LOCUS NC_015726 3872936 bp DNA circular BCT 25-DEC-2012
DEFINITION Cupriavidus necator N-1 chromosome 1, complete sequence.
ACCESSION NC_015726
VERSION NC_015726.1 GI:339324158
DBLINK Project: 68689
BioProject: PRJNA68689
KEYWORDS .
SOURCE Cupriavidus necator N-1
ORGANISM Cupriavidus necator N-1
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Burkholderiaceae; Cupriavidus.
REFERENCE 1 (bases 1 to 3872936)
AUTHORS Poehlein,A., Kusian,B., Friedrich,B., Daniel,R. and Bowien,B.
TITLE Complete genome sequence of the type strain Cupriavidus necator N-1
JOURNAL J. Bacteriol. 193 (18), 5017 (2011)
PUBMED 21742890
REFERENCE 2 (bases 1 to 3872936)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2011) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3872936)
AUTHORS Poehlein,A., Kusian,B., Friedrich,B., Daniel,R. and Bowien,B.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2011) Goettingen Genomics Laboratory,
Georg-August-University Goettingen, Grisebachstr. 8, Goettingen,
Lower Saxony 37077, Germany
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP002877.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3872936
/organism="Cupriavidus necator N-1"
/mol_type="genomic DNA"
/strain="N-1"
/isolation_source="soil"
/culture_collection="ATCC:43291"
/db_xref="taxon:1042878"
/chromosome="1"
/country="USA: University Park, PA"
/note="type strain of Cupriavidus necator"
gene 101..1843
/gene="dnaA"
/locus_tag="CNE_1c00010"
/db_xref="GeneID:10920037"
CDS 101..1843
/gene="dnaA"
/locus_tag="CNE_1c00010"
/codon_start=1
/transl_table=11
/product="chromosomal replication initiator protein DnaA"
/protein_id="YP_004683852.1"
/db_xref="GI:339324159"
/db_xref="GeneID:10920037"
/translation="MQDFWQAAAAQLERELTPQQFKTWIKPLAPVAFDEETHALRIAA
PNRFKLDWVKSQFSGRITALACEYWEAQVSVQFVLDPAASGRAAAYMQPAQPGMDGHA
APGTGMAGYPGAQPMGGQVPFAMPGQPGYGEYPTPAAYGMGQPQYGNPVGMPSAAPVP
AGARAQAPGMGGQHPGQHHPQHGADMGEIDVVHMDPAEASARSYRVQPQQPQQPHPSH
QPHQQMGGATPMPGHQPSDTVHERSRLNPILTFDNFVTGKANQLARAAAIQVANNPGK
SYNPLYLYGGVGLGKTHLIHAIGNYMLLENPRARIRYIHAEQYVSDVVKAYQRKAFDE
FKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALIANRAQVIITSDTYPKEISGID
DRLISRFDSGLTVAIEPPELEMRVAILMKKAAAESVNVPEEVAFFVAKHLRSNVRELE
GALRKILAFSNFHGKDITIEVTREALKDLLTVQNRQISVENIQKTCADFYNIKVADMY
SKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQ
LNHELHVLEQTLKG"
misc_feature 104..295
/gene="dnaA"
/locus_tag="CNE_1c00010"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 848..1531
/gene="dnaA"
/locus_tag="CNE_1c00010"
/note="DnaA regulatory inactivator Hda; Region:
DnaA_homol_Hda; TIGR03420"
/db_xref="CDD:163254"
misc_feature 872..1303
/gene="dnaA"
/locus_tag="CNE_1c00010"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 953..976
/gene="dnaA"
/locus_tag="CNE_1c00010"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(956..979,1142..1144,1250..1252)
/gene="dnaA"
/locus_tag="CNE_1c00010"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 1130..1147
/gene="dnaA"
/locus_tag="CNE_1c00010"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature <1169..1531
/gene="dnaA"
/locus_tag="CNE_1c00010"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 1292..1294
/gene="dnaA"
/locus_tag="CNE_1c00010"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1565..1834
/gene="dnaA"
/locus_tag="CNE_1c00010"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1634..1636,1658..1663,1682..1684,1700..1708,
1733..1747,1754..1756,1763..1768)
/gene="dnaA"
/locus_tag="CNE_1c00010"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 2212..3327
/gene="dnaN"
/locus_tag="CNE_1c00020"
/db_xref="GeneID:10916393"
CDS 2212..3327
/gene="dnaN"
/locus_tag="CNE_1c00020"
/EC_number="2.7.7.7"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_004683853.1"
/db_xref="GI:339324160"
/db_xref="GeneID:10916393"
/translation="MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVS
FLSTDIEIQITTHAECGVGSDSIATTVAARKLLDILRAMPDGDVALSLNDKRMTVQSG
KSRFALQTLAAEEFPTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGML
LVVEGKKVMAVATDGHRLAYCGVELETEAVGVGARQEVIIPRKTILELQRLLEDNDDP
VQVQLAANQVKFTFANIELISKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTA
ILTTDKFKGVRCILDTHMLKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLA
NLKSEQVQVSLGDSNSSALITVPEDDNFKYVVMPMRI"
misc_feature 2212..3324
/gene="dnaN"
/locus_tag="CNE_1c00020"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature 2221..3321
/gene="dnaN"
/locus_tag="CNE_1c00020"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(2284..2286,2431..2433,2452..2454,2818..2820)
/gene="dnaN"
/locus_tag="CNE_1c00020"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(2434..2436,2443..2445,2518..2520,2524..2526,
3040..3042,3133..3138)
/gene="dnaN"
/locus_tag="CNE_1c00020"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(2728..2730,2734..2745,3184..3186,3310..3321)
/gene="dnaN"
/locus_tag="CNE_1c00020"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(2728..2730,2734..2739,2965..2967,3070..3072,
3109..3114,3193..3195,3310..3321)
/gene="dnaN"
/locus_tag="CNE_1c00020"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 3557..6082
/gene="gyrB"
/locus_tag="CNE_1c00030"
/db_xref="GeneID:10916394"
CDS 3557..6082
/gene="gyrB"
/locus_tag="CNE_1c00030"
/EC_number="5.99.1.3"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_004683854.1"
/db_xref="GI:339324161"
/db_xref="GeneID:10916394"
/translation="MTEQQNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGL
HHLVFEVLDNSIDEALAGYCTEIQVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSA
AEIAMTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKG
DVQNRIVETVTGPDGQPVEVSPMKIIGATDKRGTEVHFLADEEIFTNVEFHYEILSKR
IRELSFLNNGVHIKLVDQRTGKEEDFAFSGGVKGFVEYINRSKSVLHPTIFYANTEKD
GIAVEVAMQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEVAKKA
KVETTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVRLPVEELVGKALSDFLLET
PGDAKIICGKIVDAARAREAARKAREMTRRKGLMDGMGLPGKLADCQEKDPALSELFL
VEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLSSQEVLTLITALGTGIGK
DDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPDIIERGYVYIAQPPLYKIK
HGKEERYIKDDVELNAYLLKLAMEKAVLVRPDGTEINGDALTELARQYQLTEGVISRL
SRIVDTDALRAIADGVALDLDSAAAAEASAVALKAKLAEMHAKTLIGAAVNDDGTADV
YAQFDEKTDKHRLMIARRHHGNVRLSHLDADFVHGADYAALSNAAKTFQGLTPEGTKV
QRGEGEKLRDQTVNDFHGAMQWLLAEAERGVSRQRYKGLGEMNPEQLFETTLDVTQRR
LLKVQIEDAIAADQIFTTLMGDEVEPRRNFIESNALVARNIDV"
misc_feature 3575..6079
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="DNA gyrase subunit B; Provisional; Region: gyrB;
PRK14939"
/db_xref="CDD:184903"
misc_feature 3686..3997
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(3704..3706,3716..3718,3725..3727,3791..3793,
3797..3799,3803..3805,3809..3814,3941..3952)
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 3716..3718
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(3803..3805,3809..3811,3941..3943,3947..3949)
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 4298..4771
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 4451..4453
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(4625..4627,4634..4639,4643..4645)
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(4643..4645,4649..4651)
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 4892..5236
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(4910..4915,4922..4924,5132..5134,5138..5140,
5144..5146)
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(4910..4912,5132..5134)
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 5852..6046
/gene="gyrB"
/locus_tag="CNE_1c00030"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene complement(6758..7243)
/locus_tag="CNE_1c00040"
/db_xref="GeneID:10916395"
CDS complement(6758..7243)
/locus_tag="CNE_1c00040"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683855.1"
/db_xref="GI:339324162"
/db_xref="GeneID:10916395"
/translation="MSTASSTPRMPPATENGKNDGLSRIALQRWTRGSGLRIDGRQAL
QNLIHDVESGAADFQVILVYDVSRWGRFQDADESAYYEYICRRAGFQVAYCAEQFEND
GSTVSTIVKGVKRAMAGEYSRELSSKVFAGQCRLIEMGFRQGGPAGYGLQRSSRTSTE
S"
misc_feature complement(6848..>7144)
/locus_tag="CNE_1c00040"
/note="Serine Recombinase family, catalytic domain; a DNA
binding domain may be present either N- or C-terminal to
the catalytic domain. These enzymes perform site-specific
recombination of DNA molecules by a concerted, four-strand
cleavage and rejoining...; Region: Ser_Recombinase;
cd00338"
/db_xref="CDD:58115"
misc_feature complement(<6764..>7123)
/locus_tag="CNE_1c00040"
/note="Site-specific recombinases, DNA invertase Pin
homologs [DNA replication, recombination, and repair];
Region: PinR; COG1961"
/db_xref="CDD:32144"
misc_feature complement(order(7031..7033,7040..7045))
/locus_tag="CNE_1c00040"
/note="catalytic residues [active]"
/db_xref="CDD:58115"
gene 7570..8463
/locus_tag="CNE_1c00050"
/db_xref="GeneID:10916396"
CDS 7570..8463
/locus_tag="CNE_1c00050"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683856.1"
/db_xref="GI:339324163"
/db_xref="GeneID:10916396"
/translation="MGKNALLWGVAATLLTLTAPAHAVADWQELGAQFYTGNGFKQYS
NSTDMTTGAPTGASTHLDIFQLNYSNGWKYGATFFYFQNAFDHGNYRMYTQGWEFLSL
NKIFDADLSFGPIKEIRLAPGWQFATSKDYYAGTQNQGNAADYGAKMVYPAVDTRDLF
LGLDFPLKVPGFDYLGVSVGVYKDFQPKTRYTLQPSVNLYYRSTFFIGPTRWKAQGYA
QWYGARNARENSNYDAVAYFTTQDALLLDTGLLLWDRPDQFYAGVQLQWSHNTYGVKT
IEGVSKATNEFFPQLMFEWIF"
gene 8484..9533
/locus_tag="CNE_1c00060"
/db_xref="GeneID:10916397"
CDS 8484..9533
/locus_tag="CNE_1c00060"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683857.1"
/db_xref="GI:339324164"
/db_xref="GeneID:10916397"
/translation="MHLNRQIGNFPRVLRALGFFYAIYVACLPPAQAQPTPAPTQVKI
AAVLGSGPDDPWNATLISTWKQLRAAKPHGLAINDPVYTEGVFGSAAEAALRLYARKG
YDIIWAHANYTDEVRRIHAQYPNTLFVLTGAPNEPIGANVYLLYNRIYEPSYLAGIAA
GMLTRTGVVGAVAGFPTEDTNDAINAFFAGARSVRPDVKQKVSFIASWWDPPMATEAM
KAQVAGGVDQEFMLSSTFDVCKQQKVTCYGAYRDWSPVAPQNIATSALGNWTPGFKWI
LDEWHASRVGGKPLAGNMNKRYFGMAEGGAELAPFHDFPMPPQIAARISETRARIEAR
QQTVELDVSKPASSK"
misc_feature 8607..9521
/locus_tag="CNE_1c00060"
/note="Uncharacterized ABC-type transport system,
periplasmic component/surface lipoprotein [General
function prediction only]; Region: Med; COG1744"
/db_xref="CDD:31930"
misc_feature 8610..9398
/locus_tag="CNE_1c00060"
/note="Type 1 periplasmic binding fold superfamily;
Region: Periplasmic_Binding_Protein_Type_1; cl10011"
/db_xref="CDD:209116"
gene 9542..11092
/gene="rbsA"
/locus_tag="CNE_1c00070"
/db_xref="GeneID:10916398"
CDS 9542..11092
/gene="rbsA"
/locus_tag="CNE_1c00070"
/EC_number="3.6.3.17"
/codon_start=1
/transl_table=11
/product="ribose ABC transporter ATP-binding protein RbsA"
/protein_id="YP_004683858.1"
/db_xref="GI:339324165"
/db_xref="GeneID:10916398"
/translation="MQAIPHLRVRNLSKRFGNFTALGDVSIEIARGEMHCLLGENGAG
KSTLTSCLSGYLQADAGTIEVYGQALDIRSPMDARRAGIGKVFQHFVLANPLTVVENV
IAGSPQRGFLPRTAATRARLHERCRKYGLSLDLDCPVGDLDVGQQQWAEILKCLNTEV
DLLILDEPTAVLTPQESVQLFSVLRTLTGEGTTVVLITHKLDEVLQCDRVTVMRKGRV
IDTVEAARCTRDDLSTLMVGHATSTPRRGASSPGAPRLVLEGLSASAGRRPLHGIDLT
VHRGEIVGIAGVSGNGQKELFEVIAGARRATAGRLLCDGVDLTNHDPGTISRAGIGHI
PQDRFAEGLVGELSVADNLMLGRHRDPVFSRRGFLSRKRAEAFAQDCIDRFAISTRSV
HTKAGTLSGGNAQKIVIARELYQASKVVLANQPTRGVDVGVIESIYRLLLDKRNEGYA
ILLASDELDDLFNLCDRIAVMYEGRIAGIFDATQVTIAQIGHLMAGGAHIPPAPALQP
APCLKDLP"
misc_feature 9554..11029
/gene="rbsA"
/locus_tag="CNE_1c00070"
/note="ABC-type uncharacterized transport systems, ATPase
components [General function prediction only]; Region:
COG3845"
/db_xref="CDD:33636"
misc_feature 9560..10204
/gene="rbsA"
/locus_tag="CNE_1c00070"
/note="This family represents the domain I of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses...; Region: ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:72975"
misc_feature 9656..9679
/gene="rbsA"
/locus_tag="CNE_1c00070"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72975"
misc_feature order(9665..9670,9674..9682,9803..9805,10037..10042,
10136..10138)
/gene="rbsA"
/locus_tag="CNE_1c00070"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72975"
misc_feature 9794..9805
/gene="rbsA"
/locus_tag="CNE_1c00070"
/note="Q-loop/lid; other site"
/db_xref="CDD:72975"
misc_feature 9965..9994
/gene="rbsA"
/locus_tag="CNE_1c00070"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72975"
misc_feature 10025..10042
/gene="rbsA"
/locus_tag="CNE_1c00070"
/note="Walker B; other site"
/db_xref="CDD:72975"
misc_feature 10049..10060
/gene="rbsA"
/locus_tag="CNE_1c00070"
/note="D-loop; other site"
/db_xref="CDD:72975"
misc_feature 10124..10144
/gene="rbsA"
/locus_tag="CNE_1c00070"
/note="H-loop/switch region; other site"
/db_xref="CDD:72975"
misc_feature 10295..10969
/gene="rbsA"
/locus_tag="CNE_1c00070"
/note="This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses; Region: ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:72974"
gene 11089..12183
/locus_tag="CNE_1c00080"
/db_xref="GeneID:10916399"
CDS 11089..12183
/locus_tag="CNE_1c00080"
/codon_start=1
/transl_table=11
/product="inner-membrane translocator"
/protein_id="YP_004683859.1"
/db_xref="GI:339324166"
/db_xref="GeneID:10916399"
/translation="MNARLGRALTLGSLLSFPAAGHGRTVATLAAGTLVGLSVSALLL
VAGGYPLGAALSSLWSGAFGGFAEGLDTLRDATPLFLVALATIVSYRAQLWNVGQEGQ
LVLGAIFCYGATLLAAGLPQPLPWLLPLCAGVAGGALWSTPPALARVRWGVNEIVSTM
MFNYIAVFLLMYLVGHVWPESSATYLQTAPIGAPAHLPAWNAEGTLNAQFLIAAVVAL
ALAVLFGRSVLGFEILSFGLNARTSAFKGIAAGATCLKVFAISGGIAGLCGAVMLLGT
QWRLAPATLASGVGYSGIMVAMLGRLHPAGALLAALLFGALNTGSAAMQLEAGVPSTM
ARVMQAVLLISFLLAQAINQAQPAKRGRDA"
misc_feature 11314..12129
/locus_tag="CNE_1c00080"
/note="Transmembrane subunit (TM) of Treponema pallidum
(Tp) RbsC-1, RbsC-2 and related proteins. This is a
functionally uncharacterized subgroup of TMs which belong
to a larger group of TMs of Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette; Region:
TM_PBP1_transp_TpRbsC_like; cd06580"
/db_xref="CDD:119322"
misc_feature 11809..11865
/locus_tag="CNE_1c00080"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119322"
gene 12176..13114
/gene="rbsC"
/locus_tag="CNE_1c00090"
/db_xref="GeneID:10916400"
CDS 12176..13114
/gene="rbsC"
/locus_tag="CNE_1c00090"
/codon_start=1
/transl_table=11
/product="sugar ABC transporter permease"
/protein_id="YP_004683860.1"
/db_xref="GI:339324167"
/db_xref="GeneID:10916400"
/translation="MHDLLNNAVAVGLLAAAVRMLTPLLLAAAGELVAEKAGIMNLGV
EGTMMTGCFVAFLVTFLSGSLALGIAAAVLSGAALGGLMAFATVTLRIEQFIMGLAIN
LLSSALTAYGFRALLKQVPAEQAVIEPLSTLRIPGLADLPLVGEALFNQTWMTYLAYL
MVPAIALLLYRTRLGLELRSLGENPKLLDTAGHSVGVPRYGAVIFGGAMAGLAGAALS
AGSSMRFVEEMTAGRGWIVIVIVVAANWRVWRVPLVTAVFALLQAAQLQAQANGVAFP
YEILLALPYIAAVGIMIAFRSSSRMPSALGVPYRRQ"
misc_feature 12290..13108
/gene="rbsC"
/locus_tag="CNE_1c00090"
/note="Uncharacterized ABC-type transport system, permease
component [General function prediction only]; Region:
COG1079"
/db_xref="CDD:31277"
misc_feature 12731..12787
/gene="rbsC"
/locus_tag="CNE_1c00090"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119320"
gene complement(13178..14170)
/gene="ptxR"
/locus_tag="CNE_1c00100"
/db_xref="GeneID:10916401"
CDS complement(13178..14170)
/gene="ptxR"
/locus_tag="CNE_1c00100"
/codon_start=1
/transl_table=11
/product="HTH-typetranscriptional regulator PtxR"
/protein_id="YP_004683861.1"
/db_xref="GI:339324168"
/db_xref="GeneID:10916401"
/translation="MNFLLDLQAAGDGATNVIDLKMVEAFALVMRHGSLTSAENASGV
PKATLRRHLMRLESALGVQLFVRTAGKPVPTEAARDFYANCTRLLGELQAGLEQASLA
ARELGGGERGHLSIVATSHLSTSYVNHVLRRYVQTHPEVVCHVDLVSDSSAAIGNDID
CYVCSVPRTDLELAARLLGRLTYRLYASQEYVGTHGAPATPSDLARHKLLVQDEQRGE
IALRTGDGAWQSLGQLNIAASSNDLWVIKTMAARHHGIALLPEFFVHGEVAAGSLQPI
LPHWEAPSLPVYCMYPRQRFMNRKLRAFIDMMVDSFGKIESCSYYLVGSASSAG"
misc_feature complement(13229..14119)
/gene="ptxR"
/locus_tag="CNE_1c00100"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(13934..14113)
/gene="ptxR"
/locus_tag="CNE_1c00100"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(13247..13837)
/gene="ptxR"
/locus_tag="CNE_1c00100"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA and its related
homologs, contains the type 2 periplasmic binding domain;
Region: PBP2_CrgA_like; cd08422"
/db_xref="CDD:176114"
misc_feature complement(order(13310..13312,13391..13393,13442..13444,
13628..13630,13634..13636,13676..13678,13793..13795,
13805..13807))
/gene="ptxR"
/locus_tag="CNE_1c00100"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176114"
misc_feature complement(order(13415..13417,13424..13429,13448..13462,
13547..13549,13724..13741,13748..13750,13754..13756,
13766..13768,13775..13780,13784..13789,13799..13804))
/gene="ptxR"
/locus_tag="CNE_1c00100"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176114"
gene complement(14172..15149)
/locus_tag="CNE_1c00110"
/db_xref="GeneID:10916402"
CDS complement(14172..15149)
/locus_tag="CNE_1c00110"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_004683862.1"
/db_xref="GI:339324169"
/db_xref="GeneID:10916402"
/translation="MPPARTDATMPDLKLIEAFVFAMRYGSLSAAEAQSGVPKATLSR
LIARLEESLGAELLLRSARGTVPTEAGQQFYVRAQRMLDAVSAEYEAAAAAVQNLSSD
ISGELCIATPSYLSSSFVTYVVSRYMQLHPNIVCRLTLVSDPVTDISRDIDCYVTSRP
PLGPHLASRQLGTLRLRLFASAGYLARYGAPAAPADLARHKALILRRHAPTIALQLSR
DGVTESCLVPVASSTNDYWILKSMAIDGYGIAVLPDFFAQPEVDGGMLQVVLPEWEAP
ALPVHCTYHAQRQIGRKLGALLDLMADAFTRIHALHVYIAGGAATSRTG"
misc_feature complement(14229..15119)
/locus_tag="CNE_1c00110"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(14934..15113)
/locus_tag="CNE_1c00110"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(14247..14837)
/locus_tag="CNE_1c00110"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA and its related
homologs, contains the type 2 periplasmic binding domain;
Region: PBP2_CrgA_like; cd08422"
/db_xref="CDD:176114"
misc_feature complement(order(14310..14312,14391..14393,14442..14444,
14628..14630,14634..14636,14676..14678,14793..14795,
14805..14807))
/locus_tag="CNE_1c00110"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176114"
misc_feature complement(order(14415..14417,14424..14429,14448..14462,
14547..14549,14730..14750,14754..14756,14766..14768,
14775..14780,14784..14789,14799..14804))
/locus_tag="CNE_1c00110"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176114"
gene complement(15266..16345)
/gene="add1"
/locus_tag="CNE_1c00120"
/db_xref="GeneID:10916403"
CDS complement(15266..16345)
/gene="add1"
/locus_tag="CNE_1c00120"
/EC_number="3.5.4.4"
/codon_start=1
/transl_table=11
/product="adenosine deaminase"
/protein_id="YP_004683863.1"
/db_xref="GI:339324170"
/db_xref="GeneID:10916403"
/translation="MARCGQHRHTQLSFPIMDDHKRLDFIHALPKVELHVHLEGAIAP
ERLLMLGRRNGIALPYDTVAQVRAAHAFSNLDEFLGHFGAVCSVLNTSEDFADAVLDL
GADARRQNIHYREVMFTLAQHQRRGIPLEAVVAGLQIGRQRCREQHGVEIAFIADIDR
TMSAAEARAMVDSLATFSLSAGVVAVGMDGQEVGISPATHRDAFLRARELGFHTTAHL
GWDEDPEAIWEALDALPLERIDHGLRAVEDPRLIDVLVQRQIPLTLCPLSSLAVEPGR
YPDLAAHPLREMWRRGAAVTLNSDDPMMIGQDLLANYIDVARAYHLQRDDLVRLAGNG
MRAAFVPEHLKREWLQQLDRYAAPS"
misc_feature complement(15275..16279)
/gene="add1"
/locus_tag="CNE_1c00120"
/note="adenosine deaminase; Provisional; Region: PRK09358"
/db_xref="CDD:181797"
misc_feature complement(15278..16279)
/gene="add1"
/locus_tag="CNE_1c00120"
/note="Adenosine deaminase [Nucleotide transport and
metabolism]; Region: Add; COG1816"
/db_xref="CDD:32001"
misc_feature complement(order(15446..15448,15623..15625,15695..15697,
16235..16237,16241..16243))
/gene="add1"
/locus_tag="CNE_1c00120"
/note="active site"
/db_xref="CDD:30035"
gene complement(16483..17322)
/gene="fghA"
/locus_tag="CNE_1c00130"
/db_xref="GeneID:10916404"
CDS complement(16483..17322)
/gene="fghA"
/locus_tag="CNE_1c00130"
/EC_number="3.1.2.12"
/codon_start=1
/transl_table=11
/product="S-formylglutathione hydrolase FghA"
/protein_id="YP_004683864.1"
/db_xref="GI:339324171"
/db_xref="GeneID:10916404"
/translation="MIELLSEHMCHGGRQQLYSHTSAATGLPMRFSAYLPPAAAHGPV
PALIYLAGLTCNEETFVIKAGAQRFAARHGLMLIAPDTSPRGAGIEQASTDSDFGLAA
SFYVDAVTAPWSRHFRMESYIALELPELIESALPVARGRIGIMGHSMGGHGALMLALR
HPGRFRSVSALAPIAAPTQCPWGRKAFAGYFGGDVAAWADHDASQLMAAASTPYPQGI
LVDQGMDDPFLASQLHPSSFEDACRQARQPLELRRHPGYDHGYFFIMSFIGDHIAHHA
AQL"
misc_feature complement(16486..17319)
/gene="fghA"
/locus_tag="CNE_1c00130"
/note="Predicted esterase [General function prediction
only]; Region: COG0627"
/db_xref="CDD:30972"
misc_feature complement(16486..17316)
/gene="fghA"
/locus_tag="CNE_1c00130"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene complement(17384..18361)
/gene="vanB"
/locus_tag="CNE_1c00140"
/db_xref="GeneID:10916405"
CDS complement(17384..18361)
/gene="vanB"
/locus_tag="CNE_1c00140"
/EC_number="1.14.13.82"
/codon_start=1
/transl_table=11
/product="vanillate O-demethylase"
/protein_id="YP_004683865.1"
/db_xref="GI:339324172"
/db_xref="GeneID:10916405"
/translation="MDTIRTVIRRKYPVAEDIIALELVAEHGGALPAFAAGAHIDLHL
PARGGGKPLIRQYSLCNGPDEAGCYLLGIKREPGSRGGSLAVHDHLREGDVLTIGMPR
NHFALAEGGPSLLFGAGIGITPLLAMVLQLRAARRPFTLHYFARSPAHVAFHERLVHA
SQAGQVHYHFGLSPEQTHDALRGAIAQATPATHVYSCGPSAFMDGVMQLARRVLPDTQ
IHYEYFQAAANVAGQGSADAPFEVVAARRGVHCMVPPGMSIVQALYAQGIEIEVSCEQ
GVCGTCMARVLEGTPDHRDVYLTEAEKATGDVVMPCCSRALTARLVLDV"
misc_feature complement(17573..18358)
/gene="vanB"
/locus_tag="CNE_1c00140"
/note="Flavodoxin reductases (ferredoxin-NADPH reductases)
family 1 [Energy production and conversion]; Region: Hmp;
COG1018"
/db_xref="CDD:31221"
misc_feature complement(17687..18337)
/gene="vanB"
/locus_tag="CNE_1c00140"
/note="Phthalate dioxygenase reductase (PDR) is an
FMN-dependent reductase that mediates electron transfer
from NADH to FMN to an iron sulfur cluster. PDR has an an
N-terminal ferrredoxin reductase (FNR)-like NAD(H)
binding domain and a C-terminal iron-sulfur; Region:
PDR_like; cd06185"
/db_xref="CDD:99782"
misc_feature complement(order(17690..17692,17993..17995,18113..18118,
18122..18124,18140..18148,18188..18190,18194..18199))
/gene="vanB"
/locus_tag="CNE_1c00140"
/note="FMN-binding pocket [chemical binding]; other site"
/db_xref="CDD:99782"
misc_feature complement(order(18188..18193,18197..18199))
/gene="vanB"
/locus_tag="CNE_1c00140"
/note="flavin binding motif; other site"
/db_xref="CDD:99782"
misc_feature complement(order(18083..18085,18104..18106,18113..18115,
18122..18124))
/gene="vanB"
/locus_tag="CNE_1c00140"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99782"
misc_feature complement(order(17990..17992,17996..18007,18017..18019))
/gene="vanB"
/locus_tag="CNE_1c00140"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99782"
misc_feature complement(order(17765..17770,17924..17932,17999..18004))
/gene="vanB"
/locus_tag="CNE_1c00140"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99782"
misc_feature complement(17408..17641)
/gene="vanB"
/locus_tag="CNE_1c00140"
/note="2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions. The
family includes plant and algal ferredoxins, which act as
electron carriers in photosynthesis...; Region: fer2;
cd00207"
/db_xref="CDD:29262"
misc_feature complement(order(17426..17431,17516..17527,17531..17533,
17540..17542,17549..17554))
/gene="vanB"
/locus_tag="CNE_1c00140"
/note="catalytic loop [active]"
/db_xref="CDD:29262"
misc_feature complement(order(17426..17428,17516..17518,17525..17527,
17540..17542))
/gene="vanB"
/locus_tag="CNE_1c00140"
/note="iron binding site [ion binding]; other site"
/db_xref="CDD:29262"
gene complement(18383..19012)
/gene="gst"
/locus_tag="CNE_1c00150"
/db_xref="GeneID:10916406"
CDS complement(18383..19012)
/gene="gst"
/locus_tag="CNE_1c00150"
/EC_number="2.5.1.18"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase Gst"
/protein_id="YP_004683866.1"
/db_xref="GI:339324173"
/db_xref="GeneID:10916406"
/translation="MIKLYNYELSGNCYKLRLMMHLLGVAYTSVAVDFHPGREHRSEA
FLAINPFGQLPVIEDGDYRLRDAQAILVYLASRYDETLSWFPMDPEARGQVVSWLAVA
DDITRTASAARLHDALGYQLDVETARRDAHVLFRRIDDHLAEAEIAGRGWLVGGSATI
ADIACFPYVALSHEGGIARDSYPALRRWIERVRRLDGFIGMPGIFAIAL"
misc_feature complement(18407..19009)
/gene="gst"
/locus_tag="CNE_1c00150"
/note="Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones]; Region: Gst;
COG0625"
/db_xref="CDD:30970"
misc_feature complement(18788..19009)
/gene="gst"
/locus_tag="CNE_1c00150"
/note="GST_N family, unknown subfamily 4; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of...; Region:
GST_N_4; cd03056"
/db_xref="CDD:48605"
misc_feature complement(order(18797..18802,18809..18811,18947..18952,
18959..18964,18968..18973,18977..18979))
/gene="gst"
/locus_tag="CNE_1c00150"
/note="putative C-terminal domain interface [polypeptide
binding]; other site"
/db_xref="CDD:48605"
misc_feature complement(order(18812..18817,18848..18856,18977..18979))
/gene="gst"
/locus_tag="CNE_1c00150"
/note="putative GSH binding site (G-site) [chemical
binding]; other site"
/db_xref="CDD:48605"
misc_feature complement(order(18797..18799,18806..18811,18815..18820,
18854..18856))
/gene="gst"
/locus_tag="CNE_1c00150"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:48605"
misc_feature complement(18419..18730)
/gene="gst"
/locus_tag="CNE_1c00150"
/note="C-terminal, alpha helical domain of an unknown
subfamily 7 of Glutathione S-transferases; Region:
GST_C_7; cd03206"
/db_xref="CDD:198315"
misc_feature complement(order(18500..18502,18512..18514,18521..18526,
18533..18535,18704..18706,18725..18727))
/gene="gst"
/locus_tag="CNE_1c00150"
/note="putative N-terminal domain interface [polypeptide
binding]; other site"
/db_xref="CDD:198315"
misc_feature complement(order(18602..18604,18701..18703,18710..18715,
18722..18727))
/gene="gst"
/locus_tag="CNE_1c00150"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:198315"
misc_feature complement(order(18500..18502,18509..18511,18680..18685,
18689..18694,18704..18706))
/gene="gst"
/locus_tag="CNE_1c00150"
/note="putative substrate binding pocket (H-site)
[chemical binding]; other site"
/db_xref="CDD:198315"
gene complement(19040..19909)
/locus_tag="CNE_1c00160"
/db_xref="GeneID:10916407"
CDS complement(19040..19909)
/locus_tag="CNE_1c00160"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683867.1"
/db_xref="GI:339324174"
/db_xref="GeneID:10916407"
/translation="MMKPYIDPALAGEWLVAAASASVAPGQTFQACVLGQAIAVTRDM
AGGLRAQVRHDDASAQPEEIRVLEQYATIWIAFETPTRPLFAIDEFDQPGRRIIPCGA
IGVHTSGLRIVENFLDMAHFPYVHTDWLGKEPHSAVAEYKVEWRQATDELWATDCRFW
QPRAAPSADGGLDIVYTYRVMQPFTTMLYKSCPTRPGDVDFILLQVQPQDEEHSLVYS
LLGYFDDVSSNAEMISFMQLIFAQDKPILESQVPRRLPLDPRTEVPARADAMSIAYRR
WLRDKRLRFGVHA"
misc_feature complement(19049..19870)
/locus_tag="CNE_1c00160"
/note="Phenylpropionate dioxygenase and related
ring-hydroxylating dioxygenases, large terminal subunit
[Inorganic ion transport and metabolism / General function
prediction only]; Region: HcaE; COG4638"
/db_xref="CDD:34257"
misc_feature complement(19073..19639)
/locus_tag="CNE_1c00160"
/note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
ligand-binding domain superfamily; Region: SRPBCC;
cl14643"
/db_xref="CDD:209878"
misc_feature complement(order(19169..19171,19178..19186,19193..19195,
19199..19201,19211..19216,19250..19252,19256..19258,
19262..19264,19268..19270,19286..19288,19289..19291,
19295..19300,19352..19354,19358..19360,19364..19366,
19370..19372,19376..19378,19433..19435,19439..19441,
19445..19447,19451..19453,19478..19480,19559..19564,
19568..19576,19616..19618,19622..19624,19628..19630))
/locus_tag="CNE_1c00160"
/note="hydrophobic ligand binding site; other site"
/db_xref="CDD:176854"
gene complement(19936..20817)
/locus_tag="CNE_1c00170"
/db_xref="GeneID:10916408"
CDS complement(19936..20817)
/locus_tag="CNE_1c00170"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683868.1"
/db_xref="GI:339324175"
/db_xref="GeneID:10916408"
/translation="MNRPTLDNIDPALRDDWFVVSAASRVTAAASKTMLLGQPIAIWR
EHGQPVAASDIAPHARYRAMDCYGFTWVSLGAPQQALFAWPEYGEAQRRHVDCGAIGV
KTSGLRMIENFLDMGHFPYVHTGILGQEPHTEVKEYRVAVDDANELWATECRFWQPRA
AATAAAGIDVDYVYRVVQPYAALLYKTSPACAPARDVIALFVQPLTECESRAHLMMLL
FDETHGDSELIDFQQTIFGQDKPILESQLPARLPLDPRVETSARADASSSAYRRWLRA
RNVRYGTCETRADAPGR"
misc_feature complement(19972..>20643)
/locus_tag="CNE_1c00170"
/note="Phenylpropionate dioxygenase and related
ring-hydroxylating dioxygenases, large terminal subunit
[Inorganic ion transport and metabolism / General function
prediction only]; Region: HcaE; COG4638"
/db_xref="CDD:34257"
misc_feature complement(20080..20541)
/locus_tag="CNE_1c00170"
/note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
ligand-binding domain superfamily; Region: SRPBCC;
cl14643"
/db_xref="CDD:209878"
misc_feature complement(order(20089..20091,20098..20106,20113..20115,
20116..20121,20170..20172,20176..20178,20182..20184,
20188..20190,20206..20208,20272..20274,20278..20280,
20284..20286,20290..20292,20296..20298,20353..20355,
20359..20361,20365..20367,20371..20373,20395..20397,
20476..20481,20485..20493,20533..20535,20539..20541))
/locus_tag="CNE_1c00170"
/note="hydrophobic ligand binding site; other site"
/db_xref="CDD:176854"
gene complement(20814..21527)
/locus_tag="CNE_1c00180"
/db_xref="GeneID:10916409"
CDS complement(20814..21527)
/locus_tag="CNE_1c00180"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683869.1"
/db_xref="GI:339324176"
/db_xref="GeneID:10916409"
/translation="MHTTVGSDFEASAHWFPVAVSGDIRQGEITQAFLDGQELALWRS
ADGTVHAWENRCPHRGTRFTLGRIIDDTLSCAYHGWRFEASGQCTLIPANPTLTPPRN
ACAKVFGTHEAGGFVWATLGTAPWSPAVPAAAATATAHCRAFVVEAAAQTVRERLLEH
PAYGYRGIGASVVGATDADGHATLAYLTPMSPERTLVHLVLSGPGAAAPGVAERLRAA
RSFKPRRAYVEAAGLENRP"
misc_feature complement(<21162..21488)
/locus_tag="CNE_1c00180"
/note="Phenylpropionate dioxygenase and related
ring-hydroxylating dioxygenases, large terminal subunit
[Inorganic ion transport and metabolism / General function
prediction only]; Region: HcaE; COG4638"
/db_xref="CDD:34257"
misc_feature complement(21162..21485)
/locus_tag="CNE_1c00180"
/note="Rieske non-heme iron oxygenase (RO) family,
N-terminal Rieske domain of the oxygenase alpha subunit;
The RO family comprise a large class of aromatic
ring-hydroxylating dioxygenases found predominantly in
microorganisms. These enzymes enable...; Region:
Rieske_RO_Alpha_N; cd03469"
/db_xref="CDD:58539"
misc_feature complement(order(21288..21290,21294..21296,21303..21305,
21351..21356,21360..21362))
/locus_tag="CNE_1c00180"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:58539"
gene complement(21852..22964)
/gene="flhA"
/locus_tag="CNE_1c00190"
/db_xref="GeneID:10916410"
CDS complement(21852..22964)
/gene="flhA"
/locus_tag="CNE_1c00190"
/EC_number="1.1.1.284"
/codon_start=1
/transl_table=11
/product="S-(hydroxymethyl)glutathione dehydrogenase FlhA"
/protein_id="YP_004683870.1"
/db_xref="GI:339324177"
/db_xref="GeneID:10916410"
/translation="MKVKAAVAWEAGKPLTIEEVDLDGPRAGEVLIEVKATGICHTDY
YTLSGADPEGIFPAILGHEGAGIVVDTGPGVNSLREGDHVIPLYTPECRQCKFCLSRK
TNLCQAIRGTQGKGLMPDATSRFSLDGKPIFHYMGTSTFANYIVVPEIAVAKIREDAP
FDKVCYIGCGVTTGVGAVVYSAKVEAGASVVVFGLGGIGLNVIQAAKMVGADKIIGVD
INPARVPLASKFGMTHFVNPLDDQVGNVVDHIVQLTDGGADYSFECIGNTLTMRQALE
CTHKGWGQSFVIGVAAAGQEISTRPFQLVTGREWKGSGFGGARGRTDVPKIVDWYMEG
KLNIDDLITHTLRLDQINEGFDLMKRGESIRSVILY"
misc_feature complement(21861..22964)
/gene="flhA"
/locus_tag="CNE_1c00190"
/note="class III alcohol dehydrogenases; Region:
alcohol_DH_class_III; cd08300"
/db_xref="CDD:176260"
misc_feature complement(21855..22961)
/gene="flhA"
/locus_tag="CNE_1c00190"
/note="S-(hydroxymethyl)glutathione dehydrogenase/class
III alcohol dehydrogenase; Region: adh_III_F_hyde;
TIGR02818"
/db_xref="CDD:131865"
misc_feature complement(order(22023..22025,22095..22097,22458..22460,
22698..22703,22779..22781,22806..22814,22839..22841,
22845..22847))
/gene="flhA"
/locus_tag="CNE_1c00190"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:176260"
misc_feature complement(order(22458..22460,22776..22781,22845..22847))
/gene="flhA"
/locus_tag="CNE_1c00190"
/note="catalytic Zn binding site [ion binding]; other
site"
/db_xref="CDD:176260"
misc_feature complement(order(21870..21872,22020..22028,22098..22103,
22155..22160,22170..22175,22296..22298,22308..22313,
22371..22385,22446..22448,22458..22460,22839..22844))
/gene="flhA"
/locus_tag="CNE_1c00190"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:176260"
misc_feature complement(order(22647..22649,22671..22673,22680..22682,
22689..22691))
/gene="flhA"
/locus_tag="CNE_1c00190"
/note="structural Zn binding site [ion binding]; other
site"
/db_xref="CDD:176260"
misc_feature complement(order(22023..22040,22047..22055,22062..22085,
22092..22094,22119..22130,22149..22154,22185..22187,
22200..22202,22644..22646,22650..22652,22656..22661,
22665..22667,22674..22679))
/gene="flhA"
/locus_tag="CNE_1c00190"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176260"
gene 23217..24133
/locus_tag="CNE_1c00200"
/note="response regulator receiver modulated diguanylate
cyclase"
/pseudo
/db_xref="GeneID:10916411"
gene complement(24173..25435)
/locus_tag="CNE_1c00210"
/db_xref="GeneID:10916412"
CDS complement(24173..25435)
/locus_tag="CNE_1c00210"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683871.1"
/db_xref="GI:339324178"
/db_xref="GeneID:10916412"
/translation="MPPTPPIREALQAIACRRRALHNDQKYQKFLIAVIGRDVAVAGE
KLRIPNVTQATIRSALDEFDRVLRGTQKWEDWEIKKSQLYAISDQGKLYPPKQILSMA
TGVPVSRFSGGEQTNAYLENLGFSIVRLPGGSPPFAGFEPPKFALGRVYHRQTEIHDR
FGGSRQSGIAPSSKVPAVFIFTGESGEQYGYFDGRDELGMFSYTGEGQVGDMEFKRGN
LAIREHAANGQALHLFKALGKGKGQEYLGEHAYGGHSIRRGPDRKGAQRNIIVFQLVP
VALLDEESNTLPEDEATDDPAPTSLEEARKRAIEAIHNSSDEMGKAALRKLYRRSKRV
KDYVLLRAEGICESCQQPAPFKRKDGSAYLEPHHTTRVSDGGLDHPRYVAAICPACHR
HIHHGIGGDEKNFELILAIAAKEPDACP"
misc_feature complement(24380..>24604)
/locus_tag="CNE_1c00210"
/note="Ferredoxin reductase (FNR), an FAD and NAD(P)
binding protein, was intially identified as a chloroplast
reductase activity, catalyzing the electron transfer from
reduced iron-sulfur protein ferredoxin to NADP+ as the
final step in the electron transport...; Region: FNR_like;
cl06868"
/db_xref="CDD:208564"
misc_feature complement(24251..24424)
/locus_tag="CNE_1c00210"
/note="HNH nucleases; HNH endonuclease signature which is
found in viral, prokaryotic, and eukaryotic proteins. The
alignment includes members of the large group of homing
endonucleases, yeast intron 1 protein, MutS, as well as
bacterial colicins, pyocins, and...; Region: HNHc;
cd00085"
/db_xref="CDD:28969"
misc_feature complement(order(24251..24253,24263..24265,24272..24277,
24287..24292,24323..24325,24329..24337,24341..24343))
/locus_tag="CNE_1c00210"
/note="active site"
/db_xref="CDD:28969"
gene 25979..26308
/locus_tag="CNE_1c00220"
/db_xref="GeneID:10916413"
CDS 25979..26308
/locus_tag="CNE_1c00220"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683872.1"
/db_xref="GI:339324179"
/db_xref="GeneID:10916413"
/translation="MTSTTPAPQEPTLAQKQAQLAENLAKIDRAQARRHAKAAPPPPS
KAVTLEDHILEATDDILRVSAGLQSFLTLLELQSDTIPQGIGLHALLLPLKQQLVDTA
DRLQALV"
misc_feature 25985..26305
/locus_tag="CNE_1c00220"
/note="Protein of unknown function (DUF1484); Region:
DUF1484; pfam07363"
/db_xref="CDD:148780"
gene complement(26411..29053)
/locus_tag="CNE_1c00230"
/db_xref="GeneID:10916414"
CDS complement(26411..29053)
/locus_tag="CNE_1c00230"
/codon_start=1
/transl_table=11
/product="diguanylate cyclase/phosphodiesterase"
/protein_id="YP_004683873.1"
/db_xref="GI:339324180"
/db_xref="GeneID:10916414"
/translation="MPERSTTRYGKALQRLHQVFSPLNLAAAAWLIATWAFAAFQLVS
ERDRLLHDAAERTQAQAQAFGAYSRSSILRLSEFLLDLRASWLVGQPGFIDMVREREN
LVVDLSFQVSVIDKHGLLIYSSIAPPAPGQKVDLSGREHFRVHQNAGGRDMLFISDPV
KGKVSRKWSIQFTRPILRAGSFDGVIVVSVSPEQFASFAQSFTNRDGEVASVIKTSGQ
VLARVPAMEGTLARAVSNRPYLASGSPQSGSYRAVSGSEGVERVFGYYRLPEFGLNFV
VGESVGLVLAPYEVYRRVALAGAIASTLLLGLLYYSLRRSMGERQRHMEEMRLASLVY
SSSSEAMVVTSLDGTIIDVNPAFAAATGYTAKEVKGRPGYIVSGAGNVAGLVERLRAT
VAAKGRWSGEFSIRRKDGSEFPAYLTVDTYLAHAYGERRRVALIHDMTEKRQAEEVIR
HQANFDALTDLPNRRLFFDRLRQEIERSRGTQDVLALLFIDLDRFKEVNDTLGHDQGD
LLLLEAARRIAASVRASDTVARLAGDEFTVILSAVGDAGVAGGIAEAILERIAAPYHL
AGELVVVSASIGVATYPKDADNAEDLLVCADQAMFAAKEEGRNRWKVFTQALLHAERE
RLRITQDLRTALASGQFALHYQPIVNLRTGKVCKAEALIRWDHPARGPIHPADFIAVA
EESGLIIDIGRWVLTEALDQLARWQVLLGNGFQISVNKSPVEFSAPASGPESWSSMIE
RRNVPVGSLVIEITEGSLMEQNADVMDQLSRFQAAGIEIALDDFGTGYSSLSYLRRLD
IDYIKIDQSFVRSLTRGPDDVALCRAIISMAHALRIRVIAEGVETESQRDILVAAGCD
YGQGHYFCPPVEASAFEAYVSAVT"
misc_feature complement(27737..28045)
/locus_tag="CNE_1c00230"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(27731..28033)
/locus_tag="CNE_1c00230"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature complement(order(27824..27826,27839..27841,27917..27928,
27965..27967,27983..27985,27995..27997))
/locus_tag="CNE_1c00230"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(27797..27799,27803..27805,27887..27892,
27899..27901,27923..27925,27935..27937))
/locus_tag="CNE_1c00230"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(27221..27694)
/locus_tag="CNE_1c00230"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(27452..27454,27581..27583))
/locus_tag="CNE_1c00230"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(27449..27460,27464..27466,27530..27532,
27542..27544,27554..27559,27566..27568))
/locus_tag="CNE_1c00230"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(27389..27391,27476..27478))
/locus_tag="CNE_1c00230"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature complement(26441..27166)
/locus_tag="CNE_1c00230"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene 29232..29597
/locus_tag="CNE_1c00240"
/db_xref="GeneID:10916415"
CDS 29232..29597
/locus_tag="CNE_1c00240"
/codon_start=1
/transl_table=11
/product="zinc finger SWIM domain containing protein"
/protein_id="YP_004683874.1"
/db_xref="GI:339324181"
/db_xref="GeneID:10916415"
/translation="MCHSGLIDAPQKGAKAFSPQTFRRRCRSQGAYGDSLMSLADVLR
QRLAGPHAAQVVELSELAIAGAEKSLEQIDDSGGGVMPAILALASVHLDACKQTGPDP
MKLAEQLFRLQAEGGWDTF"
gene complement(29883..30728)
/locus_tag="CNE_1c00250"
/db_xref="GeneID:10916416"
CDS complement(29883..30728)
/locus_tag="CNE_1c00250"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683875.1"
/db_xref="GI:339324182"
/db_xref="GeneID:10916416"
/translation="MHRFASRRSPNDSMTAMQEMNTSARWRRIALALFGAVLLADAIA
LMTIGLFNFGIVLPGCIGASFLLLAWQWPLVAHWRAASHRRQQLWQAAWIAFALWLAT
VAVFFYNIHHNTEVAIPGNSPVKAIIILGSGTPNCVASPTLVARLDQGLKHAQQWPQA
KVAVSGGQDFGLRCREADIMAEYLIARGVAADRVIREGRSTSTEENLMFSRHLLEEQG
VAATDPIVVVTSDFHVQRAVRIARKAGFVEVAGAGAGTPLYLRYNAWLREYFAAISGW
VLREY"
misc_feature complement(29916..30353)
/locus_tag="CNE_1c00250"
/note="YdcF-like. YdcF-like is a large family of mainly
bacterial proteins, with a few members found in fungi,
plants, and archaea. Escherichia coli YdcF has been shown
to bind S-adenosyl-L-methionine (AdoMet), but a
biochemical function has not been...; Region: YdcF-like;
cd06259"
/db_xref="CDD:99750"
misc_feature complement(order(29925..29927,30021..30023,30030..30032,
30042..30044,30111..30113,30120..30122))
/locus_tag="CNE_1c00250"
/note="putative active site [active]"
/db_xref="CDD:99750"
gene 30866..31153
/locus_tag="CNE_1c00260"
/db_xref="GeneID:10916417"
CDS 30866..31153
/locus_tag="CNE_1c00260"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683876.1"
/db_xref="GI:339324183"
/db_xref="GeneID:10916417"
/translation="MRGVGLETMMRHFIAIGVLFFTATSANACRPPYLEFSAVFEPGS
ATLSGAEVKRLADWRINSRRAFPAGYTVYMYLRQNEILGIPRQLAEARRVQ"
gene 31982..33769
/locus_tag="CNE_1c00270"
/db_xref="GeneID:10916418"
CDS 31982..33769
/locus_tag="CNE_1c00270"
/codon_start=1
/transl_table=11
/product="OmpA protein"
/protein_id="YP_004683877.1"
/db_xref="GI:339324184"
/db_xref="GeneID:10916418"
/translation="MHNENKTTVGASRRAIGKAARPAASGVWRWTSLAVACSMVTGCA
TAPGAYLKETFASDDPCSNNARNIGIAAGVIAGAVLGNVVSSNKKVGTLLGAGVGAAL
GGLIGADMDRRRCELSRIAKKHGLDVTVVDIAADGSALAPATRDREQGGLGMSVSVRD
AGTGGSSQFASGSSVLAPDARVAFTEIAQQYAYAAQARMLGPKSTTQERQAVEALKSR
RILLIGNTDDTGSSRLNAELSEQRARAVAALFRDAGVTESQLYYQGAGETMPLADNRD
ETGRAKNRRVEIVDVTDESAFAKYLAARRPNVAFYRESAADRTQSGRDSGEANGAAQK
KSATTARAGDRPKTQSPVRTASAASPRQGDARSDAVKVPAGDRPVTSASATASPAPAQ
KQGPVTQTRIVSAPSIDFGGTPSGRSVMVPDLGKLDRPTGFALISSAVADTPLARCDQ
DRPREARAVKSLSDDKAYRTADYMPGLYNTIWTDTVNGHLVALKGVAVLRDGGAPARS
PEVLVYRDYHDAGQVADLRTEAQVNTYRGDKGLLYRVFVNKAPLQCLDIVIPHATPDQ
ARGSWLRYDKDGNSYSAAFSPRMAGGGKI"
misc_feature <32381..32848
/locus_tag="CNE_1c00270"
/note="Outer membrane protein and related
peptidoglycan-associated (lipo)proteins [Cell envelope
biogenesis, outer membrane]; Region: OmpA; COG2885"
/db_xref="CDD:32711"
misc_feature 32483..32848
/locus_tag="CNE_1c00270"
/note="Peptidoglycan binding domains similar to the
C-terminal domain of outer-membrane protein OmpA; Region:
OmpA_C-like; cd07185"
/db_xref="CDD:143586"
misc_feature order(32492..32497,32657..32662,32669..32671,32681..32686,
32693..32695,32819..32821,32831..32833)
/locus_tag="CNE_1c00270"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:143586"
gene 33795..35300
/locus_tag="CNE_1c00280"
/db_xref="GeneID:10916419"
CDS 33795..35300
/locus_tag="CNE_1c00280"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683878.1"
/db_xref="GI:339324185"
/db_xref="GeneID:10916419"
/translation="MSHWINENLAALNSALALAVLLIVYLGNKFRIDFALMNLWYSLP
LIGKIARLSRDTTRFAKDKSWTLSERTLCDDYKQFIHFTTEDEFNKRLTYLSKAHDLG
RSPTPGWMMGLLCVLVLAEGLGFSYMLGTWMAGEGGSENARQLLMWAIVFVLCVIFVF
VMHSAGHQLYRSNLIAKADSEWRGEGQPGKFASHNIKLNDPQDKDDAEPEYKQSVNRV
GTSRSYFMVGVAVVIIVFVSIVSTVMRVKHLETERTAQTALVAEGPGAGNPFDKLGQA
LPAELAQEQQKADDQAKADGHAAYADEGLAAFLMLAFIFAITQLVGIAGGYKWGFAGK
ESKAAYRGTRGFSTYDDYLAFFTPLMQVAQSKLQTLQQKMSERRANDGLRLEHAFDDY
LMEARESRTRVAAARNVSQADIAPAVESLPATDTASVLARIDAMTAAGRKADAVALLQ
SLPDSVRNDVTAQLAERKAAQEAARLAAEQARKAEEEQDKEAERARLEALL"
gene 35302..36198
/locus_tag="CNE_1c00290"
/db_xref="GeneID:10916420"
CDS 35302..36198
/locus_tag="CNE_1c00290"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683879.1"
/db_xref="GI:339324186"
/db_xref="GeneID:10916420"
/translation="MASTPAGRPVSDWRAAGFGKRCAAWLAVATTMLCGPAFAAPEIP
SCYVANQLGSPTAAQRALFLMIDQTTALDDKLVSELGRHLQGLLRPGTTFRVYSFSAY
AQGRYLQQRAAGTLEAPLVDQSLRDATAVKTLKNFDACLKSQYAYGTKLVAESVREAL
QGSSEALARSDVLASIAAVSQAVRDTAAQQKTVLIVSDMLENSSISSFYSQERMRQID
AVQELRKVEKANVRADFGGASVYVMGAGIVPEPKGARSAAASYRSPQSIEALRTFWDG
FFERSNARLVGFGAPALLTPIR"
gene complement(36314..37621)
/gene="ttuB1"
/locus_tag="CNE_1c00300"
/db_xref="GeneID:10916421"
CDS complement(36314..37621)
/gene="ttuB1"
/locus_tag="CNE_1c00300"
/codon_start=1
/transl_table=11
/product="tartrate transporter TtuB"
/protein_id="YP_004683880.1"
/db_xref="GI:339324187"
/db_xref="GeneID:10916421"
/translation="MQTVPASGAPPLAAPTDRPLTALLFRKLMPLLVLSYVISFLDRT
NIALAKTHIAVDLNISAAAYGLGAGLFFLSYALLEIPSNLIMHRVGARFWITRIMVTW
GLLSAAMSFVQGETSFYIMRVLLGAAEAGLFPGVMLYLTYWFGREDRARAVGYFLLGV
CIANIVSGPLGGALLGMDGLWGFKGWQWMFVLEGLPAVFLAAVVWKKLPDGPDSAPWL
TPAQALEVRSRLAAEAADASAGKGGHSFLGAMRDPQVWLAIFIYFCHQISIYTVIFFL
PGIIGTYGKLTPVEIGLLNSLPWIAAAIGAAWLPRHANTPRRGRRLLCLGLVVMAGGL
LIAAFAGPVMALVGFSLTALMFFVVQSIVFLFPSSRLKGVALAGGLALINTCGLVGGF
IGPSVMGIIEQATGSTRNGLVIMAGLLLIACAAAPFLRQGQER"
misc_feature complement(36359..37552)
/gene="ttuB1"
/locus_tag="CNE_1c00300"
/note="4-hydroxyphenylacetate permease; Region: HpaX;
TIGR02332"
/db_xref="CDD:131385"
misc_feature complement(36332..37531)
/gene="ttuB1"
/locus_tag="CNE_1c00300"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(36449..36451,36458..36463,36470..36475,
36482..36487,36518..36520,36527..36532,36542..36544,
36551..36556,36563..36565,36704..36706,36716..36718,
36725..36727,36737..36739,36749..36751,36791..36793,
36800..36805,36812..36817,36824..36826,37130..37132,
37148..37153,37160..37165,37199..37201,37208..37213,
37220..37225,37232..37237,37373..37378,37382..37387,
37397..37399,37406..37411,37418..37420,37469..37474,
37478..37486,37493..37495))
/gene="ttuB1"
/locus_tag="CNE_1c00300"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(37745..38677)
/locus_tag="CNE_1c00310"
/db_xref="GeneID:10916422"
CDS complement(37745..38677)
/locus_tag="CNE_1c00310"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683881.1"
/db_xref="GI:339324188"
/db_xref="GeneID:10916422"
/translation="MAKRAKAIITCAPTGAIHTPSMSPHLPVTADEIATAAIDAARAG
AAILHLHARDPKDGRPSQDPELFRPFLARISAETDAVINITTGGSPHMTVEERMLPAT
TFKPELASLNMGSMNFGLFPMLDRFKEFQHHWEREHLENSRNLIFKNTYQDIENILRI
GNANGTRFEFECYDISHLYNLRHFLDRGLVSGPVFIQTVFGILGGIGPDPEDLMHMHR
TARRLFGDQFRWSILGAGRSQIPLATIGAAMGANVRVGLEDSLWIGPGQLAASSAEQV
TRIRTVLEALNIDVATPDEARDILDLKGAAGTAF"
misc_feature complement(37772..38662)
/locus_tag="CNE_1c00310"
/note="Prokaryotic protein of unknown function (DUF849);
Region: DUF849; pfam05853"
/db_xref="CDD:203337"
gene complement(38752..39534)
/gene="fabG1"
/locus_tag="CNE_1c00320"
/db_xref="GeneID:10916423"
CDS complement(38752..39534)
/gene="fabG1"
/locus_tag="CNE_1c00320"
/EC_number="1.1.1.53"
/codon_start=1
/transl_table=11
/product="3-oxoacyl-ACP reductase"
/protein_id="YP_004683882.1"
/db_xref="GI:339324189"
/db_xref="GeneID:10916423"
/translation="MWKDESLAGKRVLVTAGADGIGLEITRAFVEAGARAAVCDVAGD
SLERVCAELPGVVAVRADVSKEADVEALFQAVDCAFGGLDVLVNNAGVAGPTGGVESL
SLADWERTLAVNITGQFLCARAAVPRLRQGRSPSIVNLSSAAGHLGMPGRSAYSASKW
AVVGFTKSLALELGVDGIRVNTVLPGAVDGPRIRAVIAAKAEALGKPLEEVTRDYTSQ
AALHRMVTMRDIANMVRFLCSDQAANVHGQEMVVDGLTQALS"
misc_feature complement(38758..39519)
/gene="fabG1"
/locus_tag="CNE_1c00320"
/note="short chain dehydrogenase; Provisional; Region:
PRK12829"
/db_xref="CDD:183778"
misc_feature complement(38776..39501)
/gene="fabG1"
/locus_tag="CNE_1c00320"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature complement(order(38962..38967,38971..38982,39058..39060,
39070..39072,39109..39117,39196..39198,39262..39270,
39346..39354,39409..39417,39472..39483,39487..39489))
/gene="fabG1"
/locus_tag="CNE_1c00320"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature complement(order(39058..39060,39070..39072,39109..39111,
39193..39195))
/gene="fabG1"
/locus_tag="CNE_1c00320"
/note="active site"
/db_xref="CDD:212491"
gene 39631..40413
/gene="mcbR"
/locus_tag="CNE_1c00330"
/db_xref="GeneID:10916424"
CDS 39631..40413
/gene="mcbR"
/locus_tag="CNE_1c00330"
/codon_start=1
/transl_table=11
/product="HTH-typetranscriptional regulator McbR"
/protein_id="YP_004683883.1"
/db_xref="GI:339324190"
/db_xref="GeneID:10916424"
/translation="MLRGMTLNDLVTPLVRQTLSRDVYTQLRDLLISGQMMPGEQISL
RNIAAALNVSVMPVREAVHRLVAEQALELTPNRALRVPRMSVSQFEEITKIRIQLEGL
ATATAAERITDEELKQVQALHRRFADEMSKRSPDGADVIAANQAFHFAVYAAARMPIL
LQMIESQWLRIGPILNHDLRSGSRRVEERVAVKHHDNLIEALRRHDSAAACAALRGDI
ESAAAYIVSAGVLVNTDRTEDAAVTLVPVKRAAKAGRAGVKG"
misc_feature 39664..40314
/gene="mcbR"
/locus_tag="CNE_1c00330"
/note="Transcriptional regulators [Transcription]; Region:
GntR; COG1802"
/db_xref="CDD:31987"
misc_feature 39682..39873
/gene="mcbR"
/locus_tag="CNE_1c00330"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(39682..39684,39688..39690,39760..39765,39787..39801,
39805..39810,39817..39819,39847..39852,39856..39867)
/gene="mcbR"
/locus_tag="CNE_1c00330"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 39901..40290
/gene="mcbR"
/locus_tag="CNE_1c00330"
/note="This entry represents the C-terminal ligand binding
domain of many members of the GntR family; Region: FCD;
smart00895"
/db_xref="CDD:197963"
gene 40428..40541
/locus_tag="CNE_1c00340"
/db_xref="GeneID:10916425"
CDS 40428..40541
/locus_tag="CNE_1c00340"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683884.1"
/db_xref="GI:339324191"
/db_xref="GeneID:10916425"
/translation="MKKVTAFNEWADIDADIKRAIRLTGMGGPVSFYVQGR"
gene complement(40642..40866)
/locus_tag="CNE_1c00350"
/db_xref="GeneID:10916426"
CDS complement(40642..40866)
/locus_tag="CNE_1c00350"
/codon_start=1
/transl_table=11
/product="lambda repressor-like DNA-binding domain
containing protein"
/protein_id="YP_004683885.1"
/db_xref="GI:339324192"
/db_xref="GeneID:10916426"
/translation="MLFAANMRRIRKDKGFTQEKVAEAADLHVNYISSVERGERNISI
CNIEKIAVALGVAMTALVDEAGPSKGYQSS"
misc_feature complement(40684..40857)
/locus_tag="CNE_1c00350"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature complement(order(40756..40758,40831..40833,40843..40845))
/locus_tag="CNE_1c00350"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature complement(order(40759..40761,40834..40836))
/locus_tag="CNE_1c00350"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature complement(order(40753..40758,40768..40770,40777..40779,
40810..40815))
/locus_tag="CNE_1c00350"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene 41150..41500
/locus_tag="CNE_1c00360"
/db_xref="GeneID:10916427"
CDS 41150..41500
/locus_tag="CNE_1c00360"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683886.1"
/db_xref="GI:339324193"
/db_xref="GeneID:10916427"
/translation="MIQPLITAEQREQLLANGHAYATGKARDPLPVVRLFTPDAHATW
LLAALDPADGDTAYGLCDVGIGMPELGHVKLSDLASIVGPLKRPILRDRYFRPTRSLG
EYARLAQSSGSIVD"
misc_feature 41162..41497
/locus_tag="CNE_1c00360"
/note="Protein of unknown function (DUF2958); Region:
DUF2958; pfam11171"
/db_xref="CDD:151613"
gene 41671..43059
/gene="gabP"
/locus_tag="CNE_1c00370"
/db_xref="GeneID:10916428"
CDS 41671..43059
/gene="gabP"
/locus_tag="CNE_1c00370"
/codon_start=1
/transl_table=11
/product="GABA permease GabP"
/protein_id="YP_004683887.1"
/db_xref="GI:339324194"
/db_xref="GeneID:10916428"
/translation="MNPSGKGLSHGLKARHVTMVSIAGVIGAGLFVGSGRAIAEAGPA
ALLAYAMSGLLVVLVMRMLGEMAVAQPDTGSFSTYADGAIGHWAGFTIGWLYWWFWVL
VIPIEATAAAAILSAWLPAVPQWTFALAITLALTGTNLFSVRNYGEFEFWFALIKVVA
IVAFIAVGGLAVLGLLPGAQVSGVARLVDYGGFMPNDAHAVIAVVLTTMFAFMGAEIV
TIAAAEAEHPARQIVRATRSVVWRISLFYLGSIFIVVALVPWNDPLLVTHGAYQRALE
ILGVPHAKAIVDVIVLTAVMSCLNSALYTASRMLFSLSTRGDAPSGLSRTAACGTPRA
AVLVSTAFAFVCVLANYLMPERVFAFLLATSGAVALLVYLVIAVSQLRMRAVLERRAA
ELPLRMWGYPWLTWSVIVVILGVLAAMVWHPAHRMEILATATLLAGVLAGAWLNSRNR
SADGQALAMDDL"
misc_feature 41680..42957
/gene="gabP"
/locus_tag="CNE_1c00370"
/note="gamma-aminobutyrate permease; Region: GABAperm;
TIGR01773"
/db_xref="CDD:162526"
gene 43227..44615
/gene="proP1"
/locus_tag="CNE_1c00380"
/db_xref="GeneID:10916429"
CDS 43227..44615
/gene="proP1"
/locus_tag="CNE_1c00380"
/codon_start=1
/transl_table=11
/product="proline/betaine transporter ProP"
/protein_id="YP_004683888.1"
/db_xref="GI:339324195"
/db_xref="GeneID:10916429"
/translation="MQRDLNMNPQQEPHVNPLSVPGGVLPAPARTLAARDYKTLGLAA
LGGTLEFYDFVIYVFFVTVLGALFFPPNMPDWLRQLQAFGIFAAGYLARPLGGIVIAH
FGDRLGRKRMFTLSILLMAAPTLMIGLLPTYASIGVAAPLLLLAMRVLQGAAIGGEMP
GAWVFVGEHVPSRHYGLGIGTLTSGITGGILLGSLVAVAINRHYTPEQVSDFAWRIPF
LLGGVFGLVSVYLRRFLHETPVFRELADRSNLARELPIRTVLREHRSASLFVALLTWV
LSTSIVVVVLYTPAYLQKIHHIPAALALETNAFATLTLTIGCVIVGWACDRIGTRAVM
LIGWGGLLMTAYLFYGSLPGTPGTLFWHYGLLGLFVGTIATVPIAGVRAFPAPVRFTG
LSFAYNMSYAVFGGLTPMILTLWLQHDTMAPAHYVAVLAAVGSLLAFWPLARRGHAMR
NGVASTAGHVSR"
misc_feature 43374..44504
/gene="proP1"
/locus_tag="CNE_1c00380"
/note="metabolite-proton symporter; Region: 2A0106;
TIGR00883"
/db_xref="CDD:188094"
misc_feature 43398..44480
/gene="proP1"
/locus_tag="CNE_1c00380"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature order(43422..43424,43431..43439,43443..43448,43482..43484,
43491..43496,43503..43505,43515..43520,43524..43529,
43689..43694,43701..43706,43713..43718,43725..43727,
43761..43766,43773..43778,43794..43796,44058..44060,
44067..44072,44079..44084,44091..44093,44133..44135,
44145..44147,44157..44159,44166..44168,44178..44180,
44325..44327,44334..44339,44346..44348,44358..44363,
44370..44372,44403..44408,44415..44420,44427..44432,
44439..44441)
/gene="proP1"
/locus_tag="CNE_1c00380"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 44631..45323
/locus_tag="CNE_1c00390"
/db_xref="GeneID:10916430"
CDS 44631..45323
/locus_tag="CNE_1c00390"
/codon_start=1
/transl_table=11
/product="XRE family transcriptional regulator"
/protein_id="YP_004683889.1"
/db_xref="GI:339324196"
/db_xref="GeneID:10916430"
/translation="MNTTENTPPVRLLTPAELAVCIKVFRDARQWTQEQLAVIAGLNV
RTVQRVEQGWPADADTCRALASAFDFLDIDALNKPFAIPPEDELKAAQEQFDLEHVTF
AAIPLTTGKQLAELAQTSTMDMSELAFEMGGEADKRFAALMEYFRNYRDALDAYTEAE
KREAADTMQANIDVLKTLGVSLCYAERQVLLKGSSDPDRPMPANVLYVIGFPLGKEPK
LFATPTSVDIRL"
misc_feature 44694..45011
/locus_tag="CNE_1c00390"
/note="Predicted transcriptional regulators
[Transcription]; Region: HipB; COG1396"
/db_xref="CDD:31586"
misc_feature 44694..44858
/locus_tag="CNE_1c00390"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature order(44697..44699,44709..44711,44784..44786)
/locus_tag="CNE_1c00390"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(44706..44708,44781..44783)
/locus_tag="CNE_1c00390"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(44727..44732,44763..44765,44772..44774,44784..44789)
/locus_tag="CNE_1c00390"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene complement(45325..45540)
/gene="hss"
/locus_tag="CNE_1c00400"
/db_xref="GeneID:10916431"
CDS complement(45325..45540)
/gene="hss"
/locus_tag="CNE_1c00400"
/EC_number="2.5.1.44"
/codon_start=1
/transl_table=11
/product="homospermidine synthase Hss"
/protein_id="YP_004683890.1"
/db_xref="GI:339324197"
/db_xref="GeneID:10916431"
/translation="MIEQIVIVGLGCIGQAVLPLLERTWPRPAIAVVDRMLDGGRWKL
AARHKLDAIESTITVDKTPGFMQQRPL"
misc_feature complement(<45361..45528)
/gene="hss"
/locus_tag="CNE_1c00400"
/note="Saccharopine dehydrogenase; Region: Saccharop_dh;
pfam03435"
/db_xref="CDD:202629"
gene complement(45726..46670)
/gene="speB"
/locus_tag="CNE_1c00410"
/db_xref="GeneID:10916432"
CDS complement(45726..46670)
/gene="speB"
/locus_tag="CNE_1c00410"
/EC_number="3.5.3.11"
/codon_start=1
/transl_table=11
/product="agmatinase SpeB"
/protein_id="YP_004683891.1"
/db_xref="GI:339324198"
/db_xref="GeneID:10916432"
/translation="MAGTQNLWQGRVDDGERGDTTRLFRIVQTLETADVTRLGGATVL
LGFRCDAGVLRNQGRPGAAHGPDAIRQALANVPAHGLPALYDAGNVSCDDGDLESAQL
ALAGTVRDVLARGGLPLVLGGGHEVAWGTWQGLRAHLDVQDDGGRVLIINIDAHFDLR
TSRPASSGTPFDQIANACAERGQPFDYVCLGVSRLSNTPALFGRADALGVCYVEDVDM
QERHLASRLAELAARIDATDHVYLTIDLDALPAAVMPGVSAPAAYGVPLPVVEEVAML
ARRSGKLRVADLAEYNPQYDRDHQGARVAARLAWRLLG"
misc_feature complement(45771..46544)
/gene="speB"
/locus_tag="CNE_1c00410"
/note="Formimidoylglutamase or HutE; Region:
Formimidoylglutamase; cd09988"
/db_xref="CDD:212514"
misc_feature complement(order(45801..45803,45930..45932,45936..45938,
46167..46172,46197..46205,46209..46211,46296..46298))
/gene="speB"
/locus_tag="CNE_1c00410"
/note="putative active site [active]"
/db_xref="CDD:212514"
misc_feature complement(order(45930..45932,45936..45938,46197..46199,
46203..46205,46209..46211,46296..46298))
/gene="speB"
/locus_tag="CNE_1c00410"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:212514"
gene complement(46673..47434)
/gene="hisP"
/locus_tag="CNE_1c00420"
/db_xref="GeneID:10916433"
CDS complement(46673..47434)
/gene="hisP"
/locus_tag="CNE_1c00420"
/EC_number="3.6.3.21"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_004683892.1"
/db_xref="GI:339324199"
/db_xref="GeneID:10916433"
/translation="MSDSAIIRIRNLGKSFGGHTVLRGIDFDVEPSQVVVVIGPSGSG
KSTFLRCCNGLEQPEAGTIDIVGKRLVTDGQLIGEHELNQLRTEVGMVFQSFNLFPHL
SVLHNVTVGPRMLRGASREEAERKAMGLLEKVGLAHKAHAMPASLSGGQKQRVAIARA
LAMEPRVMLFDEPTSALDPELVGEVLQVMKVLAAEGMTMVVVTHEMGFAREVADVVVV
MDGGGIIEAGPPSVIFSAPTQERTRGFLQAVLTRA"
misc_feature complement(46685..47422)
/gene="hisP"
/locus_tag="CNE_1c00420"
/note="ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism]; Region:
GlnQ; COG1126"
/db_xref="CDD:31323"
misc_feature complement(46802..47416)
/gene="hisP"
/locus_tag="CNE_1c00420"
/note="HisP and GlnQ are the ATP-binding components of the
bacterial periplasmic histidine and glutamine permeases,
repectively. Histidine permease is a multisubunit complex
containing the HisQ and HisM integral membrane subunits
and two copies of HisP. HisP...; Region:
ABC_HisP_GlnQ_permeases; cd03262"
/db_xref="CDD:73021"
misc_feature complement(47297..47320)
/gene="hisP"
/locus_tag="CNE_1c00420"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73021"
misc_feature complement(order(46823..46825,46919..46924,47153..47155,
47294..47302,47306..47311))
/gene="hisP"
/locus_tag="CNE_1c00420"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73021"
misc_feature complement(47153..47164)
/gene="hisP"
/locus_tag="CNE_1c00420"
/note="Q-loop/lid; other site"
/db_xref="CDD:73021"
misc_feature complement(46967..46996)
/gene="hisP"
/locus_tag="CNE_1c00420"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73021"
misc_feature complement(46919..46936)
/gene="hisP"
/locus_tag="CNE_1c00420"
/note="Walker B; other site"
/db_xref="CDD:73021"
misc_feature complement(46901..46912)
/gene="hisP"
/locus_tag="CNE_1c00420"
/note="D-loop; other site"
/db_xref="CDD:73021"
misc_feature complement(46817..46837)
/gene="hisP"
/locus_tag="CNE_1c00420"
/note="H-loop/switch region; other site"
/db_xref="CDD:73021"
gene complement(47431..48099)
/gene="hisM"
/locus_tag="CNE_1c00430"
/db_xref="GeneID:10916434"
CDS complement(47431..48099)
/gene="hisM"
/locus_tag="CNE_1c00430"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_004683893.1"
/db_xref="GI:339324200"
/db_xref="GeneID:10916434"
/translation="MELDFSPVFAGWHDILHGAVITVEVTACALVLGCVMGLLVGIGR
LDPNRRVIYSICTAYVTFIRGTPLLVQLFLLFFGLPQFNILLPAFVCGVIGLGIYSGA
YVSEIVRGAIQSVDKGQMEAARSIGMSSGQAMRAVILPQAIVRMIPPLGNEFIALIKN
SALVSLLTIADLMHEGQKIISVSYRSLEVYLAIALVYLILTSAAGLILRRAEQRLRMG
GMVQ"
misc_feature complement(47446..48081)
/gene="hisM"
/locus_tag="CNE_1c00430"
/note="ABC-type arginine transport system, permease
component [Amino acid transport and metabolism]; Region:
ArtQ; COG4215"
/db_xref="CDD:33942"
misc_feature complement(47770..48057)
/gene="hisM"
/locus_tag="CNE_1c00430"
/note="amine acid ABC transporter, permease protein, 3-TM
region, His/Glu/Gln/Arg/opine family; Region:
HEQRo_perm_3TM; TIGR01726"
/db_xref="CDD:130787"
misc_feature complement(47482..>47853)
/gene="hisM"
/locus_tag="CNE_1c00430"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(47530..47532,47560..47562,47569..47571,
47605..47607,47821..47823))
/gene="hisM"
/locus_tag="CNE_1c00430"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(47482..47487,47494..47499,47506..47511,
47515..47520,47527..47532,47560..47565,47602..47607,
47614..47625,47644..47646,47653..47658,47698..47700,
47749..47751,47758..47763,47773..47775,47779..47784,
47791..47793,47797..47799,47803..47808))
/gene="hisM"
/locus_tag="CNE_1c00430"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(47677..47679,47689..47694,47710..47748))
/gene="hisM"
/locus_tag="CNE_1c00430"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(48118..48873)
/gene="hisJ"
/locus_tag="CNE_1c00440"
/db_xref="GeneID:10916435"
CDS complement(48118..48873)
/gene="hisJ"
/locus_tag="CNE_1c00440"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_004683894.1"
/db_xref="GI:339324201"
/db_xref="GeneID:10916435"
/translation="MNLRRKCLMAGLATLTALTLGTAAHAQDNAVLRVATDATFPPME
FIENGKRTGFDVELVEAMAKTMGKRVEWTDIDFKGLIPGLVSRRFDMAVSGIYITPER
SKVVDFTEPYYTGGLVALVKSGNTTVHAPADLNGKKVSVQVGTKSVSFLRDTYPQVQR
VEVEKNQEMFNLVEIGRADAAVTGKPAAMQYVKTRGGLRMVEQPLTTEEYGMAVRKDT
PELTRALNAALAKVKADGTYAKLTQKWFGTAAK"
misc_feature complement(48130..48780)
/gene="hisJ"
/locus_tag="CNE_1c00440"
/note="Bacterial extracellular solute-binding proteins,
family 3; Region: SBP_bac_3; pfam00497"
/db_xref="CDD:201266"
misc_feature complement(48136..48780)
/gene="hisJ"
/locus_tag="CNE_1c00440"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature complement(order(48322..48324,48436..48438,48568..48570,
48643..48645,48754..48756))
/gene="hisJ"
/locus_tag="CNE_1c00440"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature complement(order(48343..48345,48361..48363,48373..48375))
/gene="hisJ"
/locus_tag="CNE_1c00440"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature complement(order(48241..48249,48250..48252))
/gene="hisJ"
/locus_tag="CNE_1c00440"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene complement(48954..49748)
/locus_tag="CNE_1c00450"
/db_xref="GeneID:10916436"
CDS complement(48954..49748)
/locus_tag="CNE_1c00450"
/codon_start=1
/transl_table=11
/product="IclR family transcriptional regulator"
/protein_id="YP_004683895.1"
/db_xref="GI:339324202"
/db_xref="GeneID:10916436"
/translation="MLNAVDNPTAVKPATPTPAKPGQPAGGADRVLFVLAALAQHGAP
ITVRELVAKTSLPKSTLYRQLMMLKRWGFVLESDGEYAPGPISLQLALGFDMASHLAR
EALPDMQLLAQQSDESVGLVVAVKDHAVCLEMVESRQSLRCSFEKGRGVPLRAGASAK
SLLAFMRDEARERLVRAQCEPGEAERLLAELTAIRETGYAVSEGEVDPGVWGVSAPLF
SRRSKADALGSITLMVPATRRQGRETALIDMTVAAAMRISARLQSY"
misc_feature complement(48963..49664)
/locus_tag="CNE_1c00450"
/note="Transcriptional regulator [Transcription]; Region:
IclR; COG1414"
/db_xref="CDD:31604"
misc_feature complement(49527..49664)
/locus_tag="CNE_1c00450"
/note="IclR helix-turn-helix domain; Region: HTH_IclR;
pfam09339"
/db_xref="CDD:150115"
misc_feature complement(48957..49307)
/locus_tag="CNE_1c00450"
/note="Bacterial transcriptional regulator; Region: IclR;
pfam01614"
/db_xref="CDD:201890"
gene complement(49883..50542)
/locus_tag="CNE_1c00460"
/db_xref="GeneID:10916437"
CDS complement(49883..50542)
/locus_tag="CNE_1c00460"
/EC_number="2.1.1.100"
/note="ICMTase"
/codon_start=1
/transl_table=11
/product="isoprenylcysteine carboxyl methyltransferase"
/protein_id="YP_004683896.1"
/db_xref="GI:339324203"
/db_xref="GeneID:10916437"
/translation="MRPTPGMAIATLAGTLAYLAIAIAGWGGIAPFFAHPARVALTLV
LFALSVAALFSGGNISSGMREDRGNRWVLAVFGVLGLLAAYLPPFTDRIGFWTLDGDT
MRWIGVALFAGGGVLRLWPVFVLGRRFSGLVAIQPGHTLVTTGIYSVIRHPSYLGFLV
SSLGWVLAFRSGVGVLLTLLMVPVLLARIRAEEALLRDQFGDEYASYCDRTWRMLPGI
Y"
misc_feature complement(49886..>50257)
/locus_tag="CNE_1c00460"
/note="Putative protein-S-isoprenylcysteine
methyltransferase [Posttranslational modification, protein
turnover, chaperones]; Region: STE14; COG2020"
/db_xref="CDD:32203"
gene 50688..51011
/gene="mazG"
/locus_tag="CNE_1c00470"
/db_xref="GeneID:10916438"
CDS 50688..51011
/gene="mazG"
/locus_tag="CNE_1c00470"
/codon_start=1
/transl_table=11
/product="ribonucleotide pyrophosphatase MazG"
/protein_id="YP_004683897.1"
/db_xref="GI:339324204"
/db_xref="GeneID:10916438"
/translation="MPLIDIKNLQQAAQDFGKARNWGKYHSPKNLAMALSVEVSELVE
IFQWQTDAESRAIMSTDERDHVEQELADITIYLAQLVTALGVDLDAAIRAKMEMNARK
YPLPE"
misc_feature 50715..50984
/gene="mazG"
/locus_tag="CNE_1c00470"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) MazG-like domain found in mouse RS21-C6 protein
and its homologs; Region: NTP-PPase_RS21-C6_like; cd11537"
/db_xref="CDD:212144"
misc_feature order(50721..50726,50733..50735,50742..50747,50751..50753,
50769..50774,50781..50786,50790..50795,50802..50804,
50811..50816,50823..50828,50883..50891,50895..50903,
50907..50912,50916..50918,50925..50930,50934..50939,
50943..50945,50949..50954,50958..50966,50970..50975,
50979..50984)
/gene="mazG"
/locus_tag="CNE_1c00470"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:212144"
misc_feature order(50724..50726,50799..50801,50808..50810,50892..50894,
50901..50903,50913..50915)
/gene="mazG"
/locus_tag="CNE_1c00470"
/note="chemical substrate binding site [chemical binding];
other site"
/db_xref="CDD:212144"
misc_feature order(50760..50762,50772..50777,50781..50789,50793..50798,
50805..50810,50814..50816,50823..50828,50913..50915)
/gene="mazG"
/locus_tag="CNE_1c00470"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:212144"
misc_feature order(50799..50801,50808..50810,50892..50894,50901..50903)
/gene="mazG"
/locus_tag="CNE_1c00470"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212144"
gene complement(51034..51891)
/locus_tag="CNE_1c00480"
/db_xref="GeneID:10916439"
CDS complement(51034..51891)
/locus_tag="CNE_1c00480"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683898.1"
/db_xref="GI:339324205"
/db_xref="GeneID:10916439"
/translation="MTRLSGRLAACIAFGLLLAASAQASDIACKTTLRPSRCNDPLAA
GTSCLQSVPHAADLICDHAMLQREHERIHADQQRLLRAGAIHGRDIAAWRERRDACTS
VTCLDRVFASWRRHPGKKPPPQAAAPQPTPPAARAREVSRNKQAAVTVDASRPAVAPP
QATQSAAEQLPAPPSAEPLAEPGIQAPPVLIQRASGPTPQQASIRPTLAPQPRGWTSL
GTLAWLGMCSAGVACWSRRTRGEWLPGVTRLRERTRDAPPIVLVVSGLLALNGVLLLC
VLAGSRPLS"
gene complement(52117..52620)
/locus_tag="CNE_1c00490"
/db_xref="GeneID:10916440"
CDS complement(52117..52620)
/locus_tag="CNE_1c00490"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683899.1"
/db_xref="GI:339324206"
/db_xref="GeneID:10916440"
/translation="MPDTAMALLFNAIVIGTGATLVMDAWVILRKRLLGVPALDYGLV
GRWLAWLPRGRLCHHPIAASPPVHRERGIGWIAHYLTGIVFAAILLGLWGLDWARHPT
LAPALIVGIGSVAAPFLLMQPAMGAGIAASRTPRPNVARAHSLVTHAVFGLGLYAAGW
VVSLVAT"
misc_feature complement(52135..52584)
/locus_tag="CNE_1c00490"
/note="Protein of unknown function (DUF2938); Region:
DUF2938; pfam11158"
/db_xref="CDD:151600"
gene complement(52613..53503)
/gene="phcB1"
/locus_tag="CNE_1c00500"
/db_xref="GeneID:10916441"
CDS complement(52613..53503)
/gene="phcB1"
/locus_tag="CNE_1c00500"
/codon_start=1
/transl_table=11
/product="S-adenosyl-L-methionine (SAM)-dependent
methyltransferase PhcB"
/protein_id="YP_004683900.1"
/db_xref="GI:339324207"
/db_xref="GeneID:10916441"
/translation="MGEQQQTSSNGGDQPALWNGPSGHAWVAEQAVLDDMFRPLEGLL
VDAVGKTSAQHVLDVGCGTGSTTIALARKLGTQGRCTGIDISEPMLAAARARAQHDGS
TASFIRADAQDYAFAPASFDSIVSRLGVMFFSDPVRAFANLRQAATPDATLHCIAWRS
AAENPFMTTAERAAAPLLSNLPPRQPGAPGQFAFGDRQRVQAILEEGGWTGIDVQPVD
LACTLPEPALVDYLSRLGPVGLALREADASTRASVIETVRAAFETYVHGATVRYTAAC
WMITARASASSQRAGETAHA"
misc_feature complement(53012..53356)
/gene="phcB1"
/locus_tag="CNE_1c00500"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature complement(53027..53338)
/gene="phcB1"
/locus_tag="CNE_1c00500"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(53123..53125,53171..53179,53249..53254,
53309..53329))
/gene="phcB1"
/locus_tag="CNE_1c00500"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 53578..54012
/locus_tag="CNE_1c00510"
/db_xref="GeneID:10916442"
CDS 53578..54012
/locus_tag="CNE_1c00510"
/codon_start=1
/transl_table=11
/product="SoxR family transcriptional regulator"
/protein_id="YP_004683901.1"
/db_xref="GI:339324208"
/db_xref="GeneID:10916442"
/translation="MTSLDIAEVARQAGVPASTLRYYEEKGLIASIGRRGMRRVFDAG
VLERLALIALGRAAGFSLDDIAQMFSPQGQPKIDRQVLAAKADELDRTIRKLTAMRDG
LRHASVCPAPSHMECPTFQRILRAAASGAIGGRKHAHGLPTD"
misc_feature 53587..53970
/locus_tag="CNE_1c00510"
/note="redox-sensitive transcriptional activator SoxR;
Region: SoxR; TIGR01950"
/db_xref="CDD:131005"
misc_feature 53587..53946
/locus_tag="CNE_1c00510"
/note="Helix-Turn-Helix DNA binding domain of putative
transcription regulators from the MerR superfamily;
Region: HTH_MerR-like_sg6; cd04781"
/db_xref="CDD:133408"
misc_feature order(53590..53598,53638..53640,53686..53694)
/locus_tag="CNE_1c00510"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133408"
misc_feature order(53728..53730,53737..53739,53749..53754,53779..53781,
53821..53823,53833..53835,53851..53853,53863..53865,
53872..53877)
/locus_tag="CNE_1c00510"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:133408"
misc_feature order(53902..53904,53926..53928)
/locus_tag="CNE_1c00510"
/note="putative metal binding residues [ion binding];
other site"
/db_xref="CDD:133408"
gene complement(54110..54499)
/gene="tar"
/locus_tag="CNE_1c00520"
/db_xref="GeneID:10916443"
CDS complement(54110..54499)
/gene="tar"
/locus_tag="CNE_1c00520"
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein Tar"
/protein_id="YP_004683902.1"
/db_xref="GI:339324209"
/db_xref="GeneID:10916443"
/translation="MRGHHRQPVCQLEVRALAQRSAQAATEIKTLIESTVGSVSSGSG
QVRRAGDTMSEIVSNVSRVTGIISEITHAAMEQTRGIQEVNMAVSQLDQMVQQNAALV
EQSTAAAAALQTQAGSLAGAVGQFRLG"
misc_feature complement(54188..>54463)
/gene="tar"
/locus_tag="CNE_1c00520"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
gene 55009..56217
/locus_tag="CNE_1c00530"
/db_xref="GeneID:10916444"
CDS 55009..56217
/locus_tag="CNE_1c00530"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683903.1"
/db_xref="GI:339324210"
/db_xref="GeneID:10916444"
/translation="MSVLSLTSAPLRVLALSGALALAACGGGGGGGDDGGGQGTLKVS
MTDAPACGFNNVFVTVNKVRVHSSASAEASAGGWVDIDVVPARKIDLLSLTNGVLTVL
GQTALPAGNYQQVRLVLDANRGGGAGALANSVVPVGGTEQALDTPSAVQSGIKINRPF
TVAKGTLTDLVLDFDACKSVVTRGNGTFGLKPVVTAIPTIVSGEVNGVVSGAPGARVY
AERNGVVVKATVADANGNFKLSPIEQSSTAGPVDVVVVPGSANGKAAGIVRGVPVVVG
TPTAISTAAAPMSLPASTYRRASGTVTPASAEATLRALQLVSGGNFEIAATAAASDTG
AYSMFATEPALPVAAPVIGTYQAALPIPLQADGAAAGKYSVQATSATGTVQTKPTDVN
VADAVVNFSF"
misc_feature 55132..55584
/locus_tag="CNE_1c00530"
/note="Domain of unknown function (DUF4382); Region:
DUF4382; pfam14321"
/db_xref="CDD:206489"
gene 56359..57264
/locus_tag="CNE_1c00540"
/db_xref="GeneID:10916445"
CDS 56359..57264
/locus_tag="CNE_1c00540"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683904.1"
/db_xref="GI:339324211"
/db_xref="GeneID:10916445"
/translation="MAARTAAKAASKPAATSEATSRARSRKAATSAEPVRVGIGGWNF
APWRDNFYPAGLAQARELAYASRHLSAIEINSTYHGTQKRTSFAKWRDETPDDFVFAV
KASRFATNRRVLAESGESIERFIDSGIAELGRKLGPVVWQFAPTKQFDAEDFEAFLQL
LPDSVEGVKLRHVLEVRHDSFQAPDYLKLARKYKAATVFTDSPKFPSMADLTADFVYA
RLMASSEKLKAGYAPRDLDAWAERVCTWAQGHQPADLPTVEDRKPAARKREVFVFFIN
GAKERAPAAAQALLERLDWTPPADD"
misc_feature 56509..57237
/locus_tag="CNE_1c00540"
/note="Protein of unknown function DUF72; Region: DUF72;
pfam01904"
/db_xref="CDD:202037"
gene 57298..58707
/gene="dbpA"
/locus_tag="CNE_1c00550"
/db_xref="GeneID:10916446"
CDS 57298..58707
/gene="dbpA"
/locus_tag="CNE_1c00550"
/EC_number="3.6.4.13"
/codon_start=1
/transl_table=11
/product="ATP-independent RNA helicase DbpA"
/protein_id="YP_004683905.1"
/db_xref="GI:339324212"
/db_xref="GeneID:10916446"
/translation="MNSTPAQPQAGTAFSTLPLSPTMLATLAQLGYDEMTPIQAASLP
ITLAGQDLVAQAKTGSGKTAAFGLALLHRLDPRRFDVQAMVLCPTRELADQVTQEIRR
LARAEENIKVLTLCGGSPMRPQVDSLIHGAHIVVGTPGRILDHIDRGSLDLSGINTLV
LDEADRMLDMGFFDDIAYVASRCPKDRQTLLFSATYPPGIDKLSHRFLRNPQSVKLEA
THDNSTIRQRFYEVEEGERLNAVGRLLDHFRPVSTLAFCNTKARCRELVELLRAQGYQ
ALALHGELEQRERDQVLVQFANRSCSVLVATDVAARGLDIAQLEAVINVEITPDPEVH
VHRIGRTGRADQEGWAFSLVSMDEMGRVGNLEQHHGGEFEWHPLADLRPASNERLLPP
MVTLQMLGGRKEKIRPGDILGALTGDAGFTKEQIGKINVLEMSTYIAVERSIGREAVK
RLNAGKVKGKKVKVRMLTE"
misc_feature 57331..58701
/gene="dbpA"
/locus_tag="CNE_1c00550"
/note="ATP-dependent RNA helicase DbpA; Provisional;
Region: PRK11776"
/db_xref="CDD:183308"
misc_feature 57337..57942
/gene="dbpA"
/locus_tag="CNE_1c00550"
/note="DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing, ribosome
biogenesis and RNA degradation. The name derives from the
sequence of the Walker B motif; Region: DEADc; cd00268"
/db_xref="CDD:28928"
misc_feature 57472..57486
/gene="dbpA"
/locus_tag="CNE_1c00550"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28928"
misc_feature 57781..57792
/gene="dbpA"
/locus_tag="CNE_1c00550"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:28928"
misc_feature 57874..57882
/gene="dbpA"
/locus_tag="CNE_1c00550"
/note="motif III; other site"
/db_xref="CDD:28928"
misc_feature 57970..58356
/gene="dbpA"
/locus_tag="CNE_1c00550"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(58069..58080,58138..58143,58216..58224)
/gene="dbpA"
/locus_tag="CNE_1c00550"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(58240..58242,58303..58305,58315..58317,58324..58326)
/gene="dbpA"
/locus_tag="CNE_1c00550"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 58477..>58656
/gene="dbpA"
/locus_tag="CNE_1c00550"
/note="DbpA RNA binding domain; Region: DbpA; pfam03880"
/db_xref="CDD:202795"
gene complement(58740..59855)
/locus_tag="CNE_1c00560"
/db_xref="GeneID:10916447"
CDS complement(58740..59855)
/locus_tag="CNE_1c00560"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683906.1"
/db_xref="GI:339324213"
/db_xref="GeneID:10916447"
/translation="MAATEPTLAITRLFSRKDALNESRLEAAQEPASAAPGEVLLRLD
RFALTTNNITYAAFGEAMQYWDFFPTGQPQWGHMPVWGFADVVASGVDGIAAGERFYG
YFPIASHIRMQPERVTARGFYDAAEHRAKLTSAYNQYTRVQNDAAYAPELEHYQMLYR
PLFITSFMLADFLQDNHFFGAQRLVVSSASSKTAYGTAFCLRDFDGITLTGLTSARNR
AFVEDLGCYDSTVTYDELASVPVDEPTLYVDFSGDESLRARVHAHFGDSLVYDCFAGS
AQNTGFLRDLHLPGPRPEFYFAPVQIRKRNADWGPQEVNRRFNAAQRRFIDQARDPAN
RWLALVEERGFEAAQARIARLAAGSGAPQEGYVVVVG"
misc_feature complement(58770..59720)
/locus_tag="CNE_1c00560"
/note="Protein of unknown function (DUF2855); Region:
DUF2855; pfam11017"
/db_xref="CDD:204582"
gene 59921..60634
/locus_tag="CNE_1c00570"
/db_xref="GeneID:10916448"
CDS 59921..60634
/locus_tag="CNE_1c00570"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_004683907.1"
/db_xref="GI:339324214"
/db_xref="GeneID:10916448"
/translation="MPRIYRRANAAGFGNEAPAAGDLKRPATPRSKPLKRPSQQRAHF
TVNAIYDAFVRIWRRDGWDGVTTRAVALEAGFSVGALYEYFPSKEALASGYVRHMVET
MLARIDTEVTQRKNADWRTRVRRLVAIACGADDEATGIVFDADIIGLEPRIAEPKHHR
RVFEEFCEAWRRALCACPDLPTAPDAAKVQALVLAVWGARRYRLLLQGAALQPAQWVA
EMQALCLAALDEKATDAQP"
misc_feature 60023..60526
/locus_tag="CNE_1c00570"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 60065..60196
/locus_tag="CNE_1c00570"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 60789..61229
/gene="guaB1"
/locus_tag="CNE_1c00580"
/db_xref="GeneID:10916449"
CDS 60789..61229
/gene="guaB1"
/locus_tag="CNE_1c00580"
/EC_number="1.1.1.205"
/codon_start=1
/transl_table=11
/product="inosine-5'-monophosphate dehydrogenase"
/protein_id="YP_004683908.1"
/db_xref="GI:339324215"
