:9773105"
rRNA 398768..401693
/locus_tag="PPE_00348"
/product="23S ribosomal RNA"
/db_xref="GeneID:9773105"
gene 401774..401890
/locus_tag="PPE_04955"
/db_xref="GeneID:9773106"
rRNA 401774..401890
/locus_tag="PPE_04955"
/product="5S ribosomal RNA"
/db_xref="GeneID:9773106"
gene 401927..402003
/locus_tag="PPE_00349"
/db_xref="GeneID:9773107"
tRNA 401927..402003
/locus_tag="PPE_00349"
/product="tRNA-Ile"
/db_xref="GeneID:9773107"
gene 402026..402101
/locus_tag="PPE_00350"
/db_xref="GeneID:9773108"
tRNA 402026..402101
/locus_tag="PPE_00350"
/product="tRNA-Ala"
/db_xref="GeneID:9773108"
gene 402106..402181
/locus_tag="PPE_00351"
/db_xref="GeneID:9773109"
tRNA 402106..402181
/locus_tag="PPE_00351"
/product="tRNA-Asn"
/db_xref="GeneID:9773109"
gene 402216..402289
/locus_tag="PPE_00352"
/db_xref="GeneID:9773110"
tRNA 402216..402289
/locus_tag="PPE_00352"
/product="tRNA-Met"
/db_xref="GeneID:9773110"
gene 402293..402384
/locus_tag="PPE_00353"
/db_xref="GeneID:9773111"
tRNA 402293..402384
/locus_tag="PPE_00353"
/product="tRNA-Ser"
/db_xref="GeneID:9773111"
gene 402417..402488
/locus_tag="PPE_00354"
/db_xref="GeneID:9773112"
tRNA 402417..402488
/locus_tag="PPE_00354"
/product="tRNA-Glu"
/db_xref="GeneID:9773112"
gene 402495..402570
/locus_tag="PPE_00355"
/db_xref="GeneID:9773113"
tRNA 402495..402570
/locus_tag="PPE_00355"
/product="tRNA-Val"
/db_xref="GeneID:9773113"
gene 402601..402674
/locus_tag="PPE_00356"
/db_xref="GeneID:9773114"
tRNA 402601..402674
/locus_tag="PPE_00356"
/product="tRNA-Met"
/db_xref="GeneID:9773114"
gene 402700..402776
/locus_tag="PPE_00357"
/db_xref="GeneID:9773115"
tRNA 402700..402776
/locus_tag="PPE_00357"
/product="tRNA-Asp"
/db_xref="GeneID:9773115"
gene 402843..402918
/locus_tag="PPE_00358"
/db_xref="GeneID:9773116"
tRNA 402843..402918
/locus_tag="PPE_00358"
/product="tRNA-Phe"
/db_xref="GeneID:9773116"
gene 402942..403017
/locus_tag="PPE_00359"
/db_xref="GeneID:9773117"
tRNA 402942..403017
/locus_tag="PPE_00359"
/product="tRNA-Thr"
/db_xref="GeneID:9773117"
gene 403022..403107
/locus_tag="PPE_00360"
/db_xref="GeneID:9773118"
tRNA 403022..403107
/locus_tag="PPE_00360"
/product="tRNA-Tyr"
/db_xref="GeneID:9773118"
gene 403127..403199
/locus_tag="PPE_00361"
/db_xref="GeneID:9773119"
tRNA 403127..403199
/locus_tag="PPE_00361"
/product="tRNA-His"
/db_xref="GeneID:9773119"
gene 403217..403291
/locus_tag="PPE_00362"
/db_xref="GeneID:9773120"
tRNA 403217..403291
/locus_tag="PPE_00362"
/product="tRNA-Gln"
/db_xref="GeneID:9773120"
gene 403296..403371
/locus_tag="PPE_00363"
/db_xref="GeneID:9773121"
tRNA 403296..403371
/locus_tag="PPE_00363"
/product="tRNA-Lys"
/db_xref="GeneID:9773121"
gene 403386..403472
/locus_tag="PPE_00364"
/db_xref="GeneID:9773122"
tRNA 403386..403472
/locus_tag="PPE_00364"
/product="tRNA-Leu"
/db_xref="GeneID:9773122"
gene 403479..403553
/locus_tag="PPE_00365"
/db_xref="GeneID:9773123"
tRNA 403479..403553
/locus_tag="PPE_00365"
/product="tRNA-Gly"
/db_xref="GeneID:9773123"
gene 403564..403634
/locus_tag="PPE_00366"
/db_xref="GeneID:9773124"
tRNA 403564..403634
/locus_tag="PPE_00366"
/product="tRNA-Cys"
/db_xref="GeneID:9773124"
gene 403661..403737
/locus_tag="PPE_00367"
/db_xref="GeneID:9773125"
tRNA 403661..403737
/locus_tag="PPE_00367"
/product="tRNA-Arg"
/db_xref="GeneID:9773125"
gene 403759..403832
/locus_tag="PPE_00368"
/db_xref="GeneID:9773126"
tRNA 403759..403832
/locus_tag="PPE_00368"
/product="tRNA-Pro"
/db_xref="GeneID:9773126"
gene 403842..403912
/locus_tag="PPE_00369"
/db_xref="GeneID:9773127"
tRNA 403842..403912
/locus_tag="PPE_00369"
/product="tRNA-Gly"
/db_xref="GeneID:9773127"
gene complement(404112..405215)
/locus_tag="PPE_00370"
/db_xref="GeneID:9773128"
CDS complement(404112..405215)
/locus_tag="PPE_00370"
/note="COGMatches:COG4564; PfamMatches:PF00989, PF07730,
PF02518; PrositeMatches:PS50112, PS50113, PS50109;
go_process: signal transduction (GO:0007165),
go_component: integral to membrane (GO:0016021),
go_fucntion: ATP binding (GO:0005524)"
/codon_start=1
/transl_table=11
/product="signal transduction histidine kinase"
/protein_id="YP_003868767.1"
/db_xref="GI:308067162"
/db_xref="GeneID:9773128"
/translation="MNEPSNPLLQHAFGESTDTLLNDLETYIPESPFLHALRNSLHQL
SNLKFALDTSSIVALTDHRGIIQYVNDKFCEISQYSREELIGQDHRLINSGYHTPAFM
KNLWTTIRSGEVWQGEIRNRAKDNSYYWVNTTIVPFMDEEGKPYQYLAIRNEVTKLKK
VEAELQSMMTQVMQIQEEERKRFSRELHDGIGQSLFSLIIQLDSQLAEQPSAALESLR
SQVTDIIKDVRGLAWELRPSVLDDLGVVPAIRTYIENFCSHYGIEVHFQCTLRKRLDI
RKEIAIYRIVQEALTNVAKYADVAEAYVDVEDQDEMIQVTIRDEGIGFSGKSQGEGVG
LFSMEERARGVGGFISMTSAPDEGTSIQLTIPV"
misc_feature complement(404751..405059)
/locus_tag="PPE_00370"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(404745..405047)
/locus_tag="PPE_00370"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature complement(order(404838..404840,404853..404855,
404931..404942,404979..404981,404997..404999,
405009..405011))
/locus_tag="PPE_00370"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(404811..404813,404817..404819,
404901..404906,404913..404915,404937..404939,
404949..404951))
/locus_tag="PPE_00370"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(404115..404696)
/locus_tag="PPE_00370"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG3920"
/db_xref="CDD:33706"
misc_feature complement(404508..404681)
/locus_tag="PPE_00370"
/note="Histidine kinase; Region: HisKA_3; pfam07730"
/db_xref="CDD:203743"
misc_feature complement(404121..404372)
/locus_tag="PPE_00370"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(404133..404135,404139..404144,
404157..404159,404163..404165,404211..404222,
404244..404249,404253..404255,404259..404261,
404265..404267,404331..404333,404340..404342,
404352..404354))
/locus_tag="PPE_00370"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(404340..404342)
/locus_tag="PPE_00370"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(404214..404216,404220..404222,
404247..404249,404253..404255))
/locus_tag="PPE_00370"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(405208..405861)
/locus_tag="PPE_00371"
/db_xref="GeneID:9773129"
CDS complement(405208..405861)
/locus_tag="PPE_00371"
/note="COGMatches:COG2197; PfamMatches:PF00072, PF00196;
PrositeMatches:PS50110, PS00622, PS50043; go_process:
regulation of transcription, DNA-dependent (GO:0006355),
go_component: intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="DegU family transcriptional regulator"
/protein_id="YP_003868768.1"
/db_xref="GI:308067163"
/db_xref="GeneID:9773129"
/translation="MIRILVVDDHVVVRSGLMALLDGKNGIKVVGDAADGDEAIRKAV
ELQPNVVLMDFSMPPGKDGLTATTELKKQLPDTEVLILTMHDDEEYLFRAIQAGASGY
ILKSAPHEELLAAIQSVAEGSAYLYPNATKRLMSEYLDKIKQEGIAGPYESLSEREKE
ILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLSLKTRPELVKFALKKGLLHYE"
misc_feature complement(405214..405858)
/locus_tag="PPE_00371"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:32379"
misc_feature complement(405502..405849)
/locus_tag="PPE_00371"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(405544..405549,405556..405558,
405613..405615,405673..405675,405700..405702,
405835..405840))
/locus_tag="PPE_00371"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(405700..405702)
/locus_tag="PPE_00371"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(405673..405681,405688..405693))
/locus_tag="PPE_00371"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(405541..405549)
/locus_tag="PPE_00371"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(405232..405402)
/locus_tag="PPE_00371"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature complement(order(405259..405261,405292..405306,
405310..405315,405319..405324,405346..405354,
405391..405399))
/locus_tag="PPE_00371"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature complement(order(405232..405237,405244..405246,
405253..405261,405352..405354,405358..405360,
405364..405366))
/locus_tag="PPE_00371"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene complement(406005..406454)
/locus_tag="PPE_00372"
/db_xref="GeneID:9773130"
CDS complement(406005..406454)
/locus_tag="PPE_00372"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868769.1"
/db_xref="GI:308067164"
/db_xref="GeneID:9773130"
/translation="MLQITDEMRRELNQLRDTIYGDLTALAFMSKSGGKLHWYYASGS
RSNRYRLISFKIGHGIAGMAVRLGRTVTVSALLSGSIRLRQECALMLAEQLHSAVAIP
FSSTGDLPNGVLLLGNRDVRMFTESDVAEATQVAQRLSQLCTYPLTP"
misc_feature complement(406032..406433)
/locus_tag="PPE_00372"
/note="GAF domain; Region: GAF_2; pfam13185"
/db_xref="CDD:205366"
misc_feature complement(406032..406430)
/locus_tag="PPE_00372"
/note="GAF domain; Region: GAF; cl15785"
/db_xref="CDD:210185"
gene 406754..407494
/locus_tag="PPE_00373"
/db_xref="GeneID:9773131"
CDS 406754..407494
/locus_tag="PPE_00373"
/note="COGMatches:COG0664; PfamMatches:PF00027, PF00325;
PrositeMatches:PS50042, PS00042, PS51063; go_component:
intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="Anaerobic regulatory protein"
/protein_id="YP_003868770.1"
/db_xref="GI:308067165"
/db_xref="GeneID:9773131"
/translation="MQATCMERFGDEAERTGIQIYLTEEHFDLLKDIMSWKKVKAGVM
LFREGDDAEQLYYIHSGHVKLRKSTEDGKELILTIQHQGDLIGEFSGIDGEEYSCTAE
TADVCELGVVLVKDLESLLSKNGEMALQFIQWMAMKQRIMQSRFRDLLLYGKTGALAS
TLIRASNTCGVAVKDGILLNMKLSHSELGEMIGATRESVNRMLSALKEQGTLDTRDGK
IVIHDLKVLRAMCCCPSYGQCAHEICRL"
misc_feature 406817..407422
/locus_tag="PPE_00373"
/note="cAMP-binding proteins - catabolite gene activator
and regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms]; Region: Crp; COG0664"
/db_xref="CDD:31008"
misc_feature 406817..407149
/locus_tag="PPE_00373"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:28920"
misc_feature order(407012..407017,407042..407050)
/locus_tag="PPE_00373"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:28920"
misc_feature order(407108..407116,407126..407134)
/locus_tag="PPE_00373"
/note="flexible hinge region; other site"
/db_xref="CDD:28920"
misc_feature 407213..407422
/locus_tag="PPE_00373"
/note="helix_turn_helix, cAMP Regulatory protein
C-terminus; DNA binding domain of prokaryotic regulatory
proteins belonging to the catabolite activator protein
family; Region: HTH_CRP; cd00092"
/db_xref="CDD:28976"
misc_feature 407222..407227
/locus_tag="PPE_00373"
/note="putative switch regulator; other site"
/db_xref="CDD:28976"
misc_feature order(407297..407299,407303..407311,407336..407338)
/locus_tag="PPE_00373"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:28976"
misc_feature 407336..407356
/locus_tag="PPE_00373"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28976"
misc_feature order(407339..407344,407354..407356)
/locus_tag="PPE_00373"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28976"
misc_feature 407339..407344
/locus_tag="PPE_00373"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:28976"
gene 408105..409610
/locus_tag="PPE_00374"
/db_xref="GeneID:9773132"
rRNA 408105..409610
/locus_tag="PPE_00374"
/product="16S ribosomal RNA"
/db_xref="GeneID:9773132"
gene 409986..412911
/locus_tag="PPE_00375"
/db_xref="GeneID:9773133"
rRNA 409986..412911
/locus_tag="PPE_00375"
/product="23S ribosomal RNA"
/db_xref="GeneID:9773133"
gene 413061..413177
/locus_tag="PPE_00376"
/db_xref="GeneID:9773134"
rRNA 413061..413177
/locus_tag="PPE_00376"
/product="5S ribosomal RNA"
/db_xref="GeneID:9773134"
gene 413810..415141
/locus_tag="PPE_00377"
/db_xref="GeneID:9773135"
CDS 413810..415141
/locus_tag="PPE_00377"
/note="COGMatches:COG1653; PfamMatches:PF01547;
PrositeMatches:PS00013; go_process: transport
(GO:0006810)"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter periplasmic protein"
/protein_id="YP_003868771.1"
/db_xref="GI:308067166"
/db_xref="GeneID:9773135"
/translation="MSRTKMKAFAIVMVSALALTLTACNNGQSASPGNSGEPSRGTET
KDVTITFQNINPDPSTPSYKMIKQIVGQYEQDHPHVKIELDSLNTDQQKLKLKTQAAA
KEVPDITIVNPAAQMKPFVDAGLLAPLNDVADKEWLKDTFQNGLLNYYSFDDKLYAFP
DGNNIEVVFYNKELFKQAGIQKLPTTFDELITTVKTLKAKGITPIAIGEKDSWTGSLL
FMNILLRTNEGPNFLNDVLDGKKTFNDPAFVEAVDAFQELVQAGAFPDGATSIDYNAG
GNIFKTGKAAMYIMGTWETGSIDASSVAGKVGAFQFPTVNGKGDVNEYVIAPGSAFAV
SANSEHLQETKDFLHYFISEMPKIQFDLKNAIGSGQKMKGDLKEAGYSELAISLNELF
KNVKGGDLAFDNTMNPAIAQAHLSSIQNLFVQKEDSAQVAKEHQNTFEANK"
misc_feature 413822..415132
/locus_tag="PPE_00377"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
misc_feature 413978..414871
/locus_tag="PPE_00377"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:201851"
gene 415371..416261
/locus_tag="PPE_00378"
/db_xref="GeneID:9773136"
CDS 415371..416261
/locus_tag="PPE_00378"
/note="COGMatches:COG1175; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_003868772.1"
/db_xref="GI:308067167"
/db_xref="GeneID:9773136"
/translation="MNVLKVPARTITVFVLPCLLLYTCMVFVPILVSVYCGLLDWNGI
AEAKFVGLANFERIFTADSVFWPSVKRTMMFAVFSMLEIPFCLLLAILLNRYVRKANT
LVTMYFLPVILSVVIIGQLWKTIYNPASMGGMLNGILLAIGLEGWTRSWLTEPQIAMY
ALYFVSLWQYFGYHLLIQFTGVQNIPNELYEAAKIDGAEGFKADRYITLPLIVPIFKI
SIVLAFIGSLQSFDLIWVMTGGGPAHATDTVSTYMYNMSFLSMKYGYGSALASILVVI
CLSFTIVINFVFKRIENKVS"
misc_feature 415407..416249
/locus_tag="PPE_00378"
/note="ABC-type polysaccharide transport system, permease
component [Carbohydrate transport and metabolism]; Region:
LplB; COG4209"
/db_xref="CDD:33938"
misc_feature 415584..416204
/locus_tag="PPE_00378"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(415620..415625,415632..415637,415650..415652,
415680..415691,415695..415709,415716..415721,
415725..415727,415869..415874,415881..415883,
415887..415889,415896..415901,415905..415907,
415917..415922,415929..415931,415980..415982,
416022..416027,416034..416036,416055..416066,
416073..416078,416121..416126,416154..416159,
416166..416171,416175..416180,416187..416192,
416199..416204)
/locus_tag="PPE_00378"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(415695..415727,416055..416072)
/locus_tag="PPE_00378"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(415725..415727,415854..415856,416073..416075,
416115..416117,416124..416126,416154..416156)
/locus_tag="PPE_00378"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(415932..415970,415986..415991,416001..416003)
/locus_tag="PPE_00378"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 416267..417100
/locus_tag="PPE_00379"
/db_xref="GeneID:9773137"
CDS 416267..417100
/locus_tag="PPE_00379"
/note="COGMatches:COG0395; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868773.1"
/db_xref="GI:308067168"
/db_xref="GeneID:9773137"
/translation="MELLNALKKTGVFSLLAILIVTQLYPLFWLLTYSLKTNEEILSS
SFFALPQVPQWHNYQEAYESGSYLRYLGNSVLVTGVTMIFVILLSSMTAYAITRFRWR
FGAVVLTLFLIGMMIPMQATLLPLMVMFKNVHILNTYFSLILPYIAFQTPIAVFILSG
FMRSIPHEIEESAYIDGASIYRIFRSVILPISIPPIMTVCILTFINIWNEYIMAATFI