/db_xref="GeneID:10916449"
/translation="MKTARQVLESKPSQAIYSVPPTATVYAALQLMAEKGIGALLVIE
HGAIQGIVSERDYARKVILMQRTSRETLVRDIMTNAVIYVGASQTTDECMALMTRHRL
RHLPVMEGEELIGMLSIGDLVKDIISEQQFIIEQLEHYITGGGR"
misc_feature 60828..61160
/gene="guaB1"
/locus_tag="CNE_1c00580"
/note="The CBS domain, named after human CBS, is a small
domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range of
different proteins. CBS domains usually occur in tandem
repeats. They associate to form a so-called...; Region:
CBS_pair_10; cd04623"
/db_xref="CDD:73122"
misc_feature 60834..61157
/gene="guaB1"
/locus_tag="CNE_1c00580"
/note="FOG: CBS domain [General function prediction only];
Region: COG0517"
/db_xref="CDD:30863"
gene complement(61280..62320)
/locus_tag="CNE_1c00590"
/db_xref="GeneID:10916450"
CDS complement(61280..62320)
/locus_tag="CNE_1c00590"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683909.1"
/db_xref="GI:339324216"
/db_xref="GeneID:10916450"
/translation="MTETPRQATGQAPDAAGPELGQWHPVLAIEQARGDGPFPARLFG
RALVLWRNADGWHAWDDRCPHRGAAFTLGAVRDGLLHCGYHGWRFASGGRCTRYPAHP
ELVPAPRACATTHAVREGYGLLWVRLGGDGTEAVPELPPFPEYDDAECRHVVCGPYDV
ATSAPRLVENFLDMAHFGYVHDGYLGDPAHTEVPPYEVEAIGDARKPDALRTIGCRAW
QPRAHASAAGGAMVEYEYRVVAPYAAILTKVPDLGDNHRGAIALFIGPRDEESSRVWF
VMSLVTEDDDASLREFQDTIFLQDKQIVESQQPRRLPLRTGVEVPQPADKLAGAYRRY
LAAHGVKFGTLG"
misc_feature complement(61292..62263)
/locus_tag="CNE_1c00590"
/note="Phenylpropionate dioxygenase and related
ring-hydroxylating dioxygenases, large terminal subunit
[Inorganic ion transport and metabolism / General function
prediction only]; Region: HcaE; COG4638"
/db_xref="CDD:34257"
misc_feature complement(61883..62254)
/locus_tag="CNE_1c00590"
/note="Rieske domain; a [2Fe-2S] cluster binding domain
commonly found in Rieske non-heme iron oxygenase (RO)
systems such as naphthalene and biphenyl dioxygenases, as
well as in plant/cyanobacterial chloroplast b6f and
mitochondrial cytochrome bc(1) complexes; Region: Rieske;
cl00938"
/db_xref="CDD:207253"
misc_feature complement(order(62054..62056,62060..62062,62066..62071,
62075..62077,62123..62128,62132..62134))
/locus_tag="CNE_1c00590"
/note="iron-sulfur cluster [ion binding]; other site"
/db_xref="CDD:58538"
misc_feature complement(order(62060..62062,62066..62068,62075..62077,
62123..62128,62132..62134))
/locus_tag="CNE_1c00590"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:58538"
misc_feature complement(61322..61855)
/locus_tag="CNE_1c00590"
/note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
ligand-binding domain superfamily; Region: SRPBCC;
cl14643"
/db_xref="CDD:209878"
misc_feature complement(order(61409..61411,61418..61426,61433..61435,
61436..61441,61487..61489,61493..61495,61499..61501,
61505..61507,61523..61525,61529..61531,61535..61540,
61589..61591,61595..61597,61601..61603,61607..61609,
61613..61615,61670..61672,61676..61678,61682..61684,
61688..61690,61730..61732,61805..61810,61814..61822,
61841..61843,61847..61849,61853..61855))
/locus_tag="CNE_1c00590"
/note="hydrophobic ligand binding site; other site"
/db_xref="CDD:176854"
gene 63187..64134
/locus_tag="CNE_1c00600"
/db_xref="GeneID:10916451"
CDS 63187..64134
/locus_tag="CNE_1c00600"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily MFS DHA2 family"
/protein_id="YP_004683910.1"
/db_xref="GI:339324217"
/db_xref="GeneID:10916451"
/translation="MAGVRAWTGPGALLLAVAIVAFLLAMSWGGDVYDWLSPELGALL
LAAVAAVVLLTWQERRAADPMLPPRLFANRAYVMGVAASALAALDIFLCIFALPLHFQ
LVRGADASTSGLLVMPFLLATVAGNFIVAWLAPRVGRMRGILTGGYIAAALGLIVLAL
VTPAMPLAVVLAAMTLAGVGLGMTMVSTLISVQNVLERRDTGAGTGALLVLRSLGSAI
GGALAGTLLTLEFRHALAASGVTQALDLGALRHGSEAFAQLSPSVRAVLAGGVESGFH
LIFAAGAAAAVLALLIVRRMPDLELRGSVTEHAATLAMD"
misc_feature <63355..>63804
/locus_tag="CNE_1c00600"
/note="drug resistance transporter, EmrB/QacA subfamily;
Region: efflux_EmrB; TIGR00711"
/db_xref="CDD:129794"
gene 64215..64859
/gene="gpwA"
/locus_tag="CNE_1c00610"
/db_xref="GeneID:10916452"
CDS 64215..64859
/gene="gpwA"
/locus_tag="CNE_1c00610"
/EC_number="1.11.1.9"
/codon_start=1
/transl_table=11
/product="glutathione peroxidase"
/protein_id="YP_004683911.1"
/db_xref="GI:339324218"
/db_xref="GeneID:10916452"
/translation="MTRRFPSSATLRQLRPAALAGALALAAAGAALLPHPARAADKPA
AAPAPQATGACPASLNFKFPRLQDEAPQNLCQYAGKVVLVVNTASYCGFTPQYEGLEA
LYSKYRDRGLVVLGFPSNDFSQEPGSEKQIADFCYNTYGVKFPMLGKSHVRGSEANPM
YALLAKETGTAPKWNFYKYLIGRNGQVVGSYNSKTTPDDKKFVAKIEELLASPR"
misc_feature 64389..64811
/gene="gpwA"
/locus_tag="CNE_1c00610"
/note="Glutathione (GSH) peroxidase family; tetrameric
selenoenzymes that catalyze the reduction of a variety of
hydroperoxides including lipid peroxidases, using GSH as a
specific electron donor substrate. GSH peroxidase contains
one selenocysteine residue per...; Region: GSH_Peroxidase;
cd00340"
/db_xref="CDD:48492"
misc_feature order(64485..64487,64584..64586,64734..64736)
/gene="gpwA"
/locus_tag="CNE_1c00610"
/note="catalytic residues [active]"
/db_xref="CDD:48492"
misc_feature order(64581..64583,64590..64592,64596..64598,64605..64607,
64614..64616,64626..64628)
/gene="gpwA"
/locus_tag="CNE_1c00610"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48492"
gene 65005..65790
/locus_tag="CNE_1c00620"
/db_xref="GeneID:10916453"
CDS 65005..65790
/locus_tag="CNE_1c00620"
/codon_start=1
/transl_table=11
/product="beta-lactamase-like protein"
/protein_id="YP_004683912.1"
/db_xref="GI:339324219"
/db_xref="GeneID:10916453"
/translation="MGITLYDADGHTCLMFTDLVEEAHGEAVQTNQFLVVDHGHGALI
DPGGQMTYSELYLTISRYFPPKQLDYVLASHADPDIVASVGRWLTGSDCRILISSVWA
RFLPHFCQAGKTAGRIVTIPDAGMHIPLGHSSLVAVPAHFLHSEGNFQFYDPISKILF
SGDLGAAMTGAKAAGTTVTDFDAHTRLMLPFHQRYMSGSRACRLWAAMARSMDIEWIV
PQHGPSFRGKHMVARFIDWIDALACGLDLLTQDHYRVPAPAMR"
misc_feature 65014..>65775
/locus_tag="CNE_1c00620"
/note="Uncharacterized flavoproteins [Energy production
and conversion]; Region: FpaA; COG0426"
/db_xref="CDD:30775"
misc_feature 65095..>65496
/locus_tag="CNE_1c00620"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
gene complement(65791..66417)
/gene="gstB"
/locus_tag="CNE_1c00630"
/db_xref="GeneID:10916454"
CDS complement(65791..66417)
/gene="gstB"
/locus_tag="CNE_1c00630"
/EC_number="2.5.1.18"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase"
/protein_id="YP_004683913.1"
/db_xref="GI:339324220"
/db_xref="GeneID:10916454"
/translation="MKLYYTPGVCSMAVHIALREAGLPVTLAKVDLLHHKLAVPENGT
DDYYTINPRGYVPLLQLDDGSRHTEAASLLQYIADLVPERALLPAAGTRERLEATGWI
TLVSTELHKVFSPWLWHKETAQSTVEACKAKLQLRFAELDKHLQGRQYLTGDTFTVAD
AYCFTILGWARMLMMPLTAYPTLQDYLSRIAARPAVQEAMRAEGLVRD"
misc_feature complement(65803..66417)
/gene="gstB"
/locus_tag="CNE_1c00630"
/note="glutathionine S-transferase; Provisional; Region:
PRK10542"
/db_xref="CDD:182533"
misc_feature complement(66172..66417)
/gene="gstB"
/locus_tag="CNE_1c00630"
/note="GST_N family, Class Beta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens;
Region: GST_N_Beta; cd03057"
/db_xref="CDD:48606"
misc_feature complement(order(66181..66183,66193..66195,66358..66363,
66373..66375,66379..66381,66394..66399))
/gene="gstB"
/locus_tag="CNE_1c00630"
/note="C-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:48606"
misc_feature complement(order(66208..66213,66250..66255,66388..66390))
/gene="gstB"
/locus_tag="CNE_1c00630"
/note="GSH binding site (G-site) [chemical binding]; other
site"
/db_xref="CDD:48606"
misc_feature complement(order(66181..66183,66190..66192,66205..66207,
66211..66216,66253..66255))
/gene="gstB"
/locus_tag="CNE_1c00630"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48606"
misc_feature complement(65818..66141)
/gene="gstB"
/locus_tag="CNE_1c00630"
/note="C-terminal, alpha helical domain of Class Beta
Glutathione S-transferases; Region: GST_C_Beta; cd03188"
/db_xref="CDD:198297"
misc_feature complement(order(66019..66021,66031..66033,66058..66060,
66085..66087,66097..66099,66109..66111,66118..66120,
66127..66132,66139..66141))
/gene="gstB"
/locus_tag="CNE_1c00630"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198297"
misc_feature complement(order(65821..65823,65833..65835,65839..65841,
65911..65913,65923..65925,65944..65946,66088..66090,
66133..66135))
/gene="gstB"
/locus_tag="CNE_1c00630"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198297"
misc_feature complement(order(65902..65904,65911..65913,65920..65922,
66067..66069,66073..66078,66085..66090,66100..66102))
/gene="gstB"
/locus_tag="CNE_1c00630"
/note="substrate binding pocket (H-site) [chemical
binding]; other site"
/db_xref="CDD:198297"
gene complement(66573..67310)
/gene="hyuE1"
/locus_tag="CNE_1c00640"
/db_xref="GeneID:10916455"
CDS complement(66573..67310)
/gene="hyuE1"
/locus_tag="CNE_1c00640"
/EC_number="5.1.99.5"
/codon_start=1
/transl_table=11
/product="hydantoin racemase HyuE"
/protein_id="YP_004683914.1"
/db_xref="GI:339324221"
/db_xref="GeneID:10916455"
/translation="MKLLIVNPNISESVTALIEAEARRTAAATTTLQMATAAFGVAYI
ETRFEALVGGYATACAAAEHAGQFDGLVVAAFGDPGLAGLKELFDVPVVGMTEAALAS
ACLLGQRFSIIAISHRIQAWYRECVAANGLSSRLASVRSLQEPLRDIGSVQEDHAARL
EQLALQAIEQDGADVIIVAGAPLAGLARSLQGRIPVPVVDGVSSAVRHCESLVALRAG
SATQGSFARPPRKPNAGLPPALAKLLD"
misc_feature complement(66627..>67133)
/gene="hyuE1"
/locus_tag="CNE_1c00640"
/note="Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race;
cl00518"
/db_xref="CDD:212232"
gene complement(67342..68763)
/gene="hyuA1"
/locus_tag="CNE_1c00650"
/db_xref="GeneID:10916456"
CDS complement(67342..68763)
/gene="hyuA1"
/locus_tag="CNE_1c00650"
/EC_number="3.5.2.-"
/codon_start=1
/transl_table=11
/product="D-hydantoinase HyuA"
/protein_id="YP_004683915.1"
/db_xref="GI:339324222"
/db_xref="GeneID:10916456"
/translation="MSAHDSLDLVIRRADVVTASDRFRCDIGVRNGQIVALGHALPQA
AREIDADGLLALPGGVDGHCHLDQPMPDGLRMADDFFTGTRAAVCGGTTTVIPFAAQE
KGASLKAAVADYHRRAEGRAVIDYAFHLIVADPTPAVLADELPTLIRKGYSSFKVYMT
YDDLKLSDREMLSVLDVAKQNGALVMVHAENADCISWLTDKLVGEGRIAPRFHGLARP
AAVEREATHRAITFAELVDVPILIVHVSGKEAIEQIRWAQGRGLQILAETCPQYLYLT
ADDMALPGDDGYEGAKCVCSPPPRDPENQAAVWRALTNGVFSVFSSDHAPFRYDDPQG
KQPGGERPSFEHIPNGVPGIETRLPLLFDGVARGKLSLHQFVELTSWRPARLYGLYPR
KGTIAIGADADIVLWDPNKRVQIRNSALHHAVDYTPYEGIEVTGWPVHCFSRGEMLVR
DGQYQEPQAGRGQFLPAGAPMLG"
misc_feature complement(67354..68742)
/gene="hyuA1"
/locus_tag="CNE_1c00650"
/note="dihydropyrimidinase; Provisional; Region: PRK13404"
/db_xref="CDD:184033"
misc_feature complement(67402..68739)
/gene="hyuA1"
/locus_tag="CNE_1c00650"
/note="D-hydantoinases (D-HYD) also called
dihydropyrimidases (DHPase) and related proteins; DHPases
are a family of enzymes that catalyze the reversible
hydrolytic ring opening of the amide bond in five- or
six-membered cyclic diamides, like dihydropyrimidine...;
Region: D-HYD; cd01314"
/db_xref="CDD:30057"
misc_feature complement(order(67579..67581,67594..67596,67609..67611,
67978..67983,67987..67992,68071..68073,68080..68082,
68092..68094,68104..68106,68173..68175,68182..68184,
68191..68193,68254..68256,68653..68658,68695..68697,
68701..68706))
/gene="hyuA1"
/locus_tag="CNE_1c00650"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:30057"
misc_feature complement(order(67795..67797,68032..68034,68200..68202,
68296..68298,68569..68571,68575..68577))
/gene="hyuA1"
/locus_tag="CNE_1c00650"
/note="active site"
/db_xref="CDD:30057"
gene complement(68768..69505)
/locus_tag="CNE_1c00660"
/db_xref="GeneID:10916457"
CDS complement(68768..69505)
/locus_tag="CNE_1c00660"
/EC_number="5.2.1.1"
/codon_start=1
/transl_table=11
/product="maleate cis-trans isomerase"
/protein_id="YP_004683916.1"
/db_xref="GI:339324223"
/db_xref="GeneID:10916457"
/translation="MTEMTKQIRLGMLTPSSNTALEPITSAMVSGLPNVSAHFSRFTV
TEISLRDQALGQFNLDKILAAASLLADARVDVIAWNGTSSGWLGFDKDEALCKQITEA
TGIPATTSVLALNEILEKTGARNFGLATPYLDDVQQRIIANYERSGFNCVAESHLDLH
VNYSFAEVEEDTIREMVRGLAQHQPQAITTFCTNLRAAHLAEELEAETGIPLYDTIST
VVWKSLRLCGVDTRELRGWGRLFREVE"
misc_feature complement(68777..69481)
/locus_tag="CNE_1c00660"
/note="Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race;
cl00518"
/db_xref="CDD:212232"
gene complement(69567..70763)
/gene="ampC"
/locus_tag="CNE_1c00670"
/db_xref="GeneID:10916458"
CDS complement(69567..70763)
/gene="ampC"
/locus_tag="CNE_1c00670"
/codon_start=1
/transl_table=11
/product="beta-lactamase AmpC"
/protein_id="YP_004683917.1"
/db_xref="GI:339324224"
/db_xref="GeneID:10916458"
/translation="MNRFPRMLAAALLVLGAAQAHAAPAAPSAPAGDGLPTAQPEAVG
VDSAKLVALSEWIRRDKLDVRSLLVIKDGKLVFERYGDGLSRDYNHELYSVTKFISAL
LVGTLVGDGKLSAEDTPAQRLAAARPDLAPALADKQAIQLRHLMSMSSGLSYKLVEGT
DTLYYGVPDRLRVAATAAVRTKAGAEFDYIDVNPVLVGATVTQAAGQPEDQYAKARLF
GPLGMSHYRWDGADGKGAVSGGWGLRLRSIDMAKLGMLMLNEGRWNGQQIVPASWVAR
MTTPAGPAKDYGFYCWVNNIVQSEREFSAMGYKGQFITVLPKQNAVIVMNSIMSTQGG
LRDAAYLDLYRRMVNDYVLPALQAGKSVKPDAARQAALRKELELARSSQGVPGTALAF
NDKPEQ"
misc_feature complement(69702..70655)
/gene="ampC"
/locus_tag="CNE_1c00670"
/note="Beta-lactamase class C and other penicillin binding
proteins [Defense mechanisms]; Region: AmpC; COG1680"
/db_xref="CDD:31866"
misc_feature complement(69726..70568)
/gene="ampC"
/locus_tag="CNE_1c00670"
/note="Beta-lactamase; Region: Beta-lactamase; pfam00144"
/db_xref="CDD:201034"
gene complement(70868..72166)
/gene="gudP"
/locus_tag="CNE_1c00680"
/db_xref="GeneID:10916459"
CDS complement(70868..72166)
/gene="gudP"
/locus_tag="CNE_1c00680"
/codon_start=1
/transl_table=11
/product="glucarate transporter GudP"
/protein_id="YP_004683918.1"
/db_xref="GI:339324225"
/db_xref="GeneID:10916459"
/translation="METTSRATVITEAKTSVRWKIFLMMLFLVAINYIDRASLSVAMP
LIAKEFDLSPAMQGLILSSFFWTYAFMQIPGGMLADKYKPRIVIACATVFWGFFQAIA
AVCTNATSLLITRLGLGASEAPIYPAGGKLNAIWMTQNERGRGATLLDGGAPLGAALG
SLIIAGLISELGSWRMSFVVAGVGTVLAGFVAWWYIRNSPREHSGVNELEARHIEEAQ
AREHSAEPANLSGRSLDFFKYRSVWCMAISWMCFNAVFYGLLTWMPTYLSKARGFDLK
TMGGASFIIFMSGFVGELVGGWIADKWKEAGGRPNVVMRTLFGIAAVVATVSIFSVAY
VTDAVAVVALLSSTLFFLRWCGLFWSVPSMLATRNKIGFLGGLMNLGGNIAGISVPII
VGLIVQATGSYFLALMFFAAAGVGLLFASTAIDYETKIPV"
misc_feature complement(<71177..72103)
/gene="gudP"
/locus_tag="CNE_1c00680"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(70958..72085)
/gene="gudP"
/locus_tag="CNE_1c00680"
/note="D-galactonate transporter; Region: 2A0114;
TIGR00893"
/db_xref="CDD:162094"
misc_feature complement(order(71288..71290,71300..71302,71309..71311,
71321..71323,71333..71335,71375..71377,71384..71389,
71396..71401,71408..71410,71693..71695,71711..71716,
71723..71728,71765..71767,71774..71779,71786..71791,
71798..71803,71939..71944,71948..71953,71963..71965,
71972..71977,71984..71986,72035..72040,72044..72052,
72059..72061))
/gene="gudP"
/locus_tag="CNE_1c00680"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 72208..73083
/locus_tag="CNE_1c00690"
/db_xref="GeneID:10916460"
CDS 72208..73083
/locus_tag="CNE_1c00690"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_004683919.1"
/db_xref="GI:339324226"
/db_xref="GeneID:10916460"
/translation="MAFCATGRSIGYVICNYNACKSLILRYCACTILVCGSLVVVHFP
ILVTSVTQTLSQTTRLRTLGMSAEIAARLRTMIEEGELPPGARIDERAFCETFDVSKT
PLREALKVLVSEGLVLHRQYIGYRVAPLDLEELRATFETLHGLEALAGELAAQRLGVA
AMAKLERRHLAMIDAHAAGRRTDYFRINQEIHQLIIDGAANPVLAGVYAALMSKVHRA
RGAANADTIRWQESHEEHEAIMAALREPGRPRLAQVLRAHSENTAKEVLSVVAQTLAE
AGATGASGAALKKSA"
misc_feature 72403..72999
/locus_tag="CNE_1c00690"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:32369"
misc_feature 72409..72591
/locus_tag="CNE_1c00690"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(72472..72474,72475..72480,72502..72516,72520..72525,
72532..72534,72562..72567,72571..72582)
/locus_tag="CNE_1c00690"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 72670..72981
/locus_tag="CNE_1c00690"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:203742"
gene 73109..73957
/locus_tag="CNE_1c00700"
/db_xref="GeneID:10916461"
CDS 73109..73957
/locus_tag="CNE_1c00700"
/EC_number="4.3.2.3"
/codon_start=1
/transl_table=11
/product="ureidoglycolate lyase"
/protein_id="YP_004683920.1"
/db_xref="GI:339324227"
/db_xref="GeneID:10916461"
/translation="MKLVRVGNPGAERPGMIDAQGRVRDLSGVVADIGAAQLAPAALA
QLAQVDPASLPVIEGARYGVPWSGVGKIVAIGLNYADHAAEAGMPLPAEPIVFLKANS
SLNGPDDAVMLPFGSEKTDWEVELGVVIGSTARNVSREAALNHVAGYCVVNDVSEREF
QIERGGTWDKGKGCDTFCPAGPWLVTRDEVPDPQALGLWLEVNGERVQKGSTATMVFD
VATVVSYVSRFMTLLPGDLIATGTPPGVGMGFKPPRFLKAGDTMRLGVDGLGEQTQQV
VPYGER"
misc_feature 73136..73948
/locus_tag="CNE_1c00700"
/note="2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway) [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: MhpD; COG0179"
/db_xref="CDD:30528"
misc_feature 73319..73939
/locus_tag="CNE_1c00700"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; pfam01557"
/db_xref="CDD:201859"
gene 74227..75474
/gene="hipO1"
/locus_tag="CNE_1c00710"
/db_xref="GeneID:10916462"
CDS 74227..75474
/gene="hipO1"
/locus_tag="CNE_1c00710"
/EC_number="3.5.1.32"
/codon_start=1
/transl_table=11
/product="hippurate hydrolase HipO"
/protein_id="YP_004683921.1"
/db_xref="GI:339324228"
/db_xref="GeneID:10916462"
/translation="MSEHAPEIESYLGTTLTASPASPLKHRYCALADTLDSRAELEVI
RRNIHQHPELAFDEVRTSGLVASLLEAWGYTVTRGVGGTGVVGTLRCGDSGHSVGIRA
DMDALPIHERTALPYASVNAGRMHACGHDGHTAILLGAAKQLARTRNFDGTVHLIFQP
AEEIGAGGGAERMLADGLFERFPCDAIFGLHNHPGVEQGSFLFRSGPFMAACDTVTIT
IRGKGGHAARPHQSVDPILVAGSLVMALQSVVARYVDPNETAVVTIGTLHAGHAPNVI
PDNARMEISVRSFNPEVRASVENRIRQLATSHAEGYGAVAEVDYVRGYPVLVNSERET
EFARQVAEELVGADKVVDQAARIAGSEDFAYFLQQRPGCFVRLGNGANQPLLHNAGYD
FNDDNLTVGAAYWTRLVERYLKR"
misc_feature 74314..75471
/gene="hipO1"
/locus_tag="CNE_1c00710"
/note="Metal-dependent
amidase/aminoacylase/carboxypeptidase [General function
prediction only]; Region: AbgB; COG1473"
/db_xref="CDD:31662"
misc_feature 74341..75459
/gene="hipO1"
/locus_tag="CNE_1c00710"
/note="M20 Peptidase Aminoacylase 1 subfamily; Region:
M20_Acy1_like1; cd05666"
/db_xref="CDD:193542"
misc_feature order(74608..74610,74614..74616,74713..74715,74797..74799,
75385..75387)
/gene="hipO1"
/locus_tag="CNE_1c00710"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193542"
misc_feature order(74866..74868,74932..74937,74947..74949,74956..74958,
74965..74967,75016..75036,75046..75051,75055..75057,
75073..75081)
/gene="hipO1"
/locus_tag="CNE_1c00710"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:193542"
gene complement(75492..76364)
/gene="fsr"
/locus_tag="CNE_1c00720"
/db_xref="GeneID:10916463"
CDS complement(75492..76364)
/gene="fsr"
/locus_tag="CNE_1c00720"
/codon_start=1
/transl_table=11
/product="fosmidomycin resistance protein Fsr"
/protein_id="YP_004683922.1"
/db_xref="GI:339324229"
/db_xref="GeneID:10916463"
/translation="MPRAPRPLSASGAARRRDQHAPPAPTPETLALADTYAEPPPYVR
FDRSPLPVTAMAADYLPGHVTNPHQHPHAQLIHAVHGVMVVATAEGQWIVPPTRGMWM
PGGTTHWIRMVGRVQMRTAYIRPDAAPDLPQRCTVLGISALLRELILAAIDIPLPYAP
DTRDARLMRLLLDEVMLVPSLPLHLPRPADGSLRQICDAITGAPDTALTLADWGSRLE
VDPKTIQRRFARETGMTFGQWRQQARLLAALEKLAAGSKVVDVALDLGYDSPSAFATM
FRRQFGVPPSAFFR"
misc_feature complement(75852..76187)
/gene="fsr"
/locus_tag="CNE_1c00720"
/note="Cupin domain; Region: Cupin_2; cl09118"
/db_xref="CDD:212615"
misc_feature complement(75501..75743)
/gene="fsr"
/locus_tag="CNE_1c00720"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(75495..>75596)
/gene="fsr"
/locus_tag="CNE_1c00720"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 76363..77727
/locus_tag="CNE_1c00730"
/db_xref="GeneID:10916465"
CDS 76363..77727
/locus_tag="CNE_1c00730"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_004683923.1"
/db_xref="GI:339324230"
/db_xref="GeneID:10916465"
/translation="MSFSPRLRTYSRRTGAGAPASIGAKFHPGRRPRWPLSVCREPPM
STTIDSAPAGATPSATSPQAERTGFRVLSAISFAHFLNDMIQSLILAIYPMLKGGFNL
SFTQIGLLTMTYQVTASLLQPVVGLYTDKHPKPHSLAIAMAFTLAGLLLLSVAPTYGV
LLVAAALVGTGSSIFHPESSRVARMASGGQHGLAQSIFQVGGNGGSAMGPLLAALIVH
QQASLAWFSLAALVGMVVLWRIGGWYARQLAQGARKRKAAGAVASPVPTRVVVRAMVV
LMVLVFSKYFYMASLTSYYTFYLMERFGLARQDAQLHLFMFLAAVAAGTILGGPIGDR
IGRKRVIWASILGVAPFTLMLPHVGLFWTTVLTFIIGFILASAFSAILVFAQELIPGK
VGMVSGLFFGFAFGMGGIGAAVLGGMADTHGIRAVYEYCAYLPLLGLLTVFLPDLRER
PQRA"
misc_feature 76576..77532
/locus_tag="CNE_1c00730"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 76585..77532
/locus_tag="CNE_1c00730"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:191813"
misc_feature order(76618..76620,76627..76635,76639..76644,76693..76695,
76702..76707,76714..76716,76726..76731,76735..76740,
76876..76881,76888..76893,76900..76905,76909..76911,
76945..76950,76957..76962,76978..76980,77215..77217,
77224..77229,77236..77241,77248..77250,77290..77292,
77302..77304,77314..77316,77323..77325,77335..77337,
77473..77475,77482..77487,77494..77496,77506..77511,
77518..77520)
/locus_tag="CNE_1c00730"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene complement(77731..78282)
/gene="pecS"
/locus_tag="CNE_1c00740"
/db_xref="GeneID:10916464"
CDS complement(77731..78282)
/gene="pecS"
/locus_tag="CNE_1c00740"
/codon_start=1
/transl_table=11
/product="HTH-typetranscriptional regulator PecS"
/protein_id="YP_004683924.1"
/db_xref="GI:339324231"
/db_xref="GeneID:10916464"
/translation="MTTRRKPEDTPDHVDGILAQWARERPDLDASPMGVIGRLGRLNR
HTSRAIEAALGETGLQPWEFDVLATLRRAGPPYALSPGALIGSLMITSGTMTNRLDHL
ERAGLVRRQPNPEDRRGLLVELTEAGRERVDRALELHVANEHRLLADLTAAERAQLAA
LLRRWLRMFEPPLGGGGEGNEPA"
misc_feature complement(77842..78129)
/gene="pecS"
/locus_tag="CNE_1c00740"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature complement(77929..78096)
/gene="pecS"
/locus_tag="CNE_1c00740"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
gene 78389..79303
/gene="pecM"
/locus_tag="CNE_1c00750"
/db_xref="GeneID:10916466"
CDS 78389..79303
/gene="pecM"
/locus_tag="CNE_1c00750"
/codon_start=1
/transl_table=11
/product="protein PecM"
/protein_id="YP_004683925.1"
/db_xref="GI:339324232"
/db_xref="GeneID:10916466"
/translation="MKTTASSIRTAPGGVTVRDILLTGLAPGIWGSTYLVTSQWLPPG
QPLLSGVIRALPAGLAMLAFGRQLPRGSWWWRAAVLGVLNIGFFQAMLFIAAYRLPGG
VAATVGAIQPLIVVVLAWAWLGARPRSAAWMAGVGGLLGVALLVLGPAARLDAIGVAA
AAAGAVSMAVGTVLTRHWRPPVSPLVLTAWQLCAGGLFLLPFALVLEPLPGHFTLANW
LGYAWLSIVGAGFSYALWFRGVGRMPSSAVAALGLLSPVSATVLGFLVLGQALTAMQA
AGALLVLGSVWLGQRAATPVAVARTQPA"
misc_feature 78473..78769
/gene="pecM"
/locus_tag="CNE_1c00750"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
misc_feature 78476..79246
/gene="pecM"
/locus_tag="CNE_1c00750"
/note="Carboxylate/Amino Acid/Amine Transporter; Region:
2A78; TIGR00950"
/db_xref="CDD:162128"
misc_feature 78902..79252
/gene="pecM"
/locus_tag="CNE_1c00750"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene 79349..79648
/locus_tag="CNE_1c00760"
/db_xref="GeneID:10916467"
CDS 79349..79648
/locus_tag="CNE_1c00760"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683926.1"
/db_xref="GI:339324233"
/db_xref="GeneID:10916467"
/translation="MAGMKSAVPPSPPSIQAASAPSATPACERCLALAADPRRREPPS
CLALRGTVPLVSQSAAGVPFSMLSFTCRDCGTVWRLYDRANELFVSWVPERPLVR"
gene 79754..80737
/gene="bugT1"
/locus_tag="CNE_1c00770"
/db_xref="GeneID:10916468"
CDS 79754..80737
/gene="bugT1"
/locus_tag="CNE_1c00770"
/codon_start=1
/transl_table=11
/product="extra-cytoplasmic solute receptor BugT"
/protein_id="YP_004683927.1"
/db_xref="GI:339324234"
/db_xref="GeneID:10916468"
/translation="MAFPFRSSLLAALCVTSGTAALPAAAADAYPSRPIRLIVAYPTG
GISDTVARALGERLSAQMGTSVVVENKAGAGGSIGIDAVAKAAPDGYTLGFAATSPLT
LNPHVGRVNYDPQKDVAPVMSVMYSPVLVVATSGFSGKSFADVVGQASAKPGSVRWAT
SGLGTVGHVVLEQIKQKSKADITLIPYKGAGQQMNDALGGQFEVMSTNASPVLTQHMQ
AGRLRALAVGAPRRLESLPSVPTLAELGYPKANLTSTFGIFAPGKTPAAIISRLNAEL
NKALAEPEVHERLLKGGEVPTGGTPAQFAKAIREESAENARIVKEAGIKAD"
misc_feature 79841..80725
/gene="bugT1"
/locus_tag="CNE_1c00770"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3181"
/db_xref="CDD:32994"
misc_feature 79901..80725
/gene="bugT1"
/locus_tag="CNE_1c00770"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene complement(80770..81504)
/locus_tag="CNE_1c00780"
/db_xref="GeneID:10916469"
CDS complement(80770..81504)
/locus_tag="CNE_1c00780"
/codon_start=1
/transl_table=11
/product="OmpR family response regulator"
/protein_id="YP_004683928.1"
/db_xref="GI:339324235"
/db_xref="GeneID:10916469"
/translation="MLCPSIGAFRCARAGATLVNIAALQADPTLAVSIEQTLRLNGHQ
CARYLSGRTMIGALRGRSFDLLMLDCDAPGIPALEVLAWVRRTLGNEMPVILTGTSNE
EAFVAACFAQGADSYVPKPLRTAELAARVLALLRRARPTRDECDLEHGVFRFATAERR
VWVQGKPVLLAPKEFDLAVLLFRNLGSLVLRQTMADQVWRYHMDPASRTVDSHLSRVR
TKLALWPHNGVRLSSVYGLGSRLDAA"
misc_feature complement(80776..81426)
/locus_tag="CNE_1c00780"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature complement(81142..81426)
/locus_tag="CNE_1c00780"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(81142..81147,81154..81156,81211..81213,
81274..81276,81298..81300))
/locus_tag="CNE_1c00780"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(81298..81300)
/locus_tag="CNE_1c00780"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(81274..81282,81286..81291))
/locus_tag="CNE_1c00780"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(81142..81147)
/locus_tag="CNE_1c00780"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(80782..81066)
/locus_tag="CNE_1c00780"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature complement(order(80791..80793,80806..80808,80842..80847,
80869..80871,80878..80880,80932..80937,80992..80994))
/locus_tag="CNE_1c00780"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene 81635..81796
/locus_tag="CNE_1c00790"
/db_xref="GeneID:10916470"
CDS 81635..81796
/locus_tag="CNE_1c00790"
/codon_start=1
/transl_table=11
/product="signal transduction histidine kinase"
/protein_id="YP_004683929.1"
/db_xref="GI:339324236"
/db_xref="GeneID:10916470"
/translation="MSRWCSVSAARLALLCAQRVVAGHSGVLVPLQSMGEAASPAGWY
LWLRRRPRA"
gene complement(81846..82949)
/locus_tag="CNE_1c00800"
/db_xref="GeneID:10916471"
CDS complement(81846..82949)
/locus_tag="CNE_1c00800"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683930.1"
/db_xref="GI:339324237"
/db_xref="GeneID:10916471"
/translation="MKKSAIVLAAGSLLAGSAFAQSSVTLYGIVDQSIRFTTNSDAQN
HSQTQLSNGAVTNSRWGLKGSESLGNNLKAIFQLENGFDPDTGKANQGGRLFGRQAYV
GLSGDFGAIKLGRQYTEGFNFFGDYDPLTIGNYDQNAWPFFLTQFRSDNVISYSGKFG
GLNVGASYGFGEKPGSFTHAQTNPPNGNAPYFGARAAYESGPWGIGGVYQEFRDTNGN
KQQMWGAAGKYAFGPAKVFLGYIGGKDKTGLIDAAFFTPANSANPIPAGGNYTASPRK
DNIGYIGATYQATPALALTGVFYGDHIKNTNGLADVSGNRYTGVLLAEYSLSKRTQVY
GTVDYNKVTGGAKTQLPGRDNQLGLGAGIRHIF"
misc_feature complement(81849..82880)
/locus_tag="CNE_1c00800"
/note="Porins form aqueous channels for the diffusion of
small hydrophillic molecules across the outer membrane.
Individual 16-strand anti-parallel beta-barrels form a
central pore, and trimerizes thru mainly hydrophobic
interactions at the interface. Trimers...; Region:
gram_neg_porins; cd00342"
/db_xref="CDD:30071"
misc_feature complement(order(81849..81851,81855..81857,81861..81863,
81957..81959,81966..81971,82497..82502,82506..82508,
82605..82613,82638..82652,82656..82661,82695..82706,
82710..82712,82716..82724,82728..82730,82746..82760,
82848..82856,82860..82862,82878..82880))
/locus_tag="CNE_1c00800"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:30071"
misc_feature complement(order(82506..82508,82566..82568,82656..82658,
82773..82775,82863..82865))
/locus_tag="CNE_1c00800"
/note="eyelet of channel; other site"
/db_xref="CDD:30071"
gene complement(83315..83569)
/gene="minE"
/locus_tag="CNE_1c00810"
/db_xref="GeneID:10916472"
CDS complement(83315..83569)
/gene="minE"
/locus_tag="CNE_1c00810"
/codon_start=1
/transl_table=11
/product="cell division topological specificity factor
MinE"
/protein_id="YP_004683931.1"
/db_xref="GI:339324238"
/db_xref="GeneID:10916472"
/translation="MSILSFLLGEKKKSASVAKERLQIILAHERTGHSAPADYLPALQ
RELVAVISKYVKIGDQDLRVSLERQDNLEVLEVKIEIPQN"
misc_feature complement(83321..83569)
/gene="minE"
/locus_tag="CNE_1c00810"
/note="cell division topological specificity factor MinE;
Provisional; Region: PRK13989"
/db_xref="CDD:184442"
gene complement(83591..84406)
/gene="minD"
/locus_tag="CNE_1c00820"
/db_xref="GeneID:10916473"
CDS complement(83591..84406)
/gene="minD"
/locus_tag="CNE_1c00820"
/codon_start=1
/transl_table=11
/product="septum site-determining protein MinD"
/protein_id="YP_004683932.1"
/db_xref="GI:339324239"
/db_xref="GeneID:10916473"
/translation="MAKIIVVTSGKGGVGKTTTSASFAAGLALRGHKTAVIDFDVGLR
NLDLIMGCERRVVYDLINVVQGEANLRQALIKDKKCENLFILPASQTRDKDALTRDGV
EKVINGLIEMDFEFIICDSPAGIESGALMAMYFADEALIVTNPEVSSVRDSDRILGIL
ASKTKRASEGGDPIKEHLLITRYNPKRVHGGEMLSLTDIQEILRIKLIGVVPESEAVL
HASNQGTPAIHLEGSDVADAYGDVVDRFLGKDKPMRFTDYQKPGLLSRIFGNK"
misc_feature complement(83600..84346)
/gene="minD"
/locus_tag="CNE_1c00820"
/note="cell division inhibitor MinD; Provisional; Region:
PRK10818"
/db_xref="CDD:182756"
misc_feature complement(83690..84346)
/gene="minD"
/locus_tag="CNE_1c00820"
/note="Bacterial cell division requires the formation of a
septum at mid-cell. The site is determined by the min
operon products MinC, MinD and MinE. MinC is a nonspecific
inhibitor of the septum protein FtsZ. MinE is the
supressor of MinC. MinD plays a pivotal...; Region: MinD;
cd02036"
/db_xref="CDD:73299"
misc_feature complement(84287..84295)
/gene="minD"
/locus_tag="CNE_1c00820"
/note="Switch I; other site"
/db_xref="CDD:73299"
misc_feature complement(84035..84049)
/gene="minD"
/locus_tag="CNE_1c00820"
/note="Switch II; other site"
/db_xref="CDD:73299"
gene complement(84473..85456)
/gene="minC"
/locus_tag="CNE_1c00830"
/db_xref="GeneID:10916474"
CDS complement(84473..85456)
/gene="minC"
/locus_tag="CNE_1c00830"
/codon_start=1
/transl_table=11
/product="septum site-determining protein MinC"
/protein_id="YP_004683933.1"
/db_xref="GI:339324240"
/db_xref="GeneID:10916474"
/translation="MRVAPRGKPRWPHLPGATVCRARAYGTHAPPAVHIDPIVTVRDR
YDVRMWHFHGHPAMSQKKSPRFELRSGNVDALLLALQTADMAALRDDLLSRFEATPDF
FSNDVIALDLRALEDDSEVALGTVIETLATLKARAIGVVARPGQREWAERFGLPLLDS
QARRGSGADRATDRAAEARAAAAAEQAAAEQVAREESIRAAAQATTDAAVAAAIRQTQ
TMLIDKPLRSGQQVYAQGDVVILDVVSYGAEVIAEGNIHIYAPLRGRALAGVKGNTGA
RIFSTCMEPELISIAGIYRTAEQTLPADVLGKTAQVRLADEKLILEALRLK"
misc_feature complement(84476..85285)
/gene="minC"
/locus_tag="CNE_1c00830"
/note="septum formation inhibitor; Reviewed; Region:
PRK01973"
/db_xref="CDD:179357"
misc_feature complement(84983..85258)
/gene="minC"
/locus_tag="CNE_1c00830"
/note="Septum formation inhibitor MinC, N-terminal domain;
Region: MinC_N; pfam05209"
/db_xref="CDD:203206"
misc_feature complement(84485..84796)
/gene="minC"
/locus_tag="CNE_1c00830"
/note="Septum formation inhibitor MinC, C-terminal domain;
Region: MinC_C; pfam03775"
/db_xref="CDD:146423"
gene 85517..86488
/gene="corA1"
/locus_tag="CNE_1c00840"
/db_xref="GeneID:10916475"
CDS 85517..86488
/gene="corA1"
/locus_tag="CNE_1c00840"
/codon_start=1
/transl_table=11
/product="Mg2+ and Co2+ transporter CorA"
/protein_id="YP_004683934.1"
/db_xref="GI:339324241"
/db_xref="GeneID:10916475"
/translation="MGAIVNCVAYRQGKRLSTVGMAEIRTVLDVPGTFVWLGLHEPDL
ALLRQAQQAFGLHDLAVEDALDAHQRPKLESYGDSVFVVLNTAQLVEDEVVVGETHLF
VGPNYVVSVRHGVSSTYAPVRERCEQDPHGLANGPGYVLYALMDFIVDHYMPIVTRLE
DTFEALEEGIFRDEFDRKAIERLYQIKRQVLRLRNAVSPVEDMCGQLIRLHEDLVPKE
LRAYFRDIEDHASRLVRTLDVVREMLTTAVQVNLALVTVGQNEVVKRLAGWGAILAIP
TVIFSLYGMNFDFMPELKVPFAYPAVIGVTAVACGGLWRRLHRAGWI"
misc_feature 85535..86485
/gene="corA1"
/locus_tag="CNE_1c00840"
/note="Mg2+ and Co2+ transporters [Inorganic ion transport
and metabolism]; Region: CorA; COG0598"
/db_xref="CDD:30943"
misc_feature <86174..86485
/gene="corA1"
/locus_tag="CNE_1c00840"
/note="magnesium/nickel/cobalt transporter CorA;
Provisional; Region: PRK11085; cl00459"
/db_xref="CDD:200659"
gene 86643..87347
/locus_tag="CNE_1c00850"
/db_xref="GeneID:10916476"
CDS 86643..87347
/locus_tag="CNE_1c00850"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683935.1"
/db_xref="GI:339324242"
/db_xref="GeneID:10916476"
/translation="MSIARPPIAALLAGATATWLLCMQPAASAPQPPAPAQAQTRDAV
TAYEAGNFDQALRGFADAARQGNRLAQFNYAMMLLRGEGTAARPQEALVWLKKAADSQ
MTHAQYTWGDLYERGELVPKSLEEANRWYALAAQGGHVQAQMALATNYFTGRGVPRDY
GQAFTWYSRAASAGDGGAQYIVGSFYEHGEPGVVDRDLEQAKIWYARSAAHGDPGALA
KLRSLLEESVRGRAAR"
misc_feature <86787..87311
/locus_tag="CNE_1c00850"
/note="FOG: TPR repeat, SEL1 subfamily [General function
prediction only]; Region: COG0790"
/db_xref="CDD:31133"
misc_feature 86850..86942
/locus_tag="CNE_1c00850"
/note="Sel1 repeat; Region: Sel1; cl02723"
/db_xref="CDD:207711"
misc_feature 86958..87059
/locus_tag="CNE_1c00850"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 87060..87167
/locus_tag="CNE_1c00850"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
misc_feature 87174..87281
/locus_tag="CNE_1c00850"
/note="Sel1-like repeats; Region: SEL1; smart00671"
/db_xref="CDD:197826"
gene complement(87399..88229)
/locus_tag="CNE_1c00860"
/db_xref="GeneID:10916477"
CDS complement(87399..88229)
/locus_tag="CNE_1c00860"
/codon_start=1
/transl_table=11
/product="MerR family transcriptional regulator"
/protein_id="YP_004683936.1"
/db_xref="GI:339324243"
/db_xref="GeneID:10916477"
/translation="MTLIRRRHPSSPTSQASDTTPPAPEYTIDELARVAGTTVRNVRS
YQDRGLIDPPLRRGRVGIYTQAHLGRLKLIHHLLARGYTLANITELLKAIVEGHDLRS
ILGLETAINSPWTNETPRHYSYLALARLFGRAISRPALAKAISLGLLEPDGLGYLARS
PRALAAGAEIAQAGFALEDVLEIIAQSRGHFQAVSDHIVATVVRELDRFGVGKLPPPQ
DVPRLVEILWRIRPLALVMAETEMMRALEISANKYLGDRVAAIIEHLHDEEGGGGGHR
"
misc_feature complement(87492..88157)
/locus_tag="CNE_1c00860"
/note="Helix-Turn-Helix DNA binding domain of putative
transcription regulators from the MerR superfamily;
Region: HTH_MerR-like_sg2; cd04778"
/db_xref="CDD:133405"
misc_feature complement(87948..88154)
/locus_tag="CNE_1c00860"
/note="MerR HTH family regulatory protein; Region: MerR_1;
pfam13411"
/db_xref="CDD:205589"
misc_feature complement(order(88047..88055,88101..88103,88143..88151))
/locus_tag="CNE_1c00860"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133405"
misc_feature complement(order(87843..87848,87855..87857,87867..87869,
87885..87887,87897..87899,87960..87962,87987..87992,
88002..88004,88011..88013))
/locus_tag="CNE_1c00860"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:133405"
gene 88328..89272
/locus_tag="CNE_1c00870"
/db_xref="GeneID:10916478"
CDS 88328..89272
/locus_tag="CNE_1c00870"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_004683937.1"
/db_xref="GI:339324244"
/db_xref="GeneID:10916478"
/translation="MHIRWLEDFVCLAQAGSLARAAELRNVTPPAFGRRMQALEVWAG
APLIDRSAFPVRLTAEGRQFLEAAQSALRTLDETRLALRAAHRADASTVTIATGKTLA
RSMVPAWLAGLREALRHDPAAAGFRTRLSTFPMHDALAMFSEGDADFLLCYSPPDLPV
MLDDARYQFHLAGVERLVCVSAADARGAPLHRLATGKAAAKPVPMIAYAETLTLGRMV
NQEIARRKLAPRLDVIAVSDFAESVHEMVRQRMGLAWLPARLIADDLHAGRLVRAIGG
VRSDDGGDLALDIRLYRPRAPMRPLAEAFWQAAVRAPR"
misc_feature 88334..88513
/locus_tag="CNE_1c00870"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 88337..89248
/locus_tag="CNE_1c00870"
/note="cell density-dependent motility repressor;
Provisional; Region: PRK10082"
/db_xref="CDD:182228"
misc_feature 88601..89254
/locus_tag="CNE_1c00870"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature order(88646..88651,88655..88660,88667..88669,88688..88690,
88694..88696,88706..88723,89027..89044,89060..89065,
89069..89074)
/locus_tag="CNE_1c00870"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 89395..90363
/locus_tag="CNE_1c00880"
/db_xref="GeneID:10916479"
CDS 89395..90363
/locus_tag="CNE_1c00880"
/codon_start=1
/transl_table=11
/product="extra-cytoplasmic solute receptor"
/protein_id="YP_004683938.1"
/db_xref="GI:339324245"
/db_xref="GeneID:10916479"
/translation="MKTILRAAAAALCLAASAGAVASAWPAKPITLVVGYTAGGSVDL
VARTIAPELGKRLGQSVVIENLGGAGGTIGAAKVVKAEADGYTLLMGSGSEVSIARLT
NPAVRYDGEKDLAPVTFVGTQPMVLVGKPGLAARNAAELIALAKAQPGKLAYASSGVG
TPLNLAGELIKQQGKVNITHVPYKGASAMATDLLGGQIDLAVMVLSSALPHIQAGRVQ
AYGVTNAKRSPVAPNVPALAETPALKGVDMGVWFGLMGPAKLPQAVVERLNTEMQAVL
AMPDVKKKLAEAGVEVAPANPAQFGSFIKRETGRYRTIVQTAGIHE"
misc_feature 89476..90354
/locus_tag="CNE_1c00880"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3181"
/db_xref="CDD:32994"
misc_feature 89527..90354
/locus_tag="CNE_1c00880"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene 90474..91448
/locus_tag="CNE_1c00890"
/db_xref="GeneID:10916480"
CDS 90474..91448
/locus_tag="CNE_1c00890"
/codon_start=1
/transl_table=11
/product="succinylglutamate desuccinylase"
/protein_id="YP_004683939.1"
/db_xref="GI:339324246"
/db_xref="GeneID:10916480"
/translation="MTQPTAPIDAYPVDVAFPDIRAYAAGNTRIPYLFTFDSGQPGPH
VMVNALTHGNEVCGAIAVKALLDHGLRPRRGRLTLAFANVDAYHRFDAARPDASRFVD
QDFNRVWTARVLDDASLDSSELRRARAMRPVIDTVDLLLDLHSMHEKSRPLIVSGPLD
KGIALARALGAPADVIVDEGHPEGRRMRDYDGFGDAASARNALLIECGQHWEPAAVTV
AQDSTARFLLHAGVIDASDLPAGWLQPLPATQRVVRVTEPVVATSMDFRFAGPYTGLE
TFTEAGTVIGWRDGEPVVTPYPDCVLVMPSLRQLRPGVTVVRLGRLER"
misc_feature 90600..91430
/locus_tag="CNE_1c00890"
/note="Peptidase M14 Succinylglutamate desuccinylase
(ASTE)/aspartoacylase (ASPA)-like; uncharacterized
subgroup; Region: M14_ASTE_ASPA_like_7; cd06910"
/db_xref="CDD:199877"
misc_feature order(90627..90629,90636..90638,90768..90770,90789..90794,
90903..90908,90933..90935,91041..91043,91053..91055,
91089..91091,91389..91391)
/locus_tag="CNE_1c00890"
/note="putative active site [active]"
/db_xref="CDD:199877"
misc_feature order(90627..90629,90636..90638,90903..90905)
/locus_tag="CNE_1c00890"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:199877"
gene complement(91540..92082)
/locus_tag="CNE_1c00900"
/db_xref="GeneID:10916481"
CDS complement(91540..92082)
/locus_tag="CNE_1c00900"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683940.1"
/db_xref="GI:339324247"
/db_xref="GeneID:10916481"
/translation="MYKTLLAAGLGLLITACSTYQAVTPVDRPDRTDPLVAFQVPAGG
GPLGNYGANGTLLCVVVNPVTGNDFVESFLSSLRRRNFEVKVLQAQTSIAACPVVALY
TARSAWYWTAYLNSADITVFRNGDRVGKAIYNANRSAGGLNLSNFVQPSSKLDELVEQ
LFPGMLPPPPPPAGTAAPAA"
gene complement(92222..92425)
/locus_tag="CNE_1c00910"
/db_xref="GeneID:10916482"
CDS complement(92222..92425)
/locus_tag="CNE_1c00910"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683941.1"
/db_xref="GI:339324248"
/db_xref="GeneID:10916482"
/translation="MQSVLSVLAILIMVATIVGVVSPAWLSQTLFGGRPVTRLQVVVI
GVCLAGLCLVLVGRLAQGGGAGG"
gene complement(92457..93026)
/locus_tag="CNE_1c00920"
/db_xref="GeneID:10916483"
CDS complement(92457..93026)
/locus_tag="CNE_1c00920"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683942.1"
/db_xref="GI:339324249"
/db_xref="GeneID:10916483"
/translation="MLNRTQQILIAIVAVAVLGMLWFAGNDRRDDVGGAAPEAQAEAS
AVPASVVRGVPRDGTLDPISIDPERPADRLPQLQADTLLNDYRGNPKEADTRYLGQYL
IVEGVASGIRREGNQVFVDIRTNDPGVNVRALLLQRQICGPAGRVCEVEARATMVRRG
QKVALECNGAGLADGAPLLRDCLLRGGAN"
misc_feature complement(92478..93026)
/locus_tag="CNE_1c00920"
/note="tRNA_anti-like; Region: tRNA_anti-like; pfam12869"
/db_xref="CDD:205117"
gene complement(93068..94312)
/gene="agt"
/locus_tag="CNE_1c00930"
/db_xref="GeneID:10916484"
CDS complement(93068..94312)
/gene="agt"
/locus_tag="CNE_1c00930"
/EC_number="2.4.1.173"
/codon_start=1
/transl_table=11
/product="sterol 3-beta-glucosyltransferase Agt"
/protein_id="YP_004683943.1"
/db_xref="GI:339324250"
/db_xref="GeneID:10916484"
/translation="MRLTLITFGTQGDCRPMVALGLGLRAAGHDVLMLGERSAATLAA
EHGLAFAPMAGDIQQTLAPGGALHKLMTEGGNVAEATRAFARIAEDNTEAWMAQLAEA
ARAADGIVFSGLTAYVALSVGEQLGKPVIGAGMFPISPTRAFPSALLPPFRMPGWANR
ASHHVINFVLWRMFRTATNAARSRLFGASARKAMWADFPTLYAISPQLVPRPHDWHDD
WLVSGAWTMPPQPDWQPDAPLRDFLAAGEAPLYIGFGSMAGFDRDKVVTALVQAVDGR
RALFYPGWSGIDVAALPSSFHVVGATPHDWLLPRVSAAIHHGGAGTTHAAVAAGAPSI
VLPFAGDQFFWAGRLAALGVAPRYVAGHKIDAPRLASMIAFAEQSATRERAATLGRAM
AAERGVDHAVAAIERFCGRQGA"
misc_feature complement(93071..94312)
/gene="agt"
/locus_tag="CNE_1c00930"
/note="Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms]; Region:
COG1819"
/db_xref="CDD:32004"
misc_feature complement(93089..94312)
/gene="agt"
/locus_tag="CNE_1c00930"
/note="This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the...; Region:
GT1_Gtf_like; cd03784"
/db_xref="CDD:99960"
misc_feature complement(order(93095..93097,93104..93109,93992..93994,
94232..94234,94310..94312))
/gene="agt"
/locus_tag="CNE_1c00930"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99960"
misc_feature complement(order(93338..93340,93347..93352,93356..93358,
93362..93364,93545..93547,93716..93718,93788..93790,
93800..93805,93812..93814,94268..94270,94274..94279))
/gene="agt"
/locus_tag="CNE_1c00930"
/note="active site"
/db_xref="CDD:99960"
misc_feature complement(order(93347..93352,93356..93358,93362..93364,
93545..93547,94277..94279))
/gene="agt"
/locus_tag="CNE_1c00930"
/note="TDP-binding site; other site"
/db_xref="CDD:99960"
misc_feature complement(94274..94276)
/gene="agt"
/locus_tag="CNE_1c00930"
/note="acceptor substrate-binding pocket; other site"
/db_xref="CDD:99960"
gene complement(94420..95847)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/db_xref="GeneID:10916485"
CDS complement(94420..95847)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/EC_number="3.6.-.-"
/codon_start=1
/transl_table=11
/product="tRNA modification GTPase MnmE"
/protein_id="YP_004683944.1"
/db_xref="GI:339324251"
/db_xref="GeneID:10916485"
/translation="MTAPQVPIAAIATAPGRGGIGVVRVSGPNVGPVMRAVCGQALKP
RHATYLPFLDGHGKVIDHGLALYFPAPNSYTGEEVLELQGHGGPVVMQMLLTRCLQAG
DGIGLRLAEPGEFTRRAFLNDKLDLAQAEAVADLIEASTEAAARSAARSMEGEFSNAI
RQLVDKVIHLRMLVEATLDFPEEEIDFLEQSDARGQLATIRTELGGVLAQARQGALLR
EGLSVVLAGQPNVGKSSLLNALAGAELAIVTPIAGTTRDRVRETIQIDGIPLHIIDTA
GLREHAADEVERIGIERTWDAIRRADIVLHLVDATDYLRHGLSETDDAIDDQLSGQLP
PGSPIVRIVNKIDKAPAVGDVVFGGNRPHVVAANGPNPTEIWISARTGAGIELLRREL
LRLVGWQSGNEGNFLARERHLTALRNAQSHLDIAAEQAEHQAQALDLFAEELRLAQDC
LNSITGEFTSDDLLGTIFTRFCIGK"
misc_feature complement(94423..95829)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="tRNA modification GTPase TrmE; Reviewed; Region:
trmE; PRK05291"
/db_xref="CDD:179996"
misc_feature complement(95476..95829)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="GTP-binding protein TrmE N-terminus; Region:
TrmE_N; pfam10396"
/db_xref="CDD:204472"
misc_feature complement(94693..95196)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="trmE is a tRNA modification GTPase; Region: trmE;
cd04164"
/db_xref="CDD:206727"
misc_feature complement(95146..95169)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="G1 box; other site"
/db_xref="CDD:206727"
misc_feature complement(order(94708..94716,94807..94809,94813..94818,
95143..95154,95158..95160))
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206727"
misc_feature complement(95074..95124)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="Switch I region; other site"
/db_xref="CDD:206727"
misc_feature complement(95083..95085)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="G2 box; other site"
/db_xref="CDD:206727"
misc_feature complement(order(94948..94992,94996..95001,95005..95031))
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="Switch II region; other site"
/db_xref="CDD:206727"
misc_feature complement(95017..95028)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="G3 box; other site"
/db_xref="CDD:206727"
misc_feature complement(94807..94818)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="G4 box; other site"
/db_xref="CDD:206727"
misc_feature complement(94708..94716)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="G5 box; other site"
/db_xref="CDD:206727"
misc_feature complement(94432..94653)
/gene="mnmE"
/locus_tag="CNE_1c00940"
/note="Catalytic cysteine-containing C-terminus of GTPase,
MnmE; Region: GTPase_Cys_C; pfam12631"
/db_xref="CDD:204989"
gene complement(95920..96906)
/locus_tag="CNE_1c00950"
/db_xref="GeneID:10916486"
CDS complement(95920..96906)
/locus_tag="CNE_1c00950"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683945.1"
/db_xref="GI:339324252"
/db_xref="GeneID:10916486"
/translation="MSGHCITGMCALQREGTGLSTIHAPFTPRRSGPACCRLHWKHPR
PACAPERMQPAMIADAHPPTLHRKTRPAAAFAALTQASLARMEASLAQLLHRDEAEDL
HALRVAVRHARAVLWALGPSLPRQERDRWKHDLRMLARATSDVRDWDVFLAETIAPAR
KLEPDDTVLSAIADTARERRDTARQTMLSALAGYRDWPLPALHRDLAHLDHLAARARS
DGGRLGPLARKRVRRGRKRLRALAKAARRGNPRAVHELRIAGKRLRYVIEAFAPVLPS
RYSKDLHRKLVKRQAKLGRFVDGIVARRLLADCLQAQAMPDEAPPQPLPGAS"
misc_feature complement(95965..96654)
/locus_tag="CNE_1c00950"
/note="The CHAD domain is an alpha-helical domain
functionally associated with some members of the adenylate
cyclase family; Region: CHAD; smart00880"
/db_xref="CDD:197948"
gene 96916..97353
/gene="paaI1"
/locus_tag="CNE_1c00960"
/db_xref="GeneID:10916487"
CDS 96916..97353
/gene="paaI1"
/locus_tag="CNE_1c00960"
/codon_start=1
/transl_table=11
/product="phenylacetic acid degradation protein PaaI"
/protein_id="YP_004683946.1"
/db_xref="GI:339324253"
/db_xref="GeneID:10916487"
/translation="MTTEQERLLLRDTIEAGFRQTAFVNDVGISLADCGPGWCESTLA
ITPRHLQHGGIVHAGVQATMADHTAGAAASTILEAGQHVVTAEFKINLLRAVRSERLR
CRADVLKSGRAIIVVEADVFADVHGESVLVSRLNATMSVLDLA"
misc_feature 96997..97338
/gene="paaI1"
/locus_tag="CNE_1c00960"
/note="PaaI_thioesterase is a tetrameric acyl-CoA
thioesterase with a hot dog fold and one of several
proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI exist
in archaea and eukaryotes, their function has not...;
Region: PaaI_thioesterase; cd03443"
/db_xref="CDD:48038"
misc_feature order(97081..97083,97168..97170,97189..97200)
/gene="paaI1"
/locus_tag="CNE_1c00960"
/note="CoenzymeA binding site [chemical binding]; other
site"
/db_xref="CDD:48038"
misc_feature order(97084..97086,97090..97092,97099..97101,97171..97185,
97189..97191)
/gene="paaI1"
/locus_tag="CNE_1c00960"
/note="subunit interaction site [polypeptide binding];
other site"
/db_xref="CDD:48038"
misc_feature order(97087..97089,97111..97116,97123..97128,97168..97170)
/gene="paaI1"
/locus_tag="CNE_1c00960"
/note="PHB binding site; other site"
/db_xref="CDD:48038"
gene 97385..97771
/locus_tag="CNE_1c00970"
/db_xref="GeneID:10916488"
CDS 97385..97771
/locus_tag="CNE_1c00970"
/codon_start=1
/transl_table=11
/product="lactoylglutathione lyase"
/protein_id="YP_004683947.1"
/db_xref="GI:339324254"
/db_xref="GeneID:10916488"
/translation="MIDHTGVSVSDYGKSRAFYQAALGAIGYVLDKEFSASVTGSTDV
AGFGPPGQPDFWIHRGTPNQPPLHVAFRVDSRETVDAFYRAALAAGGRDNGAPGIRAH
YHSDYYGAFVLDPDGHNIEAVCHKPA"
misc_feature 97388..97756
/locus_tag="CNE_1c00970"
/note="This conserved domain belongs to a superfamily
including the bleomycin resistance protein, glyoxalase I,
and type I ring-cleaving dioxygenases; Region:
Glo_EDI_BRP_like_19; cd07262"
/db_xref="CDD:176683"
misc_feature 97388..97747
/locus_tag="CNE_1c00970"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
gene complement(97776..98546)
/gene="tam"
/locus_tag="CNE_1c00980"
/db_xref="GeneID:10916489"
CDS complement(97776..98546)
/gene="tam"
/locus_tag="CNE_1c00980"
/EC_number="2.1.1.144"
/codon_start=1
/transl_table=11
/product="trans-aconitate 2-methyltransferase Tam"
/protein_id="YP_004683948.1"
/db_xref="GI:339324255"
/db_xref="GeneID:10916489"
/translation="MSWSAHQYVAFEDERTRPVRDLVAAIPNQTARSAVDIGCGPGNS
TEVLLARYAGASVTGLDSSQDMVDAARKRLPDVQFRVADIGAWDEAGPYDVILANAVL
QWLPDHASLFPALVSRLAPGGTLAVQMPDNLEEPAHRLMRQVAADGPWAEKLAGASKA
RAERAPAQWYYELLRPLCQRVDVWLTTYHHPLAGGPAAVVEWFKGSGLRPFLQPLDEA
ERAAYLARYEAEIAKAYPALPDGSVLLPFPRLFIVATR"
misc_feature complement(97779..98546)
/gene="tam"
/locus_tag="CNE_1c00980"
/note="Trans-aconitate methyltransferase [General function
prediction only]; Region: Tam; COG4106"
/db_xref="CDD:33863"
misc_feature complement(98163..98444)
/gene="tam"
/locus_tag="CNE_1c00980"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(98250..98252,98295..98303,98361..98366,
98418..98438))
/gene="tam"
/locus_tag="CNE_1c00980"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(98631..100088)
/gene="gatB"
/locus_tag="CNE_1c00990"
/db_xref="GeneID:10916490"
CDS complement(98631..100088)
/gene="gatB"
/locus_tag="CNE_1c00990"
/EC_number="6.3.5.-"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
B"
/protein_id="YP_004683949.1"
/db_xref="GI:339324256"
/db_xref="GeneID:10916490"
/translation="MQWEVVIGLETHAQLSTASKIFSGTSTAFGAEANTQASPVDLAL
PGVLPVLNKGAVERAIQFGLAIGATIAPRSIFARKNYFYPDLPKGYQISQYEIPVVQG
GTISIQVEGKKGEFYEKTVNLTRAHLEEDAGKSLHEDFAGMTGIDLNRAGTPLLEIVT
EPDMRSAAEAVAYAKTLHSLVVWLGICDGNMQEGSFRCDANVSVRPLGQKEFGTRREI
KNLNSFRFLQQAIEYEVQWQIAEIEDGRKIQQATVLFDPDTGETRAMRTKEDAHDYRY
FPDPDLMPLEIDAGWVDRVRGELPELPAAMQARFVSQYGLSAYDATTLTATKAFAAYY
EAVVADAGAANAKPAANWLMGDVASQLNREGIAIDAAPVTPAQLAKLLTRIADGTVSN
NTAKKDVFPAMWAGEHGGDADAIIAAKGLKQMSDSGELEKIIDDVLAANAKSVEEFRA
GKEKAFNALVGQAMKATKGKANPAQVNELLKKKLG"
misc_feature complement(98637..100088)
/gene="gatB"
/locus_tag="CNE_1c00990"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit B;
Validated; Region: gatB; PRK05477"
/db_xref="CDD:180111"
misc_feature complement(99204..100079)
/gene="gatB"
/locus_tag="CNE_1c00990"
/note="GatB/GatE catalytic domain; Region: GatB_N;
pfam02934"
/db_xref="CDD:202476"
misc_feature complement(98637..99038)
/gene="gatB"
/locus_tag="CNE_1c00990"
/note="GatB domain; Region: GatB_Yqey; smart00845"
/db_xref="CDD:197913"
gene complement(100179..101270)
/locus_tag="CNE_1c01000"
/db_xref="GeneID:10916491"
CDS complement(100179..101270)
/locus_tag="CNE_1c01000"
/EC_number="3.1.1.-"
/codon_start=1
/transl_table=11
/product="dienelactone hydrolase"
/protein_id="YP_004683950.1"
/db_xref="GI:339324257"
/db_xref="GeneID:10916491"
/translation="MTHAPATPQRSLCAARPAVAVLRAVVALGLGAWLAGASAHTPDL
PAPALAQPAPLTPAGVLAPNAVSRAAPGSAATASVPAQRVELRGDAATPALTAYWFLP
REGTSQRALPVVVALHGCGGLLSARPSRASAAGAAGTDKADVSGMLQQRYREYAHWLT
ERGYAVLMPDSFSARGRPHGICSDPIDTRGIDDRTRRADALAALRWVAQQPAVDTARI
VLLGWSNGAQAVLATVDASRPWPAGTPQVERAVAFYPGCKRAVQQHNYRLRAPMLLMI
GGADDWTPATRCAMLQSAVLARQPGARFRLEIYPGAYHGFDGTSELHMRGDVPAGMRK
TQGVTVGGDAVARVAALAQLDSWLASPDP"
misc_feature complement(100194..100988)
/locus_tag="CNE_1c01000"
/note="Dienelactone hydrolase and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism]; Region: COG0412"
/db_xref="CDD:30761"
misc_feature complement(100323..>100655)
/locus_tag="CNE_1c01000"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene complement(101288..101773)
/locus_tag="CNE_1c01010"
/db_xref="GeneID:10916492"
CDS complement(101288..101773)
/locus_tag="CNE_1c01010"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683951.1"
/db_xref="GI:339324258"
/db_xref="GeneID:10916492"
/translation="MNMTARSSLTLRLMAAAALAAAVAGCIPLPGGLGRPAPPAPIAS
RDIDLAGDCRRTEEDGFREDAQLRVSNNSVQQLSWKLWVGKRGSCSFNLADFRQVQKK
PHIELRANDGSGCKLMVWQDPRRVTLAHANCQQRCTPGIYEEAWPVMFEPGSGACART
R"
gene complement(101770..103275)
/gene="gatA1"
/locus_tag="CNE_1c01020"
/db_xref="GeneID:10916493"
CDS complement(101770..103275)
/gene="gatA1"
/locus_tag="CNE_1c01020"
/EC_number="6.3.5.-"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA(Gln) amidotransferase subunit A"
/protein_id="YP_004683952.1"
/db_xref="GI:339324259"
/db_xref="GeneID:10916493"
/translation="MPFSADSVTSLRQLADALAARSVSAEELAREYLARIEQAAALNA
FIHVDAERTLAQARAADERRARGEAAPLTGVPIAHKDVFVTRGWRATAGSKMLGNYES
PFDATVVERMGAAGMVTLGKTNMDEFAMGSSNENSHFGPVRNPWDTSRVPGGSSGGSA
AAVAAGLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQAGPMA
HSAEDCALLLNAMAGFDPRDSTSITPAQGGVDEDYTRLLGQPLAGATAERPLAGLRIG
LPKEYFGKGLSADVEQAVRAALAEYEKLGATLVEVTLPKTELSIPVYYVIAPAEASSN
LSRFDGVRYGHRAAEYRDLLDMYKKSRAEGFGAEVKRRIMVGTYVLSHGYYDAYYLQA
QKIRRIIADDFQRAFAQCDVIMGPVAPTVAWKLGEKTSDPVQMYLADIFTLSTSLAGL
PGMSVPCGFGEAGMPVGLQLIGNYFDEARLLQTAHAFQQATDWHLRRPGKA"
misc_feature complement(101779..103248)
/gene="gatA1"
/locus_tag="CNE_1c01020"
/note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure and
biogenesis]; Region: GatA; COG0154"
/db_xref="CDD:30503"
misc_feature complement(101812..103224)
/gene="gatA1"
/locus_tag="CNE_1c01020"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed; Region: gatA; PRK00012"
/db_xref="CDD:178793"
gene complement(103367..103726)
/gene="gatC1"
/locus_tag="CNE_1c01030"
/db_xref="GeneID:10916494"
CDS complement(103367..103726)
/gene="gatC1"
/locus_tag="CNE_1c01030"
/EC_number="6.3.5.-"
/codon_start=1
/transl_table=11
/product="aspartyl/glutamyl-tRNA amidotransferase subunit
C"
/protein_id="YP_004683953.1"
/db_xref="GI:339324260"
/db_xref="GeneID:10916494"
/translation="MSQPPAQPAPPASEHPNHHAMALALSDVKRIAHLARIETSDDEA
AQTLAQLNNFFSLVEQMQAVDTTGIEPLAHPLSAVRDMVQRLREDVVTESDRRADYQR
PAPATEDGLYLVPKVIE"
misc_feature complement(103370..103666)
/gene="gatC1"
/locus_tag="CNE_1c01030"
/note="aspartyl/glutamyl-tRNA amidotransferase subunit C;
Reviewed; Region: gatC; PRK00034"
/db_xref="CDD:178810"
gene 104269..105312
/gene="mreB"
/locus_tag="CNE_1c01040"
/db_xref="GeneID:10916495"
CDS 104269..105312
/gene="mreB"
/locus_tag="CNE_1c01040"
/codon_start=1
/transl_table=11
/product="Rod shape-determining protein MreB"
/protein_id="YP_004683954.1"
/db_xref="GI:339324261"
/db_xref="GeneID:10916495"
/translation="MFGFLRSYFSNDLAIDLGTANTLIYMRDKGIVLDEPSVVAIRQE
GGPNAKKTITAVGKEAKQMLGKVPGNIEAIRPMKDGVIADFTVTEQMLKQFIKMVHDS
KLLRPSPRIIICVPCGSTQVERRAIRESALGAGASQVYLIEEPMSAAIGAGLPVSEPS
GSMVVDIGGGTTEVGIISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEQTAEA
IKKEIGSAFPGSEVREMEVKGRNLSEGIPRAFTVSSNEILEALTDPLNQIVSAVKIAL
EQTPPELGADIAERGMMLTGGGALLRDLDRLLAEETGLPVLVAEDPLTCVVRGSGMAL
ERMDKLGSIFSYE"
misc_feature 104284..105306
/gene="mreB"
/locus_tag="CNE_1c01040"
/note="rod shape-determining protein MreB; Provisional;
Region: PRK13927"
/db_xref="CDD:184401"
misc_feature 104305..105282
/gene="mreB"
/locus_tag="CNE_1c01040"
/note="MreB and similar proteins; Region: MreB_like;
cd10225"
/db_xref="CDD:212668"
misc_feature order(104314..104316,104320..104331,104506..104508,
104698..104700,104764..104766,104770..104781,
104842..104847,104917..104919,104926..104931,
105154..105162,105166..105171,105235..105237,
105244..105246)
/gene="mreB"
/locus_tag="CNE_1c01040"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212668"
misc_feature order(104314..104316,104764..104766)
/gene="mreB"
/locus_tag="CNE_1c01040"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:212668"
misc_feature order(104392..104394,104455..104457,104479..104481,
104743..104745,104749..104751,104809..104811,
104905..104907,104911..104913,104980..104982,
105004..105006,105013..105015,105103..105105,
105112..105114,105208..105210,105280..105282)
/gene="mreB"
/locus_tag="CNE_1c01040"
/note="putative protofilament interaction site
[polypeptide binding]; other site"
/db_xref="CDD:212668"
misc_feature order(104725..104730,104752..104754,105130..105138,
105211..105213,105217..105219,105226..105228)
/gene="mreB"
/locus_tag="CNE_1c01040"
/note="RodZ interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212668"
gene 105509..106474
/gene="mreC"
/locus_tag="CNE_1c01050"
/db_xref="GeneID:10916496"
CDS 105509..106474
/gene="mreC"
/locus_tag="CNE_1c01050"
/codon_start=1
/transl_table=11
/product="Rod shape-determining protein MreC"
/protein_id="YP_004683955.1"
/db_xref="GI:339324262"
/db_xref="GeneID:10916496"
/translation="MDYSPPPLFKQGTSAVARLVLYVTIALALLVVDARFDALSVGRQ
VAATVLMPVERLVLTPRDALRTMFDYAQSSAMLATENRELRQNAVQQAQAAVRQAQLE
SENNQLRKLLGLAQQSATPVTAAEILYDARDPYSQRIVIDKGSQHGLRAGYPVIDERG
VVGQVTRVSPFQSEVTLLTDKDQAIPVQVVRNGLRSVAFGGARAGQLDLRFMAAAADL
QQGDLLVTSGLDGTYPPGLPVAKIIHIERKADTAFSRVYCEPVAGVRAHRQLLVVRYD
AAIPARETVEAKPEAPVRGAKSAAARAAADSAAAAKAAPAKEAPR"
misc_feature 105524..106336
/gene="mreC"
/locus_tag="CNE_1c01050"
/note="rod shape-determining protein MreC; Provisional;
Region: PRK13922"
/db_xref="CDD:184397"
misc_feature 105884..106327
/gene="mreC"
/locus_tag="CNE_1c01050"
/note="rod shape-determining protein MreC; Region: MreC;
pfam04085"
/db_xref="CDD:202883"
gene 106471..106983
/gene="mreD"
/locus_tag="CNE_1c01060"
/db_xref="GeneID:10916497"
CDS 106471..106983
/gene="mreD"
/locus_tag="CNE_1c01060"
/codon_start=1
/transl_table=11
/product="Rod shape-determining protein MreD"
/protein_id="YP_004683956.1"
/db_xref="GI:339324263"
/db_xref="GeneID:10916497"
/translation="MTNPQYLLRPVNPAFIAFSFVLAFLFNLMPWGTTLWVPDMVALV
LVFWNIHQPRKVGMGVAFLLGLLMDVHDARLLGEHALAYTLLAYFAITIHRRVLWFTV
YTQALHVLPLLFIVHAVPVLIRLAMGAPLPGWPLLLAPAIEALLWPLATSLLLAPQRR
SSDVDETRPI"
misc_feature 106489..>106842
/gene="mreD"
/locus_tag="CNE_1c01060"
/note="Cell shape-determining protein [Cell envelope
biogenesis, outer membrane]; Region: MreD; COG2891"
/db_xref="CDD:32716"
gene 107037..109340
/gene="mrdA"
/locus_tag="CNE_1c01070"
/db_xref="GeneID:10916498"
CDS 107037..109340
/gene="mrdA"
/locus_tag="CNE_1c01070"
/codon_start=1
/transl_table=11
/product="penicillin-binding protein MrdA"
/protein_id="YP_004683957.1"
/db_xref="GI:339324264"
/db_xref="GeneID:10916498"
/translation="MTEIRNVELEIGRFRIRVAAAALFTVICFGLLFTRFLWLQWYKH
DQYSAKAEDNRISVAPIEPNRGIIMDRNGLVLARNYSAYTLEITPSKLTDTLDNTIES
LSGLVDIQPRDRRRFKRLMEESRSFESLPIRSQLTDEEVARFSAQRFRFPGVDVRARL
FRQYPLGESASHVIGYLGRISQRDQERIEAMDEANDAEGAKYDPRKDADNYKGTNYIG
KIGLEQSYESELHGLTGFEEVEVSAGGRPIRTLSTSPATPGNNLILSLDIRLQQLAEA
LYGDRRGALVAIEPATGDILAFVSKPTYDPNLFVEGIDTNTWNELNNSPDKPLLNRPL
RGTYPPGSTYKPFMALAALTTGKRTAAWGMHDPGFFTLGNHTFRDDKPGGHGWVDMHS
SIVQSCDTYYYALARDMGVNGIHDFMKPLGFGQITGIDIEGESRGILPSTDWKRRAYR
KPEQQKWYDGETISLGIGQGYNSFTILQLAQATSVIVNNGSVMKPHLVKAVEDAVTRK
RTLTVPKESYRIPLKQADIDVIKRAMVAVTHSGTAARVFAGAAYESAGKTGTAQTYSL
GKGEKYNHHALDERKRDHSLYTAFAPADNPRIAIALIVENAGFGAAVAAPIARKVMDY
YLTGKWPAELEAIAPPEAERMAGRPPVATPSVFTTGQTASIASATVMSGGSAPASGAA
ASAVAAASGAHAAASDAIAAALDPAAIAPASAVQTLDERMLQALGHSKPKVPPASVPV
VPAKAPAPKPRVKPVAAKAASGADATR"
misc_feature 107085..108920
/gene="mrdA"
/locus_tag="CNE_1c01070"
/note="penicillin-binding protein 2; Region: pbp2_mrdA;
TIGR03423"
/db_xref="CDD:200273"
misc_feature 107217..107792
/gene="mrdA"
/locus_tag="CNE_1c01070"
/note="Penicillin-binding Protein dimerisation domain;
Region: PBP_dimer; pfam03717"
/db_xref="CDD:202738"
misc_feature 107883..108854
/gene="mrdA"
/locus_tag="CNE_1c01070"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; pfam00905"
/db_xref="CDD:144486"
gene 109352..110494
/gene="mrdB"
/locus_tag="CNE_1c01080"
/db_xref="GeneID:10916499"
CDS 109352..110494
/gene="mrdB"
/locus_tag="CNE_1c01080"
/codon_start=1
/transl_table=11
/product="Rod shape-determining protein rodA"
/protein_id="YP_004683958.1"
/db_xref="GI:339324265"
/db_xref="GeneID:10916499"
/translation="MDRRRVLSLIKTALTGFDKPLSLIVFLLFATGIVALYSAAIDMP
GRVEDQLRNILLSYVVMMVIAYLPTQTLMRVAVPIYTVGVALLIAVAMFGLIRKGARR
WLYVGMVIQPSEIMKISMPLMLAWYFQKREGVVKWFDFVVALVLLLIPVGLIAKQPDL
GTALLVMAAGVYVIYFAGLSWKLILPLLGLLVVAVTLLITFQNDMCAPGVNWPVLHDY
QQHRICTLLDPTSDPLGKGFHTIQSIIAIGSGGVEGKGWLKGTQTHLEFIPEKHTDFI
FAVYSEEFGLIGNAVLLVLYLLLIFRGLFIAANAPTLFSRLLAGSITLIFFTYAFVNM
GMVSGILPVVGVPLPLMSYGGTALVTLGAGIGILMSISRQKRLIQT"
misc_feature 109403..110479
/gene="mrdB"
/locus_tag="CNE_1c01080"
/note="rod shape-determining protein RodA; Region:
rodA_shape; TIGR02210"
/db_xref="CDD:211724"
gene 110553..111239
/locus_tag="CNE_1c01090"
/db_xref="GeneID:10916500"
CDS 110553..111239
/locus_tag="CNE_1c01090"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683959.1"
/db_xref="GI:339324266"
/db_xref="GeneID:10916500"
/translation="MNAQDVAAYLQSHPEFFEEHAELLAAVQLTSPHSHRAVSLQERQ
MEILREKNKGLELRLADLVRHGHDNDRTQQRMHAWQLRLLAEADSHALPYAVQDGLQQ
VFDVPAVALRLWDVAEQYVHMEVAQGASEDLRIFAEGLRAPYCGSNGGFEAAGLLERD
DITSLAMVTLRVPVRAGDAEAGADVRGAAFGLLVLGSPDPRRFHEGMGTAYLSQIGEV
AGAALHRLRD"
misc_feature 110553..111236
/locus_tag="CNE_1c01090"
/note="GAF domain; Region: GAF; cl15785"
/db_xref="CDD:210185"
gene 111265..112344
/gene="xerC"
/locus_tag="CNE_1c01100"
/db_xref="GeneID:10916501"
CDS 111265..112344
/gene="xerC"
/locus_tag="CNE_1c01100"
/codon_start=1
/transl_table=11
/product="tyrosine recombinase XerC"
/protein_id="YP_004683960.1"
/db_xref="GI:339324267"
/db_xref="GeneID:10916501"
/translation="MTARRPPRSVVADVAPASDTPPPAPEPLVTRYLDWLRGSRKLAE
HTLTSYSRDLRVLQGHAARYAPGVALLALQTHHIRNFAARLHGAGLVGTSIARTLSAW
RGFFQWAARHGHGVTVNPVDGVRAPRSGHALPKALSVEHAVALVAHPAGTDAQALRDH
AVYELFYSSGLRLSELVQLDLRYADADGYRSSGWLDLAGAEVTVTGKGSRQRSVPVGS
KAVEALRAWLAVRDTLLRPGALPEDAHALFLGPRGRRLSMRTVQLRLKQQALRAGVPA
DVHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTALDFQHLAKVYDKAHPR
AGRARARPAADAAADPADADEASED"
misc_feature 111340..112254
/gene="xerC"
/locus_tag="CNE_1c01100"
/note="site-specific tyrosine recombinase XerC; Reviewed;
Region: xerC; PRK00236"
/db_xref="CDD:178942"
misc_feature 111349..112248
/gene="xerC"
/locus_tag="CNE_1c01100"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:211431"
misc_feature order(111778..111783,111883..111885,112099..112107,
112210..112212)
/gene="xerC"
/locus_tag="CNE_1c01100"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29495"
misc_feature order(111778..111780,111883..111885,112105..112107,
112114..112116,112183..112185,112210..112212)
/gene="xerC"
/locus_tag="CNE_1c01100"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29495"
misc_feature order(111778..111780,112105..112107,112114..112116,
112183..112185,112210..112212)
/gene="xerC"
/locus_tag="CNE_1c01100"
/note="active site"
/db_xref="CDD:29495"
gene complement(112346..113302)
/locus_tag="CNE_1c01110"
/db_xref="GeneID:10916502"
CDS complement(112346..113302)
/locus_tag="CNE_1c01110"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_004683961.1"
/db_xref="GI:339324268"
/db_xref="GeneID:10916502"
/translation="MAWKSAWEKDLPRGWHRELPRLPALTALRAFEAAARHESFSRAA
TELFVTHGAVSHQIRALEEELGMPLFERHGKRVALTPSGRLYAERVRDALLQIADATR
ALQAGNRDKRLTISTMPSFAARWLTPRIGSFIERHPELDVELLSSNTLVNFAHEEVDI
ALRMGSGDYPGLYVERLLDDVFFPVCSPGFNGGRLPERPQDMAGLPLLRGEGDPWKPW
FEAAGLDWPEPRKGLLLEDSSLLLQAASEGQGIALIRSSLAYNDLLAGRVVRLFDVSI
ACPWLLYFVCAPGSLNLPKVQAFRGWLLPEIERFREVLAQWE"
misc_feature complement(112367..113194)
/locus_tag="CNE_1c01110"
/note="DNA-binding transcriptional activator GcvA;
Provisional; Region: PRK11139"
/db_xref="CDD:182990"
misc_feature complement(113051..113194)
/locus_tag="CNE_1c01110"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(112394..112969)
/locus_tag="CNE_1c01110"
/note="The C-terminal substrate domain of LysR-type GcdR,
TrPI, HvR and beta-lactamase regulators, and that of other
closely related homologs; contains the type 2 periplasmic
binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like;
cd08432"
/db_xref="CDD:176123"
misc_feature complement(order(112865..112885,112889..112942,
112946..112969))
/locus_tag="CNE_1c01110"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176123"
misc_feature complement(order(112529..112531,112589..112597,
112940..112942,112946..112951))
/locus_tag="CNE_1c01110"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:176123"
gene 113551..113919
/locus_tag="CNE_1c01120"
/db_xref="GeneID:10916503"
CDS 113551..113919
/locus_tag="CNE_1c01120"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683962.1"
/db_xref="GI:339324269"
/db_xref="GeneID:10916503"
/translation="MKTVLTTTVFTLNPGEVTTLSVHAAQRLHVEEARGTDVWLTREK
DSEDYWLRCGGSLLLRSGDEVVLSVDPRALHPVRLALIAEARRPALALADVPHLVYRS
LRRLVRGTEWTPNQDQVTAS"
misc_feature 113575..113769
/locus_tag="CNE_1c01120"
/note="Protein of unknown function (DUF2917); Region:
DUF2917; pfam11142"
/db_xref="CDD:151586"
gene 114091..114846
/gene="lipB"
/locus_tag="CNE_1c01130"
/db_xref="GeneID:10916504"
CDS 114091..114846
/gene="lipB"
/locus_tag="CNE_1c01130"
/EC_number="2.3.1.181"
/codon_start=1
/transl_table=11
/product="octanoyltransferase LipB"
/protein_id="YP_004683963.1"
/db_xref="GI:339324270"
/db_xref="GeneID:10916504"
/translation="MHPIQVIERGREDYQPCFDAMRAFTAARTPETPDQVWLVEHPPV
YTLGQAGDPAHLLAPDDQIPVVQIDRGGQITYHGPGQVVAYLLLDLRRRRLMVRELVH
SIEQAVLDTLAAYNLAAERKPGAPGIYLSDGPHQGAKIAALGLKIRNGCSYHGVSLNV
QMDLSPFLRINPCGYAGLETVDMASAGATFAAADANGDPLPVTAAQQPEIAQRLAAAL
CEVLAAHEARALAAEGTAAPAEAKQPGETALAS"
misc_feature 114091..114756
/gene="lipB"
/locus_tag="CNE_1c01130"
/note="lipoate-protein ligase B; Provisional; Region:
PRK14343"
/db_xref="CDD:184637"
gene 114887..115882
/gene="lipA1"
/locus_tag="CNE_1c01140"
/db_xref="GeneID:10916505"
CDS 114887..115882
/gene="lipA1"
/locus_tag="CNE_1c01140"
/EC_number="2.8.1.8"
/codon_start=1
/transl_table=11
/product="lipoyl synthase LipA"
/protein_id="YP_004683964.1"
/db_xref="GI:339324271"
/db_xref="GeneID:10916505"
/translation="MSDALIATSSEAPQSPAEQYDPTRKQKSADKTARIPIKIVPAEK
LKKPDWIRVKAATGSSRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIMGD
KCTRRCPFCDVGHGRPDPLDVNEPGNLARTIAQLKLNYVVITSVDRDDLRDGGAQHYV
DCISQTRELSPITRIEVLVPDFRGRLDKALDILQACPPDVMNHNMETVPRLYKQARPG
ADYAHSLKLLQEFKRRNPNVPTKSGLMVGLGETDEEILEVMRDMRAHDIDMLTIGQYL
APSNHHLPVLRYVHPDTFKMFEEEAYKMGFTHAAVGAMVRSSYHADQQAHQAGFA"
misc_feature 115007..115879
/gene="lipA1"
/locus_tag="CNE_1c01140"
/note="lipoyl synthase; Provisional; Region: PRK05481"
/db_xref="CDD:180115"
misc_feature 115196..115789
/gene="lipA1"
/locus_tag="CNE_1c01140"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(115196..115198,115202..115204,115208..115210,
115214..115219,115229..115231,115322..115324,
115328..115333,115412..115420,115496..115498,
115619..115621,115706..115711)
/gene="lipA1"
/locus_tag="CNE_1c01140"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 116124..116771
/locus_tag="CNE_1c01150"
/db_xref="GeneID:10916506"
CDS 116124..116771
/locus_tag="CNE_1c01150"
/EC_number="3.5.1.54"
/codon_start=1
/transl_table=11
/product="allophanate hydrolase subunit 1"
/protein_id="YP_004683965.1"
/db_xref="GI:339324272"
/db_xref="GeneID:10916506"
/translation="MNCTVHRLAEQALLYSVAPPASLGVQRRIWAMAARAADWRGVVD
VVPGMNNLTVIFDGSADVDALERNLKLAWASGEARNATGKLVEIPVRYGGEHGPDLGD
VAAHTGLTPQEVVRRHAAGEYVVYFLGFQPGFAYMGGLAPELATPRRREPRVAVPAGS
VGIGGEQTGIYPAVLPGGWQLIGRTDAELFVADRDPPSLFAPGDTVRFVAEEVIA"
misc_feature 116133..116723
/locus_tag="CNE_1c01150"
/note="Allophanate hydrolase subunit 1; Region: AHS1;
pfam02682"
/db_xref="CDD:202348"
misc_feature 116136..116762
/locus_tag="CNE_1c01150"
/note="Allophanate hydrolase subunit 1 [Amino acid
transport and metabolism]; Region: DUR1; COG2049"
/db_xref="CDD:32232"
gene 116768..117787
/locus_tag="CNE_1c01160"
/db_xref="GeneID:10916507"
CDS 116768..117787
/locus_tag="CNE_1c01160"
/EC_number="3.5.1.54"
/codon_start=1
/transl_table=11
/product="allophanate hydrolase subunit 2"
/protein_id="YP_004683966.1"
/db_xref="GI:339324273"
/db_xref="GeneID:10916507"
/translation="MIEIIRPGALASVQDLGRTGFRRFGVGRCGAMDMLAVEVGNRLL
GNAPGCAAIEFTLGRAALRFHADMRVALAGAECGANLDGVPVWSWHAFDVHKGETLTL
PSTRGGTRVYLCVAGGIDVEPVMGSRSTDLKSGFGGLGGRALQEGDRLPAGRPGLVAE
TDWIGVQAPAWALPASIEGKATPVRMLPGPEYEDFDAASQAALWQADWTVTPNSNRMG
LRLNGPALARRAERSADLLSHGVVPGVMQVPPGGQPIALMADAQTTGGYPKIGVVIGA
DLWRLAQVPLGAPVRFVQVTLAQAEAAQAELERYLRQIDQALRWQGDGMPIGARRRAH
TRVAA"
misc_feature 116858..117655
/locus_tag="CNE_1c01160"
/note="Allophanate hydrolase subunit 2; Region: AHS2;
smart00797"
/db_xref="CDD:197878"
gene 117843..118583
/gene="lamB1"
/locus_tag="CNE_1c01170"
/db_xref="GeneID:10916508"
CDS 117843..118583
/gene="lamB1"
/locus_tag="CNE_1c01170"
/codon_start=1
/transl_table=11
/product="lactam utilization protein LamB"
/protein_id="YP_004683967.1"
/db_xref="GI:339324274"
/db_xref="GeneID:10916508"
/translation="MHIDLNADLGEGCDNDEALLALISSANIACGWHAGDAATMVRTV
KWALERGVAIGAHPSYPDRENFGRTEMQRDPEHVYADVLYQIGALDAIVRAQGGELHH
VKPHGALYNQAVRDPALARAIVRAVRDVDADLVFFGLAGSQMIDIAKEAGLRVKQEVF
ADRGYNPDGTLVKRGTPGALHEDEEVALNQTLTMVREKRVRAIDGSWVPIQAETVCLH
GDGAHALAFARRIRERLGAEGIAVRAGD"
misc_feature 117843..118562
/gene="lamB1"
/locus_tag="CNE_1c01170"
/note="LamB/YcsF family protein; Provisional; Region:
PRK05406"
/db_xref="CDD:180058"
gene 118684..119412
/locus_tag="CNE_1c01180"
/db_xref="GeneID:10916509"
CDS 118684..119412
/locus_tag="CNE_1c01180"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683968.1"
/db_xref="GI:339324275"
/db_xref="GeneID:10916509"
/translation="MEQAVNLWPLVGVGVIIIGFVLRFNPMLVVVLAALATGLAAPMP
LMQIFSAIGTAFVKARNLPLIILLPLAVIGLLERHGLREHAQAWIARIASATVGRLLI
VYLGVRELTAAIGLTSLGGHPQMVRPLLAPMAEGAAENRFGHLPEPVRQRILAFCAAT
DNVGLFFGEDIFVAFGAIALMHTFLLSSNIDVEPLRIAVWGIPTAICAFLIHAVRLKR
LDRWLERELGGKAAAAAVPAKSAE"
misc_feature 118702..119358
/locus_tag="CNE_1c01180"
/note="Protein of unknown function (DUF969); Region:
DUF969; pfam06149"
/db_xref="CDD:203397"
gene 119423..120373
/locus_tag="CNE_1c01190"
/db_xref="GeneID:10916510"
CDS 119423..120373
/locus_tag="CNE_1c01190"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683969.1"
/db_xref="GI:339324276"
/db_xref="GeneID:10916510"
/translation="MIISIEYLYWLAGLVLAITALMTFADREHPRRLSTGLFWLLYAI
VFLIGDRLPPAAVGIGAVVMALIAGFGGVGHGKHHSLPEEERRASARRLGNKLFIPAL
LIPLVTVIGTMLFKNVKIAGLPLLDPKNVTFVSLGIGCLISLAVVCWLTRDTVAQGLR
ESRRLTESLGWALVLPQMLAMLGLVFADAGVGKAVAHLSTAYINMDYKLVAVAVYCVG
MALFTVIMGNGFAAFPVMTGGVGVPILVGMFGGNPAVMAAIGMFSGYCGTLMTPMAAN
FNIVPAALLELDDKNAVIRAQVPTALAILVANIALLYFLM"
misc_feature 119435..120370
/locus_tag="CNE_1c01190"
/note="Protein of unknown function (DUF979); Region:
DUF979; pfam06166"
/db_xref="CDD:191464"
gene 120389..121039
/gene="pcp"
/locus_tag="CNE_1c01200"
/db_xref="GeneID:10916511"
CDS 120389..121039
/gene="pcp"
/locus_tag="CNE_1c01200"
/EC_number="3.4.19.3"
/codon_start=1
/transl_table=11
/product="pyrrolidone-carboxylate peptidase Pcp"
/protein_id="YP_004683970.1"
/db_xref="GI:339324277"
/db_xref="GeneID:10916511"
/translation="MRTVLLTGFEPFENEPINPSWEAVRALDGERVGDAVIVARQLPC
VFGAAIDTIGELVDVLRPALVIAVGQAGGRAEMSVERVAINVDDARIADNAGAQPIDT
AIVAGGPAAYFATLPIKAMVRDMRAAGVPASVSQTAGTFVCNHVFYGLMHRLAQQPDG
DVRGGFIHIPYLPEQAARHPGQPSLAQETLVKGLRAAVATALSTRADVREQGGQLH"
misc_feature 120392..120979
/gene="pcp"
/locus_tag="CNE_1c01200"
/note="Pyroglutamyl peptidase (PGP) type I, also known as
pyrrolidone carboxyl peptidase (pcp) type I: Enzymes
responsible for cleaving pyroglutamate (pGlu) from the
N-terminal end of specialized proteins. The N-terminal
pGlu protects these proteins from...; Region:
Peptidase_C15; cd00501"
/db_xref="CDD:29606"
misc_feature order(120413..120415,120422..120424,120518..120520,
120809..120817)
/gene="pcp"
/locus_tag="CNE_1c01200"
/note="putative substrate binding pocket [chemical
binding]; other site"
/db_xref="CDD:29606"
misc_feature order(120608..120616,120764..120766,120773..120787,
120905..120910,120914..120916,120935..120940,
120944..120946)
/gene="pcp"
/locus_tag="CNE_1c01200"
/note="AC domain interface; other site"
/db_xref="CDD:29606"
misc_feature order(120626..120628,120815..120817,120890..120892)
/gene="pcp"
/locus_tag="CNE_1c01200"
/note="catalytic triad [active]"
/db_xref="CDD:29606"
misc_feature order(120629..120634,120644..120646,120650..120652,
120656..120658,120686..120691,120716..120727,
120743..120745,120794..120799,120806..120808)
/gene="pcp"
/locus_tag="CNE_1c01200"
/note="AB domain interface; other site"
/db_xref="CDD:29606"
misc_feature 120944..120946
/gene="pcp"
/locus_tag="CNE_1c01200"
/note="interchain disulfide; other site"
/db_xref="CDD:29606"
gene complement(121051..122301)
/locus_tag="CNE_1c01210"
/db_xref="GeneID:10916512"
CDS complement(121051..122301)
/locus_tag="CNE_1c01210"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683971.1"
/db_xref="GI:339324278"
/db_xref="GeneID:10916512"
/translation="MEPAPPPPSAPPPAAQPTPEATGPQYSPLARVGLLCFTLLVVYA
SLYPFSGWVDNGVSPFAFLSAPKPRYITDFDLLTNVLGYFPFGALVVLSLHPRMSGGR
ATLVALVAGALLSACMEAFQTWLPSRISSNIDLITNALGALLGGAVVAPFTRALIDDG
RLTRLRHAWFEPHASFAIILLLLWPFAQVFPQEHLFGMGGIVREWLTDPESWPMQVLQ
MVFPQLEAWQDHIGLRPEDMQSQQLLESLVTASSWVGTGLFASIAMRRSAPMLRILAG
LLAAALLLKATAAELQFPSESAFVWLSEGGRFALLTSSLVLALLLYLPRWLRAVLAMV
ALIVLVVLTNVLPSNPYAWISEQGWRMGRFIHFNSLAQWLGWVWPFLAFCYVIWRFEQ
VSLRRHARKKAAARREAAAAGTQE"
misc_feature complement(121810..122226)
/locus_tag="CNE_1c01210"
/note="VanZ like family; Region: VanZ; cl01971"
/db_xref="CDD:207507"
gene complement(122321..123010)
/locus_tag="CNE_1c01220"
/db_xref="GeneID:10916513"
CDS complement(122321..123010)
/locus_tag="CNE_1c01220"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_004683972.1"
/db_xref="GI:339324279"
/db_xref="GeneID:10916513"
/translation="MPPLTRYRQPRDTAVNPATEMPRFLRSARSRLQAALLLAAAGLA
LSGCALTRGNNPTVTYDLGPPAAATPGNGNPAPARLPKLRVAQTDGPNWLDGNALFYR
LQYAQAQRLQAYATQRWVMSPTRLFDERLREAVAARGTLSWFGDSSVPALKVDLIEFD
QVFDSATTSAGVVRMRATVFQQGMLGQQTFEARRPAASADGAGGVKALAEASDAVITA
LLDWIGTLQLK"
misc_feature complement(122366..>122665)
/locus_tag="CNE_1c01220"
/note="Protein of unknown function (DUF330); Region:
DUF330; cl01135"
/db_xref="CDD:199364"
gene complement(123021..123962)
/locus_tag="CNE_1c01230"
/db_xref="GeneID:10916514"
CDS complement(123021..123962)
/locus_tag="CNE_1c01230"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_004683973.1"
/db_xref="GI:339324280"
/db_xref="GeneID:10916514"
/translation="MMENKSHAFLAGVFTIGLAVLVLFAIFWFSSDHAVRVPYDLITR
ATVNGLQPQGDVKYRGLAVGKVESIKFDPQVPGQIIVRVNVNKDTPITRTTYGTLGFQ
GVTGIAYVQLDDSATHDGATASPPLPTSPKAVARIAMRPGFFEELEKRGDSLLTQVET
MMTSLNDMFQSANRTELMAAIHAVRKTAEDYSRLSDSLGPAANRLPKVTENLNATLES
TRRLTQELANPNGTVMRTVDSVGRDMQGAASSVQSAAGTFSEETLPQLNGLARDARQT
ARTFERAAGQFNESPSSVLFGAPAPAPGPGEPGFSAP"
misc_feature complement(<123126..123959)
/locus_tag="CNE_1c01230"
/note="ABC-type transport system involved in resistance to
organic solvents, periplasmic component [Secondary
metabolites biosynthesis, transport, and catabolism];
Region: Ttg2C; COG1463"
/db_xref="CDD:31652"
misc_feature complement(123624..123824)
/locus_tag="CNE_1c01230"
/note="mce related protein; Region: MCE; pfam02470"
/db_xref="CDD:111376"
gene complement(123959..124831)
/locus_tag="CNE_1c01240"
/db_xref="GeneID:10916515"
CDS complement(123959..124831)
/locus_tag="CNE_1c01240"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_004683974.1"
/db_xref="GI:339324281"
/db_xref="GeneID:10916515"
/translation="MSAAQANATPDGKPGRKPDRKADRTPVIEVRDLVKRFGKAVVHD
HVNLDVYRDEVLSIVGGSGSGKTVLLRQIVGLERPTSGSIKVFGEDPTRLRPAQLQAL
RNRWGLQFQRGALFSALSVIDNIALPLRELRALPDNLICQAALLKLQLVGLSARDADK
MPADLSGGMIKRVALARALALEPELLFLDEPTAGLDPMASDDYVRLIRELRRELGLTV
VMITHDLDTLVALSDRVAVLADHKVIAAAPIPEVVKVDHPFIREYFLGERAQRAMQAL
PPHGQPDAAPPGEA"
misc_feature complement(123992..124768)
/locus_tag="CNE_1c01240"
/note="ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary metabolites
biosynthesis, transport, and catabolism]; Region: Ttg2A;
COG1127"
/db_xref="CDD:31324"
misc_feature complement(124043..124750)
/locus_tag="CNE_1c01240"
/note="ABC (ATP-binding cassette) transport system
involved in resistant to organic solvents; ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex...; Region:
ABC_Org_Solvent_Resistant; cd03261"
/db_xref="CDD:73020"
misc_feature complement(124631..124654)
/locus_tag="CNE_1c01240"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73020"
misc_feature complement(order(124163..124165,124262..124267,
124499..124501,124628..124636,124640..124645))
/locus_tag="CNE_1c01240"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73020"
misc_feature complement(124499..124510)
/locus_tag="CNE_1c01240"
/note="Q-loop/lid; other site"
/db_xref="CDD:73020"
misc_feature complement(124310..124339)
/locus_tag="CNE_1c01240"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73020"
misc_feature complement(124262..124279)
/locus_tag="CNE_1c01240"
/note="Walker B; other site"
/db_xref="CDD:73020"
misc_feature complement(124244..124255)
/locus_tag="CNE_1c01240"
/note="D-loop; other site"
/db_xref="CDD:73020"
misc_feature complement(124157..124177)
/locus_tag="CNE_1c01240"
/note="H-loop/switch region; other site"
/db_xref="CDD:73020"
gene complement(124828..125964)
/locus_tag="CNE_1c01250"
/db_xref="GeneID:10916516"
CDS complement(124828..125964)
/locus_tag="CNE_1c01250"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_004683975.1"
/db_xref="GI:339324282"
/db_xref="GeneID:10916516"
/translation="MPLERQTTPDFHITRGDGTVSVALRGDWTALALAGCHQARQLRA
QLHELAQAPDSAQWSLAGVERLDHIGGQLLWQAWNGALPQRLDASEGQRRVFERIAAV
HDEGWKKHMVDRFNPVTLFGASVLSFGAQLGRGVSMLGQLTFDLLRFTRMPQRGPWRE
ISANIYNVGYKALGITALVGFLIGIVLSYLSANQLRTFGASTFIVNILGMAVIRELGP
VLAAILIAGRSGSAITAQIGVMRVTEELDAMLVMGISHGFRLIMPRVIALAIAMPLLV
AWTDVMALAGGILAARWQLGISATFFLRELPDAVPVANLWLGLGKGVVFGILIALTAC
HFGLRIKPNTQSLGEGTTASVVTAITMVILADAVFAILFKDVGL"
misc_feature complement(124846..125490)
/locus_tag="CNE_1c01250"
/note="Permease; Region: Permease; pfam02405"
/db_xref="CDD:145511"
gene 126095..127018
/gene="birA"
/locus_tag="CNE_1c01260"
/db_xref="GeneID:10916517"
CDS 126095..127018
/gene="birA"
/locus_tag="CNE_1c01260"
/EC_number="6.3.4.15"
/codon_start=1
/transl_table=11
/product="biotin-(acetyl-CoA carboxylase) ligase BirA"
/protein_id="YP_004683976.1"
/db_xref="GI:339324283"
/db_xref="GeneID:10916517"
/translation="MFSTIAIDPSPLPRMSAVPPTPSDPSAPSGANWRIDAGALRGML
SPALSDWTLELVEETGSTNADLTAACRQAPWSDAGRLRLAYRQTAGRGRQGRPWQGQA
GMTFSVALPLALAPAQLIGLSLAVGLALVEALGDVEAGLGARIGLKWPNDLQIDEREL
AGILIEAVPAGPQRVWAVIGIGLNLVRDAQMEAALGRELAGVAEAMPGFDAQRDAPRL
LAALLERLAAMRTAFLAHGFGPMARRWSAADAYRDQPVRLLHEGKVIAEGMARGVDEA
GHLLLETPAGLERIASGELSLRPAPGQGGTA"
misc_feature 126149..127006
/gene="birA"
/locus_tag="CNE_1c01260"
/note="biotin--protein ligase; Provisional; Region:
PRK06955"
/db_xref="CDD:180776"
misc_feature <126518..126646
/gene="birA"
/locus_tag="CNE_1c01260"
/note="Biotin/lipoate A/B protein ligase family; Region:
BPL_LplA_LipB; cl14057"
/db_xref="CDD:209859"
misc_feature 126854..126988
/gene="birA"
/locus_tag="CNE_1c01260"
/note="Biotin protein ligase C terminal domain; Region:
BPL_C; pfam02237"
/db_xref="CDD:111161"
gene 127015..127857
/gene="coaX"
/locus_tag="CNE_1c01270"
/db_xref="GeneID:10916518"
CDS 127015..127857
/gene="coaX"
/locus_tag="CNE_1c01270"
/EC_number="2.7.1.33"
/codon_start=1
/transl_table=11
/product="type III pantothenate kinase CoaX"
/protein_id="YP_004683977.1"
/db_xref="GI:339324284"
/db_xref="GeneID:10916518"
/translation="MSAPHLLIDIGNTRLKWAWCEAGAALPATGALPTPWQHGGAVAH
ADAGALQALAADLRALRGSGPMPSVWISNVAGPVIAAAVDAALAEAFGGCAPVQWVRS
TAAQGNLANGYREPTQLGVDRWVGAIGAHRWLPHDTLLVVTAGTATTLDIVTAAADGS
ARFEGGLILPGLALMLGTLARNTAQLPALDVDDAGTVAGAHLRWADNTHDAIAAGCLA
AQAGAIERTWRALGERGPARRPVRCLLSGGARGALAGALAVPFEMHDNLVLLGLHAMA
SAGA"
misc_feature 127021..127854
/gene="coaX"
/locus_tag="CNE_1c01270"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:213144"
gene 127900..128625
/locus_tag="CNE_1c01280"
/db_xref="GeneID:10916519"
CDS 127900..128625
/locus_tag="CNE_1c01280"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683978.1"
/db_xref="GI:339324285"
/db_xref="GeneID:10916519"
/translation="MTAPGQPARPRSPRIVPLLLLLANAMLLGAVLGVFGANPLAGWF
ETPREPQRLRQQVRGERMRVQASPLAPASAPAADAVPRSALPSATLAACIEIGGFSAQ
AARRATEDLAAAALRVEAFARQEQVRWWVHLPAQPTREHAERKLAELRRRNVTEYSLV
TAGTPEATTYTVSLGLFRERERAEQYLDSLRGHGVRTAMLTEAARPLTRQWLRVRDAD
DAARARLEAMRQRYGAEDVLACS"
misc_feature 128281..128487
/locus_tag="CNE_1c01280"
/note="Sporulation related domain; Region: SPOR;
pfam05036"
/db_xref="CDD:113793"
gene complement(128641..129462)
/gene="hldE"
/locus_tag="CNE_1c01290"
/db_xref="GeneID:10916520"
CDS complement(128641..129462)
/gene="hldE"
/locus_tag="CNE_1c01290"
/EC_number="2.7.1.-"
/EC_number="2.7.7.-"
/codon_start=1
/transl_table=11
/product="bifunctional protein HldE"
/protein_id="YP_004683979.1"
/db_xref="GI:339324286"
/db_xref="GeneID:10916520"
/translation="MLSRSGGKPMAGARSSNKLISENKIFKARDDYPDTQCAVNPALR
IHLIRGVMPRSSRRGSRPGRLSIRQAVRDGVTRAHRRRRSQEGVPSRASTPAPTRGWP
PLSDADPMSVPAFESKLTLPDTPAALAARIATLPRPLVFTNGVFDILHRGHATYLAQA
RALGASLVVGVNSDASVKMLGKGDDRPLNHESDRMALLAALESVDLVAMFREQTPVEL
IRLVRPDIYVKGGDYDIDTLEETRLVRSWGGQAYAIPFLHDRSTTKLLTRVRQGS"
misc_feature complement(128650..129072)
/gene="hldE"
/locus_tag="CNE_1c01290"
/note="rfaE bifunctional protein, domain II; Region:
rfaE_dom_II; TIGR02199"
/db_xref="CDD:131254"
misc_feature complement(128659..129042)
/gene="hldE"
/locus_tag="CNE_1c01290"
/note="Cytidylyltransferase; Region: CTP_transf_2;
pfam01467"
/db_xref="CDD:201811"
misc_feature complement(order(128671..128682,129004..129015))
/gene="hldE"
/locus_tag="CNE_1c01290"
/note="active site"
/db_xref="CDD:173912"
misc_feature complement(order(128677..128679,129004..129006,
129013..129015))
/gene="hldE"
/locus_tag="CNE_1c01290"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:173912"
misc_feature complement(129004..129015)
/gene="hldE"
/locus_tag="CNE_1c01290"
/note="HIGH motif; other site"
/db_xref="CDD:173912"
misc_feature complement(128671..128682)
/gene="hldE"
/locus_tag="CNE_1c01290"
/note="KMSKS motif; other site"
/db_xref="CDD:173912"
gene complement(129711..130574)
/locus_tag="CNE_1c01300"
/db_xref="GeneID:10916521"
CDS complement(129711..130574)
/locus_tag="CNE_1c01300"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683980.1"
/db_xref="GI:339324287"
/db_xref="GeneID:10916521"
/translation="MLYPELFKSLEAVRWHMDKDIPWDTFDASMLTDDQAKTIRMNAI
TEWSALPATEMFLRDNRHDSDFSAFMSIWFFEEQKHSLVLMEYLRRFRPDLVPTEEEL
HAVRFEFDPAPPLETLMLHFCGEIRLNHWYRRAAEWHTEPVIKHIYRTLSQDEARHGG
AYLRYMKKYLAQFGDSARAAFAKIGVLMASARRTEKPLHPTNLHVNKALFPNDTVQSR
LPDPDWLEHWLDEQIRFDEGWEKKVIERILHNMSLLFERTFETVQDLNRYRKELNASL
QGTGGAQPAQA"
misc_feature complement(<130023..130535)
/locus_tag="CNE_1c01300"
/note="Ferritin-like superfamily of diiron-containing
four-helix-bundle proteins; Region: Ferritin_like;
cl00264"
/db_xref="CDD:213088"
misc_feature complement(order(130101..130103,130110..130112,
130200..130202,130335..130337,130344..130346,
130437..130439))
/locus_tag="CNE_1c01300"
/note="dinuclear metal binding motif [ion binding]; other
site"
/db_xref="CDD:153097"
gene complement(130775..132040)
/locus_tag="CNE_1c01310"
/db_xref="GeneID:10916522"
CDS complement(130775..132040)
/locus_tag="CNE_1c01310"
/EC_number="3.1.-.-"
/codon_start=1
/transl_table=11
/product="esterase alpha-beta hydrolase superfamily"
/protein_id="YP_004683981.1"
/db_xref="GI:339324288"
/db_xref="GeneID:10916522"
/translation="MHRESFPAPHPALQSGPNPAATALIMMGGGARAAYQAGVLSGLA
RIAARHGKGHGAMPFGIIAGTSAGAINGAGLAIQAGDFQAATQSLAALWHSIHADDVY
RTDVLRVGISGARWLSTLALGWATQRRAPRALFDNTPLGSMLGELFEPERVQASLDSG
ALQAFAVTALSYSTGRHVTFYQSHHRIHPWHRSQRIAIPAQITVDHLLASASIPFLFP
AMPLELDGHHEWFGDGTMRQMSPLSPAIHLGASRVLAIGAASRQRSGWYDTMPAGGYP
SLAQVGGQALASIFLDGLNADLERLLHINRLLARMPELAGDREGWRPVQVMTIAPSEP
IEAIAAEHQKQLPRTVRALLAPLGGTEARGAAFASYLLFEPAFTQALMALGERDAEAQ
ADELAAFLFGIVPGTPPAALPAGERALSP"
misc_feature complement(130874..131992)
/locus_tag="CNE_1c01310"
/note="Predicted esterase of the alpha-beta hydrolase
superfamily [General function prediction only]; Region:
RssA; COG1752"
/db_xref="CDD:31938"
misc_feature complement(131225..131971)
/locus_tag="CNE_1c01310"
/note="Hypothetical patatin similar to Z1214 protein of
Escherichia coli; Region: Pat_hypo_Ecoli_Z1214_like;
cd07209"
/db_xref="CDD:132848"
misc_feature complement(order(131342..131344,131843..131845,
131945..131947,131951..131956))
/locus_tag="CNE_1c01310"
/note="active site"
/db_xref="CDD:132848"
misc_feature complement(131837..131851)
/locus_tag="CNE_1c01310"
/note="nucleophile elbow; other site"
/db_xref="CDD:132848"
gene complement(132078..132875)
/locus_tag="CNE_1c01320"
/db_xref="GeneID:10916523"
CDS complement(132078..132875)
/locus_tag="CNE_1c01320"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683982.1"
/db_xref="GI:339324289"
/db_xref="GeneID:10916523"
/translation="MFGQIPDFTNGFDFMRRLWGSGSGMPAGLMPGLQAMTPPMDLDD
LDKRIADLKAVESWLQLNTNLLRTTIQGLEVQRATLVALQTFGNALSPDAMQSAMENV
ARAANTPSAAAPERAAGADAGSGAQPEPPAAEQPQAAASDTDSALPPNAALWWDLLQQ
QFNQIASSAAAASIAPFGMGGFGAAAGPEAAAQAAAAKPKTGEPGKAASAGTGKPAAR
KAPAKKAPAKKAVKAKPAKDAGNGDDNGKNGGNSGGGGHGPNGSNAA"
gene complement(132950..133783)
/locus_tag="CNE_1c01330"
/db_xref="GeneID:10916524"
CDS complement(132950..133783)
/locus_tag="CNE_1c01330"
/EC_number="4.2.1.17"
/codon_start=1
/transl_table=11
/product="enoyl-CoA hydratase"
/protein_id="YP_004683983.1"
/db_xref="GI:339324290"
/db_xref="GeneID:10916524"
/translation="MTTPTADSTPLSPRYERYRALTLRRHGPILEIIMGAAQSANQKL
ATADANMHRELAEIWRDVSADPEVRVALIRGEGKGFSAGGDLALVEDMANDFETRTRV
WHEARDLVYNVINCDKPVVSAMHGPAVGAGLVAGLLADISIAARTARIVDGHTRLGVA
AGDHAAIVWPLLCGMAKAKYYLMLCESVSGEEAERIGLVSLAVEEDELVARAFEVANR
LAAGSQTAIRWTKYALNNWLRMAGPAFDTSLALEFMGFAGPDVHEGVASLRQKRPPQF
R"
misc_feature complement(132956..133732)
/locus_tag="CNE_1c01330"
/note="Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism]; Region: CaiD; COG1024"
/db_xref="CDD:31227"
misc_feature complement(133127..133723)
/locus_tag="CNE_1c01330"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature complement(order(133313..133315,133322..133327,
133391..133399,133403..133405,133526..133540,
133550..133552,133646..133648,133664..133666))
/locus_tag="CNE_1c01330"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature complement(order(133391..133393,133532..133534))
/locus_tag="CNE_1c01330"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature complement(order(133127..133132,133139..133141,
133184..133186,133193..133195,133226..133228,
133235..133240,133244..133249,133253..133258,
133271..133276,133280..133288,133292..133294,
133310..133321,133355..133366,133427..133429,
133451..133453))
/locus_tag="CNE_1c01330"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
misc_feature complement(132956..>133264)
/locus_tag="CNE_1c01330"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cl15762"
/db_xref="CDD:213139"
gene complement(133905..134885)
/gene="mhpD1"
/locus_tag="CNE_1c01340"
/db_xref="GeneID:10916525"
CDS complement(133905..134885)
/gene="mhpD1"
/locus_tag="CNE_1c01340"
/EC_number="4.2.1.80"
/codon_start=1
/transl_table=11
/product="2-oxopent-4-enoate hydratase"
/protein_id="YP_004683984.1"
/db_xref="GI:339324291"
/db_xref="GeneID:10916525"
/translation="MKLATLKDGSRDGQLVVVSRDLKTAHYATDIAGKLQTVLDDWPF
YAPQLQDLYDALNAGRARHPFPFAPKDCMAPLPRAYQWADGSAYVNHVELVRKARGAE
MPPEFWTDPLMYQGGSDDFVGPQDDIVCASEAFGIDFEAEVAVITGDVRMGATPEQAG
EAIRLVMLANDVSLRNLIPAELGKGFGFFQSKPATAFSPVAVTPDELGEAWRERKVLL
PMTVHWNSKKVGQPDCGTDMVFDFGQLIAHICKTRNVRAGSIVGSGTISNVDRTKGYC
CIAEKRMLETIDEGKPVTEFMKFGDAVKIEMFDAQGHSVFGAIDQLVAPA"
misc_feature complement(134079..134876)
/gene="mhpD1"
/locus_tag="CNE_1c01340"
/note="2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway) [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: MhpD; COG0179"
/db_xref="CDD:30528"
misc_feature complement(134070..134642)
/gene="mhpD1"
/locus_tag="CNE_1c01340"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; pfam01557"
/db_xref="CDD:201859"
gene complement(134968..135966)
/locus_tag="CNE_1c01350"
/db_xref="GeneID:10916526"
CDS complement(134968..135966)
/locus_tag="CNE_1c01350"
/codon_start=1
/transl_table=11
/product="extra-cytoplasmic solute receptor"
/protein_id="YP_004683985.1"
/db_xref="GI:339324292"
/db_xref="GeneID:10916526"
/translation="MRPLGYFRPALAALTAATLFAALFTASAPARADDWPSQPIRWVV
PYPAGGGTDVVARTVAQAITPGLGKQVVIDNRPGAATIVGADAVAHAKPDGYTVLTAD
TATLAANPSLYKKLPYNPDKDFVYIGQLARFPLVLVANPNFPARTLKEVVEYAQKNPG
KVNFASPGAGSPHHLAMELFMDQTRVKMTHVPYKGAAPAVQDLLAGQVDLMFLDLASG
QQNVQAGKLRALGVATPKRLTVLPSVPTVAEGGVAGFEAYAWQGMVAPAGTPKAVVTR
LNAELVKALKTPEVQKKLEGVGVEAVYSTPEEFASYARAEGERWGKLIKAKGITVD"
misc_feature complement(134980..135870)
/locus_tag="CNE_1c01350"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3181"
/db_xref="CDD:32994"
misc_feature complement(134980..135804)
/locus_tag="CNE_1c01350"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene 136147..136980
/locus_tag="CNE_1c01360"
/db_xref="GeneID:10916527"
CDS 136147..136980
/locus_tag="CNE_1c01360"
/codon_start=1
/transl_table=11
/product="IclR family transcriptional regulator"
/protein_id="YP_004683986.1"
/db_xref="GI:339324293"
/db_xref="GeneID:10916527"
/translation="MSEIEEEDTKLRSGIQSIEVGFRLLQALAVSPRAMMLRDLAAAA
GMNPAKAHRYLVSFMRLGAVAQDPVSGRYDLGPFALQLGLAGLNRLDPVKKARPILSQ
LRDELDLTAGIAVWGNHGPTVVHWEESSHPVTVSLRLGDVMPMLNSATGRLYGAYLPR
KQTLPLIERELGARGNDGVPDMPRSLADYDAICAEVRAHGAARTLGGVLPGINAFSMP
VFDANGHLAMGLIVLGAQSIFDAEWGGTMDRRIRDIAQQLSSELGYLGAATPAGETGQ
S"
misc_feature 136192..136938
/locus_tag="CNE_1c01360"
/note="Transcriptional regulator [Transcription]; Region:
IclR; COG1414"
/db_xref="CDD:31604"
misc_feature 136195..136350
/locus_tag="CNE_1c01360"
/note="IclR helix-turn-helix domain; Region: HTH_IclR;
pfam09339"
/db_xref="CDD:150115"
misc_feature 136540..>136818
/locus_tag="CNE_1c01360"
/note="Bacterial transcriptional regulator; Region: IclR;
pfam01614"
/db_xref="CDD:201890"
gene 137039..138034
/locus_tag="CNE_1c01370"
/db_xref="GeneID:10916528"
CDS 137039..138034
/locus_tag="CNE_1c01370"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683987.1"
/db_xref="GI:339324294"
/db_xref="GeneID:10916528"
/translation="MIALVLLVHVLAVVGFVRMPGPLIPMDVSSTPTLEAVLLPPPRP
PAPPAPRPMPRPRPQPRPAEQAPEAEPQEAPAPALATSPQGATEMASGSGGEGSAAKP
ATPAAAPSGGPQGGVDGVRYDPPPSATMHYASFVNGVQNPDGLIRWEQDGSRYRLAVE
TRVLWFRFAFQSGGAMAVQGLLPERYEERRRNKTESSRFDAAAGTAVLASGTQAQFPP
GAQDRFSVFLQLVGLVRGNPQRYVTPGVTETFLVADTRDVEPMQVQYVGEDEIDTGRG
VIRAKHFVRLQRRANDRRRVELWLAQSLGWMPVRLRQTEPDGTQIDLVYRGKEGQ"
misc_feature 137411..138010
/locus_tag="CNE_1c01370"
/note="Protein of unknown function (DUF3108); Region:
DUF3108; pfam11306"
/db_xref="CDD:204623"
gene 138086..138928
/gene="catD1"
/locus_tag="CNE_1c01380"
/db_xref="GeneID:10916529"
CDS 138086..138928
/gene="catD1"
/locus_tag="CNE_1c01380"
/EC_number="3.1.1.24"
/codon_start=1
/transl_table=11
/product="3-oxoadipate enol-lactonase"
/protein_id="YP_004683988.1"
/db_xref="GI:339324295"
/db_xref="GeneID:10916529"
/translation="MTVATPPVETHRIHAEGADLHVRVDGADGPWVILAHALAADHTL
WDATAQHLAGRYRVVRPDMRGHGASDAPLGPYTMTRLADDVVAVMDALQIPQAHFCGI
SVGGMIGQTMGLRHPERLLSLALVATNSQTPMEAHPMWHNRIGQAEAHGMAGMADATL
GRWLTPSFHEAHRDQVSRIRDRLVGTPVRGYVGVAEAIMAFDLAGALSRIHCPTLVVA
GEQDQGATVAMAQSIAAAIPGARLEVVPQAAHLVHVEQPERFHAALDAFLGNAACGGQ
CDVP"
misc_feature 138134..138355
/gene="catD1"
/locus_tag="CNE_1c01380"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
misc_feature 138143..138889
/gene="catD1"
/locus_tag="CNE_1c01380"
/note="3-oxoadipate enol-lactonase; Region: protocat_pcaD;
TIGR02427"
/db_xref="CDD:131480"
misc_feature <138248..138823
/gene="catD1"
/locus_tag="CNE_1c01380"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 139154..139411
/locus_tag="CNE_1c01390"
/db_xref="GeneID:10916530"
CDS 139154..139411
/locus_tag="CNE_1c01390"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683989.1"
/db_xref="GI:339324296"
/db_xref="GeneID:10916530"
/translation="MQMIYNSDNYCIVEFGADVDQAPLEFGGYEIVDKNLKREIFLGG
HLAESFRADVKRLIESEPSVEEVDDFLGKFDNVMMHPLVMH"
misc_feature 139154..139408
/locus_tag="CNE_1c01390"
/note="Protein of unknown function (DUF3567); Region:
DUF3567; pfam12091"
/db_xref="CDD:152526"
gene complement(139484..139876)
/gene="pspE1"
/locus_tag="CNE_1c01400"
/db_xref="GeneID:10916531"
CDS complement(139484..139876)
/gene="pspE1"
/locus_tag="CNE_1c01400"
/EC_number="2.8.1.-"
/codon_start=1
/transl_table=11
/product="rhodanese-like sulfurtransferase PspE"
/protein_id="YP_004683990.1"
/db_xref="GI:339324297"
/db_xref="GeneID:10916531"
/translation="MQHLSPADAQDLLAQSPETLFIDCRSEMEYLFVGHPKGAHNVPW
NDGPDWEVNPHFVQMVKKLAGQASARPVLLICRSGNRSSAAARALEGAGFSNVQFVLH
GFEGDLDAQRHRNTVNGWRHDGLPWEQY"
misc_feature complement(139511..139867)
/gene="pspE1"
/locus_tag="CNE_1c01400"
/note="Member of the Rhodanese Homology Domain
superfamily, subgroup 1. This CD includes the putative
rhodanese-related sulfurtransferases of several
uncharacterized proteins; Region: RHOD_1; cd01522"
/db_xref="CDD:29085"
misc_feature complement(139649..139651)
/gene="pspE1"
/locus_tag="CNE_1c01400"
/note="active site residue [active]"
/db_xref="CDD:29085"
gene 140106..141167
/gene="metH1"
/locus_tag="CNE_1c01410"
/db_xref="GeneID:10916532"
CDS 140106..141167
/gene="metH1"
/locus_tag="CNE_1c01410"
/EC_number="2.1.1.13"
/codon_start=1
/transl_table=11
/product="5-methyltetrahydrofolate--homocysteine
methyltransferase"
/protein_id="YP_004683991.1"
/db_xref="GI:339324298"
/db_xref="GeneID:10916532"
/translation="MSAPESTAAAPRPYTRAAELPRLLQERILILDGAMGTMIQRYKL
TEADYRGARFAEHKVDVKGNNELLLLTRPQVISEIHEQYLAAGADLIETNTFGATRVA
QEDYKMADLAYEMNVEAARLARAACDKYSTPDKPRFVAGAFGPTPKTASISPDVNDPG
ARNVTFEELRDSYYEQGKGLLEGGADVFLVETIFDTLNAKAALFAIDQLFEDTGERLP
VMISGTVTDASGRILSGQTVEAFWNSLRHARPITFGLNCALGATLMRPYIAELAKVCD
AAVSCYPNAGLPNPMSDTGFDETPEVTSSLVEEFAASGLVNLVGGCCGTTPEHIAAIA
ERVADKKPRTWPGQYRDAA"
misc_feature 140160..141119
/gene="metH1"
/locus_tag="CNE_1c01410"
/note="Methionine synthase I (cobalamin-dependent),
methyltransferase domain [Amino acid transport and
metabolism]; Region: MetH; COG0646"
/db_xref="CDD:30991"
misc_feature 140187..141122
/gene="metH1"
/locus_tag="CNE_1c01410"
/note="Homocysteine S-methyltransferase; Region:
S-methyl_trans; pfam02574"
/db_xref="CDD:111469"
gene 141185..143932
/gene="metH2"
/locus_tag="CNE_1c01420"
/db_xref="GeneID:10916533"
CDS 141185..143932
/gene="metH2"
/locus_tag="CNE_1c01420"
/EC_number="2.1.1.13"
/codon_start=1
/transl_table=11
/product="methionine synthase MetH"
/protein_id="YP_004683992.1"
/db_xref="GI:339324299"
/db_xref="GeneID:10916533"
/translation="MSDNQLPPRPMRLSGLEPFTIDDDTLFVNVGERTNVTGSKAFAR
MILNGQFDEALAVARQQVENGAQIIDINMDEAMLDSKAAMVRFLNLIASEPDIARVPI
MIDSSKWEVIEAGLQCVQGKPVVNSISLKEGEEQFRHHAALIRRYGAASVVMAFDEKG
QADTFQRKTEICKRSYDILVNEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATR
WIKQNLPYAKVSGGVSNVSFSFRGNDTVREAIHTVFLYHAIGAGMDMGIVNAGQLGVY
DQLDPELRERVEDVVLNRREDSTDRLLEIADRFKGGGAKKEENLAWRGTPEQPVPVGE
RLAHALVHGITTFIVEDTEEVRQQVEARGGRPIEVIEGPLMDGMNIVGDLFGAGKMFL
PQVVKSARVMKQAVAHLLPYIEEEKRLLAEAGGDVKARGKIVIATVKGDVHDIGKNIV
SVVLQCNNFEVVNMGVMVPCNEILAKAKVEGADIVGLSGLITPSLEEMAYVASEMQRD
DYFRVKKIPLLIGGATTSRVHTAVKIAPNYEGPVVYVPDASRSVSVASSLLSDEGAAK
YLDDLKTDYDRIRTQHANKKATPMVTLAQARANKTPIDWSSYVPPKPKFIGRRVFRNY
DLAELANYIDWGPFFQTWDLAGKFPDILNDEIVGESARKVFSDGKAMLSRLIQGRWLT
ANGVIALLPANTVNDDDIEIYTDETRSKVALTWHNLRQQSERPVVDGVRRPNRCLADF
VAPKDSGIADYVGLFAVTAGLGVEKKEAQFEADHDDYSAIMLKALADRFAEGFAECLH
ERVRKDLWGYDAGEQLTNEQLIAESYRGIRPAPGYPACPEHTVKGPMFEFLDAPEIGM
GITESLAMTPAASVSGFYLAHPQSTYFTIGKIGQDQLDDMAARRHEDRATLERALAPN
L"
misc_feature 141206..143839
/gene="metH2"
/locus_tag="CNE_1c01420"
/note="Methionine synthase I, cobalamin-binding domain
[Amino acid transport and metabolism]; Region: MetH;
COG1410"
/db_xref="CDD:31600"
misc_feature 141263..142033
/gene="metH2"
/locus_tag="CNE_1c01420"
/note="MeTr subgroup of pterin binding enzymes. This
family includes cobalamin-dependent methyltransferases
such as methyltetrahydrofolate, corrinoid iron-sulfur
protein methyltransferase (MeTr) and methionine synthase
(MetH). Cobalamin-dependent...; Region: MeTr; cd00740"
/db_xref="CDD:29546"
misc_feature order(141287..141289,141497..141499,141560..141562,
141566..141568,141644..141646,141761..141763,
141878..141880,141890..141892,141983..141985,
141989..141991)
/gene="metH2"
/locus_tag="CNE_1c01420"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29546"
misc_feature 142178..142822
/gene="metH2"
/locus_tag="CNE_1c01420"
/note="B12 binding domain of methionine synthase. This
domain binds methylcobalamin, which it uses as an
intermediate methyl carrier from methyltetrahydrofolate
(CH3H4folate) to homocysteine (Hcy); Region:
methionine_synthase_B12_BD; cd02069"
/db_xref="CDD:30207"
misc_feature order(142295..142297,142307..142309,142358..142360,
142367..142369,142502..142522,142529..142531,
142640..142648,142652..142660,142751..142753,
142817..142819)
/gene="metH2"
/locus_tag="CNE_1c01420"
/note="B12 binding site [chemical binding]; other site"
/db_xref="CDD:30207"
misc_feature 142511..142513
/gene="metH2"
/locus_tag="CNE_1c01420"
/note="cobalt ligand [ion binding]; other site"
/db_xref="CDD:30207"
misc_feature 143429..143836
/gene="metH2"
/locus_tag="CNE_1c01420"
/note="Vitamin B12 dependent methionine synthase,
activation domain; Region: Met_synt_B12; pfam02965"
/db_xref="CDD:111813"
gene 144196..144657
/locus_tag="CNE_1c01430"
/db_xref="GeneID:10916534"
CDS 144196..144657
/locus_tag="CNE_1c01430"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683993.1"
/db_xref="GI:339324300"
/db_xref="GeneID:10916534"
/translation="MKKLLLSLSALSIAAASSLAMAQGTGVSVGTKADVGASVTTPSP
AAAAQGGLNTAGSAATGAAGAAEKGLSTAGAATSKGLSAAGSAADKGLSTAGAAVDKS
AGTAADATGDAAADAGTKAKHGKHATKSTKKAKTDASVGVSAGADAGAKAQ"
gene 144963..145595
/gene="gacA"
/locus_tag="CNE_1c01440"
/db_xref="GeneID:10916535"
CDS 144963..145595
/gene="gacA"
/locus_tag="CNE_1c01440"
/codon_start=1
/transl_table=11
/product="response regulator GacA"
/protein_id="YP_004683994.1"
/db_xref="GI:339324301"
/db_xref="GeneID:10916535"
/translation="MIRVLIADDHEIVRAGLRQFLSEEPDIQVTGEAGSGDQVMAQLR
DAEFDVLVLDISMPDRNGIDVLKLIRQRKPELPVLILSTYPEDQYAINLIRAGASGYL
TKESAPDDLVKAIRTVAQGRRYVSATVADLLIGGLDKPTEQPVHQMLSEREFQIFCKL
SRGQSVSVIADELFLSVKTVSTYRSRILEKMGMKTNADLTYYAIKNGLVE"
misc_feature 144966..145592
/gene="gacA"
/locus_tag="CNE_1c01440"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:32379"
misc_feature 144975..145319
/gene="gacA"
/locus_tag="CNE_1c01440"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(144984..144989,145122..145124,145146..145148,
145206..145208,145263..145265,145272..145277)
/gene="gacA"
/locus_tag="CNE_1c01440"
/note="active site"
/db_xref="CDD:29071"
misc_feature 145122..145124
/gene="gacA"
/locus_tag="CNE_1c01440"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(145131..145136,145140..145148)
/gene="gacA"
/locus_tag="CNE_1c01440"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 145272..145280
/gene="gacA"
/locus_tag="CNE_1c01440"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 145407..145577
/gene="gacA"
/locus_tag="CNE_1c01440"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature order(145410..145418,145455..145463,145485..145490,
145494..145499,145503..145517,145548..145550)
/gene="gacA"
/locus_tag="CNE_1c01440"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature order(145443..145445,145449..145451,145455..145457,
145548..145556,145563..145565,145572..145577)
/gene="gacA"
/locus_tag="CNE_1c01440"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 145605..146048
/locus_tag="CNE_1c01450"
/db_xref="GeneID:10916536"
CDS 145605..146048
/locus_tag="CNE_1c01450"
/codon_start=1
/transl_table=11
/product="response regulator"
/protein_id="YP_004683995.1"
/db_xref="GI:339324302"
/db_xref="GeneID:10916536"
/translation="MGGTGRGPAIHNMSEQASNTSYRALSILLIEDSAVLRGMLLEYL
KDFPFIENVDWADTEAMALRLLAAGKYDVVIVDLQLRQGNGINVLRAMQRNGTGAVRI
VYTNHAQVSIYRRQCAEAGADYFFDKSLELEQVFRVIEEHAATAP"
misc_feature 145683..146006
/locus_tag="CNE_1c01450"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 145686..146033
/locus_tag="CNE_1c01450"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(145695..145700,145833..145835,145857..145859,
145917..145919,145977..145979,145986..145991)
/locus_tag="CNE_1c01450"
/note="active site"
/db_xref="CDD:29071"
misc_feature 145833..145835
/locus_tag="CNE_1c01450"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(145842..145847,145851..145859)
/locus_tag="CNE_1c01450"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 145986..145994
/locus_tag="CNE_1c01450"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene complement(146098..147501)
/locus_tag="CNE_1c01460"
/db_xref="GeneID:10916537"
CDS complement(146098..147501)
/locus_tag="CNE_1c01460"
/EC_number="2.7.3.-"
/codon_start=1
/transl_table=11
/product="signal transduction histidine kinase"
/protein_id="YP_004683996.1"
/db_xref="GI:339324303"
/db_xref="GeneID:10916537"
/translation="MFKQSFLPHTLLLAGGILLTLAVLVASETGNIRLRESYTDVIRS
QRVQTELAALNGELVNAEAGQRGFLLTGKESYLEPYYKALPRIAELMAQIRAGYAHDP
EGLKQFADTSKLVNSKLNEMALTLVYGKRDLEVALDLIRTDYGKETMDNARRGLDQLQ
AREAGTVSHRLEGAENDVQLSRYGIGLLTAINIILMMAVGVGHAKRLSMAEAVRIQLE
EESVRLDRKVRARTRQLSALAAHLQRVTEDEKTRLARELHDELGAILTAIKLDLHWVR
RKVQEDHPVAAERLTRVMLHVDQGIQIKRRLIEDLRPTVLLNLGLRAAVCQLVEEVGG
RNDWETHVSVPEDLPPLRDEAAIALYRIVQESLTNASKYSEARHIDVSLACQGNLLTL
TVRDDGKGLPADFDPGSTAGHHGLLGMEQRVTALGGSMQIDSSVQAGVRIRIEVPLTD
AVLAPAEEPENQEPARA"
misc_feature complement(146884..147426)
/locus_tag="CNE_1c01460"
/note="Predicted periplasmic ligand-binding sensor domain
[Signal transduction mechanisms]; Region: COG5278"
/db_xref="CDD:34875"
misc_feature complement(146155..147048)
/locus_tag="CNE_1c01460"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(146566..146757)
/locus_tag="CNE_1c01460"
/note="Histidine kinase; Region: HisKA_3; pfam07730"
/db_xref="CDD:203743"
misc_feature complement(146164..146427)
/locus_tag="CNE_1c01460"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(146176..146178,146182..146187,
146200..146202,146206..146208,146254..146259,
146299..146304,146308..146310,146314..146316,
146320..146322,146386..146388,146395..146397,
146407..146409))
/locus_tag="CNE_1c01460"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(146395..146397)
/locus_tag="CNE_1c01460"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(146257..146259,146302..146304,
146308..146310))
/locus_tag="CNE_1c01460"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 147702..147953
/locus_tag="CNE_1c01470"
/db_xref="GeneID:10916538"
CDS 147702..147953
/locus_tag="CNE_1c01470"
/codon_start=1
/transl_table=11
/product="small integral membrane protein"
/protein_id="YP_004683997.1"
/db_xref="GI:339324304"
/db_xref="GeneID:10916538"
/translation="MSLHPLAQALTWAQPVRLARSDRFGSLAMLQYALVFFVIALIAA
IFGFGGIAAGAVEIAKILFFIFLVVALVAAVMGLVRRGR"
gene 148006..148434
/locus_tag="CNE_1c01480"
/db_xref="GeneID:10916539"
CDS 148006..148434
/locus_tag="CNE_1c01480"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683998.1"
/db_xref="GI:339324305"
/db_xref="GeneID:10916539"
/translation="MLTQNPKVRKELNHLSDSADSAIRHIRHAARDTRDAAAPVSAEV
KALIAQLEHTIEVLAREGSAESMRAGQRLRERATDMAHRLRAQTTDGMMRARERMDGA
VEHAQHRVAESPLKAVAIAAAVGALIGLLLANGRRHSEED"
misc_feature 148132..>148353
/locus_tag="CNE_1c01480"
/note="Bacterial protein of unknown function (DUF883);
Region: DUF883; pfam05957"
/db_xref="CDD:147874"
gene complement(148609..148929)
/locus_tag="CNE_1c01490"
/db_xref="GeneID:10916540"
CDS complement(148609..148929)
/locus_tag="CNE_1c01490"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004683999.1"
/db_xref="GI:339324306"
/db_xref="GeneID:10916540"
/translation="MLITFKSHAAQDLIMMKDLAMTLLGIIGKRLGERGVITVEELPT
AIHKLEAAVADAKTHPASSAVEADTGKDEDEEEPLHLGQRAYPFLDMLRASQREGANV
MWGV"
misc_feature complement(148618..148929)
/locus_tag="CNE_1c01490"
/note="Domain of unknown function (DUF1840); Region:
DUF1840; pfam08895"
/db_xref="CDD:192175"
gene 149183..150979
/gene="argS"
/locus_tag="CNE_1c01500"
/db_xref="GeneID:10916541"
CDS 149183..150979
/gene="argS"
/locus_tag="CNE_1c01500"
/EC_number="6.1.1.19"
/codon_start=1
/transl_table=11
/product="arginyl-tRNA synthetase"
/protein_id="YP_004684000.1"
/db_xref="GI:339324307"
/db_xref="GeneID:10916541"
/translation="MLPVQTSNLAAAFTDAVRALAPADATLPAVTFERPKVAAHGDLA
CNIAMQVARALKSNPRELAQRIVDAVQADARAQGLVQAMEIAGPGFINLRLTPAAKAD
VLRAVLAEGDRYGARERGVHGQVLVEFVSANPTGPLHVGHGRQAALGDALANLLSWQG
FHVHREFYYNDAGVQIQTLALSVQARARGLKPGDASWPEAAYNGDYIADIAADFLAGK
TVSASDGEPVTASGNVEDIDSIRKFAVTYLRNEQDIDLQAFGVKFDRYYLESSLYSDG
RVEAAVQSLIGKGKTYESEGALWLRTTDDGDDKDRVMKKSDGTYTYFVPDVAYHTTKW
ERGFTKVINVQGSDHHGTIARVRAGLQGLDMGIPQGYPDYVLHKMVTVMKNGEEVKIS
KRAGSYVTVRDLIEWSNGQDDTCETIRGCLEQGVADWPAHFTRGRDAVRFFLLSRKAD
TEFVFDVDLALKQSDENPVYYVQYAHARICSIFESWGGADWEARLAELAGADLSAVTG
PEASAQAQALGQRLAEFPDMLSVAAAELAPHAVAFYLRDLAGDFHAFYNADRVLVDDE
AVKRARLALLAATRQVLRNGLAVIGVSAPRRM"
misc_feature 149204..149467
/gene="argS"
/locus_tag="CNE_1c01500"
/note="Arginyl tRNA synthetase N terminal dom; Region:
Arg_tRNA_synt_N; smart01016"
/db_xref="CDD:198084"
misc_feature 149207..150976
/gene="argS"
/locus_tag="CNE_1c01500"
/note="arginyl-tRNA synthetase; Reviewed; Region: argS;
PRK01611"
/db_xref="CDD:179308"
misc_feature 149555..150370
/gene="argS"
/locus_tag="CNE_1c01500"
/note="catalytic core domain of arginyl-tRNA synthetases;
Region: ArgRS_core; cd00671"
/db_xref="CDD:185675"
misc_feature order(149564..149566,149573..149575,149579..149581,
149597..149599,149606..149608,150146..150148,
150158..150160,150227..150229,150236..150238)
/gene="argS"
/locus_tag="CNE_1c01500"
/note="active site"
/db_xref="CDD:185675"
misc_feature 149597..149608
/gene="argS"
/locus_tag="CNE_1c01500"
/note="HIGH motif; other site"
/db_xref="CDD:185675"
misc_feature 150353..150364
/gene="argS"
/locus_tag="CNE_1c01500"
/note="KMSK motif region; other site"
/db_xref="CDD:185675"
misc_feature 150488..150976
/gene="argS"
/locus_tag="CNE_1c01500"
/note="Anticodon-binding domain of class Ia aminoacyl tRNA
synthetases and similar domains; Region:
Anticodon_Ia_like; cl12020"
/db_xref="CDD:212339"
misc_feature order(150554..150556,150566..150568,150578..150580,
150602..150604,150614..150619,150623..150628,
150809..150811,150830..150832,150839..150841,
150848..150850)
/gene="argS"
/locus_tag="CNE_1c01500"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153408"
misc_feature order(150602..150604,150611..150616,150623..150628,
150848..150850)
/gene="argS"
/locus_tag="CNE_1c01500"
/note="anticodon binding site; other site"
/db_xref="CDD:153408"
gene 151097..151822
/gene="ftsN"
/locus_tag="CNE_1c01510"
/db_xref="GeneID:10916542"
CDS 151097..151822
/gene="ftsN"
/locus_tag="CNE_1c01510"
/codon_start=1
/transl_table=11
/product="cell division protein FtsN"
/protein_id="YP_004684001.1"
/db_xref="GI:339324308"
/db_xref="GeneID:10916542"
/translation="MQQQRKRESRHVRRNQQRGGTFLGLVLGLIVGLAIAVVVALYIT
KSPTPFQQKSAPRPSEPGNVTSQLPPPAQRADEGPSDPNKPLWSKTPAKPVGQPPEPE
PKANGRSGQNGQQPPVAVARPAEKPVEKPAEKPADKPVASKPAEKPVADPIAEIAQAD
ANKVGYLLQVGAFRSSDDADRQKANLAMQGFEARITERDVNGVKMYRVRLGPFNRIED
MNKARDRLQSSGFEASVIRFTKQ"
misc_feature <151250..151819
/gene="ftsN"
/locus_tag="CNE_1c01510"
/note="Cell division protein [Cell division and chromosome
partitioning]; Region: FtsN; COG3087"
/db_xref="CDD:32901"
misc_feature 151589..151807
/gene="ftsN"
/locus_tag="CNE_1c01510"
/note="Sporulation related domain; Region: SPOR;
pfam05036"
/db_xref="CDD:113793"
gene 151989..152624
/gene="dsbA"
/locus_tag="CNE_1c01520"
/db_xref="GeneID:10916543"
CDS 151989..152624
/gene="dsbA"
/locus_tag="CNE_1c01520"
/codon_start=1
/transl_table=11
/product="thiol:disulfide interchange protein DsbA"
/protein_id="YP_004684002.1"
/db_xref="GI:339324309"
/db_xref="GeneID:10916543"
/translation="MKKLAALFAMFAAVGGLLMSAPSRAAPAEGKEYQVLKAAQPVAA
GKIEVTEFFWYGCPHCYDFEPDLEAWVKKQGSNVVFKRVPVAFRDDLLPHTKIFYALE
AIGKLDAMHTKVFNAIHVDRKRMTDPNEIADFMAKNGVDRKAFLDAYNSFTVTTNSQR
ANKIADAYKIDGVPTVVVQGKFVTSPSIAGNKQGAIQTMDYLVDQVKAKKM"
misc_feature 152073..152612
/gene="dsbA"
/locus_tag="CNE_1c01520"
/note="DsbA family, DsbA subfamily; DsbA is a monomeric
thiol disulfide oxidoreductase protein containing a redox
active CXXC motif imbedded in a TRX fold. It is involved
in the oxidative protein folding pathway in prokaryotes,
and is the strongest thiol...; Region: DsbA_DsbA; cd03019"
/db_xref="CDD:48568"
misc_feature 152130..152537
/gene="dsbA"
/locus_tag="CNE_1c01520"
/note="DSBA-like thioredoxin domain; Region: DSBA;
pfam01323"
/db_xref="CDD:201729"
misc_feature order(152157..152159,152163..152168,152508..152510)
/gene="dsbA"
/locus_tag="CNE_1c01520"
/note="catalytic residues [active]"
/db_xref="CDD:48568"
misc_feature 152247..152255
/gene="dsbA"
/locus_tag="CNE_1c01520"
/note="hinge region; other site"
/db_xref="CDD:48568"
misc_feature order(152265..152291,152304..152363,152373..152399,
152415..152444)
/gene="dsbA"
/locus_tag="CNE_1c01520"
/note="alpha helical domain; other site"
/db_xref="CDD:48568"
gene 152732..153538
/locus_tag="CNE_1c01530"
/db_xref="GeneID:10916544"
CDS 152732..153538
/locus_tag="CNE_1c01530"
/codon_start=1
/transl_table=11
/product="dehydrogenase/reductase oxidoreductase protein"
/protein_id="YP_004684003.1"
/db_xref="GI:339324310"
/db_xref="GeneID:10916544"
/translation="MRPLKVFLTGASSGLGQALAREYASQGAILGLVARREDALREFV
ATLPNPGAVRVYGADVRDADAMARAAQDFLGHFGCPDVVIANAGVSVGTVASEREDLD
AFRQVMDTNWFGVLTTFQPFLHAMQAREPGHFGRRGTLVGIASVAGVRGLPGAGAYSA
SKSAVIKLLESLRLEQRAHGIRVVTIAPGYIRTPMTAHNPYRMPFLTDADVFARKAVR
VIAAGRRFRVIPWPMGVVAALLHVMPRWLYDALAAGAPRKPRRADPPQEP"
misc_feature 152735..153520
/locus_tag="CNE_1c01530"
/note="short chain dehydrogenase; Provisional; Region:
PRK07024"
/db_xref="CDD:180797"
misc_feature 152744..153472
/locus_tag="CNE_1c01530"
/note="short chain dehydrogenase; Provisional; Region:
PRK08251"
/db_xref="CDD:181324"
misc_feature order(152759..152761,152765..152770,152774..152776,
152831..152839,152987..152995,153158..153166,
153203..153205,153215..153217,153293..153304)
/locus_tag="CNE_1c01530"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(153062..153064,153164..153166,153203..153205,
153215..153217)
/locus_tag="CNE_1c01530"
/note="active site"
/db_xref="CDD:187535"
gene 153541..154374
/locus_tag="CNE_1c01540"
/db_xref="GeneID:10916545"
CDS 153541..154374
/locus_tag="CNE_1c01540"
/codon_start=1
/transl_table=11
/product="periplasmic metal ion binding protein"
/protein_id="YP_004684004.1"
/db_xref="GI:339324311"
/db_xref="GeneID:10916545"
/translation="MWRDAIGQQHAAASGVVRIASLVPSVTELLFALGLARQMVARTG
FCIHPEPAVRAVPKVGGTKDVNVARLRELAPTHVVVNIDENRRETVDEIRAFVPNVIV
THPCAPEDNLGLYQLLGGIFGCHAEAEALCTALQVQLDAICVRPWPARRVLYAIWQDP
WMTVSRDTYISRLLALANWQTWPDGGAALQACVGGDCSRPNASGERYPTFRWSDALVR
ELDLVLLSTEPYRFTEDHADALERQLGKTVLLVDGEMLSWYGSRAIDGVRYLAALAAA
N"
misc_feature 153550..154371
/locus_tag="CNE_1c01540"
/note="ABC-type Fe3+-hydroxamate transport system,
periplasmic component [Inorganic ion transport and
metabolism]; Region: FepB; COG0614"
/db_xref="CDD:30959"
misc_feature 153592..154356
/locus_tag="CNE_1c01540"
/note="Helical backbone metal receptor (TroA-like domain).
These proteins have been shown to function in the ABC
transport of ferric siderophores and metal ions such as
Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site
is formed in the interface between...; Region: TroA-like;
cl00262"
/db_xref="CDD:199270"
misc_feature order(153811..153816,153823..153825,153898..153900)
/locus_tag="CNE_1c01540"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29734"
gene complement(154391..155467)
/locus_tag="CNE_1c01550"
/db_xref="GeneID:10916546"
CDS complement(154391..155467)
/locus_tag="CNE_1c01550"
/codon_start=1
/transl_table=11
/product="Zn-dependent hydrolase including glyoxylase"
/protein_id="YP_004684005.1"
/db_xref="GI:339324312"
/db_xref="GeneID:10916546"
/translation="MNALEHQLQYPFGDTMPEPGSKQEVAPGVYWLRMPLPFALDHIN
LWLLRDRLDGRDGWTIIDCGITNDIIKGHWETIFANELEGLPVVRVLVTHSHPDHVGL
AHWLCKRFGVRLWMSLGDYMSARVMGSGTGAGSSAGGDAAAAHFALHGLTDADSQEKL
RARKTYYPSLVPDLPAQYRRMMEGDTVRIGTDAATSAWRVITGFGHSPEHVALYNAAT
NVLISGDMVLPRISTNVSVFDMEPEGNSLQLYLDSLGKYEPLPQDVLILPSHGRPFRN
LHTRIMQLREHHADRLAETLEACGGKACSAHDIVSVIFKRQFDIHQMTFAMGESLAHL
HCLWHRGELMRETGDDGVIRFRAA"
misc_feature complement(154583..155293)
/locus_tag="CNE_1c01550"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
misc_feature complement(154658..155290)
/locus_tag="CNE_1c01550"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
gene 155676..156140
/locus_tag="CNE_1c01560"
/db_xref="GeneID:10916547"
CDS 155676..156140
/locus_tag="CNE_1c01560"
/codon_start=1
/transl_table=11
/product="MerR family transcriptional regulator"
/protein_id="YP_004684006.1"
/db_xref="GI:339324313"
/db_xref="GeneID:10916547"
/translation="MSATPAAASATFTITDLAREFDITPRAIRFYEDQGLLSPEREGP
GGRKRVYNGRERTRLKLTLRGKRLGLTLNEIREILDLYESPRDTTPQLERFLHSLAAH
RRTLEQQMEDLQAQLAEIDQHERQCRALLAAQTGKPQPATEGGDAPARTTAA"
misc_feature 155721..156071
/locus_tag="CNE_1c01560"
/note="Helix-Turn-Helix DNA binding domain of the
regulatory protein GnyR; Region: HTH_GnyR; cd04776"
/db_xref="CDD:133403"
misc_feature 155721..156041
/locus_tag="CNE_1c01560"
/note="Predicted transcriptional regulators
[Transcription]; Region: SoxR; COG0789"
/db_xref="CDD:31132"
misc_feature order(155760..155762,155817..155825)
/locus_tag="CNE_1c01560"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133403"
misc_feature order(155856..155858,155865..155867,155877..155882,
155907..155909,155970..155972,155982..155984,
156000..156002,156012..156014,156021..156026)
/locus_tag="CNE_1c01560"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:133403"
gene 156269..156745
/locus_tag="CNE_1c01570"
/db_xref="GeneID:10916548"
CDS 156269..156745
/locus_tag="CNE_1c01570"
/codon_start=1
/transl_table=11
/product="phenylacetic acid degradation-like protein"
/protein_id="YP_004684007.1"
/db_xref="GI:339324314"
/db_xref="GeneID:10916548"
/translation="MTSSNASAVPAEPGSLSAARADAIATSFSRQGLMTTFGASLRRV
DRGEVELAMPWSDGVTQQHGFFHGGAVGALADSACGYAALTMVGEDEAGLTAEYKINL
LSPAQGERLVAVGRVLKPGRTLIVAQGDVYVEQDGRRKQVATMLMTLCVVKTLGHV"
misc_feature 156374..156712
/locus_tag="CNE_1c01570"
/note="PaaI_thioesterase is a tetrameric acyl-CoA
thioesterase with a hot dog fold and one of several
proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI exist
in archaea and eukaryotes, their function has not...;
Region: PaaI_thioesterase; cd03443"
/db_xref="CDD:48038"
misc_feature order(156464..156466,156551..156553,156572..156583)
/locus_tag="CNE_1c01570"
/note="CoenzymeA binding site [chemical binding]; other
site"
/db_xref="CDD:48038"
misc_feature order(156467..156469,156473..156475,156482..156484,
156554..156568,156572..156574)
/locus_tag="CNE_1c01570"
/note="subunit interaction site [polypeptide binding];
other site"
/db_xref="CDD:48038"
misc_feature order(156470..156472,156494..156499,156506..156511,
156551..156553)
/locus_tag="CNE_1c01570"
/note="PHB binding site; other site"
/db_xref="CDD:48038"
gene 156810..157991
/gene="ivd"
/locus_tag="CNE_1c01580"
/db_xref="GeneID:10916549"
CDS 156810..157991
/gene="ivd"
/locus_tag="CNE_1c01580"
/EC_number="1.3.99.10"
/codon_start=1
/transl_table=11
/product="isovaleryl-CoA dehydrogenase Ivd"
/protein_id="YP_004684008.1"
/db_xref="GI:339324315"
/db_xref="GeneID:10916549"
/translation="MTELPGLKFDLGEDIEMLRNSVRDWAQAELAPRAAEIDRTDQFP
MDAWKKMGDLGVLGITVAEEYGGANMGYLAHMIAMEEISRASASVGLSYGAHSNLCVN
QIHRNGTAAQKAKYLPKLVSGEWIGALAMSEPNAGSDVVSMKLRAELKGDRYVLNGTK
MWITNGPDCDVLVVYAKTEPELGARGMTAFIVEKGMKGFSVAQKLDKLGMRGSHTGEL
VFQDVEVPVENILGAENGGAKVLMSGLDYERAVLSGGPVGIMQACMDVVTPYIHDRKQ
FGQSIGEFQLIQGKVADMYTTLQAARSYLYTVGKNLDALGSGHVRQVRKDCAAVILYT
AEKATWMAGETVQILGGNGYINEYPAGRLWRDAKLYEIGAGTSEIRRMLIGRELFAET
M"
misc_feature 156822..157982
/gene="ivd"
/locus_tag="CNE_1c01580"
/note="isovaleryl-CoA dehydrogenase; Region: PLN02519"
/db_xref="CDD:178134"
misc_feature 156837..157979
/gene="ivd"
/locus_tag="CNE_1c01580"
/note="Isovaleryl-CoA dehydrogenase; Region: IVD; cd01156"
/db_xref="CDD:173845"
misc_feature order(157080..157082,157092..157094,157104..157106,
157221..157223,157299..157301,157362..157364,
157524..157526,157545..157547,157554..157556,
157563..157565,157914..157919,157926..157934)
/gene="ivd"
/locus_tag="CNE_1c01580"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:173845"
misc_feature order(157194..157196,157200..157205,157218..157223,
157293..157295,157299..157301,157935..157937,
157941..157943)
/gene="ivd"
/locus_tag="CNE_1c01580"
/note="FAD binding site [chemical binding]; other site"
/db_xref="CDD:173845"
misc_feature 157551..157553
/gene="ivd"
/locus_tag="CNE_1c01580"
/note="catalytic base [active]"
/db_xref="CDD:173845"
gene 158100..159935
/gene="aceK"
/locus_tag="CNE_1c01590"
/db_xref="GeneID:10916550"
CDS 158100..159935
/gene="aceK"
/locus_tag="CNE_1c01590"
/EC_number="2.7.11.5"
/EC_number="3.1.3.-"
/codon_start=1
/transl_table=11
/product="isocitrate dehydrogenase kinase/phosphatase
AceK"
/protein_id="YP_004684009.1"
/db_xref="GI:339324316"
/db_xref="GeneID:10916550"
/translation="MSHFPKLLSSQIAFDVARTMLDGFDKHYRLFREVSHQAKLKFEA
GDWHGLQQIQRDRIAFYNERVRESSVILEDEYDAENIEDEIWQQIKLHYIGLLTNHHQ
PELAETFFNSVCTRILHRSYFNNDFIFVRPAISTEYIENEESPTRPTFRAYYPGSREG
MAACFERIVHNFQLESPFEDLPRDIGYVVRAVSEHFGDLRIAPNFQIHTLSSLFFRNK
AAFIIGRILNGDHTFPLAIPILHGPSGKLMLDTVLLKKEQLLILFSFTHSYFMVDMEI
PSAYVTFLRDIMPRKPRAEIYTSLGLQKQGKNLFYRDFLHHLQHSSDKFIVAPGIRGL
VMLVFTLPSYPYVFKVIRDFFPAPKETTRELVKSKYQLVKQHDRVGRMADTLEYSDVA
FPLSRFDDALVREFEQHAPSMIEYQRGKDGGEEIVVRHVYIERRMTPLNIYLTEGSDA
QVEHGVIEYGNAVKELIAANIFPGDMLYKNFGVTRHGRVVFYDYDEIEYLTDCNIRDV
PQPRNEEEEMSGEVWYTVRPHDIFPETFRTFLLGDTRVRAAFLRHHADFFDPAMWQSH
KDRLLAGHVHDFFAYHSSERFIHRYGEAGSVQAAVPDPGPARRAA"
misc_feature 158121..159887
/gene="aceK"
/locus_tag="CNE_1c01590"
/note="Isocitrate dehydrogenase kinase/phosphatase [Signal
transduction mechanisms]; Region: COG4579"
/db_xref="CDD:34217"
misc_feature 158121..159875
/gene="aceK"
/locus_tag="CNE_1c01590"
/note="bifunctional isocitrate dehydrogenase
kinase/phosphatase protein; Validated; Region: aceK;
PRK02946"
/db_xref="CDD:179509"
gene 159932..160603
/gene="can"
/locus_tag="CNE_1c01600"
/db_xref="GeneID:10916551"
CDS 159932..160603
/gene="can"
/locus_tag="CNE_1c01600"
/EC_number="4.2.1.1"
/codon_start=1
/transl_table=11
/product="beta-carbonic anhydrase Can"
/protein_id="YP_004684010.1"
/db_xref="GI:339324317"
/db_xref="GeneID:10916551"
/translation="MTDAIAQLFRNNREWVDRVNAEDPTFFMRLANQQAPEYLWIGCS
DSRVPANQILGLAPGEVFVHRNIANVIAHSDLNALAVIQFAVEVLKVRHITVVGHYGC
GGVKVALKRERIGLADNWLRHVRDVADKHEAYLGTLLREDDAHTRLCELNVIEQVNNV
CQTTVLQDAWTRGQAVTVHGWVYGVSDGLLRDLGMAASSNEELHEQLAAAYRQYGDPP
QASIR"
misc_feature 159965..160510
/gene="can"
/locus_tag="CNE_1c01600"
/note="Carbonic anhydrases (CA) are zinc-containing
enzymes that catalyze the reversible hydration of carbon
dioxide in a two-step mechanism in which the nucleophilic
attack of a zinc-bound hydroxide ion on carbon dioxide is
followed by the regeneration of an...; Region:
beta_CA_cladeA; cd00883"
/db_xref="CDD:48222"
misc_feature order(160031..160033,160037..160039,160058..160060,
160064..160072,160106..160108,160115..160117,
160181..160183,160196..160198,160226..160228,
160235..160237,160478..160480)
/gene="can"
/locus_tag="CNE_1c01600"
/note="active site clefts [active]"
/db_xref="CDD:48222"
misc_feature order(160058..160060,160064..160066,160226..160228,
160235..160237)
/gene="can"
/locus_tag="CNE_1c01600"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:48222"
misc_feature order(160061..160072,160076..160078,160082..160087,
160091..160093,160106..160114,160118..160120,
160124..160126,160166..160171,160178..160183,
160289..160291,160478..160480,160484..160489,
160493..160495,160499..160501)
/gene="can"
/locus_tag="CNE_1c01600"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48222"
gene 160654..161832
/gene="thlA"
/locus_tag="CNE_1c01610"
/db_xref="GeneID:10916552"
CDS 160654..161832
/gene="thlA"
/locus_tag="CNE_1c01610"
/EC_number="2.3.1.9"
/codon_start=1
/transl_table=11
/product="acetyl-CoA acetyltransferase ThlA"
/protein_id="YP_004684011.1"
/db_xref="GI:339324318"
/db_xref="GeneID:10916552"
/translation="MEEIVIVSAARTPMAAFQGEFASVTAPQLGAVAIRAAVERAGLK
PEQVEEVVFGCVLPAGQGQAPARQAALGAGLPLGVGCTTVNKMCGSGMRAAMTVYDGL
IAGSFDIAIAGGMESMTNAPYLVPKGRGGYRIGHGMIYDHMMLDGLEDAYDKGRAMGT
FGEDCAAKYGFTREQQDEFAMESVRRAQQATENGDFRWEIAPVTVSGKGGDTVIDTDE
GPRRIKLDKIPSLKPAFAKDGTITAASSSSINDGASALVMMRASTAKKLGLQPIARML
GHTTHAQAPGWFTTAPVEAIAKLYRKLDWTTDSVDLFEINEAFAVVPMAAMHDLKIAR
DKVNIHGGACALGHPIGASGARIMTTLIGALRKTGGKRGVASLCIGGGEATAVGIEIL
"
misc_feature 160654..161829
/gene="thlA"
/locus_tag="CNE_1c01610"
/note="acetyl-CoA acetyltransferase; Provisional; Region:
PRK06954"
/db_xref="CDD:180775"
misc_feature 160666..161823
/gene="thlA"
/locus_tag="CNE_1c01610"
/note="Thiolase are ubiquitous enzymes that catalyze the
reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and...; Region: thiolase;
cd00751"
/db_xref="CDD:29411"
misc_feature order(160720..160722,160801..160803,160843..160845,
160852..160854,160864..160866,160897..160908,
160930..160932,160951..160956,160963..160965,
161008..161010,161485..161487,161491..161493,
161497..161499,161557..161559,161794..161799)
/gene="thlA"
/locus_tag="CNE_1c01610"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29411"
misc_feature order(160915..160917,161695..161697,161785..161787)
/gene="thlA"
/locus_tag="CNE_1c01610"
/note="active site"
/db_xref="CDD:29411"
gene 161926..162606
/locus_tag="CNE_1c01620"
/db_xref="GeneID:10916553"
CDS 161926..162606
/locus_tag="CNE_1c01620"
/codon_start=1
/transl_table=11
/product="dehydrogenase"
/protein_id="YP_004684012.1"
/db_xref="GI:339324319"
/db_xref="GeneID:10916553"
/translation="MPTVLILGASRGIGLEFVRQYRADGWRVIAAARTPEGVGALQAL
GAEAHQVDLSDAGAVAGLGWKLDGEALDVAIYNAGVLGPRTEGAQPVTPQEFDQVMHV
NVLGPMMALPLLLPYVEAGQSGHGGVLAVLSSRMGSITAMEHSTSWLYRVSKAGANAA
LRAVSLDARHATCVALHPGWVKTDMGGQEADLTVQQSVKGMRQVLAGVKRRDNGTFHN
YDGTPIPW"
misc_feature 161935..162603
/locus_tag="CNE_1c01620"
/note="carbonyl reductase sniffer-like, classical (c)
SDRs; Region: carb_red_sniffer_like_SDR_c; cd05325"
/db_xref="CDD:187586"
misc_feature order(161947..161949,161953..161964,162022..162024,
162079..162084,162154..162165,162229..162231,
162319..162327,162373..162375,162385..162387,
162454..162468,162472..162474,162478..162483)
/locus_tag="CNE_1c01620"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187586"
misc_feature order(162082..162084,162100..162102,162211..162213,
162226..162228,162235..162243,162250..162252,
162259..162264,162331..162351,162367..162369,
162376..162381,162388..162393,162400..162405,
162409..162414,162421..162426,162598..162603)
/locus_tag="CNE_1c01620"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187586"
misc_feature order(162232..162234,162325..162327,162373..162375,
162385..162387)
/locus_tag="CNE_1c01620"
/note="active site"
/db_xref="CDD:187586"
gene 162637..163767
/gene="bcd1"
/locus_tag="CNE_1c01630"
/db_xref="GeneID:10916554"
CDS 162637..163767
/gene="bcd1"
/locus_tag="CNE_1c01630"
/EC_number="1.3.8.1"
/codon_start=1
/transl_table=11
/product="acyl-CoA dehydrogenase"
/protein_id="YP_004684013.1"
/db_xref="GI:339324320"
/db_xref="GeneID:10916554"
/translation="MLLTPEQEMIRDAVRQFAQEVIAPQAAQWDRDKTFPKDVHRELA
ALGAYGVAVPEEYGGAGLDYLSLALILEEIAAGDGGTSTVISVNNCPVCSMLMSFASE
AQKQQWLVPLARGEMLGAFCLTEPHVGSDASALRTSAVRDGDHYVLNGVKQFITSGQN
ADVAIVLAVTDKAAGKRGISAFIVPTSTPGYVVARLEDKLGQHSSDTAQILFEDCRVP
AANLLGDEGGGYKMALSGLEGGRIGIASQSIGMARAAFEAALAYAKERESFGQPLFQH
QAVQFRLAEMATRIDVARQMVWHAAALRDAGRPCLKEAAMAKLFASEMAERVCSDAIQ
VFGGYGYVSDFPVERIYRDVRVCQIYEGTSDIQKILIARALA"
misc_feature 162637..163761
/gene="bcd1"
/locus_tag="CNE_1c01630"
/note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region:
CaiA; COG1960"
/db_xref="CDD:32143"
misc_feature 162649..163764
/gene="bcd1"
/locus_tag="CNE_1c01630"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
misc_feature order(162907..162909,162997..162999,163003..163005,
163096..163098,163102..163104,163711..163719,
163723..163725,163729..163731)
/gene="bcd1"
/locus_tag="CNE_1c01630"
/note="active site"
/db_xref="CDD:173838"
gene 163786..164511
/locus_tag="CNE_1c01640"
/db_xref="GeneID:10916555"
CDS 163786..164511
/locus_tag="CNE_1c01640"
/codon_start=1
/transl_table=11
/product="2-hydroxychromene-2-carboxylate isomerase"
/protein_id="YP_004684014.1"
/db_xref="GI:339324321"
/db_xref="GeneID:10916555"
/translation="MHAAKAARFPDSRPGNHNKKGPDMTAAIDFYFDFSSPYGYFAST
RIDDLAQKYGRIVAWHPILLGVVFKTTGASPLPQLPLKGDYSWRDFERTARFHGIEYK
RPTHFPLPTTHAARAMLWLQNHHGDDIATAFAKSVYRALFVDDINIAEPAEIMKLAEP
LGVDVQALDAGATSYQIKDQLKAEIDVAMAKGVFGSPFVIIDGEPFWGFDRFDQVEAH
LKSRRQTELRAVPSLDTKEKKPA"
misc_feature 163855..164445
/locus_tag="CNE_1c01640"
/note="2-hydroxychromene-2-carboxylate isomerase
[Secondary metabolites biosynthesis, transport, and
catabolism]; Region: NahD; COG3917"
/db_xref="CDD:33703"
misc_feature 163867..164445
/locus_tag="CNE_1c01640"
/note="DsbA family, 2-hydroxychromene-2-carboxylate (HCCA)
isomerase subfamily; HCCA isomerase is a glutathione (GSH)
dependent enzyme involved in the naphthalene catabolic
pathway. It converts HCCA, a hemiketal formed
spontaneously after ring cleavage of 1; Region:
DsbA_HCCA_Iso; cd03022"
/db_xref="CDD:48571"
misc_feature 163891..163893
/locus_tag="CNE_1c01640"
/note="putative catalytic residue [active]"
/db_xref="CDD:48571"
gene 164508..165194
/gene="gph1"
/locus_tag="CNE_1c01650"
/db_xref="GeneID:10916556"
CDS 164508..165194
/gene="gph1"
/locus_tag="CNE_1c01650"
/EC_number="3.1.3.18"
/codon_start=1
/transl_table=11
/product="phosphoglycolate phosphatase"
/protein_id="YP_004684015.1"
/db_xref="GI:339324322"
/db_xref="GeneID:10916556"
/translation="MTAATRGHSGRFDCVIFDCDGVLVDSEPIVNRVLNQMLNELGIE
ISLEDSTRLFLGRAVREELDMIARMRGAPLPENWLSTWLARRNAVLEAEVVAVAHVRE
AIGKIAATGMPVCVASGADRIKVKLQLTRTGLVELFQQDEREHIFSATEVARSKPAPD
VYLLAARTMGVEPARCAVVEDSPTGVTAGVAAGMTVFGYAERNDAALLREAGAGTIFT
DMRDLPELVG"
misc_feature 164538..165191
/gene="gph1"
/locus_tag="CNE_1c01650"
/note="Predicted phosphatase/phosphohexomutase [General
function prediction only]; Region: COG0637"
/db_xref="CDD:30982"
misc_feature 164547..165101
/gene="gph1"
/locus_tag="CNE_1c01650"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature order(164559..164567,164859..164864)
/gene="gph1"
/locus_tag="CNE_1c01650"
/note="active site"
/db_xref="CDD:119389"
misc_feature 164559..164576
/gene="gph1"
/locus_tag="CNE_1c01650"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature 164859..164861
/gene="gph1"
/locus_tag="CNE_1c01650"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 165191..165628
/locus_tag="CNE_1c01660"
/db_xref="GeneID:10916557"
CDS 165191..165628
/locus_tag="CNE_1c01660"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684016.1"
/db_xref="GI:339324323"
/db_xref="GeneID:10916557"
/translation="MTAKAAGRLPKAGPVPCPCGSADYAACCGRFHRGEALPPNAEAL
MRSRYSAYVLNDMEWLRQTWHASTCPADLLPDTATRWLGLTVKAHAQQDDTHAEVEFV
ARYKVGGRAKRLHERSRFVCEARAPGEAPRWLYVDGDMIGEAP"
misc_feature 165203..165616
/locus_tag="CNE_1c01660"
/note="hypothetical protein; Provisional; Region:
PRK01842"
/db_xref="CDD:179342"
misc_feature 165299..>165415
/locus_tag="CNE_1c01660"
/note="Phage tail protein (Tail_P2_I); Region: Tail_P2_I;
cl01817"
/db_xref="CDD:163999"
gene 165625..166302
/locus_tag="CNE_1c01670"
/db_xref="GeneID:10916558"
CDS 165625..166302
/locus_tag="CNE_1c01670"
/EC_number="2.5.1.18"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase"
/protein_id="YP_004684017.1"
/db_xref="GI:339324324"
/db_xref="GeneID:10916558"
/translation="MSIEKRNEPEYLLYCFAQSGNAYKVALLLETVGVQRGQQLWQPR
FVDFFNGETRTPEYRAINVMGEVPVLEFGGQRLSQSGAILETLATRLDAYGPRDEAER
AEVLRWLLFDNHKFTSYTATYRFMRNFARSPDPAVLEFFRARCEGAWNVLNAHLAGRA
FLLGERASIADFSLAGYVFFDDEIGVHWRKEYPHIHAWAERIRALPGWKHPYDLMPGH
PLPKHAG"
misc_feature 165655..166248
/locus_tag="CNE_1c01670"
/note="Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones]; Region: Gst;
COG0625"
/db_xref="CDD:30970"
misc_feature 165655..165888
/locus_tag="CNE_1c01670"
/note="GST_N family, unknown subfamily 4; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of...; Region:
GST_N_4; cd03056"
/db_xref="CDD:48605"
misc_feature order(165685..165687,165691..165696,165700..165705,
165712..165717,165865..165867,165874..165879)
/locus_tag="CNE_1c01670"
/note="putative C-terminal domain interface [polypeptide
binding]; other site"
/db_xref="CDD:48605"
misc_feature order(165685..165687,165820..165828,165859..165864)
/locus_tag="CNE_1c01670"
/note="putative GSH binding site (G-site) [chemical
binding]; other site"
/db_xref="CDD:48605"
misc_feature order(165820..165822,165856..165861,165865..165870,
165877..165879)
/locus_tag="CNE_1c01670"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:48605"
misc_feature 165925..166245
/locus_tag="CNE_1c01670"
/note="C-terminal, alpha helical domain of the Glutathione
S-transferase family; Region: GST_C_family; cl02776"
/db_xref="CDD:207726"
misc_feature order(165940..165942,165961..165963,166129..166131,
166138..166143,166150..166152,166162..166164)
/locus_tag="CNE_1c01670"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198286"
misc_feature order(165940..165945,165952..165957,165964..165966,
166075..166077)
/locus_tag="CNE_1c01670"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198286"
misc_feature order(165961..165963,165973..165978,166153..166155,
166162..166164)
/locus_tag="CNE_1c01670"
/note="substrate binding pocket (H-site) [chemical
binding]; other site"
/db_xref="CDD:198286"
gene 166356..167963
/locus_tag="CNE_1c01680"
/db_xref="GeneID:10916559"
CDS 166356..167963
/locus_tag="CNE_1c01680"
/codon_start=1
/transl_table=11
/product="carboxyltransferase"
/protein_id="YP_004684018.1"
/db_xref="GI:339324325"
/db_xref="GeneID:10916559"
/translation="MPTLETKLNARSESFKANAESMQALVADLKARIAKLAEGGGEDA
RNKHLSRGKLLPRERVQQLLDPGTPFLELSQLAAYDMYDNAAPGAGIITGIGRVAGQE
CVIVCNDATVKGGTYYPMTVKKHVRAQEIAEENNLPCIYLVDSGGANLPNQDDVFPDR
DHFGRIFYNQANLSKQGIPQIAVVMGSCTAGGAYVPAMSDESIIVKNQGTIFLGGPPL
VKAATGEEVSAEDLGGADVHTRLSGVADYFAQNDHHALSLARNIVQHLNRRKPDQIRL
HEPVEPLYPVEELYGVIPTDTRKPYDVREVIARLVDGSEFDEFKARYGTTLVCGFARI
WGYPVGIVANNGILFSESALKGAHFIELCCQRKIPLVFLQNITGFMVGRKYENEGIAR
NGAKMVTAVATAQVPKFTVIIGGSFGAGNYGMCGRAYSPRFLWMWPNARISVMGGEQA
ASVLATVRRDGIEGKGGKWSAQEEEAFKQPIRDQYEHQGHPYYASARLWDDGVIDPAQ
TRTVLGLGLSASLNAPIDEMKFGVFRM"
misc_feature 166365..167960
/locus_tag="CNE_1c01680"
/note="3-methylcrotonyl-CoA carboxylase, beta chain;
Region: PLN02820"
/db_xref="CDD:178415"
misc_feature 166377..>166976
/locus_tag="CNE_1c01680"
/note="Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit; Region: ACCA; cl15772"
/db_xref="CDD:210172"
misc_feature <167247..>167717
/locus_tag="CNE_1c01680"
/note="Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit; Region: ACCA; cl15772"
/db_xref="CDD:210172"
gene 168006..168899
/locus_tag="CNE_1c01690"
/db_xref="GeneID:10916560"
CDS 168006..168899
/locus_tag="CNE_1c01690"
/EC_number="3.1.1.-"
/codon_start=1
/transl_table=11
/product="dienelactone hydrolase"
/protein_id="YP_004684019.1"
/db_xref="GI:339324326"
/db_xref="GeneID:10916560"
/translation="MRSVARLLCSLALVTAFAMLAPLCGHAQTANGNGKAARMRFQEQ
VVMLPKAAIPSRIDLEATVFKPAGDGPFPLVVINHGKAPGRPAMQGRARFPAQSVEFL
RRGYAVVLPMRQGFARSGGAYVGGSCDIEANGMMQADDVVATLDFMATQPYVDMERIV
VIGQSHGGLTTMAFSTIGYPGVLGVINFAGGLRNLNCPDWEERLVDAFASYGGLARYP
SLWVYGDNDSYWPVPLPGRMFNAFKARATGPAAQSRLLDVGEFGNDSHRVFSAREGIP
VWLPEVGNFFRSLGLPFDAGT"
misc_feature 168225..168755
/locus_tag="CNE_1c01690"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_5;
pfam12695"
/db_xref="CDD:205024"
misc_feature 168315..>168524
/locus_tag="CNE_1c01690"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 168937..169725
/locus_tag="CNE_1c01700"
/db_xref="GeneID:10916561"
CDS 168937..169725
/locus_tag="CNE_1c01700"
/EC_number="4.2.1.116"
/codon_start=1
/transl_table=11
/product="3-hydroxypropionyl-coenzyme A dehydratase"
/protein_id="YP_004684020.1"
/db_xref="GI:339324327"
/db_xref="GeneID:10916561"
/translation="MEFTALTVNIASHVATVTLNRPDVRNAFNETVIAELTGAFRALG
DMDEVRAIVLAGNGPAFCAGADLNWMKKMAGYSDDQNRADALTLAQMLHTIWSCPRPV
IARIQGDTYAGGMGLVAACDIAVAAEHAHFCLSEARLGLLPATISPYVIRALGEQAAR
RYFITAERFDAAEALRLGFVHTVVPAEALDAKVTELATALVANSPNAVRESKRLVQDV
AGRAIDNDLLADTADRIAKIRASEEGREGVKSFLEKRSPSWRPA"
misc_feature 168937..169722
/locus_tag="CNE_1c01700"
/note="enoyl-CoA hydratase; Provisional; Region: PRK05995"
/db_xref="CDD:180345"
misc_feature 168952..169536
/locus_tag="CNE_1c01700"
/note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate synthase,
methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
dehydratase, and dienoyl-CoA isomerase; Region:
crotonase-like; cd06558"
/db_xref="CDD:119339"
misc_feature order(169009..169011,169015..169017,169111..169113,
169123..169137,169261..169263,169267..169275,
169339..169344,169351..169353)
/locus_tag="CNE_1c01700"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119339"
misc_feature order(169129..169131,169273..169275)
/locus_tag="CNE_1c01700"
/note="oxyanion hole (OAH) forming residues; other site"
/db_xref="CDD:119339"
misc_feature order(169213..169215,169237..169239,169300..169311,
169345..169356,169369..169371,169375..169383,
169387..169392,169405..169410,169414..169419,
169423..169428,169435..169437,169468..169470,
169477..169479,169522..169524,169531..169536)
/locus_tag="CNE_1c01700"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:119339"
gene 169901..171403
/gene="bioA"
/locus_tag="CNE_1c01710"
/db_xref="GeneID:10916562"
CDS 169901..171403
/gene="bioA"
/locus_tag="CNE_1c01710"
/EC_number="2.6.1.62"
/codon_start=1
/transl_table=11
/product="adenosylmethionine-8-amino-7-oxononanoate
aminotransferase"
/protein_id="YP_004684021.1"
/db_xref="GI:339324328"
/db_xref="GeneID:10916562"
/translation="MTLPNLSATVALPGLAGSGARADGQQRRATLDHLSLSPGSDAQA
LGQRSRNAVWHPCTRLRPDDDAVPLAIVRGVGPWLHDADGRRYFDATSSWWVNLFGHA
NPRINAALASQLETLEHVMLAGCTHAPAVELAERLSALTGGALGNVFYASDGASAVEI
ALKMSFHYWRNTGLPAKREFVCLRHGYHGETVGALAVTDVEVFRDAYDPLIRRAHVVM
SPDARQAAPGESAADVAARALAELETLLRERAGQIAALIVEPLVQGAAGMAMYDPSYL
DGARALCDRYRIHLIADEIAVGCGRTGTFFAWEQSRAAEAPLPAHLWPDFLCLSKGIS
GGYLPLSLVLSRPEIQRAFVADELARSFLHSHSYTGNPLACRAALATLDLFAQDDVLA
RNRERAHWLADGMAALAADARLRHVRQRGLIWAADVRDDVAGADFAARFHHAAREREL
LVRPIGNTLYVMPPYVFDAAQARWLGEQLLATLDDVTTDMSTSGEVRHAA"
misc_feature 169994..171367
/gene="bioA"
/locus_tag="CNE_1c01710"
/note="adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional; Region: PRK06943"
/db_xref="CDD:180767"
misc_feature 170039..171358
/gene="bioA"
/locus_tag="CNE_1c01710"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature order(170357..170365,170459..170464,170468..170470,
170675..170677,170777..170779,170783..170788,
170891..170893)
/gene="bioA"
/locus_tag="CNE_1c01710"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(170360..170365,170459..170464,170675..170677,
170777..170779,170786..170788,170891..170893)
/gene="bioA"
/locus_tag="CNE_1c01710"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 170891..170893
/gene="bioA"
/locus_tag="CNE_1c01710"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene 171393..172607
/gene="bioF"
/locus_tag="CNE_1c01720"
/db_xref="GeneID:10916563"
CDS 171393..172607
/gene="bioF"
/locus_tag="CNE_1c01720"
/EC_number="2.3.1.47"
/codon_start=1
/transl_table=11
/product="8-amino-7-oxononanoate synthase"
/protein_id="YP_004684022.1"
/db_xref="GI:339324329"
/db_xref="GeneID:10916563"
/translation="MLLEQLRQAAEQRHALALTRRRRVAHTACAPHQAVGEDGSEPES
LLTFCSNDYMGLANHPDVIAALVEGAQRYGAGSGASHLVSGHSLAHTQLEAELARWLA
PHIPHARTLYFCTGYMANMAVLTALGTAGATLFCESLNHASLIDGARLARADVQRYPH
CDTAVLEALLAASTSERKLIVTDSVFSMDGNVAPLRKLLELAERHDAWIIVDDAHGFG
VLGEQGHGVLEALGLSSERLIYVGTLGKAAGVAGAFVAAHEAIIEHLVNTARPYIYTT
AAPPAVAHALLASLAILEGEEGRQRREQLTRCIAMLREGLAQLAAIAGWTLGDSETAI
QPLIVGDNGAALALSATLEADGIRVGAIRPPTVPEGTARLRITLSASHTEDDVRRLLD
ALSAAVAQWEAA"
misc_feature 171393..172583
/gene="bioF"
/locus_tag="CNE_1c01720"
/note="7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism]; Region: BioF; COG0156"
/db_xref="CDD:30505"
misc_feature 171393..172583
/gene="bioF"
/locus_tag="CNE_1c01720"
/note="8-amino-7-oxononanoate synthase; Reviewed; Region:
PRK05958"
/db_xref="CDD:180327"
misc_feature order(171738..171743,171750..171752,171939..171941,
172026..172028,172035..172037,172119..172121,
172128..172130)
/gene="bioF"
/locus_tag="CNE_1c01720"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:99742"
misc_feature 172128..172130
/gene="bioF"
/locus_tag="CNE_1c01720"
/note="catalytic residue [active]"
/db_xref="CDD:99742"
gene 172604..173341
/gene="bioD"
/locus_tag="CNE_1c01730"
/db_xref="GeneID:10916564"
CDS 172604..173341
/gene="bioD"
/locus_tag="CNE_1c01730"
/EC_number="6.3.3.3"
/codon_start=1
/transl_table=11
/product="dethiobiotin synthetase BioD"
/protein_id="YP_004684023.1"
/db_xref="GI:339324330"
/db_xref="GeneID:10916564"
/translation="MSTRAPFACFVTGTDTGIGKTHASATLLHALHAAGYRTAGMKPV
ASGSEWRDGHWHNDDVAQLRAASSVAVPLGQTCPFLLRTPCSPHLAAAHEGVRITRAP
VRTAFDALRRQADAVVVEGVGGFNVPLDAGAVRWNTADLAVMLAVPVVMVVGIRLGCL
NHAVLTAEAIRARGLPLAGWIANRVDPDMLLADENIATLHASLDAPCLGELPWQLAPA
AAAGRLDLAPLFAAATQYQAEAAGLAA"
misc_feature 172631..173233
/gene="bioD"
/locus_tag="CNE_1c01730"
/note="AAA domain; Region: AAA_26; pfam13500"
/db_xref="CDD:205678"
misc_feature 172631..173233
/gene="bioD"
/locus_tag="CNE_1c01730"
/note="dithiobiotin synthetase; Reviewed; Region: bioD;
PRK00090"
/db_xref="CDD:178855"
gene 173361..174392
/gene="bioB"
/locus_tag="CNE_1c01740"
/db_xref="GeneID:10916565"
CDS 173361..174392
/gene="bioB"
/locus_tag="CNE_1c01740"
/EC_number="2.8.1.6"
/codon_start=1
/transl_table=11
/product="biotin synthase"
/protein_id="YP_004684024.1"
/db_xref="GI:339324331"
/db_xref="GeneID:10916565"
/translation="MTQAHTATTVTTVSVDSLRQSARSHALPDDAAWRVDDVAALFAL
PFNDLLFRAQQVHREHFDANTVQLSTLLSIKTGGCEEDCGYCPQSAHHDAGVKAEKLM
ALDEVLDAARAAKANGATRFCMGAAWRSPKDRHLEPVMDMVREVKAMGLETCVTLGML
KAEQAQQLKDAGLDYYNHNLDTSPEFYGKIITTRTYQDRLDTIGHVRDAGINVCCGGI
VGMGEAREARAGLIAQLANMDPYPESVPINNLVQVEGTPLAGTEALDPFEFVRTIAVA
RITMPRAMVRLSAGREAMDEALQALCFMAGANSIFYGEKLLTTGNPQADRDRALLARL
DIRAEGYAG"
misc_feature 173481..174329
/gene="bioB"
/locus_tag="CNE_1c01740"
/note="biotin synthase; Region: bioB; TIGR00433"
/db_xref="CDD:200012"
misc_feature 173586..174137
/gene="bioB"
/locus_tag="CNE_1c01740"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(173595..173597,173601..173603,173607..173609,
173613..173621,173733..173735,173739..173744,
173820..173828,173895..173897,174012..174014,
174105..174110)
/gene="bioB"
/locus_tag="CNE_1c01740"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 174096..174329
/gene="bioB"
/locus_tag="CNE_1c01740"
/note="Biotin and Thiamin Synthesis associated domain;
Region: BATS; smart00876"
/db_xref="CDD:197944"
gene 174457..176484
/gene="accA1"
/locus_tag="CNE_1c01750"
/db_xref="GeneID:10916566"
CDS 174457..176484
/gene="accA1"
/locus_tag="CNE_1c01750"
/EC_number="6.3.4.14"
/codon_start=1
/transl_table=11
/product="acetyl-/propionyl-coenzyme A carboxylase alpha
chain"
/protein_id="YP_004684025.1"
/db_xref="GI:339324332"
/db_xref="GeneID:10916566"
/translation="MFNKILIANRGEIACRVAATCRRLGIRTVAVYSDADADARHVAF
CDEAVHIGGSAARDSYLRADHIIEMAKETGAQAIHPGYGFLSENEAFAEACAAAGLVF
IGPPASAIHAMGSKSAAKQLMEKAAVPLVPGYHGEDQGPALLRREADRIGYPVLLKAS
AGGGGKGMRVVESGDGFEAALASVKREASASFGDDKVLVEKYLTRPRHIEIQVFADTH
GNCVYLFERDCSVQRRHQKVLEEAPAPGMTEERRRAMGEAAVAAAKAVGYVGAGTVEF
IANQDGSFYFMEMNTRLQVEHPVTEMITGQDLVEWQLRVAAGEALPLTQDQLRIDGHA
LEARIYAENPDKQFLPSTGTLRFLRTPPAVQFMRGEDAHGPAGIRIDAGVREGDTISP
FYDPMIAKLIVWGKDRDEALARMRQALAAYHVVGLSTNVAFLQRLVSSQAFRTADLDT
GLIERNEKILFPPPAPVGLEVIALAVAALFDREARERRIDAADQHSPWTHGGTWRLNG
GVSRALRFGYGEQVLEVTLSTNERGSTLIYADQAAPFACTCQADDIRINLGTRRAHGQ
VHADDETFHVFYAGRHVSLAWLDPLAHAGETESEGGKLTAPMPGKVIAVMVEAGSTVT
RGTPLLVMEAMKMEHTISAPVDGVVSEVLYGVGEQVVEGAQLLAFEGKSGT"
misc_feature 174457..176469
/gene="accA1"
/locus_tag="CNE_1c01750"
/note="Acetyl/propionyl-CoA carboxylase, alpha subunit
[Lipid metabolism]; Region: COG4770"
/db_xref="CDD:34383"
misc_feature 174460..174783
/gene="accA1"
/locus_tag="CNE_1c01750"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature 175462..175818
/gene="accA1"
/locus_tag="CNE_1c01750"
/note="Biotin carboxylase C-terminal domain; Region:
Biotin_carb_C; smart00878"
/db_xref="CDD:197946"
misc_feature 176266..176460
/gene="accA1"
/locus_tag="CNE_1c01750"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature order(176332..176334,176359..176367,176386..176388)
/gene="accA1"
/locus_tag="CNE_1c01750"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature 176362..176364
/gene="accA1"
/locus_tag="CNE_1c01750"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene 176593..177534
/gene="ghrA"
/locus_tag="CNE_1c01760"
/db_xref="GeneID:10916567"
CDS 176593..177534
/gene="ghrA"
/locus_tag="CNE_1c01760"
/EC_number="1.1.1.79"
/EC_number="1.1.1.81"
/codon_start=1
/transl_table=11
/product="glyoxylate/hydroxypyruvate reductase A"
/protein_id="YP_004684026.1"
/db_xref="GI:339324333"
/db_xref="GeneID:10916567"
/translation="MKLQLYVPDGRYDPWIAGFAEALPEAQCVTWEDSRGEPADYAVV
WRPPVEMLRGRTDLKAVFNLGAGVDGILRLRDEAPDALPAGVPIVRLDDAGMAAQMAE
YVTHAVLRYFRKMDAYEAQQRAGNWKFLKPHRREDFTIGMMGVGTLGTHIARTLAGFG
FPVRGWSRTARAIEGVSGFYGDAGQAPFLDGLRVLVNVLPLTPQTENILNAGLFARLA
QGAYVINVARGQHLAEEDLLAAVQSGQVAGATLDVFRTEPLPAEHPFWQEPRITLTPH
ISALTLREDSIAQIAGKIRALRAGQPIAGVVDVQRGY"
misc_feature 176593..177531
/gene="ghrA"
/locus_tag="CNE_1c01760"
/note="bifunctional glyoxylate/hydroxypyruvate reductase
A; Provisional; Region: ghrA; PRK15469"
/db_xref="CDD:185366"
misc_feature 176929..177426
/gene="ghrA"
/locus_tag="CNE_1c01760"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
gene 177573..178508
/gene="mvaB1"
/locus_tag="CNE_1c01770"
/db_xref="GeneID:10916568"
CDS 177573..178508
/gene="mvaB1"
/locus_tag="CNE_1c01770"
/EC_number="4.1.3.4"
/codon_start=1
/transl_table=11
/product="hydroxymethylglutaryl-CoA lyase MvaB"
/protein_id="YP_004684027.1"
/db_xref="GI:339324334"
/db_xref="GeneID:10916568"
/translation="MTMPNYVKIVEVGPRDGLQNEKAMVPTEVKVALINQLTDAGFVN
IEAASFVSPKWVPQMADGADVMARIQRRPGTLYSALTPNMKGFESAIEAGADEVVIFG
AASEAFSQKNINCSIAESIARFAPVAAAAKEKGVRLRGSISCALGCPYQGEVPVHAVV
DVVRRMRELGCDEIDIADTIGVGTPVRVQEVMRAAAAEFALDRLSGHFHDTYGQALSN
ILASLEVGISIFHASVAGLGGCPYAKGATGNVATEDVLYMLHGMGIHTGIDLEAVVRT
GDYISQAIGRANSSRVGRALLTRWAAASDAAPACA"
misc_feature 177591..>178466
/gene="mvaB1"
/locus_tag="CNE_1c01770"
/note="Isopropylmalate/homocitrate/citramalate synthases
[Amino acid transport and metabolism]; Region: LeuA;
COG0119"
/db_xref="CDD:30468"
misc_feature 177597..178418
/gene="mvaB1"
/locus_tag="CNE_1c01770"
/note="3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM
barrel domain; Region: DRE_TIM_HMGL; cd07938"
/db_xref="CDD:163676"
misc_feature order(177615..177620,177627..177629,177717..177719,
177723..177725,177873..177875,178191..178193,
178197..178199,178317..178319)
/gene="mvaB1"
/locus_tag="CNE_1c01770"
/note="active site"
/db_xref="CDD:163676"
misc_feature order(177615..177620,177708..177710)
/gene="mvaB1"
/locus_tag="CNE_1c01770"
/note="catalytic residues [active]"
/db_xref="CDD:163676"
misc_feature order(177618..177620,178191..178193,178197..178199,
178317..178319)
/gene="mvaB1"
/locus_tag="CNE_1c01770"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163676"
gene 178550..179050
/locus_tag="CNE_1c01780"
/db_xref="GeneID:10916569"
CDS 178550..179050
/locus_tag="CNE_1c01780"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684028.1"
/db_xref="GI:339324335"
/db_xref="GeneID:10916569"
/translation="MTVNDEALPESAQRVADLLAGLGHDRPVVMLPATGKTSAEAAAG
LGCSVAEIAKSIIFRRVADDAPVLVIASGSNRVDEAKVAAHVGALGKADARFVREKTG
YAIGGVCPIGHAVAPVMLLDQDLFRYDSLWAAAGHPHAVFNLTPQQLQQMTGAEVADV
AAGSVA"
misc_feature 178583..179029
/locus_tag="CNE_1c01780"
/note="This CD, composed mainly of bacterial single-domain
proteins, includes the Thermus thermophilus (Tt) YbaK-like
protein, a homolog of the trans-acting Escherichia coli
YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium
tumefaciens ProX Ala-tRNA(Pro)...; Region:
ProX_deacylase; cd04333"
/db_xref="CDD:88584"
misc_feature order(178709..178711,178865..178870,178949..178951)
/locus_tag="CNE_1c01780"
/note="putative deacylase active site [active]"
/db_xref="CDD:88584"
gene 179047..179475
/locus_tag="CNE_1c01790"
/db_xref="GeneID:10916570"
CDS 179047..179475
/locus_tag="CNE_1c01790"
/EC_number="3.1.2.-"
/codon_start=1
/transl_table=11
/product="thioesterase"
/protein_id="YP_004684029.1"
/db_xref="GI:339324336"
/db_xref="GeneID:10916570"
/translation="MSPNLRPGLTFSWQYTVPPKATVPRLYDDIPGCPEMPDVLATGY
MVGIMECACLQMLREHLDWPREQSLGTLVSFSHLAPTPPGMTVTVKGELVAVDGRRLR
FQLSAWDGEDKISEGVHERHLIDAGRFNEKVAAKAARAAG"
misc_feature 179059..179445
/locus_tag="CNE_1c01790"
/note="Predicted thioesterase [General function prediction
only]; Region: COG5496"
/db_xref="CDD:35055"
misc_feature order(179185..179187,179194..179199,179206..179208,
179248..179256)
/locus_tag="CNE_1c01790"
/note="active site 1 [active]"
/db_xref="CDD:48035"
misc_feature 179275..179286
/locus_tag="CNE_1c01790"
/note="active site 2 [active]"
/db_xref="CDD:48035"
gene 179739..180695
/gene="gloB1"
/locus_tag="CNE_1c01800"
/db_xref="GeneID:10916571"
CDS 179739..180695
/gene="gloB1"
/locus_tag="CNE_1c01800"
/EC_number="3.1.2.6"
/codon_start=1
/transl_table=11
/product="hydroxyacylglutathione hydrolase GloB"
/protein_id="YP_004684030.1"
/db_xref="GI:339324337"
/db_xref="GeneID:10916571"
/translation="MAGRRGDIPLNESPVPHLPATMRVFERGWLSANNILFVEGDDTA
LVDTGYVTHAPQTVALVAAALQGRPLARVINTHLHSDHCGGNAALQARWQPRTAIPAA
EAAAVAAWDTEALSYNATGQQCDRFTFDSVLNDGDRLRLGGIDWQVVAAPGHDPHAVM
LFAPAERILVSGDALWENGFGVIFPELDGESGFAEQAAVLERIAQLDARLVIPGHGRM
FTDVAAAVERAQGRLAYLGADPARNASHAVKVLVKFKLLEQQRMTQDALVAWMEAAPL
MVRIRQRFMPGLAIAEICAQTVRALAGVKALAVEGEWVVNRD"
misc_feature 179820..180410
/gene="gloB1"
/locus_tag="CNE_1c01800"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
misc_feature 179838..180383
/gene="gloB1"
/locus_tag="CNE_1c01800"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
gene complement(180718..182910)
/locus_tag="CNE_1c01810"
/db_xref="GeneID:10916572"
CDS complement(180718..182910)
/locus_tag="CNE_1c01810"
/codon_start=1
/transl_table=11
/product="TonB-dependent outer membrane receptor"
/protein_id="YP_004684031.1"
/db_xref="GI:339324338"
/db_xref="GeneID:10916572"
/translation="MSKNRYTAPTSAPRLTPLAALAASLTATMATAFVAPAALAQAAT
APAADSAPATATATATAPAGATLREVVVTANPLGSDLNDMVAPVSTLGGDALAVRQGS
TLGDTLDKLPGVSSSYFGPNASRPVIRGLDGDRIKVLQNGGTTVDASTLSYDHAVPVD
PLVAERIEVVRGPAALMYGGNAIGGVVNVIDNRIPKEPIEGIGGAVDASATAGGDQAR
NASALIEAGNGKFAVHADAFARKTSDLHIPGYARSDRLRTTDPLPAGETEAYGRLPNT
SAQQEGGAMGGSYTWADGFVGANYSAYRNEYGTPAEDDVRLKMRQDRFALEGEARNLA
GNTAGWLESVKGKFSYTDYEHKEIEGGETGTIFKNRGWDARLEARHAKIGNMTGVIGT
QFGHTDFSALGEEAFVPSTNTDNAALFVFEELPLTASGDLKLNLGGRLDHSSIKASAN
GNDRFTDANRSFNATSASAGLLYKVNPLWSLTSNLSYTERAPTFYELYANGPHVATGA
WELGDPNANKERATSIDLGVRFKSGAHSAGVSGYYSRFANYLALNATGRTRDEAGDVI
AAGSPGALPEFQYLGVPATLYGFEAEGKTRLLQKMLTTSDTLDFEARADYVRGENRDT
GEPLPRLAPLRLGGALVYGAGPWGARVDVTYAAKQTRVPTNDTPTDAYTLLSLALTYK
FKVSGTQTLVYLRGDNLTNQDARNSASILRDIAPLAGRSVKVGFRTSF"
misc_feature complement(180721..182712)
/locus_tag="CNE_1c01810"
/note="Outer membrane receptor proteins, mostly Fe
transport [Inorganic ion transport and metabolism];
Region: CirA; COG1629"
/db_xref="CDD:31816"
misc_feature complement(180721..182652)
/locus_tag="CNE_1c01810"
/note="TonB dependent/Ligand-Gated channels are created by
a monomeric 22 strand (22,24) anti-parallel beta-barrel.