SSEKLKTLPFGVYTFVSQYSVNYGNIGAFLVMGALPVIIIYFVLSENITKGMVAGAVK
G"
misc_feature 416285..417094
/locus_tag="PPE_00379"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 416477..417037
/locus_tag="PPE_00379"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(416525..416530,416537..416542,416555..416557,
416585..416596,416600..416629,416636..416641,
416645..416647,416711..416713,416717..416719,
416723..416725,416732..416737,416741..416743,
416753..416758,416765..416767,416816..416818,
416858..416863,416870..416872,416891..416899,
416903..416905,416912..416917,416954..416959,
416987..416992,416999..417004,417008..417013,
417020..417025,417032..417037)
/locus_tag="PPE_00379"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(416603..416647,416891..416899,416903..416911)
/locus_tag="PPE_00379"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(416645..416647,416705..416707,416912..416914,
416948..416950,416957..416959,416987..416989)
/locus_tag="PPE_00379"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(416768..416806,416822..416827,416837..416839)
/locus_tag="PPE_00379"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 417131..418927
/locus_tag="PPE_00380"
/db_xref="GeneID:9773138"
CDS 417131..418927
/locus_tag="PPE_00380"
/note="COGMatches:COG2972; PfamMatches:PF00672, PF06580,
PF02518; PrositeMatches:PS50885; go_component: membrane
(GO:0016020), go_component: integral to membrane
(GO:0016021), go_fucntion: ATP binding (GO:0005524)"
/codon_start=1
/transl_table=11
/product="signal transduction protein with a C-terminal
ATPase domain"
/protein_id="YP_003868774.1"
/db_xref="GI:308067169"
/db_xref="GeneID:9773138"
/translation="MMRRFQSIQYRLFVLFLLSMSGIVLAVSLLFYNRTTVQFHDKVS
ELARKNVSQTAGLFELLLGSYNSLSKSISNNMDLVRLLTTDSSDLPAVNYINERTITN
ILGAIYYSREDLIGIHVITDTGKVYNYGNYMNVIDTHYEHTEWYKEIRKSAGKIAWLG
VYPHSVIDQVETRPVFAFGRQLYDLDEHKPIGIVLFETEPRSVLSALHNLRLGTNSQV
YLLGHENRIVSATSSDPPPDLRNLEQQVPEEDVIVNRSNERVVIASKLPFADWSVISV
TPSEDLNVELVQNQRYLFIVAPILIIVSALIASIVSRSISFPLKRVIREMKRVETGNF
RHTVNTKSYEEINQLATSFNHMVRRIAELIELVRISSVSEKNAELHALQTQVNPHFLY
NTLDMIYWMLDEKGQDQLGEVVLSLSHMFRYSSHWEEGADVSLREEVEQVGHYLTIIQ
ARLEGRVSVDINIEERWMDIRLPKMTLQPLIENAVKHGLEPLHADTGGKLLVRAEEYG
GVLSLHIIDNGAGMEYERWEVVQVALAEPGKQTGSGQAGGIGLQNLNLRLRHMFGEEY
GLRISSAPGAGTTATVSVPLPQKEEKHEYSDS"
misc_feature 418082..418216
/locus_tag="PPE_00380"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(418085..418090,418094..418099,418106..418111,
418115..418117,418163..418168,418172..418177,
418184..418189,418193..418198,418205..418210)
/locus_tag="PPE_00380"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 418262..418513
/locus_tag="PPE_00380"
/note="Histidine kinase; Region: His_kinase; pfam06580"
/db_xref="CDD:203479"
misc_feature 418559..418882
/locus_tag="PPE_00380"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(418565..418567,418577..418579,418586..418588,
418673..418675,418679..418681,418685..418687,
418691..418696,418772..418783,418838..418840,
418844..418846,418859..418864,418868..418870)
/locus_tag="PPE_00380"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 418577..418579
/locus_tag="PPE_00380"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(418685..418687,418691..418693,418772..418774,
418778..418780)
/locus_tag="PPE_00380"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 418908..420092
/locus_tag="PPE_00381"
/db_xref="GeneID:9773139"
CDS 418908..420092
/locus_tag="PPE_00381"
/note="COGMatches:COG4753; PfamMatches:PF00072, PF00165;
PrositeMatches:PS50110, PS00041, PS01124; go_process:
regulation of transcription, DNA-dependent (GO:0006355),
go_component: intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="chemotaxis protein CheY"
/protein_id="YP_003868775.1"
/db_xref="GI:308067170"
/db_xref="GeneID:9773139"
/translation="MNILIADDESMIRQGIRRTIGQALPTCGIHLAASTEEAAGILAE
HPVDIVLTDILMPGMDGLEFMRISKRKHPHLQWVVISAHSDFHYAQRAVKLGAKDYLL
KPIGKKKLLECIEILAAEALVASQQANEGRLLKSNMVYLREAVFQRYALGLDTGKLDI
QPFVENYPEFHLFMVRMEPDHKQTHLEHFMIENVLSELIEAGGSGFVVSLDRHSLLGI
ARLRDEAEAARLETLLESHLKRYVKVPLQISRSGVHHNFASIPEEVARLRRTPEEIAA
AAADTGECLRKGMHTVDVALQYIRAHFTEELSLEKVASIVFLNPVYFSQLFKQKTGQG
YKDYVICLRMEEAKRLLSDPHLRLADISERIGYQDMRHFTQVFRRKCGMTPTEYRHQG
VK"
misc_feature 418914..419252
/locus_tag="PPE_00381"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 418917..419252
/locus_tag="PPE_00381"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(418926..418931,419064..419066,419088..419090,
419148..419150,419205..419207,419214..419219)
/locus_tag="PPE_00381"
/note="active site"
/db_xref="CDD:29071"
misc_feature 419064..419066
/locus_tag="PPE_00381"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(419073..419078,419082..419090)
/locus_tag="PPE_00381"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 419214..419222
/locus_tag="PPE_00381"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 419730..420080
/locus_tag="PPE_00381"
/note="AraC-type DNA-binding domain-containing proteins
[Transcription]; Region: AraC; COG2207"
/db_xref="CDD:32389"
misc_feature 419802..419921
/locus_tag="PPE_00381"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature 419973..420077
/locus_tag="PPE_00381"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene complement(420165..421070)
/locus_tag="PPE_00382"
/db_xref="GeneID:9773140"
CDS complement(420165..421070)
/locus_tag="PPE_00382"
/note="COGMatches:COG0583; PfamMatches:PF00126, PF03466;
PrositeMatches:PS50931; go_process: regulation of
transcription, DNA-dependent (GO:0006355)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_003868776.1"
/db_xref="GI:308067171"
/db_xref="GeneID:9773140"
/translation="MDMKHLHYFCVIVEEGQITKAARTLNMAQPPLSQQLKNMEDELG
VKLIYREGKKWEVTEAGYTLYTRAKRLLAEMEDTCREIGEFENKVTGTLSIGTSSACM
SLITEQLSRFHQVYPEVYVKIGHGDTHHLEELLHQNKVDLALLLLPVDDKSYHTIELE
GVSFVAVLPCEWADRHPSGEITLQEAASYDLLLGRRTEGHGLYETVIRKFQEHHLIPR
VVLDCPEISTILSLVSTGMGITIIPDAGLGQEYGDRFRTLSIKEPFPFTQPAVVWRKD
RYLSNAARKFVELLQAGDTKKTAPE"
misc_feature complement(420195..421070)
/locus_tag="PPE_00382"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(420888..421064)
/locus_tag="PPE_00382"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(420201..420797)
/locus_tag="PPE_00382"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature complement(order(420366..420371,420375..420380,
420396..420413,420696..420716,420720..420722,
420732..420734,420741..420746,420750..420755))
/locus_tag="PPE_00382"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 421231..421821
/locus_tag="PPE_00383"
/db_xref="GeneID:9773141"
CDS 421231..421821
/locus_tag="PPE_00383"
/EC_number="4.1.1.-"
/note="COGMatches:COG0163; PfamMatches:PF02441"
/codon_start=1
/transl_table=11
/product="aromatic acid decarboxylase"
/protein_id="YP_003868777.1"
/db_xref="GI:308067172"
/db_xref="GeneID:9773141"
/translation="MKKIIVGISGATGSIFGIRILQQLREAGVQSHLVLSPWAIANIP
YETGYTVKEVEAMADAVYSYKDQAARISSGSFRVDGMVVAPCSMKTLASIRIGMADNL
LTRSADVMLKERKKLLLMTRETPLSSIHLENMLELSRMGVMILPPMPAFYNHPVSIEE
LVDHIVFRALDQFGIVTTAAKRWDGMKQNDSRLHQN"
misc_feature 421231..421794
/locus_tag="PPE_00383"
/note="aromatic acid decarboxylase; Validated; Region:
PRK05920"
/db_xref="CDD:180312"
misc_feature 421234..421620
/locus_tag="PPE_00383"
/note="Flavoprotein; Region: Flavoprotein; pfam02441"
/db_xref="CDD:202241"
gene 421847..423268
/locus_tag="PPE_00384"
/db_xref="GeneID:9773142"
CDS 421847..423268
/locus_tag="PPE_00384"
/note="COGMatches:COG0043; PfamMatches:PF01977"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868778.1"
/db_xref="GI:308067173"
/db_xref="GeneID:9773142"
/translation="MMAYKDFRDFLHTLEKEGQLLTISDEVKPEPDIAAANRALHNIG
DKTPALFFNNIYGYTDARIAMNVMGSWPNHALMMGMPKNTPLKEQFFEFARRYEQFPV
PVKREETAPFHEVEITEDINLFDILPLFRLNQGDGGFYLDKAILVSRDLDDPDTYGKQ
NVGLYRMQVKGKNRLGIQPVPQHDIAIHIRQAEERGENLKVAIALGCEPVITTAASTP
LLYDQSEYEMAGAIQGEPYRVVKAKDADLDLPWGAEVILEGEVLAGEREYEGPFGEFT
GHYSGGRAMPVIQINRVYHRKQPIFEHLYIGMPWTETDYMIGVNTSVPLFQQLKDAFP
NEIVAVNAMYTHGLVAIISTKTRYGGFAKAVGMRALTTPHGLGYCKLVIVVDEEVDPF
NLPQVMWALSTKLHPKHDAVIVPGLSILPLDPGSDPAGMTHKMILDATTPVAPDIRGH
YSQPLDSPLGVAEWEKKLSQMLR"
misc_feature 421865..423172
/locus_tag="PPE_00384"
/note="UbiD family decarboxylases; Region: TIGR00148"
/db_xref="CDD:129252"
gene 423310..423534
/locus_tag="PPE_00385"
/db_xref="GeneID:9773143"
CDS 423310..423534
/locus_tag="PPE_00385"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868779.1"
/db_xref="GI:308067174"
/db_xref="GeneID:9773143"
/translation="MHICPRCESNRSEVVSHSPVKGAWEVLLCPVCLFTWRTSEPDSI
TDPAKYKSAFKVNPQDIPNAAHVPPIPERI"
gene 423607..424068
/locus_tag="PPE_00386"
/db_xref="GeneID:9773144"
CDS 423607..424068
/locus_tag="PPE_00386"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868780.1"
/db_xref="GI:308067175"
/db_xref="GeneID:9773144"
/translation="MQTPRIGKELFTLLDGKALENKQHEAMMLLTVTEDQWPHIAMIS
VGEVVALDEGNLRLALWPGTTTTGNMIRTGKATLAVFTGGKAHYVRLSLEHLPALREA
KHVRERFAARVFAAREDSAQYADILTGVTVRLKEPESVIHRWKETVAELLM"
misc_feature 423670..423879
/locus_tag="PPE_00386"
/note="Pyridoxine 5'-phosphate (PNP) oxidase-like
proteins; Region: PNPOx_like; cl00381"
/db_xref="CDD:212207"
gene 424235..425395
/locus_tag="PPE_00387"
/db_xref="GeneID:9773145"
CDS 424235..425395
/locus_tag="PPE_00387"
/note="COGMatches:COG1680; PfamMatches:PF00144;
PrositeMatches:PS00013; go_process: response to antibiotic
(GO:0046677)"
/codon_start=1
/transl_table=11
/product="beta-lactamase class C and other penicillin
binding protein"
/protein_id="YP_003868781.1"
/db_xref="GI:308067176"
/db_xref="GeneID:9773145"
/translation="MSRFDKVDQLLKQFVANGPAGCGCAIAQNGEVLYEGYHGYADLE
ARKPITEDTVYRLFSMTKVVVCAAALMLYERGQFLLNEPLYEYLPEYRDSYVFKTAPN
GYTYVDKVENPILIKHIFNMSVGLPYASESSETGRAMQKVLTTLKEKQGKYDLRTEIK
ALSEVPLAFEPGTRWLYGYGHDLVAGLIEVISGKSLGQFLKDEIFDPLGMSNTGYRYR
GDIKSRMASMYQRIDTGKLEKIEGFLDEYHQPDAIYESGGAGLYSTVKEYLTFSQMLS
NGGVVDGVRLLGRKTIDLMRTNHLNTDQLLDFTNSYHTGYGYGLGVRTLIDKAAGHAN
SSIGEFGWTGAAGTWVSIDPSEQFSVVYMHQLSPSMEEYHHLRVRAAAYSCL"
misc_feature 424235..425350
/locus_tag="PPE_00387"
/note="Beta-lactamase class C and other penicillin binding
proteins [Defense mechanisms]; Region: AmpC; COG1680"
/db_xref="CDD:31866"
misc_feature 424253..425383
/locus_tag="PPE_00387"
/note="Beta-lactamase; Region: Beta-lactamase; pfam00144"
/db_xref="CDD:201034"
gene 425610..427946
/locus_tag="PPE_00388"
/db_xref="GeneID:9773146"
CDS 425610..427946
/locus_tag="PPE_00388"
/note="PfamMatches:PF02368"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868782.1"
/db_xref="GI:308067177"
/db_xref="GeneID:9773146"
/translation="MKNRWSGFLALVILISSFTSYAGFASAAEAVLSKVVLSSNEVTL
QQGDTAALTATAVFSDGTTSSVTVSTDWKSDNTAIATVYNGTVSAKAEGEATVVATYK
EKVQSVQVHVTKKVKALTSSVQSLNLRSSGTGQVDLTATYSDNTTAQVSGDATWTSDN
QKVATVVNGLVTAQGAGTANIKAVYGQQNVTIAVQVEQVKRLDASTSEVSLLLKDTEK
VKLTAMFPDGSVQDVTESAEWSSSNTAVADVLKGTITGYSTGKATITGKYGTMSATIA
VDVDQTNKLKASETNIFLRLDESKKIQVSAVYPDGTVTDITDKAAWTSSDEKIATVNK
GTIMAIGAGSATVTAKYGDKTVSIKTDVETSRYLDLSEDKLSLNAKESKKLKLTATYV
TGTEEDITSKAEWKSSNEDIAFVSAGEVTGYKTGEATITASYGGKTVTATVSVNVPGD
LSLSSKTATIDIDEDYTATLTATYADGRKEDVTQDAEWASSAEDIASVSKGTITGKSA
GKAVITATYNGKKLTINVQVGLVDRLETDSRVIALGAQETKQLKVTGVKSGGTKTDVT
KDATWTTSNVKVVEVSEGLIKANGSGKATVTASYGKQNITFTVEVDVAQKIEADAIAL
SLKSGDQKTIAIVVKSSDGKEKDVTTQAEWKTSNYKVATVKKGQVTAVSYGKANIQAK
FGGKVISVPVDVDTLKYLQTDEVALNLKAGQLAKVTATATYKDESEEDVSKPAVWSSS
RIVVATVKDGNIKAQGKGKAVITVKYAGKMVKVQVTVQ"
gene complement(428104..429003)
/gene="sdhA"
/locus_tag="PPE_00389"
/db_xref="GeneID:9773147"
CDS complement(428104..429003)
/gene="sdhA"
/locus_tag="PPE_00389"
/EC_number="4.3.1.17"
/note="TIGRFAMsMatches:TIGR00718; COGMatches:COG1760;
PfamMatches:PF03313; PrositeMatches:PS00070"
/codon_start=1
/transl_table=11
/product="L-serine dehydratase subunit alpha"
/protein_id="YP_003868783.1"
/db_xref="GI:308067178"
/db_xref="GeneID:9773147"
/translation="MRFSHLHEISALCAEESTTIGRLMIQEQVQETNTTEEEIFRQMS
DYYEVMKEAVHRGQTQDTVSRSGLTGGDGKRLAEYLRSGETCSGDASALAMAYALSVS
EVNASMGRIVATPTAGSCGVIPGVFISAQERFGWDDEHMVNGLFAAGAIGYVIANNSF
ISGAEGGCQAEIGSAIGMAAGAMVELRGGTPEQAVHAVGLALKNTLGLICDPVAGLVE
IPCIVRNGLGAVTALAAADMALAGVRSAIPSDEVIDVMLEVGSAMPSKHRETAKGGLA
QTPTGKRLTESLTRNTPTKKDKS"
misc_feature complement(428152..428997)
/gene="sdhA"
/locus_tag="PPE_00389"
/note="Serine dehydratase alpha chain; Region: SDH_alpha;
cl12120"
/db_xref="CDD:209456"
misc_feature complement(428170..428889)
/gene="sdhA"
/locus_tag="PPE_00389"
/note="L-serine deaminase [Amino acid transport and
metabolism]; Region: SdaA; COG1760"
/db_xref="CDD:31946"
gene complement(428993..429682)
/gene="sdhB"
/locus_tag="PPE_00390"
/db_xref="GeneID:9773148"
CDS complement(428993..429682)
/gene="sdhB"
/locus_tag="PPE_00390"
/EC_number="4.3.1.17"
/note="TIGRFAMsMatches:TIGR00719; COGMatches:COG1760;
PfamMatches:PF03315, PF01842; go_process: metabolism
(GO:0008152)"
/codon_start=1
/transl_table=11
/product="L-serine dehydratase subunit beta"
/protein_id="YP_003868784.1"
/db_xref="GI:308067179"
/db_xref="GeneID:9773148"
/translation="MRFKDVFSIIGPAMTGPSSSHTAGAVRLARVARHWLGTQPDRAR
MTLYGSFADTYKGHGTDLALIAGLLNYDTDDHRIPDAEQWAEQAGMAVEFAVSGLPAP
HPNTVRFELWKGEDQRTLLGSSIGGGSIHVQQLNEFRVNLTGELPTLVLLHSDKPGTL
GAITSALGAAHINIAYMHVDRKGRDGEALTAIETDSSAPAELIAELRSLPHMYEIKMI
NLKKGAESDAV"
misc_feature complement(429065..429682)
/gene="sdhB"
/locus_tag="PPE_00390"
/note="L-serine dehydratase, iron-sulfur-dependent, beta
subunit; Region: sda_beta; TIGR00719"
/db_xref="CDD:129802"
misc_feature complement(429332..429670)
/gene="sdhB"
/locus_tag="PPE_00390"
/note="Serine dehydratase beta chain; Region: SDH_beta;
pfam03315"
/db_xref="CDD:202592"
misc_feature complement(429029..429241)
/gene="sdhB"
/locus_tag="PPE_00390"
/note="ACT_3PGDH-like CD includes the C-terminal ACT
(regulatory) domain of D-3-phosphoglycerate dehydrogenase
(3PGDH); Region: ACT_3PGDH-like; cd04879"
/db_xref="CDD:153151"
misc_feature complement(order(429164..429166,429218..429220,
429224..429226))
/gene="sdhB"
/locus_tag="PPE_00390"
/note="L-serine binding site [chemical binding]; other
site"
/db_xref="CDD:153151"
gene 430225..431832
/locus_tag="PPE_00391"
/db_xref="GeneID:9773149"
CDS 430225..431832
/locus_tag="PPE_00391"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868785.1"
/db_xref="GI:308067180"
/db_xref="GeneID:9773149"
/translation="MVKGLRFTGSRLKGILHLAAIVSLLVGIFVPFGQVKAEGALTVA
EALQGQSSGGTVTVEGYIVGHATGSKTANFSSPFANDFNVLIADQANERNTSNLLDVQ
LTSAYRGQYGLSGHPELIGSKIRVTGTLGAYNNFGGVKGPSAVELVSGSEPGEPGEPG
EPGEPGNPGQPGTTLPDGKGKKVLFDNTHAQTAGAADWVIEGAFSDFANGLRNVGFTV
DQLNRPIPFTYGEQAITYDKLRQYDVFIIGEANVAFKASEQAALLQYVNNGGSIFFIS
DHYNADRNKNRWDSSEVMNGYRRGAYTNPAKGMTAEEAASPAMQGLTSSDWLATNFGV
RFRYNALGDVNATDIVAADQSFGITKGVRSIAMHAGSTLAIIDPTKAKGIAYIPSGTK