Ligands apparently bind to the large extracellular loops.
The N-terminal 150-200 residues form a plug from the
periplasmic end of barrel; Region: ligand_gated_channel;
cd01347"
/db_xref="CDD:73259"
misc_feature complement(order(182326..182337,182350..182364,
182398..182430,182476..182499,182518..182535,
182566..182595,182623..182652))
/locus_tag="CNE_1c01810"
/note="N-terminal plug; other site"
/db_xref="CDD:73259"
misc_feature complement(order(181774..181776,181846..181848))
/locus_tag="CNE_1c01810"
/note="ligand-binding site [chemical binding]; other site"
/db_xref="CDD:73259"
gene complement(183070..183471)
/locus_tag="CNE_1c01820"
/db_xref="GeneID:10916573"
CDS complement(183070..183471)
/locus_tag="CNE_1c01820"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684032.1"
/db_xref="GI:339324339"
/db_xref="GeneID:10916573"
/translation="MRTDWFARLRTHGPGLWSALWLALCLLLAQYAGLTHRIVHGGLL
APSATVTTADAASANDPEPHPLAQKFSGHSCVLFDGATVADTLCGKLPLPQLAFGKPV
KPANLAWRWPDLPATHPFQSRAPPAPAIALA"
gene complement(183461..184753)
/gene="yciC"
/locus_tag="CNE_1c01830"
/db_xref="GeneID:10916574"
CDS complement(183461..184753)
/gene="yciC"
/locus_tag="CNE_1c01830"
/codon_start=1
/transl_table=11
/product="metal chaperone YciC"
/protein_id="YP_004684033.1"
/db_xref="GI:339324340"
/db_xref="GeneID:10916574"
/translation="MADRLPVTVLSGFPGAGKTTLLNHLLAHSASRRMAVLVCGPQNG
QALAPLPPGCEAAVLPAGDALLGEVARLAAEGRFDALLMEADGLDEPLAIAEGFLFEA
EHGAGPDATVQPDTLVTVIDAATFLRDLNEAEFLADRGLAQATDDDRTVAEVLVAQVE
CCDVIVLNKADLASAAELARLHAVLQALNPRADIVEASFGKVPPERVQGTGRFDFEAA
ADAPGWLAALRGEALAANASGVSTLVYRRRRPFHPQRFADLIHTEWLREHGSVLRSRG
LFWLASRMDTAGDWNQSGGVCRHGGAGAWWAALDPAEWPADSAERAEVEADMQVDGAP
AAFGDRRQELVLTGLDLDHAALQARLDACLLTDAEMSAGAQAWAAYEDPFPGWVDDFD
DDHEHDHGHDHGDSHGNDCGCGDPDHHHGNHAGHPHAH"
misc_feature complement(183656..184741)
/gene="yciC"
/locus_tag="CNE_1c01830"
/note="Putative GTPases (G3E family) [General function
prediction only]; Region: COG0523"
/db_xref="CDD:30869"
misc_feature complement(184166..184738)
/gene="yciC"
/locus_tag="CNE_1c01830"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(183662..184036)
/gene="yciC"
/locus_tag="CNE_1c01830"
/note="Cobalamin synthesis protein cobW C-terminal domain;
Region: CobW_C; smart00833"
/db_xref="CDD:197902"
gene complement(184986..185672)
/gene="dksA"
/locus_tag="CNE_1c01840"
/db_xref="GeneID:10916575"
CDS complement(184986..185672)
/gene="dksA"
/locus_tag="CNE_1c01840"
/codon_start=1
/transl_table=11
/product="DnaK suppressor protein DksA"
/protein_id="YP_004684034.1"
/db_xref="GI:339324341"
/db_xref="GeneID:10916575"
/translation="MTAATKTKESRSKTGSAAAETLKAQPVKAAPAPRGSTANAEAGA
TKGGPRSSKTAASQSETAVARKRADSAPERTQTPPAASTRESAATMSSNKLLTEAEIL
KMSDKDYMNEAQLAFFKHRLEQLRDEILKNADQTTEHLRETVIVPDPADRATIEEEHA
LELRTRDRERKLLKKVEQSLQRIESGDYGWCEETGEPIGVPRLLARPTATLSLEAQQR
RELRQKLFGD"
misc_feature complement(185019..185345)
/gene="dksA"
/locus_tag="CNE_1c01840"
/note="RNA polymerase-binding protein DksA; Region: dksA;
TIGR02420"
/db_xref="CDD:131473"
gene complement(186019..187104)
/locus_tag="CNE_1c01850"
/db_xref="GeneID:10916576"
CDS complement(186019..187104)
/locus_tag="CNE_1c01850"
/EC_number="3.6.-.-"
/codon_start=1
/transl_table=11
/product="GTPase G3E family"
/protein_id="YP_004684035.1"
/db_xref="GI:339324342"
/db_xref="GeneID:10916576"
/translation="MSKLTPVTILTGFLGSGKTTLLKRILNEQHGMKIAVIENEFGEE
NIDNEILVQDGREQIVQMSNGCICCTIRGDLVQALSTLLTRRDAGEIGFDRVVIETTG
VANPGPVAQTFFMDEEIASRYLLDAVITLVDAKHAHLQLDKQEEAQRQVGFADAIFIT
KSDLVTEADVAELRHRLLHMNPRAPIRLVNFGEAPIDTIFDLRGFNLNAKLEIDPEFL
RADDHDHDHDHEHGEHCGDDCGHDHGHDHAHGHGHAHDHHHHHHHTDRIASFVFRSDK
PFHYGKLEEFLSGILAVYGEKLLRYKGVLYMDGVDRKVVFQGVHQLMGSDIGAKWEEE
TPGTRMVFIGVDLPRDAILKGLENCLA"
misc_feature complement(186022..187092)
/locus_tag="CNE_1c01850"
/note="Putative GTPases (G3E family) [General function
prediction only]; Region: COG0523"
/db_xref="CDD:30869"
misc_feature complement(186613..187089)
/locus_tag="CNE_1c01850"
/note="The function of this protein family is unkown. The
amino acid sequence of YjiA protein in E. coli contains
several conserved motifs that characterizes it as a P-loop
GTPase. YijA gene is among the genes significantly induced
in response to DNA-damage...; Region: CobW_like; cd03112"
/db_xref="CDD:48376"
misc_feature complement(187048..187071)
/locus_tag="CNE_1c01850"
/note="P-loop, Walker A motif; other site"
/db_xref="CDD:48376"
misc_feature complement(186616..186627)
/locus_tag="CNE_1c01850"
/note="Base recognition motif; other site"
/db_xref="CDD:48376"
misc_feature complement(186025..186306)
/locus_tag="CNE_1c01850"
/note="Cobalamin synthesis protein cobW C-terminal domain;
Region: CobW_C; pfam07683"
/db_xref="CDD:203723"
gene complement(187135..187671)
/locus_tag="CNE_1c01860"
/db_xref="GeneID:10916577"
CDS complement(187135..187671)
/locus_tag="CNE_1c01860"
/codon_start=1
/transl_table=11
/product="Fur family transcriptional regulator"
/protein_id="YP_004684036.1"
/db_xref="GI:339324343"
/db_xref="GeneID:10916577"
/translation="MTRPSPDRPAAVPEPAIPTPASLEAAHERLRQLGARVTQPRLCI
LACLIGSDEALTHQAVIDRLPEPGETIDRVTVYRVLDWLVEQGVAQKRAGNDRVFRFS
LVEHEAARAQEHRQHSHFHCTRCDRTFCLDDASAPVQPAAPRVPSGFAIEHVELTVNG
VCAECGKRAPASPGGASH"
misc_feature complement(187186..187554)
/locus_tag="CNE_1c01860"
/note="Ferric uptake regulator(Fur) and related
metalloregulatory proteins; typically iron-dependent,
DNA-binding repressors and activators; Region: Fur_like;
cd07153"
/db_xref="CDD:133478"
misc_feature complement(order(187282..187284,187315..187317,
187321..187323,187366..187368,187510..187512))
/locus_tag="CNE_1c01860"
/note="metal binding site 2 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(187414..187458)
/locus_tag="CNE_1c01860"
/note="putative DNA binding helix; other site"
/db_xref="CDD:133478"
misc_feature complement(order(187210..187212,187261..187263,
187318..187320,187324..187326))
/locus_tag="CNE_1c01860"
/note="metal binding site 1 [ion binding]; metal-binding
site"
/db_xref="CDD:133478"
misc_feature complement(order(187189..187215,187219..187227,
187252..187257,187303..187311))
/locus_tag="CNE_1c01860"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:133478"
misc_feature complement(order(187186..187188,187297..187299,
187306..187308))
/locus_tag="CNE_1c01860"
/note="structural Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:133478"
gene 187819..188718
/gene="dehH"
/locus_tag="CNE_1c01870"
/db_xref="GeneID:10916578"
CDS 187819..188718
/gene="dehH"
/locus_tag="CNE_1c01870"
/EC_number="3.8.1.3"
/codon_start=1
/transl_table=11
/product="haloacetate dehalogenase H-1"
/protein_id="YP_004684037.1"
/db_xref="GI:339324344"
/db_xref="GeneID:10916578"
/translation="MLNDASALLFPNFETFRQRVGEVEIAGVRGGSGPPLLLLHGHPQ
SHLIWHRVAPALADHFTVIATDLRGYGSSSAPPGNAGHEHYSKRTMAQDQVSLMAAFG
FEHFALCGHDRGARVAHRLCMDHPEAVSRAMLLDIAPTLAMYERTSMAFAAAYWHWFF
LIQPAPFPETLINAEPDFYIEKLMGLRHAGLTPFAPDAMAAYTAAMRDPARVHAMCED
YRAAATIDLEHDRADREAGRRLALPLRVLWGEHGVVARCFEPLALWQEVATDISGQAL
PCGHYIPEEAAEPLLEEMLSFFR"
misc_feature 187963..>188361
/gene="dehH"
/locus_tag="CNE_1c01870"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
gene 189014..190000
/locus_tag="CNE_1c01880"
/db_xref="GeneID:10916579"
CDS 189014..190000
/locus_tag="CNE_1c01880"
/codon_start=1
/transl_table=11
/product="extra-cytoplasmic solute receptor"
/protein_id="YP_004684038.1"
/db_xref="GI:339324345"
/db_xref="GeneID:10916579"
/translation="MKRVVKMVAGALAVSAMGVAAGAYAQEFPGGKPISAVVPFSAGG
PTDKVSRELTAIMSKHLGSTIVIENLGGAGGTIGAKKVAQAKNDGHTVLIHHIGMATA
PALYRNLGFDPLKDFEMIGEIADVPMILVGNKSLPPNTFKDLLPYIKANAGKLSLANA
GIGSASHLCGLLFQSAIQTELTTVPYKGAAPALTDILGGQVNLLCDQTTNLAGHLKAH
SVKPYAAMQARRVEAFKDVPTAAEQGMPGVEVKVWHAMYAPKGTPKPVIDKLSAALQK
SVADPAFRAKMAELGAEAVPAQRATPDSLRNYLTAEINKWTPVIKKAGVYAD"
misc_feature 189029..189994
/locus_tag="CNE_1c01880"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3181"
/db_xref="CDD:32994"
misc_feature 189158..189985
/locus_tag="CNE_1c01880"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene 190230..190766
/gene="hslV"
/locus_tag="CNE_1c01890"
/db_xref="GeneID:10916580"
CDS 190230..190766
/gene="hslV"
/locus_tag="CNE_1c01890"
/EC_number="3.4.25.-"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease subunit HslV"
/protein_id="YP_004684039.1"
/db_xref="GI:339324346"
/db_xref="GeneID:10916580"
/translation="MEQYHGTTIVSVRRGNQVALGGDGQVTLGNIVMKGTARKVRRIY
NGKVLVGFAGSTADAFSLLDRFEAKLEKYQGNLTRAAVDLAKDWRSDRALRRLEAMLI
TADRDTTLVITGNGDVLDPEGGIAAIGSGGAYAQSAAKALVENTEMAPKDVVEKALTI
AGELCIYTNTNFVIETLE"
misc_feature 190248..190760
/gene="hslV"
/locus_tag="CNE_1c01890"
/note="Protease HslV and the ATPase/chaperone HslU are
part of an ATP-dependent proteolytic system that is the
prokaryotic homolog of the proteasome. HslV is a dimer of
hexamers (a dodecamer) that forms a central proteolytic
chamber with active sites on the...; Region:
protease_HslV; cd01913"
/db_xref="CDD:48442"
misc_feature order(190248..190250,190296..190298,190302..190304,
190344..190346,190617..190619)
/gene="hslV"
/locus_tag="CNE_1c01890"
/note="active site"
/db_xref="CDD:48442"
misc_feature order(190317..190325,190494..190496,190575..190577,
190587..190589,190626..190631,190638..190640,
190662..190664,190695..190697,190707..190709,
190716..190721,190725..190727)
/gene="hslV"
/locus_tag="CNE_1c01890"
/note="HslU subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:48442"
gene 190817..192148
/gene="hslU"
/locus_tag="CNE_1c01900"
/db_xref="GeneID:10916581"
CDS 190817..192148
/gene="hslU"
/locus_tag="CNE_1c01900"
/codon_start=1
/transl_table=11
/product="ATP-dependent protease ATPase subunit HslU"
/protein_id="YP_004684040.1"
/db_xref="GI:339324347"
/db_xref="GeneID:10916581"
/translation="MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEP
LRQEITPKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVR
DLAEMAIKQTRESEMKKVRTKAEDAAEDRLLDVLLPPARDIGFSQPEEKDSNTRQVFR
KKLREGSLDDKEIELELSAGMPSMDIMGPPGMEDMTEQIRTMFAGLGQGKKARRKMKV
KEAFKLLIDEEAAKLVNDEELKHKAIANVEQNGIVFLDEIDKIASRSEIGGGEVSRQG
VQRDLLPLVEGTTVSTKYGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDS
LSVQDFEAILTQTDASLTKQYQALLSTEEVSLVFAPDGIRRLAEIAFSVNEKVENIGA
RRLYTVMERLLEDLSFHATRSSGETVTIDAAYVDERLGDLAGNEDLSRYVL"
misc_feature 190823..192145
/gene="hslU"
/locus_tag="CNE_1c01900"
/note="ATP-dependent protease ATP-binding subunit HslU;
Provisional; Region: hslU; PRK05201"
/db_xref="CDD:179962"
misc_feature 190871..>191152
/gene="hslU"
/locus_tag="CNE_1c01900"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 190988..191011
/gene="hslU"
/locus_tag="CNE_1c01900"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature 190991..191014
/gene="hslU"
/locus_tag="CNE_1c01900"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature <191492..191818
/gene="hslU"
/locus_tag="CNE_1c01900"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 191570..191587
/gene="hslU"
/locus_tag="CNE_1c01900"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 191789..191791
/gene="hslU"
/locus_tag="CNE_1c01900"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 191819..192103
/gene="hslU"
/locus_tag="CNE_1c01900"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; smart01086"
/db_xref="CDD:198154"
gene 192494..192787
/locus_tag="CNE_1c01910"
/db_xref="GeneID:10916582"
CDS 192494..192787
/locus_tag="CNE_1c01910"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684041.1"
/db_xref="GI:339324348"
/db_xref="GeneID:10916582"
/translation="MVNYKTRRVVLTTGGLLAALAAATAFLCVRPAIPAAEAAQSGTV
GAAAAAAATLALDSGALFTLADRHAGDAMRIAQGSTPQDRAEGLDWDYVQLRL"
gene complement(192861..193472)
/locus_tag="CNE_1c01920"
/db_xref="GeneID:10916583"
CDS complement(192861..193472)
/locus_tag="CNE_1c01920"
/codon_start=1
/transl_table=11
/product="response regulator containing a Fis-type
DNA-binding domain"
/protein_id="YP_004684042.1"
/db_xref="GI:339324349"
/db_xref="GeneID:10916583"
/translation="MTDTLPPVPEAIAPAGTPFLVIDDDEVFAGTLARALTRRGYAVQ
VAHDSRTALALASRIEFAYVTLDLHLEPPPDAGSTVPAESGLQLVSPLRQALPDARIL
ILTGYASIATAVAAVKQGADEYLAKPANVDSILTALMAGVSEDAAQAALEEPVPLSVA
RLEWEHIQRVLAEHDGNISATARALNMHRRTLQRKLGKRPVSR"
misc_feature complement(192867..193418)
/locus_tag="CNE_1c01920"
/note="Response regulator consisting of a CheY-like
receiver domain and a Fis-type HTH domain [Signal
transduction mechanisms / Transcription]; Region: COG4567"
/db_xref="CDD:34205"
misc_feature complement(193053..193415)
/locus_tag="CNE_1c01920"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(193089..193094,193101..193103,
193158..193160,193218..193220,193272..193274,
193401..193406))
/locus_tag="CNE_1c01920"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(193272..193274)
/locus_tag="CNE_1c01920"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(193218..193226,193230..193232,
193263..193265))
/locus_tag="CNE_1c01920"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(193086..193094)
/locus_tag="CNE_1c01920"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(192879..193001)
/locus_tag="CNE_1c01920"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene complement(193469..194863)
/locus_tag="CNE_1c01930"
/db_xref="GeneID:10916584"
CDS complement(193469..194863)
/locus_tag="CNE_1c01930"
/EC_number="2.7.3.-"
/codon_start=1
/transl_table=11
/product="signal transduction histidine kinase"
/protein_id="YP_004684043.1"
/db_xref="GI:339324350"
/db_xref="GeneID:10916584"
/translation="MTTAAAVTRLPDLPFLSPLPAGTSARHGQVTLRRLFWLRWALLA
GQALTVLSCEPIAGIRLPYGPLLVVFGLQALFNLLTGLRLRQHTRRNSAPGEAELMGQ
LLVDLTALSAILFYTGGATNPFVSFYLPGLAIAAAILPWRQVIALALYALACYTLLLF
EYVPLDLHNPDNAVNYHLAGMWLNFVASAVMIALFVARLSGVLRQREAQLNLAREQLL
REARVEDLNGQAAAVAHEIGTPLATLAVIAGELRADASDAGRGTSAINGYLPDLQTME
QQLALCRTTLARLREDPATLAPQRIDGWLPAFAERWQLRHPNASLQASATPGAGAQAV
ETARVGQILTILLDNAARSQQTASRGQEPLQLQIAMAPGNTAPWLSFRIADHGDGIPE
MLRGQLGETPVASQHGGQGIGLYLAQSAARQMGGELAWHDRAGGGTVAELRLPALSTL
SASAATAAMAPRIP"
misc_feature complement(193535..>194287)
/locus_tag="CNE_1c01930"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(193535..193843)
/locus_tag="CNE_1c01930"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(193544..193546,193550..193555,
193568..193570,193574..193576,193622..193633,
193694..193699,193703..193705,193709..193711,
193715..193717,193808..193810,193817..193819,
193829..193831))
/locus_tag="CNE_1c01930"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(193817..193819)
/locus_tag="CNE_1c01930"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(193625..193627,193631..193633,
193697..193699,193703..193705))
/locus_tag="CNE_1c01930"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 195040..195528
/locus_tag="CNE_1c01940"
/db_xref="GeneID:10916585"
CDS 195040..195528
/locus_tag="CNE_1c01940"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684044.1"
/db_xref="GI:339324351"
/db_xref="GeneID:10916585"
/translation="MQAKFRSATLAASVALAAALASGAALAQVDVSNAWVRGTVPTQT
ASGAFMVLHAHDDAKLVGVSSPVGAAELHEMKMEGNVMRMRQVKSLDLPKMKDVELKP
GGYHVMLMDLKSQLKKGDTVPITLKIEQGGKVTEQKVTAEVRDMVPAIAGASGGHGEH
KH"
misc_feature 195130..195444
/locus_tag="CNE_1c01940"
/note="Protein of unknown function (DUF461); Region:
DUF461; pfam04314"
/db_xref="CDD:190941"
gene complement(195708..196643)
/gene="syrM"
/locus_tag="CNE_1c01950"
/db_xref="GeneID:10916586"
CDS complement(195708..196643)
/gene="syrM"
/locus_tag="CNE_1c01950"
/codon_start=1
/transl_table=11
/product="HTH-typetranscriptional regulator SyrM"
/protein_id="YP_004684045.1"
/db_xref="GI:339324352"
/db_xref="GeneID:10916586"
/translation="MNSLRGIDLNLLVVLEALLAERHISRAALRLHLSQPAVSHALGR
LRQLLDDPILVRGKGGLVLSARAHELSGPLAEALAQVRILLGPSGFQPATARRSFRLA
MSDYGALVVLPRLLRAVRKAAPNIDLVVSQASREGMTAQVADGEIDMALGVFTHQPEG
VKSAELFCESYACAVDAATVRDTGRLDQVAYLARSHVLVATHSERMDAIDTAVAKLGG
RRKIACVVPHWSVAPALIAGTNLVLTTARRSLAALEEDPRYAVFAPPFALDDFTFSMI
WHERTEADPAHTWLRERVLAAAASQESEEPISLRG"
misc_feature complement(195768..196640)
/gene="syrM"
/locus_tag="CNE_1c01950"
/note="leucine transcriptional activator; Reviewed;
Region: leuO; PRK09508"
/db_xref="CDD:181918"
misc_feature complement(196440..>196580)
/gene="syrM"
/locus_tag="CNE_1c01950"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(195753..196349)
/gene="syrM"
/locus_tag="CNE_1c01950"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator ToxR regulates the
expression of the toxoflavin biosynthesis genes; contains
the type 2 periplasmic bindinig fold; Region: PBP2_ToxR;
cd08465"
/db_xref="CDD:176154"
misc_feature complement(order(195825..195827,196026..196028,
196137..196139,196311..196313,196323..196328,
196332..196334))
/gene="syrM"
/locus_tag="CNE_1c01950"
/note="putative substrate binding pocket [chemical
binding]; other site"
/db_xref="CDD:176154"
misc_feature complement(order(195888..195890,195930..195932,
195939..195944,195951..195956,195963..195977,
196059..196061,196248..196250,196254..196268,
196272..196277,196284..196289,196293..196298,
196305..196310,196317..196322,196329..196331))
/gene="syrM"
/locus_tag="CNE_1c01950"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176154"
gene 196737..197267
/locus_tag="CNE_1c01960"
/db_xref="GeneID:10916587"
CDS 196737..197267
/locus_tag="CNE_1c01960"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684046.1"
/db_xref="GI:339324353"
/db_xref="GeneID:10916587"
/translation="MSGTQLPFSLPVSLWLPLGTAVLAGAAIPFQAGANATLGRTLGH
PLSATLVSLLVSLAALLPVLWLMRVPLPAPSALARAPGWLWIGGVLGVFYISAALMMA
PRLGAAGFIAAVVAGQVLAALLVDQFGLAGFAVRALTPARLAGAALIVAGMLVMQWGS
ATASGPASQPAAESGS"
misc_feature 196782..197201
/locus_tag="CNE_1c01960"
/note="Protein of unknown function, DUF606; Region:
DUF606; pfam04657"
/db_xref="CDD:191054"
gene complement(197240..197482)
/locus_tag="CNE_1c01970"
/db_xref="GeneID:10916588"
CDS complement(197240..197482)
/locus_tag="CNE_1c01970"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684047.1"
/db_xref="GI:339324354"
/db_xref="GeneID:10916588"
/translation="MSDASAVLTGQPRPVEHCSHCGAGFVCGYVAGLPECWCASQPLL
PARRIVPGQHCLCPACLAERRQAAQEPAQEPDSAAG"
misc_feature complement(197300..197431)
/locus_tag="CNE_1c01970"
/note="Cysteine-rich CWC; Region: Cys_rich_CWC; pfam14375"
/db_xref="CDD:206543"
gene 197829..198755
/gene="argB"
/locus_tag="CNE_1c01980"
/db_xref="GeneID:10916589"
CDS 197829..198755
/gene="argB"
/locus_tag="CNE_1c01980"
/EC_number="2.7.2.8"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase ArgB"
/protein_id="YP_004684048.1"
/db_xref="GI:339324355"
/db_xref="GeneID:10916589"
/translation="MSPMNADNPGPAATTVAAIAPALKAEILAEALPYIRKFHGKTIV
VKYGGNAMTEEKLKHGFARDVILLKLVGMNPVVVHGGGPQIDEALKKVGKVGTFVQGM
RVTDEETMEVVEWVLGGEVQQDIVMLINQYGGQAVGLTGKDGGLIRAKRLQMPDRENP
GAFIDIGYVGDIEAINPAVVKALQDDAFIPVISPIGFSDDGQAYNINADVVAGKMAEI
LKAEKLVMMTNIPGVMDKKGNLLTDLSAREIEELFADGTISGGMLPKISSALDAAKSG
VHSVHIIDGRIEHSLLLEILTEQAFGTMIRSH"
misc_feature 197907..198743
/gene="argB"
/locus_tag="CNE_1c01980"
/note="AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic
(NAGK-C) catalyzes the phosphorylation of the gamma-COOH
group of N-acetyl-L-glutamate (NAG) by ATP in the second
step of arginine biosynthesis found in some bacteria and
photosynthetic organisms using the...; Region: AAK_NAGK-C;
cd04250"
/db_xref="CDD:58616"
misc_feature 197907..197936
/gene="argB"
/locus_tag="CNE_1c01980"
/note="feedback inhibition sensing region; other site"
/db_xref="CDD:58616"
misc_feature order(197910..197918,197922..197924,197931..197936,
198015..198017,198027..198029,198039..198041,
198099..198104,198159..198161,198168..198173,
198186..198188,198195..198197,198207..198209,
198228..198230,198234..198242,198246..198248,
198252..198263,198363..198365,198390..198392,
198693..198695,198702..198707,198717..198719)
/gene="argB"
/locus_tag="CNE_1c01980"
/note="homohexameric interface [polypeptide binding];
other site"
/db_xref="CDD:58616"
misc_feature order(197964..197966,197973..197978,198447..198449,
198510..198518,198528..198530,198597..198599,
198603..198605,198609..198614,198621..198623)
/gene="argB"
/locus_tag="CNE_1c01980"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58616"
misc_feature order(198066..198071,198132..198137,198441..198443,
198447..198452)
/gene="argB"
/locus_tag="CNE_1c01980"
/note="N-acetyl-L-glutamate binding site [chemical
binding]; other site"
/db_xref="CDD:58616"
gene 198827..199765
/locus_tag="CNE_1c01990"
/db_xref="GeneID:10916590"
CDS 198827..199765
/locus_tag="CNE_1c01990"
/EC_number="3.-.-.-"
/codon_start=1
/transl_table=11
/product="haloacid dehalogenase"
/protein_id="YP_004684049.1"
/db_xref="GI:339324356"
/db_xref="GeneID:10916590"
/translation="MPSSLPSPRRVRARLCRRPAGNTSGDTVWLFDLDNTLHDASHAI
FPAINRLMTDYVARVLGCDEATASRVRVDYWQRYGATLLGMIRHHGVDPADFLRAAHE
FPELADMVRVRRGLAAHLRRLPGRKILVTNAPQDYARAVLEIAGIRHCFERVVAIEQM
WVHGHLRPKPDRRMLRRLLVQTRIAPHRAVLVEDTVSHLKRYAGTGIRTAWVTGYLRT
IAPSRPHEVPAVRDDGSRRDAAVRSTLEAEDRRHVGHAAQEQSVTLVAAETQAPQAQP
DNVPRVRARVPNRPAYVNIKVQSMHQLQRRMRRIGS"
misc_feature 198905..199453
/locus_tag="CNE_1c01990"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:212620"
misc_feature 198911..199462
/locus_tag="CNE_1c01990"
/note="Haloacid dehalogenase-like hydrolase; Region:
HAD_2; pfam13419"
/db_xref="CDD:205597"
gene 199762..200433
/locus_tag="CNE_1c02000"
/db_xref="GeneID:10916591"
CDS 199762..200433
/locus_tag="CNE_1c02000"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_004684050.1"
/db_xref="GI:339324357"
/db_xref="GeneID:10916591"
/translation="MTQSNGREPEAVISGSAQDAQDGGQPPATPARKRPRPGERRVQI
LQTLATMLEHPRGEKITTAALAARLSVSEAALYRHFASKAQMYEGLIGFIEQTVFGLI
NQITDKEEHGLRQAHAIVRMLLSFAEKNPGMTRVLTGEALVGEHERLQERINQLVDRI
EASLRQCLKMAVTQAAFPADADIPARAALIMAAVQGQWHRYAKSGFRKSPSDHAEAHL
RVLLS"
misc_feature 199873..200430
/locus_tag="CNE_1c02000"
/note="division inhibitor protein; Provisional; Region:
slmA; PRK09480"
/db_xref="CDD:181894"
misc_feature <199933..200031
/locus_tag="CNE_1c02000"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 200709..201890
/gene="metX"
/locus_tag="CNE_1c02010"
/db_xref="GeneID:10916592"
CDS 200709..201890
/gene="metX"
/locus_tag="CNE_1c02010"
/EC_number="2.3.1.31"
/codon_start=1
/transl_table=11
/product="homoserine O-acetyltransferase MetX"
/protein_id="YP_004684051.1"
/db_xref="GI:339324358"
/db_xref="GeneID:10916592"
/translation="MTDVALPTATPAAFDLPPDSVGVVTPQRMHFAEPLKLRNGSSIA
GYDLMVETYGTLNAARSNAVLVCHALNASHHVAGVYAEDPRDVGWWDNMVGPGKPLDT
NRFFVIGVNNLGSCFGSTGPMSLNPATGAPYGAAFPVVTVEDWVNAQARVADAFGITQ
FAAVMGGSLGGMQAVAWSLMYPDRLRHCIVVASTPKLSAQNIAFNEVARSAILSDPDF
HGGNYYAHGVKPKRGLRVARMIGHITYLSDEDMAEKFGRELKTDDIRFSFDVEFQVES
YLRYQGDKFAEYFDANTYLLITRALDYFDPALAFGGDLTRAMAQTQASFLVASFGTDW
RFAPSRSRELVKALLDNKRPVSYAEIDAPHGHDAFLLDDPRYHNLMRAYYDRIAEEIG
A"
misc_feature 200739..201869
/gene="metX"
/locus_tag="CNE_1c02010"
/note="Homoserine acetyltransferase [Amino acid transport
and metabolism]; Region: MET2; COG2021"
/db_xref="CDD:32204"
misc_feature 200751..201884
/gene="metX"
/locus_tag="CNE_1c02010"
/note="homoserine O-acetyltransferase; Provisional;
Region: metX; PRK00175"
/db_xref="CDD:178916"
gene 201887..202498
/gene="metW"
/locus_tag="CNE_1c02020"
/db_xref="GeneID:10916593"
CDS 201887..202498
/gene="metW"
/locus_tag="CNE_1c02020"
/codon_start=1
/transl_table=11
/product="methionine biosynthesis protein MetW"
/protein_id="YP_004684052.1"
/db_xref="GI:339324359"
/db_xref="GeneID:10916593"
/translation="MNALANPNILALRPDFRAIARWIEPNSTVLDLGCGDGSLLRVLQ
DELDVQAYGIEIRDEGVLACAQKGVHVIQQNLEGGLALFEDKSFDTVILSQTLQTIHN
TAQVLRDTLRVGRECIVSFPNFGYWPHRLSVFRGRMPVSESLPYQWYNTPNVRVLTIS
DFEALAPKVGLRVIDRVVMHEGVTVNWGGNWRGSLAVYRVCAA"
misc_feature 201917..202408
/gene="metW"
/locus_tag="CNE_1c02020"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:205667"
misc_feature 201968..202234
/gene="metW"
/locus_tag="CNE_1c02020"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(201980..202000,202049..202054,202106..202114,
202166..202168)
/gene="metW"
/locus_tag="CNE_1c02020"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(202499..203413)
/locus_tag="CNE_1c02030"
/db_xref="GeneID:10916594"
CDS complement(202499..203413)
/locus_tag="CNE_1c02030"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_004684053.1"
/db_xref="GI:339324360"
/db_xref="GeneID:10916594"
/translation="MPDMPLNAMAVFARVVECGSFSAAALDLGMTPSAVSRHVSRLEA
TLGASLLQRTTRAFALTELGQSVYAACARMTAAAREVTALAGEHGGTPHGVLRVSAPV
SFGQAWLAPRLPALLAKYPGLDLQLTLADRMVDLVEEGMDVAVRIARELAPGLAARPL
REVRYRLVASPGYLARHGTPATPADLPAARCLYLGYGNFGERWTMRHHAGGEKVEVRI
PPRLTLNNSLAIMSMVERDAGIGLVPDFSLGDALDQGRVVTVLADWDILEPYIGTAYA
VYTPTRHVPPKVRAFVDHLAATAADAPA"
misc_feature complement(202529..203413)
/locus_tag="CNE_1c02030"
/note="LysR family transcriptional regulator; Provisional;
Region: PRK14997"
/db_xref="CDD:184959"
misc_feature complement(203219..203398)
/locus_tag="CNE_1c02030"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(202529..203134)
/locus_tag="CNE_1c02030"
/note="The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA and its related
homologs, contains the type 2 periplasmic binding domain;
Region: PBP2_CrgA_like; cd08422"
/db_xref="CDD:176114"
misc_feature complement(order(202592..202594,202682..202684,
202733..202735,202925..202927,202931..202933,
202973..202975,203090..203092,203102..203104))
/locus_tag="CNE_1c02030"
/note="putative effector binding pocket; other site"
/db_xref="CDD:176114"
misc_feature complement(order(202706..202708,202715..202720,
202739..202753,202844..202846,203027..203047,
203051..203053,203063..203065,203072..203077,
203081..203086,203096..203101))
/locus_tag="CNE_1c02030"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176114"
gene 203524..204411
/locus_tag="CNE_1c02040"
/db_xref="GeneID:10916595"
CDS 203524..204411
/locus_tag="CNE_1c02040"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684054.1"
/db_xref="GI:339324361"
/db_xref="GeneID:10916595"
/translation="MPSQQPLPGGAWRMVAAMLLSGTIGWFVVTSGQPPLDVVFFRCL
FGGAALLGVLTLQRGWVRMTRAQLGWLVLGGVTLVLNWLALFSAYAYSGIAIATVVYH
TQPFFLLMLTSVIQREPFPFARLPWLVLAFAGVMLITGLEHGATGTAMLAGIGLGLLA
ALLYAVTTLATRRLQAIPPGQIAGLQMVLGVLMLAPLAHPAAGSYGTGTWAALLALGL
VHTGVMYTLLYGAFQRLTVVSIATLSFIYPLVAIVIDVMVFGVVLGPLQIAGMALVLL
GVVANQLGWSLPLRRRAQG"
gene 204536..205384
/locus_tag="CNE_1c02050"
/db_xref="GeneID:10916596"
CDS 204536..205384
/locus_tag="CNE_1c02050"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684055.1"
/db_xref="GI:339324362"
/db_xref="GeneID:10916596"
/translation="MSTAPQTQAATAASPLHPFDDALALEPAGGHRFLGRTTPEYWNM
IGPFGGITAATLLQAALDHPQRLGDPVSLTVNFAGPIAEGPFEIEARPVRTNRSTQHW
TLELRQGDAVATTATAMFAVRRETWACGEALMPEVPAADTLPVMSGFAPVRWLKSYDM
RPVRGAKPATEAGTEHPDSLTQFWLRDAPARTPDFAALAAWADSFYPRIFLKRAGFVP
AGTVSMTTYFHADAATLAALGDSHVLASAQAQVFRQGFFDQRAQLWSARGELIASSHQ
IVYYKE"
misc_feature 204644..205372
/locus_tag="CNE_1c02050"
/note="Thioesterase-like superfamily; Region: 4HBT_3;
pfam13622"
/db_xref="CDD:205800"
misc_feature <204689..204865
/locus_tag="CNE_1c02050"
/note="PaaI_thioesterase is a tetrameric acyl-CoA
thioesterase with a hot dog fold and one of several
proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI exist
in archaea and eukaryotes, their function has not...;
Region: PaaI_thioesterase; cd03443"
/db_xref="CDD:48038"
misc_feature order(204689..204691,204698..204703,204743..204745)
/locus_tag="CNE_1c02050"
/note="PHB binding site; other site"
/db_xref="CDD:48038"
misc_feature order(204743..204745,204764..204775)
/locus_tag="CNE_1c02050"
/note="CoenzymeA binding site [chemical binding]; other
site"
/db_xref="CDD:48038"
misc_feature order(204746..204760,204764..204766)
/locus_tag="CNE_1c02050"
/note="subunit interaction site [polypeptide binding];
other site"
/db_xref="CDD:48038"
gene complement(205398..206657)
/gene="ampG"
/locus_tag="CNE_1c02060"
/db_xref="GeneID:10916597"
CDS complement(205398..206657)
/gene="ampG"
/locus_tag="CNE_1c02060"
/codon_start=1
/transl_table=11
/product="protein AmpG"
/protein_id="YP_004684056.1"
/db_xref="GI:339324363"
/db_xref="GeneID:10916597"
/translation="MTFQTYLDIFRNRRIGAMLALGFASGLPLALTSGTLQAWMTVEG
LDIKTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLVTQLGLVLGIAGMAFC
PPREALWMLAALATLVAFLSASQDIVFDAYSTDVLRPAERGAGAAVKVLGYRLAMLVS
GGLALWLADRVLGWQQTYLLMAALMGVGIVTLLWAPEPDVPARTPHSLEEAVVGPLRD
FFGRQGAWWLLLLIVLYKLGDAFAGSLSTTFLIRGVGFSAGEVGIVNKTLGLAATIIG
ALFGGTLMVRLGLYRSLMLFGVLQAVSNLGYWILAVTPPHLWTMGTAIAVENLCGGMG
TAAFVALLMTLCNRSFSATQYALLSALASVGRVYVGPSSGYMVEAWGWAPFYLGTVVV
ALPGVMLLWAMRHTVHRYEAQAREAIA"
misc_feature complement(205410..206615)
/gene="ampG"
/locus_tag="CNE_1c02060"
/note="muropeptide transporter; Reviewed; Region: ampG;
PRK11902"
/db_xref="CDD:183369"
misc_feature complement(205446..206615)
/gene="ampG"
/locus_tag="CNE_1c02060"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(205560..205562,205569..205574,
205581..205586,205593..205598,205629..205631,
205638..205643,205653..205655,205662..205667,
205674..205676,205827..205829,205839..205841,
205848..205850,205863..205865,205875..205877,
205917..205919,205926..205931,205938..205943,
205950..205952,206187..206189,206205..206210,
206217..206222,206256..206258,206265..206270,
206277..206282,206289..206294,206457..206462,
206466..206471,206484..206489,206496..206498,
206547..206552,206556..206564,206571..206573))
/gene="ampG"
/locus_tag="CNE_1c02060"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 206813..207775
/locus_tag="CNE_1c02070"
/db_xref="GeneID:10916598"
CDS 206813..207775
/locus_tag="CNE_1c02070"
/EC_number="3.4.-.-"
/codon_start=1
/transl_table=11
/product="peptidase family M48"
/protein_id="YP_004684057.1"
/db_xref="GI:339324364"
/db_xref="GeneID:10916598"
/translation="MLRRLQGVQRPTRDRLVRALALAAVAAPMAWCMPAQAQDSEAGG
IRLDRSGSAVRKIVPVEAIEQQAAQEYEQLKQEAIAKHALAAADNPQLVRLRTIGKRL
LPQTARWNERARQWQWEINLIGSRQVNAFCMPGGKIAFYTGLLDQLKLTDDEIAMAMG
HEIAHALQEHARERAAKSEITNLGANVISQLFGFGNLGNMALGTGAHLLTLRFSRADE
SEADLIGMDIAARAGYDPRAAVSLWQKMGKVSQSGTEFLSTHPSGRSRIADLEKHLPE
VLPLYARASNTTVDRLPPYRANVANLGGAPVDSGDDDRQKPLQR"
misc_feature 207092..207616
/locus_tag="CNE_1c02070"
/note="Peptidase family M48; Region: Peptidase_M48;
pfam01435"
/db_xref="CDD:201797"
gene complement(207846..208793)
/gene="argC"
/locus_tag="CNE_1c02080"
/db_xref="GeneID:10916599"
CDS complement(207846..208793)
/gene="argC"
/locus_tag="CNE_1c02080"
/EC_number="1.2.1.38"
/codon_start=1
/transl_table=11
/product="N-acetyl-gamma-glutamyl-phosphate reductase
ArgC"
/protein_id="YP_004684058.1"
/db_xref="GI:339324365"
/db_xref="GeneID:10916599"
/translation="MVFKVFVDGQEGTTGLRLLDYLSGRSDVELLRIADDKRKDPAER
ARFLNAADVAFLCLPDAASREAVSLVTNPNTCVIDASTAFRTSDSWAYGLPELARGQR
EKIRDSKRIAVPGCHASAFVLAVRPLVDAGVLPSDYPVSAFSLTGYSGGGKSMIAEFE
AGGNPKLDSPRPYALGLEHKHLPEMRVQAGLAQAPIFNPIVGNFLKGLAVTVPVFTDR
LARKVSPEQIVEIYRKHYEGEQFVRVMPYNSADNLDGGFFDVQANNDTNRVDLFVFGN
AERLNLVARLDNLGKGAAGAAVQCMNVHVGADEATGLRA"
misc_feature complement(207855..208793)
/gene="argC"
/locus_tag="CNE_1c02080"
/note="N-acetyl-gamma-glutamyl-phosphate reductase;
Provisional; Region: PRK11863"
/db_xref="CDD:183344"
misc_feature complement(208479..208784)
/gene="argC"
/locus_tag="CNE_1c02080"
/note="Semialdehyde dehydrogenase, NAD binding domain;
Region: Semialdhyde_dh; smart00859"
/db_xref="CDD:197927"
misc_feature complement(<208056..208415)
/gene="argC"
/locus_tag="CNE_1c02080"
/note="Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain; Region: Gp_dh_C; cl15856"
/db_xref="CDD:210256"
gene complement(209123..209899)
/gene="exoA"
/locus_tag="CNE_1c02090"
/db_xref="GeneID:10916600"
CDS complement(209123..209899)
/gene="exoA"
/locus_tag="CNE_1c02090"
/EC_number="3.1.11.2"
/codon_start=1
/transl_table=11
/product="exodeoxyribonuclease III"
/protein_id="YP_004684059.1"
/db_xref="GI:339324366"
/db_xref="GeneID:10916600"
/translation="MLRIISANLNGIRSASKKGFFDWMGKQDADMVCVQELKAQAADM
TEAFLAPHGYHGYFHYAEKKGYSGVGLYTRHQPERVVTGFGIPEFDNEGRYVEVQYPH
LAVISVYVPSGSSGEERQQAKFRFMEAFLPHLLQLKASGREIVLCGDVNIAHKEIDIK
NWKGNLKNSGFLPEERAWIGELFDSHGYVDVFRKLDPRPDQYTWWSNRGQAYAKNVGW
RIDYHLATPKIADTAHLCSIYKDEKFSDHAPLSIDYDFPL"
misc_feature complement(209138..209896)
/gene="exoA"
/locus_tag="CNE_1c02090"
/note="Neisseria meningitides Nape-like subfamily of the
ExoIII family purinic/apyrimidinic (AP) endonucleases;
Region: Nape_like_AP-endo; cd10281"
/db_xref="CDD:197336"
misc_feature complement(order(209159..209164,209168..209170,
209237..209242,209246..209248,209252..209254,
209258..209260,209270..209272,209276..209284,
209288..209290,209405..209407,209411..209413,
209417..209419,209447..209449,209453..209455,
209543..209545,209558..209560,209564..209566,
209573..209575,209618..209620,209702..209707,
209771..209773,209786..209788,209792..209794,
209855..209872,209876..209878))
/gene="exoA"
/locus_tag="CNE_1c02090"
/note="putative active site [active]"
/db_xref="CDD:197336"
misc_feature complement(order(209159..209161,209168..209170,
209240..209242,209246..209248,209252..209254,
209258..209260,209276..209284,209288..209290,
209405..209407,209411..209413,209417..209419,
209447..209449,209453..209455,209543..209545,
209558..209560,209564..209566,209573..209575,
209618..209620,209702..209707,209771..209773,
209786..209788,209792..209794,209855..209872,
209876..209878))
/gene="exoA"
/locus_tag="CNE_1c02090"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:197336"
misc_feature complement(order(209159..209161,209447..209449,
209453..209455,209564..209566,209573..209575,
209792..209794,209876..209878))
/gene="exoA"
/locus_tag="CNE_1c02090"
/note="putative phosphate binding site [ion binding];
other site"
/db_xref="CDD:197336"
misc_feature complement(order(209159..209164,209237..209239,
209447..209449,209453..209455,209573..209575,
209792..209794,209876..209878))
/gene="exoA"
/locus_tag="CNE_1c02090"
/note="putative catalytic site [active]"
/db_xref="CDD:197336"
misc_feature complement(order(209162..209164,209792..209794,
209870..209872))
/gene="exoA"
/locus_tag="CNE_1c02090"
/note="metal binding site A [ion binding]; metal-binding
site"
/db_xref="CDD:197336"
misc_feature complement(order(209159..209161,209240..209242,
209246..209248,209288..209290,209447..209449,
209453..209455,209564..209566,209573..209575))
/gene="exoA"
/locus_tag="CNE_1c02090"
/note="putative AP binding site [nucleotide binding];
other site"
/db_xref="CDD:197336"
misc_feature complement(order(209159..209161,209447..209449,
209453..209455))
/gene="exoA"
/locus_tag="CNE_1c02090"
/note="putative metal binding site B [ion binding]; other
site"
/db_xref="CDD:197336"
gene 209927..210613
/gene="pyrE"
/locus_tag="CNE_1c02100"
/db_xref="GeneID:10916601"
CDS 209927..210613
/gene="pyrE"
/locus_tag="CNE_1c02100"
/EC_number="2.4.2.10"
/codon_start=1
/transl_table=11
/product="orotate phosphoribosyltransferase PyrE"
/protein_id="YP_004684060.1"
/db_xref="GI:339324367"
/db_xref="GeneID:10916601"
/translation="MMTQQKPPAGADLSQTFIRFALDAGVLSFGEFVTKAGRKSPYFF
NAGLFNQGAMLGQVAQFYAKTLLASGVQFDVLFGPAYKGITLASATAVALAGMGRDVG
FAYNRKEAKDHGEGGTLVGAKLQGKVVIIDDVISAGTSVRESVNMIRAAGAEPAAVLI
ALDRMEKSGTAEQVGTHSAVQDVQREFGIPVIAIASLKDLLAYLDASQDPALGASREA
VAAYRQRYGV"
misc_feature 210098..210451
/gene="pyrE"
/locus_tag="CNE_1c02100"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(210164..210166,210170..210172,210320..210328,
210332..210346,210416..210418)
/gene="pyrE"
/locus_tag="CNE_1c02100"
/note="active site"
/db_xref="CDD:206754"
gene 210716..212023
/locus_tag="CNE_1c02110"
/db_xref="GeneID:10916602"
CDS 210716..212023
/locus_tag="CNE_1c02110"
/EC_number="3.1.-.-"
/codon_start=1
/transl_table=11
/product="esterase alpha-beta hydrolase superfamily"
/protein_id="YP_004684061.1"
/db_xref="GI:339324368"
/db_xref="GeneID:10916602"
/translation="MAAKERQERAGRQAATPSTTAESAGNGESLAERGAQVLPRKPVR
QAAKAPDRAAHEAYAVRALVLQGGGALGAYQAGVYQGLAEGGIYPNWVAGISIGALNA
AIIAGNPPQRRVEQLCAFWEYICAQPWMPSLSHTWFADHAEGWPEPMRIWFDGLHAAR
AMLEGQRGFFQPRSWPELMSRYSDPSHASFYDTTPLKATLERFADFDLINHRPDLMRV
SVGAVNVRTGNFAYFDNTRDKLCPEHFMASGALPPGFPAVEIGGEYYWDGGLVSNTPL
AEVLTAQPRRDALIFQVDLWSARGKLPHDLVDVAERQKDIQYSSRTRAITDYMREQQN
LRRMLNEVMALVPPSKRDNAWYRRAAEQACDARRNVIQLIYRDKSFENLAKDYQFGAL
TMHEHWTSGLDDIRQTLRHPQWLAMPSREHPFVTHDVHRGNGG"
misc_feature <211238..211756
/locus_tag="CNE_1c02110"
/note="Hypothetical patatin similar to Z1214 protein of
Escherichia coli; Region: Pat_hypo_Ecoli_Z1214_like;
cd07209"
/db_xref="CDD:132848"
misc_feature 211661..211981
/locus_tag="CNE_1c02110"
/note="Patatin phospholipase; Region: DUF3734; pfam12536"
/db_xref="CDD:193067"
gene complement(212038..212847)
/locus_tag="CNE_1c02120"
/db_xref="GeneID:10916603"
CDS complement(212038..212847)
/locus_tag="CNE_1c02120"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684062.1"
/db_xref="GI:339324369"
/db_xref="GeneID:10916603"
/translation="MPLDDFRITSGKRFRLADFDPGSKPLSCGKKEEDLARIIELSNA
LDAQQDIFYAEHRRKLLVVLQGMDTSGKDGTVRGVFRSFDPLGIRVVGFKAPSPEELA
RDYLWRIHLQVPKTGEIVVFNRSHYEDVLITRVHDWIDAAECERRFRQIRDFESMLTE
TGTTIVKCFLHISRDEQKARLEARLADPEKHWKFDTTDLAERKHWKAYMDAYEAAIMA
TSTPECPWYVVPADSKTHRNLMVAEILTKVFEDLKPAYPPARPELATIKVD"
misc_feature complement(212047..212841)
/locus_tag="CNE_1c02120"
/note="polyphosphate:nucleotide phosphotransferase, PPK2
family; Region: PPK2_rel_1; TIGR03709"
/db_xref="CDD:200315"
gene complement(212956..213822)
/gene="dapF"
/locus_tag="CNE_1c02130"
/db_xref="GeneID:10916604"
CDS complement(212956..213822)
/gene="dapF"
/locus_tag="CNE_1c02130"
/EC_number="5.1.1.7"
/codon_start=1
/transl_table=11
/product="diaminopimelate epimerase DapF"
/protein_id="YP_004684063.1"
/db_xref="GI:339324370"
/db_xref="GeneID:10916604"
/translation="MKLQFTKMHGAGNDFVVLDGIHQQIDLTPAQWRALASRHFGVGA
DQILIVEKPSRPDVDFRYRIVNADGSEVEHCGNGARCFVRFVTDKGMTDKRSVRVEVM
NGVITLTLQDDGQVTVDMGAPELEPARVPFRAEGLPTRAEGADTLYGLEVNGRTEWIS
AVSMGNPHAVQVVDNVENFPVLQDGPVVEHHAAFPNRVNAGFMQVQDRHTIRLRVYER
GAGETLACGTGACAAVVAGIRRGLLDSPVRVHTHGGELTIAWDGGAEPVRMTGPATTV
FEGSIDLAALPA"
misc_feature complement(212968..213822)
/gene="dapF"
/locus_tag="CNE_1c02130"
/note="diaminopimelate epimerase; Provisional; Region:
dapF; PRK00450"
/db_xref="CDD:179032"
misc_feature complement(213448..213810)
/gene="dapF"
/locus_tag="CNE_1c02130"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:201918"
misc_feature complement(212995..213342)
/gene="dapF"
/locus_tag="CNE_1c02130"
/note="Diaminopimelate epimerase; Region: DAP_epimerase;
pfam01678"
/db_xref="CDD:201918"
gene complement(213865..214758)
/gene="htrB"
/locus_tag="CNE_1c02140"
/db_xref="GeneID:10916605"
CDS complement(213865..214758)
/gene="htrB"
/locus_tag="CNE_1c02140"
/EC_number="2.3.1.-"
/codon_start=1
/transl_table=11
/product="lipid A biosynthesis lauroyl acyltransferase"
/protein_id="YP_004684064.1"
/db_xref="GI:339324371"
/db_xref="GeneID:10916605"
/translation="MSRVFTWLGIGLLTVLGKLPYPFVARFGEALGSLLYLVPSERRR
VVQANLRLCFPDRTEAEIDELSRQSFRILFRSFAERGIFWTGSEAQMRRWVQIDDQAD
LVALDGTPHILVTLHLSGVEAGAIRLTINLREHLGRSGASLYTRQKNDLFDHFLKHAR
GRFGANMISRNDSARDILRCLKKGEALQLIADMDFGERDSEFVPFFGVQALTLTSVSR
LARLTGAKVVPIYTEMLPDYQGYVLRILPPWEDYPGASVTDDTRRMNAFFEDCIRPRV
PEYYWVHKRFKHRLPGEPEIY"
misc_feature complement(213898..214746)
/gene="htrB"
/locus_tag="CNE_1c02140"
/note="Bacterial lipid A biosynthesis acyltransferase;
Region: Lip_A_acyltrans; pfam03279"
/db_xref="CDD:112109"
misc_feature complement(213898..214485)
/gene="htrB"
/locus_tag="CNE_1c02140"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature complement(order(214174..214182,214318..214329,
214393..214395,214399..214401,214408..214410))
/gene="htrB"
/locus_tag="CNE_1c02140"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene complement(214755..215774)
/locus_tag="CNE_1c02150"
/db_xref="GeneID:10916606"
CDS complement(214755..215774)
/locus_tag="CNE_1c02150"
/EC_number="2.3.1.-"
/codon_start=1
/transl_table=11
/product="lauroyl/myristoyl acyltransferase"
/protein_id="YP_004684065.1"
/db_xref="GI:339324372"
/db_xref="GeneID:10916606"
/translation="MNPDDGTLRAELNTAIEKTLPVRLFPGTDPQQTCFSRLMTFLFW
LISRFPLRLLQAAGGALGLLSARLPGRYGRRLRENFRQAFPDATEAMIDEAARSAGRM
IIEMPYFWSRSKIGAKLYGFDDYLWPELGKLQARGKGIIILTPHLGCFEVLPQSHALQ
RPVTALFKPPHQPWLRDWIEKMRTRPDMHMAPATPRGVRMLVKALKRGQAVGILPDQV
PSGGEGNWAPFFGKPAYTMALVHRLQQLTGAPVVAVFAERLPRGAGYRGHLRVINDGG
MLPDDPAAAAAVINRTIEELVRLCPTQYLWAYNRYKQPAGAGTPDAPDTPGNDTEPAA
DQSIS"
misc_feature complement(214839..215381)
/locus_tag="CNE_1c02150"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: LABLAT-like; Region:
LPLAT_LABLAT-like; cd07984"
/db_xref="CDD:153246"
misc_feature complement(order(215118..215126,215265..215276,
215322..215324,215328..215330,215337..215339))
/locus_tag="CNE_1c02150"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153246"
gene 215944..217155
/gene="metK"
/locus_tag="CNE_1c02160"
/db_xref="GeneID:10916607"
CDS 215944..217155
/gene="metK"
/locus_tag="CNE_1c02160"
/EC_number="2.5.1.6"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine synthase MetK"
/protein_id="YP_004684066.1"
/db_xref="GI:339324373"
/db_xref="GeneID:10916607"
/translation="MNRTGWHAIANLENKFVANDFLFTSESVSEGHPDKVADQISDAV
LDAILAQDKYARVAAETLCNTGLVVLAGEITTTANVDYIQIARDTIKRIGYDNTEYGI
DYKGCAVLVAYDKQSPDIAQGVDRASDDYLNQGAGDQGLMFGYACDETPELMPFPIYY
AHRLVERQSLLRRDGRLPWLRPDAKSQVTVRYVDGKPHSVDTVVLSTQHSPDITQAQI
REAVIEEIIKPVLPAEMLKETKYLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGASPH
GGGAFSGKDPSKVDRSAAYAARYVAKNVVASGLARQCQVQVSYAIGVARPINVTVYTE
GTGKIPDAKIAELVQEHFDLRPKGIVQMLDLLRPIYEKTAAYGHFGREEPEFSWEATD
KAAALRAAAGL"
misc_feature 215998..217110
/gene="metK"
/locus_tag="CNE_1c02160"
/note="S-adenosylmethionine synthetase; Validated; Region:
PRK05250"
/db_xref="CDD:179974"
misc_feature 215998..216297
/gene="metK"
/locus_tag="CNE_1c02160"
/note="S-adenosylmethionine synthetase, N-terminal domain;
Region: S-AdoMet_synt_N; pfam00438"
/db_xref="CDD:201226"
misc_feature 216340..216690
/gene="metK"
/locus_tag="CNE_1c02160"
/note="S-adenosylmethionine synthetase, central domain;
Region: S-AdoMet_synt_M; pfam02772"
/db_xref="CDD:202384"
misc_feature 216694..217110
/gene="metK"
/locus_tag="CNE_1c02160"
/note="S-adenosylmethionine synthetase, C-terminal domain;
Region: S-AdoMet_synt_C; pfam02773"
/db_xref="CDD:111646"
gene 217358..218302
/locus_tag="CNE_1c02170"
/db_xref="GeneID:10916608"
CDS 217358..218302
/locus_tag="CNE_1c02170"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684067.1"
/db_xref="GI:339324374"
/db_xref="GeneID:10916608"
/translation="MSEAPVLAPSTSTQPPAAAGQLNLIRPQPYTDWAPQVTAEERAT
LRRELEQGAVLYFPNLNFRFQPGEERFLDSRYSDGKSKNINLRADDTAVRGAQGSPQD
LADLYTLIRRYADNSELLVRTLFPEYIPHMTRAGTSLRPSEIAGRPVSWRKDDTRLHV
DSFPSNPMLGKRLLRVFHNIDPAAARVWRVGEPFGDFAQKFVPKTHGMWPGQAALMKL
LHITKRKRSEYDHRMLQLHDLAKADLDYQAKVPQQEFHFPPGSTWIVFSDQLLHAAMR
GRAMMEQTIYLAPQAISDHTHSPEAVLSRMLGRPMLVS"
misc_feature 217451..218290
/locus_tag="CNE_1c02170"
/note="3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)
hydroxylase; Region: Kdo_hydroxy; pfam11004"
/db_xref="CDD:151451"
gene complement(218303..219706)
/gene="calB"
/locus_tag="CNE_1c02180"
/db_xref="GeneID:10916609"
CDS complement(218303..219706)
/gene="calB"
/locus_tag="CNE_1c02180"
/EC_number="1.2.1.68"
/codon_start=1
/transl_table=11
/product="coniferyl aldehyde dehydrogenase CalB"
/protein_id="YP_004684068.1"
/db_xref="GI:339324375"
/db_xref="GeneID:10916609"
/translation="MREVPDLSSVFGAMHAASRRDQLPAWAVRADRLQRLRRLVTENE
AAIAAAIHADFTNRPRQETALLEVFPSLGGIDDALRHGKRWMRVRRAATGFWFRPGRS
RLVPQPLGVVGIVVPWNYPLYLTVGPLAGALAAGNRAMVKLSEYTPRFAALFAQLVPQ
HFAPDEIVVVNGDAEVASAFTALPFDHLLFTGSTAVGHHVMRAAAANLTPVTLELGGK
SPAIIGAGADLPRAVERILVGKLMNAGQTCIAPDYVLVPEDLREQLVEAARQCVGRLY
PDLARNVDYTSIISPRHFARLAALVDEASAQGATVVPLSDAQPDAQARRLPPVLLLDV
PEGITAMREEIFGPVLPVVTYRTLDEAVDYINARPRPLALYLFERDRGAIGHVMKQTV
AGGVTVNDTLFHIAQDGLPFGGVGASGMGAYHGQAGFDTFSKVKPVFHQAGLNGAGLL
KPPYGKTFETMLRLLLR"
misc_feature complement(218309..219691)
/gene="calB"
/locus_tag="CNE_1c02180"
/note="aldehyde dehydrogenase family protein; Provisional;
Region: PTZ00381"
/db_xref="CDD:185586"
misc_feature complement(218387..219685)
/gene="calB"
/locus_tag="CNE_1c02180"
/note="Coniferyl aldehyde dehydrogenase-like; Region:
ALDH_CALDH_CalB; cd07133"
/db_xref="CDD:143451"
misc_feature complement(order(218669..218671,218675..218677,
218819..218821,218828..218833,218837..218839,
219131..219133,219185..219187,219272..219274,
219350..219358))
/gene="calB"
/locus_tag="CNE_1c02180"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:143451"
misc_feature complement(order(218963..218965,218972..218974,
219065..219067,219350..219352))
/gene="calB"
/locus_tag="CNE_1c02180"
/note="catalytic residues [active]"
/db_xref="CDD:143451"
gene 220021..221700
/gene="betA1"
/locus_tag="CNE_1c02190"
/db_xref="GeneID:10916610"
CDS 220021..221700
/gene="betA1"
/locus_tag="CNE_1c02190"
/EC_number="1.1.99.1"
/codon_start=1
/transl_table=11
/product="choline dehydrogenase BetA"
/protein_id="YP_004684069.1"
/db_xref="GI:339324376"
/db_xref="GeneID:10916610"
/translation="METTFDYVIVGAGSAGCALAGRLADSGDDTIALVEAGHHDHHVL
VRTPAALAALLPRAGARNYGYETVPQPGLNGRRGYQPRGRGLGGSSSINAMIYTRGRA
ADYDAWAAAGCDGWSWDDVLPYFRRAECNERLAGSDDDPLHGGNGPLHVSDLRTPNPF
AERFIEAAQQAGFPRNDDFNGEEQEGVGWYQVTQHAGERWNAARAYLHGGNKRDRACN
GGRAHLQVLTDTQALRIVFEGRHAAGVQVVREGRRQLLRARRDVIVCAGTFGSPQLLM
VSGVGPAAHLREHGIAVVHDLPGVGANLQDHLDIVLHKRVAVPELFGVSFGGLARLVS
EMLRYRRERTGMMSSNFAEAGGFLRSRPDLPEPDLQLHFVVGMADDHMRRLNFGHGYS
CHVCVLRPRSRGEVRLASHDIRRAPLIDPQYLSDARDLDDMVAGVRIVRSIFAQPQLA
SFGGRELYSAGLRADGSDDAAVREMIREHADTIYHPVGTCRMGMDAMAVVDPQLRVRG
VEGLRVVDASVMPTLVGGNINAPAIMIGERAHDLIRYAPRVMLRVLESMEA"
misc_feature 220021..221652
/gene="betA1"
/locus_tag="CNE_1c02190"
/note="choline dehydrogenase; Validated; Region: PRK02106"
/db_xref="CDD:179368"
misc_feature 221218..221637
/gene="betA1"
/locus_tag="CNE_1c02190"
/note="GMC oxidoreductase; Region: GMC_oxred_C; pfam05199"
/db_xref="CDD:203202"
gene complement(221705..223366)
/gene="aidB"
/locus_tag="CNE_1c02200"
/db_xref="GeneID:10916611"
CDS complement(221705..223366)
/gene="aidB"
/locus_tag="CNE_1c02200"
/EC_number="1.3.99.-"
/codon_start=1
/transl_table=11
/product="acyl-CoA dehydrogenase"
/protein_id="YP_004684070.1"
/db_xref="GI:339324377"
/db_xref="GeneID:10916611"
/translation="MTEAATHRVFNQVPDLAHYNLFSTDPSLRGALDRLGGGWHAAAL
GQFGARLGEPEVQQWAADANRHTPELHTHSRTGERIDAVDFHPSWHALLGLLRSQQLQ
ALPFAQPRAGAWVARTAGYFLQAQVESGSLCPPTMTFASIPVLRKETALFAELEPRLY
ATEHDARDLPWRSKSAIMIGMGMTEKQGGSDVRANTTVARAVRGEGRGAEYALTGHKW
FFSAPMCDAHLVVARMGAEDGPLSCFFVPRFRDDGSKNAVLIQRLKDKLGNRSNSSSE
VEFRDATGILIGEEGRGIPTIIEMATSTRLDCVIGSAAILRAAFVQALHHARHRSAFG
RLLADQPLMRNVLADLALESEAATLLMMELGHAFEHADDDPLAAAWKRVVTPAAKFWV
CKRTLEATGEAMEVWGGNGYVEEGPMARLYREAPVNSIWEGSGNIMCLDVLRAIQRNP
DDAARLLQDLSRRAGGHPAVRAELASLQAMLHENPELLEANARRFAQGLVLTAQAALM
LAHADTENAELFVASRLGRQHGRVFGTLDADADVLKRVFSRGFEG"
misc_feature complement(221717..223351)
/gene="aidB"
/locus_tag="CNE_1c02200"
/note="isovaleryl CoA dehydrogenase; Provisional; Region:
PRK11561"
/db_xref="CDD:183199"
misc_feature complement(222023..223303)
/gene="aidB"
/locus_tag="CNE_1c02200"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
misc_feature complement(order(222059..222061,222065..222067,
222071..222079,222704..222706,222710..222712,
222818..222820,222824..222826,222947..222949))
/gene="aidB"
/locus_tag="CNE_1c02200"
/note="active site"
/db_xref="CDD:173838"
gene complement(223516..223656)
/locus_tag="CNE_1c02210"
/db_xref="GeneID:10916612"
CDS complement(223516..223656)
/locus_tag="CNE_1c02210"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684071.1"
/db_xref="GI:339324378"
/db_xref="GeneID:10916612"
/translation="MKLPTPVLAGSGSKGLSQPHGPSVRHPCFIQRGEFKHKPPAGAS
AN"
gene 223768..225648
/gene="thiC"
/locus_tag="CNE_1c02220"
/db_xref="GeneID:10916613"
CDS 223768..225648
/gene="thiC"
/locus_tag="CNE_1c02220"
/EC_number="4.-.-.-"
/codon_start=1
/transl_table=11
/product="phosphomethylpyrimidine synthase ThiC"
/protein_id="YP_004684072.1"
/db_xref="GI:339324379"
/db_xref="GeneID:10916613"
/translation="MARTAPAASFESLESDLDQKFAYPASSKTYLTGSRPDIRVPLRT
ILQTSTRTDKGEMSNPPIPVYDTSGPYSDPDVHIDLKAGLPALRAKWIDERGDTEVLK
GLSSEYGRDRANDPATAHLRFAQLTNPRRAKAGANVSQMHYARKGIITPEMEYVALRE
SLNLQALYDKPEYKALLRQHPGNALGAGLPLRPEDITPEFVRQEIASGRAIIPANINH
TELEPMAIGRNFRVKINGNLGNSAVTSSLAEEVEKMVWSIRWGADTIMDLSTGKHIHE
TREWILRNSPVPIGTVPIYQALDKTGGIAEDLTWEMFRDTLIEQAEQGVDYFTIHAGV
LLRYVPLTADRVTGIVSRGGSIMAKWCLAHHKENFLYTHFDEICEIMKAYDVSFSLGD
GLRPGCIADSNDDAQFGELRTLGELTAKAWEHDVQVMIEGPGHVPLQRIQANMDEELK
HCYEAPFYTLGPLVTDIAPGYDHITSGIGAANIGWMGTAMLCYVTPKEHLGLPDKEDV
REGIITYKIAAHAADLAKGWPGAQLRDNALSKARFEFRWEDQFNLGLDPERARSYHDA
TLPAEGAKIAHFCSMCGPKFCSMKITQEVRDYAASLPKEAKQGMEEKSIEFLKKGSKI
YS"
misc_feature 223822..225642
/gene="thiC"
/locus_tag="CNE_1c02220"
/note="thiamine biosynthesis protein ThiC; Provisional;
Region: PRK09284"
/db_xref="CDD:181756"
misc_feature 223831..224064
/gene="thiC"
/locus_tag="CNE_1c02220"
/note="ThiC-associated domain; Region: ThiC-associated;
pfam13667"
/db_xref="CDD:205844"
misc_feature 224182..225555
/gene="thiC"
/locus_tag="CNE_1c02220"
/note="ThiC family; Region: ThiC; pfam01964"
/db_xref="CDD:202065"
gene 225787..226980
/gene="thiO"
/locus_tag="CNE_1c02230"
/db_xref="GeneID:10916614"
CDS 225787..226980
/gene="thiO"
/locus_tag="CNE_1c02230"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis oxidoreductase ThiO"
/protein_id="YP_004684073.1"
/db_xref="GI:339324380"
/db_xref="GeneID:10916614"
/translation="MTAVQSFDVAILGAGLAGRLAAWQLVRSGARVALVERAGPDGAG
SAAYVAAAMLAPLAESAIAERRIVDLGIASVDLWRAWLAELPEPVFFQEDGTLVVWHA
RDRAEMSLFTSRVRAVAPPELVSQRLRALDGKGVGEVEPALAGRFPQGLLLAGEGQLD
NRGALRALLSCAVSEGVHCVWEAGEVDAESLPKLGIRADVVLDCRGLGARASWPAQPG
GTQPGLRGLRGEVVRVHAPDVRLHRPVRLLHPRYPIYIAPKPNDLYVIGATELESEDD
SPMSVRSALELLSAAHSLHPAFGEARVLELNVQRRPTRPDHLPAIRVDQRARVVRVNG
LYRHGFLIAPAVTEAACAVVGALLKGDPAAHAVPAALRWPGMIEAVTEAPAATTMAAP
GGLLH"
misc_feature 225853..226848
/gene="thiO"
/locus_tag="CNE_1c02230"
/note="glycine oxidase ThiO; Region: thiamin_ThiO;
TIGR02352"
/db_xref="CDD:162817"
gene 226984..227190
/gene="thiS"
/locus_tag="CNE_1c02240"
/db_xref="GeneID:10916615"
CDS 226984..227190
/gene="thiS"
/locus_tag="CNE_1c02240"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis sulfur transfer protein
ThiS"
/protein_id="YP_004684074.1"
/db_xref="GI:339324381"
/db_xref="GeneID:10916615"
/translation="MTDMEILLNGRPLALADSATLADAVSAAQIAPPFAAAVNGQFVP
RGAHANTLLAAGDRIDLVQPVTGG"
misc_feature <227098..227187
/gene="thiS"
/locus_tag="CNE_1c02240"
/note="ThiaminS ubiquitin-like sulfur carrier protein;
Region: ThiS; cd00565"
/db_xref="CDD:176353"
misc_feature order(227107..227109,227161..227169)
/gene="thiS"
/locus_tag="CNE_1c02240"
/note="thiS-thiF/thiG interaction site; other site"
/db_xref="CDD:176353"
gene 227194..228030
/gene="thiG"
/locus_tag="CNE_1c02250"
/db_xref="GeneID:10916616"
CDS 227194..228030
/gene="thiG"
/locus_tag="CNE_1c02250"
/EC_number="4.-.-.-"
/codon_start=1
/transl_table=11
/product="thiazole synthase ThiG"
/protein_id="YP_004684075.1"
/db_xref="GI:339324382"
/db_xref="GeneID:10916616"
/translation="MTFEPSETLRDPFVLYGESFGSRLLLGTARYPSPATLEAAVQAS
RPAMITVALRRQGAVGAGEGGQAFWQMLKALDVPVLPNTAGCFTAQEVITTAMMAREV
FETPWIKLELIGDDYTLQPDTLNLPAVAETLIKEGFKVLPYCTEDLVLCRRLLDVGCQ
ALMPWAAPIGTGRGAVNPHAMRVLRERLPDTPLIVDAGLGLPSHAAQVLEWGYDGVLL
NTAVAQAAYPVNMARAFAQAVEAGRTAYLAGPMPEREVAQASTPVVGMPFWHADSTEQ
RA"
misc_feature 227230..227982
/gene="thiG"
/locus_tag="CNE_1c02250"
/note="Thiazole synthase (ThiG) is the tetrameric enzyme
that is involved in the formation of the thiazole moiety
of thiamin pyrophosphate, an essential ubiquitous cofactor
that plays an important role in carbohydrate and amino
acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728"
/db_xref="CDD:73390"
misc_feature order(227347..227349,227386..227388,227401..227403)
/gene="thiG"
/locus_tag="CNE_1c02250"
/note="ThiS interaction site; other site"
/db_xref="CDD:73390"
misc_feature order(227518..227520,227524..227526,227779..227781)
/gene="thiG"
/locus_tag="CNE_1c02250"
/note="putative active site [active]"
/db_xref="CDD:73390"
misc_feature order(227533..227535,227542..227544,227551..227559,
227626..227628,227632..227640,227647..227652,
227704..227712,227719..227721,227737..227739,
227749..227751,227794..227802,227812..227814,
227821..227826,227851..227853,227866..227874,
227881..227886,227893..227895,227914..227916,
227923..227928,227932..227946,227950..227955,
227959..227961,227965..227973,227977..227979)
/gene="thiG"
/locus_tag="CNE_1c02250"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:73390"
gene 228027..229163
/gene="thiE"
/locus_tag="CNE_1c02260"
/db_xref="GeneID:10916617"
CDS 228027..229163
/gene="thiE"
/locus_tag="CNE_1c02260"
/EC_number="2.5.1.3"
/codon_start=1
/transl_table=11
/product="thiamine-phosphate pyrophosphorylase ThiE"
/protein_id="YP_004684076.1"
/db_xref="GI:339324383"
/db_xref="GeneID:10916617"
/translation="MTRRAVHAASDGPLRQAVLEHYGETFGVDDKPWQAWRLADAPAQ
PGAHDVLLFDGEADAGTIARLAAAGATLIETDREGGQWIDTVRSPMGTWVFSVAADTD
QPHSPAFVAVLLASLSLHFPAHDALCLSRAWEPGSADWPSDFARFPHVRHAALAAPEQ
AAAPFAPCPALGLYVVVPSAEWIERLAPLNVPTVQLRFKSDDPAEVRAEIARAAKAMQ
GSSSRLFVNDHWQAAIDYRAANGGEHSGIYGIHLGQEDLDDADLDAIRASGLRLGVST
HGYAEMLRVAAIRPSYLALGAIFPTTTKVMPTQPQGMGRFRAYVKLMQPVIPSLVGIG
GVNVANMREVLAVGVGSAAVVRAVTEADDVPAAVAHLVSLFPAA"
misc_feature 228543..229145
/gene="thiE"
/locus_tag="CNE_1c02260"
/note="Thiamine monophosphate synthase (TMP
synthase)/TenI. TMP synthase catalyzes an important step
in the thiamine biosynthesis pathway, the substitution of
the pyrophosphate of 2-methyl-4-amino-5-
hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-;
Region: TMP_TenI; cd00564"
/db_xref="CDD:73367"
misc_feature order(228546..228548,228552..228554,228609..228611,
228615..228617,228777..228779,228849..228851,
228900..228902,228906..228908,228927..228929,
228933..228935,229017..229019,229029..229031,
229083..229094)
/gene="thiE"
/locus_tag="CNE_1c02260"
/note="thiamine phosphate binding site [chemical binding];
other site"
/db_xref="CDD:73367"
misc_feature order(228609..228611,228615..228617,228621..228623,
228705..228710,228792..228794,228849..228851,
228927..228929,228933..228938,229029..229031,
229089..229094)
/gene="thiE"
/locus_tag="CNE_1c02260"
/note="active site"
/db_xref="CDD:73367"
misc_feature order(228615..228617,228621..228623,228705..228710,
228783..228785,228792..228794,228849..228851,
228936..228938)
/gene="thiE"
/locus_tag="CNE_1c02260"
/note="pyrophosphate binding site [ion binding]; other
site"
/db_xref="CDD:73367"
gene 229178..229696
/locus_tag="CNE_1c02270"
/db_xref="GeneID:10916618"
CDS 229178..229696
/locus_tag="CNE_1c02270"
/EC_number="2.3.1.-"
/codon_start=1
/transl_table=11
/product="GNAT family acetyltransferase"
/protein_id="YP_004684077.1"
/db_xref="GI:339324384"
/db_xref="GeneID:10916618"
/translation="MAPTAAAHRVRLAVADDLARLPEIELAAAALFPDADLPALLRLV
STPESALAAAQRERRLWVAERGGELAGFALASRKGECGYLDEMDVHPDHGRRGIGRLL
VGAVQGWARADGLRSLNLTTFAHLPWNAPFYASLGFRQLRDDELCPLLADALAAQRAA
GLRQRVAMRQIF"
misc_feature 229355..229540
/locus_tag="CNE_1c02270"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(229436..229444,229472..229477)
/locus_tag="CNE_1c02270"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 229750..229974
/locus_tag="CNE_1c02280"
/db_xref="GeneID:10916619"
CDS 229750..229974
/locus_tag="CNE_1c02280"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684078.1"
/db_xref="GI:339324385"
/db_xref="GeneID:10916619"
/translation="MLAIRLPEDIEDRLEALAKRTGRTKTFYAREAIMQHLDDLEDLY
LADKIAARVRAGEESTVTLDELEARLGLAD"
misc_feature 229756..229971
/locus_tag="CNE_1c02280"
/note="Ribbon-helix-helix protein, copG family; Region:
RHH_1; cl15783"
/db_xref="CDD:210183"
gene 229958..230227
/locus_tag="CNE_1c02290"
/db_xref="GeneID:10916620"
CDS 229958..230227
/locus_tag="CNE_1c02290"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684079.1"
/db_xref="GI:339324386"
/db_xref="GeneID:10916620"
/translation="MAWRIEVTQTAEKQLAKLDRPVARRIVTFLREQVAASDDPRSLG
EALKGSELGEYWKYRVGDWRLICQIEDARITVVVLRLGNRRDVYR"
misc_feature 229958..230224
/locus_tag="CNE_1c02290"
/note="Cytotoxic translational repressor of
toxin-antitoxin stability system [Translation, ribosomal
structure and biogenesis / Cell division and chromosome
partitioning]; Region: RelE; COG2026"
/db_xref="CDD:32209"
gene 230333..230785
/locus_tag="CNE_1c02300"
/db_xref="GeneID:10916621"
CDS 230333..230785
/locus_tag="CNE_1c02300"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684080.1"
/db_xref="GI:339324387"
/db_xref="GeneID:10916621"
/translation="MSSQTAPEIVPVAPGTPEKPYFGIDVPLMRYFGLQPVQIEEGLC
RTRLPAHPSLVNSRGDVHGGTLMATLDFTLSGAARSHAPLETGVITIDMSTHFLAAAR
GELTLEARCLRRGARIAFCEGEVKDAAGTVVCVARAAFKLVPLSAGGN"
misc_feature 230429..230758
/locus_tag="CNE_1c02300"
/note="PaaI_thioesterase is a tetrameric acyl-CoA
thioesterase with a hot dog fold and one of several
proteins responsible for phenylacetic acid (PA)
degradation in bacteria. Although orthologs of PaaI exist
in archaea and eukaryotes, their function has not...;
Region: PaaI_thioesterase; cd03443"
/db_xref="CDD:48038"
misc_feature order(230513..230515,230600..230602,230621..230632)
/locus_tag="CNE_1c02300"
/note="CoenzymeA binding site [chemical binding]; other
site"
/db_xref="CDD:48038"
misc_feature order(230516..230518,230522..230524,230531..230533,
230603..230617,230621..230623)
/locus_tag="CNE_1c02300"
/note="subunit interaction site [polypeptide binding];
other site"
/db_xref="CDD:48038"
misc_feature order(230519..230521,230543..230548,230555..230560,
230600..230602)
/locus_tag="CNE_1c02300"
/note="PHB binding site; other site"
/db_xref="CDD:48038"
gene complement(230807..231241)
/locus_tag="CNE_1c02310"
/db_xref="GeneID:10916622"
CDS complement(230807..231241)
/locus_tag="CNE_1c02310"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684081.1"
/db_xref="GI:339324388"
/db_xref="GeneID:10916622"
/translation="MTMLADIDLRSDPEAAFYLKHEIVDVLFATEPGELISREGPNRY
QPGDALITSRGGDRWCVSRDRFDPKYEAVPPLAHGQDGAYRNKPIPVLAREMHEAFSI
ARSAGGDVLHGKPGDWLMQYAPGDYGITERARFEQVYRPLQD"
misc_feature complement(230822..231124)
/locus_tag="CNE_1c02310"
/note="PGDYG protein; Region: PGDYG; pfam14083"
/db_xref="CDD:206253"
gene complement(231247..232119)
/gene="thiD"
/locus_tag="CNE_1c02320"
/db_xref="GeneID:10916623"
CDS complement(231247..232119)
/gene="thiD"
/locus_tag="CNE_1c02320"
/EC_number="2.7.1.49"
/EC_number="2.7.4.7"
/codon_start=1
/transl_table=11
/product="hydroxymethylpyrimidine/phosphomethylpyrimidine
kinase ThiD"
/protein_id="YP_004684082.1"
/db_xref="GI:339324389"
/db_xref="GeneID:10916623"
/translation="MPGRLAHRLPPIPAQMIPTPPRTLTIAGSDSGGGAGIQADLKTF
SALGCFGMSAITAITAQNTLGVTGVHAIPADMVAAQIDAVASDIGVDAAKTGMLGTAA
IVEAVAAAADRHGIRKLVVDPVMISTSGATLSDDATTQAMVRLLFPRALLVTPNLPEA
SYLLGRRIARRAEMEQAAADLIAMGCPAVLLKGGHLEDGAAAGGLDDLLMLADGSVRV
FTHPRVDTRNLHGTGCTLAAAIAAQLARGDALEAAVGTALDYVAQAIAAGAGLRLGAG
NGPLNHLFAPRALG"
misc_feature complement(231337..231999)
/gene="thiD"
/locus_tag="CNE_1c02320"
/note="4-amino-5-hydroxymethyl-2-methyl-pyrimidine
phosphate kinase (HMPP-kinase) catalyzes two consecutive
phosphorylation steps in the thiamine phosphate
biosynthesis pathway, leading to the synthesis of vitamin
B1. The first step is the phosphorylation of...; Region:
HMPP_kinase; cd01169"
/db_xref="CDD:29353"
misc_feature complement(order(231868..231873,231883..231885,
231892..231894,231901..231906,231910..231912,
231916..231921,231934..231948,231955..231957,
231961..231978,231985..231987,231994..231999))
/gene="thiD"
/locus_tag="CNE_1c02320"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29353"
misc_feature complement(order(231418..231420,231829..231831,
231937..231939))
/gene="thiD"
/locus_tag="CNE_1c02320"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29353"
misc_feature complement(order(231421..231423,231427..231429,
231544..231546,231643..231645,231754..231756))
/gene="thiD"
/locus_tag="CNE_1c02320"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29353"
gene 232371..233789
/gene="ahcY"
/locus_tag="CNE_1c02330"
/db_xref="GeneID:10916624"
CDS 232371..233789
/gene="ahcY"
/locus_tag="CNE_1c02330"
/EC_number="3.3.1.1"
/codon_start=1
/transl_table=11
/product="adenosylhomocysteinase"
/protein_id="YP_004684083.1"
/db_xref="GI:339324390"
/db_xref="GeneID:10916624"
/translation="MNAVTDLKQDYLVADINLAGWGRKEIAIAETEMPGLMAIRDEFA
AAQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIYSTQDHAAAAIAAGGTP
VFAFKGESLKEYWDFTHRIFDWSDGGTPNMILDDGGDATLLLHLGARAEKDASLIAKP
GSEEETYLFAAIKEKLAKDPSWYSRNLEAIRGVTEETTTGVHRLYQMAQKGELRFPAI
NVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKVAIVAGYGDVGKGSAQALRALS
AQVWVTEIDPICALQAAMEGYRVVTMDYAAEHGDIFVTCTGNYHVITHDHMAKMKDQA
IVCNIGHFDNEIDIASIEKYEWDEIKPQVDHVKFPDGKKLIILAKGRLVNLGCATGHP
SYVMSSSFANQTIAQIELWQERDSGKYPVGVYTLPKHLDEKVARLQLRKLNAQLTELT
EQQAAYIGVKKEGPYKADHYRY"
misc_feature 232383..233768
/gene="ahcY"
/locus_tag="CNE_1c02330"
/note="S-adenosyl-L-homocysteine hydrolase; Provisional;
Region: PRK05476"
/db_xref="CDD:180110"
misc_feature 232416..233762
/gene="ahcY"
/locus_tag="CNE_1c02330"
/note="S-adenosyl-L-homocysteine hydrolase (AdoHycase)
catalyzes the hydrolysis of S-adenosyl-L-homocysteine
(AdoHyc) to form adenosine (Ado) and homocysteine (Hcy).
The equilibrium lies far on the side of AdoHyc synthesis,
but in nature the removal of Ado and...; Region:
AdoHcyase; cd00401"
/db_xref="CDD:29522"
misc_feature order(232440..232442,232461..232466,232974..232976,
232983..232988,233034..233036,233040..233042,
233055..233057,233067..233069,233076..233081,
233100..233105,233112..233114,233118..233132,
233193..233198,233217..233243,233247..233258,
233265..233270,233319..233330,233361..233369,
233400..233402,233442..233444,233535..233537,
233553..233555,233643..233645,233685..233687,
233694..233699,233703..233711,233715..233717,
233724..233729,233736..233741)
/gene="ahcY"
/locus_tag="CNE_1c02330"
/note="oligomerization interface [polypeptide binding];
other site"
/db_xref="CDD:29522"
misc_feature order(232545..232547,232551..232553,232557..232559,
232776..232778,232956..232961,233046..233048,
233058..233060,233541..233543)
/gene="ahcY"
/locus_tag="CNE_1c02330"
/note="active site"
/db_xref="CDD:29522"
misc_feature order(232959..232967,233061..233063,233148..233150,
233154..233162,233214..233222,233313..233318,
233331..233333,233385..233393,233514..233516,
233520..233522,233541..233543)
/gene="ahcY"
/locus_tag="CNE_1c02330"
/note="NAD+ binding site [chemical binding]; other site"
/db_xref="CDD:29522"
gene 233861..234211
/locus_tag="CNE_1c02340"
/db_xref="GeneID:10916625"
CDS 233861..234211
/locus_tag="CNE_1c02340"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684084.1"
/db_xref="GI:339324391"
/db_xref="GeneID:10916625"
/translation="MRLLVVWVINAVALFVLPYLISSIHIKSFGSAMLAALVLGLVNT
LIRPILVILTLPVTLLTLGLFIFVINALLFLFVGNLLSGFTVGGFWAALLGSILYSVI
SWLLASLLLGERTA"
misc_feature 233861..234178
/locus_tag="CNE_1c02340"
/note="Membrane protein of unknown function; Region:
DUF360; pfam04020"
/db_xref="CDD:202855"
gene 234273..235103
/gene="metF"
/locus_tag="CNE_1c02350"
/db_xref="GeneID:10916626"
CDS 234273..235103
/gene="metF"
/locus_tag="CNE_1c02350"
/EC_number="1.5.1.20"
/codon_start=1
/transl_table=11
/product="5,10-methylenetetrahydrofolate reductase"
/protein_id="YP_004684085.1"
/db_xref="GI:339324392"
/db_xref="GeneID:10916626"
/translation="MQDRYFSFEFFPPKTAEGTEKLRNTRAQLAPLKPKYISVTFGAG
GTTQQGTLDAVLEIQREGIEAAPHLSCVGSSCESIRAVLQQYRDGGIRHIVALRGDMP
SGMGEIGEFRYANELVEFIRAETGDWFNIEVAAYPEYHPQAKSPRHDLDNFVRKVKAG
ADSAITQYFYNADAYFRFVDDVRAQGVEVPIVPGIMPITNYSQLMRFSEMCGAEVPRW
VAKRLESFGDDRESIRAFGLDVVTALCERLLAAGVPGLHFYTLNAAGATKAIWQRLKL
"
misc_feature 234288..235097
/gene="metF"
/locus_tag="CNE_1c02350"
/note="Methylenetetrahydrofolate reductase; Region: MTHFR;
pfam02219"
/db_xref="CDD:145399"
misc_feature 234288..235094
/gene="metF"
/locus_tag="CNE_1c02350"
/note="Methylenetetrahydrofolate reductase (MTHFR).
5,10-Methylenetetrahydrofolate is reduced to
5-methyltetrahydrofolate by methylenetetrahydrofolate
reductase, a cytoplasmic, NAD(P)-dependent enzyme.
5-methyltetrahydrofolate is utilized by methionine
synthase...; Region: MTHFR; cd00537"
/db_xref="CDD:29637"
misc_feature order(234393..234395,234474..234476,234561..234569,
234609..234614,234672..234674,234678..234680,
234690..234692,234696..234698,234717..234719,
234726..234728,234735..234740,234765..234767,
234771..234773,235047..235049)
/gene="metF"
/locus_tag="CNE_1c02350"
/note="FAD binding site [chemical binding]; other site"
/db_xref="CDD:29637"
gene 235112..235471
/locus_tag="CNE_1c02360"
/db_xref="GeneID:10916627"
CDS 235112..235471
/locus_tag="CNE_1c02360"
/codon_start=1
/transl_table=11
/product="competence-specific genes regulator"
/protein_id="YP_004684086.1"
/db_xref="GI:339324393"
/db_xref="GeneID:10916627"
/translation="MATRRPDPFIEHLLELMGPLAARIGPVSARRMFGGHGLFYDGLM
FALVSGGTCYLKADDATRGKFEAEGSEPFRYQSAKREVTMRHYLSLPPAALESPGAMT
PWAKLAVEAALRLGNAG"
misc_feature 235169..235450
/locus_tag="CNE_1c02360"
/note="TfoX N-terminal domain; Region: TfoX_N; pfam04993"
/db_xref="CDD:147262"
gene 235523..236281
/locus_tag="CNE_1c02370"
/db_xref="GeneID:10916628"
CDS 235523..236281
/locus_tag="CNE_1c02370"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684087.1"
/db_xref="GI:339324394"
/db_xref="GeneID:10916628"
/translation="MVTATFRFYEELNDFLAPDQRRRDLSCACARAATVKHMIEALGV
PHTEVELILVNGESSGFERQLRDGDRVSVYPKFERLDVSPLLRVREQPLRVMRFVADA
HLGGLAHLLRMTGFDTLYDNHFEDSEIERIAVDQGRVVLTRDRELLKRRGITHGCYVR
AIKSQLQVREIFARLDLARSARPFSLCLDCNAPLRALDAAGAAGRVPEGVLERHRSFV
TCDQCRRVFWEGSHWRCMRALVDELVRGAEAGPG"
misc_feature 235523..235765
/locus_tag="CNE_1c02370"
/note="Ub domain fused to Mut7-C; Region: Ub-Mut7C;
pfam14451"
/db_xref="CDD:206617"
misc_feature 235796..236257
/locus_tag="CNE_1c02370"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1656"
/db_xref="CDD:31842"
misc_feature 235808..236242
/locus_tag="CNE_1c02370"
/note="Protein of unknown function DUF82; Region: DUF82;
pfam01927"
/db_xref="CDD:145218"
gene complement(236441..237025)
/locus_tag="CNE_1c02380"
/db_xref="GeneID:10916629"
CDS complement(236441..237025)
/locus_tag="CNE_1c02380"
/EC_number="6.3.3.2"
/codon_start=1
/transl_table=11
/product="5-formyltetrahydrofolate cyclo-ligase"
/protein_id="YP_004684088.1"
/db_xref="GI:339324395"
/db_xref="GeneID:10916629"
/translation="MSSTPVTTAPNPAADDRRALRTQLLAQRAALPARAEADARIAAA
LSGLLAGLAVRCLGFYWPIQQEFDARDAVGRWLAAMPGRSAALPSVSRPGAPLDFHLW
TPDTPMATGHYGIPVPDGTEAVTPDALLIPCVGFSPDKFRLGYGGGFYDRTLAAMAQR
PVAIGIGYESCRLPLQAQPHDIAMDWIVTESGQF"
misc_feature complement(236456..>236863)
/locus_tag="CNE_1c02380"
/note="5,10-methenyltetrahydrofolate synthetase; Region:
MTHFS_bact; TIGR02727"
/db_xref="CDD:211761"
gene 237132..239084
/gene="slt"
/locus_tag="CNE_1c02390"
/db_xref="GeneID:10916630"
CDS 237132..239084
/gene="slt"
/locus_tag="CNE_1c02390"
/EC_number="3.2.1.147"
/codon_start=1
/transl_table=11
/product="lytic murein transglycosylase"
/protein_id="YP_004684089.1"
/db_xref="GI:339324396"
/db_xref="GeneID:10916630"
/translation="MLKGVYLQRAGRAAWIALACALLVTPVHAQKRPQAVSRPQAAVI
PSDPDEAFTALREAARKNDVERAYAISATLVDYPVPSYVEYFRIKPQLFDASGLARID
APDDQVRAFLQRYKGDAIADRMRNDWLLVLGKKRDWANFDVEYPQFALKDDTQVECYA
LLSRALKGQNVAADARNVLSDPKYYGEGCVDLIGYLAQSQQIQRSDVAYQARLALEQN
FVTLAGKIAALVPDARADGDTLATVVKMARNDPSQAAAYLGTAQGALSRDEQGAAWGV
IGQFAAKKLLPDAAGFYRRQMDLGGNQWLSDDTQEWRVRAALRQGDWKQVRQAVELMR
PELRAKDPAWIYWYGRALKADGRDTEAQQNFQQIAGQFNFYGQLASEELGNRITLPAR
TTVSDAEAMAMRTRAGFQRAQKFYAMNLRFEGNREWNWELRNMSDRELLAAAEYARRL
ELLDRTVNSADRTRNEHDFTLRFLMPYRDIMQRATDDVGLDMAWVYGLIRQESRFLMN
ARSSAGAHGLMQVMPATAKYVARKIGMADFSPSMMADPNINILLGTNYLNMVLTDLDS
SWTLASAAYNAGPGRPKAWRSTLARPVEGAIFAETIPFNETRGYVKNVLSNATYYAAL
MSGRPQSLKSRLGMVAPSAVTTTSLP"
misc_feature 237348..239027
/gene="slt"
/locus_tag="CNE_1c02390"
/note="lytic murein transglycosylase; Provisional; Region:
PRK11619"
/db_xref="CDD:183236"
misc_feature 238608..238985
/gene="slt"
/locus_tag="CNE_1c02390"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs catalyze...; Region:
LT_GEWL; cd00254"
/db_xref="CDD:29556"
misc_feature order(238635..238637,238695..238697,238797..238799,
238854..238856)
/gene="slt"
/locus_tag="CNE_1c02390"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:29556"
misc_feature 238635..238637
/gene="slt"
/locus_tag="CNE_1c02390"
/note="catalytic residue [active]"
/db_xref="CDD:29556"
gene 239191..240213
/locus_tag="CNE_1c02400"
/db_xref="GeneID:10916631"
CDS 239191..240213
/locus_tag="CNE_1c02400"
/EC_number="5.1.3.-"
/codon_start=1
/transl_table=11
/product="nucleoside-diphosphate-sugar epimerase"
/protein_id="YP_004684090.1"
/db_xref="GI:339324397"
/db_xref="GeneID:10916631"
/translation="MQTSNVLVIGGAGFIGSHLVSRLAGAASASGAPLEPGANPDSPI
APDRIVVGARNIEHAQHLLLLPRVEVVELGLADNAALDDAIGSLGVDGIVVNLVGVLH
GERADPYGEAFASAHVEMVRQIAASCLSTGVRRLLHMSALGADSNGPSMYLRSKGDGE
RVVRASGLDWTIFRPSVVFGPDDHFLNLFAHMQQMAPVVPLACAHARFQPVFVQDVVQ
AYLNAMVNPATIGHGYELGGPQVYTLEELVRFAGRASGHPRPVIALPDALARVQASIM
EHMPGEPLLSRDNLDSMQLDNVLEHPVAPELNLHPASLESIMTDALAGRNRDTTLTHM
RASVHR"
misc_feature 239203..240081
/locus_tag="CNE_1c02400"
/note="NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs;
Region: NDUFA9_like_SDR_a; cd05271"
/db_xref="CDD:187579"
misc_feature 239206..239901
/locus_tag="CNE_1c02400"
/note="NAD dependent epimerase/dehydratase family; Region:
Epimerase; pfam01370"
/db_xref="CDD:201754"
misc_feature order(239218..239220,239224..239235,239347..239355,
239479..239487,239536..239538,239605..239613,
239644..239646,239656..239658,239713..239724)
/locus_tag="CNE_1c02400"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:187579"
misc_feature order(239644..239646,239656..239658)
/locus_tag="CNE_1c02400"
/note="active site"
/db_xref="CDD:187579"
gene 240399..241097
/locus_tag="CNE_1c02410"
/db_xref="GeneID:10916632"
CDS 240399..241097
/locus_tag="CNE_1c02410"
/EC_number="2.5.1.18"
/codon_start=1
/transl_table=11
/product="glutathione S-transferase"
/protein_id="YP_004684091.1"
/db_xref="GI:339324398"
/db_xref="GeneID:10916632"
/translation="MKLVIGNKNYSSWSLRPWLLLRQAGIDFEEVQVRLFTGSFAAEI
ARYSPAGKVPALVDGEVTVWDSLAISEYLAERFPEKHLWPADRAQRAVARAVCAEMHS
GFGNLRNQLPMNVTAVLPGRGWNVAVQRDVERIAAIWEGLRQQHGANGPFLFGEFTVA
DAFFAPVVSRFATYGIHLPDEAEDAKAYADFMLALPAMQEWIAGAREERDFLADDEPY
RLAPDRPDAIIINH"
misc_feature 240402..240620
/locus_tag="CNE_1c02410"
/note="GST_N family, unknown subfamily 1; composed of
uncharacterized proteins, predominantly from bacteria,
with similarity to GSTs. GSTs are cytosolic dimeric
proteins involved in cellular detoxification by catalyzing
the conjugation of glutathione (GSH) with...; Region:
GST_N_1; cd03043"
/db_xref="CDD:48592"
misc_feature order(240435..240437,240441..240446,240450..240455,
240462..240467,240597..240599,240606..240611)
/locus_tag="CNE_1c02410"
/note="putative C-terminal domain interface [polypeptide
binding]; other site"
/db_xref="CDD:48592"
misc_feature order(240435..240437,240552..240560,240591..240596)
/locus_tag="CNE_1c02410"
/note="putative GSH binding site (G-site) [chemical
binding]; other site"
/db_xref="CDD:48592"
misc_feature 240468..241031
/locus_tag="CNE_1c02410"
/note="Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones]; Region: Gst;
COG0625"
/db_xref="CDD:30970"
misc_feature order(240552..240554,240588..240593,240597..240602,
240609..240611)
/locus_tag="CNE_1c02410"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:48592"
misc_feature 240693..241010
/locus_tag="CNE_1c02410"
/note="C-terminal, alpha helical domain of an unknown
subfamily 3 of Glutathione S-transferases; Region:
GST_C_3; cd03194"
/db_xref="CDD:198303"
misc_feature order(240699..240704,240711..240716,240897..240899,
240906..240908)
/locus_tag="CNE_1c02410"
/note="putative substrate binding pocket (H-site)
[chemical binding]; other site"
/db_xref="CDD:198303"
misc_feature order(240873..240875,240882..240887,240894..240896,
240906..240908)
/locus_tag="CNE_1c02410"
/note="putative N-terminal domain interface [polypeptide
binding]; other site"
/db_xref="CDD:198303"
gene 241154..242389
/gene="cca"
/locus_tag="CNE_1c02420"
/db_xref="GeneID:10916633"
CDS 241154..242389
/gene="cca"
/locus_tag="CNE_1c02420"
/EC_number="2.7.7.72"
/codon_start=1
/transl_table=11
/product="tRNA nucleotidyltransferase Cca"
/protein_id="YP_004684092.1"
/db_xref="GI:339324399"
/db_xref="GeneID:10916633"
/translation="MQVYAVGGAIRDELLGKPSQDRDYVVVGATPAQMEAAGFRPVGK
DFPVFLHPRTQEEYALARTERKTAMGYKGFAFYCEPDVTLEDDLVRRDLTINAMARAV
DADGNLAGPVIDPHGGQRDLAARLFRHVSDAFAEDPVRILRLARFAARFQDFTVAAET
MRLMREMVAAGEVDALVPERVWQELARGLMEARPSRMFEVLRECGALARLLPELDRLW
GVPQRADYHPEVDTGVHVMMVIDCAAALGAPLPVRFAALVHDLGKGTTPEDVLPRHTG
HEMRSVKLLEAVCARLRVPNDCRDLAVVVAREHGNIHRSLEFSAAAVVRLLERCDALR
KPARFAEALQACEADMRGRKGFEASAYPQAARLLAALDAAAAVDAGAVARACGDDVSQ
IRDRVHAARVAAVAQRLGC"
misc_feature 241154..242242
/gene="cca"
/locus_tag="CNE_1c02420"
/note="multifunctional tRNA nucleotidyl
transferase/2'3'-cyclic
phosphodiesterase/2'nucleotidase/phosphatase; Reviewed;
Region: cca; PRK10885"
/db_xref="CDD:182810"
misc_feature 241154..241525
/gene="cca"
/locus_tag="CNE_1c02420"
/note="Nucleotidyltransferase (NT) domain of ClassII
CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398"
/db_xref="CDD:143388"
misc_feature order(241172..241177,241184..241189,241214..241216,
241220..241222,241322..241324,241337..241339,
241421..241432,241439..241441)
/gene="cca"
/locus_tag="CNE_1c02420"
/note="active site"
/db_xref="CDD:143388"
misc_feature order(241172..241177,241184..241186,241214..241216,
241220..241222,241421..241429,241439..241441)
/gene="cca"
/locus_tag="CNE_1c02420"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143388"
misc_feature order(241214..241216,241220..241222,241322..241324)
/gene="cca"
/locus_tag="CNE_1c02420"
/note="metal binding triad [ion binding]; metal-binding
site"
/db_xref="CDD:143388"
misc_feature 241610..241804
/gene="cca"
/locus_tag="CNE_1c02420"
/note="Probable RNA and SrmB- binding site of polymerase
A; Region: PolyA_pol_RNAbd; pfam12627"
/db_xref="CDD:204988"
misc_feature 241844..242206
/gene="cca"
/locus_tag="CNE_1c02420"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(241856..241858,241928..241933,242174..242176)
/gene="cca"
/locus_tag="CNE_1c02420"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 241931..241933
/gene="cca"
/locus_tag="CNE_1c02420"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene complement(242386..242823)
/locus_tag="CNE_1c02430"
/db_xref="GeneID:10916634"
CDS complement(242386..242823)
/locus_tag="CNE_1c02430"
/codon_start=1
/transl_table=11
/product="universal stress protein UspA family"
/protein_id="YP_004684093.1"
/db_xref="GI:339324400"
/db_xref="GeneID:10916634"
/translation="MFKHLLVAVDGSDLSDTAYRKAIELASSIQARLTAIQVVAHYDV
MRLQTAMLQETRQRFMQEAYRQAEAYLATIAQEAAAAGVPCETACPTGDHIFQAIIDE
AEARKCDLIVMASHGRRGLQALLIGSETHKVLTHATIPVLVFR"
misc_feature complement(242395..242814)
/locus_tag="CNE_1c02430"
/note="Usp: Universal stress protein family. The universal
stress protein Usp is a small cytoplasmic bacterial
protein whose expression is enhanced when the cell is
exposed to stress agents. Usp enhances the rate of cell
survival during prolonged exposure to...; Region:
USP_Like; cd00293"
/db_xref="CDD:30165"
misc_feature complement(order(242434..242445,242473..242478,
242482..242487,242710..242712,242794..242802))
/locus_tag="CNE_1c02430"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30165"
gene complement(242865..243698)
/gene="livF1"
/locus_tag="CNE_1c02440"
/db_xref="GeneID:10916635"
CDS complement(242865..243698)
/gene="livF1"
/locus_tag="CNE_1c02440"
/codon_start=1
/transl_table=11
/product="high-affinity branched-chain amino acid
transport system ATP-binding protein LivF"
/protein_id="YP_004684094.1"
/db_xref="GI:339324401"
/db_xref="GeneID:10916635"
/translation="MISAHTAAQPAVHAPAATLAAALSRPRPTIGQLEQLAGGTPMVA
VDNLVAGYGAMEIVHGFSLRVARGGSLCLIGPNGAGKSTVLRAIYGLARVMSGTITVA
GAPVTHLRAEQKLRQAGVAYVLQEGSIFPDMTVEENLLMGGYLMPHSRDARAAAERIF
QRHGALAQRRGERASVLSGGERRLLEISRALMMDPAVLLVDEPSIGLEPRYVDLVFEH
LRQLQQDEGKTIILVEQNARKGLAFADLGYVLVAGQLAMAGTGGELGRDPEVGRLFLG
A"
misc_feature complement(242871..243581)
/gene="livF1"
/locus_tag="CNE_1c02440"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivF; COG0410"
/db_xref="CDD:30759"
misc_feature complement(242898..243566)
/gene="livF1"
/locus_tag="CNE_1c02440"
/note="LivF (TM1139) is part of the LIV-I bacterial
ABC-type two-component transport system that imports
neutral, branched-chain amino acids. The E. coli
branched-chain amino acid transporter comprises a
heterodimer of ABC transporters (LivF and LivG), a...;
Region: ABC_TM1139_LivF_branched; cd03224"
/db_xref="CDD:72983"
misc_feature complement(243453..243476)
/gene="livF1"
/locus_tag="CNE_1c02440"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72983"
misc_feature complement(order(242994..242996,243093..243098,
243324..243326,243450..243458,243462..243467))
/gene="livF1"
/locus_tag="CNE_1c02440"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72983"
misc_feature complement(243324..243335)
/gene="livF1"
/locus_tag="CNE_1c02440"
/note="Q-loop/lid; other site"
/db_xref="CDD:72983"
misc_feature complement(243141..243170)
/gene="livF1"
/locus_tag="CNE_1c02440"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72983"
misc_feature complement(243093..243110)
/gene="livF1"
/locus_tag="CNE_1c02440"
/note="Walker B; other site"
/db_xref="CDD:72983"
misc_feature complement(243075..243086)
/gene="livF1"
/locus_tag="CNE_1c02440"
/note="D-loop; other site"
/db_xref="CDD:72983"
misc_feature complement(242988..243008)
/gene="livF1"
/locus_tag="CNE_1c02440"
/note="H-loop/switch region; other site"
/db_xref="CDD:72983"
gene complement(243695..244441)
/gene="livG1"
/locus_tag="CNE_1c02450"
/db_xref="GeneID:10916636"
CDS complement(243695..244441)
/gene="livG1"
/locus_tag="CNE_1c02450"
/codon_start=1
/transl_table=11
/product="high-affinity branched-chain amino acid
transport ATP-binding protein LivG"
/protein_id="YP_004684095.1"
/db_xref="GI:339324402"
/db_xref="GeneID:10916636"
/translation="MNDLLAVRGVTKRFGGVVANHDISLQVPHGSIVGLIGPNGSGKT
TLFNSIVGYHPIDGGSIAFDGREISRLRVPEIARLGLVRTFQQTRVFGKMSCLQNLLV
SVPHMREGLAAMCMRQAPAVTERARQTLRMAGLEDHGDRRGADLSFGQQKLLEICMAL
MNEPRLLLLDEPTAGVNPVTIDSLIALLRDINARLGITLLVIEHNMRVMMQLAGHIYC
LAHGEVLAQGSPAQITANPTVIEAYLGGQP"
misc_feature complement(243704..244441)
/gene="livG1"
/locus_tag="CNE_1c02450"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivG; COG0411"
/db_xref="CDD:30760"
misc_feature complement(243725..244429)
/gene="livG1"
/locus_tag="CNE_1c02450"
/note="The Mj1267/LivG ABC transporter subfamily is
involved in the transport of the hydrophobic amino acids
leucine, isoleucine and valine. MJ1267 is a
branched-chain amino acid transporter with 29% similarity
to both the LivF and LivG components of the E; Region:
ABC_Mj1267_LivG_branched; cd03219"
/db_xref="CDD:72978"
misc_feature complement(244310..244333)
/gene="livG1"
/locus_tag="CNE_1c02450"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72978"
misc_feature complement(order(243830..243832,243929..243934,
244184..244186,244307..244315,244319..244324))
/gene="livG1"
/locus_tag="CNE_1c02450"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72978"
misc_feature complement(244184..244195)
/gene="livG1"
/locus_tag="CNE_1c02450"
/note="Q-loop/lid; other site"
/db_xref="CDD:72978"
misc_feature complement(243977..244006)
/gene="livG1"
/locus_tag="CNE_1c02450"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72978"
misc_feature complement(243929..243946)
/gene="livG1"
/locus_tag="CNE_1c02450"
/note="Walker B; other site"
/db_xref="CDD:72978"
misc_feature complement(243911..243922)
/gene="livG1"
/locus_tag="CNE_1c02450"
/note="D-loop; other site"
/db_xref="CDD:72978"
misc_feature complement(243824..243844)
/gene="livG1"
/locus_tag="CNE_1c02450"
/note="H-loop/switch region; other site"
/db_xref="CDD:72978"
gene complement(244438..245385)
/gene="livM1"
/locus_tag="CNE_1c02460"
/db_xref="GeneID:10916637"
CDS complement(244438..245385)
/gene="livM1"
/locus_tag="CNE_1c02460"
/codon_start=1
/transl_table=11
/product="high-affinity branched-chain amino acid
transport system permease LivM"
/protein_id="YP_004684096.1"
/db_xref="GI:339324403"
/db_xref="GeneID:10916637"
/translation="MALLAGSVGALIAPWLFAGITTQLTFLWLMVLFALTWDVMGGQM
GYNSFGNIVFFGVGAYVCAVVQRDFGLGYFAGLAVGTGLAALAAVAAALALGPAMLGL
RGHYFAIGTLGLGIACADGAAGWDFIGAGSGMTLPLFPGAAGSREPFFYYAMLVLAVV
TLLSLRWLYARPFGLALNAIRDDEDKAEALGLHTTRYKILAWCVCALFLGMAGALTGN
LVGFIDPRELAFAGATFGVWMVVMAILGGKGTLWGPVIGAALFHLTQELFWTYLLNWQ
RVALGVLIVLIVVLFPTGIMGWLRDYSANRRRITGSPAP"
misc_feature complement(244495..245301)
/gene="livM1"
/locus_tag="CNE_1c02460"
/note="Transmembrane subunit (TM) of Escherichia coli LivM
and related proteins. LivM is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivM_like;
cd06581"
/db_xref="CDD:119323"
misc_feature complement(244777..244833)
/gene="livM1"
/locus_tag="CNE_1c02460"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119323"
gene complement(245457..246353)
/gene="livH1"
/locus_tag="CNE_1c02470"
/db_xref="GeneID:10916638"
CDS complement(245457..246353)
/gene="livH1"
/locus_tag="CNE_1c02470"
/codon_start=1
/transl_table=11
/product="high-affinity branched-chain amino acid
transport system permease LivH"
/protein_id="YP_004684097.1"
/db_xref="GI:339324404"
/db_xref="GeneID:10916638"
/translation="MSNLAVLFQSPELNLQLVVDGLLAGAIFALAAYGMALVWGVMNL
INIAQGELVMLGGYIVIWLVGKGVPPMLAVPVAAAVMYCVGWGLYRIVIFRLVERDLF
VSVLATFGLSIVLQQLANLAFGANVRTVDAGLGSLLLPGGLVVPKIKLAAFAAALALG
ASLMLFLRHSRRGQAIRATAQNARAARVLGVDADRIYASTFALNAAICGAAGGLVAMT
WIIHPYLGLPYTVRAFMIVVVAGLGSMLPVLGAGGGLGIAENYAGFLLGTEYQTAFLY
ALLVAILVSRNLMLRRRRGYLR"
misc_feature complement(245502..246242)
/gene="livH1"
/locus_tag="CNE_1c02470"
/note="Transmembrane subunit (TM) of Escherichia coli LivH
and related proteins. LivH is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivH_like;
cd06582"
/db_xref="CDD:119324"
misc_feature complement(245748..245804)
/gene="livH1"
/locus_tag="CNE_1c02470"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119324"
gene complement(246379..247608)
/locus_tag="CNE_1c02480"
/db_xref="GeneID:10916639"
CDS complement(246379..247608)
/locus_tag="CNE_1c02480"
/codon_start=1
/transl_table=11
/product="Leu/Ile/Val-binding protein 5"
/protein_id="YP_004684098.1"
/db_xref="GI:339324405"
/db_xref="GeneID:10916639"
/translation="MRHAAVCALAGLGLAVSAPAAAKVEGDTIVLGAAVSLTGKYSTN
GKNTQDGYNLAVKRVNEMGGVKVGGKAYQLKVLYYDDESTSARGAQLAERLINQDGVK
YVLGPYSSGLTKAIAPVTEKYKIPMVEGNGADRNLFTQGYRYMFAVLNTSDYYLRSAI
QLAAEEAQRAGKSPKSLKVAIAIENDNFSRDVRDGVEEDAKRLGMQVVIDDKLPPELN
DMSATLAKVKALKPDILVVSGHEKGAALAVRQVAEMRIDVPMLALTHCDSAQVIEKFG
KSAEFAVCGSQWDRTLGYKDRWFGTADQYAQRFEKEYHYEAPYQAAESTAAVLAFADA
FERAGSFDTEKVRDALAKTDLMTFYGPLRFDQSGKNIAKSMVLYQVQDGKFKVVAPGK
WASSKVIYPAPAWARRK"
misc_feature complement(246460..247527)
/locus_tag="CNE_1c02480"
/note="Periplasmic binding protein; Region: Peripla_BP_6;
pfam13458"
/db_xref="CDD:205636"
misc_feature complement(246469..247521)
/locus_tag="CNE_1c02480"
/note="Type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type active
transport systems that are predicted to be involved in
transport of amino acids, peptides, or inorganic ions;
Region: PBP1_ABC_ligand_binding_like_5; cd06338"
/db_xref="CDD:107333"
misc_feature complement(order(246817..246819,246889..246891,
247045..247047,247210..247218,247279..247287))
/locus_tag="CNE_1c02480"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107333"
gene 247856..249247
/locus_tag="CNE_1c02490"
/db_xref="GeneID:10916640"
CDS 247856..249247
/locus_tag="CNE_1c02490"
/codon_start=1
/transl_table=11
/product="sugar uptake ABC transporter"
/protein_id="YP_004684099.1"
/db_xref="GI:339324406"
/db_xref="GeneID:10916640"
/translation="MAKTAHPGGTHVAVATSPNTNTNTGRRGFIRATGAVGLAAGLGP
FVIPRYAHAAKHTLKILQWNHFVPGYDKWFDDTYVKEWGQKNDTEVVVDHVGIPALAT
RAAAEVSAQKGHDLFMFLSPPPVYEEQVIDHRELYEECQRKHGKPMELAIKSTYNPKT
KKYFGFSDSFVPDPINYRKDLWDEAGMKPPDTWLDVLAAGRKIKAKSGIPVGVGLSAE
LDTAMAMRAILYAFGGSVQDDRHTVVLNSKNTIEAVKFVKALYQEAMAPDVLAWDPSS
NNRAMLAGKISLCLNAISITREAENKNLPIARDIWLTQALQGPVRRIALEHVMDCYVI
WKFAENIAGAKKFLVDYIDNFRQGFLGSEFYNFPCFPSTVPDLQKLIADDQKATPRDK
YKVLGALMNQATNVGYPGYANAAVDEIFNTWVLNTMFAKAATGDETPENAVRIADAAC
KRIFSKWRDKGMV"
misc_feature 248012..249226
/locus_tag="CNE_1c02490"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
gene 249261..250289
/gene="ugpC1"
/locus_tag="CNE_1c02500"
/db_xref="GeneID:10916641"
CDS 249261..250289
/gene="ugpC1"
/locus_tag="CNE_1c02500"
/EC_number="3.6.3.20"
/codon_start=1
/transl_table=11
/product="sn-glycerol-3-phosphate ABC transporter
ATP-binding protein"
/protein_id="YP_004684100.1"
/db_xref="GI:339324407"
/db_xref="GeneID:10916641"
/translation="MASVEVRSLTKHFDGANVVDNVDLGARDAEFLVLLGPSGSGKTT
LLRLIAGLETPSHGDILVDGRVVTALPPRLRNMAMVFQSYALYPHLNVFDNIAFPLRA
RHMSREEVGRKVDWAAQLFGIGHLLQRKPRQLSGGERQRVALARAVVREPVAFLLDEP
LSNLDAKLRTSARDELQRFQRRLAITTVYVTHDQIEALGLGDRIAILDHGRIHQIGTP
QEVYERPADLFVATFIGSPPMNLIEADGVVTGFRPEHFLPREAYPAADALRAFAMDVT
RIENLGSDRLVYGKLEAPLPPASVVSRIPCTVTVPIEPGAGHRFVVRERDLRRFDAKS
GASLGAAP"
misc_feature 249261..250265
/gene="ugpC1"
/locus_tag="CNE_1c02500"
/note="glycerol-3-phosphate transporter ATP-binding
subunit; Provisional; Region: ugpC; PRK11650"
/db_xref="CDD:183258"
misc_feature 249270..249908
/gene="ugpC1"
/locus_tag="CNE_1c02500"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 249366..249389
/gene="ugpC1"
/locus_tag="CNE_1c02500"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(249375..249380,249384..249392,249504..249506,
249732..249737,249834..249836)
/gene="ugpC1"
/locus_tag="CNE_1c02500"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 249495..249506
/gene="ugpC1"
/locus_tag="CNE_1c02500"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 249660..249689
/gene="ugpC1"
/locus_tag="CNE_1c02500"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 249720..249737
/gene="ugpC1"
/locus_tag="CNE_1c02500"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 249744..249755
/gene="ugpC1"
/locus_tag="CNE_1c02500"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 249822..249842
/gene="ugpC1"
/locus_tag="CNE_1c02500"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 250286..251233
/locus_tag="CNE_1c02510"
/db_xref="GeneID:10916642"
CDS 250286..251233
/locus_tag="CNE_1c02510"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_004684101.1"
/db_xref="GI:339324408"
/db_xref="GeneID:10916642"
/translation="MTPLHIATGQPAQDQARQPAQRLADDDRWLGRAMLAPAVIYIAL
LVGFPFMLSIYYSLSDATVGSQVLHFVGLENFRRVLESNTFWRSLRNALVFTLVSQVL
VVVLAKMLAMALYQDFRGKWLVRLLILLPWVAPISLGTIGWLWIFDPVYSIINWTLAA
VGVLGPRNWPVWLGQPELAMASVIVVDVWRLLPLATVIILAGLSGIPQDIHDAAAMDG
AGFWRHLFLINLPLVMPIMLVALLFGIVFTFTDMIIIYVLTRGGPYDTTQVLASLAFF
TGIQGGDLAEGAAISLFLFPVLVAVVIVLLTVARRAEVT"
misc_feature <250757..251158
/locus_tag="CNE_1c02510"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(250757..250774,251033..251050)
/locus_tag="CNE_1c02510"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(250763..250768,250772..250774,250847..250852,
250859..250861,250865..250867,250874..250879,
250883..250885,250895..250900,250907..250909,
250958..250960,251000..251005,251012..251014,
251033..251044,251051..251056,251099..251104,
251132..251137,251144..251149,251153..251158)
/locus_tag="CNE_1c02510"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(250772..250774,250832..250834,251051..251053,
251093..251095,251102..251104,251132..251134)
/locus_tag="CNE_1c02510"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(250910..250948,250964..250969,250979..250981)
/locus_tag="CNE_1c02510"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 251235..252089
/gene="ycjP"
/locus_tag="CNE_1c02520"
/db_xref="GeneID:10916643"
CDS 251235..252089
/gene="ycjP"
/locus_tag="CNE_1c02520"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_004684102.1"
/db_xref="GI:339324409"
/db_xref="GeneID:10916643"
/translation="MRAAAITYRRWAARGAHFGLLAAFVAFCAFPFYWMLITTFKDVH
DLINTANNPFLFNLPPTMENLRILFGETRYLRWVLNTLVVAVGVVLITLLLAVPAGYS
LARLSGRWGRQWAIGIFLTYLIPPTILFIPFSRIIGSLGLQDSLWSLVLVYPSFTVPF
CSWLMMGFFKAVPRDIEEAAMMDGLSRFGAFLKVVVPLSSSGILTVVIFSATLAMQEF
VYALTFITSSSQYTVSVGVPTFLVRGDVYFWGSLMGACLIVSVPVAALYNSFLDRFVA
GFTVGAIK"
misc_feature 251259..252086
/gene="ycjP"
/locus_tag="CNE_1c02520"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 251526..252023
/gene="ycjP"
/locus_tag="CNE_1c02520"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(251526..251531,251544..251546,251574..251585,
251589..251618,251625..251630,251697..251702,
251706..251708,251712..251714,251721..251726,
251730..251732,251742..251747,251754..251756,
251805..251807,251847..251852,251859..251861,
251880..251891,251901..251906,251943..251948,
251976..251981,251988..251993,251997..252002,
252009..252014,252021..252023)
/gene="ycjP"
/locus_tag="CNE_1c02520"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(251592..251630,251880..251891,251895..251900)
/gene="ycjP"
/locus_tag="CNE_1c02520"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(251682..251684,251901..251903,251937..251939,
251946..251948,251976..251978)
/gene="ycjP"
/locus_tag="CNE_1c02520"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(251757..251795,251811..251816,251826..251828)
/gene="ycjP"
/locus_tag="CNE_1c02520"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(252099..252293)
/locus_tag="CNE_1c02530"
/db_xref="GeneID:10916644"
CDS complement(252099..252293)
/locus_tag="CNE_1c02530"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684103.1"
/db_xref="GI:339324410"
/db_xref="GeneID:10916644"
/translation="MLRWTLTIFLSVIILSAALPWLQKVGLGRLPGDVRFRLFGREFV
LPFASTILLSMVALVIGKLL"
misc_feature complement(252102..252293)
/locus_tag="CNE_1c02530"
/note="Protein of unknown function (DUF2905); Region:
DUF2905; pfam11146"
/db_xref="CDD:204596"
gene complement(252310..253497)
/locus_tag="CNE_1c02540"
/db_xref="GeneID:10916645"
CDS complement(252310..253497)
/locus_tag="CNE_1c02540"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684104.1"
/db_xref="GI:339324411"
/db_xref="GeneID:10916645"
/translation="MQKAASLPLPPADAQAASDTLTARIGESIDAAGGWIGFDRYMAL
ALYAPGLGYYSGGSAKFGRDARDGSDFITAPELSPFFARTLARQFAPLLAQGLPRMLE
FGAGTGRLAADLLLGLEQEGQLPDTYAIVELSGELRARQQATLAQRAPHLADRVTWLD
TLPASFEGVIVGNEVLDAMPVQLYARSGSRWHERGVVRGDDATSAFRFEDRPLADADV
PEALRDIPGDHDLVTETHAEAEGFTRAVGAMLARGAAFFIDYGFPAGEYYHPQRAGGT
LMCHYRHHAHPDPFLYPGLQDITAHVNFSGIALAAVDAGLTVAGFASQARFLMNAGIT
ELLMALDPSDARAFLPQANAVQKLLSEAEMGELFKVIALTRALDDSEPMDGFARGDRC
HTL"
misc_feature complement(252337..253443)
/locus_tag="CNE_1c02540"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1565"
/db_xref="CDD:31753"
misc_feature complement(252535..253248)
/locus_tag="CNE_1c02540"
/note="Putative S-adenosyl-L-methionine-dependent
methyltransferase; Region: Methyltransf_28; pfam02636"
/db_xref="CDD:202326"
gene 253672..254367
/locus_tag="CNE_1c02550"
/db_xref="GeneID:10916646"
CDS 253672..254367
/locus_tag="CNE_1c02550"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_004684105.1"
/db_xref="GI:339324412"
/db_xref="GeneID:10916646"
/translation="MAVHCHRSVDEAEALAAQIRALGRRAAVLRADLADEAATGRLVA
DCTAALGVPTCLVNNASLFQYDVATSFSYASLDTHMRTNVAAPLLLARELHKALGAAA
GNDKVIEPRGVVINLLDQKLDNLNPDFLSYTLSKAALQTATVQLAQALAPRLRVVGVA
PGITLVSGEQSEQSFRRAHRVTPLGQSSTPEDIAQAVAYLAQARAVTGTTLYVDGGQH
LMPLARDVMFLTE"
misc_feature 253675..254364
/locus_tag="CNE_1c02550"
/note="short chain dehydrogenase; Provisional; Region:
PRK09134"
/db_xref="CDD:181667"
misc_feature order(253684..253692,253846..253854,254020..254028,
254065..254067,254077..254079,254152..254163)
/locus_tag="CNE_1c02550"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(253918..253920,254026..254028,254065..254067,
254077..254079)
/locus_tag="CNE_1c02550"
/note="active site"
/db_xref="CDD:187535"
gene 254454..254855
/gene="folB"
/locus_tag="CNE_1c02560"
/db_xref="GeneID:10916647"
CDS 254454..254855
/gene="folB"
/locus_tag="CNE_1c02560"
/EC_number="4.1.2.25"
/codon_start=1
/transl_table=11
/product="dihydroneopterin aldolase FolB"
/protein_id="YP_004684106.1"
/db_xref="GI:339324413"
/db_xref="GeneID:10916647"
/translation="MTMLAALSHPSLQDCRRMFLRNYEVQINIGVHEFEKKGEQRVLI
NIDLFVPLAQSTPQADKLDEVVDYDFMRNTVAERMAQGHVHLQETLCDDVARAMLKHP
KVRAVRVSTEKPDVYPDCDSVGVEVFHIKQA"
misc_feature 254505..254837
/gene="folB"
/locus_tag="CNE_1c02560"
/note="Dihydroneopterin aldolase; Region: FolB;
smart00905"
/db_xref="CDD:197973"
misc_feature order(254571..254573,254577..254579,254784..254786,
254832..254834)
/gene="folB"
/locus_tag="CNE_1c02560"
/note="active site"
/db_xref="CDD:29764"
gene 254965..255909
/gene="ttcA"
/locus_tag="CNE_1c02570"
/db_xref="GeneID:10916648"
CDS 254965..255909
/gene="ttcA"
/locus_tag="CNE_1c02570"
/codon_start=1
/transl_table=11
/product="tRNA 2-thiocytidine biosynthesis protein TtcA"
/protein_id="YP_004684107.1"
/db_xref="GI:339324414"
/db_xref="GeneID:10916648"
/translation="MSHSNNFYRLETRLQSQTGKAIGDFGMIEDGDTVLVCMSGGKDS
YTMLSVLMALQKRAPIQFKLIAMNLDQKQPGFPEHILPEYLKSVGVEYVIVEADTYSI
VKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVQTFFLNMFFGGKM
KAMPPKLSTDDGQHIVIRPLAYCSEKDIASYARAMEFPIIPCNLCGSQENLQRKKVSE
MLQDWERQNPGRIDNIFSALRNVVPSHLADTDLFPFTGLATGLAKVDEASLFGETTFQ
QQPLMFAGNVEENRMEFVRFERPPAAAAAPAAEQAGTQ"
misc_feature 254971..255744
/gene="ttcA"
/locus_tag="CNE_1c02570"
/note="tRNA 2-thiocytidine biosynthesis protein TtcA;
Provisional; Region: PRK10696"
/db_xref="CDD:182655"
misc_feature 255064..255588
/gene="ttcA"
/locus_tag="CNE_1c02570"
/note="This is a subfamily of Adenine nucleotide alpha
hydrolases superfamily.Adeninosine nucleotide alpha
hydrolases superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which binds
to Adenosine group. This subfamily; Region:
Alpha_ANH_like_II; cd01993"
/db_xref="CDD:30180"
misc_feature order(255073..255081,255085..255096,255166..255168,
255172..255174)
/gene="ttcA"
/locus_tag="CNE_1c02570"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30180"
gene complement(255982..256932)
/locus_tag="CNE_1c02580"
/db_xref="GeneID:10916649"
CDS complement(255982..256932)
/locus_tag="CNE_1c02580"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684108.1"
/db_xref="GI:339324415"
/db_xref="GeneID:10916649"
/translation="MRADFNMAVSAHRAAVSEFHNCWARRIFAILGAAALCACSAMKL
GYQQGDHLAYWWIDNYVDVTTAQEPLTREAIARFFAWHRKAQLPEIATLLQQAKAEVR
QPVTPATVEHFQDASQQLARKSFEQAMPDLADLLLTLTPEQIGRMEKKFGEGNAKYRK
KFLNPNPAEREEARYDKVMEYARLVYGNFSSDQEKAIRARIGPVVQNAEARYAERVAR
QQEWLKMVRYVQATQPPKAQVIDVLHRFREYWQNPPARLAASHEASDNAGIALTVAIA
NMTTPQQKAHAQDRFQKWIDDTHALMRDKANAPVRAAAAN"
gene 257100..258464
/gene="gluM"
/locus_tag="CNE_1c02590"
/db_xref="GeneID:10916650"
CDS 257100..258464
/gene="gluM"
/locus_tag="CNE_1c02590"
/EC_number="2.3.1.-"
/EC_number="2.7.7.23"
/codon_start=1
/transl_table=11
/product="glucosamine-1-phosphate acetyltransferase /
UDP-N-acetylglucosamine pyrophosphorylase GluM"
/protein_id="YP_004684109.1"
/db_xref="GI:339324416"
/db_xref="GeneID:10916650"
/translation="MNIVILAAGMGKRMYSDLPKVLHPVAGRPMLAHVLDTARALSPS
RLVVVVGHGAGRVREAVAADDVAFAEQPQQLGTGHAVMQALPLLDDSQPTLVLYGDVP
LTSAATLQALVAEAGTQRFGVLTVEMPDPTGYGRIVRDAAGSIVRIVEQKDASDAEKA
IREINTGIIVCPTGHLRKWLSTLRNDNAQGEYYLTDTVERAVADGVETVSAQPAAIWE
TLGVNSKLQLAEVERIHQGNQARRLLEAGVTLLDPARIDVRGELSCGRDVTIDVGCVF
EGRVHLEDGVRIGAHCVIRNSTVGAGAQVHPFCHIDEARVGPAGRIGPYARLRPGTEL
GEDVHIGNFVEVKNAQVAAHSKANHLAYVGDATVGSRVNIGAGTITCNYDGVNKHRTV
IEDDVFIGSDTQLVAPVTVRRGATLGAGTTLTKEAPADKLTLSRAKQLTIDAWQRPVK
QPKK"
misc_feature 257100..258452
/gene="gluM"
/locus_tag="CNE_1c02590"
/note="UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase; Region: glmU; TIGR01173"
/db_xref="CDD:162235"
misc_feature 257106..257783
/gene="gluM"
/locus_tag="CNE_1c02590"
/note="N-terminal domain of bacterial GlmU; Region:
GT2_GlmU_N_bac; cd02540"
/db_xref="CDD:133020"
misc_feature order(257115..257123,257244..257246,257328..257330,
257337..257339,257391..257393,257397..257399)
/gene="gluM"
/locus_tag="CNE_1c02590"
/note="Substrate binding site; other site"
/db_xref="CDD:133020"
misc_feature order(257397..257399,257766..257768)
/gene="gluM"
/locus_tag="CNE_1c02590"
/note="Mg++ binding site; other site"
/db_xref="CDD:133020"
misc_feature 257838..258416
/gene="gluM"
/locus_tag="CNE_1c02590"
/note="N-acetyl-glucosamine-1-phosphate uridyltransferase
(GlmU), C-terminal left-handed beta-helix (LbH)
acetyltransferase domain: GlmU is also known as
UDP-N-acetylglucosamine pyrophosphorylase. It is a
bifunctional bacterial enzyme that catalyzes two...;
Region: LbH_GlmU_C; cd03353"
/db_xref="CDD:100044"
misc_feature order(258084..258086,258132..258134,258138..258140,
258174..258176,258183..258185,258216..258227,
258240..258248,258261..258263,258291..258293,
258297..258302,258351..258356,258405..258407)
/gene="gluM"
/locus_tag="CNE_1c02590"
/note="active site"
/db_xref="CDD:100044"
misc_feature order(258084..258086,258132..258134,258138..258140,
258174..258176,258183..258185,258216..258224,
258243..258245,258261..258263)
/gene="gluM"
/locus_tag="CNE_1c02590"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100044"
misc_feature order(258225..258227,258240..258242,258246..258248,
258297..258302,258351..258356,258405..258407)
/gene="gluM"
/locus_tag="CNE_1c02590"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100044"
gene 258582..260420
/gene="glmS"
/locus_tag="CNE_1c02600"
/db_xref="GeneID:10916651"
CDS 258582..260420
/gene="glmS"
/locus_tag="CNE_1c02600"
/EC_number="2.6.1.16"
/codon_start=1
/transl_table=11
/product="glutamine-fructose-6-phosphate transaminase"
/protein_id="YP_004684110.1"
/db_xref="GI:339324417"
/db_xref="GeneID:10916651"
/translation="MCGIVGAVSTRNIVPVLIEGLRRLEYRGYDSCGVAVVRDDAVER
ARTVSRVADLDAQTQASGLSGFTGVAHTRWATHGKPDTVNAHPHLSGETIALVHNGII
ENYEPLREELRAVGYGFESQTDSEVVAHLIHQAYTYPSSATRGDLFASVRAVTKRLHG
AYAIAVFAKDQPGRVVGARAGSPLVVALGENEAFLASDALAVAGTANRIIYLEEGDVV
EITLDGVTIHDVDDHPVEREARVVEAHAASVELGPYRHFMQKEIFEQPRALGDTLEGI
ESISPELFGSGAAEVFAGIDSVLILACGTSYYSGCTAKYWLESIARIPTQVEVASEYR
YRETVPNPRALVVVISQSGETADTMAALRHARALGHVHTLAVCNVATSAMVRETELRF
LTRAGTEIGVASTKAFTTQLAALYMLTLALAKVRGLLTEDAEAKALTNLRHLPVALHG
VLALEPQIIAWSEDFARRENALFLGRGLHYPIALEGALKLKEISYIHAEAYPAGELKH
GPLALVTEAMPVVTVAPNDALLEKLKSNIQEVRARGGRLYVFADSDTQIQSSDGIQVI
RLPEHYGDLSPILHVVPLQLLAYHTACARGTDVDKPRNLAKSVTVE"
misc_feature 258582..260417
/gene="glmS"
/locus_tag="CNE_1c02600"
/note="glucosamine--fructose-6-phosphate aminotransferase;
Reviewed; Region: PRK00331"
/db_xref="CDD:178980"
misc_feature 258585..259241
/gene="glmS"
/locus_tag="CNE_1c02600"
/note="Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the N-terminus
of glucosamine-6P synthase (GlmS, or GFAT in humans). The
glutaminase domain catalyzes amide nitrogen transfer from
glutamine to the appropriate substrate. In...; Region:
GFAT; cd00714"
/db_xref="CDD:48478"
misc_feature order(258585..258587,258660..258662,258798..258803,
258807..258812,258837..258839,258876..258881,
258951..258956)
/gene="glmS"
/locus_tag="CNE_1c02600"
/note="glutaminase active site [active]"
/db_xref="CDD:48478"
misc_feature 259473..259805
/gene="glmS"
/locus_tag="CNE_1c02600"
/note="SIS (Sugar ISomerase) domain repeat 1 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_1; cd05008"
/db_xref="CDD:88405"
misc_feature order(259488..259493,259521..259526,259533..259538,
259557..259559,259563..259565,259575..259577,
259584..259586,259650..259652)
/gene="glmS"
/locus_tag="CNE_1c02600"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88405"
misc_feature order(259494..259499,259629..259637)
/gene="glmS"
/locus_tag="CNE_1c02600"
/note="active site"
/db_xref="CDD:88405"
misc_feature 259947..260411
/gene="glmS"
/locus_tag="CNE_1c02600"
/note="SIS (Sugar ISomerase) domain repeat 2 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_2; cd05009"
/db_xref="CDD:88406"
misc_feature order(260010..260012,260052..260054,260064..260066,
260070..260072,260076..260078,260082..260084,
260094..260096,260100..260108,260112..260123,
260172..260177,260187..260189,260193..260198,
260388..260393,260406..260408)
/gene="glmS"
/locus_tag="CNE_1c02600"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88406"
misc_feature order(260046..260048,260055..260057)
/gene="glmS"
/locus_tag="CNE_1c02600"
/note="active site"
/db_xref="CDD:88406"
gene 261151..261780
/locus_tag="CNE_1c02610"
/db_xref="GeneID:10916652"
CDS 261151..261780
/locus_tag="CNE_1c02610"
/note="membrane anchoring protein"
/codon_start=1
/transl_table=11
/product="thiosulfate reductase cytochrome b subunit"
/protein_id="YP_004684111.1"
/db_xref="GI:339324418"
/db_xref="GeneID:10916652"
/translation="MKNAHHVPPDKLAPHSQSIQPAWVRITHWLNLIAVLIMMLSGWR
IYNASPLFGFHFPNAITLGGWLAGGLQWHFAAMWLLVANGLFYLVMNIVTGRFRRRFF
PLSVPAALRDIAAAMRGKLAHPNLAEYNAAQKLFYVGVVVVIVLTVLSGLAIWKSVQF
PLLRVLMGGYDAARWVHFIGMSAIALFLVIHVVMVLLVPRTLIIMLRGR"
misc_feature 261202..261774
/locus_tag="CNE_1c02610"
/note="Cytochrome b(N-terminal)/b6/petB; Region:
Cytochrom_B_N; pfam00033"
/db_xref="CDD:143822"
misc_feature 261205..261777
/locus_tag="CNE_1c02610"
/note="Thiosulfate reductase cytochrome B subunit
(membrane anchoring protein) [Energy production and
conversion]; Region: COG4117"
/db_xref="CDD:33874"
gene 261802..262575
/gene="sorA"
/locus_tag="CNE_1c02620"
/db_xref="GeneID:10916653"
CDS 261802..262575
/gene="sorA"
/locus_tag="CNE_1c02620"
/codon_start=1
/transl_table=11
/product="oxidoreductase molybdopterin binding protein
SorA"
/protein_id="YP_004684112.1"
/db_xref="GI:339324419"
/db_xref="GeneID:10916653"
/translation="MSKAEQIVRLDRKLILHDATRELSMPSRRLFGKRAITLGGLLLL
TGCSITDKPSVESFLMAVSRFNDRVQGWLFDPNRLAPTYPESRLTRPFPFNAYYGLAD
VPEVDANAFQLEVGGLVSRRTAWTLEELYALPQTAQVTRHICVEGWSAIGKWGGTRFS
DFLQRVGADTTAKYVGFLCADDYYTSIDMPTALHPQTLLTFTYDGERLPPKYGFPIKL
RMPTKLGYKNPKHIVAIYVTNKYPGGYWEDQGYNWFGGS"
misc_feature 261943..262569
/gene="sorA"
/locus_tag="CNE_1c02620"
/note="Sulfite oxidase and related enzymes [General
function prediction only]; Region: COG2041"
/db_xref="CDD:32224"
misc_feature 262036..262566
/gene="sorA"
/locus_tag="CNE_1c02620"
/note="Sulfite oxidase (SO) family, molybdopterin binding
domain. This molybdopterin cofactor (Moco) binding domain
is found in a variety of oxidoreductases, main members of
this family are nitrate reductase (NR) and sulfite oxidase
(SO). SO catalyzes the...; Region: SO_family_Moco;
cl00199"
/db_xref="CDD:206895"
misc_feature order(262087..262089,262093..262095,262099..262101,
262231..262233,262348..262350,262435..262437,
262450..262452,262474..262476,262483..262485,
262489..262494)
/gene="sorA"
/locus_tag="CNE_1c02620"
/note="Moco binding site; other site"
/db_xref="CDD:29401"
misc_feature 262231..262233
/gene="sorA"
/locus_tag="CNE_1c02620"
/note="metal coordination site [ion binding]; other site"
/db_xref="CDD:29401"
gene 262562..262912
/locus_tag="CNE_1c02630"
/db_xref="GeneID:10916654"
CDS 262562..262912
/locus_tag="CNE_1c02630"
/codon_start=1
/transl_table=11
/product="pentapeptide MXKDX repeat-containing protein"
/protein_id="YP_004684113.1"
/db_xref="GI:339324420"
/db_xref="GeneID:10916654"
/translation="MGAPDPPKPDRQVCRPLFTNPIKGYNMNKRLVLLLSSAVLLASH
AWAQDAMKKDEMGKGAMGASGSMAKESMGKDDMDMKKEKMSKSHAKKPHEKKEGMSKG
TMEKDSMSKDATKQ"
gene 263159..263596
/locus_tag="CNE_1c02640"
/db_xref="GeneID:10916655"
CDS 263159..263596
/locus_tag="CNE_1c02640"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684114.1"
/db_xref="GI:339324421"
/db_xref="GeneID:10916655"
/translation="MKKLFAALASAALVGTVFAQTAVPASATQPQGGASKDQAKVVKE
KSATLAKADKNHKSAGAHEVKAQASTNKEKADVKADASKSAAKGSHHNASKTKAAHTE
AGMAKADAKNDSDTAKAKADVAKPVAQPDAAKAAASVDKTKNQ"
gene 263907..264266
/locus_tag="CNE_1c02650"
/db_xref="GeneID:10916656"
CDS 263907..264266
/locus_tag="CNE_1c02650"
/codon_start=1
/transl_table=11
/product="MerR family transcriptional regulator"
/protein_id="YP_004684115.1"
/db_xref="GI:339324422"
/db_xref="GeneID:10916656"
/translation="MEMVRYYQRCGMLSISERVHGAIRQYSGDSLQWHHFIRRAQALG
FTLDEVRTLLQLNDGSKCGTARALAEQTLQVVEERLRDLRMLRTELRSLVGQCRDNRD
EVMCPLIANLCEANWPK"
misc_feature 263910..264242
/locus_tag="CNE_1c02650"
/note="Helix-Turn-Helix DNA binding domain of
transcription regulators from the MerR superfamily;
Region: HTH_MerR-SF; cl02600"
/db_xref="CDD:207663"
misc_feature order(263919..263921,263970..263978)
/locus_tag="CNE_1c02650"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:133389"
gene complement(264315..264950)
/locus_tag="CNE_1c02660"
/db_xref="GeneID:10916657"
CDS complement(264315..264950)
/locus_tag="CNE_1c02660"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684116.1"
/db_xref="GI:339324423"
/db_xref="GeneID:10916657"
/translation="MENKLTGLEGHAGYAAPRYSRGLRTTLLLLEAGRRLLRERTLEQ
VSIQEICAHAGVTTGAFYSRFEGKESYFKALQALVLTTLRKAMAERLAQLDTCPPTLE
DAVCTLARDSRIWAYRNAGVLRASLVARVTSGEDPIRQLNRQYMDDLASRLARLLPAG
ASPELELRIRFAHQALAGTLLYALINRDSTFAMSDRRLDMEMARAFLLYVA"
misc_feature complement(264726..>264818)
/locus_tag="CNE_1c02660"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene 265137..266497
/locus_tag="CNE_1c02670"
/note="major facilitator superfamily MFS_1"
/pseudo
/db_xref="GeneID:10916658"
gene complement(266498..267700)
/locus_tag="CNE_1c02680"
/db_xref="GeneID:10916659"
CDS complement(266498..267700)
/locus_tag="CNE_1c02680"
/EC_number="2.1.1.37"
/codon_start=1
/transl_table=11
/product="DNA (cytosine-5-)-methyltransferase"
/protein_id="YP_004684117.1"
/db_xref="GI:339324424"
/db_xref="GeneID:10916659"
/translation="MSLSSLVGQEYDWAMQRLQAFKYELMPNGEQQRNMRRYAGSCRF
VYNKALALQKQRYDQGEKKLSYAGLCKQLTEWRNSTETAWLADAPVHPLQQTLKDLER
AYTNFFAKRADFPRFKKKGLGDSFRYPDQKQIKLDQTNSRIFLPKLGWLRYRNSRDVL
GEVRNACVSLSGGKWFVSIQTERKVERPVPKATSAIGIDMGIARFATMSDGTFLAPLN
SFRKHEARLRRAQRAMSRKTKFSNNWKKSKARIQRIHARIGNARLDYLHKATTTISEN
QAMVCIEDLKVRNMSKSAAGSSGQPGKNVRAKSGLNKAILDQGWYEFGRQLEYKLAWN
GGWLIAVPPQHTSRTCPCCGHVSAENRQSQASFACVACGYANHADVVGAINILARGHR
VAACGESA"
misc_feature complement(267515..267649)
/locus_tag="CNE_1c02680"
/note="Helix-turn-helix domain; Region: HTH_OrfB_IS605;
pfam12323"
/db_xref="CDD:204881"
misc_feature complement(266501..267643)
/locus_tag="CNE_1c02680"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG0675"
/db_xref="CDD:31019"
misc_feature complement(266828..267454)
/locus_tag="CNE_1c02680"
/note="Probable transposase; Region: OrfB_IS605;
pfam01385"
/db_xref="CDD:189964"
misc_feature complement(266660..266923)
/locus_tag="CNE_1c02680"
/note="transposase, IS605 OrfB family, central region;
Region: tspaseT_teng_C; TIGR01766"
/db_xref="CDD:200129"
gene 267866..268012
/locus_tag="CNE_1c02690"
/db_xref="GeneID:10916660"
CDS 267866..268012
/locus_tag="CNE_1c02690"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_004684118.1"
/db_xref="GI:339324425"
/db_xref="GeneID:10916660"
/translation="MIRKKNYPSISKKLWGGALWSPSYFAGSCGGAPIEIIRQYIEQQ
QTPH"
misc_feature <267866..267964
/locus_tag="CNE_1c02690"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene complement(268083..269504)
/gene="tnpA1"
/locus_tag="CNE_1c02700"
/db_xref="GeneID:10916661"
CDS complement(268083..269504)
/gene="tnpA1"
/locus_tag="CNE_1c02700"
/EC_number="3.1.-.-"
/codon_start=1
/transl_table=11
/product="transposase for transposon Tn5"
/protein_id="YP_004684119.1"
/db_xref="GI:339324426"
/db_xref="GeneID:10916661"
/translation="MSGVNFRPSYLCCCSGLAIRDDTADWASEEFAEASLGDARLSQR
LVALARQLAISPHTSLPQALSPAELKAAYRFFDNDQVDTNVVLAPHIAQTLHRMEQLP
VVLAIQDTTEFNLTHLHATEGLGRCTGGNERGFLMHSLLAVSPEGLPLGVLGMKTWTR
AEATKGSAAQRKSRPVHEKESAKWIEGLAHLSALKSRCAQTQLVGIGDRESDVYELFA
AERPDGVDWLVRAAWNRCARHPQRYLWQAVLDTPAAGYTELLIPARGARTLRTARLTL
RYAPVRLQPPQTRAGLPEQNVFAVHVIEDEPPAGIEPLEWMLLSSVPTHSPEQALERL
QWYARRWTIETWHRVLKSGCRIEARQFGTLERFVRATSLFAVIAWRILYTTLLARLDG
DLPCEVVLQPIEWQALYCRVHRTTRPPDKVPSLNQAVLWIATLGGYLNRRSDPPPGAT
VIWRGFFVLHEITEMFRIFSSGP"
misc_feature complement(268101..>268319)
/gene="tnpA1"
/locus_tag="CNE_1c02700"
/note="Transposase Tn5 dimerisation domain; Region:
Dimer_Tnp_Tn5; pfam02281"
/db_xref="CDD:145436"
gene complement(269686..270627)
/gene="sdsB"
/locus_tag="CNE_1c02710"
/db_xref="GeneID:10916662"
CDS complement(269686..270627)
/gene="sdsB"
/locus_tag="CNE_1c02710"
/codon_start=1
/transl_table=11
/product="SDS degradation transcriptional activation
protein SdsB"
/protein_id="YP_004684120.1"
/db_xref="GI:339324427"
/db_xref="GeneID:10916662"
/translation="MGLRQLHHFVTLVEQGSFARAASALHLSQPALTRSIQALEADLG
PLIDRSYGKVRPTAAGMLALERARRMLREQRELRRDLQLLEEVEIGTIRAGFGPFAAS
FLLDPVLEALVRRYPHLRIDLETADTPAMRRSLEAERLDVFVGESRSLAEQGHLQIDR
LPALETAFFVRSGHPLARQREVTLAELRAYPVAGTRLPAHVLRFFRQALHEARGGSGP
VSEDAPGLMTVTCNDMHALRSLLLAVDAVALVPVAMMADACAQGMAVALPMHPPTELR
AQYGIVSLAGRSPSPAMRAFAALVHEAVAQASGGAGP"
misc_feature complement(269704..270627)
/gene="sdsB"
/locus_tag="CNE_1c02710"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(270448..270621)
/gene="sdsB"
/locus_tag="CNE_1c02710"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(269713..270360)
/gene="sdsB"
/locus_tag="CNE_1c02710"
/note="LysR substrate binding domain; Region:
LysR_substrate; pfam03466"
/db_xref="CDD:202651"
misc_feature complement(order(269899..269904,269908..269913,
269929..269946,270253..270273,270277..270279,
270289..270291,270298..270303,270307..270312))
/gene="sdsB"
/locus_tag="CNE_1c02710"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 270746..271738
/locus_tag="CNE_1c02720"
/db_xref="GeneID:10916663"
CDS 270746..271738
/locus_tag="CNE_1c02720"
/codon_start=1
/transl_table=11
/product="extra-cytoplasmic solute receptor"
/protein_id="YP_004684121.1"
/db_xref="GI:339324428"
/db_xref="GeneID:10916663"
/translation="MNRRAWLALAAGGLIGGFSLSLALPAAAQTYPAKPIRIVVPYVA
GGGTDTIARAMGEKLSKRLGQPVVVDNKAGASGIIGTDAVAKAAPDGYTLLMTLTQSV
LTNQFLYQKLPYDPRKDLTMISVLADAQLVLVAHPSVPARTVRELGEYARSRPGKLSY
ASWGVGSLSHLSGAYYSKLVHGQATHVPYKGEAPMMQDLLGGQVQFGFASILTAKPYI
QSGKLKALAVTGTQRSSALPDMPTFAESGMQDSAFKTVGWIGLVAPVGVPAPILARLE
GEVRAILQAPDMQERLVALGLRTVGSSPAEAQALYARDWPVLKTLVADSGAKLD"
misc_feature 270818..271723
/locus_tag="CNE_1c02720"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3181"
/db_xref="CDD:32994"
misc_feature 270896..271660
/locus_tag="CNE_1c02720"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene 272033..272500
/gene="bfr1"
/locus_tag="CNE_1c02730"
/db_xref="GeneID:10916664"
CDS 272033..272500
/gene="bfr1"
/locus_tag="CNE_1c02730"
/note="cytochrome b3"
/codon_start=1
/transl_table=11
/product="bacterioferritin"
/protein_id="YP_004684122.1"
/db_xref="GI:339324429"
/db_xref="GeneID:10916664"
/translation="MKSDKKVIQLLNGQLRHELTAINQYFLHARMYRHWGLGALGKHE
YEESIEEMKHADKLIERILLLDGLPNLQDLDKLLLGENTEEMLGCDLKLEQVSQASCK
EAIKFFESVGDYVSREIVVDILADTEEHIDWLEAQLELVNKVGLQNYIQSAMG"
misc_feature 272033..272497
/gene="bfr1"
/locus_tag="CNE_1c02730"
/note="Bacterioferritin (cytochrome b1) [Inorganic ion
transport and metabolism]; Region: Bfr; COG2193"
/db_xref="CDD:32376"
misc_feature 272036..272494
/gene="bfr1"
/locus_tag="CNE_1c02730"
/note="Bacterioferritin, ferritin-like diiron-binding
domain; Region: Bacterioferritin; cd00907"
/db_xref="CDD:153099"
misc_feature order(272075..272077,272099..272101,272120..272122,
272165..272167,272186..272188,272198..272200)
/gene="bfr1"
/locus_tag="CNE_1c02730"
/note="heme binding site [chemical binding]; other site"
/db_xref="CDD:153099"
misc_feature order(272081..272086,272090..272095,272105..272107,
272183..272185,272192..272194,272309..272314,
272321..272323,272333..272335,272408..272413)
/gene="bfr1"
/locus_tag="CNE_1c02730"
/note="ferroxidase pore; other site"
/db_xref="CDD:153099"
misc_feature order(272084..272086,272105..272107,272183..272185,
272192..272194,272312..272314,272333..272335,
272411..272413,272420..272422)
/gene="bfr1"
/locus_tag="CNE_1c02730"
/note="ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153099"
gene 272587..272661
/gene="trnC1"
/locus_tag="CNE_1c02740"
/note="tRNA-Cys-GCA"
/db_xref="GeneID:10916665"
tRNA 272587..272661
/gene="trnC1"
/locus_tag="CNE_1c02740"
/product="tRNA-Cys"
/codon_recognized="UGC"
/db_xref="GeneID:10916665"
gene 272981..273424
/locus_tag="CNE_1c02750"
/db_xref="GeneID:10916666"
CDS 272981..273424
/locus_tag="CNE_1c02750"
/EC_number="2.3.1.-"
/codon_start=1
/transl_table=11
/product="N-acetylglutamate synthase"
/protein_id="YP_004684123.1"
/db_xref="GI:339324430"
/db_xref="GeneID:10916666"
/translation="MIKDLRIRAAVPSDAPAVGSVLERCGLPVDDVARLLEHFHVAIL
GAQIIGCAAGERFGETVVIRSVAVLPEHRDQGVATHVVRAALMRARANGARRAVLLAS
SCPSYFARYGFTLVPAAKLPAEVMSSSEFHRHTDTPPLCMWCELD"
misc_feature 273095..273277
/locus_tag="CNE_1c02750"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(273176..273184,273212..273217)
/locus_tag="CNE_1c02750"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(273449..274438)
/gene="czcD1"
/locus_tag="CNE_1c02760"
/db_xref="GeneID:10916667"
CDS complement(273449..274438)
/gene="czcD1"
/locus_tag="CNE_1c02760"
/codon_start=1
/transl_table=11
/product="Co/Zn/Cd efflux system component CzcD"
/protein_id="YP_004684124.1"
/db_xref="GI:339324431"
/db_xref="GeneID:10916667"
/translation="MHSHDLSAWTHSHAFDAGNRAAERGTRLVMAITAATMVVEIAAG
LWFNSMALLADGWHMSSHALAIGLSAVAYAAARRYAGDRRFAFGTWKIEVLAGFASAV
FLLGIAALMAAGSVERLFSPQAIHYREAMAVTALGLLVNLGCALILGGHAHGHDHGHD
HGHHHHGHDHDHGHGHHHDINLRAAYMHVLADAATSVLALVALAGGWWLGWAWLDPVM
GLVGAALVGRWAVGLLRQSGTVLLDREMDHPVVEEVREMLAGLDPAYANGEERTRVTD
LHVWRVGRQQFACIACLVTHDPVLTPQRVREALSVHEELVHVTVEISRCDGAH"
misc_feature complement(273467..274429)
/gene="czcD1"
/locus_tag="CNE_1c02760"
/note="Co/Zn/Cd efflux system component [Inorganic ion
transport and metabolism]; Region: CzcD; COG1230"
/db_xref="CDD:31423"
misc_feature complement(273473..274336)
/gene="czcD1"
/locus_tag="CNE_1c02760"
/note="Cation efflux family; Region: Cation_efflux;
pfam01545"
/db_xref="CDD:201849"
gene complement(274818..276278)
/locus_tag="CNE_1c02770"
/db_xref="GeneID:10916668"
CDS complement(274818..276278)
/locus_tag="CNE_1c02770"
/EC_number="2.6.1.-"
/codon_start=1
/transl_table=11
/product="MocR family transcriptional regulator"
/protein_id="YP_004684125.1"
/db_xref="GI:339324432"
/db_xref="GeneID:10916668"
/translation="MLTLNLTRSRRDGDTLTEQIVAGIAALVEQRALRAGTALPSVRR
FAQHHHVSTFTVAEAYGRLTALGYLAARPGSGYTVAHRHAPAGRARAPHWEAPGLNAA
WLLSDVFADHSVPIKAGAGWLPGDWLNEEGLHQAMRASARVPAAQLSGYGHPYGFAPL
REHIAAGLGQYGIPLQAQQVVLTQGATQALDLVVRTLLRAGDTVLVESPCYCNLLQIL
RLAGLRVVGVPRSAAGLDTDALDDAIRAHAPRALFINTVLQNPTGASLSSMNAFRVLQ
LAEQHRLLVVEDDIYRELAPAGSPMLAAMDGLSQVVYINGFSKTITPSLRVGYLAASP
DLAKAFARTKMAVGLTSSEVTERLVYSVLTSGHYGRHVAALAERLRAQQDRVTEKMET
HGLEVLLRPEGGMFAWARLNEAAQARLQASRRGEPLHGNRLATLALEHGIWLAPGSYF
EPDETDSPWIRFNVATGDAPQLWQFFDRLAQAPRAA"
misc_feature complement(274821..276236)
/locus_tag="CNE_1c02770"
/note="Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino acid
transport and metabolism]; Region: ARO8; COG1167"
/db_xref="CDD:31361"
misc_feature complement(276042..276236)
/locus_tag="CNE_1c02770"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature complement(order(276048..276059,276063..276068,
276096..276098,276105..276110,276114..276128,
276150..276155,276159..276161,276228..276230,
276234..276236))
/locus_tag="CNE_1c02770"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature complement(274836..275876)
/locus_tag="CNE_1c02770"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(275301..275303,275322..275327,
275331..275333,275406..275408,275499..275501,
275646..275648,275718..275726))
/locus_tag="CNE_1c02770"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(275205..275207,275214..275216,
275301..275309,275427..275429,275616..275618,
275715..275717))
/locus_tag="CNE_1c02770"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(275322..275324)
/locus_tag="CNE_1c02770"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 276608..277939
/locus_tag="CNE_1c02780"
/db_xref="GeneID:10916669"
CDS 276608..277939
/locus_tag="CNE_1c02780"
/EC_number="2.6.1.18"
/codon_start=1
/transl_table=11
/product="omega-amino acid--pyruvate aminotransferase"
/protein_id="YP_004684126.1"
/db_xref="GI:339324433"
/db_xref="GeneID:10916669"
/translation="MDAAKTVIPDLDALWMPFTANRQYKAAPRLLASASGMYYTTHDG
RQIMDGCAGLWCVAAGHCRKEISEAVARQAATLDYAPPFQMGHPLSFEAATKVASIMP
QGLDRIFFTNSGSESVDTALKIALAYHRARGEGQRTRFIGRERGYHGVGFGGMAVGGI
GPNRRAFSANLMPGTDHLPATLNIAEAAFSKGQPQWGAHLADELERILALHDPSNVAA
VIVEPLAGSAGVLVPPVGYLEKLREITSKHGILLIFDEVITAFGRLGAATAAERFKVT
PDLITMAKAINNAAVPMGAVAVRREVHDTVVNSAAPGAIELLHGYTYSGHPLAAAAAI
ATLDLYQRENLFGRAAELAPVFEAAVHGVRSAPHVKDIRNYGLVAGIELEPRPGQPGA
RAYEAFLKCLELGVLVRYTGDILAFSPPLIISEAQIGELFDTVKKALQDIK"
misc_feature 276608..277936
/locus_tag="CNE_1c02780"
/note="beta alanine--pyruvate transaminase; Provisional;
Region: PRK09221"
/db_xref="CDD:181707"
misc_feature 276635..277924
/locus_tag="CNE_1c02780"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature order(276944..276952,277046..277051,277055..277057,
277271..277273,277370..277372,277376..277381,
277457..277459)
/locus_tag="CNE_1c02780"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(276947..276952,277046..277051,277271..277273,
277370..277372,277379..277381,277457..277459)
/locus_tag="CNE_1c02780"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 277457..277459
/locus_tag="CNE_1c02780"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene 278049..279566
/gene="mmsA1"
/locus_tag="CNE_1c02790"
/db_xref="GeneID:10916670"
CDS 278049..279566
/gene="mmsA1"
/locus_tag="CNE_1c02790"
/EC_number="1.2.1.27"
/codon_start=1
/transl_table=11
/product="methylmalonate-semialdehyde dehydrogenase MmsA"
/protein_id="YP_004684127.1"
/db_xref="GI:339324434"
/db_xref="GeneID:10916670"
/translation="MSIAENRQLAEIHHFIGGAVRRAGGQRHADVFNPATGEVAARVA
LGTTQDVADAVAAAQAAFPAWADTPPLRRARILFKFKELLDQHHDDLAALITREHGKV
FSDAKGEVTRGIEVVEFACGIPNLLKTDFTDNIGGGIDNWNLRQPLGVVAGITPFNFP
VMVPMWMFPVAIACGNTFVLKPSERDPSPSLLIADLLRQAGLPDGVFNVVQGDKEAVD
ALLAHPDVQALSFVGSTPIAEYIYTEGTKHGKRVQALGGAKNHLVVMPDADLDQAVDA
LIGAAYGSAGERCMAISVAVAVGDVADKLVPRLAERARTLKIRNGMESDAEMGPLVTG
AHKAKVEGYIAKGVQEGATLVTDGRGHKVDGHENGFYVGGTLFDNVKPDMTIYKEEIF
GPVLSVVRVHDFAEAVSLINAHEYGNGVSCYTSDGGIARAFARQIQVGMVGINVPIPV
PMAWHSFGGWKRSLFGDHHAYGEEGVRFYTRYKSVMQRWPDSIAKGAEFTMPVAK"
misc_feature 278082..279515
/gene="mmsA1"
/locus_tag="CNE_1c02790"
/note="Methylmalonate semialdehyde dehydrogenase and ALDH
family members 6A1 and 6B2; Region: ALDH_F6_MMSDH;
cd07085"
/db_xref="CDD:143404"
misc_feature 278082..279515
/gene="mmsA1"
/locus_tag="CNE_1c02790"
/note="methylmalonic acid semialdehyde dehydrogenase;
Region: MMSDH; TIGR01722"
/db_xref="CDD:130783"
misc_feature order(278253..278255,278259..278261,278271..278273,
278280..278282,278292..278294,278391..278393,
278400..278405,278430..278453,278466..278468,
278475..278477,278484..278486,278763..278765,
278775..278777,278784..278786,278793..278795,
278799..278801,279321..279323,279327..279332,
279336..279341,279348..279350,279357..279362,
279366..279368,279372..279383,279408..279410,
279420..279422,279426..279428,279468..279470,
279489..279506,279510..279515)
/gene="mmsA1"
/locus_tag="CNE_1c02790"
/note="tetrameric interface [polypeptide binding]; other
site"
/db_xref="CDD:143404"
misc_feature order(278511..278522,278544..278546,278589..278591,
278598..278600,278688..278690,278739..278750,
278757..278759,278811..278819,278913..278915,
279216..279218,279222..279224,279300..279302)
/gene="mmsA1"
/locus_tag="CNE_1c02790"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:143404"
misc_feature order(278520..278522,278811..278813,278904..278906,
278913..278915)
/gene="mmsA1"
/locus_tag="CNE_1c02790"
/note="catalytic residues [active]"
/db_xref="CDD:143404"
gene 279646..279996
/locus_tag="CNE_1c02800"
/db_xref="GeneID:10916671"
CDS 279646..279996
/locus_tag="CNE_1c02800"
/EC_number="4.4.1.5"
/codon_start=1
/transl_table=11
/product="lactoylglutathione lyase"
/protein_id="YP_004684128.1"
/db_xref="GI:339324435"
/db_xref="GeneID:10916671"
/translation="MNVRRIVANISAAEPSLARAFYQDVLGLDLLMDHGWIQTYGRDT
AMSVQVSVASEGGSGTPVPDLSIEVDDVNEAHRRMVAAGFAIEYGPADEPWGVRRFYV
RDPFGRLVNILRHA"
misc_feature 279658..279993
/locus_tag="CNE_1c02800"
/note="This conserved domain belongs to a superfamily
including the bleomycin resistance protein, glyoxalase I,
and type I ring-cleaving dioxygenases; Region:
Glo_EDI_BRP_like_5; cd07238"
/db_xref="CDD:176662"
misc_feature order(279658..279684,279688..279690,279697..279699,
279709..279711,279721..279723,279727..279729,
279748..279771,279790..279816,279829..279855,
279928..279930,279961..279963)
/locus_tag="CNE_1c02800"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:176662"
misc_feature 279697..279981
/locus_tag="CNE_1c02800"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
gene complement(280003..280167)
/locus_tag="CNE_1c02810"
/db_xref="GeneID:10916672"
CDS complement(280003..280167)
/locus_tag="CNE_1c02810"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684129.1"
/db_xref="GI:339324436"
/db_xref="GeneID:10916672"
/translation="MARARKLLAASTLPVEAIALKSGFASVQAFRACWNKGEAGTPSA
YRQASTCSAE"
misc_feature complement(280024..>280167)
/locus_tag="CNE_1c02810"
/note="Helix-turn-helix domain; Region: HTH_18; pfam12833"
/db_xref="CDD:205096"
gene complement(280301..281503)
/locus_tag="CNE_1c02820"
/db_xref="GeneID:10916673"
CDS complement(280301..281503)
/locus_tag="CNE_1c02820"
/EC_number="2.1.1.37"
/codon_start=1
/transl_table=11
/product="DNA (cytosine-5-)-methyltransferase"
/protein_id="YP_004684130.1"
/db_xref="GI:339324437"
/db_xref="GeneID:10916673"
/translation="MSLSSLVGQEYDWAMQRLQAFKYELMPNGEQQRNMRRYAGSCRF
VYNKALALQKQRYDQGEKKLSYAGLCKQLTEWRNSTETAWLADAPVHPLQQTLKDLER
AYTNFFAKRADFPRFKKKGLGDSFRYPDQKQIKLDQTNSRIFLPKLGWLRYRNSRDVL
GEVRNACVSLSGGKWFVSIQTERKVERPVPKATSAIGIDMGIARFATMSDGTFLAPLN
SFRKHEARLRRAQRAMSRKTKFSNNWKKSKARIQRIHARIGNARLDYLHKATTTISEN
QAMVCIEDLKVRNMSKSAAGSSGQPGKNVRAKSGLNKAILDQGWYEFGRQLEYKLAWN
GGWLIAVPPQHTSRTCPCCGHVSVENRQSQASFACVACGYANHADVVGAINILARGHR
VAACGESA"
misc_feature complement(281318..281452)
/locus_tag="CNE_1c02820"
/note="Helix-turn-helix domain; Region: HTH_OrfB_IS605;
pfam12323"
/db_xref="CDD:204881"
misc_feature complement(280304..281446)
/locus_tag="CNE_1c02820"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG0675"
/db_xref="CDD:31019"
misc_feature complement(280631..281257)
/locus_tag="CNE_1c02820"
/note="Probable transposase; Region: OrfB_IS605;
pfam01385"
/db_xref="CDD:189964"
misc_feature complement(280463..280726)
/locus_tag="CNE_1c02820"
/note="transposase, IS605 OrfB family, central region;
Region: tspaseT_teng_C; TIGR01766"
/db_xref="CDD:200129"
gene 281564..281815
/locus_tag="CNE_1c02830"
/db_xref="GeneID:10916674"
CDS 281564..281815
/locus_tag="CNE_1c02830"
/codon_start=1
/transl_table=11
/product="transposase IS200-family protein"
/protein_id="YP_004684131.1"
/db_xref="GI:339324438"
/db_xref="GeneID:10916674"
/translation="MEFDGEDDHVHLLVNYPPKVAVSALVNSLKGVSSRMIRKKNYPS
ISKKLWGGALWSPSYFAGSCGGAPIEIIRQYIEQQQTPH"
misc_feature <281567..281767
/locus_tag="CNE_1c02830"
/note="Transposase IS200 like; Region: Y1_Tnp; pfam01797"
/db_xref="CDD:201979"
gene complement(281860..282693)
/locus_tag="CNE_1c02840"
/db_xref="GeneID:10916675"
CDS complement(281860..282693)
/locus_tag="CNE_1c02840"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_004684132.1"
/db_xref="GI:339324439"
/db_xref="GeneID:10916675"
/translation="MTTAYFLVLPNVHMLDLGGPLQILSSVAELGLAPLTVRCVGPHS
SVTSFQGPALGRVERLPARLEAGDVVIAVGSKLLDTLTTSPAWHDSAAWLRDSFGEGR
NGGVQVAAVCTGAFLLGAAGLLDGRLCTTHHAHIKRLRARHPDASVIDNRVFVRDGNV
WTSAGVASGIDLALRLVANACGDEAAIAVARDNVVPFRRFGADPQLEPQFSARSHGNP
LVHAVQDAIARDLEANVADPRFAQRFAVSVRHLSRLFHEETGLTPKQYQLTRCAASLG
L"
misc_feature complement(282106..282681)
/locus_tag="CNE_1c02840"
/note="AraC transcriptional regulators having a Type 1
glutamine amidotransferase (GATase1)-like domain; Region:
GATase1_AraC_1; cd03137"
/db_xref="CDD:153231"
misc_feature complement(282358..282360)
/locus_tag="CNE_1c02840"
/note="conserved cys residue [active]"
/db_xref="CDD:153231"
gene 282858..284108
/locus_tag="CNE_1c02850"
/db_xref="GeneID:10916676"
CDS 282858..284108
/locus_tag="CNE_1c02850"
/codon_start=1
/transl_table=11
/product="MFS superfamily transporter"
/protein_id="YP_004684133.1"
/db_xref="GI:339324440"
/db_xref="GeneID:10916676"
/translation="MHRTRLPAVTVALVAIGFAVMFVSTAVRGLYQVYFVDLATHFGQ
GRAQFAWSGSVFMLATGLMSPVVGALSDRVGPLRTAAAGALAAGIALGSAALWPGSLT
FFVLMFGLAGAFGLAAMTFVPMGILVDRLFEERRKGLAYAVVTNGTAIGFVVLSPLWI
WLQPQAGWITAFGVAGAVFALPVAGALWLASRWEPASAPAPRTAEADVPAWTVVRRDP
VFYALAAGFFGCGATMAFIDVHLIAYWQGQGVPRLAMGYAMSTLGGLELASGLVSGAL
ALSWDKHRLLATFYALRSASMLLLLVPGLGVLPFAVGFGASYLGTVILTSMFCFERYG
SRIKGKVFGLLFLGHQLGAFLTVQLGAWSFDATRSYQDSITALVAVTLCSAACSWFGL
RRAGPLPALARGPAHAAVPEAASR"
misc_feature 282897..>283424
/locus_tag="CNE_1c02850"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 282903..>283637
/locus_tag="CNE_1c02850"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:191813"
misc_feature order(282939..282941,282948..282956,282960..282965,
283014..283016,283023..283028,283035..283037,
283047..283052,283056..283061,283206..283211,
283218..283223,283230..283235,283242..283244,
283278..283283,283290..283295,283311..283313)
/locus_tag="CNE_1c02850"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 284116..284319
/locus_tag="CNE_1c02860"
/db_xref="GeneID:10916677"
CDS 284116..284319
/locus_tag="CNE_1c02860"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684134.1"
/db_xref="GI:339324441"
/db_xref="GeneID:10916677"
/translation="MLPRLLLARAALAPLGLGAWALPWAPRARIAALAALALAGAALL
ALDPLAAALARVDGILSAPGCGG"
gene 284509..285906
/locus_tag="CNE_1c02870"
/db_xref="GeneID:10916678"
CDS 284509..285906
/locus_tag="CNE_1c02870"
/codon_start=1
/transl_table=11
/product="CAT family APC transporter"
/protein_id="YP_004684135.1"
/db_xref="GI:339324442"
/db_xref="GeneID:10916678"
/translation="MSLFRTKDIDAMLAVARDDGLKKVLGPIDLVMMGIGAIIGTGIF
VLTGTGALTAGPALTVSFVIAALSCGFAALCYAEFASAIPVSGSIYTYSYATLGEIVA
WMIGWDLLLEYGLATSAVSVGWSGYFQSLMAGFGLKLPAALSAAPGSVPGVKTMLNLP
ACLIMLAITWVVSYGVRESTRINNLMVAIKIGVVLLFIAVGVWHVQPANWQPFAPFGF
AGIFNAAALVFFAFIGFDAVTSAAEEVRNPRRDLPIGIIGSLAVCTVLYVVVAAIMTG
IVPFAKFAGVDHPVSLALQFAGQNWVAGFVDLGAILGMTTVILVMTYGQTRVIFAMSR
DGLLPERLSSVHPVHATPYFATWTVGIVFAAIAAFVPLNVLAELINIGTLAAFTLISV
AVLVLRKTRPELPRAFRCPGVPVVPLLSIGFCLFLMAHLQALTWIAFLVWLAVGLVIY
FGYARRNAVLHNHGG"
misc_feature 284569..285867
/locus_tag="CNE_1c02870"
/note="amino acid transporter; Region: 2A0306; TIGR00909"
/db_xref="CDD:129987"
misc_feature 284638..285735
/locus_tag="CNE_1c02870"
/note="Spore germination protein; Region: Spore_permease;
cl15802"
/db_xref="CDD:210202"
misc_feature 285730..285882
/locus_tag="CNE_1c02870"
/note="C-terminus of AA_permease; Region: AA_permease_C;
pfam13906"
/db_xref="CDD:206077"
gene complement(285913..287319)
/locus_tag="CNE_1c02880"
/db_xref="GeneID:10916679"
CDS complement(285913..287319)
/locus_tag="CNE_1c02880"
/EC_number="2.6.1.-"
/codon_start=1
/transl_table=11
/product="MocR family transcriptional regulator"
/protein_id="YP_004684136.1"
/db_xref="GI:339324443"
/db_xref="GeneID:10916679"
/translation="MKLILDASTGIPLTDQIVNGVKSWIGNREARPGAKLPSIRQLAA
ANGISRFPVIEAYDRLVSQGLLDSRQGSGFYVADSPLAGRSACGWSDPSLAEDLSDHI
LEQFNHPSGTLKLAGGFVPETWRDVEGLTQAIRAISRNEIDSVIHYATPMGHPELRRQ
VLLRVRQLGIAAELPQVLITTGASQALDLVVRHLLKPGDTVFVEDPGYYNLFGLLRLH
GVQLVGVPHTANGPDPDATEALLRQHKPKLFFTNSVLQNPTGSTLAPPVAFRLLELAR
RHGFRFVEDDIFSDFQTHFTDRLATLDQLEHVIYIGGFSKTVSASLRVGYLVADKALV
KDLVDVKVLTSVAGSHFAEAVTAALLERGGYRKYVERLRLRVREASANAVRQLTGNGW
EVFCQPSGGNFLWARPPGIEDSRELVTLGEAYGVTLAPGNYFRPGGETSAWIRINAAY
ANEPRAVAFMKAAAGRGS"
misc_feature complement(285928..287295)
/locus_tag="CNE_1c02880"
/note="Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino acid
transport and metabolism]; Region: ARO8; COG1167"
/db_xref="CDD:31361"
misc_feature complement(287089..287286)
/locus_tag="CNE_1c02880"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature complement(order(287098..287109,287113..287118,
287146..287148,287155..287160,287164..287178,
287200..287205,287209..287211,287278..287280,
287284..287286))
/locus_tag="CNE_1c02880"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature complement(285961..286917)
/locus_tag="CNE_1c02880"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(286351..286353,286372..286377,
286381..286383,286456..286458,286549..286551,
286696..286698,286768..286776))
/locus_tag="CNE_1c02880"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(286255..286257,286264..286266,
286351..286359,286477..286479,286666..286668,
286765..286767))
/locus_tag="CNE_1c02880"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(286372..286374)
/locus_tag="CNE_1c02880"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 287424..287867
/locus_tag="CNE_1c02890"
/db_xref="GeneID:10916680"
CDS 287424..287867
/locus_tag="CNE_1c02890"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684137.1"
/db_xref="GI:339324444"
/db_xref="GeneID:10916680"
/translation="MRIMEAWRRKAPAPVVIRHPGVGTGPDRRADEECDMRELRTFEL
DEPGQPVSWRAGYGQTVCAAAGKLWVTVEGNPTDIWLEPGAELPLPEGYRVWLSGDGA
GARFALAQVPAPWSLRRLAAWLRAMRHRVEEHSTDAFGECPRIWA"
misc_feature 287544..287735
/locus_tag="CNE_1c02890"
/note="Protein of unknown function (DUF2917); Region:
DUF2917; pfam11142"
/db_xref="CDD:151586"
gene 288148..291438
/gene="sbm"
/locus_tag="CNE_1c02900"
/db_xref="GeneID:10916681"
CDS 288148..291438
/gene="sbm"
/locus_tag="CNE_1c02900"
/EC_number="5.4.99.2"
/codon_start=1
/transl_table=11
/product="methylmalonyl-CoA mutase Sbm"
/protein_id="YP_004684138.1"
/db_xref="GI:339324445"
/db_xref="GeneID:10916681"
/translation="MTDLSDVHDVRRGAPQPKPTVQGRGPVNKVRFVTAASLFDGHDA
SINIMRRILQSHGCEVVHLGHNRSVEEVVTAALQEDAQGIAISSYQGGHVEFFKYMVD
LLREKGGEHIQVFGGGGGVIVPDEIRELQAYGVARIFSPEDGQRMGLAGMIADMVQRC
DIDLSRYAPATLEPVTGGDRRALAQLITALENGKADPALVDAMHAQAKQASIPVLGIT
GTGGAGKSSLTDELIRRFRLDQQDALSIAVISIDPSRRKSGGALLGDRIRMNAINHPN
IFMRSMATREAGSEISQALPDVIAACKVAGFDLVIVETSGIGQGDAAIVPHVDLSLYV
MTPEFGAASQLEKIDMLDFADFVAINKFDRKGAQDAWRDVAKQVQRNREQWHGKAEDM
PVYGTQASRFNDDGVTMLYQGLRAALAERGLKLQPGVLPAQAGRISTGQNVIVPPARS
RYLAELADTVRGYHRRVMTQSRLARERQQLRESSRMLQAAQGDGAALDALAAERESAL
GQVERKLLAMWPQMREAYSGDEYVVRIRDKEIRTGLVTTTLSGTKVRKVVLPRFEDDG
EVLKWLMRENVPGSFPYTAGVFAFKRENEDPTRMFAGEGDAFRTNRRFKLVSEGMDAK
RLSTAFDSVTLYGEDPHVRPDIYGKVGNSGVSIATLDDLKVLYDGFDLTSPSTSVSMT
INGPAPTILAMFMNTAIDQQLDKFRADNQREPTADEEAKIRAWVLQNVRGTVQADILK
EDQGQNTCIFSTEFSLKVMGDIQEYFVHHQVRNFYSVSISGYHIAEAGANPISQLAFT
LSNGFTYVEAYLARGMHIDDFAPNLSFFFSNGMDPEYGVLGRVARRIWAVTMRDKYGA
NERSQKLKYHIQTSGRSLHAQEIDFNDIRTTLQALIAIYDNCNSLHTNAYDEAITTPT
GESVRRALAIQLIINREWGVAKCENPNQGSFLMEELTDLVEEAVLQEFERIAERGGVL
GAMETGYQRGKIQEESLYYEQLKHDGTLPIIGVNTFRNPDGDPTPQKLELARSSEAEK
LSQLDRLQAFQQAHAAEAPAMLAQLRQAVIDNQNVFAVLMDAVRVCSLGQITHALFEV
GGQYRRNM"
misc_feature 288238..288609
/gene="sbm"
/locus_tag="CNE_1c02900"
/note="methylmalonyl CoA mutase B12 binding domain. This
domain binds to B12 (adenosylcobamide), which initiates
the conversion of succinyl CoA and methylmalonyl CoA by
forming an adenosyl radical, which then undergoes a
rearrangement exchanging a hydrogen atom...; Region:
MM_CoA_mut_B12_BD; cd02071"
/db_xref="CDD:30209"
misc_feature order(288262..288282,288289..288291,288400..288408,
288412..288420,288508..288510,288562..288564,
288571..288573,288589..288591)
/gene="sbm"
/locus_tag="CNE_1c02900"
/note="B12 binding site [chemical binding]; other site"
/db_xref="CDD:30209"
misc_feature 288271..288273
/gene="sbm"
/locus_tag="CNE_1c02900"
/note="cobalt ligand [ion binding]; other site"
/db_xref="CDD:30209"
misc_feature 288787..289236
/gene="sbm"
/locus_tag="CNE_1c02900"
/note="The function of this protein family is unkown. The
protein sequences are similar to the ArgK protein in E.