KWGNAVDQGVYNGGGRAEGAYAGISKVGQGKAAFIGDSSPVEDATPKYVREENGQSKK
TYDGFKEVDDSTFLVQTVQWLAWKQDYTKLSDVAGLTLDQPTKLLPFEEPAASTEPQA
EPWSAPAAGYKWYDPRTFKSGSYGAAS"
misc_feature <430825..431070
/locus_tag="PPE_00391"
/note="ABC-type uncharacterized transport system; Region:
ABC_transp_aux; pfam09822"
/db_xref="CDD:204320"
gene 432158..433189
/locus_tag="PPE_00392"
/db_xref="GeneID:9773150"
CDS 432158..433189
/locus_tag="PPE_00392"
/note="COGMatches:COG0444; PfamMatches:PF00005;
PrositeMatches:PS00211, PS50893; go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter ATP-binding protein"
/protein_id="YP_003868786.1"
/db_xref="GI:308067181"
/db_xref="GeneID:9773150"
/translation="MNTEPVLEIKGLSVSFRIKDQYHPAVDHLDLTVNPNEVLAVVGE
SGCGKSALALSIAQLHDMERTRVEGEVLFKGTDLNRLSSGQMNKIRGAGIGMIFQDPL
TALNPLMSIGKQIEENLDYHTSLSTKQKRERVLELLENVDIPNPVRVYEQYPHELSGG
MRQRVMIAIAIACRPSLIIADEPTTALDVTIQSQILDLLKQLQQETGSGIILITHDLG
VVAEVADRVVVMYAGEIVESADVFELFRHPQHPYTRSLLASMPGSHTKGESLHVIGGI
VPSLQDIPRNSCRFAPRIPWIQQRVHEDHPQLNEISPGHWVRCTCYQHFHFEDEAKGE
AAHGTTGVK"
misc_feature 432173..433114
/locus_tag="PPE_00392"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppD; COG0444"
/db_xref="CDD:30793"
misc_feature 432173..432874
/locus_tag="PPE_00392"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 432284..432307
/locus_tag="PPE_00392"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(432293..432298,432302..432310,432452..432454,
432698..432703,432800..432802)
/locus_tag="PPE_00392"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 432443..432454
/locus_tag="PPE_00392"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 432626..432655
/locus_tag="PPE_00392"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 432686..432703
/locus_tag="PPE_00392"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 432710..432721
/locus_tag="PPE_00392"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 432788..432808
/locus_tag="PPE_00392"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 432857..433114
/locus_tag="PPE_00392"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene 433167..434093
/locus_tag="PPE_00393"
/db_xref="GeneID:9773151"
CDS 433167..434093
/locus_tag="PPE_00393"
/note="COGMatches:COG4608; PfamMatches:PF00005;
PrositeMatches:PS00211, PS50893; go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter ATP-binding protein"
/protein_id="YP_003868787.1"
/db_xref="GI:308067182"
/db_xref="GeneID:9773151"
/translation="MALLELNDLRVHYPVRGGFLQRVVDQVKAVDGVSISIEAGQTYG
LVGESGCGKTTTGRTIIGLNKLTSGRILFKGKDLAALSRNNRHPLRRDIQMIFQDPYS
SLNPRKRVLDVIAEPLRNFERLSSEEERRKVQTLLEKVGLNADAAYKYPHEFSGGQRQ
RIGIARALTLNPKLIIADEPVSALDVSVQAQVLNFMKDVQREFNLTYLFISHDLGIIR
HMCDQIGIMYRGRLVEQGSEQDIYERPQHLYTQRLIATIPNIDPTKRLENAQKRRMLL
SSYKTELPKHLDASGKPFALKSVSPSHQVALP"
misc_feature 433173..434084
/locus_tag="PPE_00393"
/note="oligopeptide ABC transporter ATP-binding protein
OppF; Provisional; Region: PRK15079"
/db_xref="CDD:185037"
misc_feature 433173..433874
/locus_tag="PPE_00393"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature 433305..433328
/locus_tag="PPE_00393"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature order(433314..433319,433323..433331,433458..433460,
433698..433703,433800..433802)
/locus_tag="PPE_00393"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature 433449..433460
/locus_tag="PPE_00393"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature 433626..433655
/locus_tag="PPE_00393"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature 433686..433703
/locus_tag="PPE_00393"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature 433710..433721
/locus_tag="PPE_00393"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature 433788..433808
/locus_tag="PPE_00393"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature 433863..>433970
/locus_tag="PPE_00393"
/note="Oligopeptide/dipeptide transporter, C-terminal
region; Region: oligo_HPY; cl07097"
/db_xref="CDD:212282"
gene 434107..435075
/locus_tag="PPE_00394"
/db_xref="GeneID:9773152"
CDS 434107..435075
/locus_tag="PPE_00394"
/note="COGMatches:COG0601; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_003868788.1"
/db_xref="GI:308067183"
/db_xref="GeneID:9773152"
/translation="MWKFTLRRLLVMIPQLFALSVLIFFLAKAMPGDALTGLITSTPN
LNPAALEEQRQRLGLNDPVWVQYGNWLVQLAHGDLGKSYVHKISVTDLIGSRLGNTFF
LGVVILVLTYLIAIPLGVLSGRYQHSLLDKTVVGYTYFSFATPLFILALLLLYVFGFR
LGWFPTSGSVDVGVEPGTWPYYVNKSYHLILPAVTGALLSTTATIQYLRNEVIDTRLK
DFVKTARSKGVPEGKIYSRHIFKNSLLPIAAFLGYDLTGVIAGNIFLESIFGFPGLGQ
LFLQSITQRDFSVVNALVMISGFLALLGTLLSDVILSKVDPRIRIE"
misc_feature 434107..435072
/locus_tag="PPE_00394"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature 434395..435018
/locus_tag="PPE_00394"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(434443..434448,434455..434460,434473..434475,
434506..434517,434521..434550,434557..434562,
434566..434568,434701..434706,434710..434712,
434716..434718,434725..434730,434734..434736,
434746..434751,434758..434760,434809..434811,
434851..434856,434863..434865,434884..434895,
434902..434907,434938..434943,434971..434976,
434983..434988,434992..434997,435004..435009,
435016..435018)
/locus_tag="PPE_00394"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(434524..434568,434884..434901)
/locus_tag="PPE_00394"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(434566..434568,434686..434688,434902..434904,
434932..434934,434941..434943,434971..434973)
/locus_tag="PPE_00394"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(434761..434799,434815..434820,434830..434832)
/locus_tag="PPE_00394"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 435104..436012
/locus_tag="PPE_00395"
/db_xref="GeneID:9773153"
CDS 435104..436012
/locus_tag="PPE_00395"
/note="COGMatches:COG1173; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="peptide ABC transporter permease"
/protein_id="YP_003868789.1"
/db_xref="GI:308067184"
/db_xref="GeneID:9773153"
/translation="MVSIQVEEVFTPEIIRKSPSSWSVLRRELVRDKMSLVSIGFVIL
FLIFIYASVLFVNQDVVTTVDLGAIREAPGSVHWLGTDRAGRDIFGQLVIGARNSFTI
GFTITLLSAAIGLTLGLLAGFYGGLVDNIIMRIIDFILVLPFLMLVIVFVSIVPKSGI
GSFIFIMTAFLWIGKARLIRAKVLSERELDYVQASKTLGTPNWKIIWFGVLPNLSSVV
IVNLTLSLAGNIGIETGLSYLGFGLPESTPSLGTLVSYANDPDVLQNSWWMWLPASLL
ILVLMLAINFIGQALKRATDARQRLG"
misc_feature 435143..436003
/locus_tag="PPE_00395"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:31366"
misc_feature 435470..435946
/locus_tag="PPE_00395"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(435497..435508,435512..435541,435548..435553,
435557..435559,435611..435616,435620..435622,
435626..435628,435635..435640,435644..435646,
435656..435661,435668..435670,435719..435721,
435761..435766,435773..435775,435794..435805,
435812..435817,435857..435862,435902..435907,
435914..435919,435923..435928,435935..435940)
/locus_tag="PPE_00395"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(435515..435559,435794..435811)
/locus_tag="PPE_00395"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(435557..435559,435596..435598,435812..435814,
435851..435853,435860..435862,435902..435904)
/locus_tag="PPE_00395"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(435671..435709,435725..435730,435740..435742)
/locus_tag="PPE_00395"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 436055..437875
/locus_tag="PPE_00396"
/db_xref="GeneID:9773154"
CDS 436055..437875
/locus_tag="PPE_00396"
/note="COGMatches:COG0747; PfamMatches:PF00496;
PrositeMatches:PS00013; go_process: transport
(GO:0006810)"
/codon_start=1
/transl_table=11
/product="oligopeptide-binding protein oppA"
/protein_id="YP_003868790.1"
/db_xref="GI:308067185"
/db_xref="GeneID:9773154"
/translation="MVKHWKKGVLPVLSAILVLSLAACSGSPSASNGGKSSDGTGGSG
SDSKQVNTTALAKAIKNDKAPIKGGIINYALVSDTPFEGILNPVFYDGNPDFEVFQFF
YPSMFSIDSNLNIDNKGAATISFSPDNKAVTVKIDPKLNWTDGNPVTAEDYAFSYEVI
GHKDYEGPRYDSFMTNIVGMEDYHAGKAKTISGIKVLNEKEVTIRFKEPNPSVKSGLW
STPLEKKVFQNIPVKDMAGSDPVRKNPIGYGPFKIKSMVTGESVEFVKNEDYFHGEPK
LDGLHLKVVNQNVITEALKSGEVDWASYPTTRYNEASNPKNVQFLGQEELSYSYVGFK
MGKFDQAKSLNIMDPNAKLANKSLRQALGYALNNEQVGKQLYHGLRIPATSLIPPAFK
GYHDINAKGITYDPDKAKKLLDEAGYVDTNGDGYRENPKGKELVLHYAAMSGDATAES
LAKFYLQNWKDVGLHVELVDGRLLEFNSFYDRVQKDDPGIDIFGGAWSTGTDVDPSGL
YGRGASFNYSRFTSEENDKLLREGVSVKAFDDNYRKDIYNQWQAYMSEEAPIVPTLFR
YSLEAVNNRVANYDITRGKEYDADAFANITLTAEKAEVAQ"
misc_feature 436256..437791
/locus_tag="PPE_00396"
/note="The substrate binding component of an ABC-type
lactococcal OppA-like transport system contains; Region:
PBP2_Lactococcal_OppA_like; cd08510"
/db_xref="CDD:173875"
misc_feature 436430..437581
/locus_tag="PPE_00396"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
misc_feature order(436700..436702,437378..437380,437480..437482,
437489..437494,437540..437545,437573..437578,
437597..437599,437603..437605)
/locus_tag="PPE_00396"
/note="peptide binding site [polypeptide binding]; other
site"
/db_xref="CDD:173875"
gene 438124..438879
/locus_tag="PPE_00397"
/db_xref="GeneID:9773155"
CDS 438124..438879
/locus_tag="PPE_00397"
/note="COGMatches:COG0583; PfamMatches:PF03466"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_003868791.1"
/db_xref="GI:308067186"
/db_xref="GeneID:9773155"
/translation="MTLFDRAGKKIKMTDAGKLLLQHSAHALKDLQQAKASIEELRTE
QRGSLRIGIALPELEEPLQEMFIHFHQSFPKVSLHIHPSFDVTEQLLDNRVDVGITLH
SGTDERLVQLPLRTENYCLVVPVEHVFSNRFSITLDELRHVPWAMQPECHPGRKLIEK
CFRDRGYPFATVLETNSIPSILRWVQEGLAVTLQTESLAAELDRSQFCTVPILCGVLQ
GQLELIYQSGRYQGEALKRLIEKIQAVLTVRSN"
misc_feature 438124..438873
/locus_tag="PPE_00397"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 438265..438843
/locus_tag="PPE_00397"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature order(438289..438294,438319..438324,438331..438333,
438343..438345,438349..438366,438637..438654,
438670..438675,438679..438684)
/locus_tag="PPE_00397"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene complement(438907..439557)
/locus_tag="PPE_00398"
/db_xref="GeneID:9773156"
CDS complement(438907..439557)
/locus_tag="PPE_00398"
/note="COGMatches:COG0765; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter permease"
/protein_id="YP_003868792.1"
/db_xref="GI:308067187"
/db_xref="GeneID:9773156"
/translation="MDFGGLFVWPNVRFILEGFLLTLEVAIYSIVFSFALGILFGILR
YTRLPVISQVAAFIIDLIRNLPLLLIIFFIGMVLPSIGISISIKWAAITGLSIFEGAM
IAEIVRSGLNSVHKGQVEAARSSGLSYSQTLWHIILPQALRRMVPPIVSQFISLFKDT
SLAVIISLPELTHNIQIVGGQNQSFVIPALLFAAFLYFAVNYSMSLIARRLEVRTH"
misc_feature complement(439048..439503)
/locus_tag="PPE_00398"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(439063..439068,439075..439086,
439105..439107,439114..439119,439159..439161,
439210..439212,439219..439224,439234..439236,
439240..439245,439252..439254,439258..439260,
439264..439269,439333..439335,439339..439344,
439351..439380,439384..439395,439423..439425,
439438..439443,439450..439455))
/locus_tag="PPE_00398"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(439069..439086,439333..439377))
/locus_tag="PPE_00398"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(439066..439068,439282..439284,
439333..439335))
/locus_tag="PPE_00398"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(439138..439140,439150..439155,
439171..439209))
/locus_tag="PPE_00398"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(439572..440231)
/locus_tag="PPE_00399"
/db_xref="GeneID:9773157"
CDS complement(439572..440231)
/locus_tag="PPE_00399"
/note="COGMatches:COG0765; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="amino acid ABC transporter permease"
/protein_id="YP_003868793.1"
/db_xref="GI:308067188"
/db_xref="GeneID:9773157"
/translation="MLTFDINVLFDHSDRFREGLLHTVQASVIALIGSFILGAIIAIL
RIAPFKWLNWIGTVYVEVIRNIPLLIVVLFFYLGLPTLGIPLDGFVSGTLGLTVYTAS
FIAEAIRAGIQAVPKGQFEAARSSGLSYNQTMINIILPQAIKVVLPAIGNQFINLVKN
SSVLAIVAGLDLMYYSDLINSDTFLPITVYAITALLYLILTVPLSFLVLYMERRLSKT
S"
misc_feature complement(439581..440207)
/locus_tag="PPE_00399"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature complement(439626..440174)
/locus_tag="PPE_00399"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(439626..439631,439638..439643,
439647..439652,439659..439664,439692..439697,
439734..439739,439746..439757,439776..439778,
439785..439790,439830..439832,439881..439883,
439890..439895,439905..439907,439911..439916,
439923..439925,439929..439931,439935..439940,
440004..440006,440010..440015,440022..440051,
440055..440066,440094..440096,440109..440114,
440121..440126))
/locus_tag="PPE_00399"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(439740..439757,440004..440048))
/locus_tag="PPE_00399"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(439662..439664,439692..439694,
439701..439703,439737..439739,439944..439946,
440004..440006))
/locus_tag="PPE_00399"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(439809..439811,439821..439826,
439842..439880))
/locus_tag="PPE_00399"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(440303..441133)
/locus_tag="PPE_00400"
/db_xref="GeneID:9773158"
CDS complement(440303..441133)
/locus_tag="PPE_00400"
/note="COGMatches:COG0834; PfamMatches:PF00497;
PrositeMatches:PS00013, PS01039; go_component: periplasmic
space (sensu Gram-negative Bacteria) (GO:0030288)"
/codon_start=1
/transl_table=11
/product="glutamine-binding protein"
/protein_id="YP_003868794.1"
/db_xref="GI:308067189"
/db_xref="GeneID:9773158"
/translation="MRKRFQWSTLVLVALSCLLVLAGCGGKEGAATSGNEPAAAKGLE
AIKQRGKLVVGVKYDTKLFGLKDPASGKVEGFDIDIAKAVAKHIFGDETKLELKEVTS
KTRITLLQNGDIDAIIATMTISDERKKQVDFSDVYFNAGQSLLVKKGSPITGLESLTA
NTKVLAVKGSTSAKNIREKAPEATILEFENYQDAFNALKAGKGEALTTDNSILLGMQK
QDPNYILVGGNFTEEPYGIAVKKGQPELLQAINDTLKELKSNGEYDKLHEQWLGVKPE
"
misc_feature complement(440315..440980)
/locus_tag="PPE_00400"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature complement(440321..440980)
/locus_tag="PPE_00400"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature complement(order(440507..440509,440621..440623,
440753..440755,440828..440830,440954..440956))
/locus_tag="PPE_00400"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature complement(order(440528..440530,440546..440548,
440558..440560))
/locus_tag="PPE_00400"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature complement(order(440426..440431,440432..440437))
/locus_tag="PPE_00400"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene complement(441176..441934)
/locus_tag="PPE_00401"
/db_xref="GeneID:9773159"
CDS complement(441176..441934)
/locus_tag="PPE_00401"
/EC_number="3.6.3.21"
/note="COGMatches:COG1126; PfamMatches:PF00005;
PrositeMatches:PS00211, PS50893; go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="glutamine ABC transporter ATP-binding protein"