coli. ArgK protein is a membrane ATPase which is required
for transporting arginine, ornithine and lysine into the
cells by the arginine and...; Region: ArgK-like; cd03114"
/db_xref="CDD:48378"
misc_feature 288802..288828
/gene="sbm"
/locus_tag="CNE_1c02900"
/note="Walker A; other site"
/db_xref="CDD:48378"
misc_feature 289690..291204
/gene="sbm"
/locus_tag="CNE_1c02900"
/note="Coenzyme B12-dependent-methylmalonyl coenzyme A
(CoA) mutase (MCM) family, unknown subfamily 1; composed
of uncharacterized bacterial proteins containing a
C-terminal MCM domain. MCM catalyzes the isomerization of
methylmalonyl-CoA to succinyl-CoA. The...; Region:
MM_CoA_mutase_1; cd03678"
/db_xref="CDD:58153"
misc_feature 289732..291435
/gene="sbm"
/locus_tag="CNE_1c02900"
/note="Methylmalonyl-CoA mutase, N-terminal domain/subunit
[Lipid metabolism]; Region: Sbm; COG1884"
/db_xref="CDD:32068"
misc_feature order(289936..289938,289942..289944,289948..289950,
290026..290028,290035..290037,290041..290043,
290050..290052,290104..290106,290185..290187,
290191..290193,290344..290346,290377..290382,
290494..290496,290503..290505,290611..290613,
290617..290619,290623..290625,290737..290739,
290743..290745,290749..290751,290758..290763,
290842..290844,290869..290871,290878..290883)
/gene="sbm"
/locus_tag="CNE_1c02900"
/note="putative active site [active]"
/db_xref="CDD:58153"
misc_feature order(289936..289938,289942..289944,289948..289950,
290026..290028,290185..290187,290191..290193,
290344..290346,290380..290382,290491..290496,
290611..290613,290617..290619,290623..290625,
290737..290739,290743..290745,290749..290751,
290842..290844)
/gene="sbm"
/locus_tag="CNE_1c02900"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:58153"
misc_feature order(289948..289950,290035..290037,290041..290043,
290050..290052,290104..290106,290377..290382,
290386..290388,290503..290505,290758..290763,
290869..290874,290878..290883)
/gene="sbm"
/locus_tag="CNE_1c02900"
/note="putative coenzyme B12 binding site [chemical
binding]; other site"
/db_xref="CDD:58153"
gene 291580..292017
/locus_tag="CNE_1c02910"
/db_xref="GeneID:10916682"
CDS 291580..292017
/locus_tag="CNE_1c02910"
/EC_number="3.6.1.17"
/codon_start=1
/transl_table=11
/product="diadenosine tetraphosphate (Ap4A) hydrolase"
/protein_id="YP_004684139.1"
/db_xref="GI:339324446"
/db_xref="GeneID:10916682"
/translation="MDTQYNPTNIFAKILRGELPCIKVYEDDDTIAFMDIMPQADGHT
LVVPKEAAVNLFDLSEQGAQAAIVATQRVARAVRAAFAPDGISIGQFNGAAAGQTVPH
VHFHIVPRYADSALRGHAREMQDPEQLKGHAERIIAALREQGA"
misc_feature 291601..291909
/locus_tag="CNE_1c02910"
/note="HINT (histidine triad nucleotide-binding protein)
subgroup: Members of this CD belong to the superfamily of
histidine triad hydrolases that act on alpha-phosphate of
ribonucleotides. This subgroup includes members from all
three forms of cellular life; Region: HINT_subgroup;
cd01277"
/db_xref="CDD:29590"
misc_feature order(291883..291885,291889..291891,291895..291903)
/locus_tag="CNE_1c02910"
/note="HIT family signature motif; other site"
/db_xref="CDD:29590"
misc_feature 291889..291891
/locus_tag="CNE_1c02910"
/note="catalytic residue [active]"
/db_xref="CDD:29590"
gene 292070..292924
/gene="paaH1"
/locus_tag="CNE_1c02920"
/db_xref="GeneID:10916683"
CDS 292070..292924
/gene="paaH1"
/locus_tag="CNE_1c02920"
/EC_number="1.1.1.35"
/codon_start=1
/transl_table=11
/product="3-hydroxyacyl-CoA dehydrogenase"
/protein_id="YP_004684140.1"
/db_xref="GI:339324447"
/db_xref="GeneID:10916683"
/translation="MSIRTVGIVGAGTMGNGIAQACAVVGLNVVMVDISDAAVQKGVA
TVAGSLDRLIKKEKLTEADKASALARIKGSTSYDDLKATDIVIEAATENYDLKVKILK
QIDSIVGENVIIASNTSSISITKLAAVTSRADRFIGMHFFNPVPVMALVELIRGLQTS
DTTHAAVEALSKQLGKYPITVRNSPGFVVNRILCPMINEAFCVLGEGLASPEEIDEGM
KLGCNHPIGPLALADMIGLDTMLAVMEVLYTEFADPKYRPAMLLREMVAAGYLGRKTG
RGVYVYSK"
misc_feature 292070..292915
/gene="paaH1"
/locus_tag="CNE_1c02920"
/note="3-hydroxybutyryl-CoA dehydrogenase; Validated;
Region: PRK05808"
/db_xref="CDD:180269"
misc_feature 292082..292621
/gene="paaH1"
/locus_tag="CNE_1c02920"
/note="3-hydroxyacyl-CoA dehydrogenase, NAD binding
domain; Region: 3HCDH_N; pfam02737"
/db_xref="CDD:202367"
misc_feature order(292115..292117,292127..292129,292184..292186,
292196..292198,292217..292222,292247..292255)
/gene="paaH1"
/locus_tag="CNE_1c02920"
/note="LDH/MDH dimer interface [polypeptide binding];
other site"
/db_xref="CDD:133419"
misc_feature 292625..292915
/gene="paaH1"
/locus_tag="CNE_1c02920"
/note="3-hydroxyacyl-CoA dehydrogenase, C-terminal domain;
Region: 3HCDH; pfam00725"
/db_xref="CDD:201415"
gene 293107..293439
/locus_tag="CNE_1c02930"
/db_xref="GeneID:10916684"
CDS 293107..293439
/locus_tag="CNE_1c02930"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684141.1"
/db_xref="GI:339324448"
/db_xref="GeneID:10916684"
/translation="MAHPILFAALLAGAMSLLAARSAMAHVDVGVQVGAPVYVAPAPV
YVAPPPPVVYAPRYHGWHGDRYWDGRRWYGRGEWRGRHHHSHHYRDYDRHYGRGHGHG
HGHRGHGH"
gene complement(293487..293909)
/locus_tag="CNE_1c02940"
/db_xref="GeneID:10916685"
CDS complement(293487..293909)
/locus_tag="CNE_1c02940"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684142.1"
/db_xref="GI:339324449"
/db_xref="GeneID:10916685"
/translation="MASAIDAATLQAYRETHYRVLGDLPMILRVDQPSAPLAALHRAL
GVASSAFITAANPFSLRCDDDANARRQQALARDVAKMGLRAIEAAGEHPANGWPAEPS
FLVPGLSLEDARALGEKYEQNAVVWSGADAVPRLVLLR"
misc_feature complement(293535..293756)
/locus_tag="CNE_1c02940"
/note="Protein of unknown function (DUF3293); Region:
DUF3293; pfam11697"
/db_xref="CDD:192793"
gene complement(293911..294579)
/gene="crp"
/locus_tag="CNE_1c02950"
/db_xref="GeneID:10916686"
CDS complement(293911..294579)
/gene="crp"
/locus_tag="CNE_1c02950"
/codon_start=1
/transl_table=11
/product="CRP family transcriptional regulator"
/protein_id="YP_004684143.1"
/db_xref="GI:339324450"
/db_xref="GeneID:10916686"
/translation="MLNDFVDRCVWAADLSPEQRERVRRAMFVHEYTQGDYVCHKGDM
AEHWMGVLEGIVKITTVSPSGKSVTFTGVPTGGWFGEGAVLKSEIRKYDVMALRRSTI
AFLPRDTFLWLLDTSLPFTRFLLTQFNERLGQFIAAVEYERLLDIDSRVARAVSSLFN
EHLYPGIGTTLEISQEEIGLLAGISRQRANQALKVLEQQGLVRVDYGVIEVLDLEGLR
QYGE"
misc_feature complement(294205..294543)
/gene="crp"
/locus_tag="CNE_1c02950"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:28920"
misc_feature complement(293941..294537)
/gene="crp"
/locus_tag="CNE_1c02950"
/note="cAMP-binding proteins - catabolite gene activator
and regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms]; Region: Crp; COG0664"
/db_xref="CDD:31008"
misc_feature complement(order(294304..294312,294337..294342))
/gene="crp"
/locus_tag="CNE_1c02950"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:28920"
misc_feature complement(order(294220..294228,294238..294246))
/gene="crp"
/locus_tag="CNE_1c02950"
/note="flexible hinge region; other site"
/db_xref="CDD:28920"
misc_feature complement(293920..294132)
/gene="crp"
/locus_tag="CNE_1c02950"
/note="Crp-like helix-turn-helix domain; Region:
HTH_Crp_2; pfam13545"
/db_xref="CDD:205723"
misc_feature complement(294127..294132)
/gene="crp"
/locus_tag="CNE_1c02950"
/note="putative switch regulator; other site"
/db_xref="CDD:28976"
misc_feature complement(order(294025..294027,294052..294060,
294064..294066))
/gene="crp"
/locus_tag="CNE_1c02950"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:28976"
misc_feature complement(294007..294027)
/gene="crp"
/locus_tag="CNE_1c02950"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28976"
misc_feature complement(order(294007..294009,294019..294024))
/gene="crp"
/locus_tag="CNE_1c02950"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28976"
misc_feature complement(294019..294024)
/gene="crp"
/locus_tag="CNE_1c02950"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:28976"
gene complement(294652..294816)
/locus_tag="CNE_1c02960"
/db_xref="GeneID:10916687"
CDS complement(294652..294816)
/locus_tag="CNE_1c02960"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684144.1"
/db_xref="GI:339324451"
/db_xref="GeneID:10916687"
/translation="MSSAGPVVILGLLCPAAIAARHQARCALHQAAGKACALPRRAAG
GTRGSVVIVR"
gene 294856..296814
/locus_tag="CNE_1c02970"
/db_xref="GeneID:10916688"
CDS 294856..296814
/locus_tag="CNE_1c02970"
/EC_number="6.2.1.3"
/note="AMP-forming"
/codon_start=1
/transl_table=11
/product="long-chain acyl-CoA synthetase"
/protein_id="YP_004684145.1"
/db_xref="GI:339324452"
/db_xref="GeneID:10916688"
/translation="MQESSATTFPRWLLAHAQQRPDHPAHREKDLGIWQTYSWAQAAQ
QVRALACGLAALGFRRGMNLAVVGDNRPRLYWAMTAAQALGGVPVPLYQDAIANEMVY
VLNDAEIEFAIVEDQEQVDKLLEVEAQLAESGRAVRHVIFEDPRGLMDYDHPSLMSYE
RLQELGREFDQAHPGFYDEAIAAGQPDDTAIILYTSGTTGKPKGVCHSHYGLIGAARN
GCAFDKLSADDDVLSYLPMAWVGDNLFSYAQAMVAGFTVNCPESRETVMTDLREIGPT
YYFAPPRIYEGLLTQVMIRMEDAGWIKRKLFHWAMDVAKRCGTDILDGQPVSLADRAR
YALGEVLVYGPLRNVLGMSRIRVGYTAGEAIGPDLFRFYRSIGVNLKQFYGQTETCAY
VCLQPDGKVKFDSVGPAAPGMEIRIADNGEVLVRGVGLLKSYYKRDDATREAINDEGY
FMTGDAGVIDADGHLKIIDRAKDVGKLADGSMFAPKYIENKLKFFPYIKEAVAFGSDR
DQVCAFINIDFEAVGNWAERRHLPYAGYVDLAAQPDVLEMIGECVNQVNADLANDPML
AGSQVARFLVLHKELDPDDDELTRTRKVRRGFIADKYGVLVEALYAGKSEQFIETRVK
FEDGREGSVSATLKLVNAKRLPVAARAA"
misc_feature 294877..296700
/locus_tag="CNE_1c02970"
/note="Long-chain acyl-CoA synthetases (AMP-forming)
[Lipid metabolism]; Region: FAA1; COG1022"
/db_xref="CDD:31225"
misc_feature 294967..296364
/locus_tag="CNE_1c02970"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
gene 296829..297791
/gene="livG2"
/locus_tag="CNE_1c02980"
/db_xref="GeneID:10916689"
CDS 296829..297791
/gene="livG2"
/locus_tag="CNE_1c02980"
/codon_start=1
/transl_table=11
/product="high-affinity branched-chain amino acid
transport ATP-binding protein LivG"
/protein_id="YP_004684146.1"
/db_xref="GI:339324453"
/db_xref="GeneID:10916689"
/translation="MTQVAWQGAGQREWAGTARTDASGTGSGGAIAPAGPMSPAGLAD
DSGAHPGTQRAQRTGEQARTGGEVILDLQHISLSFGGVKALTDISFDVCEHEVRAIIG
PNGAGKSSMLNVINGVYHPQQGRIVFRGEERKQMHPTAAARQGIARTFQNIALFKGMT
VLDNIMTGRNTQFRTGLFAHALWWGPARNEEMRHRQKVEEVIDFLEIQSIRKTPVGRL
PYGLQKRVELARALAAEPSMLLLDEPMAGMNVEEKQDMCRFILDVNRQFGTTIVLIEH
DMGVVMDISDRVVVLDYGKKIGDGTPDEVKGNPDVIKAYLGTSH"
misc_feature 297027..297782
/gene="livG2"
/locus_tag="CNE_1c02980"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivG; COG0411"
/db_xref="CDD:30760"
misc_feature 297036..297761
/gene="livG2"
/locus_tag="CNE_1c02980"
/note="The Mj1267/LivG ABC transporter subfamily is
involved in the transport of the hydrophobic amino acids
leucine, isoleucine and valine. MJ1267 is a
branched-chain amino acid transporter with 29% similarity
to both the LivF and LivG components of the E; Region:
ABC_Mj1267_LivG_branched; cd03219"
/db_xref="CDD:72978"
misc_feature 297132..297155
/gene="livG2"
/locus_tag="CNE_1c02980"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72978"
misc_feature order(297141..297146,297150..297158,297279..297281,
297552..297557,297654..297656)
/gene="livG2"
/locus_tag="CNE_1c02980"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72978"
misc_feature 297270..297281
/gene="livG2"
/locus_tag="CNE_1c02980"
/note="Q-loop/lid; other site"
/db_xref="CDD:72978"
misc_feature 297480..297509
/gene="livG2"
/locus_tag="CNE_1c02980"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72978"
misc_feature 297540..297557
/gene="livG2"
/locus_tag="CNE_1c02980"
/note="Walker B; other site"
/db_xref="CDD:72978"
misc_feature 297564..297575
/gene="livG2"
/locus_tag="CNE_1c02980"
/note="D-loop; other site"
/db_xref="CDD:72978"
misc_feature 297642..297662
/gene="livG2"
/locus_tag="CNE_1c02980"
/note="H-loop/switch region; other site"
/db_xref="CDD:72978"
gene 297803..298717
/gene="livH2"
/locus_tag="CNE_1c02990"
/db_xref="GeneID:10916690"
CDS 297803..298717
/gene="livH2"
/locus_tag="CNE_1c02990"
/codon_start=1
/transl_table=11
/product="high-affinity branched-chain amino acid
transport system permease LivH"
/protein_id="YP_004684147.1"
/db_xref="GI:339324454"
/db_xref="GeneID:10916690"
/translation="MTFFFEILIGGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVY
FAALAVVGLMDKGLPMWAAVIGAFVVMILVGMSTERFVLRKLVNQPPITLFMATIGLS
FFLEGLGPLLFGNEVRPINLGIVDEPIESILTNFNIVLSKFDIAAAAIAGVLVGSLAL
FFQYTKVGRALRAVADDHQAALSLGIPLQNIWAIVWGVAGFVALVAGMLWGSRNGVQF
ALTLTALKALPVLILGGFTSVPGAIVGGLIIGASEKLAEIYIPPVFQSMFGGNFGGIE
GWFPYVFALLFLLVRPEGLFGEKHIDRV"
misc_feature 297833..298690
/gene="livH2"
/locus_tag="CNE_1c02990"
/note="Transmembrane subunit (TM) of Escherichia coli LivH
and related proteins. LivH is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivH_like;
cd06582"
/db_xref="CDD:119324"
misc_feature 298337..298393
/gene="livH2"
/locus_tag="CNE_1c02990"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119324"
gene 298742..299818
/gene="livM2"
/locus_tag="CNE_1c03000"
/db_xref="GeneID:10916691"
CDS 298742..299818
/gene="livM2"
/locus_tag="CNE_1c03000"
/codon_start=1
/transl_table=11
/product="high-affinity branched-chain amino acid
transport system permease LivM"
/protein_id="YP_004684148.1"
/db_xref="GI:339324455"
/db_xref="GeneID:10916691"
/translation="MFYREAGQFKTSYVADSQIFPIRQDRIGFAVLMAVAFVAIPFVG
SEYWFSAILIPFLIFSLAALGLNILTGYAGQLSLGTAAFMAVGAYAAYNFQLRIEGIP
VLLSFLLAGLSAALVGVAFGLPSLRIKGFYLAVATLAAQFFVVWALTKFPWFSNNSSS
GVITAQRLDLFGVAIDTPLKKYLFVLAIVTVLALAAKNLVRSATGRAWMSVRDMDVAA
EVIGIPLMRTKLLAFAVSSFYCGVAGALYAFCYLGSVEPDGFSLDLSFRVLFMIIIGG
VGSILGSFLGAAFILLLPIFLDNVLPPLAALLHLPFTNATVSHIQLMVFGGLIIFFLI
VEPHGLARLWQIAKEKLRLWPFPH"
misc_feature 298907..299764
/gene="livM2"
/locus_tag="CNE_1c03000"
/note="Transmembrane subunit (TM) of Escherichia coli LivM
and related proteins. LivM is one of two TMs of the E.
coli LIV-1/LS transporter, a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of...; Region: TM_PBP1_LivM_like;
cd06581"
/db_xref="CDD:119323"
misc_feature 299387..299443
/gene="livM2"
/locus_tag="CNE_1c03000"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119323"
gene 299910..301247
/locus_tag="CNE_1c03010"
/db_xref="GeneID:10916692"
CDS 299910..301247
/locus_tag="CNE_1c03010"
/codon_start=1
/transl_table=11
/product="HAAT family ABC transporter permease"
/protein_id="YP_004684149.1"
/db_xref="GI:339324456"
/db_xref="GeneID:10916692"
/translation="MTNLIRNVQRAALVVSAAAALLAPAAPAMAQSNEQFVALPSYRV
GPYGANGQSWYGGFIDYLNYVNLKEGGVNGVKLSWEECETEYNNAKGVECYERLKSKN
ATTKGTAYHAMSTGISYALVDKTAADKVPLVMMGYGRTDAVDGSVFPYAFPLVTTYQM
QVSAIVKYLASKNGGSLAGKKIVYLYHDSAYGKEPIVALQAEAKLGKFNLVEIPVAHP
GNEQGAQWLKIRQENPDYVIFWGWGVMNQTALKAAQKVGFARDKIIGSWWAGSEEDTV
PAGDASKGYMSATWNVAGRNVPLIADIDKVVYGAGKGNMQDKNKVGSVLYNRGVSAAV
VTVEAVRVAQAKFGKGKPMTGEQMRWAFENLNLTNARLQQLGATGLLPEIKTSCDNHE
GSGKVKIQQWDGTKWVVVSDWIEGNKSLIHPLFKATAAQYAKEKGITPACSKS"
misc_feature 300015..301094
/locus_tag="CNE_1c03010"
/note="Type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type active
transport systems that are predicted to be involved in
transport of amino acids, peptides, or inorganic ions;
Region: PBP1_ABC_ligand_binding_like_1; cd06334"
/db_xref="CDD:107329"
misc_feature 300018..301121
/locus_tag="CNE_1c03010"
/note="Periplasmic binding protein; Region: Peripla_BP_6;
pfam13458"
/db_xref="CDD:205636"
misc_feature order(300246..300254,300315..300323,300480..300482,
300633..300635,300708..300710)
/locus_tag="CNE_1c03010"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:107329"
gene 301441..302259
/gene="livF2"
/locus_tag="CNE_1c03020"
/db_xref="GeneID:10916693"
CDS 301441..302259
/gene="livF2"
/locus_tag="CNE_1c03020"
/codon_start=1
/transl_table=11
/product="high-affinity branched-chain amino acid
transport system ATP-binding protein LivF"
/protein_id="YP_004684150.1"
/db_xref="GI:339324457"
/db_xref="GeneID:10916693"
/translation="MSLLSVNNIEVIYDHVILVLKGVSLEVPEGKIVALLGANGAGKT
TTLKAISNLLQAERGDVTKGSIEYRGDRVDQLTPNDLVRRGVIQVMEGRHCFAHLTIE
ENLLTGAYTRGLSRGQTRDELEKIYEYFPRLKTRRKSQAGYTSGGEQQMCAIGRAMMA
KPAMILLDEPSMGLAPQIVEEIFEIVRGLNSRENVSFLLAEQNTMVALRYADYGYILE
NGRVVMDGDAESLRTNEDVKEFYLGVAANDADDGAGRKSFRDVKSYRRRKRWLA"
misc_feature 301441..302166
/gene="livF2"
/locus_tag="CNE_1c03020"
/note="ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism]; Region: LivF; COG0410"
/db_xref="CDD:30759"
misc_feature 301450..302142
/gene="livF2"
/locus_tag="CNE_1c03020"
/note="LivF (TM1139) is part of the LIV-I bacterial
ABC-type two-component transport system that imports
neutral, branched-chain amino acids. The E. coli
branched-chain amino acid transporter comprises a
heterodimer of ABC transporters (LivF and LivG), a...;
Region: ABC_TM1139_LivF_branched; cd03224"
/db_xref="CDD:72983"
misc_feature 301549..301572
/gene="livF2"
/locus_tag="CNE_1c03020"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72983"
misc_feature order(301558..301563,301567..301575,301711..301713,
301942..301947,302044..302046)
/gene="livF2"
/locus_tag="CNE_1c03020"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72983"
misc_feature 301702..301713
/gene="livF2"
/locus_tag="CNE_1c03020"
/note="Q-loop/lid; other site"
/db_xref="CDD:72983"
misc_feature 301870..301899
/gene="livF2"
/locus_tag="CNE_1c03020"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72983"
misc_feature 301930..301947
/gene="livF2"
/locus_tag="CNE_1c03020"
/note="Walker B; other site"
/db_xref="CDD:72983"
misc_feature 301954..301965
/gene="livF2"
/locus_tag="CNE_1c03020"
/note="D-loop; other site"
/db_xref="CDD:72983"
misc_feature 302032..302052
/gene="livF2"
/locus_tag="CNE_1c03020"
/note="H-loop/switch region; other site"
/db_xref="CDD:72983"
gene 302352..303602
/locus_tag="CNE_1c03030"
/db_xref="GeneID:10916694"
CDS 302352..303602
/locus_tag="CNE_1c03030"
/EC_number="6.2.1.-"
/codon_start=1
/transl_table=11
/product="coenzyme F390 synthetase"
/protein_id="YP_004684151.1"
/db_xref="GI:339324458"
/db_xref="GeneID:10916694"
/translation="MPEHFDSLETRAPEVREQALLAALARQVAHARDNAPYFAEMLSG
VDPRLLTSRAALAALPVTRKSDLTARQRLLPPLGGLNATPLGKLRHVFQSPGPIHEPD
GHDADWWRVARAMHAAGFRAGELVYNTFSYHFTPAGMMMETGAHRLGCCVFPAGVGQT
DSQVQALASLQPTAYAGTPSFLKLLLERGDELGTPCTSLAKALVSGEALPPSLRAWFQ
ARGVRVQQMYGTADVGLIAYETEGGDGWVVDEGVLVEIVEPGGSRPMPEGETGEVVVT
VLGNGDYPLIRFGTGDLSAIVAESSQRPSPCGRTNIRLKGWLGRADQATKVKGMFVHP
GQVADVLRRHPEIRVARLVVTGDPGADVMTLRCEATREDGDLQRAVAESLREVMRLRG
EVAFVAAGSLPQDGKLIEDARSYD"
misc_feature 302439..303575
/locus_tag="CNE_1c03030"
/note="phenylacetate-CoA ligase; Region: PA_CoA_ligase;
TIGR02155"
/db_xref="CDD:131210"
misc_feature <302682..>303062
/locus_tag="CNE_1c03030"
/note="AMP-binding enzyme; Region: AMP-binding; cl15778"
/db_xref="CDD:212383"
gene complement(303734..304102)
/locus_tag="CNE_1c03040"
/db_xref="GeneID:10916695"
CDS complement(303734..304102)
/locus_tag="CNE_1c03040"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684152.1"
/db_xref="GI:339324459"
/db_xref="GeneID:10916695"
/translation="MWVVLGAAFLLLGVIGIFLPVLPTTPFVLLAAACFARGSQRFHE
WLLGHPRFGPLVSDWQRYRSIPLRAKCLALSMMWASMGTTAWLLRARPIASAALLACA
VGVSVWMVRLPTRPVEGGKS"
misc_feature complement(303767..303979)
/locus_tag="CNE_1c03040"
/note="Protein of unknown function (DUF454); Region:
DUF454; pfam04304"
/db_xref="CDD:202965"
gene complement(304235..305212)
/gene="nppD"
/locus_tag="CNE_1c03050"
/db_xref="GeneID:10916696"
CDS complement(304235..305212)
/gene="nppD"
/locus_tag="CNE_1c03050"
/EC_number="1.13.11.-"
/codon_start=1
/transl_table=11
/product="2-nitropropane dioxygenase"
/protein_id="YP_004684153.1"
/db_xref="GI:339324460"
/db_xref="GeneID:10916696"
/translation="MPAAKQLPQALQNLALPVIASPMFIVSYPELVLAQCKAGIVGSF
PALNARPAELLDEWLTQIEGELATFKAANPGAQVGPVAVNQIVHTSNARLEHDVKVCV
DHKVPIFITSLRAPVKEMIDAVHSYGGIVLHDVISLRHAEKAIEAGVDGLILVAAGAG
GHAGMLSPFALVGEVRKIFDGPIALSGSIATGEAVLAAQAMGADFAYVGTRFIASQEA
HAAETYKQSITSSAAADIIYTNLFTGVHGNYIRESISNVGLDPDNLPVADKSKMDFSS
GASKAKAWKDVWGAGQGVGQIHDIPTAGEIVVRMKAEYDAAKARLGIAH"
misc_feature complement(304244..305161)
/gene="nppD"
/locus_tag="CNE_1c03050"
/note="Dioxygenases related to 2-nitropropane dioxygenase
[General function prediction only]; Region: COG2070"
/db_xref="CDD:32253"
misc_feature complement(304463..305161)
/gene="nppD"
/locus_tag="CNE_1c03050"
/note="2-Nitropropane dioxygenase (NPD), one of the
nitroalkane oxidizing enzyme families, catalyzes oxidative
denitrification of nitroalkanes to their corresponding
carbonyl compounds and nitrites. NDP is a member of the
NAD(P)H-dependent flavin oxidoreductase...; Region:
NPD_like; cd04730"
/db_xref="CDD:73392"
misc_feature complement(order(304583..304594,304649..304657,
304733..304738,304748..304750,304811..304813,
304877..304879,304955..304957,305144..305149))
/gene="nppD"
/locus_tag="CNE_1c03050"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73392"
misc_feature complement(304727..304732)
/gene="nppD"
/locus_tag="CNE_1c03050"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73392"
misc_feature complement(304727..304729)
/gene="nppD"
/locus_tag="CNE_1c03050"
/note="putative catalytic residue [active]"
/db_xref="CDD:73392"
gene complement(305338..306774)
/gene="creC"
/locus_tag="CNE_1c03060"
/db_xref="GeneID:10916697"
CDS complement(305338..306774)
/gene="creC"
/locus_tag="CNE_1c03060"
/EC_number="2.7.13.3"
/codon_start=1
/transl_table=11
/product="sensor protein CreC"
/protein_id="YP_004684154.1"
/db_xref="GI:339324461"
/db_xref="GeneID:10916697"
/translation="MHIGLRIFFGFFLIVGLATVLTLRVFVQEVKPGVRQAMEDTLID
TAHVLAALAADDMKAGRIADGEFARHMAALRDLPVDADVSGLHKDSIGYRIYVTDARG
IVRFDSTGTDVGRDYSRWNDVYLTLRGKYGARSTRTDPDDEASTVMHVAAPIRDGDGE
RIIGVLTVAKPNAAMAPFIERSQRKILLYGGLLIGAACVIGLACTLWLAHGLSRLRGY
ARAVAAGERAEMPLRGGSELAELGRAVQGMRERLEDKQYVEHYIHTLTHEMKSPLAAI
GGAAELLQEEMPAADRQRFVANIRAQSGRLETMIRKLLALADVEQRQRLEVREPVRLA
PLLAQLGSELEPRARQRGVTLRLAADASPDLVAGDPFLLRQAIANLLENAIDFAPPDS
EVTVRLERRGGALAIAVADQGPGIPDYALPRVFERFYSLPRPHGADKSTGLGLCFARE
VATLHHGDVTLANRPGGGALAELTLPAA"
misc_feature complement(305341..306723)
/gene="creC"
/locus_tag="CNE_1c03060"
/note="sensory histidine kinase CreC; Provisional; Region:
PRK11100"
/db_xref="CDD:182962"
misc_feature complement(306013..306153)
/gene="creC"
/locus_tag="CNE_1c03060"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature complement(order(306019..306024,306031..306036,
306040..306045,306052..306057,306061..306066,
306109..306111,306115..306120,306127..306132,
306136..306141,306148..306153))
/gene="creC"
/locus_tag="CNE_1c03060"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature complement(305824..305991)
/gene="creC"
/locus_tag="CNE_1c03060"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(305836..305838,305848..305850,
305857..305859,305869..305871,305878..305880,
305890..305892,305938..305940,305947..305949,
305959..305961,305968..305970,305980..305982))
/gene="creC"
/locus_tag="CNE_1c03060"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(305974..305976)
/gene="creC"
/locus_tag="CNE_1c03060"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(305350..305658)
/gene="creC"
/locus_tag="CNE_1c03060"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(305362..305364,305368..305373,
305386..305388,305392..305394,305440..305451,
305527..305532,305536..305538,305542..305544,
305548..305550,305617..305619,305626..305628,
305638..305640))
/gene="creC"
/locus_tag="CNE_1c03060"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(305626..305628)
/gene="creC"
/locus_tag="CNE_1c03060"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(305443..305445,305449..305451,
305530..305532,305536..305538))
/gene="creC"
/locus_tag="CNE_1c03060"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(306784..307476)
/gene="creB"
/locus_tag="CNE_1c03070"
/db_xref="GeneID:10916698"
CDS complement(306784..307476)
/gene="creB"
/locus_tag="CNE_1c03070"
/codon_start=1
/transl_table=11
/product="transcriptional regulatory protein CreB"
/protein_id="YP_004684155.1"
/db_xref="GI:339324462"
/db_xref="GeneID:10916698"
/translation="MPGMEQPRILVVEDEQAIADTILYALRTDGMLAEHCTLGGAALE
RMRAGAADLVILDVGLPDLSGFEVCRTLRTFSNAPVVFLTARHEEIDRIVGLEIGADD
YVVKPFSPRELAARVRAILRRARGGSTAKGDEVAGFTHDKDGARLAYRGRWLELTRYE
YLLLAWLVAHPGRIYSRAQLMEGVWEDALDTSDRTVDTHIKTLRAKLREASPDGADRI
RTHRGMGYSLEP"
misc_feature complement(306787..307467)
/gene="creB"
/locus_tag="CNE_1c03070"
/note="DNA-binding response regulator CreB; Provisional;
Region: PRK11083"
/db_xref="CDD:182950"
misc_feature complement(307147..307449)
/gene="creB"
/locus_tag="CNE_1c03070"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(307156..307161,307168..307170,
307225..307227,307282..307284,307306..307308,
307435..307440))
/gene="creB"
/locus_tag="CNE_1c03070"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(307306..307308)
/gene="creB"
/locus_tag="CNE_1c03070"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(307282..307290,307294..307299))
/gene="creB"
/locus_tag="CNE_1c03070"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(307153..307161)
/gene="creB"
/locus_tag="CNE_1c03070"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(306793..307077)
/gene="creB"
/locus_tag="CNE_1c03070"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature complement(order(306802..306804,306817..306819,
306856..306861,306883..306885,306892..306894,
306946..306951,307006..307008))
/gene="creB"
/locus_tag="CNE_1c03070"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene complement(307486..308613)
/locus_tag="CNE_1c03080"
/db_xref="GeneID:10916699"
CDS complement(307486..308613)
/locus_tag="CNE_1c03080"
/codon_start=1
/transl_table=11
/product="flavoprotein"
/protein_id="YP_004684156.1"
/db_xref="GI:339324463"
/db_xref="GeneID:10916699"
/translation="MPSFDYDIVIAGASFAGAACALAAARAGLRVLVLERKTDPGDKL
HTTGILVKEAIEQTWLGRAPADCVHRVEQVRLYSPKLRSIDLSAPGYYFHTTDTPRLM
RWLAAELVCHRVELRLGQAFVGAVPRHGGWHVTGVGNTRYLVGADGAKSRVAQCAGLG
RVHSFLYGVEYEFPGLALPEPGALHCFITRRFAPGYIGWIAQNPTGVQAGLALRYLPR
HGRAPDLDGLLAHVRERAGLPQLAQPAATRAGLIPCGGPVFPLARDGVILTGDAAGIV
SPVTAGGIHYAFAHGESVGQAVAAHLLRGGPAPEAVATASAPRFRAKRALRWMFDRFQ
CDWPFDLMMYSPPLRWAAEQIYFHKRQGDEPAPPARTAASA"
misc_feature complement(307753..308598)
/locus_tag="CNE_1c03080"
/note="geranylgeranyl reductase family; Region: GG-red-SF;
TIGR02032"
/db_xref="CDD:200151"
gene complement(308852..310189)
/gene="dctD"
/locus_tag="CNE_1c03090"
/db_xref="GeneID:10916700"
CDS complement(308852..310189)
/gene="dctD"
/locus_tag="CNE_1c03090"
/codon_start=1
/transl_table=11
/product="C4-dicarboxylate transport transcriptional
regulator"
/protein_id="YP_004684157.1"
/db_xref="GI:339324464"
/db_xref="GeneID:10916700"
/translation="MSIAMQDGLRVLFVEDEPLVRQATAQSLELAGFAVLALPSAEAA
IPHLHGAFAGVVVTDVRLPGASGLDLLQHCRNAAPGVPVILVTGHGDITMAVQAMREG
AYDFIEKPFGADRLTDTVRRALERRALELENQALRRELAGPAAGTRIIGRSPAIGQVR
ALVANVAPTDVPVMINGETGTGKELVARSLHALSGRAEGPFIALNCGAVPEAIFESEM
FGHEAGAFTGAGKRRIGKLEHASGGTLFLDEIESMPLALQVKLLRVLQEGSLERLGSN
ASVKIDVRIVAAAKGDMDALVAQGSFREDLYYRLNVVTIALPPLRERREDIVPLFEHF
SLVSAVRYQRPAPILSEAQRQALAQRPWPGNVRELRNAADRMVLGVPEGGQAGAQAAG
PDEAAPLRERMEHFERAVIADALARTGGAVSQAADLLQVGKATLYDKIKRYGL"
misc_feature complement(308855..310177)
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms]; Region: AtoC; COG2204"
/db_xref="CDD:32386"
misc_feature complement(309830..310156)
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(309860..309865,309872..309874,
309929..309931,309989..309991,310013..310015,
310142..310147))
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(310013..310015)
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(309989..309997,310001..310006))
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(309857..309865)
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(309251..309742)
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(309638..309661)
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(309320..309322,309446..309448,
309635..309658))
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(309443..309460)
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(309263..309265)
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature complement(308861..308986)
/gene="dctD"
/locus_tag="CNE_1c03090"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene complement(310186..312192)
/gene="dctB"
/locus_tag="CNE_1c03100"
/db_xref="GeneID:10916701"
CDS complement(310186..312192)
/gene="dctB"
/locus_tag="CNE_1c03100"
/EC_number="2.7.13.3"
/codon_start=1
/transl_table=11
/product="C4-dicarboxylate transport sensor protein DctB"
/protein_id="YP_004684158.1"
/db_xref="GI:339324465"
/db_xref="GeneID:10916701"
/translation="MPHSDDFLAVHDPAAPSAAHPAHAPDSGNGRWWGFAVALAAGLL
LLCALTWLVSVQRGLATLQQSTATRADRYAATLESTLDRYEFLPALVALHPFVRGLLD
SPNDPQRVAAANQYLAEVNRRAHASATYVIAANGIALAASNHGQPGSFVGTDYRFRPY
FQAAAGGKMGRFYAIGITSEEPGYYLAQPVESGGKVIGVTVVKLNLEWFQRAGSGAEP
LMVSDDHGVIFLSSVSAWQYRTLRPLPPALQAEMENTRQYHGRAVTPLPLEPLTSPVT
RWLADTTLTDGARLVRVRDESPATRTTFAPDGAERADRYLELGRTVGPAGWTMQVMAP
LEPVLANARNATVAAALAYACICLLLVNWRQRRQRARDMQYSRRLLEAAYDQLERRVE
ARTVDLMAINEKLEDEVAERTRAESELRAAQDELVQASKLAALGQMAAGITHELNQPL
AALRTFSDNTRVLLERGQLAAAEGNLTAIADLTERMGKITSQLKLFAGKARPVRRPVA
LRAAVDHVLALLAPRLGAVTVSVTGLDALPGLAVRADELKLEQVLLNLLGNALDAIAA
AAPARGQIDLDVQAEDHAVTVVVRDNGTGIAPEALPRLFEPFFTTKETGQGLGLGLAI
SSSIVREFGGQLSVANVPGGGAQFTLVLARAPAIDPAPSVSASQ"
misc_feature complement(310225..312036)
/gene="dctB"
/locus_tag="CNE_1c03100"
/note="Signal transduction histidine kinase regulating
C4-dicarboxylate transport system [Signal transduction
mechanisms]; Region: COG4191"
/db_xref="CDD:33926"
misc_feature complement(310702..310899)
/gene="dctB"
/locus_tag="CNE_1c03100"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(310714..310716,310726..310728,
310735..310737,310747..310749,310756..310758,
310768..310770,310825..310827,310834..310836,
310846..310848,310855..310857,310867..310869,
310879..310881))
/gene="dctB"
/locus_tag="CNE_1c03100"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(310861..310863)
/gene="dctB"
/locus_tag="CNE_1c03100"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(310237..310479)
/gene="dctB"
/locus_tag="CNE_1c03100"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(310249..310251,310255..310260,
310273..310275,310279..310281,310327..310338,
310405..310410,310414..310416,310420..310422,
310426..310428))
/gene="dctB"
/locus_tag="CNE_1c03100"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(310330..310332,310336..310338,
310408..310410,310414..310416))
/gene="dctB"
/locus_tag="CNE_1c03100"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(312263..313558)
/gene="dctA1"
/locus_tag="CNE_1c03110"
/db_xref="GeneID:10916702"
CDS complement(312263..313558)
/gene="dctA1"
/locus_tag="CNE_1c03110"
/codon_start=1
/transl_table=11
/product="C4-dicarboxylate transport protein DctA"
/protein_id="YP_004684159.1"
/db_xref="GI:339324466"
/db_xref="GeneID:10916702"
/translation="MRKPFYKILYVQVLFAIFVGILLGHYWPDTGVAMKPLGDGFIKL
IKMIIGPIIFCTVVTGIAGMSDMKKVGRVGGKALLYFEVVSTFALLIGLGAAHLLKPG
VGFNIDPATLDTKAIAQYVSKAHGQSTVEFLMHIIPDTVFSAFANGDILQILLVSLFF
GAALAVLGERARIVVQLIEQVSKVFFHIVHVITKVAPIGAFGAMAFTIGKYGLGSLVP
LLKLIGTFYFTAIVFVVFVLGTVARLTGFSILRFISYIKEELLIVLGTSSSEAALPHM
MEKLEKLGCSRSVVGLVVPTGYSFNLDGTNIYMTMAVIFIAQATGIELTLMQQLTILT
VAMITSKGASGVTGSGFITLAATLAVVPTIPVAGMVLILGIDRFMSECRALTNIIGNG
VATVVVSAWERELDRKKLNSVLQHGGRDAEVLADAGQNV"
misc_feature complement(312275..313558)
/gene="dctA1"
/locus_tag="CNE_1c03110"
/note="C4-dicarboxylate transporter DctA; Reviewed;
Region: PRK01663"
/db_xref="CDD:179317"
misc_feature complement(312323..313555)
/gene="dctA1"
/locus_tag="CNE_1c03110"
/note="Na+/H+-dicarboxylate symporters [Energy production
and conversion]; Region: GltP; COG1301"
/db_xref="CDD:31492"
gene 313950..314270
/locus_tag="CNE_1c03120"
/db_xref="GeneID:10916703"
CDS 313950..314270
/locus_tag="CNE_1c03120"
/codon_start=1
/transl_table=11
/product="ferredoxin"
/protein_id="YP_004684160.1"
/db_xref="GI:339324467"
/db_xref="GeneID:10916703"
/translation="MSSYYQHHVFFCLNQREAGENCCANHNAQAMQEYAKKRCKELGI
AGGEGRVRINKAGCLNRCELGPVLVVYPEAIWYTFVDEHDIDEIIDSHLMKGKPVERL
MVDR"
misc_feature 313968..314189
/locus_tag="CNE_1c03120"
/note="Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd)
family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like
Fds) and proteins containing domains similar to TRX-like
Fd including formate dehydrogenases, NAD-reducing
hydrogenases and the subunit E of NADH:...; Region:
TRX_Fd_family; cd02980"
/db_xref="CDD:48529"
misc_feature order(313971..313973,313977..313979,314112..314120)
/locus_tag="CNE_1c03120"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48529"
misc_feature order(313983..313985,314016..314018,314121..314123,
314133..314135)
/locus_tag="CNE_1c03120"
/note="[2Fe-2S] cluster binding site [ion binding]; other
site"
/db_xref="CDD:48529"
gene 314419..315060
/locus_tag="CNE_1c03130"
/db_xref="GeneID:10916704"
CDS 314419..315060
/locus_tag="CNE_1c03130"
/codon_start=1
/transl_table=11
/product="hydrolase alpha/beta superfamily protein"
/protein_id="YP_004684161.1"
/db_xref="GI:339324468"
/db_xref="GeneID:10916704"
/translation="MNAHTQVLSIAGPAGAIDLSVDLPQGEPRGLALVAHPHPLFGGT
KDNKVAQTLARSFVQLGYATVRPNFRGVGGSAGEHDNGIAEQDDLLAVVAWMRQQTAW
SAQAATLPLAMGGFSFGSFVTTHVARRLAEAGTPAQRLVLVGTAASRWQVAEVPADTI
VIHGEQDDTVPLASVFDWARPQELPVIVIPGADHFFHRKLHLIKQLVVNAWDR"
misc_feature 314422..315051
/locus_tag="CNE_1c03130"
/note="Predicted hydrolase of the alpha/beta superfamily
[General function prediction only]; Region: COG2945"
/db_xref="CDD:32768"
misc_feature 314587..315006
/locus_tag="CNE_1c03130"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 315123..316322
/gene="dacC"
/locus_tag="CNE_1c03140"
/db_xref="GeneID:10916705"
CDS 315123..316322
/gene="dacC"
/locus_tag="CNE_1c03140"
/EC_number="3.4.16.4"
/codon_start=1
/transl_table=11
/product="D-alanyl-D-alanine carboxypeptidase"
/protein_id="YP_004684162.1"
/db_xref="GI:339324469"
/db_xref="GeneID:10916705"
/translation="MLNRATTRLSSAFAPAAIAAAVVLAAAPAAVLAQGVPMPQVAAK
SWMLYDVTSGQALASQNADARIEPASLTKLMTAYLAFEALKEKRLTLDQSVVPTSLVL
KVKSDESRMFIEPNKPVTVQDLLLGLIVQSGNDAALALAEAVGGSEEGFVAMMNREAQ
RMGMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIKDFPEYYAMYSQKEFTYNKIRQP
NRNRLLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPDGSRRLISIVIGTTTEQVR
TQESLKILNYGFQFFDTLRLYDKGQVLATPDIYKGKSGTVKIGVQNETFVTVPKGTGG
RLKPVLERQELLIAPISAGQQVGMVKLMDGTNKVAEFPVVALEEVPEAGFFGRLWDTI
RLWFKRK"
misc_feature 315225..316319
/gene="dacC"
/locus_tag="CNE_1c03140"
/note="D-alanyl-D-alanine carboxypeptidase [Cell envelope
biogenesis, outer membrane]; Region: DacC; COG1686"
/db_xref="CDD:31872"
misc_feature 315279..>315713
/gene="dacC"
/locus_tag="CNE_1c03140"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl01009"
/db_xref="CDD:207282"
misc_feature 315993..316265
/gene="dacC"
/locus_tag="CNE_1c03140"
/note="Penicillin-binding protein 5, C-terminal domain;
Region: PBP5_C; smart00936"
/db_xref="CDD:198004"
gene 316384..316692
/locus_tag="CNE_1c03150"
/db_xref="GeneID:10916706"
CDS 316384..316692
/locus_tag="CNE_1c03150"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684163.1"
/db_xref="GI:339324470"
/db_xref="GeneID:10916706"
/translation="MTTDNQGSGNKPGDIPPEQSLIEYPSHFPIKVMGAMQDGFAEAI
VELVQGFDPDFHAGKMEMRPSSGGNYLGLTVTVWVTSREQLDDLYRALTSHPMVKVVL
"
misc_feature 316417..316689
/locus_tag="CNE_1c03150"
/note="hypothetical protein; Provisional; Region:
PRK02047"
/db_xref="CDD:179360"
gene 316901..318097
/gene="asmT"
/locus_tag="CNE_1c03160"
/db_xref="GeneID:10916707"
CDS 316901..318097
/gene="asmT"
/locus_tag="CNE_1c03160"
/EC_number="2.1.1.4"
/codon_start=1
/transl_table=11
/product="acetylserotonin O-methyltransferase AsmT"
/protein_id="YP_004684164.1"
/db_xref="GI:339324471"
/db_xref="GeneID:10916707"
/translation="MNTITLKPGKEKSLLRRHPWIYATGIATTEGRCEPGATVIVRAA
DGRFLAKAAYSPESQIRARAWTFDENEPVDHALFKRRVAAAIAYRRQWVKDSDAVRLI
FGESDRLPGLIVDYYGNGEKGQLVCQFNSAGVEHWKTAIVQALVKETGCPNVYERSDA
AVRQREGLELVTGVLAGAEPDPALSVTEHGVRYYVDVRNGHKTGFYVDQRDNRKLVGD
LAVGREVLNCFCYTGGFSLAALRGGATSVTSIDSSGEALKIAAGNVTLNGFEPERATW
LDADVFKTLREFRAEGRQFDLIVLDPPKFAPSAQHIDRAARAYKEINLVGMQLLRPGG
LLFTYSCSGAISMELFQKIVAGAVTDARADARILRRLSAGTDHPMLAAFPEGEYLKGL
LLEKVA"
misc_feature 316904..317098
/gene="asmT"
/locus_tag="CNE_1c03160"
/note="Putative RNA-binding Domain in PseudoUridine
synthase and Archaeosine transglycosylase; Region: PUA;
smart00359"
/db_xref="CDD:197680"
misc_feature 316916..318052
/gene="asmT"
/locus_tag="CNE_1c03160"
/note="23S rRNA m(5)C1962 methyltransferase; Provisional;
Region: PRK15128"
/db_xref="CDD:185082"
misc_feature 317126..317431
/gene="asmT"
/locus_tag="CNE_1c03160"
/note="Middle domain of the SAM-dependent
methyltransferase RlmI and related proteins; Region:
RlmI_M_like; cd11572"
/db_xref="CDD:211413"
misc_feature order(317198..317200,317282..317284)
/gene="asmT"
/locus_tag="CNE_1c03160"
/note="putative RNA binding site [nucleotide binding];
other site"
/db_xref="CDD:211413"
misc_feature 317573..317914
/gene="asmT"
/locus_tag="CNE_1c03160"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(317582..317602,317651..317656,317735..317743,
317801..317803)
/gene="asmT"
/locus_tag="CNE_1c03160"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 318416..318835
/locus_tag="CNE_1c03170"
/db_xref="GeneID:10916708"
CDS 318416..318835
/locus_tag="CNE_1c03170"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684165.1"
/db_xref="GI:339324472"
/db_xref="GeneID:10916708"
/translation="MVPAKLRYYAGLALTEYGRAAEPRPGRLSLVLREPMGVAGIIAP
WNSPVVLMVRSLAPALAAGCTAVIKMPGQTALTNALVARIMARALEAGTVWINNWASV
YDEFEEGGYKQSGQGRLNGVAAIDDFVEYKHIALAPG"
misc_feature 318416..>318697
/locus_tag="CNE_1c03170"
/note="NAD(P)+-dependent aldehyde dehydrogenase
superfamily; Region: ALDH-SF; cl11961"
/db_xref="CDD:213126"
misc_feature <318668..318823
/locus_tag="CNE_1c03170"
/note="NAD(P)+-dependent aldehyde dehydrogenase
superfamily; Region: ALDH-SF; cl11961"
/db_xref="CDD:213126"
gene complement(318845..321013)
/gene="pcrA"
/locus_tag="CNE_1c03180"
/db_xref="GeneID:10916709"
CDS complement(318845..321013)
/gene="pcrA"
/locus_tag="CNE_1c03180"
/EC_number="3.6.4.12"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase PcrA"
/protein_id="YP_004684166.1"
/db_xref="GI:339324473"
/db_xref="GeneID:10916709"
/translation="MRDIPVWIYSWRQPFLSLPRAPPVTLDLAPAADLAAPDADDVPA
YLSRLNPEQRAAVEHGSDAPLLIIAGAGSGKTNTLAHRVAHLVLAGADPRRILLLTFS
RRAAAEMGRRVERIVDQALGTQTGAGRAALQWSGTFHAIGARLLREYAETLGLSPAFT
ISDRGDAADLMHVVRHDLGLSETASRFPKKETCLSIYSRVVNTQALLEDVLRQQFPRY
AMWADALRTLFAGYVEAKQKQHVLDYDDLLLYWAQAMAEPTIAQDMGARFDHVLVDEY
QDTNALQASILLAMRPDGRGLTVVGDDAQSIYAFRGATVRNILDFPAQFTPAAQQVTL
SQNYRSTQPILQAANAVIGLAAERYTKDLWSERASAEKPGVIVVNDEADQARYVVEQV
LARREAGLTLMAQAVLFRAADHSAQVEIELARRNIPFVKFGGLKFLESTHVKDVLAVV
RWLENPRDRMAGFRTLQLLPGIGPKTAARVLDAMALATEPLFSLEEFEPPPAAAPAWA
DLLALARALMAPTSPWPSEFEQVLAWYAPHLERLHDDAAARQADLQQLERIAATYGAR
ERFLTELTLDPPSASSDESGVPSRDEDYLILSTIHSAKGQEWKAVYVLNAVDGCMPSD
LATGTTEEIEEERRLLYVAMTRAKDHLDIVVPQRFYVHQQVGFGDRHVYASRTRFLPN
RVMPNFHSRAWPPPPMPGEAPARPALAPVDLASRMRNMWR"
misc_feature complement(318968..320875)
/gene="pcrA"
/locus_tag="CNE_1c03180"
/note="Superfamily I DNA and RNA helicases [DNA
replication, recombination, and repair]; Region: UvrD;
COG0210"
/db_xref="CDD:30559"
misc_feature complement(320645..320854)
/gene="pcrA"
/locus_tag="CNE_1c03180"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature complement(319052..>319222)
/gene="pcrA"
/locus_tag="CNE_1c03180"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene complement(321095..321631)
/gene="bcp"
/locus_tag="CNE_1c03190"
/db_xref="GeneID:10916710"
CDS complement(321095..321631)
/gene="bcp"
/locus_tag="CNE_1c03190"
/EC_number="1.11.1.-"
/codon_start=1
/transl_table=11
/product="peroxiredoxin"
/protein_id="YP_004684167.1"
/db_xref="GI:339324474"
/db_xref="GeneID:10916710"
/translation="MTTAAPAIKTSRKPWPIVVAVVVLALLGWFGYRALSPANTAPAA
TFTLLSGEKVSTADLKGKVYMINFWATSCATCVKEMPDMVRTYEQFKGKGLEFVAVAM
NYDPPMYVMNYAKTRGLPFKVAMDSDGAAAKAFGNVQLTPTTFVVDKDGRILKRYVGE
PEWDALHKLLDGALAKSA"
misc_feature complement(321155..321499)
/gene="bcp"
/locus_tag="CNE_1c03190"
/note="TlpA-like family; composed of TlpA, ResA, DsbE and
similar proteins. TlpA, ResA and DsbE are bacterial
protein disulfide reductases with important roles in
cytochrome maturation. They are membrane-anchored proteins
with a soluble TRX domain containing a...; Region:
TlpA_like_family; cd02966"
/db_xref="CDD:48515"
misc_feature complement(order(321404..321406,321413..321415))
/gene="bcp"
/locus_tag="CNE_1c03190"
/note="catalytic residues [active]"
/db_xref="CDD:48515"
gene complement(321744..322250)
/locus_tag="CNE_1c03200"
/db_xref="GeneID:10916711"
CDS complement(321744..322250)
/locus_tag="CNE_1c03200"
/codon_start=1
/transl_table=11
/product="thioredoxin-like protein"
/protein_id="YP_004684168.1"
/db_xref="GI:339324475"
/db_xref="GeneID:10916711"
/translation="MPAARIARHVFATTSLRWVAASALLAAATSMPAAASPAHLPPAT
DLAAHGTEAARRGEPLVVLVSMPGCSYCDAVRRNYLGPQAAAGEIAVRELDMTSDTPL
RDADGSLTTARAWARAHQVQVAPTVLFLDRQGRAAAGPLRGMQPDFYGAYLEQALDQA
RAAIATRR"
misc_feature complement(321762..322118)
/locus_tag="CNE_1c03200"
/note="SoxW family; SoxW is a bacterial periplasmic TRX,
containing a redox active CXXC motif, encoded by a genetic
locus (sox operon) involved in thiosulfate oxidation.
Sulfur bacteria oxidize sulfur compounds to provide
reducing equivalents for carbon dioxide...; Region: SoxW;
cd02951"
/db_xref="CDD:48500"
misc_feature complement(order(322035..322037,322044..322046))
/locus_tag="CNE_1c03200"
/note="catalytic residues [active]"
/db_xref="CDD:48500"
gene 322342..322998
/locus_tag="CNE_1c03210"
/db_xref="GeneID:10916712"
CDS 322342..322998
/locus_tag="CNE_1c03210"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684169.1"
/db_xref="GI:339324476"
/db_xref="GeneID:10916712"
/translation="MAPASAARSLCAPSPHGFPMRLVPPPPSFPAAVRRPLLCCAAVL
AFALCACSPRYDWRTIQSGEGAYAALYPGKPTSAARDVTIAGRKLPMTMEAARVDDTL
FAVGVVTLPADDEALRREALAAMQAGLLANLGTPSGEPRARPVTMMSADRPGRPLAGV
EVQASGVSPQDQSPRRLTARLVAVGTRAYQAVVLESGDAARARQAEQVEQFLGGFHPF
"
gene 323082..323729
/gene="rhtB"
/locus_tag="CNE_1c03220"
/db_xref="GeneID:10916713"
CDS 323082..323729
/gene="rhtB"
/locus_tag="CNE_1c03220"
/codon_start=1
/transl_table=11
/product="homoserine/homoserine lactone efflux protein
RhtB"
/protein_id="YP_004684170.1"
/db_xref="GI:339324477"
/db_xref="GeneID:10916713"
/translation="MRWEVWLAYFAACWVIAVSPGSGAVLSMSHGLSYGLRRTTTTIF
GLQAGLVIVLLVAGGGLGALLLASEQAFMVVKTIGALYLIYLGVQQWRAKMESGADQG
GGAAPVRVAVMSRRRRFATGLLTNVTNPKGIIFMVAVLPQFIDPNRPLALQLAILAAT
MCCVDLVVMHGYALLASRMQGLFRNARAVRWQNRFFGSVLMAVGAALFFVRRQHA"
misc_feature 323082..323717
/gene="rhtB"
/locus_tag="CNE_1c03220"
/note="LysE type translocator; Region: LysE; cl00565"
/db_xref="CDD:207111"
gene 323808..323996
/locus_tag="CNE_1c03230"
/db_xref="GeneID:10916714"
CDS 323808..323996
/locus_tag="CNE_1c03230"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684171.1"
/db_xref="GI:339324478"
/db_xref="GeneID:10916714"
/translation="MPALPNPRAVARLQPRHTVPPVEEPGPPGIPPDLPLPPEEDPTP
PPVEPPVAGHAGRYGVSS"
gene complement(324388..324391)
/locus_tag="CNE_1c03240"
/note="transcriptional regulator GntR family"
/pseudo
/db_xref="GeneID:10916715"
gene 324749..324868
/locus_tag="CNE_1c03250"
/db_xref="GeneID:10916716"
CDS 324749..324868
/locus_tag="CNE_1c03250"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684172.1"
/db_xref="GI:339324479"
/db_xref="GeneID:10916716"
/translation="MIMKRIALTALLAASAGGACAQSAGTGITLYGRAVAGLD"
gene 324899..325861
/gene="nagC"
/locus_tag="CNE_1c03260"
/db_xref="GeneID:10916717"
CDS 324899..325861
/gene="nagC"
/locus_tag="CNE_1c03260"
/note="porin"
/codon_start=1
/transl_table=11
/product="outer membrane protein"
/protein_id="YP_004684173.1"
/db_xref="GI:339324480"
/db_xref="GeneID:10916717"
/translation="MGTFRFGSNQYGVSFWGMRGAEDLGGGLRRVFNLEGMITSGTGR
YDPLFNRRAQVGLASNDWGTQLLGRAMSLTDDESGAIDPMGLQASSVATLVYGRNWGS
RLNAATYNSPVWGGLSVRAQAGSDGMAGSFNSGKQLSAAIKYAQGNLNLTGIYEELRD
AQSRMDNLYASSRQYTLGGSYALNNLRLFAGYNLTVSSGDTVATPENSYAATRSQMAW
VGANYRLLPALTRLSGVYYATLNKSGGHGTLVTLGAKYDLSKRTSPYGTVASVFNSRM
PPSRWRRRRTPCRAPGRTSRAMPASSTGSDGGWPVIEMYWRALP"
misc_feature 324902..325720
/gene="nagC"
/locus_tag="CNE_1c03260"
/note="Porins form aqueous channels for the diffusion of
small hydrophillic molecules across the outer membrane.
Individual 16-strand anti-parallel beta-barrels form a
central pore, and trimerizes thru mainly hydrophobic
interactions at the interface. Trimers...; Region:
gram_neg_porins; cd00342"
/db_xref="CDD:30071"
misc_feature order(324941..324943,325049..325051,325142..325144,
325208..325210)
/gene="nagC"
/locus_tag="CNE_1c03260"
/note="eyelet of channel; other site"
/db_xref="CDD:30071"
misc_feature order(324956..324970,324986..324988,324992..325000,
325004..325006,325010..325021,325046..325051,
325055..325069,325097..325105,325208..325210,
325211..325213,325670..325675,325682..325684)
/gene="nagC"
/locus_tag="CNE_1c03260"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:30071"
gene 325858..326961
/gene="nagA"
/locus_tag="CNE_1c03270"
/db_xref="GeneID:10916718"
CDS 325858..326961
/gene="nagA"
/locus_tag="CNE_1c03270"
/EC_number="3.5.1.25"
/codon_start=1
/transl_table=11
/product="N-acetylglucosamine-6-phosphate deacetylase
NagA"
/protein_id="YP_004684174.1"
/db_xref="GI:339324481"
/db_xref="GeneID:10916718"
/translation="MKGNILTPAGWIFGEIHAGPDGRIARIEGVPASPEHNDAPYVLP
GFVDLLNHGGGGKDFMDGEAAVPVILRAHVRFGTSSLLGSTMTSPHDVLLPALQALGR
ACAQRPPGAARMLGVHLEGPYINPGKLGAQPDTSATATPEELEQYLGAAPLKVVTLAP
ELPGHLDIIRLLAARGVRVQLGHTLGTYEDAVAALDAGASGFTHLFNAMTPLQHRAPG
VVAAALAHAEFAELIPDLLHVHPGAIRAALRAIPRLYAVTDATAAAGMPDGVYHLGSQ
TVYKAHGSVRLADGTLAGSVLTMDQALRNFVSIGLDLADASRRVSLYPAQYLGMSDRG
MLAQRCWADVVVLDRALSVRTVYVEGECCVENA"
misc_feature 325858..326940
/gene="nagA"
/locus_tag="CNE_1c03270"
/note="N-acetylglucosamine-6-phosphate deacetylase
[Carbohydrate transport and metabolism]; Region: NagA;
COG1820"
/db_xref="CDD:32005"
misc_feature 325864..326937
/gene="nagA"
/locus_tag="CNE_1c03270"
/note="N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to...; Region:
NagA; cd00854"
/db_xref="CDD:30034"
misc_feature order(326005..326007,326011..326013,326215..326217,
326248..326250,326404..326406,326467..326469,
326476..326481,326569..326571,326632..326634,
326731..326733)
/gene="nagA"
/locus_tag="CNE_1c03270"
/note="active site"
/db_xref="CDD:30034"
misc_feature order(326473..326475,326491..326493,326497..326502,
326506..326508,326524..326529,326566..326577,
326581..326583,326584..326589,326596..326598)
/gene="nagA"
/locus_tag="CNE_1c03270"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:30034"
gene 326954..327985
/gene="nagB"
/locus_tag="CNE_1c03280"
/db_xref="GeneID:10916719"
CDS 326954..327985
/gene="nagB"
/locus_tag="CNE_1c03280"
/EC_number="3.5.99.6"
/codon_start=1
/transl_table=11
/product="glucosamine-6-phosphate deaminase"
/protein_id="YP_004684175.1"
/db_xref="GI:339324482"
/db_xref="GeneID:10916719"
/translation="MLEEALSAPAVVAAQLAQAPRVAALAAQLAAQAWPAALTVARGS
SDHAASYFATLVTRRLGVPVASLPMSTVTLHDSALRVAGQLAVAFSQSGRSPDLVETM
QALRDGGAATVALVNAPDSPLAQACAYELPLLAGPEQSVAATKSYIAMLSMSALLVGH
LEAARSGERELVDACAGLPAALEQAAAQDWSALVPALRDVERMIVLGRGAGLAIAQEA
ALKLKETSGIQAEAFSGAEVRHGPMEIIGDGYPLLVFAPRGPEQAGLLALAAEMRKRG
ARVLLAAPPGTVDAELPPELPLVPAGHPLLDPICAIQSFYVAAQALALARGRNPDQPQ
YLRKVTETR"
misc_feature 327077..327979
/gene="nagB"
/locus_tag="CNE_1c03280"
/note="Predicted phosphosugar isomerases [Cell envelope
biogenesis, outer membrane]; Region: AgaS; COG2222"
/db_xref="CDD:32404"
misc_feature 327077..327436
/gene="nagB"
/locus_tag="CNE_1c03280"
/note="SIS (Sugar ISomerase) domain repeat 1 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_1; cd05008"
/db_xref="CDD:88405"
misc_feature order(327077..327082,327110..327115,327122..327127,
327146..327148,327152..327154,327167..327169,
327176..327178,327242..327244)
/gene="nagB"
/locus_tag="CNE_1c03280"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88405"
misc_feature order(327083..327088,327221..327229)
/gene="nagB"
/locus_tag="CNE_1c03280"
/note="active site"
/db_xref="CDD:88405"
misc_feature 327542..327976
/gene="nagB"
/locus_tag="CNE_1c03280"
/note="SIS (Sugar ISomerase) domain repeat 2 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_2; cd05009"
/db_xref="CDD:88406"
misc_feature order(327578..327580,327620..327622,327632..327634,
327638..327640,327644..327646,327650..327652,
327662..327664,327668..327676,327680..327691,
327740..327745,327755..327757,327761..327766,
327953..327958,327971..327973)
/gene="nagB"
/locus_tag="CNE_1c03280"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88406"
misc_feature order(327614..327616,327623..327625)
/gene="nagB"
/locus_tag="CNE_1c03280"
/note="active site"
/db_xref="CDD:88406"
gene 328044..329531
/gene="zwf"
/locus_tag="CNE_1c03290"
/db_xref="GeneID:10916720"
CDS 328044..329531
/gene="zwf"
/locus_tag="CNE_1c03290"
/EC_number="1.1.1.49"
/codon_start=1
/transl_table=11
/product="glucose-6-phosphate 1-dehydrogenase"
/protein_id="YP_004684176.1"
/db_xref="GI:339324483"
/db_xref="GeneID:10916720"
/translation="MQTTRTASSSGTADARPLDLVIFGGAGDLSARKLLPSLYMCHRD
GNLPDGTRIIGVGRHRWDREAFVNFADESAQPFVEARYLEPAKWQTFLQRLDFVHVDA
SQSGDYPALAAQLRQDALRIYYMAMPPGLFAATCDNLASHGLIANDTRLVLEKPLGVD
LASAIGIGEVVSRYFSEDRTYRIDHYLGKETVQNLMALRFGNSIFEPLWRTPFVRSVQ
ITVAETVGVGTRGGFYDEAGAMRDMVQNHLLQLVSILAMEPPASLTSDAVRDEKLKVL
RSLRPMSPEDVRRNTVRGQYTAGAIAGELVRGYLQEEGIPPDSRTETFVAMRAELGTW
RWNKVPFYLRTGKRMQERVTEVVINFAEVPHSIFDAGSTLQPNRMVIRLQPEESVRLT
LMVKQPGEGMKLKPLSLALNLDSAFTTRRAEAYERLLLDVIRGRLALFVRRDELQAAW
TWVDPILEAWRQQDEGPRPYTAGTWGPAASSAFMAREGVQWSEEA"
misc_feature 328092..329525
/gene="zwf"
/locus_tag="CNE_1c03290"
/note="glucose-6-phosphate 1-dehydrogenase; Validated;
Region: PRK05722"
/db_xref="CDD:180222"
misc_feature 328104..328625
/gene="zwf"
/locus_tag="CNE_1c03290"
/note="Glucose-6-phosphate dehydrogenase, NAD binding
domain; Region: G6PD_N; pfam00479"
/db_xref="CDD:201252"
misc_feature 328629..329522
/gene="zwf"
/locus_tag="CNE_1c03290"
/note="Glucose-6-phosphate dehydrogenase, C-terminal
domain; Region: G6PD_C; pfam02781"
/db_xref="CDD:202392"
gene 329531..329845
/locus_tag="CNE_1c03300"
/db_xref="GeneID:10916721"
CDS 329531..329845
/locus_tag="CNE_1c03300"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684177.1"
/db_xref="GI:339324484"
/db_xref="GeneID:10916721"
/translation="MRLTERPAWRALAALAVQPLPHLRELVLEPGRGDYARLSAAGIE
LDFTRQRINGTVHEALLAPAQDAGIEAQRDAMLAGEPVNATEGRAVLHVALRGGADAH
PP"
misc_feature 329531..>329833
/locus_tag="CNE_1c03300"
/note="glucose-6-phosphate isomerase; Reviewed; Region:
pgi; PRK00179"
/db_xref="CDD:178917"
gene 329909..330838
/gene="pgi1"
/locus_tag="CNE_1c03310"
/db_xref="GeneID:10916722"
CDS 329909..330838
/gene="pgi1"
/locus_tag="CNE_1c03310"
/EC_number="5.3.1.9"
/codon_start=1
/transl_table=11
/product="glucose-6-phosphate isomerase"
/protein_id="YP_004684178.1"
/db_xref="GI:339324485"
/db_xref="GeneID:10916722"
/translation="MRDGHVRGFGGAPVRHVVSLGIGGSDLGPRMACEALAAHASDAV
QLHFVSNPDPAQLCAVLRQADAATTLFLVSSKTFTTHDTLINAASARQWLLDHGCPAQ
QVPAQFAAITANAACAVAEGYLPQQVFRFWGWVRGRYSLWSAIGLPVMIAAGPRQFRA
LLDGAHAMDTHFRSAPLAQNLPVAMALCGIWNRNFLGAPTQLVAPYAAPLARQPAYLQ
QQDMESCGKRVDAAGRVVEHDTGFIVWGGLRLDGSTPTSSCCTRARTWCAGRPDRHAP
LRGAAAAGAEASPAGAGQSAGAGQRAVLRTQPR"
misc_feature 329939..330364
/gene="pgi1"
/locus_tag="CNE_1c03310"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the first SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_1; cd05015"
/db_xref="CDD:88410"
misc_feature order(329972..329974,329978..329983,330131..330139,
330146..330148,330317..330319)
/gene="pgi1"
/locus_tag="CNE_1c03310"
/note="active site"
/db_xref="CDD:88410"
misc_feature order(330056..330067,330152..330154,330164..330166,
330173..330175)
/gene="pgi1"
/locus_tag="CNE_1c03310"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88410"
misc_feature 330503..>330652
/gene="pgi1"
/locus_tag="CNE_1c03310"
/note="SIS domain. SIS (Sugar ISomerase) domains are found
in many phosphosugar isomerases and phosphosugar binding
proteins. SIS domains are also found in proteins that
regulate the expression of genes involved in synthesis of
phosphosugars; Region: SIS; cl00389"
/db_xref="CDD:207026"
gene 330780..331163
/gene="pgi2"
/locus_tag="CNE_1c03320"
/db_xref="GeneID:10916723"
CDS 330780..331163
/gene="pgi2"
/locus_tag="CNE_1c03320"
/EC_number="5.3.1.9"
/codon_start=1
/transl_table=11
/product="glucose-6-phosphate isomerase"
/protein_id="YP_004684179.1"
/db_xref="GI:339324486"
/db_xref="GeneID:10916723"
/translation="MLANLLAQASALSCGRNHDETLAALSASGLPPQEAARLAPHRTF
TGNVPVSLLWLDMLDAASLGALIALYEHKVFVQAAIWGIHAYDQWGVELGKAIASAMQ
ACLARREVPKEMDPAGAATLASLVG"
misc_feature <330909..331079
/gene="pgi2"
/locus_tag="CNE_1c03320"
/note="Phosphoglucose isomerase (PGI) contains two SIS
(Sugar ISomerase) domains. This classification is based on
the alignment of the second SIS domain. PGI is a
multifunctional enzyme which as an intracellular dimer
catalyzes the reversible isomerization of...; Region:
SIS_PGI_2; cd05016"
/db_xref="CDD:88411"
gene complement(331174..332379)
/gene="comM"
/locus_tag="CNE_1c03330"
/db_xref="GeneID:10916724"
CDS complement(331174..332379)
/gene="comM"
/locus_tag="CNE_1c03330"
/codon_start=1
/transl_table=11
/product="competence protein ComM"
/protein_id="YP_004684180.1"
/db_xref="GI:339324487"
/db_xref="GeneID:10916724"
/translation="MSLAVLRSRALTGIAAPPVRVETHLANGLPAFTIVGLADTGVSE
SRERVRAAILNSGYEFPNHRITVNLAPADLPKESGRFDLASRGPDMRDVRGQAQARRA
IEVAGAGQHSALLVGPPGTGKSMLAQRLPGLLPPMTLQEALESAAVMSLTPGGFRTAL
WGQRPCRSPHHTASGPAMGGGGGNPRPGEISLAHHGVLFLDELPEFDRRVPEVLREPL
ESGRITVTRAAGHADFPACFQFVAAMNPCPCGYLGHPDRPCRCTPDQVRRYQSRISGP
MLDRIDLQVEVPAQDQGEMLDGPPGEPSAVVRTRVLAARECQLARQGKPNNELGGREI
ELHCTMEPQAQALLRGAMTRLAWSARSYYRVLKVARTIADLEGAEVLTAAHVGEAIQY
RRALRMAGG"
misc_feature complement(<332128..332319)
/gene="comM"
/locus_tag="CNE_1c03330"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
pfam13541"
/db_xref="CDD:205719"
misc_feature complement(331186..>332157)
/gene="comM"
/locus_tag="CNE_1c03330"
/note="Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0606"
/db_xref="CDD:30951"
misc_feature complement(<331732..332097)
/gene="comM"
/locus_tag="CNE_1c03330"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(332008..332031)
/gene="comM"
/locus_tag="CNE_1c03330"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(331777..331779,332005..332028))
/gene="comM"
/locus_tag="CNE_1c03330"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(331774..331791)
/gene="comM"
/locus_tag="CNE_1c03330"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(331201..331482)
/gene="comM"
/locus_tag="CNE_1c03330"
/note="Magnesium chelatase, subunit ChlI; Region:
Mg_chelatase_2; pfam13335"
/db_xref="CDD:205515"
gene complement(332461..332739)
/locus_tag="CNE_1c03340"
/db_xref="GeneID:10916725"
CDS complement(332461..332739)
/locus_tag="CNE_1c03340"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684181.1"
/db_xref="GI:339324488"
/db_xref="GeneID:10916725"
/translation="MKPTDLFNDLQNKVSEALRNSPARDIEKNVRSMMTQGFARLDLV
TREEFDVQSQVLARTRARLEELEGRVAELERRAGIPPGAGAVDSTGGA"
misc_feature complement(332512..332736)
/locus_tag="CNE_1c03340"
/note="Membrane fusogenic activity; Region: BMFP;
pfam04380"
/db_xref="CDD:190961"
gene 333141..333938
/locus_tag="CNE_1c03350"
/db_xref="GeneID:10916726"
CDS 333141..333938
/locus_tag="CNE_1c03350"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684182.1"
/db_xref="GI:339324489"
/db_xref="GeneID:10916726"
/translation="MKKLALAVSAVVLTSAAATAYAQSTDAAAPAPAAAAAEPASPHT
FTANVSLVSDYRYRGISQTNLRPAIQGGFDYAHESGFYVGNWNSSISWLEDANPAVSA
PVEMDFYGGFKNTFKVAGTEFNYDVGVLQYYYPGGYNNPRPYTTELYAGIGWGPVFLK
YSHAVTNLFGWADSKNSGYIDLSANVPLNFWDLTLNAHVGYQDVKHNSDASYTDWKIG
LTKDLGKGFALAVAYVDTNAKQAAYTSANRGRYLGKAAAWASITKTF"
misc_feature 333261..333935
/locus_tag="CNE_1c03350"
/note="Bacterial protein of unknown function (Gcw_chp);
Region: Gcw_chp; pfam09694"
/db_xref="CDD:118226"
gene 333988..334326
/gene="glnK"
/locus_tag="CNE_1c03360"
/db_xref="GeneID:10916727"
CDS 333988..334326
/gene="glnK"
/locus_tag="CNE_1c03360"
/codon_start=1
/transl_table=11
/product="nitrogen regulatory protein GlnK"
/protein_id="YP_004684183.1"
/db_xref="GI:339324490"
/db_xref="GeneID:10916727"
/translation="MKLIIAVIKPFKLDEVREALSDVGVSGITVTEVKGFGRQKGHTE
LYRGAEYIVDFLPKVKIEVAVPDDVVERAIEAVEKSARTGKIGDGKIFVAPIEQVIRI
RTGETGGDAL"
misc_feature 333997..334302
/gene="glnK"
/locus_tag="CNE_1c03360"
/note="Nitrogen regulatory protein P-II; Region: P-II;
pfam00543"
/db_xref="CDD:201295"
misc_feature 333997..334302
/gene="glnK"
/locus_tag="CNE_1c03360"
/note="Nitrogen regulatory protein P-II; Region: P-II;
smart00938"
/db_xref="CDD:198006"
gene 334664..335926
/gene="amtB"
/locus_tag="CNE_1c03370"
/db_xref="GeneID:10916728"
CDS 334664..335926
/gene="amtB"
/locus_tag="CNE_1c03370"
/codon_start=1
/transl_table=11
/product="ammonia channel"
/protein_id="YP_004684184.1"
/db_xref="GI:339324491"
/db_xref="GeneID:10916728"
/translation="MILMTLPGLALFYGGLVRSKNMLSVLMQCLVIFSLVALLWAIYG
YSFAFTEGNAFFGGTDRLFMKGLTVEAVAATFSKGVVVPELGYFAFQCAFACITCGLI
IGAFAERAKFSAVLVFVVLWFTFSYIPMAHMVWFWPGPDAYTDAAAGAAATAKSGWLF
QKGALDFAGGTVVHINAAVAGLVGAYMFGKRIGFGREAIRPHSLTFTMVGASLLWFGW
FGFNAGSALEANGSAALAFVNTLLATCAAVLAWTFGEWIGKGKPSMLGGASGAVAGLV
AITPAAGFVGPMGSIVIGLLAGLLCLWGVTGLKRMLGMDDSLDVFGVHGVGGILGALL
TGVFASPSLGGTGIYDYVTNKVADDYSIAGQLWIQFEGVLTTVVWSGVVAFVAYKLVD
MLIGLRVPEDEEREGLDITSHGETAYEV"
misc_feature 334664..335920
/gene="amtB"
/locus_tag="CNE_1c03370"
/note="ammonium transporter; Provisional; Region:
PRK10666"
/db_xref="CDD:182630"
gene 336476..337771
/gene="gshA"
/locus_tag="CNE_1c03380"
/db_xref="GeneID:10916729"
CDS 336476..337771
/gene="gshA"
/locus_tag="CNE_1c03380"
/EC_number="6.3.2.2"
/codon_start=1
/transl_table=11
/product="gamma-glutamate-cysteine ligase GshA"
/protein_id="YP_004684185.1"
/db_xref="GI:339324492"
/db_xref="GeneID:10916729"
/translation="MVPHLITALNGPLLELEKKILDATPSIERWFRLEWQEHTPPFYC
SVDLRNAGFKLAPVDTNLFPGGFNNLAPEMLPLAVQAAMAAIEKICPDAKNLLLIPER
HTRNMFYLQNVARLSLIMRQAGLNVRLGSLSEEITEPTPIELPDGQTLVVEPLARLGT
KGRRLGLKDFDPCSILLNNDLSAGIPPILENINEQYLLPPLHAGWSTRRKSSHFAAYD
EVAKKFAKLIDIDQWMVNPYFARCSGVDFHERVGEEELADAVEGVLKKIAKKYREYGI
KETPYVVVKADAGTYGMGIMTVRDPSEVKGLNRKERNKMSVVKEGLEVSDVIIQEGVH
TFEKVNEAVAEPVVYMIDRYVVGGFYRVHTGRGNDENLNAPGMHFVPLAFAPNGIPDS
HAKPGAAVPNRFYMYGVVARLALLAASLELEKTDPNPIL"
misc_feature 336524..337705
/gene="gshA"
/locus_tag="CNE_1c03380"
/note="Glutamate-cysteine ligase; Region: GshA; pfam08886"
/db_xref="CDD:149827"
misc_feature 336524..337705
/gene="gshA"
/locus_tag="CNE_1c03380"
/note="glutamate--cysteine ligase, T. ferrooxidans family;
Region: gshA_ferroox; TIGR02049"
/db_xref="CDD:162673"
gene 337780..338748
/gene="gshB"
/locus_tag="CNE_1c03390"
/db_xref="GeneID:10916730"
CDS 337780..338748
/gene="gshB"
/locus_tag="CNE_1c03390"
/EC_number="6.3.2.3"
/codon_start=1
/transl_table=11
/product="glutathione synthase GshB"
/protein_id="YP_004684186.1"
/db_xref="GI:339324493"
/db_xref="GeneID:10916730"
/translation="MRILFITDPLETFKTYKDSTYAMMTEAAARGHELYWCLQPQLAL
SGRTVEAVATRLHLTGETSDADHSAWYREGNSALEPLSAFDAVLMRKDPPFDMEYVTS
TWLLELAESQGARVFNKPRAIRDHSEKLAIAQYPEYITPTLVTRDLARIRDFHAEHRD
IIVKPLDGMGGMGVFRVGADGMNLAAIVETLGHDGARTLMVQRYIPAIKDGDKRILLI
GGVPVPYSLARVPMAGEVRGNLAAGGTGRAQELSTRDREIAEALAPGLWEQGLLLVGL
DVIGDYLTEVNVTSPTCFQEITQQTGFHVAAMFIDALEHAVDAAGR"
misc_feature 337780..338739
/gene="gshB"
/locus_tag="CNE_1c03390"
/note="glutathione synthetase; Provisional; Region:
PRK05246"
/db_xref="CDD:179971"
misc_feature 337780..338151
/gene="gshB"
/locus_tag="CNE_1c03390"
/note="Prokaryotic glutathione synthetase, N-terminal
domain; Region: GSH-S_N; pfam02951"
/db_xref="CDD:190485"
misc_feature 338161..338682
/gene="gshB"
/locus_tag="CNE_1c03390"
/note="Prokaryotic glutathione synthetase, ATP-grasp
domain; Region: GSH-S_ATP; pfam02955"
/db_xref="CDD:202486"
gene 338816..339271
/gene="fruA"
/locus_tag="CNE_1c03400"
/db_xref="GeneID:10916731"
CDS 338816..339271
/gene="fruA"
/locus_tag="CNE_1c03400"
/EC_number="2.7.1.69"
/codon_start=1
/transl_table=11
/product="phosphotransferase system, fructose-specific
component IIA"
/protein_id="YP_004684187.1"
/db_xref="GI:339324494"
/db_xref="GeneID:10916731"
/translation="MAGILIIAHTPLASALRDCAAHVYCGQPQRLEAIDVLPDADPAV
VLAEARRRLAAICEDNGALVLTDIFGATPANIAARLAEPGRVRVLAGVNLPMLVRAIC
YRGEKLDQLATKALAGGSQGVLQVGTTTVQNQTANHPDKYAAEGHHHHQ"
misc_feature 338822..339178
/gene="fruA"
/locus_tag="CNE_1c03400"
/note="PTS_IIA, PTS system, mannose/sorbose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_man; cd00006"
/db_xref="CDD:28890"
misc_feature order(338840..338842,338882..338887,338921..338923,
339029..339031,339119..339121)
/gene="fruA"
/locus_tag="CNE_1c03400"
/note="active pocket/dimerization site"
/db_xref="CDD:28890"
misc_feature order(338840..338842,339014..339016,339029..339031)
/gene="fruA"
/locus_tag="CNE_1c03400"
/note="active site"
/db_xref="CDD:28890"
misc_feature 338840..338842
/gene="fruA"
/locus_tag="CNE_1c03400"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:28890"
gene 339240..339509
/gene="ptsH"
/locus_tag="CNE_1c03410"
/db_xref="GeneID:10916732"
CDS 339240..339509
/gene="ptsH"
/locus_tag="CNE_1c03410"
/codon_start=1
/transl_table=11
/product="phosphohistidinoprotein-hexose
phosphotransferase PtsH"
/protein_id="YP_004684188.1"
/db_xref="GI:339324495"
/db_xref="GeneID:10916732"
/translation="MLQRDTTIINKLGLHARASAKLTQLAGNFVSQVKMSRNGRQVDA
KSIMGVMMLAAGIGSTVTLETDGPDEQEAMDALLALIANRFGEGE"
misc_feature 339258..339482
/gene="ptsH"
/locus_tag="CNE_1c03410"
/note="Histidine-containing phosphocarrier protein
(HPr)-like proteins. HPr is a central component of the
bacterial phosphoenolpyruvate sugar phosphotransferase
system (PTS). The PTS catalyses the phosphorylation of
sugar substrates during their translocation...; Region:
PTS-HPr_like; cd00367"
/db_xref="CDD:29444"
misc_feature 339258..339263
/gene="ptsH"
/locus_tag="CNE_1c03410"
/note="dimerization domain swap beta strand [polypeptide
binding]; other site"
/db_xref="CDD:29444"
misc_feature order(339279..339281,339285..339290,339294..339299,
339309..339311,339318..339320,339372..339383,
339390..339395)
/gene="ptsH"
/locus_tag="CNE_1c03410"
/note="regulatory protein interface [polypeptide binding];
other site"
/db_xref="CDD:29444"
misc_feature 339282..339284
/gene="ptsH"
/locus_tag="CNE_1c03410"
/note="active site"
/db_xref="CDD:29444"
misc_feature 339375..339377
/gene="ptsH"
/locus_tag="CNE_1c03410"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:29444"
gene 339559..341331
/gene="ptsI"
/locus_tag="CNE_1c03420"
/db_xref="GeneID:10916733"
CDS 339559..341331
/gene="ptsI"
/locus_tag="CNE_1c03420"
/codon_start=1
/transl_table=11
/product="phosphotransferase PtsI"
/protein_id="YP_004684189.1"
/db_xref="GI:339324496"
/db_xref="GeneID:10916733"
/translation="MPFALHGIPVSRGVAIGRAHLLAPAALDVSHYLVDEDQLDAEVE
RLRAARAAVRAELVALKRDLPRDAPEELGAFLDVHAMILDDEALAREPEALIRGRRYN
AEWALTTRLEELMRQFDEIEDEYLRERKTDIRQVVERILKALAGAPVLVPAPVPALAA
DGEAATGVIVVAHDISPADMLQFRHTIFHGFVTDMGGRTSHTAIVARSLDIPAAVGVQ
SASELIRQDDWIIIDGDAGLVIVDPTAIILEEYRHRQSERALEKKRLQRLRHTPAVTL
DGLEIDLLANIEMAEDAGAALSAGAVGVGLFRSEFLFMNRRDELPGEDEQFQAYRGAV
DAMHGLPVTIRTIDIGADKPLDARGDGRSDDFETALNPALGLRAIRWSLSEPGMFLTQ
LRALLRASAFGPVRLLVPMLAHASEIDQTLALIAKAKRQLDERGEAYDPGMKVGAMIE
IPAAVLLLPLFLRKMDFLSIGTNDLIQYTLAIDRADNAVAHLFDPLHPAVLQLVARTI
REANRAGVPVAVCGEMAGDPSMTRLLLGMGLREFSMHPAQLLRVKQEILHAHCERLEP
LVDQVLQAYDPDEQATALRQLARP"
misc_feature 339565..341316
/gene="ptsI"
/locus_tag="CNE_1c03420"
/note="Phosphoenolpyruvate-protein kinase (PTS system EI
component in bacteria) [Carbohydrate transport and
metabolism]; Region: PtsA; COG1080"
/db_xref="CDD:31278"
misc_feature 339571..339945
/gene="ptsI"
/locus_tag="CNE_1c03420"
/note="PEP-utilising enzyme, N-terminal; Region:
PEP-utilisers_N; pfam05524"
/db_xref="CDD:203267"
misc_feature 340057..340266
/gene="ptsI"
/locus_tag="CNE_1c03420"
/note="PEP-utilising enzyme, mobile domain; Region:
PEP-utilizers; pfam00391"
/db_xref="CDD:201201"
misc_feature 340342..341241
/gene="ptsI"
/locus_tag="CNE_1c03420"
/note="PEP-utilising enzyme, TIM barrel domain; Region:
PEP-utilizers_C; pfam02896"
/db_xref="CDD:145842"
gene 341513..341851
/gene="bfd"
/locus_tag="CNE_1c03430"
/db_xref="GeneID:10916734"
CDS 341513..341851
/gene="bfd"
/locus_tag="CNE_1c03430"
/codon_start=1
/transl_table=11
/product="bacterioferritin-like ferredoxin"
/protein_id="YP_004684190.1"
/db_xref="GI:339324497"
/db_xref="GeneID:10916734"
/translation="MPVPRAPQEGVVYVCICNQITDREIHGAAHLGIETLDELAETLG
VGTCCGRCRDCAQQVLQEGVAAVRNVTVATLANIQVVEISSCSASGPCTIMDTRDPAV
ANDQRKALVA"
misc_feature 341546..341710
/gene="bfd"
/locus_tag="CNE_1c03430"
/note="Bacterioferritin-associated ferredoxin [Inorganic
ion transport and metabolism]; Region: Bfd; COG2906"
/db_xref="CDD:32730"
gene 341978..342457
/gene="bfr2"
/locus_tag="CNE_1c03440"
/db_xref="GeneID:10916735"
CDS 341978..342457
/gene="bfr2"
/locus_tag="CNE_1c03440"
/note="cytochrome b1"
/codon_start=1
/transl_table=11
/product="bacterioferritin"
/protein_id="YP_004684191.1"
/db_xref="GI:339324498"
/db_xref="GeneID:10916735"
/translation="MKGDKKVIQHLNAQLKNELTAINQYFLHARMYRHWGLKKLGEVE
YKESIGEMKHADRLIERILMLDGLPNLQDLHKLLLGEDTPEMLKCDLKLEQTAHATVK
EGIAYCESVGDYVSREILVDILTDTEEHIEYLETQLDLIDKVGLQNYLQSQLEPGEQ"
misc_feature 341978..342445
/gene="bfr2"
/locus_tag="CNE_1c03440"
/note="Bacterioferritin (cytochrome b1) [Inorganic ion
transport and metabolism]; Region: Bfr; COG2193"
/db_xref="CDD:32376"
misc_feature 341981..342439
/gene="bfr2"
/locus_tag="CNE_1c03440"
/note="Bacterioferritin, ferritin-like diiron-binding
domain; Region: Bacterioferritin; cd00907"
/db_xref="CDD:153099"
misc_feature order(342020..342022,342044..342046,342065..342067,
342110..342112,342131..342133,342143..342145)
/gene="bfr2"
/locus_tag="CNE_1c03440"
/note="heme binding site [chemical binding]; other site"
/db_xref="CDD:153099"
misc_feature order(342026..342031,342035..342040,342050..342052,
342128..342130,342137..342139,342254..342259,
342266..342268,342278..342280,342353..342358)
/gene="bfr2"
/locus_tag="CNE_1c03440"
/note="ferroxidase pore; other site"
/db_xref="CDD:153099"
misc_feature order(342029..342031,342050..342052,342128..342130,
342137..342139,342257..342259,342278..342280,
342356..342358,342365..342367)
/gene="bfr2"
/locus_tag="CNE_1c03440"
/note="ferroxidase diiron center [ion binding]; other
site"
/db_xref="CDD:153099"
gene 342649..343752
/gene="selU"
/locus_tag="CNE_1c03450"
/db_xref="GeneID:10916736"
CDS 342649..343752
/gene="selU"
/locus_tag="CNE_1c03450"
/EC_number="2.9.1.-"
/codon_start=1
/transl_table=11
/product="tRNA 2-selenouridine synthase SelU"
/protein_id="YP_004684192.1"
/db_xref="GI:339324499"
/db_xref="GeneID:10916736"
/translation="MRPDTADFRTLFLSGVAMLDVRAPLEFARGAFPGAVNLPLMDDA
ERHEVGLCYAQKGQQAAIELGHQLVSGLRKAARIAAWAEFARAHPDGYLYCFRGGLRS
QLVQQWLHAAGVDYPRVTGGYKAMRGFLIETTDAAAAEQQWFVLGGLTGSGKTDVLAD
VPAAIDLEGHARHRGSAFGRRALAQPPQIDFENALAIDVLRHIDAGWRALVVEDEGRY
IGSRDVPQALTQRMQASPLVWLDASFDERVERVLRDYVQGLSAEFIAEKGSTEGFEAY
ATRLREAMAGISPRLGGARYGKLSALLDQALAQQAERGEVDLHRDWIAVLLREYYDPM
YAFQREQREARIVFRGDRAAVTDWLRAHTAQRD"
misc_feature 342649..343737
/gene="selU"
/locus_tag="CNE_1c03450"
/note="tRNA 2-selenouridine synthase; Provisional; Region:
PRK11784"
/db_xref="CDD:183313"
misc_feature 342655..343038
/gene="selU"
/locus_tag="CNE_1c03450"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cl00125"
/db_xref="CDD:212175"
misc_feature 342931..342933
/gene="selU"
/locus_tag="CNE_1c03450"
/note="active site residue [active]"
/db_xref="CDD:29073"
gene complement(343762..344535)
/gene="moeB"
/locus_tag="CNE_1c03460"
/db_xref="GeneID:10916737"
CDS complement(343762..344535)
/gene="moeB"
/locus_tag="CNE_1c03460"
/EC_number="2.7.7.n4"
/codon_start=1
/transl_table=11
/product="sulfur carrier protein MoeB"
/protein_id="YP_004684193.1"
/db_xref="GI:339324500"
/db_xref="GeneID:10916737"
/translation="MNDDQNDGLNDEQLLRYSRHILLDELGIEGQRRLLAGHALVIGA
GGLGAAALPFLASAGVGRITVVDNDQVDLTNLQRQIIHTTANVGRPKVDSAREGMLRI
NPGLEIVTVPARVGDAELDQLVATADVVLDCCDNFATRQAVNRACVGHKVPLVSGAAL
RFDGQISVFDRRQPDAPCYACLFPPAEPAPEVACATMGVFAPLVGMVGTVQAAEALKL
LAGVGESLAGRLLMVNALSMEWTTMRLARTPDCPVCAGH"
misc_feature complement(343783..344511)
/gene="moeB"
/locus_tag="CNE_1c03460"
/note="molybdopterin biosynthesis protein MoeB;
Provisional; Region: PRK05690"
/db_xref="CDD:180204"
misc_feature complement(343801..344490)
/gene="moeB"
/locus_tag="CNE_1c03460"
/note="ThiF_MoeB_HesA. Family of E1-like enzymes involved
in molybdopterin and thiamine biosynthesis family. The
common reaction mechanism catalyzed by MoeB and ThiF, like
other E1 enzymes, begins with a nucleophilic attack of the
C-terminal carboxylate of MoaD...; Region:
ThiF_MoeB_HesA_family; cd00757"
/db_xref="CDD:30111"
misc_feature complement(order(344119..344121,344137..344139,
344263..344265,344302..344304,344329..344331,
344335..344337,344395..344397,344401..344403,
344407..344409))
/gene="moeB"
/locus_tag="CNE_1c03460"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:30111"
misc_feature complement(order(343804..343809,343813..343815,
343834..343836,343846..343848,344041..344043,
344047..344049,344059..344064,344116..344118,
344128..344136,344395..344397))
/gene="moeB"
/locus_tag="CNE_1c03460"
/note="substrate interface [chemical binding]; other site"
/db_xref="CDD:30111"
gene complement(344702..346309)
/gene="ctpA"
/locus_tag="CNE_1c03470"
/db_xref="GeneID:10916738"
CDS complement(344702..346309)
/gene="ctpA"
/locus_tag="CNE_1c03470"
/EC_number="3.4.21.102"
/codon_start=1
/transl_table=11
/product="carboxy-terminal-processing protease CtpA"
/protein_id="YP_004684194.1"
/db_xref="GI:339324501"
/db_xref="GeneID:10916738"
/translation="MRKTLKNISLVSVGLVAGVLATLQISATAQNSSGPLPLDQLRLM
ADIFGQIKREYVEPVDDKKLLTEAIKGMVASLDPHSSYLDEKDFKELQEGTRGRFAGL
GIEISQEEGLVKVINPIEDTPAFRAGIQPGDLITRIDDKPVRGLPLEQAVKRMRGEPG
TKVTLTIYRKSEERTFPVSITRAEIRVQSVKAKMLDNNIGWIRLTSFQERTISDLSRK
LAELAQKNPNMKGLVLDLRNNGGGVLQGAVGVAAAFLPEDATVVSTNGQVPDAKRVYK
ASYNNYRLSSLEDDPLKGLPALYKKIPMVVLTNAYSASASEIVAGALQDHHRAQIMGK
TTFGKGSVQTVRPLTNDTGIKLTIAYYYTPSGKSIQAKGIRPDIPVDQNPEGDPDDAL
ITREIDTERHLHNKQESEEPEMTEREQRRVDELRRLEEENAKKSPEEREKDRRKKPVE
FGSAEDFMLQQAIAQLNGQPVKRSKSKLETNPPADNGKAAKPSGKSGAKGASAPAAKP
AAPAPAKQPPASAPIGEPLGTPTGKAP"
misc_feature complement(345068..346204)
/gene="ctpA"
/locus_tag="CNE_1c03470"
/note="Periplasmic protease [Cell envelope biogenesis,
outer membrane]; Region: Prc; COG0793"
/db_xref="CDD:31136"
misc_feature complement(<346055..346195)
/gene="ctpA"
/locus_tag="CNE_1c03470"
/note="C-terminal processing peptidase family S41; Region:
Peptidase_S41; cl02526"
/db_xref="CDD:207630"
misc_feature complement(345758..346015)
/gene="ctpA"
/locus_tag="CNE_1c03470"
/note="PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function in
posttranslational protein processing, maturation, and
disassembly or degradation, in Bacteria, Archaea, and
plant chloroplasts. May be responsible for...; Region:
PDZ_CTP_protease; cd00988"
/db_xref="CDD:29045"
misc_feature complement(order(345842..345847,345854..345859,
345992..345994,345998..346009))
/gene="ctpA"
/locus_tag="CNE_1c03470"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29045"
misc_feature complement(345167..>345715)
/gene="ctpA"
/locus_tag="CNE_1c03470"
/note="C-terminal processing peptidase; serine protease
family S41; Region: Peptidase_S41_CPP; cd07560"
/db_xref="CDD:143476"
misc_feature complement(order(345293..345295,345368..345370))
/gene="ctpA"
/locus_tag="CNE_1c03470"
/note="Catalytic dyad [active]"
/db_xref="CDD:143476"
gene complement(346489..347235)
/gene="gpmA"
/locus_tag="CNE_1c03480"
/db_xref="GeneID:10916739"
CDS complement(346489..347235)
/gene="gpmA"
/locus_tag="CNE_1c03480"
/EC_number="5.4.2.1"
/codon_start=1
/transl_table=11
/product="2,3-bisphosphoglycerate-independent
phosphoglycerate mutase"
/protein_id="YP_004684195.1"
/db_xref="GI:339324502"
/db_xref="GeneID:10916739"
/translation="MYKLVLIRHGESTWNLENRFTGWVDVDLTETGADQARQAGKLLK
DAGLGFDVAYTSVLKRAIRTLWHVQDEMDLMWIPVRNEWRLNERHYGALAGLNKAETA
AKFGDEQVLVWRRSYDTPPPALEPTDPRASYDDPRYANVPRNEIPLTECLKDTVARVM
PLWNESIAPDIQSGKRVVIAAHGNSIRALVKYLDQISDDDIVGLNIPNGTPLVYELDA
DLRPLRHYYLGDQDAIAASLAAVASQGKAR"
misc_feature complement(<346900..347229)
/gene="gpmA"
/locus_tag="CNE_1c03480"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature complement(order(347056..347058,347209..347214))
/gene="gpmA"
/locus_tag="CNE_1c03480"
/note="catalytic core [active]"
/db_xref="CDD:132718"
misc_feature complement(346552..>346767)
/gene="gpmA"
/locus_tag="CNE_1c03480"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
gene 347319..347837
/locus_tag="CNE_1c03490"
/db_xref="GeneID:10916740"
CDS 347319..347837
/locus_tag="CNE_1c03490"
/EC_number="2.8.1.-"
/codon_start=1
/transl_table=11
/product="rhodanese-like sulfurtransferase"
/protein_id="YP_004684196.1"
/db_xref="GI:339324503"
/db_xref="GeneID:10916740"
/translation="MSQTGDNGGWPCDGRAWTPNRVFYNAADPTYRNANVNFFADYNN
LALIALAVVSGGLLAWPAISRSTRGKTVNTAAATQLINKRGAVVVDIREPAEYAKGHL
PQAKSAPLADLPSRAAGLAKDKAAPIIVVCQTGQRSGKAQAALKEAGYSEIYALEGGI
AAWQQAGLPLVK"
misc_feature 347547..347810
/locus_tag="CNE_1c03490"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cd00158"
/db_xref="CDD:29073"
misc_feature 347712..347714
/locus_tag="CNE_1c03490"
/note="active site residue [active]"
/db_xref="CDD:29073"
gene 347921..348178
/locus_tag="CNE_1c03500"
/db_xref="GeneID:10916741"
CDS 347921..348178
/locus_tag="CNE_1c03500"
/codon_start=1
/transl_table=11
/product="glutaredoxin-like protein"
/protein_id="YP_004684197.1"
/db_xref="GI:339324504"
/db_xref="GeneID:10916741"
/translation="MARVVMYSTVVCPYCLMAERLLKSKGVEMIEKILIDREPGKREE
MMARTGRRTVPQIYIDETHVGGFDDLSALDRQGGLVPLLAA"
misc_feature 347930..348151
/locus_tag="CNE_1c03500"
/note="Glutaredoxin (GRX) family, GRX bacterial class 1
and 3 (b_1_3)-like subfamily; composed of bacterial GRXs,
approximately 10 kDa in size, and proteins containing a
GRX or GRX-like domain. GRX is a glutathione (GSH)
dependent reductase, catalyzing the...; Region:
GRX_GRXb_1_3_like; cd03418"
/db_xref="CDD:48633"
misc_feature order(347945..347947,347954..347962,348071..348073,
348077..348082)
/locus_tag="CNE_1c03500"
/note="GSH binding site [chemical binding]; other site"
/db_xref="CDD:48633"
misc_feature order(347954..347956,347963..347965)
/locus_tag="CNE_1c03500"
/note="catalytic residues [active]"
/db_xref="CDD:48633"
gene 348380..348898
/gene="secB"
/locus_tag="CNE_1c03510"
/db_xref="GeneID:10916742"
CDS 348380..348898
/gene="secB"
/locus_tag="CNE_1c03510"
/codon_start=1
/transl_table=11
/product="protein-export protein SecB"
/protein_id="YP_004684198.1"
/db_xref="GI:339324505"
/db_xref="GeneID:10916742"
/translation="MSDQQNTQQDDQPFFNIQRVYLKDMSLEQPNSPGIFLESEAPSV
EVQVNVGASQLQEGIFEVVVTGTVTTKVQDKVAFLVEAHQAGIFDIRNVPVEQLDPLL
GIACPTILYPYLRGNIADVITRAGFQAIHLSEINFQALYEQRLQAAMEEAQGAEGGNS
GIVMPDGSQARH"
misc_feature 348380..348814
/gene="secB"
/locus_tag="CNE_1c03510"
/note="preprotein translocase subunit SecB; Validated;
Region: PRK05751"
/db_xref="CDD:180234"
misc_feature order(348449..348451,348461..348463,348614..348616,
348620..348622)
/gene="secB"
/locus_tag="CNE_1c03510"
/note="SecA binding site; other site"
/db_xref="CDD:29643"
misc_feature order(348611..348613,348617..348619,348623..348625,
348629..348631)
/gene="secB"
/locus_tag="CNE_1c03510"
/note="Preprotein binding site; other site"
/db_xref="CDD:29643"
gene 349003..350019
/gene="gpsA"
/locus_tag="CNE_1c03520"
/db_xref="GeneID:10916743"
CDS 349003..350019
/gene="gpsA"
/locus_tag="CNE_1c03520"
/EC_number="1.1.1.94"
/codon_start=1
/transl_table=11
/product="glycerol-3-phosphate dehydrogenase"
/protein_id="YP_004684199.1"
/db_xref="GI:339324506"
/db_xref="GeneID:10916743"
/translation="MKLTFLGAGAWGTALASHAAATNDVVLWGRDPAQLAAIAATREN
AAYLPGVTLSGRLAVQADFEQAVAHAADDADGIVVVATPVAGLREMTRRLAARSARPV
SMLWLCKGFESGTHLLPHQMVRAELDAAGRTEGFAYGVLTGPSFAREVALGLPCALTV
AGNEPSLAERAQAAFHHHAMRIYGSDDLTGVEVGGAVKNVLAIATGASDGLGLGLNAR
AALVTRGLAEMTRLGLALGGRVETFMGLAGVGDLILTATGDLSRNRKVGQQLAAGQSL
EQILAGLGHVAERRALRPGGGRAGRHARRRDADRPRGLRGAVHGLSAADAVAQLLQRD
ARDE"
misc_feature 349003..350001
/gene="gpsA"
/locus_tag="CNE_1c03520"
/note="NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Validated; Region: gpsA; PRK00094"
/db_xref="CDD:178859"
misc_feature 349006..349506
/gene="gpsA"
/locus_tag="CNE_1c03520"
/note="NAD-dependent glycerol-3-phosphate dehydrogenase
N-terminus; Region: NAD_Gly3P_dh_N; pfam01210"
/db_xref="CDD:201664"
misc_feature 349558..>349866
/gene="gpsA"
/locus_tag="CNE_1c03520"
/note="NAD-dependent glycerol-3-phosphate dehydrogenase
C-terminus; Region: NAD_Gly3P_dh_C; pfam07479"
/db_xref="CDD:116100"
gene 350056..351033
/locus_tag="CNE_1c03530"
/db_xref="GeneID:10916744"
CDS 350056..351033
/locus_tag="CNE_1c03530"
/codon_start=1
/transl_table=11
/product="extra-cytoplasmic solute receptor"
/protein_id="YP_004684200.1"
/db_xref="GI:339324507"
/db_xref="GeneID:10916744"
/translation="MPTRRQALIALAAACAAGTSGSVFAQPWPARPIRMVVPFPPGSS
PDLIARIVTEKLAAALGQPVVVENRPGAGGNIGTGMVARAAPDGYTLLFTINGPLVTA
PTLSRNLNYDPFRQLAPVTLVATSPNVLVVDARLPVHNLREFVALARSKPAELNYGSP
GNGSASHLAMEQLKAMAGIDLQHVPYPGFPQITTAMVGGQVQAGFMVPAIAMPQVNAG
KLRVLAVTTTGRTAVLPSVPTVAESGYPGFEAISWQAVLAPAGTPQAVIDRLYRELVA
IIGSADVRDKMRAQYFVPAGTAPASLRQTMVSEKARWDKVIRAAGVQPE"
misc_feature 350113..351024
/locus_tag="CNE_1c03530"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3181"
/db_xref="CDD:32994"
misc_feature 350197..351018
/locus_tag="CNE_1c03530"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene complement(351050..351520)
/gene="trmL"
/locus_tag="CNE_1c03540"
/db_xref="GeneID:10916745"
CDS complement(351050..351520)
/gene="trmL"
/locus_tag="CNE_1c03540"
/EC_number="2.1.1.-"
/codon_start=1
/transl_table=11
/product="tRNA (cytidine/uridine-2'-O-)-methyltransferase
TrmL"
/protein_id="YP_004684201.1"
/db_xref="GI:339324508"
/db_xref="GeneID:10916745"
/translation="MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARM
RRAGLDYHEYATMRVHESWDALMASEQPDPARMFALTTRGSTPFGQVAFRPGDWFVFG
PETRGLSPERRDWFPPAQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQNGFEGGS"
misc_feature complement(351053..351520)
/gene="trmL"
/locus_tag="CNE_1c03540"
/note="Predicted rRNA methylase (SpoU class) [Translation,
ribosomal structure and biogenesis]; Region: CspR;
COG0219"
/db_xref="CDD:30568"
gene complement(351604..351783)
/locus_tag="CNE_1c03550"
/db_xref="GeneID:10916746"
CDS complement(351604..351783)
/locus_tag="CNE_1c03550"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684202.1"
/db_xref="GI:339324509"
/db_xref="GeneID:10916746"
/translation="MNLRGAFRLARAVRLDGLHVALVDDVMTSGATMHEAASVLKAHG
AARVSVSVIVALRTP"
misc_feature complement(351607..>351741)
/locus_tag="CNE_1c03550"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature complement(order(351616..351618,351688..351702,
351706..351714))
/locus_tag="CNE_1c03550"
/note="active site"
/db_xref="CDD:206754"
gene complement(351780..352253)
/locus_tag="CNE_1c03560"
/db_xref="GeneID:10916747"
CDS complement(351780..352253)
/locus_tag="CNE_1c03560"
/codon_start=1
/transl_table=11
/product="methyltransferase"
/protein_id="YP_004684203.1"
/db_xref="GI:339324510"
/db_xref="GeneID:10916747"
/translation="MNAAAAPDGLRPDGKYTRAPRWLPAPPARCWPACALALGRHFHC
PAITPTRWGDYASPQDQLVLALKFGHALPLAGWLAARLAAGLPGAWAGARPAPPDLIA
PIPLSPQRLAARGFNQAWEIARPLARHLGLRPTRCCCSASATPAASARWTWPPGR"
misc_feature complement(<351858..>351926)
/locus_tag="CNE_1c03560"
/note="Predicted amidophosphoribosyltransferases [General
function prediction only]; Region: ComFC; COG1040"
/db_xref="CDD:223970"
gene 352210..353277
/locus_tag="CNE_1c03570"
/db_xref="GeneID:10916749"
CDS 352210..353277
/locus_tag="CNE_1c03570"
/codon_start=1
/transl_table=11
/product="amidophosphoribosyltransferase"
/protein_id="YP_004684204.1"
/db_xref="GI:339324511"
/db_xref="GeneID:10916749"
/translation="MPSGRSPSGAAAAFIRRPGLILYLSPRRFLIFLLPCLPVSLHAA
DSPDAFLPPARLTRLAFDRRSRGFGQLDFLLGEIGRRMQERMEVIRLAPQRALDIGCG
HGQGLAGLRDRFPDAQIAGLDISGAMLAEAGQRDPQRRPGWIGRMLGKRPLFDLVQGD
LATLPFAPASFDLLWSNLALHWHPEPHRVFPEWHRVARDEGLVLFSLFGPDTLKELRA
AFAEVDEAPHTLRFVDMHDIGDMLVHSGWSTPVMDMETLTVTYESPATLLREVQAFGG
LRGPAAALPQGLRGRGWYQALAQALERRRNADGVIPLTFEIVYGHAWKLAPRGGQAVD
DQGRAVVPLDQIGRARPRRTS"
misc_feature 352492..352833
/locus_tag="CNE_1c03570"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(352504..352524,352576..352581,352684..352692,
352738..352740)
/locus_tag="CNE_1c03570"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 353550..354059
/locus_tag="CNE_1c03580"
/db_xref="GeneID:10916748"
CDS 353550..354059
/locus_tag="CNE_1c03580"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684205.1"
/db_xref="GI:339324512"
/db_xref="GeneID:10916748"
/translation="MQDLGIALQTAGGDSGGNLDGPLPAPHDWLMKRNCSLSPRQVGW
FYLSILTVSLAIALFFAWQGSWLVLPFASIELIGLGIALLVYARHATDYERVSITDGM
LVVETASGTKVTRREFNPRWVRVELGESFRALVTLRSGGREVQVGCYVDPYRRRKFAQ
ELAAALRRL"
misc_feature 353640..354047
/locus_tag="CNE_1c03580"
/note="Integral membrane protein (DUF2244); Region:
DUF2244; pfam10003"
/db_xref="CDD:150652"
gene 354118..355380
/gene="ctaC"
/locus_tag="CNE_1c03590"
/db_xref="GeneID:10916750"
CDS 354118..355380
/gene="ctaC"
/locus_tag="CNE_1c03590"
/EC_number="1.9.3.1"
/codon_start=1
/transl_table=11
/product="Aa3-type cytochrome oxidase subunit II"
/protein_id="YP_004684206.1"
/db_xref="GI:339324513"
/db_xref="GeneID:10916750"
/translation="MKMWKKASAVCLAGASLLASQTASAVSDMPGGPAVRQLNLTEPV
TKIAEQIHWLNWMMLIMCTVIFIAVFSVMFYSVFKHRKSKGAKPAAFHESITVEVIWT
IVPFIIVIAMALPATKTVVAMKDTTNSDVTIKATGYQWKWGYDYLKGEGEGISFVSTL
TTPREQINNEQPKSNTYLMEVDNELVVPVNKKIRIVTTANDVIHAWMIPAFGVKQDAI
PGFVRDTWFKAEKIGVYRGQCAELCGKEHAFMPIVVRVVSDADYTKWVDGKKKELAAK
ADDPNKTWTLDEAKVRGEKIYAANCAVCHQPNGKGGGAFPALDGSKVVNGPKAGQMHI
LLEGKGGMPSWKQLSDTELAMVMTYTRNAWSNKTGEVIQPSDFVGARAGKFPEGGGAA
GGEAPKAEAKPADKADKQASLAGNRVAG"
misc_feature 354226..354915
/gene="ctaC"
/locus_tag="CNE_1c03590"
/note="cytochrome c oxidase subunit II; Provisional;
Region: COX2; MTH00038"
/db_xref="CDD:177113"
misc_feature 354226..354462
/gene="ctaC"
/locus_tag="CNE_1c03590"
/note="Cytochrome C oxidase subunit II, transmembrane
domain; Region: COX2_TM; pfam02790"
/db_xref="CDD:202397"
misc_feature 354508..354888
/gene="ctaC"
/locus_tag="CNE_1c03590"
/note="Cytochrome C oxidase subunit II, periplasmic
domain; Region: COX2; pfam00116"
/db_xref="CDD:201014"
misc_feature <354934..355230
/gene="ctaC"
/locus_tag="CNE_1c03590"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
misc_feature 354991..355194
/gene="ctaC"
/locus_tag="CNE_1c03590"
/note="Cytochrome C oxidase, cbb3-type, subunit III;
Region: Cytochrome_CBB3; pfam13442"
/db_xref="CDD:205620"
gene 355419..357026
/gene="ctaD"
/locus_tag="CNE_1c03600"
/db_xref="GeneID:10916751"
CDS 355419..357026
/gene="ctaD"
/locus_tag="CNE_1c03600"
/EC_number="1.9.3.1"
/codon_start=1
/transl_table=11
/product="Aa3-type cytochrome oxidase subunit I"
/protein_id="YP_004684207.1"
/db_xref="GI:339324514"
/db_xref="GeneID:10916751"
/translation="MSTATPDALAHPHDHAHDDHAHDHPHGWRRWLFATNHKDIGTLY
LLFSFIMLLSGGLLALLIRLELFEPGLQFFRPELFNQFTTMHGLVMVFGAIMPAFVGF
ANWMIPLQIGASDMAFARMNNFSFWLMPPAALLLAGSFLVPGGATAAGWTLYAPLSVQ
MGPGMDMAIFAMHIMGASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLI
AVMPVLAGAITMVLTDRHFGTSFFSAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIV
SQVVPAFARKRLFGYSSMVYATASIAILSFIVWAHHMFTTGMPVTGQLFFMYATMLIA
VPTAVKIFNWIATMWRGSMTFETPMLFSIGFIFVFTIGGFTGLMPAVAPIDIQLQDTY
FIVAHFHYVLVAGSLFALFAGFYYWGPKWSGFMYNETRGQIHFWGSIIFFNVTFFPMH
FLGLAGMPRRYADYPTQFADFNAIASIGALGFGLMQVYFFFFVVLPSYRGGEKAADKP
WDGAEGLEWTVPSPAPFHTFEVPPQVR"
misc_feature 355497..357020
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Heme/copper-type cytochrome/quinol oxidases,
subunit 1 [Energy production and conversion]; Region:
CyoB; COG0843"
/db_xref="CDD:31185"
misc_feature 355521..356975
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Cytochrome C oxidase subunit I. Cytochrome c
oxidase (CcO), the terminal oxidase in the respiratory
chains of eukaryotes and most bacteria, is a multi-chain
transmembrane protein located in the inner membrane of
mitochondria and the cell membrane of...; Region:
Cyt_c_Oxidase_I; cd01663"
/db_xref="CDD:29934"
misc_feature order(355521..355523,355758..355760,355770..355772,
355776..355778,355797..355799,355914..355916,
355926..355928,355980..355982,355992..355994,
356052..356054,356073..356075,356082..356084,
356106..356108,356133..356141,356154..356159,
356163..356165,356193..356195,356304..356306,
356313..356315,356322..356327,356337..356339)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Subunit I/III interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(355548..355550,355728..355730,355761..355763,
355782..355784,355791..355793,355950..355955,
355971..355973,355983..355985)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="D-pathway; other site"
/db_xref="CDD:29934"
misc_feature order(355566..355568,355578..355580,355587..355589,
355599..355601,355836..355841,356679..356681,
356901..356903,356910..356912)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Subunit I/VIIc interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(355608..355610,355617..355622,356703..356705,
356712..356717,356814..356816,356868..356870)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Subunit I/IV interface [polypeptide binding]; other
site"
/db_xref="CDD:29934"
misc_feature order(355656..355658,356163..356165,356274..356276,
356283..356288,356361..356369,356376..356378,
356385..356387,356409..356411,356433..356435,
356442..356444,356463..356471,356505..356507,
356559..356564,356568..356570,356574..356588,
356778..356783,356793..356801,356826..356831)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Subunit I/II interface [polypeptide binding]; other
site"
/db_xref="CDD:29934"
misc_feature order(355674..355676,356613..356615,356625..356627,
356751..356753,356862..356864)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Low-spin heme (heme a) binding site [chemical
binding]; other site"
/db_xref="CDD:29934"
misc_feature order(355830..355832,355839..355841)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Subunit I/VIIa interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(355896..355898,356121..356132)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Subunit I/VIa interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(356052..356054,356073..356075,356193..356195,
356304..356306,356313..356315,356322..356327,
356337..356339)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Dimer interface; other site"
/db_xref="CDD:29934"
misc_feature order(356163..356165,356178..356183,356571..356573,
356583..356588,356793..356795)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Putative water exit pathway; other site"
/db_xref="CDD:29934"
misc_feature order(356202..356204,356349..356354,356607..356609)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Binuclear center (heme a3/CuB) [ion binding]; other
site"
/db_xref="CDD:29934"
misc_feature order(356202..356204,356214..356216,356247..356249,
356349..356354,356427..356429,356436..356438)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="K-pathway; other site"
/db_xref="CDD:29934"
misc_feature order(356277..356279,356289..356291,356970..356972)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Subunit I/Vb interface [polypeptide binding]; other
site"
/db_xref="CDD:29934"
misc_feature order(356352..356354,356583..356588,356793..356798)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:29934"
misc_feature 356367..356369
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Subunit I/VIb interface; other site"
/db_xref="CDD:29934"
misc_feature 356466..356468
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Subunit I/VIc interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(356610..356612,356793..356798)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Electron transfer pathway; other site"
/db_xref="CDD:29934"
misc_feature order(356706..356708,356877..356879)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Subunit I/VIIIb interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
misc_feature order(356814..356816,356826..356828)
/gene="ctaD"
/locus_tag="CNE_1c03600"
/note="Subunit I/VIIb interface [polypeptide binding];
other site"
/db_xref="CDD:29934"
gene 357101..357232
/locus_tag="CNE_1c03610"
/db_xref="GeneID:10916752"
CDS 357101..357232
/locus_tag="CNE_1c03610"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684208.1"
/db_xref="GI:339324515"
/db_xref="GeneID:10916752"
/translation="MQSPDKSPSRPDQKAANRRLGLILLSIVVVFFLGFFAKMMFLG"
gene 357250..357861
/gene="ctaG"
/locus_tag="CNE_1c03620"
/db_xref="GeneID:10916753"
CDS 357250..357861
/gene="ctaG"
/locus_tag="CNE_1c03620"
/codon_start=1
/transl_table=11
/product="cytochrome c oxidase assembly protein CtaG"
/protein_id="YP_004684209.1"
/db_xref="GI:339324516"
/db_xref="GeneID:10916753"
/translation="MSNDQQAGREADKRFNRGMMLRLVVIVAVMFGFGYALVPLYKKI
CEITGINVITTRELHGAVKNTQVDKSRTITVEFDSNARGPFAFRPVKNSMEVHPGEMA
TIVYEVANGQPRDISAQAIPSYAPKQATQYFMKLECFCFKQQTLKAKEAREMPVVFVI
DPALPKDVKNITLSYTFFEVGAPVAQAPEGQVAPQPAPAGKGI"
misc_feature 357277..357831
/gene="ctaG"
/locus_tag="CNE_1c03620"
/note="cytochrome C oxidase assembly protein; Provisional;
Region: PRK05089"
/db_xref="CDD:179930"
gene 357901..358125
/locus_tag="CNE_1c03630"
/db_xref="GeneID:10916754"
CDS 357901..358125
/locus_tag="CNE_1c03630"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684210.1"
/db_xref="GI:339324517"
/db_xref="GeneID:10916754"
/translation="MDEMKDAVKRKMSFAQTMRAVLWSFIGLRKGAEHERDMARLNPV
HVVIAGVIAAAIFIAVLVVIVRIVVGQAAG"
misc_feature 357940..>358029
/locus_tag="CNE_1c03630"
/note="Protein of unknown function (DUF2970); Region:
DUF2970; pfam11174"
/db_xref="CDD:204604"
gene 358270..359130
/gene="ctaE"
/locus_tag="CNE_1c03640"
/db_xref="GeneID:10916755"
CDS 358270..359130
/gene="ctaE"
/locus_tag="CNE_1c03640"
/EC_number="1.9.3.1"
/codon_start=1
/transl_table=11
/product="Aa3-type cytochrome oxidase subunit III"
/protein_id="YP_004684211.1"
/db_xref="GI:339324518"
/db_xref="GeneID:10916755"
/translation="MSANRANAPYYFVPGPSRHPITASFGLLMTGAGAAGWVNGQPWA
PYLCGFGLLWFLFVLKSWFGDAISESEGGMYGKNIDLSFRWSMGWFIFSEVMFFAAFF
GALFYARTIAMPWLGDLNNKILWPDFAAVWPNTGPAGVVESFQTMGPWPIPTINTALL
LMSGLTLTWAHHALLAGKRSQLIQGLSLTILLGAVFMCFQVYEYMHAYSELNLKLSSG
IYGSTFFLLTGFHGFHVTMGAIMLTVVLIRVLKGHFTPDHHFAFEGAAWYWHFVDVVW
LFLYVVVYWL"
misc_feature 358330..359079
/gene="ctaE"
/locus_tag="CNE_1c03640"
/note="Cytochrome c oxidase subunit III. Cytochrome c
oxidase (CcO), the terminal oxidase in the respiratory
chains of eukaryotes and most bacteria, is a multi-chain
transmembrane protein located in the inner membrane of
mitochondria and the cell membrane of...; Region:
Cyt_c_Oxidase_III; cd01665"
/db_xref="CDD:29485"
misc_feature order(358450..358452,358459..358464,358471..358473,
358480..358482,358483..358485)
/gene="ctaE"
/locus_tag="CNE_1c03640"
/note="Subunit III/VIIa interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature order(358453..358458,358465..358470,358477..358479,
358492..358494,358525..358530,358537..358539,
358990..358992,359011..359013,359047..359052)
/gene="ctaE"
/locus_tag="CNE_1c03640"
/note="Phospholipid binding site [chemical binding]; other
site"
/db_xref="CDD:29485"
misc_feature order(358501..358503,358510..358515,358546..358548,
358555..358557,358567..358572,358588..358590,
358921..358926,358933..358935,358945..358947)
/gene="ctaE"
/locus_tag="CNE_1c03640"
/note="Subunit I/III interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature 358672..358674
/gene="ctaE"
/locus_tag="CNE_1c03640"
/note="Subunit III/VIb interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
misc_feature order(358717..358725,358774..358776,358852..358854,
358882..358890,358915..358923)
/gene="ctaE"
/locus_tag="CNE_1c03640"
/note="Subunit III/VIa interface; other site"
/db_xref="CDD:29485"
misc_feature 358810..358812
/gene="ctaE"
/locus_tag="CNE_1c03640"
/note="Subunit III/Vb interface [polypeptide binding];
other site"
/db_xref="CDD:29485"
gene complement(359260..359469)
/locus_tag="CNE_1c03650"
/db_xref="GeneID:10916756"
CDS complement(359260..359469)
/locus_tag="CNE_1c03650"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684212.1"
/db_xref="GI:339324519"
/db_xref="GeneID:10916756"
/translation="MRIVIIVAFILIIASLASALFFMMRDRGTTPNMMRSLMLRVGFS
VALFLFILFSNWMGWIHSTGIRMAP"
misc_feature complement(359284..>359403)
/locus_tag="CNE_1c03650"
/note="Protein of unknown function (DUF2909); Region:
DUF2909; pfam11137"
/db_xref="CDD:204595"
gene 359545..360309
/gene="surf"
/locus_tag="CNE_1c03660"
/db_xref="GeneID:10916757"
CDS 359545..360309
/gene="surf"
/locus_tag="CNE_1c03660"
/codon_start=1
/transl_table=11
/product="cytochrome oxidase assembly protein, SurF"
/protein_id="YP_004684213.1"
/db_xref="GI:339324520"
/db_xref="GeneID:10916757"
/translation="MTVRRWFSPLPLAAALVVIAVTCALGNWQLNRAHDKEARAARLQ
ALSAQPPVLLGTAPLPQVVTDRTVRVTGRFDTARTVLLDNRPHGNGSSPGDSRAGFLV
LTPLRISAASPAPAGAGAMQAVLVLRGWLPRDAQDRTRIAPFPTPEGEVTIEGTALAA
VPRVYSLGQDAAGSKIRQNLDIAAYAAETGLALHPLVLEQRSDTGDGLARDWAPADLG
ADRHYGYAFQWFGLAALTVVLVAVLGWRRARRVAAP"
misc_feature 359620..360237
/gene="surf"
/locus_tag="CNE_1c03660"
/note="SURF1 superfamily. Surf1/Shy1 has been implicated
in the posttranslational steps of the biogenesis of the
mitochondrially-encoded Cox1 subunit of cytochrome c
oxidase (complex IV). Cytochrome c oxidase (complex IV),
the terminal electron-transferring...; Region: SURF1;
cd06662"
/db_xref="CDD:119401"
gene 360315..361013
/gene="sco1"
/locus_tag="CNE_1c03670"
/db_xref="GeneID:10916758"
CDS 360315..361013
/gene="sco1"
/locus_tag="CNE_1c03670"
/codon_start=1
/transl_table=11
/product="cytochrome oxidase assembly protein, Sco1/SenC
family"
/protein_id="YP_004684214.1"
/db_xref="GI:339324521"
/db_xref="GeneID:10916758"
/translation="MNRAHALAEDKGQTYSMAQQDSAPAAAASPPDTRIDARTRRGRL
QMLMLLLVCASPVIASYFTYYVIKPRGGATNYGALVDPQRPMPPVRVTDEQGRAVPLE
QFRGKWLLVTADPSACDEACAKKLFTIRQIRAGQGQDRERIVPVWLVTDDGKLDERLT
AAYNEPYAGVRFLRIDRQAAQQWLPAEPGKRAEDTLFLVDPLGNLMMRFPQDPDPKKM
SGDLKKLLKVSRIG"
misc_feature 360567..360944
/gene="sco1"
/locus_tag="CNE_1c03670"
/note="Protein Disulfide Oxidoreductases and Other
Proteins with a Thioredoxin fold; Region:
Thioredoxin_like; cl00388"
/db_xref="CDD:213097"
gene 361024..362136
/gene="ctaA"
/locus_tag="CNE_1c03680"
/db_xref="GeneID:10916759"
CDS 361024..362136
/gene="ctaA"
/locus_tag="CNE_1c03680"
/codon_start=1
/transl_table=11
/product="hemeA synthase CtaA"
/protein_id="YP_004684215.1"
/db_xref="GI:339324522"
/db_xref="GeneID:10916759"
/translation="MLLQLAIIGILIALFPLSYVLVKGDRNKYRKLAWITAFLTLDLI
MFGSFTRLTDSGLGCPDWPGCYGHSNPHAAMEPIRAAETALPSGPVTLAKAWIEMIHR
YFAMAVGVLIITLMVLAWVKRRELKQSPWFATGVLLLVCVQGAFGAFTVTLKLQPVIV
VTHLMLGMALLAVLIQLGSRNDPPHPVAAQAARLRWPVRIGLLLLVIQIFLGGWVSTN
YAVLACTDFPLCNGQLVPEMDFRHGFTLWRQLGMTADGDYIPHAALVAIHWVHRGFAF
VVLGYLAWLGLRARRLEGLARAAGWLLGTLVLQLATGMSNIVFDWPLVAAVAHNGGAA
LLLLLLVRLHYNTGLAGLTMRAAGAPAAVPNAARAT"
misc_feature 361069..>361728
/gene="ctaA"
/locus_tag="CNE_1c03680"
/note="Uncharacterized protein required for cytochrome
oxidase assembly [Posttranslational modification, protein
turnover, chaperones]; Region: CtaA; COG1612"
/db_xref="CDD:31800"
misc_feature 361111..361989
/gene="ctaA"
/locus_tag="CNE_1c03680"
/note="Cytochrome oxidase assembly protein; Region:
COX15-CtaA; pfam02628"
/db_xref="CDD:202319"
gene 362133..363077
/gene="sco2"
/locus_tag="CNE_1c03690"
/db_xref="GeneID:10916760"
CDS 362133..363077
/gene="sco2"
/locus_tag="CNE_1c03690"
/codon_start=1
/transl_table=11
/product="cytochrome oxidase assembly protein, Sco1/SenC
family"
/protein_id="YP_004684216.1"
/db_xref="GI:339324523"
/db_xref="GeneID:10916760"
/translation="MKDKTPSVVTATHPHSLGKLSRIRHLARQYAALTKPRVTQLAVF
CAIIGMFLATPGMVPWRVLIGGAAGIWLLAGAAFAINCLVEQKIDALMRRTAWRPSAT
GEITTPQTLVFSAILGGAGMWLLHVYANDLTMWLTFATFLGYAVVYTILLKPATPQNI
VIGGLSGAMPPALGWAAVAGEVPAEAWFLVLIIFTWTPPHFWALALYRRADYAKSGLP
MLPVTHGERYTLLHILLYTLIMIAATLLPFVYGMSGYIYLAAALALGAGFLAYAWKMY
RNYSDELAQRTFRFSILYLSLLFAALLVDHYFKFVPQV"
misc_feature 362193..363068
/gene="sco2"
/locus_tag="CNE_1c03690"
/note="protoheme IX farnesyltransferase; Provisional;
Region: PRK04375"
/db_xref="CDD:179840"
gene 363206..363826
/gene="ctaB"
/locus_tag="CNE_1c03700"
/db_xref="GeneID:10916761"
CDS 363206..363826
/gene="ctaB"
/locus_tag="CNE_1c03700"
/EC_number="2.5.1.-"
/codon_start=1
/transl_table=11
/product="protoheme IX farnesyltransferase"
/protein_id="YP_004684217.1"
/db_xref="GI:339324524"
/db_xref="GeneID:10916761"
/translation="MPRLSPASGLFAAFRRFSLLAALALAVAACGQQKASFRNVDITG
AADFGKDFSLTDHHGKVRTIADFKGKAVVMFFGYTHCPDVCPTTMAELKAVMEKLGPD
ADRVQVLFVTVDPERDTQALLAQYVPAFDARFLGLRPADEAALQKVTKDFKVFYAKVP
GSSPSNYTVDHSAGSYVFDPEGKLRLFIRHGQGPDPIAHDLKQLLS"
misc_feature 363332..363820
/gene="ctaB"
/locus_tag="CNE_1c03700"
/note="Uncharacterized protein SCO1/SenC/PrrC, involved in
biogenesis of respiratory and photosynthetic systems
[General function prediction only]; Region: COG1999"
/db_xref="CDD:32182"
misc_feature 363350..363775
/gene="ctaB"
/locus_tag="CNE_1c03700"
/note="SCO (an acronym for Synthesis of Cytochrome c
Oxidase) family; composed of proteins similar to Sco1, a
membrane-anchored protein possessing a soluble domain with
a TRX fold. Members of this family are required for the
proper assembly of cytochrome c...; Region: SCO; cd02968"
/db_xref="CDD:48517"
misc_feature order(363446..363448,363458..363460,363716..363718)
/gene="ctaB"
/locus_tag="CNE_1c03700"
/note="Cu(I) binding site [ion binding]; other site"
/db_xref="CDD:48517"
gene complement(363933..364859)
/gene="rpoH"
/locus_tag="CNE_1c03710"
/db_xref="GeneID:10916762"
CDS complement(363933..364859)
/gene="rpoH"
/locus_tag="CNE_1c03710"
/EC_number="2.7.7.6"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase sigma subunit RpoH"
/protein_id="YP_004684218.1"
/db_xref="GI:339324525"
/db_xref="GeneID:10916762"
/translation="MNAVLSADQTLNNRLPTAPRSTGSFALAFPATVGNLDSYIQAVH
RIPLLTAEEEQRLARELRDHDSVDAARQMVMSHLRLVVSIARQYLGYGLPHADLIQEG
NIGLMKAVKRFDPDQGVRLVSYAMHWIKAEIHEYVLKNWRMVKVATTKAQRKLFFNLR
SHKQGAHTFTPEQVEAVARELNVKPEEVMEMETRLSGGDLALEGQIDDGEEEFAPIAY
LADNHNEPTRVLEAKRHDRMQVEGLEEALAKLDERSRRIIEARWLHVEDDGSGGSTLH
ELADEFGVSAERIRQIEAAAMKKMKGALQAFA"
misc_feature complement(363936..364799)
/gene="rpoH"
/locus_tag="CNE_1c03710"
/note="RNA polymerase factor sigma-32; Reviewed; Region:
PRK06596"
/db_xref="CDD:180635"
misc_feature complement(364431..364643)
/gene="rpoH"
/locus_tag="CNE_1c03710"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(363957..364133)
/gene="rpoH"
/locus_tag="CNE_1c03710"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(363969..363971,363975..363980,
363984..363992,363996..364001,364005..364007,
364035..364040,364077..364079,364107..364109))
/gene="rpoH"
/locus_tag="CNE_1c03710"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 365200..366075
/locus_tag="CNE_1c03720"
/db_xref="GeneID:10916763"
CDS 365200..366075
/locus_tag="CNE_1c03720"
/codon_start=1
/transl_table=11
/product="pirin"
/protein_id="YP_004684219.1"
/db_xref="GI:339324526"
/db_xref="GeneID:10916763"
/translation="MSAIEHLLKPHVRDLGDFTVRRLLPAAATQTVGPFIFFDHMGPV
QLPPGAGADVRPHPHIGLATVTYLFEGEIIHRDSLGSDQAIRPGDVNWMTAGRGIVHS
ERSPEHVRPAGARLHGIQTWVALPQEHEGAEPSFFHHPAATLPRIERPGVRMVVIAGD
AFGQISPVKVFSRTLYVAIELDAGASVEIPADHAERGIYPVDGAVALDGEPLPAEHMV
VLTPGQPATLTATAPSRVMLLGGDPTDGHRFIYWNFVASSKVAIEAAAQRWEDDQFPH
VPGETERIPLPPRKA"
misc_feature 365200..366024
/locus_tag="CNE_1c03720"
/note="Pirin-related protein [General function prediction
only]; Region: COG1741"
/db_xref="CDD:31927"
misc_feature 365251..365568
/locus_tag="CNE_1c03720"
/note="Pirin; Region: Pirin; pfam02678"
/db_xref="CDD:202346"
misc_feature 365725..366024
/locus_tag="CNE_1c03720"
/note="Pirin C-terminal cupin domain; Region: Pirin_C;
pfam05726"
/db_xref="CDD:203319"
gene complement(366095..367087)
/gene="trpD1"
/locus_tag="CNE_1c03730"
/db_xref="GeneID:10916764"
CDS complement(366095..367087)
/gene="trpD1"
/locus_tag="CNE_1c03730"
/EC_number="2.4.2.18"
/codon_start=1
/transl_table=11
/product="anthranilate phosphoribosyltransferase TrpD"
/protein_id="YP_004684220.1"
/db_xref="GI:339324527"
/db_xref="GeneID:10916764"
/translation="MTTPATSFPAARYIKEIGRGVNGARALPRDDAQALFDAMLAGRV
SDLELGAILMAYRIKGEAPHELAGMLEAAHAHCQPLPAPPDRQVVVIPSYNGARKQPN
LVPLLALLLAREDVPVLVHGTRLFNGRVTSMTLFEALGVPLCATTDEASARLREGSDL
GPLAVLPVDVLSPGLSQLLERRTVIGLRNSAHTVAKMLQPVGEHSPAEGLRLYSYTHP
EYRETLTDYFSHEPANVLLARGTEGEVVADARRTSRIDWLHEGHQQTLVDPAVGSLAE
VPELPPGSDAGQTVAWIRRVLDGAAPVPAPIAIQVDAIRECLRQGTHVTWASPV"
misc_feature complement(366098..367066)
/gene="trpD1"
/locus_tag="CNE_1c03730"
/note="glycosyl transferase family protein; Provisional;
Region: PRK08136"
/db_xref="CDD:181246"
misc_feature complement(366872..367051)
/gene="trpD1"
/locus_tag="CNE_1c03730"
/note="Glycosyl transferase family, helical bundle domain;
Region: Glycos_trans_3N; pfam02885"
/db_xref="CDD:145834"
gene complement(367183..367986)
/gene="nasD"
/locus_tag="CNE_1c03740"
/db_xref="GeneID:10916765"
CDS complement(367183..367986)
/gene="nasD"
/locus_tag="CNE_1c03740"
/codon_start=1
/transl_table=11
/product="nitrate transport protein NasD"
/protein_id="YP_004684221.1"
/db_xref="GI:339324528"
/db_xref="GeneID:10916765"
/translation="MDKFVSIENVGQTFKTRKGPFVALRDINLQIAEGEFITLIGHSG
CGKSTLLNLVAGLATPTTGALICAGREIAGPGPERAVVFQNHSLLPWLTCFENVYLGV
ERVFAANESKPQLKARTHDTLALVGLTHAENKYPHEISGGMKQRVGIARALAMAPKVL
LMDEPFGALDALTRAHLQDELIKIVARTRSTVVMVTHDVDEAVLLADRIVMMTNGPAA
TIGEILKVGLPRPRDRVALADDKAYHACRTAVLDFLYRKQRNPALQEAA"
misc_feature complement(367303..367974)
/gene="nasD"
/locus_tag="CNE_1c03740"
/note="NrtD and SsuB are the ATP-binding subunits of the
bacterial ABC-type nitrate and sulfonate transport
systems, respectively. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:73052"
misc_feature complement(367225..367917)
/gene="nasD"
/locus_tag="CNE_1c03740"
/note="nitrate transport ATP-binding subunits C and D;
Region: ntrCD; TIGR01184"
/db_xref="CDD:130252"
misc_feature complement(367843..367866)
/gene="nasD"
/locus_tag="CNE_1c03740"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(order(367396..367398,367495..367500,
367735..367737,367840..367848,367852..367857))
/gene="nasD"
/locus_tag="CNE_1c03740"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73052"
misc_feature complement(367735..367746)
/gene="nasD"
/locus_tag="CNE_1c03740"
/note="Q-loop/lid; other site"
/db_xref="CDD:73052"
misc_feature complement(367543..367572)
/gene="nasD"
/locus_tag="CNE_1c03740"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73052"
misc_feature complement(367495..367512)
/gene="nasD"
/locus_tag="CNE_1c03740"
/note="Walker B; other site"
/db_xref="CDD:73052"
misc_feature complement(367477..367488)
/gene="nasD"
/locus_tag="CNE_1c03740"
/note="D-loop; other site"
/db_xref="CDD:73052"
misc_feature complement(367390..367410)
/gene="nasD"
/locus_tag="CNE_1c03740"
/note="H-loop/switch region; other site"
/db_xref="CDD:73052"
gene complement(368005..368910)
/gene="nrtB"
/locus_tag="CNE_1c03750"
/db_xref="GeneID:10916766"
CDS complement(368005..368910)
/gene="nrtB"
/locus_tag="CNE_1c03750"
/codon_start=1
/transl_table=11
/product="nitrate transport permease NrtB"
/protein_id="YP_004684222.1"
/db_xref="GI:339324529"
/db_xref="GeneID:10916766"
/translation="MNAIAHTTPDGATVAASADPDTKERARRREQEIAAQARRAQRRE
AVAAPVLKAVPPVLGFALFVLAWHGIATMIPAIPTPQATWNAAVPLFADPFYRNGPND
QGIGWNVLASLARVAAGFGLAALVGIPAGFLIGRFAFLNAMTAPVISLLRPVSPLAWL
PIGLLLFKAANPAAIWAIFICSIWPMVINTAVGVTRVPQDYLNVARVLDLSEWKVFTR
VLFPAVLPYMLTGVRLSIGTAWLVIVAAEMLTGGTGIGFWLWDEWNNLKVEHIVIAIF
VIGIIGLLLEHALLALARRFSYGAN"
misc_feature complement(368104..368736)
/gene="nrtB"
/locus_tag="CNE_1c03750"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature complement(368140..368529)
/gene="nrtB"
/locus_tag="CNE_1c03750"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(368167..368172,368179..368190,
368209..368211,368218..368223,368263..368265,
368314..368316,368323..368328,368338..368340,
368344..368349,368356..368358,368359..368364,
368419..368421,368425..368430,368437..368466,
368470..368481,368506..368508,368521..368526))
/gene="nrtB"
/locus_tag="CNE_1c03750"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(368173..368190,368419..368463))
/gene="nrtB"
/locus_tag="CNE_1c03750"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(368170..368172,368377..368379,
368419..368421))
/gene="nrtB"
/locus_tag="CNE_1c03750"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(368242..368244,368254..368259,
368275..368313))
/gene="nrtB"
/locus_tag="CNE_1c03750"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(368962..370272)
/gene="nrtA"
/locus_tag="CNE_1c03760"
/db_xref="GeneID:10916767"
CDS complement(368962..370272)
/gene="nrtA"
/locus_tag="CNE_1c03760"
/codon_start=1
/transl_table=11
/product="nitrate transport protein NrtA"
/protein_id="YP_004684223.1"
/db_xref="GI:339324530"
/db_xref="GeneID:10916767"
/translation="MPSRLRIAKPLHAAVHVSDAAADAVPASSGRRRVLATIAGASVM
TLVDPLVRAGAWAAGSDAPEKTDVRIGFIPLTDCASVVMAATLGLDKKYGIKITPTKE
ASWAGVRDKLVNGELDAAHVLYGLIYGVQLGIGGPKKDMAVLMNLNHNGQAITLSSKL
AEKGVKDGASLKALMMKEKRDYTFAQTFPTGTHAMWLYYWLAANGINPMQDAKAITVP
PPQMVANMRVGNMDGFCVGEPWGARAIADKIGFTAETTQAIWKSHPEKTLGTTAEFVQ
KYPNTARAMVAAVLEASKFIDASASNRRKTAETIAAKSYVNTDMDIILDRMLGRYTNG
LGKTWDDPDAMKFYQDGSANYPYLSDGMWFLTQHKRWGLLKEHPDYLAVARQVNRIDV
YKQAAAAAQVPLPKSDMRSAKLIDGVVWDGKDPKAYADGFKIKA"
misc_feature complement(369139..370125)
/gene="nrtA"
/locus_tag="CNE_1c03760"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
systems, periplasmic components [Inorganic ion transport
and metabolism]; Region: TauA; COG0715"
/db_xref="CDD:31059"
misc_feature complement(369340..370089)
/gene="nrtA"
/locus_tag="CNE_1c03760"
/note="NMT1-like family; Region: NMT1_2; pfam13379"
/db_xref="CDD:205558"
gene complement(370638..371285)
/locus_tag="CNE_1c03770"
/db_xref="GeneID:10916768"
CDS complement(370638..371285)
/locus_tag="CNE_1c03770"
/codon_start=1
/transl_table=11
/product="response regulator"
/protein_id="YP_004684224.1"
/db_xref="GI:339324531"
/db_xref="GeneID:10916768"
/translation="MTRRNPPPSPPPAAPAPPTAGGRVLRILLVRDPHDADPLNVEII
RGGLVSAGFTEIQIVDADLRLPDVITATQPDMLIIASESAARDTIEHVCVSTQHAPRP
IVLFTDNDDSQRIKAALTAGITAYIVDGLRAERVKTVLDVAYARFELDQQLRAELDAT
RLKLAERKVVERAKGLLMQARGLSEDEAYKRLRSMAMERGLKLVDAAQRVIDVMG"
misc_feature complement(370641..371225)
/locus_tag="CNE_1c03770"
/note="Response regulator with putative antiterminator
output domain [Signal transduction mechanisms]; Region:
AmiR; COG3707"
/db_xref="CDD:33502"
misc_feature complement(370653..370820)
/locus_tag="CNE_1c03770"
/note="ANTAR domain; Region: ANTAR; pfam03861"
/db_xref="CDD:202788"
gene 371541..372242
/locus_tag="CNE_1c03780"
/db_xref="GeneID:10916769"
CDS 371541..372242
/locus_tag="CNE_1c03780"
/EC_number="3.7.1.2"
/codon_start=1
/transl_table=11
/product="fumarylacetoacetat hydroxylase"
/protein_id="YP_004684225.1"
/db_xref="GI:339324532"
/db_xref="GeneID:10916769"
/translation="MTEFVFAPPAPVGVPVRGSNASFPVRRVYCVGRNYAAHAREMGS
DPDREPPFFFCKPSDAVSYVADGTEGAFPYPPGTSNCHYEVELVVAIGKGGRDIPVDQ
AAGHVFGYAVGLDMTRRDLQNESKKTGRPWETGKAFDQSAPIGPIVPVSAIGHPEKGA
VTLAVNGVEKQRGDLSDLIWSVPEMVSYLSKLFELQPGDLIFSGTPEGVGPVVKGDVM
QCHVGGVGDLTIKVV"
misc_feature <371607..372239
/locus_tag="CNE_1c03780"
/note="2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway) [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: MhpD; COG0179"
/db_xref="CDD:30528"
misc_feature 371619..372239
/locus_tag="CNE_1c03780"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; pfam01557"
/db_xref="CDD:201859"
gene 372247..372894
/gene="maiA1"
/locus_tag="CNE_1c03790"
/db_xref="GeneID:10916770"
CDS 372247..372894
/gene="maiA1"
/locus_tag="CNE_1c03790"
/EC_number="5.2.1.2"
/codon_start=1
/transl_table=11
/product="maleylacetoacetate isomerase MaiA"
/protein_id="YP_004684226.1"
/db_xref="GI:339324533"
/db_xref="GeneID:10916770"
/translation="MLKLYSYFRSSASFRVRIALELKGLSYDYVPVHLLKEGGQQLKP
EFRAVNPDGLVPAFVDGEHVLQQSLAIVEYLDEIHPEPKLLPGTALDRAYVRGLAQEI
ACEIHPLNNLRVLKYLKHTVGVTDEVKDAWYHHWIELGFASLQTNLERGGKAGRFCFG
DTPTLADICLVPQVFNAQRFNIDLARYPAIARIYETCMELPAFQKAQPKSQPDAE"
misc_feature 372250..372474
/gene="maiA1"
/locus_tag="CNE_1c03790"
/note="GST_N family, Class Zeta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens;
Region: GST_N_Zeta; cd03042"
/db_xref="CDD:48591"
misc_feature 372253..372891
/gene="maiA1"
/locus_tag="CNE_1c03790"
/note="maleylacetoacetate isomerase; Region: maiA;
TIGR01262"
/db_xref="CDD:162274"
misc_feature order(372268..372270,372286..372291,372295..372297,
372331..372333,372451..372453,372463..372465)
/gene="maiA1"
/locus_tag="CNE_1c03790"
/note="C-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:48591"
misc_feature order(372274..372276,372280..372282,372289..372291,
372367..372369,372406..372411,372445..372450)
/gene="maiA1"
/locus_tag="CNE_1c03790"
/note="GSH binding site (G-site) [chemical binding]; other
site"
/db_xref="CDD:48591"
misc_feature order(372406..372408,372442..372447,372451..372456,
372463..372465)
/gene="maiA1"
/locus_tag="CNE_1c03790"
/note="putative dimer interface [polypeptide binding];
other site"
/db_xref="CDD:48591"
misc_feature 372511..372879
/gene="maiA1"
/locus_tag="CNE_1c03790"
/note="C-terminal, alpha helical domain of Class Zeta
Glutathione S-transferases; Region: GST_C_Zeta; cd03191"
/db_xref="CDD:198300"
misc_feature order(372511..372516,372520..372528,372532..372537,
372544..372549,372553..372561,372568..372573,
372583..372588,372595..372600,372637..372642,
372649..372654,372685..372687)
/gene="maiA1"
/locus_tag="CNE_1c03790"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:198300"
misc_feature order(372532..372534,372544..372546,372580..372582,
372748..372750,372757..372759,372772..372774,
372781..372783)
/gene="maiA1"
/locus_tag="CNE_1c03790"
/note="N-terminal domain interface [polypeptide binding];
other site"
/db_xref="CDD:198300"
misc_feature order(372565..372567,372574..372576,372580..372582,
372772..372774,372781..372783)
/gene="maiA1"
/locus_tag="CNE_1c03790"
/note="maleylacetoacetate (MAA) substrate binding site (H
site) [chemical binding]; other site"
/db_xref="CDD:198300"
gene complement(372967..374127)
/gene="ftsY"
/locus_tag="CNE_1c03800"
/db_xref="GeneID:10916771"
CDS complement(372967..374127)
/gene="ftsY"
/locus_tag="CNE_1c03800"
/codon_start=1
/transl_table=11
/product="cell division protein FtsY"
/protein_id="YP_004684227.1"
/db_xref="GI:339324534"
/db_xref="GeneID:10916771"
/translation="MFSFWKKRKAEPAPVEAPAPAPAPVEVPAPVPAPAPTPAPVPAP
APAPVPAQVPPPAPAPVAAPVPVPAPAPAEALELVPPPAQTAEAKLGWMHRLRTGLSK
TSRNIGTLFVGVKVDEALFEELETALLMADAGVEATEYLLGELRKRVKAERIETAEGV
KAALRELLTQLLRPLEKTMALGREQPMVMMIAGVNGAGKTTSIGKLCKHFQRYDQKVL
LAAGDTFRAAAREQLTIWGERNNVTVVAQESGDPAAVIFDAVNAAKARGIDIVMADTA
GRLPTQLHLMEELKKVKRVISKAMPSAPHEVLLVIDANTGQNALQQTRAFDDALGLTG
LIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFKADEFADALLG"
misc_feature complement(372970..373869)
/gene="ftsY"
/locus_tag="CNE_1c03800"
/note="signal recognition particle-docking protein FtsY;
Provisional; Region: PRK10416"
/db_xref="CDD:182441"
misc_feature complement(373036..373566)
/gene="ftsY"
/locus_tag="CNE_1c03800"
/note="The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria and
the endoplasmic reticulum in eukaryotes. SRP recognizes
N-terminal sighnal sequences of newly synthesized
polypeptides at the ribosome. The...; Region: SRP;
cd03115"
/db_xref="CDD:48379"
misc_feature complement(373528..373551)
/gene="ftsY"
/locus_tag="CNE_1c03800"
/note="P loop; other site"
/db_xref="CDD:48379"
misc_feature complement(order(373102..373107,373114..373116,
373297..373299,373459..373461))
/gene="ftsY"
/locus_tag="CNE_1c03800"
/note="GTP binding site [chemical binding]; other site"
/db_xref="CDD:48379"
gene 374345..375892
/locus_tag="CNE_1c03810"
/db_xref="GeneID:10916772"
CDS 374345..375892
/locus_tag="CNE_1c03810"
/EC_number="3.4.-.-"
/codon_start=1
/transl_table=11
/product="Zn-dependent peptidase, M16B subfamily"
/protein_id="YP_004684228.1"
/db_xref="GI:339324535"
/db_xref="GeneID:10916772"
/translation="MNHCAVLTAAGAQGTKACVQTRIQRLSQPSNPLPARAARLARRV
IPTLLLALLPWSMPAGAQEAVPSPRPGTQTALAGATAQGTTEYRLSNGLRLIVKEDHR
APTVAHQIWYRVGGIDEVSGTTGVAHMLEHMMFKGTPKVGVGEFSKQVAALGGRENAM
TNRDFTMYYQQIGKQYLPRMMELEADRMANLIITKDEFEREMKVVMEERRLRTDDSAR
GTVYEQLLATVYTAAAYRHPVIGWMDDLVNMRVDDVKEWYRHWYVPNNAMVIVTGDVK
AEEVRALAERYYGKVKPRTLPLRKDQEEPAQKGIKRIWVKAPAENQYMVMAYKVPRLR
DIEKDVDPYALEVLSAVLNGYDNARLTRELVREQRLADDVNVGYDSINRGESLFVLDG
TPATGHNTDEIERALRAEVQRIAKEGVSPEELKRVKAQVVAGQIYKRDSVFGQGMEIG
VSEISDISWRQIDRMLDKIKAVTPAQVQAVAAKYFNDDNLTVATLVPQPIDPNKPKPQ
APSGLRH"
misc_feature 374600..375853
/locus_tag="CNE_1c03810"
/note="Predicted Zn-dependent peptidases [General function
prediction only]; Region: PqqL; COG0612"
/db_xref="CDD:30957"
misc_feature 374624..375067
/locus_tag="CNE_1c03810"
/note="Insulinase (Peptidase family M16); Region:
Peptidase_M16; pfam00675"
/db_xref="CDD:201385"
misc_feature 375086..375637
/locus_tag="CNE_1c03810"
/note="Peptidase M16 inactive domain; Region:
Peptidase_M16_C; pfam05193"
/db_xref="CDD:203199"
gene 375902..377284
/locus_tag="CNE_1c03820"
/db_xref="GeneID:10916773"
CDS 375902..377284
/locus_tag="CNE_1c03820"
/EC_number="3.4.-.-"
/codon_start=1
/transl_table=11
/product="Zn-dependent peptidase"
/protein_id="YP_004684229.1"
/db_xref="GI:339324536"
/db_xref="GeneID:10916773"
/translation="MTQYVTTPQRALRKLAGAALGAVVLLAAQLAQAAIPIEHWTAST
GAKVFFVHSPSIPMLDVNIDFDAGSRYDPPGKAGLATLTAALLDKGAAALEGQPARDE
AKIADGFADTGAAFGGAAGGDRGGIGLRTLTEQPELDQSVALAAQLIKAPTYPDAVVG
REKQRLITAIREADAKPGVIADKALAKAMYPDHPYGVAATPDSVASITRDDIVTFWRD
NYGAQRAVVTLIGAVDRKQAEAIAEQLTRGLPPGSAAPAMPQVRLNIAPSEQRMPHPA
QQSSVAIGQPAIARGDPDYFALLVGNYVLGGGGFSSRLTDEVREKRGLTYGVDSYFAP
SKQPGPFGISLQTKKAQTDEALALVRQVLARFVAEGPTEKELRAAKDNLINGFPLRID
NNRKLLTNVANIGWYGLPLDYLDTWTAQIGKVTREQVRAAFQRHVRPDNMATVIVGGP
VAAPATAARQ"
misc_feature 376004..377227
/locus_tag="CNE_1c03820"
/note="Predicted Zn-dependent peptidases [General function
prediction only]; Region: PqqL; COG0612"
/db_xref="CDD:30957"
misc_feature 376517..377050
/locus_tag="CNE_1c03820"
/note="Peptidase M16 inactive domain; Region:
Peptidase_M16_C; pfam05193"
/db_xref="CDD:203199"
gene 377367..378071
/gene="rsmD"
/locus_tag="CNE_1c03830"
/db_xref="GeneID:10916774"
CDS 377367..378071
/gene="rsmD"
/locus_tag="CNE_1c03830"
/EC_number="2.1.1.171"
/codon_start=1
/transl_table=11
/product="ribosomal RNA small subunit methyltransferase D"
/protein_id="YP_004684230.1"
/db_xref="GI:339324537"
/db_xref="GeneID:10916774"
/translation="MNSRSRLPTPATGGRPASPAAASGGRSPVSAAPRQAPRQAPRQE
PSQVRIIGGRWKRTLLPVPDAQGLRPTPDRVRETLFNWLGQDLSGLECLDLFAGSGAL
GFEAASRGAAAVTLVESNARVAKQLRDNQYRLDAAQVRVMQGDAFAIAAQLPDASFDV
VFLDPPFAEDWIGPALEHAARLSRPGGAVYVETDHALTGADAPVPASLEIVRHARAGA
VHFHLLQHRVPGNGAA"
misc_feature 377628..378053
/gene="rsmD"
/locus_tag="CNE_1c03830"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature 377643..377954
/gene="rsmD"
/locus_tag="CNE_1c03830"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(377649..377669,377718..377723,377796..377804,
377856..377858)
/gene="rsmD"
/locus_tag="CNE_1c03830"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 378312..378797
/gene="coaD"
/locus_tag="CNE_1c03840"
/db_xref="GeneID:10916775"
CDS 378312..378797
/gene="coaD"
/locus_tag="CNE_1c03840"
/EC_number="2.7.7.3"
/codon_start=1
/transl_table=11
/product="phosphopantetheine adenylyltransferase CoaD"
/protein_id="YP_004684231.1"
/db_xref="GI:339324538"
/db_xref="GeneID:10916775"
/translation="MVIAVYPGTFDPMTRGHEDLVRRASNIFDELVVGVAHSPNKRPF
FSLEERIGIAREVLGHYPNVRVEGFSGLLKDFVRNNNARVIVRGLRAVSDFEYEFQMA
GMNRYLLPDVETMFLTPSDQYQFISGTFVREIAVLGGDVSKFVFPSVERWLQEKIGKP
E"
misc_feature 378312..378788
/gene="coaD"
/locus_tag="CNE_1c03840"
/note="phosphopantetheine adenylyltransferase;
Provisional; Region: coaD; PRK00168"
/db_xref="CDD:178911"
misc_feature 378318..378776
/gene="coaD"
/locus_tag="CNE_1c03840"
/note="Phosphopantetheine adenylyltransferase; Region:
PPAT; cd02163"
/db_xref="CDD:173914"
misc_feature order(378327..378341,378357..378362,378369..378371,
378417..378419,378432..378434,378522..378530,
378570..378575,378579..378581,378600..378605,
378612..378614,378624..378626,378666..378668,
378678..378680,378687..378689)
/gene="coaD"
/locus_tag="CNE_1c03840"
/note="active site"
/db_xref="CDD:173914"
misc_feature 378351..378362
/gene="coaD"
/locus_tag="CNE_1c03840"
/note="(T/H)XGH motif; other site"
/db_xref="CDD:173914"
gene 378866..379126
/gene="fdx1"
/locus_tag="CNE_1c03850"
/db_xref="GeneID:10916776"
CDS 378866..379126
/gene="fdx1"
/locus_tag="CNE_1c03850"
/codon_start=1
/transl_table=11
/product="ferredoxin"
/protein_id="YP_004684232.1"
/db_xref="GI:339324539"
/db_xref="GeneID:10916776"
/translation="MALMITDDCINCDVCEPECPNEAISMGPEIYEIDPNKCTECVGH
FDEPQCQQVCPVACIPKDPNRVETHEVLMQRYRLLTAAKHAA"
misc_feature 378890..379033
/gene="fdx1"
/locus_tag="CNE_1c03850"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:205099"
gene complement(379228..381081)
/gene="rfbB1"
/locus_tag="CNE_1c03860"
/db_xref="GeneID:10916777"
CDS complement(379228..381081)
/gene="rfbB1"
/locus_tag="CNE_1c03860"
/EC_number="4.2.1.46"
/codon_start=1
/transl_table=11
/product="dTDP-D-glucose 4,6-dehydratase RfbB"
/protein_id="YP_004684233.1"
/db_xref="GI:339324540"
/db_xref="GeneID:10916777"
/translation="MSYLTDEARAASRAAKPDVEVPGQMLEDIVAANPARRRVLRGGL
GLSLASAFGSGLLAACGGDADPAPAPAPAPAPAPAPAPAAVAPSYDVTFEPIAKSTAD
TVVVPNGYSVDVLFSAGDPVEAGATGYAGAFQSSAETERQAGGNHDGMHYFALPGVDP
QKGGLLAINHELPDYNILFPTAYNAATASAEQKRIALSAVGISVIEVELAVSGKWQVK
RDSIYNKRYTGNTLYRVGGPAASVVGSTVVGMLNNCSSGYTPWGTYLTCEESTDNYID
PTQAENGYGWVVEIDPYGTLGAPAKRTAMGRFDHENVAFLTDASNNVAFYMGDDGTPG
CIYKFIPSKAFDPNNRAANANLLDSGTLYVARFNADGSGQWIELTQGKNGLTVGASDP
GNWTQSAVSPAPSTVDFTSQADVLINTKSAARVAGGTLMDRPEWITAAPDKTLYCTLT
NNSGRQQTDAANPRKNNLHGHIVKWNEAGNSPLATTFTWSILLQAGDPSLATDNLKGN
INGDTFSSPDGLRVDPKGRLWVQTDSSTSATYTGTFGNNSMYYISPTGQSRRFLAGPT
GCEITGIAYTPDLTTCFINIQHPTGKWPDAAKPPRSSTIVVRRSDGKPMGA"
misc_feature complement(379315..380805)
/gene="rfbB1"
/locus_tag="CNE_1c03860"
/note="Bacterial protein of unknown function (DUF839);
Region: DUF839; pfam05787"
/db_xref="CDD:114509"
gene complement(381277..381873)
/gene="pth1"
/locus_tag="CNE_1c03870"
/db_xref="GeneID:10916778"
CDS complement(381277..381873)
/gene="pth1"
/locus_tag="CNE_1c03870"
/EC_number="3.1.1.29"
/codon_start=1
/transl_table=11
/product="peptidyl-tRNA hydrolase Pth"
/protein_id="YP_004684234.1"
/db_xref="GI:339324541"
/db_xref="GeneID:10916778"
/translation="MIKLIVGLGNPGAEYEATRHNAGFWLVDQLARMGGATMRVEGRF
HGLAARARLWDQDIWLLKPSTFMNRSGLAVVSLARFYKVLPDEIVVAHDEMDLPAGAA
KLKRGGGAGGHNGLKDISAHLSTQDYWRLRLGVGHPRNAPGGAGAGREDVVNFVLKPP
RREEQEAIDAAIDRCIDPLGLLARGDAERAMAQLHTTR"
misc_feature complement(381343..381864)
/gene="pth1"
/locus_tag="CNE_1c03870"
/note="Peptidyl-tRNA hydrolase (PTH) is a monomeric
protein that cleaves the ester bond linking the nascent
peptide and tRNA when peptidyl-tRNA is released
prematurely from the ribosome. This ensures the recycling
of peptidyl-tRNAs into tRNAs produced through...; Region:
PTH; cd00462"
/db_xref="CDD:73208"
misc_feature complement(order(381535..381537,381595..381597,
381673..381678,381814..381816,381844..381846))
/gene="pth1"
/locus_tag="CNE_1c03870"
/note="putative active site [active]"
/db_xref="CDD:73208"
misc_feature complement(381814..381816)
/gene="pth1"
/locus_tag="CNE_1c03870"
/note="catalytic residue [active]"
/db_xref="CDD:73208"
gene complement(382025..382642)
/gene="rplY"
/locus_tag="CNE_1c03880"
/db_xref="GeneID:10916779"
CDS complement(382025..382642)
/gene="rplY"
/locus_tag="CNE_1c03880"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L25"
/protein_id="YP_004684235.1"
/db_xref="GI:339324542"
/db_xref="GeneID:10916779"
/translation="MKVVAFERSVQGTGASRRLRNSGKTPGIIYGGAAEPKMIELDHN
ALWHALKKEAFHSSILELEVAGKSEQALLRAFQMHPFKPLVLHVDFQRVSANDKIHVK
VPLHFMNQETAPGVKLGHGIVNHIVNDLEVSCLPADLPEFIEVDLAAAELNQTLHLSD
IKLPKGVTVITHGDDNPAIASISQPAGAVSEAAEGGEAAGETPAA"
misc_feature complement(382088..382642)
/gene="rplY"
/locus_tag="CNE_1c03880"
/note="50S ribosomal protein L25/general stress protein
Ctc; Reviewed; Region: PRK05618"
/db_xref="CDD:180166"
misc_feature complement(382367..382639)
/gene="rplY"
/locus_tag="CNE_1c03880"
/note="Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding
domain; Region: Ribosomal_L25_TL5_CTC; cd00495"
/db_xref="CDD:198379"
misc_feature complement(order(382370..382372,382376..382378,
382382..382384,382412..382414,382418..382423,
382535..382537,382547..382555,382583..382585,
382589..382597,382619..382621))
/gene="rplY"
/locus_tag="CNE_1c03880"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:198379"
misc_feature complement(order(382367..382372,382421..382423,
382433..382435,382469..382471,382547..382549))
/gene="rplY"
/locus_tag="CNE_1c03880"
/note="CTC domain interface [polypeptide binding]; other
site"
/db_xref="CDD:198379"
misc_feature complement(order(382370..382372,382394..382396,
382415..382417,382424..382429))
/gene="rplY"
/locus_tag="CNE_1c03880"
/note="L16 interface [polypeptide binding]; other site"
/db_xref="CDD:198379"
gene complement(382775..383728)
/gene="prs"
/locus_tag="CNE_1c03890"
/db_xref="GeneID:10916780"
CDS complement(382775..383728)
/gene="prs"
/locus_tag="CNE_1c03890"
/EC_number="2.7.6.1"
/codon_start=1
/transl_table=11
/product="ribose-phosphate pyrophosphokinase Prs"
/protein_id="YP_004684236.1"
/db_xref="GI:339324543"
/db_xref="GeneID:10916780"
/translation="MSSEGLMVFTGNANPKLAEAVVQHLGIPLGKALVGRFSDGEVQV
DIQENVRGKHVIVLQSTCAPTNDNLMELMVMVDALKRASARSITAAMPYFGYARQDRR
PRSARVAISAKVVANMLEVAGVERVLTMDLHADQIQGFFDIPVDNIYASPVLLGDLRE
KNYGDLLVVSPDVGGVVRARALAKELNCDLAIIDKRRPKANVAEVMNIIGEVDGRNCV
IMDDMIDTGGTLCKAAQVLKERGALKVFAYCTHPVLSGGAAARIADSALDEVVVCDTI
PLSEEAAKCTKIRQLSTAPLLAETFTRIVKGDSIMSLFAGS"
misc_feature complement(382784..383713)
/gene="prs"
/locus_tag="CNE_1c03890"
/note="ribose-phosphate pyrophosphokinase; Provisional;
Region: PRK01259"
/db_xref="CDD:179265"
misc_feature complement(383360..383713)
/gene="prs"
/locus_tag="CNE_1c03890"
/note="N-terminal domain of ribose phosphate
pyrophosphokinase; Region: Pribosyltran_N; pfam13793"
/db_xref="CDD:205966"
misc_feature complement(382904..383281)
/gene="prs"
/locus_tag="CNE_1c03890"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature complement(order(382970..382972,383042..383056,
383060..383068,383207..383209,383213..383215))
/gene="prs"
/locus_tag="CNE_1c03890"
/note="active site"
/db_xref="CDD:206754"
gene complement(383823..383899)
/gene="trnQ"
/locus_tag="CNE_1c03900"
/note="tRNA-Gln-TTG"
/db_xref="GeneID:10916781"
tRNA complement(383823..383899)
/gene="trnQ"
/locus_tag="CNE_1c03900"
/product="tRNA-Gln"
/codon_recognized="CAA"
/db_xref="GeneID:10916781"
gene complement(383959..384837)
/gene="ispE"
/locus_tag="CNE_1c03910"
/db_xref="GeneID:10916782"
CDS complement(383959..384837)
/gene="ispE"
/locus_tag="CNE_1c03910"
/EC_number="2.7.1.148"
/codon_start=1
/transl_table=11
/product="4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase"
/protein_id="YP_004684237.1"
/db_xref="GI:339324544"
/db_xref="GeneID:10916782"
/translation="MHRSQPLPPPELRDCPAPAKLNLFLHVTGRRADGYHTLQTVFQL
VDWCDTLHFRRRDDGLIARVTDVPGVPADTDLTVRAARALQAASGTAFGADIAIDKVL
PMGGGIGGGSSDAATTLLALNHLWGLGLARAELMRIGLALGADVPVFVLGQNAFAQGI
GEDLTPVELPDSWFVVIHPKQHVPTAEIFSDECLTRDTPLSIIAVFAARTNKFDFGRN
DLEPIATAKFGEVARALAWLKQHNQHARMTGSGACVFARFPDAATAQQVLERLPPEWD
GRCVRSLARHPLAALA"
misc_feature complement(383989..384816)
/gene="ispE"
/locus_tag="CNE_1c03910"
/note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional; Region: ipk; PRK00343"
/db_xref="CDD:178981"
misc_feature complement(384022..>384150)
/gene="ispE"
/locus_tag="CNE_1c03910"
/note="GHMP kinases C terminal; Region: GHMP_kinases_C;
pfam08544"
/db_xref="CDD:203975"
gene complement(384846..385439)
/gene="lolB"
/locus_tag="CNE_1c03920"
/db_xref="GeneID:10916783"
CDS complement(384846..385439)
/gene="lolB"
/locus_tag="CNE_1c03920"
/codon_start=1
/transl_table=11
/product="outer-membrane lipoprotein LolB"
/protein_id="YP_004684238.1"
/db_xref="GI:339324545"
/db_xref="GeneID:10916783"
/translation="MNRSRRLALLCLGAPLLLQACASVAPSRSFDGDQAAASQQYTGR
FSANYVRYGRDEGVQGSFRWEEQGRNVRLDLVSPLGQTLAVVTATPSGATLDLPNQPP
RNAPEVDTLMEEALGFALPVSGMRDWLHGRATKGAPARTTRDEQGRLATLAQNGWTVR
YVAWQEAAAQVPRRIDLARDAGSNPLSVRLVIDPQTP"
misc_feature complement(384849..>385340)
/gene="lolB"
/locus_tag="CNE_1c03920"
/note="outer membrane lipoprotein LolB; Provisional;
Region: lolB; PRK00022"
/db_xref="CDD:178799"
misc_feature complement(384861..385322)
/gene="lolB"
/locus_tag="CNE_1c03920"
/note="Outer membrane lipoprotein LolB; Region: LolB;
pfam03550"
/db_xref="CDD:112372"
gene complement(385532..387490)
/locus_tag="CNE_1c03930"
/db_xref="GeneID:10916784"
CDS complement(385532..387490)
/locus_tag="CNE_1c03930"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684239.1"
/db_xref="GI:339324546"
/db_xref="GeneID:10916784"
/translation="MSDLMPDLMPDSTLQATAGGLPIAFPGAVPRTARTAGALARFFQ
APRRHARALAASALLALAAGASHAAPPAGAMPLPSALQLAAAESERPAAASKPARSAL
PSLELTDDIVYMVLAAEISMQRGLVGPAYRTYMELARQTRDPRFAQRATEIAFNARIP
QQALDSARLWKEISPTSPAANQVLSTLLVLNGRWDDARPLLQQQLAAVPATHRGEAIL
QLQQQLSRTSDPAGAATLLQDLTKNDTKLPETQLALARAREVAGDEPGALAALDQALR
LRPDYEAAALMAAELRAEKQPDEAVAILKRFLDKSPDSVNGHITLARLYLLRNDMQSA
RQEFETLRKVAPGDPRVPLALGLTSLQAKNYGEAEQYLKEYLQLVEKQPTANPDIAYQ
YLAQIAEERKDYAGAIQWLDRIEDIRLAPAATAKRAQLLARMGKLDDAQALFGEMLTD
AEDIPDPGQRTQRVTAIRQAEVATLMESKAYDRARKLLNDRVTAEPDNADWIYELAML
DERQKRYDSMEKGLRKVIALQPQQKQGYNALGYSLADRNERLPEALKLLERASELGPD
DPYIMDSLAWVKFRMGDLRPAADLLRNAYSKAPEAEIGAHLGEVLWQLGEHDEARKTW
TEAVRTDPENETLVDTLRRYKVNMQLSK"
misc_feature complement(386357..386608)
/locus_tag="CNE_1c03930"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(order(386366..386368,386375..386377,
386387..386389,386423..386425,386468..386470,
386477..386479,386489..386491,386525..386527,
386570..386572,386579..386581,386591..386593))
/locus_tag="CNE_1c03930"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature complement(order(386405..386410,386417..386422,
386429..386434,386510..386515,386522..386527,
386531..386536))
/locus_tag="CNE_1c03930"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(386147..386434)
/locus_tag="CNE_1c03930"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(order(386189..386194,386201..386206,
386213..386218,386291..386296,386303..386308,
386312..386317,386417..386422,386429..386434))
/locus_tag="CNE_1c03930"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(order(386150..386152,386159..386161,
386171..386173,386207..386209,386249..386251,
386258..386260,386270..386272,386306..386308,
386366..386368,386375..386377,386387..386389,
386423..386425))
/locus_tag="CNE_1c03930"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature complement(385793..386071)
/locus_tag="CNE_1c03930"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(order(385853..385858,385865..385870,
385877..385882,385958..385963,385970..385975,
385979..385984,386069..386071))
/locus_tag="CNE_1c03930"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(order(385811..385813,385820..385822,
385832..385834,385871..385873,385916..385918,
385925..385927,385937..385939,385973..385975,
386018..386020,386027..386029,386039..386041))
/locus_tag="CNE_1c03930"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature complement(385796..386002)
/locus_tag="CNE_1c03930"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature complement(385592..385885)
/locus_tag="CNE_1c03930"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature complement(385697..385885)
/locus_tag="CNE_1c03930"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature complement(order(385649..385654,385661..385666,
385673..385678,385751..385756,385763..385768,
385772..385777,385865..385870,385877..385882))
/locus_tag="CNE_1c03930"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature complement(order(385610..385612,385619..385621,
385631..385633,385667..385669,385709..385711,
385718..385720,385730..385732,385766..385768,
385811..385813,385820..385822,385832..385834,
385871..385873))
/locus_tag="CNE_1c03930"
/note="TPR motif; other site"
/db_xref="CDD:29151"
gene 387644..388522
/gene="mutM"
/locus_tag="CNE_1c03940"
/db_xref="GeneID:10916785"
CDS 387644..388522
/gene="mutM"
/locus_tag="CNE_1c03940"
/EC_number="3.2.2.23"
/EC_number="4.2.99.18"
/codon_start=1
/transl_table=11
/product="formamidopyrimidine-DNA glycosylase MutM"
/protein_id="YP_004684240.1"
/db_xref="GI:339324547"
/db_xref="GeneID:10916785"
/translation="MPELPEVEVTRRGLLPHVVGRRIAAVTVRHRGLRWPVDPELEMR
LAQRVVRRIERRGKYLLLECVSEAAGESAGWLLVHLGMTGTLRVLPDAPPPGAHDHLD
LLLAPAPGAALGTQPGTIVLRFRDPRRFGAILWSTLPEAELPSHPLLRTLGIEPFDPA
FDGAWLHRHTRGRSAAIKTVLLAGGIVVGVGNIYASESLFRAGIRPTTPAGRLSRARC
DRLAQAVRETLAQAIERGGSTLRDFVGSDGASGYFQLDCLVYDRAGQPCRVCATPVRQ
IVQGQRSTFYCPNCQH"
misc_feature 387644..388519
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="formamidopyrimidine/5-formyluracil/
5-hydroxymethyluracil DNA glycosylase; Validated; Region:
PRK01103"
/db_xref="CDD:179222"
misc_feature 387647..388054
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="N-terminal domain of Escherichia coli Fpg1/MutM and
related bacterial DNA glycosylases; Region: EcFpg-like_N;
cd08966"
/db_xref="CDD:176800"
misc_feature order(387647..387652,387815..387817,387878..387880,
387884..387892,387932..387937,388022..388033)
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:176800"
misc_feature 387647..387649
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="catalytic residue [active]"
/db_xref="CDD:176800"
misc_feature order(387650..387661,387665..387670,387677..387679,
387806..387817,387890..387892)
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="H2TH interface [polypeptide binding]; other site"
/db_xref="CDD:176800"
misc_feature order(387650..387652,387815..387817)
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="putative catalytic residues [active]"
/db_xref="CDD:176800"
misc_feature 387878..387880
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="turnover-facilitating residue; other site"
/db_xref="CDD:176800"
misc_feature order(387887..387889,388025..388027,388031..388033)
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="intercalation triad [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature 387890..387892
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="8OG recognition residue [nucleotide binding]; other
site"
/db_xref="CDD:176800"
misc_feature order(387935..387937,388028..388030)
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="putative reading head residues; other site"
/db_xref="CDD:176800"
misc_feature 388097..388375
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="Formamidopyrimidine-DNA glycosylase H2TH domain;
Region: H2TH; pfam06831"
/db_xref="CDD:115485"
misc_feature 388433..388519
/gene="mutM"
/locus_tag="CNE_1c03940"
/note="Zinc finger found in FPG and IleRS; Region:
zf-FPG_IleRS; pfam06827"
/db_xref="CDD:203527"
gene 388805..390757
/locus_tag="CNE_1c03950"
/db_xref="GeneID:10916786"
CDS 388805..390757
/locus_tag="CNE_1c03950"
/EC_number="3.6.1.-"
/codon_start=1
/transl_table=11
/product="GTPase"
/protein_id="YP_004684241.1"
/db_xref="GI:339324548"
/db_xref="GeneID:10916786"
/translation="MTTLAHQFEQYGAWRTGVLQSLAEFQSWLQQHDLYDAQADDRVQ
RIQSVLRSDRLKVAFIAEFSRGKSELINAIFFADYGRRILPSSAGRTTMCPTELRYDE
AEPPCIRLLPIETRLQEASTADFLEAGTSASHWHSVPLDPSSPEGMLAAFQHVVQTVR
VPPAQAEALGLYHENDPDAAYAVDAEGMVEISRWRHAVINFPHPLLRQGLVILDTPGL
NAIGTEPELTLRLIPDAHVVVFVLAADAGVTKSDLELWRSHVGAGHRRGCLAVLNKID
GLWDPLREPGEIAQEIARQVSTTGQVLGIEQSRVYPVSAQKGLVAKVTHDDELLARSG
LPEFEHVLSDQLIPRRREIVSDQAHRLVQDMARAAQQLLQTRRRDIVEQLFELRGLRG
KNHAMVKHMLMRVQGEKEEFEQSISKFQALRLVFGRHSADIIKSLQLRDVRLTMRSAR
EQMKERFFSRGLREDMDALFAQLTRLVTDADNKISQLHQLIESMYRRFNAEHGFTLPA
PMQFTAERYVAELEETLRLVHAHFGTVSMLTRSRPQLVQSAFSTMASRVLENFRDLNR
DIEVWLKSVMTPLEAQVREHQKQLRRRVDSIERIHEATDTLESRIAELEEVLNGLDER
SGRIEGYAQRLLRPTAAADSASLAVA"
misc_feature 388967..>389104
/locus_tag="CNE_1c03950"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 388973..389629
/locus_tag="CNE_1c03950"
/note="Dynamin family; Region: Dynamin_N; pfam00350"
/db_xref="CDD:201172"
misc_feature 388985..389008
/locus_tag="CNE_1c03950"
/note="G1 box; other site"
/db_xref="CDD:206648"
misc_feature 388991..389011
/locus_tag="CNE_1c03950"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206648"
misc_feature 389078..389080
/locus_tag="CNE_1c03950"
/note="G2 box; other site"
/db_xref="CDD:206648"
misc_feature 389090..389098
/locus_tag="CNE_1c03950"
/note="Switch I region; other site"
/db_xref="CDD:206648"
misc_feature <389420..389842
/locus_tag="CNE_1c03950"
/note="Dynamin-like protein including dynamins,
mitofusins, and guanylate-binding proteins; Region: DLP_2;
cd09912"
/db_xref="CDD:206739"
misc_feature 389444..389455
/locus_tag="CNE_1c03950"
/note="G3 box; other site"
/db_xref="CDD:206739"
misc_feature order(389450..389455,389510..389515)
/locus_tag="CNE_1c03950"
/note="Switch II region; other site"
/db_xref="CDD:206739"
misc_feature order(389453..389455,389621..389626,389630..389632,
389744..389752)
/locus_tag="CNE_1c03950"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206739"
misc_feature 389621..389632
/locus_tag="CNE_1c03950"
/note="G4 box; other site"
/db_xref="CDD:206739"
misc_feature 389744..389752
/locus_tag="CNE_1c03950"
/note="G5 box; other site"
/db_xref="CDD:206739"
gene 390857..392035
/gene="mutY"
/locus_tag="CNE_1c03960"
/db_xref="GeneID:10916787"
CDS 390857..392035
/gene="mutY"
/locus_tag="CNE_1c03960"
/EC_number="3.2.2.-"
/codon_start=1
/transl_table=11
/product="A/G-specific adenine glycosylase"
/protein_id="YP_004684242.1"
/db_xref="GI:339324549"
/db_xref="GeneID:10916787"
/translation="MPRKPAPRAVPAIPDDIRVPPDFGARVVDWQRQHGRHDLPWQNT
RDPYRIWLSEIMLQQTQVSAVIDYFQRFVSQLPTVQALAAAPADQVMALWAGLGYYSR
ARNLHRCAMQVVSEHGGRFPTDPALLATLPGIGRSTAAAIAAFSAGVRSPILDGNVKR
VFARCFGIHGHPGERVVETRMWQLAELALPAAGPRQAEDMIAYTQGLMDLGATVCSRG
KPACLADAGACPLSADCVARRDGLTGVLPTPKPRAAIPERSTVMLLVRRQREVLLRLR
PGSGIWGGLWSLPEMPVDSVPFDAEVAEAAALDYARAFGKPARAALTGELTHVFTHFR
LLIRAIRVDVSADGASLMAQDSAAEAAQRWISLDDLDAVGTPAPVRRLLEDQARGGLF
"
misc_feature 390893..392008
/gene="mutY"
/locus_tag="CNE_1c03960"
/note="A/G-specific DNA glycosylase [DNA replication,
recombination, and repair]; Region: MutY; COG1194"
/db_xref="CDD:31387"
misc_feature 390998..391489
/gene="mutY"
/locus_tag="CNE_1c03960"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature order(391031..391039,391046..391048,391160..391162)
/gene="mutY"
/locus_tag="CNE_1c03960"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature 391247..391270
/gene="mutY"
/locus_tag="CNE_1c03960"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature order(391277..391279,391466..391468,391478..391480)
/gene="mutY"
/locus_tag="CNE_1c03960"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature 391319..391321
/gene="mutY"
/locus_tag="CNE_1c03960"
/note="active site"
/db_xref="CDD:28938"
misc_feature 391685..392008
/gene="mutY"
/locus_tag="CNE_1c03960"
/note="DNA glycosylase (MutY in bacteria and hMYH in
humans) is responsible for repairing misread A*oxoG
residues to C*G by removing the inappropriately paired
adenine base from the DNA backbone. It belongs to the
Nudix hydrolase superfamily and is important...; Region:
DNA_Glycosylase_C; cd03431"
/db_xref="CDD:72889"
misc_feature order(391694..391702,391838..391840,391847..391852)
/gene="mutY"
/locus_tag="CNE_1c03960"
/note="DNA binding and oxoG recognition site [nucleotide
binding]"
/db_xref="CDD:72889"
gene complement(392059..392718)
/locus_tag="CNE_1c03970"
/db_xref="GeneID:10916788"
CDS complement(392059..392718)
/locus_tag="CNE_1c03970"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684243.1"
/db_xref="GI:339324550"
/db_xref="GeneID:10916788"
/translation="MSSTDLYRPTGSEVPPRTLDNLPLFPLHTVLFPGGRLPLRVFEA
RYVDMVRNCLRDNTPFGVCLIESGEEVARPDQPTVPELVGCLAEIVDCNMEQLGVLLI
RARGRERFHIVSHDTRDDGLLVARAEVLPPDIIDCKLELLGECLDALRRIVTRLHAEH
PDRLPFDEPYLWDDPSWVANRLCELLPVPLKAKQMLMALPDAGMRIEIVHRYMRQNHM
L"
misc_feature complement(392074..392658)
/locus_tag="CNE_1c03970"
/note="ATP-dependent protease La (LON) domain; Region:
LON; pfam02190"
/db_xref="CDD:202145"
gene complement(392810..393694)
/locus_tag="CNE_1c03980"
/db_xref="GeneID:10916789"
CDS complement(392810..393694)
/locus_tag="CNE_1c03980"
/EC_number="2.7.-.-"
/codon_start=1
/transl_table=11
/product="P-loop-containing kinase"
/protein_id="YP_004684244.1"
/db_xref="GI:339324551"
/db_xref="GeneID:10916789"
/translation="MRIILITGISGSGKSVALNVLEDAGYYCVDNLPAQFIPELTRYL
DSQGYTHLGVATDIRSRESLDQLPDTVRALAAEHQVEVVFLTASTDALVQRYSETRRR
HPLSVRTDGMPGPGVEPAFNDTALMEAIEMERALLSPLAEAAHRIDTSNVRTNTLRSW
IKELIRDDSQRLTLLFESFGFKHGVPSDADMVFDVRSLPNPYYDLALRPLTGRDTPVI
DFLQAQPMVLAMAEDIRAYVEKWLPSFIADNRSYLTVAIGCTGGQHRSVYITERLANY
FRAHGNVLVRHRELAPAG"
misc_feature complement(392822..393694)
/locus_tag="CNE_1c03980"
/note="Predicted P-loop-containing kinase [General
function prediction only]; Region: COG1660"
/db_xref="CDD:31846"
misc_feature complement(392822..393694)
/locus_tag="CNE_1c03980"
/note="glmZ(sRNA)-inactivating NTPase; Provisional;
Region: PRK05416"
/db_xref="CDD:180064"
gene complement(393812..394204)
/locus_tag="CNE_1c03990"
/db_xref="GeneID:10916790"
CDS complement(393812..394204)
/locus_tag="CNE_1c03990"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684245.1"
/db_xref="GI:339324552"
/db_xref="GeneID:10916790"
/translation="MKKLIAMCALVTPMIAASAFAQTTATPATPATPAKPAATAPATP
AMPATPATPATPDKPAANAQQDKMKACNTQAAGKKGDERKAFMKECLSKGASKTQQEK
MASCSKSGKGKKGDEYKAYMKECLSKAA"
misc_feature complement(393929..394015)
/locus_tag="CNE_1c03990"
/note="psiF repeat; Region: PsiF_repeat; pfam07769"
/db_xref="CDD:203759"
gene complement(394367..395338)
/gene="hprK"
/locus_tag="CNE_1c04000"
/db_xref="GeneID:10916791"
CDS complement(394367..395338)
/gene="hprK"
/locus_tag="CNE_1c04000"
/EC_number="2.7.11.-"
/EC_number="2.7.4.-"
/codon_start=1
/transl_table=11
/product="HPr kinase/phosphorylase 4"
/protein_id="YP_004684246.1"
/db_xref="GI:339324553"
/db_xref="GeneID:10916791"
/translation="MELTGVTSQSIFDDNAADIKLSWVAGLEGADRAFDVEFAREATS
AADLVGHLNLIHPNRIQVLGKPEITYYQRLDDETRKRQMGELILLEPPFLVIADGMEP
PPDLELRCTRSSTPLFTTPVSSAAVIDHLRLYLSRISAPRVTMHGVFLDILGMGVLIM
GESGLGKSELGLELISRGHGLVADDAVDFVRLGPDFIEGRCPPLLQNLLEVRGLGLLD
IKTIFGETAVRRKMKIKLVVQLVRRNDGEFERLPLDSQYLDVLGLPIHMVKIQVAAGR
NLAVLVEAAVRNTILRLRGIDTLRDFMDRQRAAMQADAVSRGQGRLL"
misc_feature complement(394406..395329)
/gene="hprK"
/locus_tag="CNE_1c04000"
/note="HPr kinase/phosphorylase; Provisional; Region:
PRK05428"
/db_xref="CDD:180075"
misc_feature complement(394931..395287)
/gene="hprK"
/locus_tag="CNE_1c04000"
/note="DRTGG domain; Region: DRTGG; cl12147"
/db_xref="CDD:209465"
misc_feature complement(394475..394918)
/gene="hprK"
/locus_tag="CNE_1c04000"
/note="HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates the
utilization of carbon sources by gram-positive bacteria.