/protein_id="YP_003868795.1"
/db_xref="GI:308067190"
/db_xref="GeneID:9773159"
/translation="MYSSLKGVSSLIQFRNVNKHYGHFHVLKDINLQINEGEVVVIIG
PSGSGKSTLLRCINRLETISDGELIVNEIPVHDKKIDINAFRRNIGMVFQHFNLYPHK
KVIENIVLAPMKVLGISKEEATQTAITYLKRVGIEEKAQSYPAQLSGGQQQRVAIARG
LAMNPKIMLFDEPTSALDPETIGEVLDVMRSLAHQGITMVIVTHEMGFAREVADRVIF
MDKGQILEDSQPAEFFQNPGEERARLFLSRLIHH"
misc_feature complement(441188..441907)
/locus_tag="PPE_00401"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:31323"
misc_feature complement(441263..441901)
/locus_tag="PPE_00401"
/note="HisP and GlnQ are the ATP-binding components of the
bacterial periplasmic histidine and glutamine permeases,
repectively. Histidine permease is a multisubunit complex
containing the HisQ and HisM integral membrane subunits
and two copies of HisP. HisP...; Region:
ABC_HisP_GlnQ_permeases; cd03262"
/db_xref="CDD:73021"
misc_feature complement(441782..441805)
/locus_tag="PPE_00401"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73021"
misc_feature complement(order(441323..441325,441419..441424,
441653..441655,441779..441787,441791..441796))
/locus_tag="PPE_00401"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73021"
misc_feature complement(441653..441664)
/locus_tag="PPE_00401"
/note="Q-loop/lid; other site"
/db_xref="CDD:73021"
misc_feature complement(441467..441496)
/locus_tag="PPE_00401"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73021"
misc_feature complement(441419..441436)
/locus_tag="PPE_00401"
/note="Walker B; other site"
/db_xref="CDD:73021"
misc_feature complement(441401..441412)
/locus_tag="PPE_00401"
/note="D-loop; other site"
/db_xref="CDD:73021"
misc_feature complement(441317..441337)
/locus_tag="PPE_00401"
/note="H-loop/switch region; other site"
/db_xref="CDD:73021"
gene 442241..442708
/locus_tag="PPE_00402"
/db_xref="GeneID:9773160"
CDS 442241..442708
/locus_tag="PPE_00402"
/note="COGMatches:COG3542; PfamMatches:PF06172"
/codon_start=1
/transl_table=11
/product="cupin"
/protein_id="YP_003868796.1"
/db_xref="GI:308067191"
/db_xref="GeneID:9773160"
/translation="MTKAISPLVTALGMEPHPEGGWYKEMWKAHFQIPKPVLPDVYSG
PRFAASSTYFLLHPGEFSEWHVVHSDELWLYHSGSPVELKLGGSGEEPGEETVIIVGA
DVEAGQHPQALVPGAVWQTARPLGDEPVLVTCVVAPGFHFDDFKLIAKNPTES"
misc_feature 442262..442681
/locus_tag="PPE_00402"
/note="Cupin superfamily (DUF985); Region: Cupin_5;
cl01418"
/db_xref="CDD:207407"
gene complement(442799..443335)
/locus_tag="PPE_00403"
/db_xref="GeneID:9773161"
CDS complement(442799..443335)
/locus_tag="PPE_00403"
/note="COGMatches:COG3764; PfamMatches:PF04203;
go_process: biosynthesis (GO:0009058)"
/codon_start=1
/transl_table=11
/product="sortase"
/protein_id="YP_003868797.1"
/db_xref="GI:308067192"
/db_xref="GeneID:9773161"
/translation="MEKATRYGPPSLTDSYARLSTRLTEVPVSEARQNTFPSPAPMVS
ANEQTPIATIRISRIALKLPVLEGATRINMRHAAVHMPETGTLGQAGNAATAAHRART
SGRLFNRLNELKIGDKIVVNARGNQYVYSVYSLKVVDPTDVSVLKSFRKQKLLTLITC
DPLVTPTHRLIVQAKLST"
misc_feature complement(442808..443185)
/locus_tag="PPE_00403"
/note="Sortases are cysteine transpeptidases, found in
gram-positive bacteria, that anchor surface proteins to
peptidoglycans of the bacterial cell wall envelope. They
do so by catalyzing a transpeptidation reaction in which
the surface protein substrate is...; Region: Sortase;
cl09098"
/db_xref="CDD:212290"
misc_feature complement(order(442829..442831,442838..442840,
442856..442861,443042..443044,443048..443050,
443054..443056,443090..443092,443126..443128))
/locus_tag="PPE_00403"
/note="active site"
/db_xref="CDD:99708"
misc_feature complement(order(442829..442831,442856..442858,
443042..443044))
/locus_tag="PPE_00403"
/note="catalytic site [active]"
/db_xref="CDD:99708"
gene complement(443475..444194)
/locus_tag="PPE_00404"
/db_xref="GeneID:9773162"
CDS complement(443475..444194)
/locus_tag="PPE_00404"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868798.1"
/db_xref="GI:308067193"
/db_xref="GeneID:9773162"
/translation="MPYCSLSKAFSAQRWLPPSEQNGNELRIQFKNKIQTPYWITFQT
SLEGELIEKEIHNQALLLDGQKTVSEWAAQVSVPHGGEYVSKVGTQNGNTTKGTELIR
NQDYKLYIKTDAQGQQTFELTFAKDISTAVILEYQSFIHAEDKAKVSNKVAFEGDRLT
TELRETSQEIIVRTSSDSGSGGGVTESLELTKVDQDMPDKVLPGAQFALYDKGQKRAP
LIQILHPRPEAQVKNMTKIQK"
misc_feature complement(<443544..>443924)
/locus_tag="PPE_00404"
/note="Predicted outer membrane protein [Cell envelope
biogenesis, outer membrane]; Region: COG4932"
/db_xref="CDD:34540"
gene complement(444546..445427)
/locus_tag="PPE_00405"
/db_xref="GeneID:9773163"
CDS complement(444546..445427)
/locus_tag="PPE_00405"
/note="COGMatches:COG2207; PfamMatches:PF02311, PF00165;
PrositeMatches:PS00041, PS01124; go_process: regulation of
transcription, DNA-dependent (GO:0006355), go_component:
intracellular (GO:0005622)"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_003868799.1"
/db_xref="GI:308067194"
/db_xref="GeneID:9773163"
/translation="MTTDQKNNVGLWNGDPVVIVRTPSAFAKQSLLYIQELGYFQQTS
AFTMERKELASFLLVFTLSGKGELLYRDKKYILKPQDLFFINCEEYVQYSTSGHESWE
YISLYLYGNLIENFYEQFAKHNKPVISMHNPYIILDKLHALICGQSDRSLSAELLTSR
LIGEILTCILQHPYDHTHVNAETLSEVRRVQQYLDQSYCERITLDSLAEMFELNKFNL
AKNFKKQIGFSPIDYLINVRITAAQSWLKTSDMSIVDIARYVGIPNTSHFINLFKEHV
GETPHSFRKKWGNRSKL"
misc_feature complement(444942..445322)
/locus_tag="PPE_00405"
/note="Cupin domain; Region: Cupin_2; cl09118"
/db_xref="CDD:212615"
misc_feature complement(444576..444827)
/locus_tag="PPE_00405"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(444573..444686)
/locus_tag="PPE_00405"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 446020..447276
/locus_tag="PPE_00406"
/db_xref="GeneID:9773164"
CDS 446020..447276
/locus_tag="PPE_00406"
/note="COGMatches:COG2733; PfamMatches:PF04286"
/codon_start=1
/transl_table=11
/product="membrane protein"
/protein_id="YP_003868800.1"
/db_xref="GI:308067195"
/db_xref="GeneID:9773164"
/translation="MGKPKNTKTAAAWSLVILGAGFAATLPFQQYGWARLLAGAFEAG
LVGGLADWFAVTALFRHPLGIPIPHTALLPKNRGKLTNALVSTVENNLLNKDSIASKI
ADIRLAVLVLGGVEKGMRTPEAAASIDVLAKRLVQSLPLAELAPVIVAELKRQVTDFD
AGPLLEALARQTSEKGYDRRALDYTLEQAESWLLRPETGYTLGTLGMQAVSGLQVSGL
MQFALNAFLGYLNEERMGEMIRHFLLDQVAELQREEHPRRQAVLDGLRTQVTRLATKD
TVQEGLNGWKDSLVEAWEGDASVLGKMEELRVRLLDYMEDGSYVQTYILPLLDRMLTD
LRGNTELLDKINVRIVEGITGLVEANHSRIGNLVRENVDKMDNKSLIALMEDKLGQDL
QWIRINGAVTGFLIGIVLTGIRMLIQ"
misc_feature 446140..447270
/locus_tag="PPE_00406"
/note="Protein of unknown function (DUF445); Region:
DUF445; pfam04286"
/db_xref="CDD:202959"
gene 447310..447690
/locus_tag="PPE_00407"
/db_xref="GeneID:9773165"
CDS 447310..447690
/locus_tag="PPE_00407"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868801.1"
/db_xref="GI:308067196"
/db_xref="GeneID:9773165"
/translation="MRLWHEHLINKLPRPQLLGQHRECCALRGNGWGKPHATVNYVFD
YHPMLLVRYHRLIMDEMKSRGYNVDPLWEQPLYRGKQCEPWEAELGEELAGAGAYVEH
DDEYMKECLDNLASKGILIEIEVT"
misc_feature 447310..447672
/locus_tag="PPE_00407"
/note="Pyrimidine dimer DNA glycosylase; Region:
Pyr_excise; cl12126"
/db_xref="CDD:209460"
gene complement(447795..448469)
/locus_tag="PPE_00408"
/db_xref="GeneID:9773166"
CDS complement(447795..448469)
/locus_tag="PPE_00408"
/EC_number="1.-.-.-"
/note="COGMatches:COG0778; PfamMatches:PF00881;
go_process: electron transport (GO:0006118)"
/codon_start=1
/transl_table=11
/product="NAD(P)H nitroreductase yfkO"
/protein_id="YP_003868802.1"
/db_xref="GI:308067197"
/db_xref="GeneID:9773166"
/translation="MSNTSAKKQEILDAFLFRHATKEFDPNRIIPEEDFQFILETGRL
SPSSVGFEPWQLVVVQNQALREKLAAVSSGGQKQIPAASHVVLILARKDVRYDSPYVE
YMYKEVKGMSEEDFASLPGRYKIFQGESQRLLENERTLFDWASKQTYIALGNMMTAAA
QIGIDSCPIEGFNYDQVHAILEEEGLLENGLLDISVIAAFGYRAHEPKREKSRQPLEK
VTRWIL"
misc_feature complement(447813..448442)
/locus_tag="PPE_00408"
/note="NAD(P)H:FMN oxidoreductase family. This domain
catalyzes the reduction of flavin, nitrocompound, quinones
and azo compounds using NADH or NADPH as an electron
donor. The enzyme is a homodimer, and each monomer binds a
FMN as co-factor. This family...; Region:
NfsB_like_nitroreductase; cd02149"
/db_xref="CDD:73307"
misc_feature complement(order(447813..447818,447822..447836,
447840..447842,447960..447962,447984..447986,
447999..448001,448008..448013,448020..448025,
448029..448034,448041..448046,448290..448307,
448314..448316,448320..448322,448326..448328,
448335..448343,448353..448355,448434..448439))
/locus_tag="PPE_00408"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73307"
misc_feature complement(order(447831..447833,447837..447839,
447957..447962,447966..447968,448236..448238,
448404..448406,448410..448418))
/locus_tag="PPE_00408"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73307"
gene 448659..449042
/locus_tag="PPE_00409"
/db_xref="GeneID:9773167"
CDS 448659..449042
/locus_tag="PPE_00409"
/note="COGMatches:COG1733; PfamMatches:PF01638"
/codon_start=1
/transl_table=11
/product="transcriptional regulator ykvN"
/protein_id="YP_003868803.1"
/db_xref="GI:308067198"
/db_xref="GeneID:9773167"
/translation="MAQEMEHAVSVNFGCPVAKTVGVIGGKWKGVILYHLTTGSRRYN
EIRRTLPNITQRMLTLQLRELERDGIVHREIYNENPPPVEYSLTPLGDTLRPLLDFMR
DWGIFYGEQGCEPVTTTSKSGKHFC"
misc_feature 448755..448991
/locus_tag="PPE_00409"
/note="HxlR-like helix-turn-helix; Region: HxlR;
pfam01638"
/db_xref="CDD:201897"
gene complement(449141..450388)
/locus_tag="PPE_00410"
/db_xref="GeneID:9773168"
CDS complement(449141..450388)
/locus_tag="PPE_00410"
/note="COGMatches:COG3858; PfamMatches:PF07833"
/codon_start=1
/transl_table=11
/product="glycosyl hydrolase"
/protein_id="YP_003868804.1"
/db_xref="GI:308067199"
/db_xref="GeneID:9773168"
/translation="MKIVNKALLSSAIFLSTAAGFYSPLAQAETGKISIMLDGYPLPF
PVQPAMMNGTTMVPFRAISEALGITVKWDQASQSITATKAQGSATKQVVLKMGSRNAT
VDGQTVQLTAAPQTVHGSTMIPLGFFGQQFGATVNWNQGTRTVSITSPREAMYTVGFY
ALSSFDQKSKIPDFNAVAFGWSRIDTNGQFTTNGKEYKWPQAAGTVTPESIVQEADSQ
GTSPYLMVYSGDGNHELTKVLENAQLQEQTISQIVSTATHKQFKGITLDLEGLGWSGD
KAKARSDYNAFIQKLSAKVHQAGLKLTVVLHPLNSSYSGYDYKTLGNLADDLIIMAYD
YGQKSTPEPLEKVDEAIQLALKETSRDKLILGISMGSEKDSTVNAKIGLAKRYDLKGI
AIWRLGIIGETAWAQMNEAIEFK"
misc_feature complement(449948..450235)
/locus_tag="PPE_00410"
/note="Copper amine oxidase N-terminal domain; Region:
Cu_amine_oxidN1; pfam07833"
/db_xref="CDD:203776"
misc_feature complement(<449285..449932)
/locus_tag="PPE_00410"
/note="The GH18 (glycosyl hydrolase, family 18) type II
chitinases hydrolyze chitin, an abundant polymer of
beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a
major component of the cell wall of fungi and the
exoskeleton of arthropods. Chitinases have...; Region:
GH18_chitinase-like; cl10447"
/db_xref="CDD:209141"
misc_feature complement(order(449387..449392,449582..449584,
449588..449590,449594..449596,449846..449848,
449918..449920))
/locus_tag="PPE_00410"
/note="active site"
/db_xref="CDD:119349"
misc_feature complement(449195..>449263)
/locus_tag="PPE_00410"
/note="The GH18 (glycosyl hydrolase, family 18) type II
chitinases hydrolyze chitin, an abundant polymer of
beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a
major component of the cell wall of fungi and the
exoskeleton of arthropods. Chitinases have...; Region:
GH18_chitinase-like; cl10447"
/db_xref="CDD:209141"
gene complement(450626..451381)
/locus_tag="PPE_00411"
/db_xref="GeneID:9773169"
CDS complement(450626..451381)
/locus_tag="PPE_00411"
/note="PfamMatches:PF07987"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868805.1"
/db_xref="GI:308067200"
/db_xref="GeneID:9773169"
/translation="MNMNTTIQTEKSRFSRFATSVGLIAAGALLFAGMASAHVTVKPS
VSQPNAWETYTLKVPVEKNIPTTKVALKIPKEVVFKQYEPVPDWKVATEKDSSGKVTT
VTWTTEKDGIQAGQYQRFSFVAQNADQNTAAAWDAFQYYSDGSIVEWTGDEGSNNPHS
ITEITADATSATPAPSADNGHDSAGTAAGHASTNTTKDSSSTAPASNNAVEAAPAASV
PASSAAQTTALVLSIIAVVLGATAVGIALKRRK"
misc_feature complement(450890..451270)
/locus_tag="PPE_00411"
/note="Reeler-like domain of YcnI and similar proteins;
Region: YcnI_like; cd08545"
/db_xref="CDD:176097"
gene complement(451407..453125)
/locus_tag="PPE_00412"
/db_xref="GeneID:9773170"
CDS complement(451407..453125)
/locus_tag="PPE_00412"
/note="COGMatches:COG2372; PfamMatches:PF04234, PF05425;
go_component: periplasmic space (GO:0042597),
go_component: inner membrane (GO:0019866)"
/codon_start=1
/transl_table=11
/product="Cu resistance protein CopC-like protein"
/protein_id="YP_003868806.1"
/db_xref="GI:308067201"
/db_xref="GeneID:9773170"
/translation="MLYLSRPARVACLLLLCLPLLILFPHSSWAHAFVIESSPTENQV
LDKSPSQVTITFNEDLQSAFMSIKVTDETGKRVDTGKAQLDPNHKATMEIQLIPGMKN
GIYSVNWRALSADGHPVNGVIPFQVGSSSNAHTHQATAPEGSGTSRIDLIAVRWFLYI
GLSLLFGAICFRLFILPSISQDKNRSEQHKQNQRPFETLSRWTKLLWSGYGITSAAIL
ISLPLQASWDAGVSIREGFSLPILGEALQFTGAGQIWFIQMILVLLLSVTLIYALDHS
ISDRQRRLWGYSSALLTLCLMLSKAFVGHPAAATHPAPAIAADFVHLAAAAFWIGSLA
VMVVCLPVAGAELPVSERATLRQAALRRFAGWGIAMVAALLATGIYGAVLYIPAPSML
LNTSYGLVLLGKAALLLVMLAFAASQFRSARQAAPSKQAARGLRAEVSVGLLVMLLTA
VLTHLSPGQAPAVPFEETRTTGGYNVTLAINPNAVGSNEFKVYVQDSKGAAISGIQQV
TLTLTPADPDQDQQEFVLPVKQQQPFRSQELMTSEGTWTVKVHALTASLDAVDTEFTL
HVGGKK"
misc_feature complement(452742..453035)
/locus_tag="PPE_00412"
/note="CopC domain; Region: CopC; pfam04234"
/db_xref="CDD:202938"
misc_feature complement(451755..452672)
/locus_tag="PPE_00412"
/note="Putative copper export protein [Inorganic ion
transport and metabolism]; Region: PcoD; COG1276"
/db_xref="CDD:31467"
gene complement(453380..455230)
/locus_tag="PPE_00413"
/db_xref="GeneID:9773171"
CDS complement(453380..455230)
/locus_tag="PPE_00413"
/note="COGMatches:COG2206; PfamMatches:PF00990, PF01966;
PrositeMatches:PS50887; go_fucntion: molecular function
unknown (GO:0005554)"
/codon_start=1
/transl_table=11
/product="HD-GYP domain-containing protein"
/protein_id="YP_003868807.1"
/db_xref="GI:308067202"
/db_xref="GeneID:9773171"
/translation="MMSIIKKLQERVTATGIYVFSICMAGVIVLLYTNQWSFLHYTTT
EWVTIYSLLGAVLILEHFTFQLPPASNKQSMDSSVYLACIFVHGTEIAILILLLNVII
AMFRHTELSWWKHTANFSSYALSIFLSSTVFELSGGTQGALNQDHFVSYLLALICYFA
VNTITLGIYFYIAYKGSFNELKQAFLAESLLVYLCTLILSLVLTTLIYNNGILGLLLF
LGLSMLLSHAFKQMFTLYREIEEKANMDRRTGLYNHSYFENTLEAELNISRSENTPLS
LALIDIDDFKKYNDHFGHLKGDQLLGFLGEFLKKETSGTHITVSRYGGEEFTLLMPGH
TAEQAYETVNAIRKRLNDSRYEGVEIFPHGCLSFSAGIAQSRIDIYDKSQLVDLADKA
LYYAKKQGKNIVHTHGSLNEVEREVDLGQDIRDLEQQLNLFLYKDINTFKHSKRVFRY
AADMSDVLQLGPEDKRRFILGALIHDIGKLEIPWNILNKKEKLSGEEWQMVQAHVMWG
KRIVEANERFIDLVPFVELHHERYDGGGYPFGFKGEQIPRLCRMLTIIDSFDAMTTER
PYQPTKTFEEAIEELRACSGSQFDPKLTAIFIHYIQHKQSAFTDLMETGL"
misc_feature complement(454016..454486)
/locus_tag="PPE_00413"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(454256..454258,454388..454390))
/locus_tag="PPE_00413"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(454253..454264,454268..454270,
454337..454339,454349..454351,454361..454366,
454373..454375))
/locus_tag="PPE_00413"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(454196..454198,454283..454285))
/locus_tag="PPE_00413"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature complement(453386..454237)
/locus_tag="PPE_00413"
/note="c-di-GMP phosphodiesterase class II (HD-GYP domain)
[Signal transduction mechanisms]; Region: COG2206"
/db_xref="CDD:32388"
misc_feature complement(453488..453916)
/locus_tag="PPE_00413"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature complement(order(453560..453562,453803..453808,
453902..453904))
/locus_tag="PPE_00413"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature complement(453803..453805)
/locus_tag="PPE_00413"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene complement(455513..456106)
/locus_tag="PPE_00414"
/db_xref="GeneID:9773172"
CDS complement(455513..456106)
/locus_tag="PPE_00414"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868808.1"
/db_xref="GI:308067203"
/db_xref="GeneID:9773172"
/translation="MVYDGVLLGLIVGLFRGGWRQGLIRFSQIRLIAGWMFPVLLLVQ
FIIFYAQEKWAWLAAINGYLFMGVYVVGLIFLWLNRHHKGFKLIIMGVLMNFIVMAVN
GGRMPVSLSASEVLGPYYTDMLKSGSVISKHYMMDASTRLSLLGDIIPLSKPYPRTQV
ISIGDVVMNFGMFLFIQNIMVMKRTKNKQQETNPRHA"
gene 456296..457537
/locus_tag="PPE_00415"
/db_xref="GeneID:9773173"
CDS 456296..457537
/locus_tag="PPE_00415"
/note="COGMatches:COG0477; PfamMatches:PF07690;
PrositeMatches:PS50850"
/codon_start=1
/transl_table=11
/product="Permease of the major facilitator superfamily"
/protein_id="YP_003868809.1"
/db_xref="GI:308067204"
/db_xref="GeneID:9773173"
/translation="MIIIMNRLSNTVMVAADMTKSRILWIAFVLGALSAFGPLSIDMY
LPSLPTLADNLHTTTSLAQLSLTACLLGLAVGQIVAGPLSDVRGRRGPLVISLILYAA
ASLLCVFAPNIGMLIALRFIQGLTGSAGIVISRAVARDLYSGKELTRFFSLLMLVNGV
APIAAPVLGGVILNFVSWRGVFMVLCVVGVAMLIAVVLGLPETLPTNRRSSGGLKQTL
GTLGHLFADRRFMGYALSQALITGAMFAYIAGSPFVLQDIFGVSPQTYSIIFAVNGLG
IVLFSQLTGRLVGRFSERQLLLSGLVIAAVAGISLLTVAFTGGQLFAVLVPLFFVVSC
VGIVSTTTTSLAMQSQQRSAGSASAMLGLLPLLLGSIASPLVGLGSGTTPVPMAVVIA
IAEVGALLSFAVLAKEARSKV"
misc_feature 456407..457528
/locus_tag="PPE_00415"
/note="bicyclomycin/multidrug efflux system; Provisional;
Region: PRK11102"
/db_xref="CDD:182964"
misc_feature 456518..>457246
/locus_tag="PPE_00415"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(456524..456529,456533..456538,456674..456679,
456686..456691,456698..456703,456710..456712,
456746..456751,456758..456763,456779..456781,
457016..457018,457025..457030,457037..457042,
457049..457051,457091..457093,457103..457105,
457115..457117,457124..457126,457136..457138)
/locus_tag="PPE_00415"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 457654..458004
/locus_tag="PPE_00416"
/db_xref="GeneID:9773174"
CDS 457654..458004
/locus_tag="PPE_00416"
/note="COGMatches:COG1937; PfamMatches:PF02583"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868810.1"
/db_xref="GI:308067205"
/db_xref="GeneID:9773174"
/translation="MAEEQPVSHTEVHENHCGTDGEKTVRKSHHSAEFKNSLVSRLNR
IEGQVRGIKGLIEKDTYCDDVLNQIAAVQSALNGVGKLLLEGHMKSCVIERMQAGEQE
VIDELLVTVKKLIR"
misc_feature 457756..458001
/locus_tag="PPE_00416"
/note="Staphylococcus aureus copper-sensitive operon
repressor (CsoR), and related domains; this family was
previously known as part of DUF156; Region:
SaCsoR-like_DUF156; cd10152"
/db_xref="CDD:197387"
misc_feature order(457756..457758,457765..457770,457777..457782,
457789..457791,457798..457803,457807..457812,
457819..457830,457834..457842,457846..457854,
457858..457863,457867..457872,457879..457884,
457891..457896,457900..457908,457912..457920,
457927..457929,457951..457956,457960..457989)
/locus_tag="PPE_00416"
/note="putative homotetramer interface [polypeptide
binding]; other site"
/db_xref="CDD:197387"
misc_feature order(457756..457758,457765..457770,457777..457782,
457789..457791,457798..457803,457807..457812,
457819..457830,457834..457842,457846..457854,
457858..457863,457867..457872,457879..457884,
457891..457893,457900..457902,457912..457914,
457969..457971,457978..457989)
/locus_tag="PPE_00416"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:197387"
misc_feature order(457834..457836,457912..457914,457969..457971)
/locus_tag="PPE_00416"
/note="allosteric switch controlling residues; other site"
/db_xref="CDD:197387"
misc_feature order(457837..457839,457912..457914,457924..457926)
/locus_tag="PPE_00416"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:197387"
misc_feature order(457894..457896,457903..457908,457915..457920,
457924..457929,457951..457956,457960..457968,
457972..457977)
/locus_tag="PPE_00416"
/note="putative homodimer-homodimer interface [polypeptide
binding]; other site"
/db_xref="CDD:197387"
gene 458060..458260
/locus_tag="PPE_00417"
/db_xref="GeneID:9773175"
CDS 458060..458260
/locus_tag="PPE_00417"
/note="COGMatches:COG2608; PfamMatches:PF00403;
PrositeMatches:PS50846; go_process: metal ion transport
(GO:0030001)"
/codon_start=1
/transl_table=11
/product="copper chaperone CopZ"
/protein_id="YP_003868811.1"
/db_xref="GI:308067206"
/db_xref="GeneID:9773175"
/translation="MAQVTLNVEGMSCNHCVKAVEGALEKVGATGKVSLETKQVNVEY
DESKLNVEALKTAIEDQGYDVV"
misc_feature 458072..458254
/locus_tag="PPE_00417"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature order(458090..458098,458105..458107)
/locus_tag="PPE_00417"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
gene 458376..460832
/locus_tag="PPE_00418"
/db_xref="GeneID:9773176"
CDS 458376..460832
/locus_tag="PPE_00418"
/EC_number="3.6.3.4"
/EC_number="3.6.3.-"
/note="COGMatches:COG2217; PfamMatches:PF00403, PF00122,
PF00702; PrositeMatches:PS00013, PS00154, PS01047,
PS50846, PS01229; go_process: metal ion transport
(GO:0030001), go_component: membrane (GO:0016020),
go_process: metabolism (GO:0008152)"
/codon_start=1
/transl_table=11
/product="ATPase P"
/protein_id="YP_003868812.1"
/db_xref="GI:308067207"
/db_xref="GeneID:9773176"
/translation="MENRATDGDKQTTLHITGMSCAACASRIEKGLNRIDGVAQANVN
LALEQASISYDPKQVEIPEFRDKIASLGFGTVSEEANLNVTGMTCAACATRIEKGLNQ
MPGVTGATVNLAMETAHVEYAAGSIAVGDLVSKIEQLGYGAIPQSAEDNIADVRRKDI
HRKKWKWIVSAVLSLPLLWAMVAHFSFTSWIYVPELFLNPWFQLVLTTPIQFVIGWQF
YVGAYKALRNGSSNMDVLVALGTSAAYFYSMYLTLRPSDVMEGMAGMPVMTMPELYYE
TSAVLITLILVGKWFEAVAKGRSSEAIKSLMSLQATTARVVRDGQELDIPIQQVRVQD
ILIVRPGEKIPVDGVVVDGRSAVDESMLSGESLPVEKEAGSAVTGATLNKNGVLRIQA
ERVGGDTALSRIIKVVEDAQNSKAPIQRIADQISGIFVPIVVAIAVLAFIVWFFLVTP
TDFAGSLEKMIAVLVIACPCALGLATPTSIMAGSGRAAEYGILFKGGEHLEMTRSVNA
VVLDKTGTVTNGKPELTDVMVGASGMAEEDLLRLLGAAEKSSEHPLAEAIVKGIADRG
IELVGPTDFGNIPGYGVKAHVEGKQVLAGTRRLMSREGIAIDDSAEQYMNELENAGKT
AMLVAVDGFYAGLVAVADTIKETSREAVTRLRAMNIEVIMITGDNERTARAVAAEAGI
ERVLAEVLPEGKAEEVKRLQEQGMIVAMVGDGINDAPALATANIGMAMGTGTDVAMEA
ADITLMRGNLNSIPDAIEMSRRTMTNIRQNLFWALGYNVIGIPIAALGFLAPWLAGAA
MAFSSVSVVLNALRLQRVKL"
misc_feature 458403..>458597
/locus_tag="PPE_00418"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: ZntA; COG2217"
/db_xref="CDD:32399"
misc_feature 458412..458597
/locus_tag="PPE_00418"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature order(458430..458438,458445..458447)
/locus_tag="PPE_00418"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature 458607..460820
/locus_tag="PPE_00418"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: ZntA; COG2217"
/db_xref="CDD:32399"
misc_feature 458619..458804
/locus_tag="PPE_00418"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature order(458634..458642,458649..458651)
/locus_tag="PPE_00418"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature 459213..459878
/locus_tag="PPE_00418"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:201018"
misc_feature <460290..460538
/locus_tag="PPE_00418"
/note="haloacid dehalogenase-like hydrolase; Region: HAD;
pfam12710"
/db_xref="CDD:205034"
gene 461118..461861
/locus_tag="PPE_00419"
/db_xref="GeneID:9773177"
CDS 461118..461861
/locus_tag="PPE_00419"
/EC_number="1.-.-.-"
/note="COGMatches:COG0778; PfamMatches:PF00881;
go_process: electron transport (GO:0006118)"
/codon_start=1
/transl_table=11
/product="nitro/flavin reductase"
/protein_id="YP_003868813.1"
/db_xref="GI:308067208"
/db_xref="GeneID:9773177"
/translation="MNDTISLLMNHRSVRKFKSDPITDEQLAAIVAAGQMASSSSNVQ
AYTVIAVTEPSLKTKLAELAGGQAYVEQCPAFLVWCADLYRLKQVTVHHQPGQPSYEG
SVENYTVATIDAALAAQNAAVAAESLGLGIVYIGGIRTKIAEVSELLGLPELVYPVFG
MCIGVPDQETGLRPRLPLSGVLHMNGYDKNQTMKAVEVYDHTSAEYLKERTGGQRSTP
WSEQMAARLTEPARLQLKPFLEQKGFLKQ"
misc_feature 461127..461813
/locus_tag="PPE_00419"
/note="This family contains NADPH-dependent flavin
reductase and oxygen-insensitive nitroreductase. These
enzymes are homodimeric flavoproteins that contain one FMN
per monomer as a cofactor. Flavin reductase catalyzes the
reduction of flavin by using NADPH as...; Region:
NfsA_FRP; cd02146"
/db_xref="CDD:48392"
misc_feature order(461127..461129,461139..461144,461148..461150,
461214..461216,461220..461231,461241..461243,
461247..461249,461253..461255,461259..461267,
461271..461276,461283..461285,461361..461363,
461442..461444,461463..461465,461472..461477,
461484..461486,461496..461498,461532..461534,
461562..461564,461637..461645,461658..461666,
461712..461714,461772..461774,461796..461804,
461811..461813)
/locus_tag="PPE_00419"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48392"
misc_feature order(461148..461150,461154..461156,461160..461162,
461316..461318,461322..461324,461523..461528,
461532..461537,461592..461594,461634..461636,
461640..461642)
/locus_tag="PPE_00419"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:48392"
misc_feature order(461160..461162,461241..461243,461532..461537,
461628..461630,461634..461636,461733..461738,
461745..461747)
/locus_tag="PPE_00419"
/note="NADPH bind site [chemical binding]; other site"
/db_xref="CDD:48392"
gene complement(461965..462774)
/locus_tag="PPE_00420"
/db_xref="GeneID:9773178"
CDS complement(461965..462774)
/locus_tag="PPE_00420"
/EC_number="3.1.21.-"
/note="COGMatches:COG0084; PfamMatches:PF01026"
/codon_start=1
/transl_table=11
/product="deoxyribonuclease"
/protein_id="YP_003868814.1"
/db_xref="GI:308067209"
/db_xref="GeneID:9773178"
/translation="MTAIGPAPLIDAHIHVDSYPPEQQELLLASLANSSVQAVIAVSM
HLGSSRANLQLAKRYPGLVRPAFGFHPEQALPPQAELDLLFDWMDEHVQQMVAVGEVG
LPYYNRLEASQSGSPFDLAPYIVLLEHFIQFASKHNKPIVLHAVYEDADIACDLLERH
GITQAHFHWFKGSAATTERMARNGYYVSFTPDLLYEEEIRSLARQYPSDQIMAETDGP
WPFEGPFTGQETHPRMTADVIRAYSKLTHQDESAVRQLFYENTRRFYSLSD"
misc_feature complement(461971..462762)
/locus_tag="PPE_00420"
/note="Predicted metal-dependent hydrolase of the
TIM-barrel fold [General function prediction only];
Region: COG3618"
/db_xref="CDD:33417"
misc_feature complement(461977..462750)
/locus_tag="PPE_00420"
/note="TatD like proteins; E.coli TatD is a cytoplasmic
protein, shown to have magnesium dependent DNase activity;
Region: TatD_DNAse; cd01310"
/db_xref="CDD:30053"
misc_feature complement(order(462127..462129,462271..462273,
462343..462345,462730..462732,462736..462738))
/locus_tag="PPE_00420"
/note="active site"
/db_xref="CDD:30053"
gene complement(462830..463780)
/locus_tag="PPE_00421"
/db_xref="GeneID:9773179"
CDS complement(462830..463780)
/locus_tag="PPE_00421"
/note="COGMatches:COG1116; PfamMatches:PF00005;
PrositeMatches:PS00211, PS50893; go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_003868815.1"
/db_xref="GI:308067210"
/db_xref="GeneID:9773179"
/translation="MSLHPTELSSHNVANEQRTGEQQRRSTAPPALELDGISLAFREK
RSLLPVLQDVSLTVKPGEFVSLIGPSGSGKSTLFHIIGGLLKPQQGRIRMHGRDMTGE
RGHISYMPQQPALFPWRTTLDNVLLGQENAPRKNTAVAPQYASERERRKEALQWLEQV
GLGKFAKAYPHTLSGGMQQRAAFLRALLSPQELMLLDEPFSALDALTRADMQQWLLRM
WEKNRRSVLFITHSIEEALLLSDRIYVLSARPASVVHVVDVPFPRPRREEITLDPLFM
EWKRTMTGWMREEKHKLDGDMDNAQSIHKNISEDGLNRHE"
misc_feature complement(462911..463696)
/locus_tag="PPE_00421"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:31313"
misc_feature complement(462998..463687)
/locus_tag="PPE_00421"
/note="NrtD and SsuB are the ATP-binding subunits of the
bacterial ABC-type nitrate and sulfonate transport
systems, respectively. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:73052"
misc_feature complement(463556..463579)
/locus_tag="PPE_00421"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(order(463088..463090,463187..463192,
463448..463450,463553..463561,463565..463570))
/locus_tag="PPE_00421"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73052"
misc_feature complement(463448..463459)
/locus_tag="PPE_00421"
/note="Q-loop/lid; other site"
/db_xref="CDD:73052"
misc_feature complement(463235..463264)
/locus_tag="PPE_00421"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73052"
misc_feature complement(463187..463204)
/locus_tag="PPE_00421"
/note="Walker B; other site"
/db_xref="CDD:73052"
misc_feature complement(463169..463180)
/locus_tag="PPE_00421"
/note="D-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(463082..463102)
/locus_tag="PPE_00421"
/note="H-loop/switch region; other site"
/db_xref="CDD:73052"
gene complement(463830..464606)
/locus_tag="PPE_00422"
/db_xref="GeneID:9773180"
CDS complement(463830..464606)
/locus_tag="PPE_00422"
/note="COGMatches:COG0600; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="nitrate/sulfonate/bicarbonate ABC transporter
permease"
/protein_id="YP_003868816.1"
/db_xref="GI:308067211"
/db_xref="GeneID:9773180"
/translation="MNPKGKNASWWKSVWPPFVAVLFFLAAWQGAVSYLHVESWLLPA
PSLIVQEGLAQTALLGAHTWATIRLTLAGFAIGTATGLLIAIILHTIPFLKSALYPLL
ILSQNIPIIALGPLLMVWFGFGVLPKLMVITLVCFFPVAVAAMDGLTRTDRTMMNYMR
MSGASRTAIFMKLELPHSLPQVFSGVKIAATYSVMGAIIAEWIGASEGIGYYMLLQKS
AYRTDLIFAAIGIIVALSLLMFVVILLLEKWLVRWKPDRE"
misc_feature complement(463842..464600)
/locus_tag="PPE_00422"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature complement(463905..464417)
/locus_tag="PPE_00422"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(463905..463910,463914..463919,
463926..463931,463959..463964,464001..464006,
464013..464024,464043..464045,464052..464057,
464097..464099,464148..464150,464157..464162,
464172..464174,464178..464183,464190..464192,
464196..464198,464202..464207,464253..464255,
464259..464264,464271..464300,464304..464315,
464355..464360,464367..464372))
/locus_tag="PPE_00422"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(464007..464024,464253..464297))
/locus_tag="PPE_00422"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(463929..463931,463959..463961,
463968..463970,464004..464006,464220..464222,
464253..464255))
/locus_tag="PPE_00422"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(464076..464078,464088..464093,
464109..464147))
/locus_tag="PPE_00422"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(464603..464896)