It catalyzes both the ATP-dependent...; Region: HprK_C;
cd01918"
/db_xref="CDD:29833"
misc_feature complement(order(394490..394492,394499..394501,
394532..394534,394583..394591,394676..394678,
394691..394699,394709..394711,394727..394729,
394775..394777,394781..394786,394811..394813,
394823..394825,394838..394840,394847..394852,
394901..394903,394907..394909))
/gene="hprK"
/locus_tag="CNE_1c04000"
/note="Hpr binding site; other site"
/db_xref="CDD:29833"
misc_feature complement(order(394703..394705,394709..394711,
394784..394789,394835..394843,394847..394849,
394901..394903))
/gene="hprK"
/locus_tag="CNE_1c04000"
/note="active site"
/db_xref="CDD:29833"
misc_feature complement(order(394478..394480,394484..394489,
394535..394537,394670..394678,394685..394693,
394697..394699,394715..394717,394727..394729,
394799..394801,394808..394813,394823..394825,
394829..394831))
/gene="hprK"
/locus_tag="CNE_1c04000"
/note="homohexamer subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:29833"
gene complement(395419..395874)
/locus_tag="CNE_1c04010"
/db_xref="GeneID:10916792"
CDS complement(395419..395874)
/locus_tag="CNE_1c04010"
/EC_number="2.7.1.69"
/codon_start=1
/transl_table=11
/product="phosphotransferase system
mannitol/fructose-specific IIA protein"
/protein_id="YP_004684247.1"
/db_xref="GI:339324554"
/db_xref="GeneID:10916792"
/translation="MNRLAKLLPPGNITLDVSVTSKKRVFEQAGLLFENNHGVARAIV
TDNLFARESLGSTGLGAGVAIPHGRIKGLKQPLAAFMRLAEPIPFESPDGKPVSLLIF
LLVPEQATQQHLEILSEIAQLLSDRDMREGLATLPTPDAVHQLLIAWHP"
misc_feature complement(395437..395853)
/locus_tag="CNE_1c04010"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:29266"
misc_feature complement(order(395674..395676,395722..395724))
/locus_tag="CNE_1c04010"
/note="active site"
/db_xref="CDD:29266"
misc_feature complement(395674..395676)
/locus_tag="CNE_1c04010"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29266"
gene complement(396330..396680)
/locus_tag="CNE_1c04020"
/db_xref="GeneID:10916793"
CDS complement(396330..396680)
/locus_tag="CNE_1c04020"
/codon_start=1
/transl_table=11
/product="sigma(54) modulation protein"
/protein_id="YP_004684248.1"
/db_xref="GI:339324555"
/db_xref="GeneID:10916793"
/translation="MNFKISGHHLDITPPLREYVETKLERIVRHFDQVIGVSVLLSVD
NHKEKDRRQYAEINLHLKGKDIFVEAHHEDLYAAIDALVDKLDRQVIRYKDRVQGHDR
EAVKYQMAAAQMQQ"
misc_feature complement(396393..396677)
/locus_tag="CNE_1c04020"
/note="RaiA ('ribosome-associated inhibitor A', also known
as Protein Y (PY), YfiA, and SpotY, is a stress-response
protein that binds the ribosomal subunit interface and
arrests translation by interfering with aminoacyl-tRNA
binding to the ribosomal A site; Region: RaiA; cd00552"
/db_xref="CDD:29642"
misc_feature complement(order(396393..396395,396405..396410,
396450..396452,396459..396461,396465..396467,
396474..396476,396480..396482,396489..396500,
396507..396509,396549..396551,396561..396563,
396573..396578,396594..396596,396603..396605,
396657..396659,396663..396665,396669..396671))
/locus_tag="CNE_1c04020"
/note="30S subunit binding site; other site"
/db_xref="CDD:29642"
gene complement(396729..398210)
/gene="rpoN"
/locus_tag="CNE_1c04030"
/db_xref="GeneID:10916794"
CDS complement(396729..398210)
/gene="rpoN"
/locus_tag="CNE_1c04030"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma-54 factor RpoN"
/protein_id="YP_004684249.1"
/db_xref="GI:339324556"
/db_xref="GeneID:10916794"
/translation="MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTEN
PLLERENDWIESPLRVAADGSVNLQSAPAPAPAEPQGNGEARADGAGDDDSYGDSGNG
DDYGSGDWSLDDFARRPQGDEDEKTPMQLREAEPTLREYLMEQLTPLKISARDKGLAI
FLIESLDDDGYLSASLEEICTELPEELEFEIDEVHAILTLLQSFDPPGVGARNAAECL
ALQLRRLTHPQRELALNIVSNHLELLAVRDYTRLKKALQVDEVALKSAHELIRSLAPY
PGHAYSRPEADFVVPDVFVRKGGGGWIAQLNPDVMPRLRINDMYAQILRGAKGESGTA
GLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKNFFSHGEIAMRPLVLREIADTLG
LHESTISRVTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEDP
RNPLSDSRIAELLGEQGFVVARRTVAKYREALKIPAVNLRKSL"
misc_feature complement(396732..398210)
/gene="rpoN"
/locus_tag="CNE_1c04030"
/note="RNA polymerase factor sigma-54; Reviewed; Region:
PRK05932"
/db_xref="CDD:180314"
misc_feature complement(398061..398204)
/gene="rpoN"
/locus_tag="CNE_1c04030"
/note="Sigma-54 factor, Activator interacting domain
(AID); Region: Sigma54_AID; pfam00309"
/db_xref="CDD:201144"
misc_feature complement(397248..397847)
/gene="rpoN"
/locus_tag="CNE_1c04030"
/note="Sigma-54 factor, core binding domain; Region:
Sigma54_CBD; pfam04963"
/db_xref="CDD:147239"
misc_feature complement(396735..397214)
/gene="rpoN"
/locus_tag="CNE_1c04030"
/note="Sigma-54, DNA binding domain; Region: Sigma54_DBD;
pfam04552"
/db_xref="CDD:113327"
gene complement(398346..399146)
/locus_tag="CNE_1c04040"
/db_xref="GeneID:10916795"
CDS complement(398346..399146)
/locus_tag="CNE_1c04040"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_004684250.1"
/db_xref="GI:339324557"
/db_xref="GeneID:10916795"
/translation="MTDTATIADKPSVEASTVLPGGSTLVVRHLKKRYGSRTVVKDVS
LDVKSGEVVGLLGPNGAGKTTSFYMIVGLVALDEGDIVLDGDHISGLPIHERARMGLS
YLPQEASVFRKLNVEENIRAVLELQVSNGKPLPKTEIERRLDSLLDDLQIAHLRNNPA
LSLSGGERRRVEIARALASSPRFILLDEPFAGVDPIAVGEIQRIVSFLKARNIGVLIT
DHNVRETLGICDHAYIISEGTVLAAGQPEEIIANDAVRRVYLGENFRM"
misc_feature complement(398349..399080)
/locus_tag="CNE_1c04040"
/note="ABC-type (unclassified) transport system, ATPase
component [General function prediction only]; Region:
YhbG; COG1137"
/db_xref="CDD:31332"
misc_feature complement(398364..399074)
/locus_tag="CNE_1c04040"
/note="The ABC transporters belonging to the YhbG family
are similar to members of the Mj1267_LivG family, which is
involved in the transport of branched-chain amino acids.
The genes yhbG and yhbN are located in a single operon and
may function together in...; Region: ABC_YhbG; cd03218"
/db_xref="CDD:72977"
misc_feature complement(398955..398978)
/locus_tag="CNE_1c04040"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72977"
misc_feature complement(order(398487..398489,398583..398588,
398829..398831,398952..398960,398964..398969))
/locus_tag="CNE_1c04040"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72977"
misc_feature complement(398829..398840)
/locus_tag="CNE_1c04040"
/note="Q-loop/lid; other site"
/db_xref="CDD:72977"
misc_feature complement(398631..398660)
/locus_tag="CNE_1c04040"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72977"
misc_feature complement(398583..398600)
/locus_tag="CNE_1c04040"
/note="Walker B; other site"
/db_xref="CDD:72977"
misc_feature complement(398565..398576)
/locus_tag="CNE_1c04040"
/note="D-loop; other site"
/db_xref="CDD:72977"
misc_feature complement(398481..398501)
/locus_tag="CNE_1c04040"
/note="H-loop/switch region; other site"
/db_xref="CDD:72977"
gene complement(399204..399854)
/locus_tag="CNE_1c04050"
/db_xref="GeneID:10916796"
CDS complement(399204..399854)
/locus_tag="CNE_1c04050"
/codon_start=1
/transl_table=11
/product="OstA-like protein"
/protein_id="YP_004684251.1"
/db_xref="GI:339324558"
/db_xref="GeneID:10916796"
/translation="MTASLTTSSRRRTAPALLALAMAFGLLAQPALAERADRDKPMVL
EADNASYDDVKQIYTLTGNVVLTKGTMILKSDAAELRTDPEGYQFAVATAKPGKQAYI
RQKREGVDEYIDGWGDRIEYDGKQEYSKLIGNARMARLQGAKQVDEIRGAVLTYDSRK
EFYTAAGGGSGDAAAANPSGRVRAVLSPRQDQKAGATGNGGSPLDLKTAPAPANKP"
misc_feature complement(399258..399767)
/locus_tag="CNE_1c04050"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG1934"
/db_xref="CDD:32117"
misc_feature complement(399291..399758)
/locus_tag="CNE_1c04050"
/note="lipopolysaccharide transport periplasmic protein
LptA; Region: outer_YhbN_LptA; TIGR03002"
/db_xref="CDD:163098"
gene complement(399923..400552)
/locus_tag="CNE_1c04060"
/db_xref="GeneID:10916797"
CDS complement(399923..400552)
/locus_tag="CNE_1c04060"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684252.1"
/db_xref="GI:339324559"
/db_xref="GeneID:10916797"
/translation="MQALLASLSGIVMRLLPLLLMAFVAGSTFWLVQINSPKEDLAAQ
STKKHEPDYFMDRFSATELAPDGSTKIRFTGERMVHFEDDQTYEVTRPAMRAYEPDRP
PVTARADMGRMNAEGSVIDLYGNGFVMRQQGVDVSKDPQLTAASSYFQLLINDDIVKT
DKPVKLTRGPSVMTANGLIFNNVTREVQLLGNVRGTIITGPSPGRAPGS"
misc_feature complement(399962..400507)
/locus_tag="CNE_1c04060"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3117"
/db_xref="CDD:32931"
misc_feature complement(399962..400471)
/locus_tag="CNE_1c04060"
/note="Lipopolysaccharide-assembly, LptC-related; Region:
LptC; pfam06835"
/db_xref="CDD:203530"
gene complement(400596..401579)
/gene="kefB1"
/locus_tag="CNE_1c04070"
/db_xref="GeneID:10916798"
CDS complement(400596..401579)
/gene="kefB1"
/locus_tag="CNE_1c04070"
/codon_start=1
/transl_table=11
/product="glutathione-like potassium-efflux system protein
KefB"
/protein_id="YP_004684253.1"
/db_xref="GI:339324560"
/db_xref="GeneID:10916798"
/translation="MIANFDADRALRLARDTLQTEADAVSALSGRLNGDFARAVLLIL
QCTGRVVVSGIGKSGHIGRKVAATLASTGTPAFFVHPAEASHGDLGMVTRDDVLIAFS
NSGETGELLSIIPIVKRIGARLISVTGNPDSNLAKLADVHLDAAVEKEACPLNLAPTA
STTAALALGDALAVAVLDARGFGEEDFARSHPGGALGRKLLTHVRDVMRTGNAVPEVR
ENTPLAQALMEITRKGMAMTAVVDPDGHAIGVFTDGDLRRLLETPRDWKTVPIGEVMH
HNPHVVNENQLAVEAVQVMEANRINQLLVVDDDGRLTGALHIHDLTRAKVI"
misc_feature complement(400599..401540)
/gene="kefB1"
/locus_tag="CNE_1c04070"
/note="D-arabinose 5-phosphate isomerase; Provisional;
Region: PRK10892"
/db_xref="CDD:182814"
misc_feature complement(401124..401438)
/gene="kefB1"
/locus_tag="CNE_1c04070"
/note="KpsF-like protein. KpsF is an arabinose-5-phosphate
isomerase which contains SIS (Sugar ISomerase) domains.
SIS domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. KpsF catalyzes the
reversible reaction of ribulose...; Region: SIS_Kpsf;
cd05014"
/db_xref="CDD:88409"
misc_feature complement(order(401274..401276,401406..401408))
/gene="kefB1"
/locus_tag="CNE_1c04070"
/note="putative active site [active]"
/db_xref="CDD:88409"
misc_feature complement(400608..400949)
/gene="kefB1"
/locus_tag="CNE_1c04070"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with KpsF/GutQ domains in the API [A5P (D-arabinose
5-phosphate) isomerase] protein. These APIs catalyze the
conversion of the pentose pathway...; Region:
CBS_pair_KpsF_GutQ_assoc; cd04604"
/db_xref="CDD:73104"
gene 401721..403700
/gene="kdsD"
/locus_tag="CNE_1c04080"
/db_xref="GeneID:10916799"
CDS 401721..403700
/gene="kdsD"
/locus_tag="CNE_1c04080"
/EC_number="5.3.1.13"
/codon_start=1
/transl_table=11
/product="arabinose 5-phosphate isomerase KdsD"
/protein_id="YP_004684254.1"
/db_xref="GI:339324561"
/db_xref="GeneID:10916799"
/translation="MHSPLELTLVLLAAAVFGVVAFRMLQLPPMLGYLAVGILIGPHA
LGLASDTAQTKYLAEFGVVFLMFSIGLEFNLTKLRSMKRLVFGLGGSQVVLSMLAVVP
ASWAFNWLFPLSWQASVALGGALAMSSTAIVSKMLSERMELESEHGRNIISILLFQDL
AVVPLLIVIPALSRDPGDLMVALGLATVKIVVALGAIFFLGQRLMSRWFHVVAARRSQ
ELFMLNLLLVTLGMAALTERLGLSMALGAFMAGMLISETPYRHQVEEDIKPFRDVLLG
LFFVTIGMLLNIRVVLDHVWLVLALLVVPVLFKLVLIALLARVFGSRQGVAIRTGLGL
AQAGEFGFVLLNQIDGLNLVDPVLIQVILASMLLSMLAAPFLIQYSDAIVLRFTANEW
LMQSLNMTRIAAQSLQTEKHAIICGFGRSGQNLAHMLEREGINYVALDLDPDRVREAA
AAGDTVVYGDAGRREALIAAGIHRAAALIVTYANTPSALKVLHHVQELAPALPVIVRT
VDDSELDTLQKAGATEVVPEIIEGSLMLASHALVLLGVPMRRVVRGVQQARDARYSLL
RGYFHGRDDDEDMVERDSVRLHSVSLGPQSTAVGRRLGVLGLERIGVEVTAVRRRGIR
AFDPEPETVLEPGDIVVLRGPPEALEAAETRILNG"
misc_feature 401784..402851
/gene="kdsD"
/locus_tag="CNE_1c04080"
/note="Sodium/hydrogen exchanger family; Region:
Na_H_Exchanger; pfam00999"
/db_xref="CDD:201544"
misc_feature 401784..402581
/gene="kdsD"
/locus_tag="CNE_1c04080"
/note="transporter, monovalent cation:proton antiporter-2
(CPA2) family; Region: 2a37; TIGR00932"
/db_xref="CDD:162117"
misc_feature 402888..403496
/gene="kdsD"
/locus_tag="CNE_1c04080"
/note="Kef-type K+ transport systems, predicted
NAD-binding component [Inorganic ion transport and
metabolism]; Region: Kch; COG1226"
/db_xref="CDD:31419"
misc_feature 402960..403298
/gene="kdsD"
/locus_tag="CNE_1c04080"
/note="TrkA-N domain; Region: TrkA_N; pfam02254"
/db_xref="CDD:202177"
misc_feature 403479..403679
/gene="kdsD"
/locus_tag="CNE_1c04080"
/note="TrkA-C domain; Region: TrkA_C; pfam02080"
/db_xref="CDD:202105"
gene complement(403719..404093)
/locus_tag="CNE_1c04090"
/db_xref="GeneID:10916800"
CDS complement(403719..404093)
/locus_tag="CNE_1c04090"
/codon_start=1
/transl_table=11
/product="arylsulfate sulfotransferase-like protein"
/protein_id="YP_004684255.1"
/db_xref="GI:339324562"
/db_xref="GeneID:10916800"
/translation="MCEIFIRANPASYQSQSRSLRLHGVATSIRLESLFWEVLEELAR
RDDMTVNQLITRLHDELTEHRGSEAVAGNFSSFLRVCCLRYLMLQGEGRIPADASVPI
RSLDARAVLDNLPESWVEARPH"
misc_feature complement(403767..404093)
/locus_tag="CNE_1c04090"
/note="Uncharacterized protein related to arylsulfate
sulfotransferase involved in siderophore biosynthesis
[General function prediction only]; Region: COG4321"
/db_xref="CDD:34043"
gene complement(404196..404774)
/gene="thiJ"
/locus_tag="CNE_1c04100"
/db_xref="GeneID:10916801"
CDS complement(404196..404774)
/gene="thiJ"
/locus_tag="CNE_1c04100"
/codon_start=1
/transl_table=11
/product="intracellular protease/amidase/DJ-1/PfpI family"
/protein_id="YP_004684256.1"
/db_xref="GI:339324563"
/db_xref="GeneID:10916801"
/translation="MAKKILMLVGDYAEDYETMVPFQALQMVGHTVHAACPDKQAGDA
CATAIHDFEGDQTYTEKRGHNFTLNATFAGIDPASYDALVIPGGRAPEYLRLNARVLE
IVRHFAQADKPIAAVCHGAQLLAAAGVLEGKTCSAYPACAPEVKLAGGTYADIPVDQA
HTDGNLVTAPAWPAHPAWLAQFLAVLGTRIVH"
misc_feature complement(404214..404765)
/gene="thiJ"
/locus_tag="CNE_1c04100"
/note="intracellular protease, PfpI family; Region: PfpI;
TIGR01382"
/db_xref="CDD:162331"
misc_feature complement(404217..404765)
/gene="thiJ"
/locus_tag="CNE_1c04100"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain found in a subgroup of proteins similar to PfpI
from Pyrococcus furiosus; Region: GATase1_PfpI_1; cd03169"
/db_xref="CDD:153243"
misc_feature complement(404421..404423)
/gene="thiJ"
/locus_tag="CNE_1c04100"
/note="conserved cys residue [active]"
/db_xref="CDD:153243"
gene 404991..405563
/gene="apt"
/locus_tag="CNE_1c04110"
/db_xref="GeneID:10916802"
CDS 404991..405563
/gene="apt"
/locus_tag="CNE_1c04110"
/EC_number="2.4.2.7"
/codon_start=1
/transl_table=11
/product="adenine/guanine phosphoribosyltransferase Apt"
/protein_id="YP_004684257.1"
/db_xref="GI:339324564"
/db_xref="GeneID:10916802"
/translation="MADSIIQSPELGDVTGYLRERIRTVPDWPMPGVMFRDITPLLQN
PKTLRVLIDVFVHRYMDAQLDLVAGIDARGFILGAIVAYELNLGFVPIRKKGKLPFQT
VAEEYELEYGSATVEIHADACKAGDRVLLVDDLIATGGTMMAGRKLLERLGATVVEGA
AIVDLPELGGSKLLQDGGLPLFTVCKFEGH"
misc_feature 405183..405542
/gene="apt"
/locus_tag="CNE_1c04110"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(405201..405203,405207..405209,405387..405395,
405399..405413,405483..405485)
/gene="apt"
/locus_tag="CNE_1c04110"
/note="active site"
/db_xref="CDD:206754"
gene 405607..406218
/locus_tag="CNE_1c04120"
/db_xref="GeneID:10916803"
CDS 405607..406218
/locus_tag="CNE_1c04120"
/codon_start=1
/transl_table=11
/product="threonine efflux protein"
/protein_id="YP_004684258.1"
/db_xref="GI:339324565"
/db_xref="GeneID:10916803"
/translation="MPDLLLFLLTSIAVTVAPGPDNLQVLARGMAQGRRAGLVAALGF
SVGCLFHTVIAAVGLAAVLRSSPLAFQLIKYAGAAYLIWIGIQALRAKGGLAQGGDVD
AVPLGRVFRQSVLGNIMNPKVTLFFLVFLPQFVRADATHPGLQFLLLGVVFMLQTAVV
FSLFGLCAGWLGAWLRRRPATGRWLDRAAGAIFVGLGIKVALP"
misc_feature 405616..406212
/locus_tag="CNE_1c04120"
/note="Putative threonine efflux protein [Amino acid
transport and metabolism]; Region: RhtB; COG1280"
/db_xref="CDD:31471"
gene 406450..408129
/gene="nptA"
/locus_tag="CNE_1c04130"
/db_xref="GeneID:10916804"
CDS 406450..408129
/gene="nptA"
/locus_tag="CNE_1c04130"
/codon_start=1
/transl_table=11
/product="Na+/phosphate symporter NptA"
/protein_id="YP_004684259.1"
/db_xref="GI:339324566"
/db_xref="GeneID:10916804"
/translation="MGVLLHLLSGVALLVWGTNIVKVGILRVYGANLRHVLSTSVSNR
FTAFLAGLGVTGLVQSSNATAVIVSSFVGQGLIAVAPALAIMLGANVGTALMVQVFSL
DLSWLSPLLIFVGVICHLTWKGSKPGHVGRVLIGLGLITLALELISIATRPVVQAAGV
KVLFASLTGDSGLDMLVGAFLTILCYSSLAVVLFCGALASAGVVSIHVALALVLGANL
GSGISALLTTSGNNQPGKRVTLGNLLSRLLGCLVALPLLGQAEELLALLDHDPQRLIV
NFHLLFNVALAVLLLGATAPLARLCEKVLPGRNTGDSQVTPRHLDTAALTTPTLALAN
AAREVLRIGDRVEQMLDNMLRVLRTNDAKLADATCRIDNEVDDLYTAIKLYLTRISLE
ALDERDGQRWTEIISLTINLEHAGDIIERILLDTKDKKIAHNLMFSEAGMQEIAEMHA
RLVANLRLGLSVFLNGDLKSAQALMAEKANFRELERKYARTHLQRVAVQTAESIETSS
LHLDVISELKRLNSLFCATAYPVLEQAGVLNRSRMKEDDLPTVSTVQAAQH"
misc_feature 406495..408051
/gene="nptA"
/locus_tag="CNE_1c04130"
/note="Na+/phosphate symporter [Inorganic ion transport
and metabolism]; Region: NptA; COG1283"
/db_xref="CDD:31474"
misc_feature 406495..406899
/gene="nptA"
/locus_tag="CNE_1c04130"
/note="Na+/Pi-cotransporter; Region: Na_Pi_cotrans;
pfam02690"
/db_xref="CDD:202351"
misc_feature 407464..407715
/gene="nptA"
/locus_tag="CNE_1c04130"
/note="PhoU domain; Region: PhoU; pfam01895"
/db_xref="CDD:202032"
misc_feature 407782..408006
/gene="nptA"
/locus_tag="CNE_1c04130"
/note="PhoU domain; Region: PhoU; pfam01895"
/db_xref="CDD:202032"
gene complement(408139..408624)
/locus_tag="CNE_1c04140"
/db_xref="GeneID:10916805"
CDS complement(408139..408624)
/locus_tag="CNE_1c04140"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684260.1"
/db_xref="GI:339324567"
/db_xref="GeneID:10916805"
/translation="MELSVVSVTKPEATNFIFGQSHFIKTVEDLHEALAGTVPGILFG
LAFCEASGKRLVRWSGTDEDLIDLACENARAIGAGHTFLIFLGDGFFPVNVLAAVRAV
PEVCRIFCATANPTQVIIAETDVGRGVVGVIDGASPLGIETDADVAERKALLRKFGYK
L"
misc_feature complement(408142..408609)
/locus_tag="CNE_1c04140"
/note="Adenosine specific kinase; Region: Adenosine_kin;
pfam04008"
/db_xref="CDD:112807"
gene complement(408735..411599)
/gene="uvrA"
/locus_tag="CNE_1c04150"
/db_xref="GeneID:10916806"
CDS complement(408735..411599)
/gene="uvrA"
/locus_tag="CNE_1c04150"
/EC_number="3.6.1.-"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit A"
/protein_id="YP_004684261.1"
/db_xref="GI:339324568"
/db_xref="GeneID:10916806"
/translation="MEEIKIRGARTHNLKNINLDLPRNRLIVITGLSGSGKSSLAFDT
LYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVT
EIHDYLRLLYARAGTPYCPDHNLPLQAQSVSQMVDAALALPEDTKLMILAPVVADRKG
EHSDLFDSMQAQGFVRFRIRSGGGAAHEAEAKVYEVDALPKLKKTEKHTIEVVVDRVK
VRADIKQRLAESFETALRLADGRALALELDSGKEHMFSSKFACPICSYSLQELEPRLF
SFNNPMGACPSCDGLGQITFFDPKRVVAFPNLSLASGAIKGWDRRNQFYFQMLQGLAA
YYDFDTETPFEELPENVQQSVLHGSGEQEIPFTYINERGRTTVREHVFEGIIPNLERR
YRETDSVAVREELAKYQNNQPCPACHGTRLRTEARHVKLGEGEQARAIFEINGWPLRD
ALTYFLTLDMHGAKREIGDKIIKEISARLNFLNNVGLDYLSLERSADTLSGGEAQRIR
LASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDMIRAC
DYVVDIGPGAGVHGGMIVAEGTPRQIEESPASLTGQYLSGQRRIEVPKERAAPDDERL
LRIVNASGNNLRNVTAEVPVGLLTCITGVSGSGKSTLINDTLYHAVARHLYGSTPEPA
PHDRIEGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPSAKERGYDPG
RFSFNVKGGRCESCQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEVLYKGRNISE
VLDLTVEQAHEFFSAVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELS
KRDTGRTLYILDEPTTGLHFHDIELLLKVIHKLRDQGNTVVIIEHNLDVIKTADWLID
MGPEGGAGGGQVIARGTPEDVARSKASFTGKYLAPLLKRA"
misc_feature complement(408741..411599)
/gene="uvrA"
/locus_tag="CNE_1c04150"
/note="excinuclease ABC subunit A; Reviewed; Region: uvrA;
PRK00349"
/db_xref="CDD:178984"
misc_feature complement(<411252..411590)
/gene="uvrA"
/locus_tag="CNE_1c04150"
/note="The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_I; cd03270"
/db_xref="CDD:73029"
misc_feature complement(409839..>410177)
/gene="uvrA"
/locus_tag="CNE_1c04150"
/note="The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_I; cd03270"
/db_xref="CDD:73029"
misc_feature complement(408804..409727)
/gene="uvrA"
/locus_tag="CNE_1c04150"
/note="The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_II; cd03271"
/db_xref="CDD:73030"
gene 411966..413216
/locus_tag="CNE_1c04160"
/db_xref="GeneID:10916807"
CDS 411966..413216
/locus_tag="CNE_1c04160"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily MFS sugar family"
/protein_id="YP_004684262.1"
/db_xref="GI:339324569"
/db_xref="GeneID:10916807"
/translation="MPSIQSSSPGAGAADASQAPARERMTRAELRAAVSLASIFALRM
LGLFLILPVFAEFAHSLPDGHDAQRVGLAMGIYGLMQAFLHIPLGWLSDRIGRKPVMV
AGLLLFIAGGLVAAFSDTLSGIIAGRALQGMGAISAAITACIADLTRERHRTKAMAMV
GGSIGLTFALSLVIASPLLHSIGMSGIFGLMSVLGLVAIGVTLFLVPTPPPPHPVRLP
FRKVLLNADLARLNVGVLALHASQVAMFMVVPAMLADAGMPLDQHWKVYLPVVLVSFV
LMLGPMMAAERYGRVRPVLLGAVALMTAVQLLFAAVHGLWAIVGVLLLFFVAFNVLEA
MQPSLVSRYAAAARGAALGVYNTTQALGLFLGGAAGGWLLKHEGRSAVFVGCAVVLLL
WLIIAWSMKAPPARGQEAAPATPA"
misc_feature 412065..>412919
/locus_tag="CNE_1c04160"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature 412071..>412562
/locus_tag="CNE_1c04160"
/note="Major Facilitator Superfamily; Region: MFS_1;
pfam07690"
/db_xref="CDD:191813"
misc_feature order(412104..412106,412113..412121,412125..412130,
412185..412187,412194..412199,412206..412208,
412218..412223,412227..412232,412374..412379,
412386..412391,412398..412400,412434..412439,
412446..412451,412467..412469,412680..412682,
412689..412694,412701..412706,412713..412715,
412752..412754,412764..412766,412776..412778,
412785..412787,412797..412799)
/locus_tag="CNE_1c04160"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 413400..413948
/gene="ssb"
/locus_tag="CNE_1c04170"
/db_xref="GeneID:10916808"
CDS 413400..413948
/gene="ssb"
/locus_tag="CNE_1c04170"
/codon_start=1
/transl_table=11
/product="ssDNA-binding protein"
/protein_id="YP_004684263.1"
/db_xref="GI:339324570"
/db_xref="GeneID:10916808"
/translation="MASVNKVILVGNLGADPETRYLPSGDAVTNIRLATTDRYKDKQS
GEMKEATEWHRVSFFGKIAEIAGQYLRKGSSVYIEGRIRTRKWQDQSGQDKYSTEIVA
DQMQMLGSRQGGGGGGDEGGYGGGAGGGGYSREASGGGYGGGARGGQGGAQGGGQSGG
AARRPQQPASNGFEDMDDDIPF"
misc_feature 413403..>413723
/gene="ssb"
/locus_tag="CNE_1c04170"
/note="Single-stranded DNA-binding protein [DNA
replication, recombination, and repair]; Region: Ssb;
COG0629"
/db_xref="CDD:30974"
misc_feature 413418..413723
/gene="ssb"
/locus_tag="CNE_1c04170"
/note="SSB_OBF: A subfamily of OB folds similar to the OB
fold of ssDNA-binding protein (SSB). SSBs bind with high
affinity to ssDNA. They bind to and protect ssDNA
intermediates during DNA metabolic pathways. All bacterial
and eukaryotic SSBs studied to date...; Region: SSB_OBF;
cd04496"
/db_xref="CDD:72968"
misc_feature order(413418..413429,413502..413510,413553..413555,
413559..413561,413622..413624,413649..413651,
413682..413684,413691..413693)
/gene="ssb"
/locus_tag="CNE_1c04170"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:72968"
misc_feature order(413433..413441,413457..413459,413487..413489,
413508..413513,413547..413552,413556..413558,
413562..413564,413568..413570,413574..413576,
413613..413618,413640..413642,413646..413648,
413652..413657,413694..413696,413700..413702)
/gene="ssb"
/locus_tag="CNE_1c04170"
/note="ssDNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:72968"
misc_feature order(413622..413624,413628..413630,413634..413636,
413715..413717)
/gene="ssb"
/locus_tag="CNE_1c04170"
/note="tetramer (dimer of dimers) interface [polypeptide
binding]; other site"
/db_xref="CDD:72968"
gene 414160..415356
/gene="int"
/locus_tag="CNE_1c04180"
/db_xref="GeneID:10916809"
CDS 414160..415356
/gene="int"
/locus_tag="CNE_1c04180"
/codon_start=1
/transl_table=11
/product="tyrosine-based site-specific recombinase CMGI-7"
/protein_id="YP_004684264.1"
/db_xref="GI:339324571"
/db_xref="GeneID:10916809"
/translation="MPLFAPTVYSLTQLRGRNLAANTIEQSLRHIIVLLLFLEQRGID
IETRFQEGRLVDLAEIESLANACSLHLADIDAAEGQKAGAKPARMPSLERLRMLRSNA
GAKTVDAASAANRVRGIADYLSWLVKSHLLKLSASSSSFQALESTRQMVIQALLARAP
SHRSRNVVAAREGLPPETAARLLKVTAKNSPENPWTGEFIKLRNELLFRWLYSFGLRR
GELLNVKVSDISFQKETVTIVRRADAPEDPRKEQPTVKTRDRVLPIPSDLCRLTHDYV
LHGRRHLTGARKHEYLFVADKTGAPMSLSALNKCFAFLRTHIPDLPDDLSPHVLRHTW
NDNFSAAMDRMKTPEADEQKMRSFLMGWSETSGTAVNYTRRHVRKRANEVSLLLQSEM
TNKNDI"
misc_feature 414775..>415158
/gene="int"
/locus_tag="CNE_1c04180"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:211431"
misc_feature order(414808..414810,415141..415143,415150..415152)
/gene="int"
/locus_tag="CNE_1c04180"
/note="active site"
/db_xref="CDD:29495"
misc_feature order(414808..414810,415141..415143,415150..415152)
/gene="int"
/locus_tag="CNE_1c04180"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29495"
misc_feature order(414808..414813,415135..415143)
/gene="int"
/locus_tag="CNE_1c04180"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29495"
gene 415356..416888
/locus_tag="CNE_1c04190"
/db_xref="GeneID:10916810"
CDS 415356..416888
/locus_tag="CNE_1c04190"
/codon_start=1
/transl_table=11
/product="integrase/recombinase"
/protein_id="YP_004684265.1"
/db_xref="GI:339324572"
/db_xref="GeneID:10916810"
/translation="MTALPAIIEEASPIVRTRGGAWFDPNQVRWVIREGHGAASINFE
RLMGVATPMFVHGFRKTLIWYAENKSLRHLDNMFQRAEHLFKHLNEGRLEPLHEISEV
SLLNYHSSLGNQKWYLGSLAGFLKKWHALGYHGVTTPAITLLNELRLAGNIKGVAVLT
MDPHNGPFTDIELESIQAALNNAYACGVVAKDDYLLAWLFMLLGQRPSQYALLKVSDV
HAPKIKDGSRIHCLKVPRAKQRQAARLEFKERLLTPQIGELLYEYANEVEKSFEGKLE
DPREGPLFPADSTGLQPAGMEYHQEADSLARKLVRALTKLEVFSERTGDLIHITATRF
RRTLGTRAAREGHGELVIAELLDHTDTQNVGVYVQSTPEIVERIDKSVAMALAPLAQA
FAGIVIADESAAIRGKDPSSRIFDPRIERSCQPMGSCGSHGFCKFSAPIACYTCQSFQ
AWLDGPHEAVLNHLLAERERKLTTTDMRIATINDRTILAVAEVIRQCEAHRETMELAA
HG"
misc_feature 415923..416462
/locus_tag="CNE_1c04190"
/note="DNA breaking-rejoining enzymes,
intergrase/recombinases, C-terminal catalytic domain. The
tyrosine recombinase/integrase family share the same
catalytic domain containing six conserved active site
residues. The best-studied members of this diverse
family...; Region: INT_REC_C; cd01182"
/db_xref="CDD:29503"
misc_feature order(415971..415976,416067..416069,416346..416351,
416454..416456)
/locus_tag="CNE_1c04190"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29503"
misc_feature order(415971..415973,416067..416069,416349..416351,
416358..416360,416427..416429,416454..416456)
/locus_tag="CNE_1c04190"
/note="Int/Topo IB signature motif; other site"
/db_xref="CDD:29503"
misc_feature order(415971..415973,416349..416351,416358..416360,
416427..416429,416454..416456)
/locus_tag="CNE_1c04190"
/note="active site"
/db_xref="CDD:29503"
misc_feature order(415971..415973,416358..416360,416454..416456)
/locus_tag="CNE_1c04190"
/note="catalytic residues [active]"
/db_xref="CDD:29503"
gene 416881..418959
/locus_tag="CNE_1c04200"
/db_xref="GeneID:10916811"
CDS 416881..418959
/locus_tag="CNE_1c04200"
/codon_start=1
/transl_table=11
/product="integrase"
/protein_id="YP_004684266.1"
/db_xref="GI:339324573"
/db_xref="GeneID:10916811"
/translation="MADIVLFTPKSEWDASENLNDFVAMCREQLTVFGADLCFDENVW
DITDAIELKGRGNKRFRVVFSNLSTANDATVRPMAEPFLSFAKADFRYSFAMRPTKSP
DRRMVALRALEEALAENGNYPDPVRMTAETFNRAAQLVKERFSMSSAYRVGGQLELLS
KFLSDNHLVAVRIDWRNPLRRPTDTSRVGKEFDERRNKKLPSAAALEAIPKIFQTATE
PSIVFASAIAATLCSAPDRINEILLLPANCEVREKKGDGTEAYGLRWWSAKGAEPMVK
WVVPSMAEVVSEAIRRIRDLSANARKVAVWYEEHPNEAYLSEAAEHLRHQEWLSASEL
NLVLFGDETVPRQSGTQWCKLKKVTLIKRGRASYAKFADVEAALLELLPKGFPWLSKS
VGLKYRDALCIVRENELHFDANIQVGRIAAVTIDQIHVWLGGATEKWSIFSRSDFWEP
DGSAIKITSHQFRHYLNTLAQAGGMSQLDIAKWSGRRDIRQNAAYDHVSADELVLKIR
NALGDDRQMFGPLAELPKRIVIHRDEFARLKVPTAHTTEFGVCIHDYTMAPCQLHADC
LNCHEQVCIKGDEVRAARIRAELDTARESLAAAEQAQGDGYFGASRWVAHHRLGVERL
TQLCEILDDPKVPMGAVIQLSNIQTASRIEQAAEARAGLGHEEGSSDESVTPSQAMRN
LLTMMENSDA"
misc_feature 416881..418719
/locus_tag="CNE_1c04200"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4688"
/db_xref="CDD:34304"
misc_feature <418234..418386
/locus_tag="CNE_1c04200"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:211431"
gene 418952..419422
/locus_tag="CNE_1c04210"
/db_xref="GeneID:10916812"
CDS 418952..419422
/locus_tag="CNE_1c04210"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684267.1"
/db_xref="GI:339324574"
/db_xref="GeneID:10916812"
/translation="MPKQSKSRARNLGDEDLEAISRLLDGWDGKLSWELLIEAIETRL
KARYTRQALSQHARIKLAFQLTKERLTGQPRSKQQGSAGLGATEAQALLERYQRLEGE
NARLKAENERLLEQFVVWAYNASNRGLDARFLSQPLPRVDRDQTKLRPSRPSKL"
gene 419709..420785
/locus_tag="CNE_1c04220"
/db_xref="GeneID:10916813"
CDS 419709..420785
/locus_tag="CNE_1c04220"
/note="porin"
/codon_start=1
/transl_table=11
/product="outer membrane protein"
/protein_id="YP_004684268.1"
/db_xref="GI:339324575"
/db_xref="GeneID:10916813"
/translation="MKVGNTRRSHAMALTGVLAGAICGVAQQALAQSVSTSISVYGLI
DTMVRYSDNNRGDQSLAELSEGYFSGSRWGVRGNEALGAGWSALFNLESGFDLATGTS
LQGTAASNYGQVGTQGTGRLFGRQSYLGIEHLAWGKLTVGRQFTTAYDATFRFQPYGH
PNLDAVAILNGYTGPRQDNMAKYAGQWGAFSATAHYTFGEVPGDAAASSSRGLALAWI
TALIDVGALFQSTSALANEEKRTIWGIGGSSQLGRVKLALGYLDNRYHLSPTRNHVLT
GGATVQATPALALSLAAGYDRQTAASGHRLMLTSVAEYSLSRRTSVYAEADFNRISGS
YALPAFMGVRGNKFGGGVGLRHRL"
misc_feature 419814..420716
/locus_tag="CNE_1c04220"
/note="Porins form aqueous channels for the diffusion of
small hydrophillic molecules across the outer membrane.
Individual 16-strand anti-parallel beta-barrels form a
central pore, and trimerizes thru mainly hydrophobic
interactions at the interface. Trimers...; Region:
gram_neg_porins; cd00342"
/db_xref="CDD:30071"
misc_feature order(419814..419816,419820..419822,419838..419840,
419844..419852,419937..419951,419967..419969,
419973..419981,419985..419987,419991..420002,
420078..420083,420087..420101,420129..420137,
420234..420236,420240..420245,420654..420659,
420666..420668)
/locus_tag="CNE_1c04220"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:30071"
misc_feature order(419835..419837,419922..419924,420081..420083,
420174..420176,420234..420236)
/locus_tag="CNE_1c04220"
/note="eyelet of channel; other site"
/db_xref="CDD:30071"
gene 420801..421787
/gene="bugT2"
/locus_tag="CNE_1c04230"
/db_xref="GeneID:10916814"
CDS 420801..421787
/gene="bugT2"
/locus_tag="CNE_1c04230"
/codon_start=1
/transl_table=11
/product="extra-cytoplasmic solute receptor BugT"
/protein_id="YP_004684269.1"
/db_xref="GI:339324576"
/db_xref="GeneID:10916814"
/translation="MISRRQFLAAALAAPALPGMPARADSGATAWPRHPVRLVVTFPP
GGSSDIVARLLAPVLQEKLGQPFVTDNRPGAGSTIGAAAVAAAPNDGYTLLMSNSAAL
SISPFLLRRPAYDPVRSFTHVHYIGAVPTVFAVHPSVPARNLAELAAWIRAQRDPVPF
GSGGAASVAHIVGELFGQQAGLRLTHVPYKGAGPMRADLLGGQIPFAVDALPQNLPLL
QSGALRLLAVTSAQRVPQAPQLPTVAQAGYPGLVAENFVGVSAPANLPEDIVQRLHQQ
LQVILQQPALRGRLEAQGFVLAERRPDEFAAYVRQQAQAWGPVVAATGATLS"
misc_feature 420882..421772
/gene="bugT2"
/locus_tag="CNE_1c04230"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3181"
/db_xref="CDD:32994"
misc_feature 420951..421775
/gene="bugT2"
/locus_tag="CNE_1c04230"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene 421784..422719
/locus_tag="CNE_1c04240"
/db_xref="GeneID:10916815"
CDS 421784..422719
/locus_tag="CNE_1c04240"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_004684270.1"
/db_xref="GI:339324577"
/db_xref="GeneID:10916815"
/translation="MSARIQVVLFGPEGRGSFNEAGHVGAMRARNAGHDLAVTWIADP
DPQARAAALLALCETGPDLIVAHGGQGDYPVSVAAARHPARRFVVTQGSVLCANTASY
AVLQEQSAFLAGVLAAMDSRTGVVAHLSGEKVCPGLKGRAAFLHGVRSVVPGLPALTT
FCGNQHDPALAGGAVAAQARAGADIVFAMIDGGRDGAIAACRAAGIRQIGNVLDWTSR
HPDVFLASAVADSGLCVELAIGDFKRDRIAWGTIHSFGLEAPAAVRLALGSDVSTAAR
AAIDHWSQRLLDGGVAVAEGYDGPEFAVGDAPAVA"
misc_feature 421793..422578
/locus_tag="CNE_1c04240"
/note="Type 1 periplasmic binding fold superfamily;
Region: Periplasmic_Binding_Protein_Type_1; cl10011"
/db_xref="CDD:209116"
gene complement(422727..423899)
/gene="pleD"
/locus_tag="CNE_1c04250"
/db_xref="GeneID:10916816"
CDS complement(422727..423899)
/gene="pleD"
/locus_tag="CNE_1c04250"
/EC_number="2.7.7.65"
/codon_start=1
/transl_table=11
/product="response regulator PleD"
/protein_id="YP_004684271.1"
/db_xref="GI:339324578"
/db_xref="GeneID:10916816"
/translation="MLHDAGQFLALVNPAIAILLSLCFLLAWNHERTRHYLLQLGACY
LLYALAIALQIVWVPRNGGGNATVTGALYLGSAVLMLRGMLARIGARVDTCALVSLPL
ALFATLAWFDFVQPQLVARIYILNIGIALILLLGIAPLARLRTGSTADRVLFWVFLLF
ALHFLPRTVLTIAPATGQDAAAFTRSAYWLWLQVTLALLLLTLALALLAAAMQDVIDG
LRHERDTDPLTQLHTRRSLEALAAREIPPPQGKPLSVLLCDLDFFKFINDNYGHSAGD
AVLAQIGRIIAAGVRRRDIAARLGGEEFVVLLPDTPPDAALHLAERLRQTLESSEMDV
LPGMHSVTASFGVATLRPGEDLEALLMRVDNVLYAAKNKGRNCVEWEREAGMPVLA"
misc_feature complement(422763..423227)
/gene="pleD"
/locus_tag="CNE_1c04250"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature complement(order(422994..422996,423123..423125))
/gene="pleD"
/locus_tag="CNE_1c04250"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature complement(order(422991..423002,423006..423008,
423072..423074,423084..423086,423096..423101,
423108..423110))
/gene="pleD"
/locus_tag="CNE_1c04250"
/note="active site"
/db_xref="CDD:143635"
misc_feature complement(order(422934..422936,423018..423020))
/gene="pleD"
/locus_tag="CNE_1c04250"
/note="I-site; other site"
/db_xref="CDD:143635"
gene 424298..424642
/locus_tag="CNE_1c04260"
/db_xref="GeneID:10916817"
CDS 424298..424642
/locus_tag="CNE_1c04260"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684272.1"
/db_xref="GI:339324579"
/db_xref="GeneID:10916817"
/translation="MKTKKAMPALLLAASVLAAPFAMAQGGAKSKPKPMTDPMAASEP
AAQNSPYMQVQQWKKGDRLPTEFRDRQYVIDDYKQYNLPAPRKGTRWVGIGAEYYLVA
PNGVVQQVGSGS"
misc_feature 424475..424627
/locus_tag="CNE_1c04260"
/note="Domain of unknown function (DUF3315); Region:
DUF3315; pfam11776"
/db_xref="CDD:204740"
gene complement(424729..425022)
/locus_tag="CNE_1c04270"
/db_xref="GeneID:10916818"
CDS complement(424729..425022)
/locus_tag="CNE_1c04270"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684273.1"
/db_xref="GI:339324580"
/db_xref="GeneID:10916818"
/translation="MDYAGNPNSVFVEAIVRKSVLVLMALLLAGAPGLALAHNCPNEM
KAIDAKLSTRPALSPEDSAKVAKLRADGEAYHKAGKHDEAMKSLLEAKKILGI"
gene 425485..426555
/locus_tag="CNE_1c04280"
/db_xref="GeneID:10916819"
CDS 425485..426555
/locus_tag="CNE_1c04280"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684274.1"
/db_xref="GI:339324581"
/db_xref="GeneID:10916819"
/translation="MPLMRNRGASIVQHIDLKLAAIPLACLAILLAGCGGGGGDSAPA
NAAPSASVAGPAGANGKTILSGTNAPTADAGTDGDFYLNATTSTLYGPKAGGAWPAGV
SLVGPQGVAGAPGAVLLHGAADPTAADGGEGSFYLNTTTNTLFGPKTAEGWPAGVSVV
GLTGPVGPAGPAGSDGAAGAQGPQGEKGEKGDTGETGATGPQGQQGEAGGNGGAGATI
YTANFAVYNSPDGNGTYVMTGTGLDRQSIDPNFGAVMPVGCSGGLTLNASLAGAVPDD
EVKYTLAAYRVASGAALETIAPLAITDASACSLGATVRTCSAPATTTVAANDIVQVQV
SGNRNFKWGGALYVSLSCKSSS"
gene 426736..427236
/locus_tag="CNE_1c04290"
/db_xref="GeneID:10916820"
CDS 426736..427236
/locus_tag="CNE_1c04290"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684275.1"
/db_xref="GI:339324582"
/db_xref="GeneID:10916820"
/translation="METSAEHYSLALLCAAVLTVTVVGIHYEALRLLSAIHPRRWSGR
MNIGVLIVCIIVVHCLEALVFALGFWFADHVLGLGGLTAMGSAGVSGVHTQPGVLVYA
YFALETFTTQSLGDIVPVGASRLIASIEPLVGLILIGWSTSFTYVMMRRDWELERDEG
GGRRAP"
misc_feature <427042..427164
/locus_tag="CNE_1c04290"
/note="Ion channel; Region: Ion_trans_2; cl11596"
/db_xref="CDD:209363"
gene 427313..428773
/locus_tag="CNE_1c04300"
/db_xref="GeneID:10916821"
CDS 427313..428773
/locus_tag="CNE_1c04300"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684276.1"
/db_xref="GI:339324583"
/db_xref="GeneID:10916821"
/translation="MARLVMILLGVDYLRTRWRGLLRLGCLSVLLGGAMFVDALDNAI
YFPMTPFAVVLLLEGLATLVVARTGIGGQRTLRQVKGVSFCFAAVLILAGHHHGNFVL
SMIFGTLFLADGLLQIVSARVVRFRTWRLAVAVGMFEIALAIFFYQPYPTHYVGTVPY
CLALGLIFGGWNMLLLASRLRRLDHNPGMDEADAAPAAPASAVPATDAAAAADVPDMT
LWDGPPEPGEHALTVHVWTPVGSARGEARRQPLVDRYIAAVDRDGVISTGHAALESPE
GIYISLYPAEEIDRSPDEFTRILRATRENDVGGKFQPDYQTESRAWCPSTVQVRIRNY
DPERLGRFWSAYRQNTTYNLTDRNCSSTVSHALEGASARVWRQAKGWRPLWRLLTTPE
LWVAAQIRKRAKTMAWTPGLTLDYARALSMLADPRPSGWASMTRMALGQMRRQRRGWR
EAARTRADKEGSGAVAGGIDAANAENAGSVRQAAND"
misc_feature 427493..>427879
/locus_tag="CNE_1c04300"
/note="Short repeat of unknown function (DUF308); Region:
DUF308; cl15828"
/db_xref="CDD:210228"
gene 428821..429171
/locus_tag="CNE_1c04310"
/db_xref="GeneID:10916822"
CDS 428821..429171
/locus_tag="CNE_1c04310"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684277.1"
/db_xref="GI:339324584"
/db_xref="GeneID:10916822"
/translation="MPSQRTLIRIAAIAALAMACSAHAQRPDGDSAAAAAINEAVQQG
TTPYRPDPAATPGSIQSDECRALAAQIAEAPKREYRATQPAIETAQGRMIPELERDRP
KKSLQQAYREKCSQ"
gene 429482..430420
/gene="gltI1"
/locus_tag="CNE_1c04320"
/db_xref="GeneID:10916823"
CDS 429482..430420
/gene="gltI1"
/locus_tag="CNE_1c04320"
/codon_start=1
/transl_table=11
/product="glutamate/aspartate ABC transporter permease
GltI"
/protein_id="YP_004684278.1"
/db_xref="GI:339324585"
/db_xref="GeneID:10916823"
/translation="MKAAQVTCPRSSQRPLAEPLAAAVLALFAGTAGAADVAASPTLS
KVKSSGTIAIGHRTSSIPFSYYDANQKVIGFSQDICDRVVDAVKRETGVPGLQVRMVP
VTSQNRISLVQNGTVDLECGVTTNLKSRQQQVAFSTTFFVAGTRLLVKKGSPVRDFAD
LSGKAVVTNAGTTSERILRRLNDEKQANITVQSAKDYGESFLILQSGRVAAFMMDDVL
LSGARTLAPNPAEWAVVGTPQSFEAYAFMMRKDDPGFKQVVDGAITGLIRSGEINKLY
ARWFAAPVPPKHVNFELPMSEPLKKAYANPNDEAFD"
misc_feature 429632..430321
/gene="gltI1"
/locus_tag="CNE_1c04320"
/note="Bacterial periplasmic substrate-binding proteins;
Region: PBPb; smart00062"
/db_xref="CDD:197497"
misc_feature 429635..430321
/gene="gltI1"
/locus_tag="CNE_1c04320"
/note="Bacterial periplasmic transport systems use
membrane-bound complexes and substrate-bound,
membrane-associated, periplasmic binding proteins (PBPs)
to transport a wide variety of substrates, such as, amino
acids, peptides, sugars, vitamins and inorganic...;
Region: PBPb; cd00134"
/db_xref="CDD:29040"
misc_feature order(429659..429661,429794..429796,429869..429871,
429998..430000,430124..430126)
/gene="gltI1"
/locus_tag="CNE_1c04320"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:29040"
misc_feature order(430073..430075,430085..430087,430103..430105)
/gene="gltI1"
/locus_tag="CNE_1c04320"
/note="membrane-bound complex binding site; other site"
/db_xref="CDD:29040"
misc_feature order(430205..430207,430208..430216)
/gene="gltI1"
/locus_tag="CNE_1c04320"
/note="hinge residues; other site"
/db_xref="CDD:29040"
gene complement(430436..431350)
/locus_tag="CNE_1c04330"
/db_xref="GeneID:10916824"
CDS complement(430436..431350)
/locus_tag="CNE_1c04330"
/codon_start=1
/transl_table=11
/product="GlvR family transcriptional regulator"
/protein_id="YP_004684279.1"
/db_xref="GI:339324586"
/db_xref="GeneID:10916824"
/translation="MPMPPDSPTPSPQAPPQDLDALLALLRSNFPTLSTQFQGGARYL
LDHPQDVAVLSMRKIAASAGVQPATLVRLSQHLGFEGWQGLRELFVDALRGGSQPYAR
RARKVVRESSASRMLGEMLDAQHHNLDMIATSNEKTLQQAAELLSHAACVHVAGFRSC
FPIAFTFHYVYRLFRSTVHLIRADAGTLEMELRGLAPKDAVLVVSFAPYSQESIRVAA
AARECGCKVIALTDSTVAPIALAADCTLLFSVESPSFFPSVTAGVAMVEALVEQLLAR
KGKGAIRALEQAEGELHRTGAYVAAGRG"
misc_feature complement(430475..431272)
/locus_tag="CNE_1c04330"
/note="Transcriptional regulators [Transcription]; Region:
RpiR; COG1737"
/db_xref="CDD:31923"
misc_feature complement(431093..>431230)
/locus_tag="CNE_1c04330"
/note="Helix-turn-helix domain, rpiR family; Region:
HTH_6; pfam01418"
/db_xref="CDD:201784"
misc_feature complement(<430610..430942)
/locus_tag="CNE_1c04330"
/note="RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E. coli,
rpiR negatively regulates the expression of rpiB gene.
Both rpiB and rpiA are ribose phosphate...; Region:
SIS_RpiR; cd05013"
/db_xref="CDD:88408"
misc_feature complement(order(430736..430738,430871..430873))
/locus_tag="CNE_1c04330"
/note="putative active site [active]"
/db_xref="CDD:88408"
gene 431636..432157
/gene="pilE1"
/locus_tag="CNE_1c04340"
/db_xref="GeneID:10916825"
CDS 431636..432157
/gene="pilE1"
/locus_tag="CNE_1c04340"
/codon_start=1
/transl_table=11
/product="type IV pilus assembly protein PilE"
/protein_id="YP_004684280.1"
/db_xref="GI:339324587"
/db_xref="GeneID:10916825"
/translation="MGHRSPAVRHGGRVNSSFRVIGEVGATGNPCRGWRLRGARAAHG
FTLIEVMITVAIIAILAAVAIPNYSRHVVRSHRAAIESFMLEVSGAQERYLVDNRAYA
ANLGTLGMSVPAAQATRYDVAVTPNAALPPGYSIVATPKGSQVAGDADCGSLTLTSAG
AKSASGSGTDCWN"
misc_feature 431750..432091
/gene="pilE1"
/locus_tag="CNE_1c04340"
/note="Tfp pilus assembly protein PilE [Cell motility and
secretion / Intracellular trafficking and secretion];
Region: PilE; COG4968"
/db_xref="CDD:34575"
gene 432160..432654
/gene="fimT1"
/locus_tag="CNE_1c04350"
/db_xref="GeneID:10916826"
CDS 432160..432654
/gene="fimT1"
/locus_tag="CNE_1c04350"
/codon_start=1
/transl_table=11
/product="type IV pilus assembly protein FimT"
/protein_id="YP_004684281.1"
/db_xref="GI:339324588"
/db_xref="GeneID:10916826"
/translation="MRRATFPPSSPGRPTRRGFTLVELLCAMSVLAILAVAAAPSFSS
LIANQRVRGASLDLTSALLLARSEAVKRNATVTLAATGAAWTAGWAVTAGAETVRSFG
PYGGLTITPSAAGALALGNDGRLTGAAMTFEVAPNGDTAAASRVCVQVSETGRVASAT
GACS"
misc_feature 432217..>432378
/gene="fimT1"
/locus_tag="CNE_1c04350"
/note="Tfp pilus assembly protein FimT [Cell motility and
secretion / Intracellular trafficking and secretion];
Region: FimT; COG4970"
/db_xref="CDD:34577"
gene 432651..433274
/gene="pilV1"
/locus_tag="CNE_1c04360"
/db_xref="GeneID:10916827"
CDS 432651..433274
/gene="pilV1"
/locus_tag="CNE_1c04360"
/codon_start=1
/transl_table=11
/product="type IV pilus assembly protein PilV"
/protein_id="YP_004684282.1"
/db_xref="GI:339324589"
/db_xref="GeneID:10916827"
/translation="MKHRIPRLRPRMPGRRTQGGFLLIEVLVAVVILLVALLGTAGLV
ARSGQTEMESYQRVQALALLQDMVARLNANRQVASCYANGATGMQLGSAAAPPAACTQ
GTAAQKATADADLQAWNTALLGSAEKRPGASAADAAQAVGAMIGARGCIETVDAVNNI
YRITVAWQGLATTGAPALGCGKDQYGNDAYRRAVSTQIRVGTLGTVS"
misc_feature <432786..433196
/gene="pilV1"
/locus_tag="CNE_1c04360"
/note="Tfp pilus assembly protein PilV [Cell motility and
secretion / Intracellular trafficking and secretion];
Region: PilV; COG4967"
/db_xref="CDD:34574"
gene 433271..434314
/gene="pilW1"
/locus_tag="CNE_1c04370"
/db_xref="GeneID:10916828"
CDS 433271..434314
/gene="pilW1"
/locus_tag="CNE_1c04370"
/codon_start=1
/transl_table=11
/product="type IV pilus assembly protein PilW"
/protein_id="YP_004684283.1"
/db_xref="GI:339324590"
/db_xref="GeneID:10916828"
/translation="MSPLRLSARRLRRQRGISLVELMIGMTIGLVLLTALASLYYANS
LSRTEFVKSAEQVENGRYALEQIRREVELAGFFGAGSIARGATVAEPALCAADPAALG
FSAAGLTVPLALTGYGPGVAAACLPDLAATSEVLVVRRVSTTPVAAPTPGVPYLQVSA
CPQDTNSFVFDASAAAAFGLRTKACDPAQPAALRQAVVRVFYLAGCDRCSNGGDGIPT
LKMAELVGGAFQSRSVAQGVQDMHLQYGVDLDSNGSADCYVADPGANNAAACATVPGY
DWTNALANWRNVTTVRVNLLARTLKPSGGQSDNRTYDVGRAAASGPFNDGFKRHVYAQ
VARLVNVAGLREQ"
misc_feature 433316..434248
/gene="pilW1"
/locus_tag="CNE_1c04370"
/note="Tfp pilus assembly protein PilW [Cell motility and
secretion / Intracellular trafficking and secretion];
Region: PilW; COG4966"
/db_xref="CDD:34573"
gene 434311..434904
/locus_tag="CNE_1c04380"
/db_xref="GeneID:10916829"
CDS 434311..434904
/locus_tag="CNE_1c04380"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004684284.1"
/db_xref="GI:339324591"
/db_xref="GeneID:10916829"
/translation="MTSPRKEQAMIKQSGRQPQGRPLRRGQDGVTLVVTLVFMVLFLL
IAMAMVNSGLVNVKVAANQQHTAEARDVAQQAIEQVISNDFTKAPAAVAVPVDVSGDG
KADYVAQVAQPECVTSKPMKNVELDLSDADDVSCLIGSGVQNTGIVTAGNSGGNSLCN
ATQWDVAATVNDAANTGTVATVHQGVAVRMPTGSACP"
gene 434954..438196
/gene="pilY1"
/locus_tag="CNE_1c04390"
/db_xref="GeneID:10916830"
CDS 434954..438196
/gene="pilY1"
/locus_tag="CNE_1c04390"
/codon_start=1
/transl_table=11
/product="type IV pilus assembly protein PilY"
/protein_id="YP_004684285.1"
/db_xref="GI:339324592"
/db_xref="GeneID:10916830"
/translation="MTTNACRQRRLAAFAIALLTFAGVNRARAEDIDLFTGLQTNAGT
KPNVLLLLDNASTWNASTTIKGCDIPDVVSANNAGTDVGAIQCALYRAVNTLVTNPQL
AGNINMGLMMFGTSTNTGGIFRYPSAAPYTLPTMDATNGNAFLQYIKSIDRQRDNSNN
SQVGGGMQEAWAFFAGKKGLSGTQYTSPITNPCQKNFVIYIANAVNNGKPQDTGTDAK
DALVAAGANATQLTTLKLNPAANKYESNWGDEWARFMYQTDVNGNVENNQNIITYTIA
VTDDNNPDYVESTRSMGDNGGGKRYVVKLGDVQALVDALLQIFNEMQAVNNVFSSVSL
PVSVNGQGSYLNQIYIGMFRPDATAAPRWMGNLKQYKLGYDSSKQIVVLDANPSGPNQ
QSAISNAGTGFISPNAKSFWTAEPPLAFSGSSYSGSAVTGWPAKGFWVNSPSGAAGAL
DSADGAAGVTGGDGEIVEKGGAGEMLRAQIVTDQAARKLYTCPSGACTAKVLASFDTA
NTWLTNATGQTALNSSAADVKNLINWVRGRDVQALGESTVAGTEQQKGPGGSVTVRGS
VHGDVLHSRPVVINYGGTTGVVVFYGANDGVFHAVNGNQTTGINGVRPGGELWGFVPP
EFYGKLGRLYTNTPEVQLSGSPTGSGAKPRDYFFDGTTTVFQDLRDPANPRVVIYLTA
RRGGRLVYALDVTNPVAPEFLWKSDSNQIAELGQTWSQPRVIRVKGYTNPLVVMGAGY
DAAEDAEPSQGGGATGQGRGVIVFDALTGTVVRAWLADCTGLGATVCSVPAGLNRAIP
SDVAVVDRNGDGLIDKGYVGDMGGNVWRLDFETAAGTGPAAWTLGKFAALGGAQTSND
ARKFMYPPDVITTGAYDAVMIGSGDREHPLYTTSNAAGLAYNVTNRFYMLKDTALTGG
LPATWTPLTESSLFNATATVYADSGTGKGFYLTLGTGEKVVNAPLTVAGYTYFGTNTP
SVPKSGACYPDLGIARGYAVSFLTGKGLNDNRYVQFNNGGLPPSPVFGVVAVSDAQGN
TSNVPVLIGGGNQNGPGGGDNTSSLGAQKISPPGIGKRKRTYWYTQSDKK"
misc_feature 435029..438175
/gene="pilY1"
/locus_tag="CNE_1c04390"
/note="Tfp pilus assembly protein, tip-associated adhesin
PilY1 [Cell motility and secretion / Intracellular
trafficking and secretion]; Region: PilY1; COG3419"
/db_xref="CDD:33225"
misc_feature 436658..>437476
/gene="pilY1"
/locus_tag="CNE_1c04390"
/note="Neisseria PilC beta-propeller domain; Region:
Neisseria_PilC; pfam05567"
/db_xref="CDD:203278"
gene complement(438210..439700)
/gene="ttgC1"
/locus_tag="CNE_1c04400"
/db_xref="GeneID:10916831"
CDS complement(438210..439700)
/gene="ttgC1"
/locus_tag="CNE_1c04400"
/codon_start=1
/transl_table=11
/product="efflux pump outer membrane protein TtgC"
/protein_id="YP_004684286.1"
/db_xref="GI:339324593"
/db_xref="GeneID:10916831"
/translation="MSRLTPVFVAAALLCGCAVGPDFRAPAPPDDAGYVPGPQPVATV
AADAADAGGQSHAQTLAAGADVPAQWWALFRSPALDATIRGALDASPTLAQARARLRE
AQENLAARTGATRWPAVDAKLNTTRQQVDFQSLGITAIPSPGPFTLYGATVQVSYVLD
LFGGQRRELEGLQAAVDYQRYELEAARLALTANVATAAIREAGLRAQLADTAAVAAAQ
QRQLGITEERLRAGGVARVDVQRQRAELAQTQALVPALQRQLDATRHQLAVYTGQTPA
SATLPEFRLDELQLPDTLPVSLPATLARRRPDIRAAEALLHQASANIGVATANLYPQI
TLSANGGTQATAARDLFSSLNVWSLAAGLVQPVFRGGELQARKRAAEAAYEQSLAAYR
QAVLQGLQNVADSLRALEADAAALRERADSARQARDTLAVVSEQYRLGGVSQLAVLDA
ERQSRQASLELAQARANRLADSAALLQALGGGWWKEEGGAVAAAPR"
misc_feature complement(438255..439538)
/gene="ttgC1"
/locus_tag="CNE_1c04400"
/note="efflux transporter, outer membrane factor (OMF)
lipoprotein, NodT family; Region: outer_NodT; TIGR01845"
/db_xref="CDD:162557"
gene complement(439712..440875)
/gene="ybhS"
/locus_tag="CNE_1c04410"
/db_xref="GeneID:10916832"
CDS complement(439712..440875)
/gene="ybhS"
/locus_tag="CNE_1c04410"
/codon_start=1
/transl_table=11
/product="inner membrane transport permease YbhS"
/protein_id="YP_004684287.1"
/db_xref="GI:339324594"
/db_xref="GeneID:10916832"
/translation="MTAAARKPAAQQRFSLQRWWSIVLKEFLQLRRDRVTFGMIIGLP
IMQLLLFGFAINTDPRHLPTAVIAADQSEFTRSFIASMEQSTYFKLVGTLPDEQAGRE
ALMKGEVQFVLTIPPDFTRRLLRGERPALLVEADATDPSATGQAIAALPQLPYRVATH
DLKGPLAPLAGGKPPFDVQVQRLYNPEGITQYNIIPGLMGVILTMTMVMMTGLAMTRE
RERGTMENLLATPVRPLEVMTGKIVPYIFIGLIQSTIVLLAARWIFSVPFVGSVLAVY
LAALLFIAANLTVGITLSSLAQNQLQAMQLTFFYFLPNILLSGFMFPFAGMPGWAQAI
GNILPMTYFHRMVRGILLKGNGWVELWPNVWPMALFIVVVMAIAVRFYRRTLD"
misc_feature complement(439724..440818)
/gene="ybhS"
/locus_tag="CNE_1c04410"
/note="ABC-type Na+ efflux pump, permease component
[Energy production and conversion / Inorganic ion
transport and metabolism]; Region: NatB; COG1668"
/db_xref="CDD:31854"
misc_feature complement(<440507..440803)
/gene="ybhS"
/locus_tag="CNE_1c04410"
/note="YhgE/Pip N-terminal domain; Region: pip_yhgE_Nterm;
TIGR03061"
/db_xref="CDD:132105"
misc_feature complement(439820..440326)
/gene="ybhS"
/locus_tag="CNE_1c04410"
/note="ABC-2 type transporter; Region: ABC2_membrane;
pfam01061"
/db_xref="CDD:201578"
gene complement(440872..441840)
/locus_tag="CNE_1c04420"
/db_xref="GeneID:10916833"
CDS complement(440872..441840)
/locus_tag="CNE_1c04420"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_004684288.1"
/db_xref="GI:339324595"
/db_xref="GeneID:10916833"
/translation="MNTTINGGAAGLAIDVRGLNKHFGDKHVVNDLSMQVARGEIFGF
LGPNGSGKTTSIRMMCGLLTPDSGTGTCLGYDIRSESDEIKRRVGYMTQKFSYWDDLS
IRENLDFVARVYGMPNRREAVDRALEHLGLATRSAQLAGALSGGWKQRLALAACLLHE
PELLLLDEPTAGVDPKARRDFWEQLHQLAARGISVLVSTHYMDEAERCHKLAYIAYGK
LLAQGTADEVVASQNLSTWSVEGDDLAALSEQLQGAPGVEQTVAFGTALHVTGRDAQA
LADTLARLAGPGRRVEQTQTSLEDVFIHMMSGAEDNMAARKAREAS"
misc_feature complement(440917..441804)
/locus_tag="CNE_1c04420"
/note="ABC-type multidrug transport system, ATPase
component [Defense mechanisms]; Region: CcmA; COG1131"
/db_xref="CDD:31326"
misc_feature complement(441184..441801)
/locus_tag="CNE_1c04420"
/note="This family of ATP-binding proteins belongs to a
multisubunit transporter involved in drug resistance (BcrA
and DrrA), nodulation, lipid transport, and lantibiotic
immunity. In bacteria and archaea, these transporters
usually include an ATP-binding...; Region:
ABC_DR_subfamily_A; cd03230"
/db_xref="CDD:72989"
misc_feature complement(441682..441705)
/locus_tag="CNE_1c04420"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72989"
misc_feature complement(order(441241..441243,441337..441342,
441562..441564,441679..441687,441691..441696))
/locus_tag="CNE_1c04420"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72989"
misc_feature complement(441562..441573)
/locus_tag="CNE_1c04420"
/note="Q-loop/lid; other site"
/db_xref="CDD:72989"
misc_feature complement(441385..441414)
/locus_tag="CNE_1c04420"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72989"
misc_feature complement(441337..441354)
/locus_tag="CNE_1c04420"
/note="Walker B; other site"
/db_xref="CDD:72989"
misc_feature complement(441319..441330)
/locus_tag="CNE_1c04420"
/note="D-loop; other site"
/db_xref="CDD:72989"
misc_feature complement(441235..441255)
/locus_tag="CNE_1c04420"
/note="H-loop/switch region; other site"
/db_xref="CDD:72989"
gene complement(441837..442817)
/locus_tag="CNE_1c04430"
/db_xref="GeneID:10916834"
CDS complement(441837..442817)
/locus_tag="CNE_1c04430"
/codon_start=1
/transl_table=11
/product="multidrug resistance efflux pump"
/protein_id="YP_004684289.1"
/db_xref="GI:339324596"
/db_xref="GeneID:10916834"
/translation="MNPAHSTRPQLPAAVLATLAAVLLVAACSRERADTWQGYVEGEF
VSVASPFAGRLDTLSVQRGQQVGQGAALFALESDDERAARQQAEDQLRAAEAQLQDMK
TGKRPVEVEVSRAQLAQAQAQAQRSAAALRRDQRQYEIGGIAQAQLDESRAQANSDAA
RVRELQRDIDVARLPGRDAQQAAQAAQVAAARAALAQAEWKLSRKTVATTQAGLVYDT
PYRLGEWVPAGSPVVRMLPPGNVKVRFYVPETVVGALRNGQAVQVRCDGCAAPVAATI
SYVANEAEYTPPVIYSNETRRKLVFLVEARPAAADAPKLRPGQPVEVVRQ"
misc_feature complement(<441846..442685)
/locus_tag="CNE_1c04430"
/note="RND family efflux transporter, MFP subunit; Region:
RND_mfp; TIGR01730"
/db_xref="CDD:162505"
misc_feature complement(441864..442184)
/locus_tag="CNE_1c04430"
/note="HlyD family secretion protein; Region: HlyD_3;
pfam13437"
/db_xref="CDD:205615"
gene complement(442814..443509)
/locus_tag="CNE_1c04440"
/db_xref="GeneID:10916835"
CDS complement(442814..443509)
/locus_tag="CNE_1c04440"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_004684290.1"
/db_xref="GI:339324597"
/db_xref="GeneID:10916835"
/translation="MPRPPAKPKPSPRRSPGRPAAGQPGQRERILDAATDLFSRQGVA
GTAVKAIATQAGVTPALVHYYFSDRELLLDAVVEEKLQPLVASVFAAAGDAEPMAMLI
GIAGQLIRTAAATPWFPGLWIREVASADGALRERVLDRFALQRAGALSAPLAAAIARG
QLNSGLEPALVMPSLIGLTLLPLATTHIWRRLPGGEAVDTDTLVRHVSALLTHGLAPA
PDAGKSRLSPESS"
misc_feature complement(443282..443422)
/locus_tag="CNE_1c04440"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 443693..445069
/gene="oprB"
/locus_tag="CNE_1c04450"
/db_xref="GeneID:10916836"
CDS 443693..445069
/gene="oprB"
/locus_tag="CNE_1c04450"
/codon_start=1
/transl_table=11
/product="carbohydrate-selective porin"
/protein_id="YP_004684291.1"
/db_xref="GI:339324598"
/db_xref="GeneID:10916836"
/translation="MPFPPLATAPVRRALRFRRVLAALACCACLPAMAQQAEPVQGLA
EAESPFAFHGQSTYIWQRKPSFGAAYSGPNSLGTERAKSYSFSATLDLGLKLWQGAEF
HFNPEVTQGVPFSGLHGLGGLSNGELGKAASTNPVFYRARAFVRQTWGLGGGSEALEA
DFNQFARTVDQQRVVLTAGNFGVLDVFDQNEFGSDPRTQFMNWSFMTHGAFDYPADAR
GYSWGLSLEYIGDGWSARIGRFLQPLESNGLQLDTRMFEHYGDIIEVEKRYQLAGRPG
TARLLWFRNKARMGAFSDAIGFGMANNSTPDVADVRREHAKSGVGVTLVQQVTDSLGI
FARASLSDDKTETYAFTEIGRQVSAGGVLKGDAWGRARDALGVAVAINMLGPNHRNYL
AAGGLGAFLGDGALRYGPEQILEIYYSFQPVKYLSISPDFQYVRNPGYNRDRGPVKFY
GVRFHGEF"
misc_feature 443891..445066
/gene="oprB"
/locus_tag="CNE_1c04450"
/note="Carbohydrate-selective porin, OprB family; Region:
OprB; pfam04966"
/db_xref="CDD:191144"
misc_feature <444620..445051
/gene="oprB"
/locus_tag="CNE_1c04450"
/note="Carbohydrate-selective porin [Cell envelope
biogenesis, outer membrane]; Region: OprB; COG3659"
/db_xref="CDD:33457"
gene complement(445085..445918)
/gene="queF"
/locus_tag="CNE_1c04460"
/db_xref="GeneID:10916837"
CDS complement(445085..445918)
/gene="queF"
/locus_tag="CNE_1c04460"
/EC_number="1.7.1.13"
/codon_start=1
/transl_table=11
/product="NADPH-dependent 7-cyano-7-deazaguanine reductase
QueF"
/protein_id="YP_004684292.1"
/db_xref="GI:339324599"
/db_xref="GeneID:10916837"
/translation="MSLPEHSPLGKPSAYKTEYDASLLFPIPRQPKRTEIGLPEGKPV
PFFGVDIWNAYELSWLNLKGKPQVALASFIIPSDTPNIIESKSFKLYLNSFNQTKIAS
PEALQQLLHHDLSEATGGTVQVRLVTEADLGKQKMGELDGLLLDRLDIEVDRYEPAPE
LLSADQEETPVEETLVSHLLKSNCLVTGQPDWGSVQIRYVGAPINQEGLLKYLISFRN
HNEFHEQCVERIFMDVMRECKPVKLAVYARYTRRGGLDINPFRTNFNTAWPDNKRNAR
Q"
misc_feature complement(445088..445909)
/gene="queF"
/locus_tag="CNE_1c04460"
/note="7-cyano-7-deazaguanine reductase; Provisional;
Region: queF; PRK11792"
/db_xref="CDD:183317"
misc_feature complement(<445634..>445675)
/gene="queF"
/locus_tag="CNE_1c04460"
/note="Tunnelling fold (T-fold). The five known T-folds
are found in five different enzymes with different
functions: dihydroneopterin-triphosphate epimerase
(DHNTPE), dihydroneopterin aldolase (DHNA) , GTP
cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold;
cl00263"
/db_xref="CDD:212183"
misc_feature complement(445088..445516)
/gene="queF"
/locus_tag="CNE_1c04460"
/note="Enzyme related to GTP cyclohydrolase I [General
function prediction only]; Region: COG0780"
/db_xref="CDD:31123"
gene complement(445936..447474)
/gene="ilvA"
/locus_tag="CNE_1c04470"
/db_xref="GeneID:10916838"
CDS complement(445936..447474)
/gene="ilvA"
/locus_tag="CNE_1c04470"
/EC_number="4.3.1.19"
/codon_start=1
/transl_table=11
/product="threonine dehydratase biosynthetic"
/protein_id="YP_004684293.1"
/db_xref="GI:339324600"
/db_xref="GeneID:10916838"
/translation="MTRMSAARPDYLKKILTAKVYDVAQETELTYAHQLSARTGNAVW
FKREDTQPVFSFKLRGAYNKMASLTPEELRRGVIAASAGNHAQGVALSAARLQCKAII
AMPVTTPQVKIDAVRERGGQWVEIVLHGESYSDAYNYAAELEKKHKLTFIHPFDDPEV
IAGQGTIAMEILRQHPGPIHAVFVAIGGGGLISGIASYIKAVRPEIKVIGVQTVDSDA
MKRSVDAGKRVELKEVGLFSDGTAVKLVGKETFRITRELVDDIILVDTDAICAGLKDV
FQDTRSILEPAGALAVAGLKAYAEREKLKGQHLVAIACGANMNFDRLRFVAERAEVGE
AREAVFAVTIPEERGSFKRFCELVGTRSVTEFNYRIADTSMAHIFVGVQIASRAENDK
IAASFRKHGFDTLDLSNNELAKQHIRYMVGGRSALAHDELLFRFEFPERPGALMRFLS
SMSPNWNISLFHYRNQGADTSNILVGIQVPKNEKRAFRAFLSTLGYIHWDETDNPVYK
LFLS"
misc_feature complement(445939..447450)
/gene="ilvA"
/locus_tag="CNE_1c04470"
/note="threonine dehydratase; Reviewed; Region: PRK09224"
/db_xref="CDD:181709"
misc_feature complement(446518..447441)
/gene="ilvA"
/locus_tag="CNE_1c04470"
/note="Threonine dehydratase: The first step in amino acid
degradation is the removal of nitrogen. Although the
nitrogen atoms of most amino acids are transferred to
alpha-ketoglutarate before removal, the alpha-amino group
of threonine can be directly...; Region: Thr-dehyd;
cd01562"
/db_xref="CDD:107205"
misc_feature complement(order(446518..446529,446626..446634,
446644..446646,446653..446658,446665..446667,
446872..446877,447325..447330,447415..447420,
447427..447429,447436..447441))
/gene="ilvA"
/locus_tag="CNE_1c04470"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:107205"
misc_feature complement(order(446533..446535,446902..446916,
447223..447225,447304..447306))
/gene="ilvA"
/locus_tag="CNE_1c04470"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:107205"
misc_feature complement(447304..447306)
/gene="ilvA"
/locus_tag="CNE_1c04470"
/note="catalytic residue [active]"
/db_xref="CDD:107205"
misc_feature complement(446215..446448)
/gene="ilvA"
/locus_tag="CNE_1c04470"
/note="First of two 