/locus_tag="PPE_00423"
/db_xref="GeneID:9773181"
CDS complement(464603..464896)
/locus_tag="PPE_00423"
/note="COGMatches:COG0011; PfamMatches:PF01910"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868817.1"
/db_xref="GI:308067212"
/db_xref="GeneID:9773181"
/translation="MANTLLSIQVIPKTPNNEDSYSYVDKAIEVIQRSGVKHQVNPLD
TTMEGELDELLKVVKEMHEALTEAGSPSVISQIKIAHNPQGISMNKLTEKYRP"
misc_feature complement(<464660..464878)
/locus_tag="PPE_00423"
/note="Domain of unknown function DUF77; Region: DUF77;
pfam01910"
/db_xref="CDD:202041"
gene complement(465270..466313)
/locus_tag="PPE_00424"
/db_xref="GeneID:9773182"
CDS complement(465270..466313)
/locus_tag="PPE_00424"
/note="COGMatches:COG0715; PrositeMatches:PS00013"
/codon_start=1
/transl_table=11
/product="nitrate/sulfonate/bicarbonate ABC transporter
substrate-binding protein"
/protein_id="YP_003868818.1"
/db_xref="GI:308067213"
/db_xref="GeneID:9773182"
/translation="MKRMKMLSLGLISLWLMALTLTACGGSPSTSQEAAPATNTQTST
PVKGLKDVKVVLDWTPNTNHTGLYVAKDKGFYEKAGLNVQIVQPGSGGADQMVASNAA
PFGISYQEGVTQARTQGVPLVSIAAVIQHNTSGFAAPVDRGIKSPKDFEGKKYGGWGS
PVEEAVMKSIMDSDKGDVSKVKIINMGNADYFTAVKRDIDFAWIFYAWTGIEAQLRGE
PLDMLYVKDYSKSLDYYTPVIVSNEQTIKNDPELVKAFMDATAQGYEYTIAHPEEAAD
ILSKAVPELDKKLVLASQKWLSPRYQDDAAQWGVQKAEVWQNYSDWMYERKLLSKPLE
VDKAFTNDFLPKR"
misc_feature complement(<465867..466142)
/locus_tag="PPE_00424"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
misc_feature complement(465492..466133)
/locus_tag="PPE_00424"
/note="NMT1/THI5 like; Region: NMT1; pfam09084"
/db_xref="CDD:192206"
gene 466486..466746
/locus_tag="PPE_00425"
/db_xref="GeneID:9773183"
CDS 466486..466746
/locus_tag="PPE_00425"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868819.1"
/db_xref="GI:308067214"
/db_xref="GeneID:9773183"
/translation="MVLYKKGTSCLSIPTLALPRSGCKGQCLGTHSQPADSSTPGIVW
FNGFIYSGLLRRLYALNAGLSSMEEEMAVHLPNDRVHFYCEL"
gene 466886..467320
/locus_tag="PPE_00426"
/db_xref="GeneID:9773184"
CDS 466886..467320
/locus_tag="PPE_00426"
/note="COGMatches:COG3871; PfamMatches:PF01243;
go_fucntion: FMN binding (GO:0010181)"
/codon_start=1
/transl_table=11
/product="general stress protein 26"
/protein_id="YP_003868820.1"
/db_xref="GI:308067215"
/db_xref="GeneID:9773184"
/translation="MGKTQTLDRNQLEQAIVKALDNNKFCSLGTVEGGKPKVRYMALF
NDGMNIHLATDRKTHKVDELKDNPNAYLLLGYEVGGTKEVVEVEATVQITADEGLRKQ
VWNDSLKEWFSGPDDPDYVILDVNPTRIEYVGQQTERQVWNK"
misc_feature 466919..>467113
/locus_tag="PPE_00426"
/note="Pyridoxamine 5'-phosphate oxidase; Region:
Pyridox_oxidase; pfam01243"
/db_xref="CDD:201681"
gene 467540..469642
/locus_tag="PPE_00427"
/db_xref="GeneID:9773185"
CDS 467540..469642
/locus_tag="PPE_00427"
/EC_number="3.1.4.16"
/note="COGMatches:COG0737; PfamMatches:PF00149, PF02872;
PrositeMatches:PS00785, PS00786; go_fucntion: hydrolase
activity (GO:0016787), go_process: nucleotide catabolism
(GO:0009166)"
/codon_start=1
/transl_table=11
/product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
/protein_id="YP_003868821.1"
/db_xref="GI:308067216"
/db_xref="GeneID:9773185"
/translation="MLFRKNWFKGFTAAVVACSMLVFSAAPSWAASNSRDDATVNLRI
LETTDIHASLMNYDYYSDKETNEYGLINTAGLIQQARSEARNSMLFDNGDLLQGNPLG
DYMARNKTFETEGGVHPVYKMMNLMGYDAATVGNHEFNYGLDFLEKSLKGADFPYVNA
NVYVDKGGQATKNYFTPYRILDKTVTDEKGQEHILRVGVIGLVTPQIMQWDEANLKDK
VVTKDIVEMAKKFIPQMKTEGADIIVVLAHTGYEDVPQTPMMENAVKYLSQVDGINAI
LFGHAHKSFPGPDFKDMKGVDLDKGTINGVPAVEASSWGKDLGIIDLSLEKKKSQWNV
VNSQSQVRPVVSTTNQAVQFTPDYKLTDAIKDEHKGTLDYIRQPVGTTTAPITSFFAL
VQDDPSIQIVTNAQKWYVQNHLKGTEYEKLPVLSAGAPFKAGGRNGAEYYTNIPEGTV
AIKNVSDLYVYPNTVHAVEVTGAEIQEWLEWSAGQFNRIDPKQTEEQSLINKDFPTYN
FDVIDGVDYQIDVTQPARYDAKGTIIDSSAHRIKDLQYNGKAIDPAQKFIVATNNYRA
SSSKLANPDGKRIVMAAPDESRQVIVDYIRTNGTINPSADGNWSIAPFGQAKVTFESS
PDAKDVLAGNQQISYLSSAADGFAKYSLKAGAKPSAATTPVKEAVAPAKAIAKPAVKT
TKPAAVKPAKTTKPKASK"
misc_feature 467561..469498
/locus_tag="PPE_00427"
/note="bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase periplasmic precursor
protein; Reviewed; Region: cpdB; PRK09420"
/db_xref="CDD:181840"
misc_feature 467663..468571
/locus_tag="PPE_00427"
/note="Escherichia coli CpdB and related proteins,
N-terminal metallophosphatase domain; Region: MPP_CpdB_N;
cd07410"
/db_xref="CDD:163653"
misc_feature order(467684..467686,467690..467692,467819..467821,
467945..467950,468281..468283,468377..468379,
468383..468385)
/locus_tag="PPE_00427"
/note="active site"
/db_xref="CDD:163653"
misc_feature order(467684..467686,467690..467692,467819..467821,
467945..467947,468281..468283,468377..468379,
468383..468385)
/locus_tag="PPE_00427"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163653"
misc_feature 468716..469240
/locus_tag="PPE_00427"
/note="5'-nucleotidase, C-terminal domain; Region:
5_nucleotid_C; pfam02872"
/db_xref="CDD:202440"
gene 469918..470979
/locus_tag="PPE_00428"
/db_xref="GeneID:9773186"
CDS 469918..470979
/locus_tag="PPE_00428"
/note="COGMatches:COG2200; PfamMatches:PF00563;
PrositeMatches:PS50883; go_fucntion: molecular function
unknown (GO:0005554)"
/codon_start=1
/transl_table=11
/product="EAL domain containing protein"
/protein_id="YP_003868822.1"
/db_xref="GI:308067217"
/db_xref="GeneID:9773186"
/translation="MACSNCSIILPIKDQGLLRIRHSRVSLTPALDGLGMLSEQLKQE
HGREGSIEFRFDSRSELEQLVNGLARLPQEYLNHIQVVMTGLHHVEGYEDWLLFSQLQ
ARLQHPDIVSIIKDQSFSSHMQPIVDHKQDIIGFEFLLRPSHAERPFQPFRLFEIARE
AGLHAHLDRSARISAIEKSATCLPAGIKRFINFLPSTIYNPAYCLNHIFETIDRLSMS
TKDFVFEVVETEEIDDLNFLHHIFDQYRNRGVLVALDDVGAGYSTTELMNCLQPDYVK
IDRSIIDGCHSNSDQKRQITGIVESAYRFGGQVLAEGVEQMEDFEFCREAGVSLAQGY
LFGKPEPGPPSNFILSSVI"
misc_feature 470242..470940
/locus_tag="PPE_00428"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene 471378..471635
/locus_tag="PPE_00430"
/db_xref="GeneID:9773187"
CDS 471378..471635
/locus_tag="PPE_00430"
/note="COGMatches:COG0604"
/codon_start=1
/transl_table=11
/product="NADPH:quinone reductase"
/protein_id="YP_003868823.1"
/db_xref="GI:308067218"
/db_xref="GeneID:9773187"
/translation="MKAVQLKNGFGFGELTLTELGIPVPGRLEVLIRIRAASLNYRDL
VIINGVMPIGIQFPFIPLSDGTGKGSRRMADNQLFGSSRVG"
misc_feature 471378..>471578
/locus_tag="PPE_00430"
/note="Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family;
Region: MDR; cl16912"
/db_xref="CDD:211475"
misc_feature 471378..>471578
/locus_tag="PPE_00430"
/note="NADPH:quinone reductase and related Zn-dependent
oxidoreductases [Energy production and conversion /
General function prediction only]; Region: Qor; COG0604"
/db_xref="CDD:30949"
gene 471568..471996
/locus_tag="PPE_00431"
/db_xref="GeneID:9773188"
CDS 471568..471996
/locus_tag="PPE_00431"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868824.1"
/db_xref="GI:308067219"
/db_xref="GeneID:9773188"
/translation="MERAKVLGAWQTINYSEVPEWDKVALELTGGGVDHVLDVGGATT
MAQSINALRTGGTVSMDGFLSGLTIPEFDVTSILQKAATIRGSQVGNREHFENMNRAI
FRHRLHPVIDRYSRSAESAKPSHFWLKENSISVKSSFKYK"
misc_feature <471568..471906
/locus_tag="PPE_00431"
/note="Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family;
Region: MDR; cl16912"
/db_xref="CDD:211475"
misc_feature <471571..471975
/locus_tag="PPE_00431"
/note="NADPH:quinone reductase and related Zn-dependent
oxidoreductases [Energy production and conversion /
General function prediction only]; Region: Qor; COG0604"
/db_xref="CDD:30949"
gene 472146..473303
/locus_tag="PPE_00432"
/db_xref="GeneID:9773189"
CDS 472146..473303
/locus_tag="PPE_00432"
/note="COGMatches:COG3386; PfamMatches:PF03088;
go_process: biosynthesis (GO:0009058)"
/codon_start=1
/transl_table=11
/product="gluconolactonase"
/protein_id="YP_003868825.1"
/db_xref="GI:308067220"
/db_xref="GeneID:9773189"
/translation="MPSKPDLSVKDSQGRKTKKPRKWLRRTGLSLLAVILLGVFIFML
IPSPVQPAKWLAPSSPSFEQAGPWQQNNKLSSAELVTDAPKFPEFITFDKEGNLYTGD
SDGKIYKVAFDTKGNPQKAQLYADTKGTPNGLMFDASGNLIVTDVKKGLLSVDPSGNV
TVLANQVDGTPIYLANELDIAKDGTVYFSDTSNYGSVVFKEIAENKPHGRLLKYDPAT
KQTTVLLEGLYFANGVALSEDEDFVLVAESYHYQLTRYWLKGPKKGTSDIFTDNLAGF
PDNITRDDQGHFWVGLFTTRIPFVDQMHGSPWLAGMMAKLPQSLLSGASAPVKHGLAV
ELNPQGKLIGSWHDPEGSLYGVTTAVNHGGYLYIGTAPGGSQGVHRVLLTK"
misc_feature 472377..473282
/locus_tag="PPE_00432"
/note="Gluconolactonase [Carbohydrate transport and
metabolism]; Region: COG3386"
/db_xref="CDD:33193"
misc_feature <472500..>472766
/locus_tag="PPE_00432"
/note="Protein Kinases, catalytic domain; Region:
PKc_like; cl09925"
/db_xref="CDD:213116"
misc_feature order(472581..472583,472587..472589,472593..472595,
472614..472616,472650..472661)
/locus_tag="PPE_00432"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:173623"
misc_feature order(472614..472622,472650..472661)
/locus_tag="PPE_00432"
/note="activation loop (A-loop); other site"
/db_xref="CDD:173623"
misc_feature 472671..472928
/locus_tag="PPE_00432"
/note="Strictosidine synthase; Region: Str_synth;
pfam03088"
/db_xref="CDD:111929"
gene 473321..474109
/locus_tag="PPE_00433"
/db_xref="GeneID:9773190"
CDS 473321..474109
/locus_tag="PPE_00433"
/EC_number="1.-.-.-"
/note="COGMatches:COG4221; PfamMatches:PF00106;
PrositeMatches:PS00061; go_process: metabolism
(GO:0008152)"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_003868826.1"
/db_xref="GI:308067221"
/db_xref="GeneID:9773190"
/translation="MILDELKLSWKAKESLAGKVALVTGASSGIGASVAKKLAKRGAY
VAVLARRQERLDELVRDLHQEELYEVMAIPADIQKAEDVQQAVHAILEHWGRLDIIVA
NAGFGYRSPLAEVELERWEELYKTNVHGLVLTLKYGLQPMREQSKGDVVIVSSIAAKE
VVAGGGLYSATKYGVSAIASALRLETSTQGIRVTAIHPGAVATEFSQVAGYPEQEIRA
FASSVLPLHPDDVAEAALYALEQPEHVSIPELTIMPSRQVQRFK"
misc_feature 473360..474094
/locus_tag="PPE_00433"
/note="Short-chain alcohol dehydrogenase of unknown
specificity [General function prediction only]; Region:
COG4221"
/db_xref="CDD:33946"
misc_feature 473375..474091
/locus_tag="PPE_00433"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature order(473393..473395,473399..473404,473408..473410,
473465..473473,473627..473635,473777..473785,
473822..473824,473834..473836,473912..473923)
/locus_tag="PPE_00433"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(473699..473701,473783..473785,473822..473824,
473834..473836)
/locus_tag="PPE_00433"
/note="active site"
/db_xref="CDD:187535"
gene complement(474405..475496)
/locus_tag="PPE_00434"
/db_xref="GeneID:9773191"
CDS complement(474405..475496)
/locus_tag="PPE_00434"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868827.1"
/db_xref="GI:308067222"
/db_xref="GeneID:9773191"
/translation="MNHRPKEPKDLIVETAVIPPNIHVDVESATEGGTRRLMLSDNPE
TLTHVTVPTEQATLWHDVVRTTTRTVKHRIFGWHYNKIGNAVKLGITVENRSAAKLEV
RHIERALKIVPEDGNWIIDVGQSIAKSCLAGTMERLKPADRHKFGKSTALLEEFELPE
GSLAGFIYDLTVEFAEGHGTLDYVIRTVISKDTQTDLRQIHTDALPPVPPPQAHPRGV
WSFSETNARMPEYVVGQSANYRACATKKLNGETPADLLFTGARSELGPALDNRGQFGT
IYNATIPIVNDSDEDRTVLIYANPRGGAFAGSVRVDDRVYGIPLLRDNTKVCRLADIS
VPPGRSSYDFSFMVAGSATTPLGLYVITL"
gene 475769..477466
/locus_tag="PPE_00435"
/db_xref="GeneID:9773192"
CDS 475769..477466
/locus_tag="PPE_00435"
/EC_number="3.2.1.10"
/note="COGMatches:COG0366; PfamMatches:PF00128;
go_process: carbohydrate metabolism (GO:0005975)"
/codon_start=1
/transl_table=11
/product="oligo-1,6-glucosidase (oligosaccharide
alpha-1,6-glucosidase)"
/protein_id="YP_003868828.1"
/db_xref="GI:308067223"
/db_xref="GeneID:9773192"
/translation="MPRKIWWKEAVVYQIYPISFQDSDGDGKGDLRGILSRLDYLCEL
GIDVIWICPVYKSPNHDNGYDISDYYAIMDEFGTMEDFDELLHQAHERGIKIMMDLVL
NHTSDEHPWFTESRSSKDNPKRDYYIWRTGKNGGYPNNWESYFSGSVWKYDKLTDEYY
MHLYSEHQPDLNWENEEMVSELYRMVEWWLKKGVDGFRFDAIAHIVKAEGLPDADNPD
KRTLVRAYQLFSNLEQVHVLLRMLNEKLLERYPLMTVGETSGLGPEQALDYVGNQRHE
LNMVFQFEHMFIDAQGLGTEKWKSKPWTLVELKKIMSSWQTVLHEEGWNANYLNNHDQ
PRALSRFANDGQYRVESAKMLATFTHMLEGTPYIYQGEEIGMTNIAFPSIDDYRDVET
LNYYEQQRKIGESEEQIMAEIWRKSRDNARTPMQWNAGPSAGFTDGEPWMKINDNYTH
INAEAERNNPDSIFHYYRKLIALRKQHEVIVYGEYKLLLPLDTELYVFTRMLGEERLL
VILNFFDRDPVYHWPEEDFPVAKAELLLSNYKPIQGEQLHALKLRPYEARVYKLTMK"
misc_feature 475784..477454
/locus_tag="PPE_00435"
/note="alpha,alpha-phosphotrehalase; Region:
trehalose_treC; TIGR02403"
/db_xref="CDD:162843"
misc_feature 475790..477196
/locus_tag="PPE_00435"
/note="Alpha amylase catalytic domain found in Sucrose
isomerases, oligo-1,6-glucosidase (also called isomaltase;
sucrase-isomaltase; alpha-limit dextrinase), dextran
glucosidase (also called glucan 1,6-alpha-glucosidase),
and related proteins; Region: AmyAc_SI_OligoGlu_DGase;
cd11333"
/db_xref="CDD:200472"
misc_feature order(475832..475834,475838..475840,475844..475846,
475856..475858)
/locus_tag="PPE_00435"
/note="Ca binding site [ion binding]; other site"
/db_xref="CDD:200472"
misc_feature order(475949..475951,475958..475960,476069..476071,
476078..476080,476201..476203,476258..476260,
476270..476272,476366..476368,476537..476539,
477020..477022)
/locus_tag="PPE_00435"
/note="active site"
/db_xref="CDD:200472"
misc_feature order(476366..476368,476537..476539,476765..476767)
/locus_tag="PPE_00435"
/note="catalytic site [active]"
/db_xref="CDD:200472"
misc_feature 477164..477448
/locus_tag="PPE_00435"
/note="Domain of unknown function (DUF3459); Region:
DUF3459; pfam11941"
/db_xref="CDD:204789"
gene complement(477452..477802)
/locus_tag="PPE_00436"
/db_xref="GeneID:9773193"
CDS complement(477452..477802)
/locus_tag="PPE_00436"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868829.1"
/db_xref="GI:308067224"
/db_xref="GeneID:9773193"
/translation="MDISKLAQKLPLASLKSIVKMLILTADDMDELTAKLSPLGVVIH
QHRNEQVLDISPQNIHKWNALQKLGVQPRQFIAFGNDANDIPMFREAHHAVMIHHHAE
LAAFATESKRLFHG"
misc_feature complement(<477515..>477772)
/locus_tag="PPE_00436"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:212620"
gene complement(477947..478744)
/locus_tag="PPE_00437"
/db_xref="GeneID:9773194"
CDS complement(477947..478744)
/locus_tag="PPE_00437"
/EC_number="3.5.1.-"
/note="COGMatches:COG0726; PfamMatches:PF01522;
go_process: carbohydrate metabolism (GO:0005975)"
/codon_start=1
/transl_table=11
/product="30.6 kDa protein in fuma 3'region precursor
(ORF2)"
/protein_id="YP_003868830.1"
/db_xref="GI:308067225"
/db_xref="GeneID:9773194"
/translation="MKRIFTLWLCIAVMGMLAVTAEPAWATQTVDGQPYHFGFKKSKG
GELPSIAQEGFMHLIERQGGIFLGDTTKKELFLTFDNGYENGYTPKVLDVLKAKKVPA
AFFVTGHFVKDQPALMRRMASEGHIIGNHSWSHPDMSTISSAEIRSELDRVRNASAEL
TGQKEMKYVRPPRGIFSEKALASCREAGYTSVFWSVAYKDWDTNIQQGTDYAYRQVMG
QLHPGAVILLHSVSKDNTEALASIIDEARKQGYEFKSLDDLKVKHYH"
misc_feature complement(477977..478648)
/locus_tag="PPE_00437"
/note="Catalytic NodB homology domain of Bacillus subtilis
polysaccharide deacetylase PdaA, and its bacterial
homologs; Region: CE4_BsPdaA_like; cd10948"
/db_xref="CDD:200572"
misc_feature complement(477965..478639)
/locus_tag="PPE_00437"
/note="delta-lactam-biosynthetic de-N-acetylase; Region:
spore_pdaA; TIGR02884"
/db_xref="CDD:131930"
misc_feature complement(order(478058..478060,478064..478066,
478142..478147,478163..478165,478226..478231,
478235..478237,478337..478354,478502..478513))
/locus_tag="PPE_00437"
/note="NodB motif; other site"
/db_xref="CDD:200572"
misc_feature complement(order(478058..478060,478064..478066,
478154..478156,478163..478165,478223..478231,
478340..478342,478352..478354,478499..478501,
478505..478507))
/locus_tag="PPE_00437"
/note="active site"
/db_xref="CDD:200572"
misc_feature complement(order(478058..478060,478145..478147,
478235..478237,478505..478507))
/locus_tag="PPE_00437"
/note="catalytic site [active]"
/db_xref="CDD:200572"
misc_feature complement(order(478340..478342,478352..478354))
/locus_tag="PPE_00437"
/note="Cd binding site [ion binding]; other site"
/db_xref="CDD:200572"
gene complement(478745..479032)
/locus_tag="PPE_00438"
/db_xref="GeneID:9773195"
CDS complement(478745..479032)
/locus_tag="PPE_00438"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868831.1"
/db_xref="GI:308067226"
/db_xref="GeneID:9773195"
/translation="MDTFLSSIMSPNSFRSHKYVRCSDLLHFFGMNDRIKSEYSSKFY
KVYYFDLIFMSICVLSLVNSRPCINQHDIADGMKYAEAYTPYPNGTEARGT"
gene 479007..480029
/locus_tag="PPE_00439"
/db_xref="GeneID:9773196"
CDS 479007..480029
/locus_tag="PPE_00439"
/note="COGMatches:COG1135; PfamMatches:PF00005;
PrositeMatches:PS00211, PS50893; go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="D-methionine transport ATP-binding protein metN"
/protein_id="YP_003868832.1"
/db_xref="GI:308067227"
/db_xref="GeneID:9773196"
/translation="MIELRNVSKTYVRKGLSIEALKNINIKVDKGDIFGFIGFSGAGK
STLIRLVNRLEKVTSGEVLVEGEQLDTYSTSGLRKVRKKIGMIFQHFNLLESKTVFDN
IAIPLVLLKRNKREIEGRVKELLAFIGLSDKANSYPNELSGGQKQRVGIARALASNPS
ILLCDEATSALDPQTTQSILDLLRKINKEYKITILIITHEMSVIQRICNKVAVMEKGE
IIEQGNVLEVFGQPQHPTTQSFVRTVIHDTVPESVLQTFEQQESQRIYKLEFIGQVAS
DPVVHELIRQHDIHVNILFANMTEIQETTIGYMTIQLRGGQHAVQQAVDFLKSKGVHI
QEVESL"
misc_feature 479007..480017
/locus_tag="PPE_00439"
/note="DL-methionine transporter ATP-binding subunit;
Provisional; Region: metN; PRK11153"
/db_xref="CDD:183001"
misc_feature 479007..479705
/locus_tag="PPE_00439"
/note="MetN (also known as YusC) is an ABC-type
transporter encoded by metN of the metNPQ operon in
Bacillus subtilis that is involved in methionine
transport. Other members of this system include the MetP
permease and the MetQ substrate binding protein. ABC...;
Region: ABC_MetN_methionine_transporter; cd03258"
/db_xref="CDD:73017"
misc_feature 479118..479141
/locus_tag="PPE_00439"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73017"
misc_feature order(479127..479132,479136..479144,479271..479273,
479499..479504,479601..479603)
/locus_tag="PPE_00439"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73017"
misc_feature 479262..479273
/locus_tag="PPE_00439"
/note="Q-loop/lid; other site"
/db_xref="CDD:73017"
misc_feature 479427..479456
/locus_tag="PPE_00439"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73017"
misc_feature 479487..479504
/locus_tag="PPE_00439"
/note="Walker B; other site"
/db_xref="CDD:73017"
misc_feature 479511..479522
/locus_tag="PPE_00439"
/note="D-loop; other site"
/db_xref="CDD:73017"
misc_feature 479589..479609
/locus_tag="PPE_00439"
/note="H-loop/switch region; other site"
/db_xref="CDD:73017"
misc_feature 479790..480017
/locus_tag="PPE_00439"
/note="NIL domain; Region: NIL; pfam09383"
/db_xref="CDD:204224"
gene 480026..480691
/locus_tag="PPE_00440"
/db_xref="GeneID:9773197"
CDS 480026..480691
/locus_tag="PPE_00440"
/note="COGMatches:COG2011; PfamMatches:PF00528;
PrositeMatches:PS50928; go_component: membrane
(GO:0016020)"
/codon_start=1
/transl_table=11
/product="metal ABC transporter permease"
/protein_id="YP_003868833.1"
/db_xref="GI:308067228"
/db_xref="GeneID:9773197"
/translation="MMITGTTITWDQLWEALYESVLMVSISLFIGALIGIPIGILLVI
TRPGGILENRWLHNILNPIINIVRSLPFIILLIAIIPLTRLIVNTSIGTSAAIVPLII
YIAPYIGRLVENSLLEVNPGILEAADAMGATPFQVIRYFLLPEAFSSLILSLTTAAIG
LIGATAMAGAVGGGGIGDLAIAYGYQRFDTLVMLITVIILVLFVQGVQSLGNLLSRKA
RRG"
misc_feature <480302..>480478
/locus_tag="PPE_00440"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(480389..480427,480443..480448,480458..480460)
/locus_tag="PPE_00440"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(480688..481062)
/locus_tag="PPE_00441"
/db_xref="GeneID:9773198"
CDS complement(480688..481062)
/locus_tag="PPE_00441"
/note="COGMatches:COG0789; PfamMatches:PF00376;
PrositeMatches:PS50937; go_component: intracellular
(GO:0005622)"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_003868834.1"
/db_xref="GI:308067229"
/db_xref="GeneID:9773198"
/translation="MLIAEVSKKFELSQDTLRYYERIGLIPRVNRNKSGIRDYTEEDC
RWVEYIKCMRGVGLPIEILIEYVRLFQQGDETMIARKELLIEQRKQLIAKMKDMENVL
ERMDYKITSYEQTIGEKEKHLI"
misc_feature complement(480694..481062)
/locus_tag="PPE_00441"
/note="Predicted transcriptional regulators
[Transcription]; Region: SoxR; COG0789"
/db_xref="CDD:31132"
misc_feature complement(480724..481062)
/locus_tag="PPE_00441"
/note="Helix-Turn-Helix DNA binding domain of the
MerR-like transcription regulators YyaN and YraB; Region:
HTH_YyaN; cd01109"
/db_xref="CDD:133384"
misc_feature complement(order(480952..480960,481009..481011,
481051..481059))
/locus_tag="PPE_00441"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133384"
misc_feature complement(order(480757..480762,480769..480771,
480781..480783,480799..480801,480811..480813,
480865..480867,480892..480897,480907..480909,
480916..480918))
/locus_tag="PPE_00441"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:133384"
gene complement(481162..482142)
/locus_tag="PPE_00442"
/db_xref="GeneID:9773199"
CDS complement(481162..482142)
/locus_tag="PPE_00442"
/EC_number="1.-.-.-"
/note="COGMatches:COG0667; PfamMatches:PF00248;
go_fucntion: oxidoreductase activity (GO:0016491)"
/codon_start=1
/transl_table=11
/product="oxidoreductase"
/protein_id="YP_003868835.1"
/db_xref="GI:308067230"
/db_xref="GeneID:9773199"
/translation="MDYVKLGNTGLDVSRLCLGCMGFGVAERWIHPWILDEERSRPII
KNALELGINFFDTANVYSDGTSEEIVGRALKDYANRDEIVLATKVHFRMHQGPNGAGL
SRKAIMSEIDKSLKRLGTDYVDLYQIHRWDYNTPIEETMEALHDVVKAGKARYIGASA
MYAWQFLKALHVAEKNGWTRFVSMQNHLNLLYREEEREMLPLCKEEKIGVIPYSPLAG
GRLTRDTQETTHRSETDQVAKSKYDATADTDRLIVEQVAAIAEKRGVPRVQIALAWLL
QKEPVTAPIIGATKTSHLEDAVAALSITLTPEEIALLEEPYVPHPVVGAQ"
misc_feature complement(481171..482142)
/locus_tag="PPE_00442"
/note="Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion];
Region: Tas; COG0667"
/db_xref="CDD:31011"
misc_feature complement(481198..482136)
/locus_tag="PPE_00442"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature complement(order(481252..481257,481264..481266,
481279..481290,481339..481341,481489..481506,
481588..481590,481663..481668,481753..481758,
481879..481881,481960..481962,481975..481977,
482080..482088))
/locus_tag="PPE_00442"
/note="active site"
/db_xref="CDD:119408"
misc_feature complement(order(481756..481758,481879..481881,
481960..481962,481975..481977))
/locus_tag="PPE_00442"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene 482418..485756
/locus_tag="PPE_00443"
/db_xref="GeneID:9773200"
CDS 482418..485756
/locus_tag="PPE_00443"
/note="PfamMatches:PF00395"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868836.1"
/db_xref="GI:308067231"
/db_xref="GeneID:9773200"
/translation="MLKLVNRNKWIASAMVLGIASGSIVSLPWVGGVQTAYAATADTQ
SVTGFVAQARTLGLMTGGKQGDFMAQKNLTRAEAAKILCSLFQLEVNNQPQTSFMDVS
SDAWGAPYIEAVRAARYMTGNGELFRPGDAITKEELIVSLVRAMDLQDASTANAQQNA
VQVARSYGLLSEDASATDLKNPLNRESGAEVFVSLLDHPVGEVKSEGNTVRIGNIPYQ
LEGSLQGLFGENNKAVLKGAKFDLNRNLRTLTGVNKLEINADGGVFDGKGVSFDGRLI
VNGSVTLKNMSSTGVLEIKGSGTQPVSAILENTAWSGVELGSKDAKLTATGTTKIDNL
TLKNDTSIVTEGSAAITRVSLQQGLGKLLVSGSIGLLDASQYVGVPFITLAKGATINQ
INLPEQKQLQDVIINYDAMKEAVSLVNGMKNSSSAGSVVTDTDSKDKKKHDSDIVSVD
RSQLETEVYAAKELLERAGEGGPDQALYPAAAKESLSIAINQAMLVMNNTAATQAEVD
QALSTLKQDVSVYTASVTEPVIGTQELVRLIQVASTTLEQNRMVGDEFPPLWDESLSQ
AIQFGNNVLEGNAPQNIVDREVTSLRRVIEVYKASVKLRDAYLHFLDVTDRVENLNTD
KARYKSLVSEGLSVYVNPLTTTEQLEEWTRKIEVATESFLVLQTVDFSVLKNTLQEAQ
IIYDQSSTQNTALYSLIQEYTEKMHTAMTQQDVLILNMELSQRLTEFTAPQPATTRER
LQQLIQDIHLKLLSNPVARNYLNTEMLSLEQQIGQANFALIMPVTPEEQLVISYNQLS
QAKGTYIEKYNEKRLQLRDEIIEMQTSINGILVQNSGTLSAEAQQALSSASEHASIFL
GLSNFELQDVVPVYEELQQVQSQYAAPVAVDTTLLNININLAINEVQTFGRHYTDQDN
EELQGQINQASLVLNNSDSTQLQVDQANTDLITAFSNYQSKWIVTDLDINELKTIADN
LLTANGTDPTTVHFQRVVDAYNHLDQYLPMPEIKKNYMNLEDAIQEFRCFVASQQQSS
GGATPPSDSNGTGNGDTSGGAMSPSDSNGTGSGDSSDGATPPSDSSGTGSGDSSGGAT
SPSDSSGDDSGSIPGGGNDEGMIP"
misc_feature 482706..482834
/locus_tag="PPE_00443"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 485919..489038
/locus_tag="PPE_00444"
/db_xref="GeneID:9773201"
CDS 485919..489038
/locus_tag="PPE_00444"
/note="COGMatches:COG3275; PfamMatches:PF00512, PF02518,
PF00072, PF06580; PrositeMatches:PS50110, PS50109;
go_component: membrane (GO:0016020), go_fucntion: ATP
binding (GO:0005524), go_process: regulation of
transcription, DNA-dependent (GO:0006355), go_component:
integral to membrane (GO:0016021)"
/codon_start=1
/transl_table=11
/product="regulator of cell autolysis"
/protein_id="YP_003868837.1"
/db_xref="GI:308067232"
/db_xref="GeneID:9773201"
/translation="MKKQGVLFFIILLLAVALPVYPLVSGVLSGNSHWKAHNGVIDLR
NWDPEKEGPVQLGGEWEFYPNKLVQPSSFHEMQQDKDWENHQSSSAKIVDVLGRWNQW
MPKGQATGYGTYHIRVLLPEKAENLYGIYMQNIRSASQVWIDGENVGASGIPSVSADK
GKQGNAPYVGFTAIDGHSADITVHVANYSYSSGGIIYPLLFGDYESITHSREIAMAED
TVLIAGFFIPTVFFIMLYLLRKKEKALLYLGCFCIAALFYILTHGEKLLVWGIPDLPY
EWILKIQSFSSTLFYYFLIRYVHLSTQIVMNRIVLRLYHITTALMLGMGLFLPTLILS
SFEAFILLFGVVSVGYVLLILIRGLLQRTDDAALLVISIMSILMIVVTSFVYILGWGD
VRGVTAYEMLIFVLAQTLLLAKRFVHSFMEVENLSRRLLTLDGLKDEFLANTSHELRT
PLHGIINIAQSMLDRYGTQFNEPQKHNLVLIANVGRRLSYLINDILDFSNLKNGRLAL
NRRPANVQAAVNSVLEVLGHTVGKKKLHFVKEWPHSLPKVDADEDRLIQILYNLLGNA
VKFTEEGEIVISAKAGTREMEISVKDTGSGIAQEHLPHIFEPFNRGANAEDEGYSGTG
LGLGIVRRLVELHGGHIRVESRLGKGSTFYFTMPLAQTGTLVHEAQKDVSSAVILQPG
VTSGQNVILHEEDALEQVQTVPYKVLAVDDDEVNLRVLEELLYTTGCSVVAVDHAEEA
LHMLNGRTRFDLVITDWMMPEMSGIELCRRIRERYSLSELPVLLLTARDLPGDIRAGF
MAGANDFLRKPVDAEELKARVRTLLNMRHSAEEAVRSEMAFLQAQIKPHFLYNALNVI
VSTVAVDPDKAAELLMELSQYLRGSFDFQNRENTVPLSKELELVESYVALEKARFEER
LQVTIEVGRNIRSLIPPLSIQPIVENAIRHGVMQRATGGTVRVVVQEDGTDFVVSVTD
DGVGIPAERLEQLLSEDHVSSSVGLRNIHRRLIHMYGEGLRIESNSMQGTTVSFRVPE
TISPRNTDE"
misc_feature 486579..487163
/locus_tag="PPE_00444"
/note="7TM diverse intracellular signalling; Region:
7TMR-DISM_7TM; pfam07695"
/db_xref="CDD:203729"
misc_feature <487194..487901
/locus_tag="PPE_00444"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 487224..487415
/locus_tag="PPE_00444"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(487236..487238,487248..487250,487260..487262,
487269..487271,487281..487283,487290..487292,
487347..487349,487359..487361,487368..487370,
487380..487382,487389..487391,487401..487403)
/locus_tag="PPE_00444"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 487254..487256
/locus_tag="PPE_00444"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 487581..487886
/locus_tag="PPE_00444"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(487599..487601,487611..487613,487620..487622,
487686..487688,487692..487694,487698..487700,
487704..487709,487788..487799,487845..487847,
487851..487853,487866..487871,487875..487877)
/locus_tag="PPE_00444"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 487611..487613
/locus_tag="PPE_00444"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(487698..487700,487704..487706,487788..487790,
487794..487796)
/locus_tag="PPE_00444"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 488037..488378
/locus_tag="PPE_00444"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 488040..488387
/locus_tag="PPE_00444"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(488049..488054,488184..488186,488208..488210,
488274..488276,488331..488333,488340..488345)
/locus_tag="PPE_00444"
/note="active site"
/db_xref="CDD:29071"
misc_feature 488184..488186
/locus_tag="PPE_00444"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(488193..488198,488202..488210)
/locus_tag="PPE_00444"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 488340..488348
/locus_tag="PPE_00444"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 488376..489011
/locus_tag="PPE_00444"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG3920"
/db_xref="CDD:33706"
misc_feature 488424..488675
/locus_tag="PPE_00444"
/note="Histidine kinase; Region: His_kinase; pfam06580"
/db_xref="CDD:203479"
misc_feature 488718..489002
/locus_tag="PPE_00444"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(488724..488726,488736..488738,488745..488747,
488826..488828,488832..488834,488838..488840,
488844..488849,488901..488909,488958..488960,
488964..488966,488979..488984,488988..488990)
/locus_tag="PPE_00444"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 488736..488738
/locus_tag="PPE_00444"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(488838..488840,488844..488846,488904..488906)
/locus_tag="PPE_00444"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 489195..490352
/locus_tag="PPE_00445"
/db_xref="GeneID:9773202"
CDS 489195..490352
/locus_tag="PPE_00445"
/note="COGMatches:COG3947; PfamMatches:PF00072, PF00486,
PF03704; PrositeMatches:PS50110; go_process: regulation of
transcription, DNA-dependent (GO:0006355)"
/codon_start=1
/transl_table=11
/product="chemotaxis protein CheY"
/protein_id="YP_003868838.1"
/db_xref="GI:308067233"
/db_xref="GeneID:9773202"
/translation="MKAILIDDERSALTYLERLLEADGRLTVMGKYTSAQAGLDHLAA
ERADIVFIDIGMPEMNGLEAAEWIQQLDSLIHIVFVTAYSEYAIEAFELQVLDYLLKP
VHARRLSKTLDRIAATLADPPSSSLGVTAEQSPKVKVRCFQKLEILEVGQEAVGAKPF
KWRTLKSQELFSFLLHHEGEWVSKEQLLDALWPEYHLDKAVVHLHTSIYQIRKALKER
MQDTKLEYNLDRYRLNRNGWITDVELFERGISEWAASGSGGTPRIESLLALYRGNYLE
EHDYPWAYAKRERLRSMYLACASELAREELRSGRTRQSVQRLLSLQQREPYSDDICGL
LLTAYAQLGDYTAAQKHYESFVRILEDELGIEPQQVTHQLYVQLKTQTLPA"
misc_feature 489195..490319
/locus_tag="PPE_00445"
/note="Response regulator containing CheY-like receiver
and SARP domains [Signal transduction mechanisms]; Region:
COG3947"
/db_xref="CDD:33728"
misc_feature 489204..489542
/locus_tag="PPE_00445"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(489213..489218,489351..489353,489375..489377,
489435..489437,489486..489488,489495..489500)
/locus_tag="PPE_00445"
/note="active site"
/db_xref="CDD:29071"
misc_feature 489351..489353
/locus_tag="PPE_00445"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(489360..489365,489369..489377)
/locus_tag="PPE_00445"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 489495..489503
/locus_tag="PPE_00445"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature order(489684..489686,489741..489746,489795..489797,
489804..489806,489834..489839)
/locus_tag="PPE_00445"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
misc_feature 489699..489866
/locus_tag="PPE_00445"
/note="Transcriptional regulatory protein, C terminal;
Region: Trans_reg_C; pfam00486"
/db_xref="CDD:201258"
gene complement(490887..492641)
/locus_tag="PPE_00446"
/db_xref="GeneID:9773203"
CDS complement(490887..492641)
/locus_tag="PPE_00446"
/EC_number="3.2.1.54"
/note="COGMatches:COG0366; PfamMatches:PF02903, PF00128;
go_process: carbohydrate metabolism (GO:0005975)"
/codon_start=1
/transl_table=11
/product="cyclomaltodextrinase"
/protein_id="YP_003868839.1"
/db_xref="GI:308067234"
/db_xref="GeneID:9773203"
/translation="MLLEAIYHHPKRNWAFGYNDETIFLRLRAKKNDLNTVHALTGDK
YDWDRTRQLVPMSKFATDGRFDYYECSVKPTHRRLKYGFLLEDGEKRIWMNEDDFTTQ
EPQNADSLFQYPFLNPIDILKPPAWVKDAVFYQIFPERFANGDPSISPEGAETWGGTP
QRDNFFGGDLQGILDHLDHLNELGINAIYMTPVFKATTNHKYDTEDYMEVDPHFGDKK
TLKKLVDACHERGIRVLLDAVFNHSGRTFKPFVDVQEKGEASPYKDWFHVHSFPLEVV
DGTPTYDTFGLEPMMPKLNTEHPEVKKYLLEVAKHWIEEIGIDGWRLDVADEVDHAFW
REFRTTVKQANPDAYILGEMWNESSEWLQGDQFDATMNYPFTYAVNDFFVKKVTDAQS
FAFAIGRQLARYPQQATEVAFNLLDSHDTPRLLTLCGDDKRLMRLAALFQFTYMGAPC
IYYGDEIGLDGDADPGCRKCMEWDTDKQDRELFDFYRELIALRKGHPVLRDQGSITFL
EAQPEGTSLAYERRNAEEVLLVLLNRSDEDHVFELDIPEQEWQLAFGESQWSIGAKGL
HAKLPPYGYAVLKAAPAQ"
misc_feature complement(490956..492626)
/locus_tag="PPE_00446"
/note="maltodextrin glucosidase; Provisional; Region:
PRK10785"
/db_xref="CDD:182728"
misc_feature complement(492297..492626)
/locus_tag="PPE_00446"
/note="N-terminal Early set domain associated with the
catalytic domain of cyclomaltodextrinase and
pullulan-degrading enzymes; Region: E_set_CDase_PDE_N;
cd02857"
/db_xref="CDD:199887"
misc_feature complement(order(492297..492302,492351..492356,
492402..492404,492408..492410,492615..492617))
/locus_tag="PPE_00446"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:199887"
misc_feature complement(491139..492254)
/locus_tag="PPE_00446"
/note="Alpha amylase catalytic domain found in
cyclomaltodextrinases and related proteins; Region:
AmyAc_CMD; cd11338"
/db_xref="CDD:200477"
misc_feature complement(order(491238..491240,491250..491252,
491382..491387,491577..491579,491583..491585,
491667..491672,491769..491771,491916..491918,
492036..492038,492042..492044))
/locus_tag="PPE_00446"
/note="active site"
/db_xref="CDD:200477"
misc_feature complement(order(491433..491435,491511..491513,
491574..491579,491637..491639,491646..491663,
491763..491765))
/locus_tag="PPE_00446"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:200477"
misc_feature complement(order(491382..491384,491583..491585,
491670..491672))
/locus_tag="PPE_00446"
/note="catalytic site [active]"
/db_xref="CDD:200477"
misc_feature complement(490908..491189)
/locus_tag="PPE_00446"
/note="Domain of unknown function (DUF3459); Region:
DUF3459; pfam11941"
/db_xref="CDD:204789"
gene 492793..493467
/locus_tag="PPE_00447"
/db_xref="GeneID:9773204"
CDS 492793..493467
/locus_tag="PPE_00447"
/note="COGMatches:COG0745; PfamMatches:PF00072, PF00486;
PrositeMatches:PS50110; go_process: regulation of
transcription, DNA-dependent (GO:0006355)"
/codon_start=1
/transl_table=11
/product="sensory transduction protein"
/protein_id="YP_003868840.1"
/db_xref="GI:308067235"
/db_xref="GeneID:9773204"
/translation="MKTNVLYIEDDQDIGAWTHQYLEERNYAVTWLRSGDGAVEAART
CQLVILDVMLPGLDGFTMGKRLKKEYPELPILMLSARTSIDDKLQGLDFADDYVTKPF
HPDELIARIEILLRRSGTVPEESLQLGHLSVFSPDNRIVNRDTGEEITLTGKQYHIFA
YLLRHLGQIMTKEQMYEAVWGDPYIDGDKTLMVHIRHLREKLEIEPAAPRIIETIRGV
GYRVKA"
misc_feature 492802..493464
/locus_tag="PPE_00447"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 492808..493137
/locus_tag="PPE_00447"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(492817..492822,492943..492945,492967..492969,
493027..493029,493081..493083,493090..493095)
/locus_tag="PPE_00447"
/note="active site"
/db_xref="CDD:29071"
misc_feature 492943..492945
/locus_tag="PPE_00447"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(492952..492957,492961..492969)
/locus_tag="PPE_00447"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 493090..493098
/locus_tag="PPE_00447"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 493189..493455
/locus_tag="PPE_00447"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(493246..493248,493303..493308,493360..493362,
493369..493371,493393..493398,493432..493434,
493447..493449)
/locus_tag="PPE_00447"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 493467..494897
/locus_tag="PPE_00448"
/db_xref="GeneID:9773205"
CDS 493467..494897
/locus_tag="PPE_00448"
/note="COGMatches:COG0642; PfamMatches:PF00672, PF00512,
PF02518; PrositeMatches:PS50885, PS50109; go_component:
membrane (GO:0016020), go_fucntion: ATP binding
(GO:0005524)"
/codon_start=1
/transl_table=11
/product="signal transduction histidine kinase"
/protein_id="YP_003868841.1"
/db_xref="GI:308067236"
/db_xref="GeneID:9773205"
/translation="MSRTRKDWRRLHPSSRPAQGGRFRSSLLFRYLVIIVVAMMLLPI
VLPATALIYSVLLNWGAELKPKNAYYPSATHTENSWHREAVALKGATPEQISAHLCKI
QQDLFPNSQIFWVDTAGLTRLELPTQPNMPKQWNAAQAIAFMKQASYKGPFTVIAFIG
GGKNDVNQGYMVLKVPRSFFEQPPTDSSMFMYYLFFIVLILGAFIFVSLLFFGGIRRR
LLQLQAAMSQRGEDGLPILVDTGRPDEIGKLEEAFNQMVEQLAESRGRERQEEELRKR
LVADLSHDIRTPLTVVRSHLYTLDGENLSSRGKQSITLMENKLKDLGSLIDNLLTYNL
LASGKYTMNNTPRDILRLVRECVASWYPVWEKEGFEVDIDLPEHSVVWNVDEQGFRRL
LDNLFQNVVRHAASGRFIGVQVQKDNGTEALVITDKGPGMEQQSSEKGAGIGLAITEL
LAREMNLEREIFSSSAGTRIRFLNKT"
misc_feature 494046..494246
/locus_tag="PPE_00448"
/note="HAMP domain; Region: HAMP; pfam00672"
/db_xref="CDD:189662"
misc_feature <494136..494882
/locus_tag="PPE_00448"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature order(494142..494147,494151..494153,494199..494204,
494208..494213,494220..494225,494229..494234,
494241..494246)
/locus_tag="PPE_00448"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 494295..494462
/locus_tag="PPE_00448"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(494295..494297,494307..494309,494319..494321,
494328..494330,494340..494342,494349..494351,
494397..494399,494409..494411,494418..494420,
494430..494432,494439..494441,494451..494453)
/locus_tag="PPE_00448"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 494313..494315
/locus_tag="PPE_00448"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 494631..494882
/locus_tag="PPE_00448"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(494649..494651,494661..494663,494670..494672,
494739..494741,494745..494747,494751..494753,
494757..494762,494790..494801,494847..494849,
494853..494855,494865..494870,494874..494876)
/locus_tag="PPE_00448"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 494661..494663
/locus_tag="PPE_00448"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(494751..494753,494757..494759,494790..494792,
494796..494798)
/locus_tag="PPE_00448"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 494957..495874
/locus_tag="PPE_00449"
/db_xref="GeneID:9773206"
CDS 494957..495874
/locus_tag="PPE_00449"
/note="COGMatches:COG1131; PfamMatches:PF00005;
PrositeMatches:PS00211, PS50893; go_fucntion: ATPase
activity (GO:0016887)"
/codon_start=1
/transl_table=11
/product="bacitracin transport ATP-binding protein bcrA"
/protein_id="YP_003868842.1"
/db_xref="GI:308067237"
/db_xref="GeneID:9773206"
/translation="MNEYIIETNSLSKIYKGRAAVNQLDLKIARGDIYGFLGPNGAGK
TTTIRMLLGLIRPTRGTIRIFGKDIRRHKLDILRKVGSLVEYPSYYGHLNAIENLEAI
RRILNVSKQNIAEVLEVVRLTKHAKRPVKGYSLGMKQRLGIAAALLGNPEVLILDEPT
NGLDPEGIQEMRTLIQAMPKQRGITVLVSSHLLSEVEHMANTVGIIREGELVFQNTIH
NLRQESAGGIRIVVSEPEAAQLIAREQGYHSVKDGSALDFENMNDATVALLVRRLVEN
THAVYRVEERRKSLEDMFMQVVGKGGASL"
misc_feature 494969..495856
/locus_tag="PPE_00449"
/note="ABC-type multidrug transport system, ATPase
component [Defense mechanisms]; Region: CcmA; COG1131"
/db_xref="CDD:31326"
misc_feature 494972..495598
/locus_tag="PPE_00449"
/note="The BcrA subfamily represents ABC transporters
involved in peptide antibiotic resistance. Bacitracin is
a dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multienzyme...; Region:
ABC_BcrA_bacitracin_resist; cd03268"
/db_xref="CDD:73027"
misc_feature 495068..495091
/locus_tag="PPE_00449"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73027"
misc_feature order(495077..495082,495086..495094,495209..495211,
495425..495430,495527..495529)
/locus_tag="PPE_00449"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73027"
misc_feature 495200..495211
/locus_tag="PPE_00449"
/note="Q-loop/lid; other site"
/db_xref="CDD:73027"
misc_feature 495353..495382
/locus_tag="PPE_00449"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73027"
misc_feature 495413..495430
/locus_tag="PPE_00449"
/note="Walker B; other site"
/db_xref="CDD:73027"
misc_feature 495437..495448
/locus_tag="PPE_00449"
/note="D-loop; other site"
/db_xref="CDD:73027"
misc_feature 495515..495535
/locus_tag="PPE_00449"
/note="H-loop/switch region; other site"
/db_xref="CDD:73027"
gene 495871..496587
/locus_tag="PPE_00450"
/db_xref="GeneID:9773207"
CDS 495871..496587
/locus_tag="PPE_00450"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868843.1"
/db_xref="GI:308067238"
/db_xref="GeneID:9773207"
/translation="MMLRALTADLLKARRKGIWFLVFLGPLGLVAMQGLNFGLRYDYL
IPRYKGHLWEFLMDNIAMFVPLALVLGATMVASMLANVEHMSNSWKQLLALPISKFSV
YMAKLTLAIGMLCVSCVLLTVGTWVLGMILGFGGEPAPVGELLRLGFWPLGGTLPMLV
LLLWLTVTFHNQALPVTLGITLGIGSLFASQLSEWFPLAWPQFAWVAPQAWMFASVGC
GTGVLLSLLTAAHFSRKDVA"
misc_feature 495874..496581
/locus_tag="PPE_00450"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:213123"
misc_feature 495892..496494
/locus_tag="PPE_00450"
/note="ABC-2 family transporter protein; Region:
ABC2_membrane_4; pfam12730"
/db_xref="CDD:205048"
gene 496587..497315
/locus_tag="PPE_00451"
/db_xref="GeneID:9773208"
CDS 496587..497315
/locus_tag="PPE_00451"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868844.1"
/db_xref="GI:308067239"
/db_xref="GeneID:9773208"
/translation="MFGGYVRLLSVEHMKMAKSPVWLLALVSPAIAVLIGLLANPGGN
WQVLLSAMLTVHALLFMPMLTAVFASLVCRFEHGGGGWKQLMSLPLSRTSLYAAKLAI
IMAMVGLTQLLFGGALLGVGAVQDMNGPIPWAVIAQSLLAGWVACLPLAALQLMVSFL
WSSFAAPLALNFVFTVPNILVANSQAYGPYYPWTQPLLAMMPSGRDNFGAFMVPTDTL
LTVIMGSFVVFTLAGLTVFRYKEI"
misc_feature 496608..497300
/locus_tag="PPE_00451"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:213123"
misc_feature 496614..497273
/locus_tag="PPE_00451"
/note="ABC-2 family transporter protein; Region:
ABC2_membrane_4; pfam12730"
/db_xref="CDD:205048"
gene complement(497388..498344)
/locus_tag="PPE_00452"
/db_xref="GeneID:9773209"
CDS complement(497388..498344)
/locus_tag="PPE_00452"
/EC_number="1.1.1.27"
/note="COGMatches:COG0039; PfamMatches:PF00056, PF02866;
PrositeMatches:PS00013; go_process: tricarboxylic acid
cycle intermediate metabolism (GO:0006100)"
/codon_start=1
/transl_table=11
/product="L-lactate dehydrogenase"
/protein_id="YP_003868845.1"
/db_xref="GI:308067240"
/db_xref="GeneID:9773209"
/translation="MKGKARKVAIVGAGMVGSSCAYSMVNQSICDEIMMIDRTYDRAL
AHALDLSHCMDFTSTRTKVRAGTYADCTDMDVVIITAGANPKPGQDRLSVLDDAVLIT
REIVTAIMEGGFDGIFVIAANPVDIVTYMVQSISGLPRNKVIGTGTSIDSSRLKTLLS
EVFSIDPRSVQGYALGEHGESQFVAWSHVTIGGKPLLHILRQHKERFSHVDLDDIARK
TRDAGWEIFTRKGATNFGIANALAYITRSILNDDGKIIAISAVLDGEYGHTDVCTGVP
AIIGSRGIQEVIELELSPEERAKFDASCHFISNNIRAISGLV"
misc_feature complement(497436..498344)
/locus_tag="PPE_00452"
/note="L-lactate dehydrogenase; Reviewed; Region: ldh;
PRK00066"
/db_xref="CDD:178836"
misc_feature complement(497412..498329)
/locus_tag="PPE_00452"
/note="L-2-hydroxyisocapronate dehydrogenases and some
bacterial L-lactate dehydrogenases; Region: HicDH_like;
cd05291"
/db_xref="CDD:133427"
misc_feature complement(order(497475..497480,497502..497504,
497580..497582,497586..497600,497763..497768,
497781..497783,497838..497840,497847..497849,
497853..497855,498165..498167,498252..498254,
498327..498329))
/locus_tag="PPE_00452"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:133427"
misc_feature complement(order(497811..497813,497907..497909,
497976..497984,498096..498107,498231..498236,
498297..498305))
/locus_tag="PPE_00452"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:133427"
misc_feature complement(order(497616..497618,497628..497630,
497637..497645,497655..497660,497841..497843,
497877..497879,497883..497888,498177..498182,
498189..498203,498207..498209,498264..498269,
498279..498281,498288..498293))
/locus_tag="PPE_00452"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133427"
misc_feature complement(order(497646..497648,497676..497678,
497811..497813,497883..497885,497976..497978,
498072..498074))
/locus_tag="PPE_00452"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133427"
gene 498880..499701
/locus_tag="PPE_00453"
/db_xref="GeneID:9773210"
CDS 498880..499701
/locus_tag="PPE_00453"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_003868846.1"
/db_xref="GI:308067241"
/db_xref="GeneID:9773210"
/translation="MEESKSTTEAAKQLGIGASTLRKYAAALEEQGYVFQRSANQSRM
FSAEDVECLKVMRRALREQHMTMEQAVQVVLERVTAPFQMEDEEFRLPPISDAESLTA
TWEEIMAAAEGREETVMQAQTTATVELTELQDEMNAQELSEEPMQLQAQEELQTFEPT
VEFRLEQAPVSVPTQESVEPQELAQMQDMVQTALLEMRSRLEELEAEHSRLVEKNISL
SNQLEDQKRWMKEKVDEERDRQLITNLRTYQGRQRKSRGSLLSWLGLAPRRRREA"
misc_feature 498895..499098
/locus_tag="PPE_00453"
/note="MerR HTH family regulatory protein; Region: MerR_1;
pfam13411"
/db_xref="CDD:205589"
misc_feature 498895..>499086
/locus_tag="PPE_00453"
/note="Helix-Turn-Helix DNA binding domain of
transcription regulators from the MerR superfamily;
Region: HTH_MerR-SF; cl02600"
/db_xref="CDD:207663"
misc_feature order(498895..498903,498943..498945,499000..499008)
/locus_tag="PPE_00453"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133389"
gene 499846..500667
/locus_tag="PPE_00454"
/db_xref="GeneID:9773211"
CDS 499846..500667
/locus_tag="PPE_00454"
/EC_number="2.7.11.1"
/note="COGMatches:COG0515; PfamMatches:PF00069;
PrositeMatches:PS00107, PS50011; go_process: protein amino
acid phosphorylation (GO:0006468)"
/codon_start=1
/transl_table=11
/product="serine/threonine protein kinase"
/protein_id="YP_003868847.1"
/db_xref="GI:308067242"
/db_xref="GeneID:9773211"
/translation="MFAWLRNAYESWMDYPKQPGDLLSGRYDVRSLLGMGSYGLTYLC
LDRHSGQEVAVKLPRPSKRAKAVQLLQREAHIMRQMEHPYIPKLLESVEHSNGIVVVM
EYISGMTLEELIFEQECSFTEQECVVYILELMERVLHVHERGYIHRDIRIPNVIHREG
KPYLIDFGLALAVGERQEDVFTQSMLEKRAPERQDVAVYSDLYDVGHLMLFMLYSSYE
PQPDQPPANWQEELKLSSPVRHMLERLFQIRPRYENSRQFMQELEEALLLLEVNP"
misc_feature 499924..500598
/locus_tag="PPE_00454"
/note="Serine/Threonine protein kinases, catalytic domain;
Region: S_TKc; smart00220"
/db_xref="CDD:197582"
misc_feature 499942..500481
