LOCUS NC_015876 4727 bp DNA circular BCT 29-NOV-2011
DEFINITION Streptococcus pseudopneumoniae IS7493 plasmid pDRPIS7493, complete
sequence.
ACCESSION NC_015876
VERSION NC_015876.1 GI:342164902
DBLINK Project: 71153
BioProject: PRJNA71153
KEYWORDS .
SOURCE Streptococcus pseudopneumoniae IS7493
ORGANISM Streptococcus pseudopneumoniae IS7493
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae;
Streptococcus.
REFERENCE 1 (bases 1 to 4727)
AUTHORS Shahinas,D., Tamber,G.S., Arya,G., Wong,A., Lau,R., Jamieson,F.,
Ma,J.H., Alexander,D.C., Low,D.E. and Pillai,D.R.
TITLE Whole-genome sequence of Streptococcus pseudopneumoniae isolate
IS7493
JOURNAL J. Bacteriol. 193 (21), 6102-6103 (2011)
PUBMED 21994930
REFERENCE 2 (bases 1 to 4727)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (29-JUL-2011) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4727)
AUTHORS Shahinas,D., Singh,G., Arya,G., Lau,R., Wong,A., Jamieson,F.,
Alexander,D., Low,D.E. and Pillai,D.R.
TITLE Direct Submission
JOURNAL Submitted (20-JUL-2011) Molecular Research, Public Health Ontario,
Toronto Public Health Laboratory, 81, Resources Road, Toronto,
Ontario M9P 3T1, Canada
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP002926.
Annotation was added by the NCBI Prokaryotic Genomes Automatic
Annotation Pipeline Group. Information about the Pipeline can be
found here:
http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
aware that the annotation is done automatically with little or no
manual curation.
Bacteria is available from Dr. Dylan R. Pillai
(dylanrpillai@gmail.com).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4727
/organism="Streptococcus pseudopneumoniae IS7493"
/mol_type="genomic DNA"
/strain="IS7493"
/db_xref="taxon:1054460"
/plasmid="pDRPIS7493"
gene join(4451..4727,1..1226)
/locus_tag="SPPN_11483"
/db_xref="GeneID:11027470"
CDS join(4451..4727,1..1226)
/locus_tag="SPPN_11483"
/codon_start=1
/transl_table=11
/product="plasmid recombination enzyme"
/protein_id="YP_004769541.1"
/db_xref="GI:342164903"
/db_xref="GeneID:11027470"
/translation="MSYMVARMQKMKVGNLGGAYKHNERIFEKHSNKDIDTSRSHLNY
ELTDRDRSVSYERQIKDYVNENKSSKRGIRKDAVLCDEWIITSDKDFFEKLGQEQTRK
FFETAKNYFAENYGETNVAYASVHLDESTPHMHLGIVPMRNGKLSSKVMFNREELKHI
QEDLPKYMNEHGFELQRGKRDSKEQHLSVADYKEKMGREALNQELLDLGAPKYWHTEE
RRPATMSEIQDYEDIGSLFADSDVTFNIREATLEERFKWLDTHRNDLRADLGRLEGVL
EKKIDEYGKIDSEASERLSELSEVNSEVNSRQEEIKGLKSDSKRLSDDVVRLERAHRE
KTQLLVEQSSNLSKISYRDLDRRRVAKELQEELENATPKLFGDGFNFTSDFVGRLKTF
VSDVVEKLEQAVNQNELLRNALAGMKEAKSRLENSLSHAEWKNQQLETENKALKLENR
ELKVSKNLLDDLSEVITEKEVTSLNKRLENLRETRELSRKRHEPTKGRSI"
misc_feature join(4451..4727,1..305)
/locus_tag="SPPN_11483"
/note="Plasmid recombination enzyme; Region: Mob_Pre;
pfam01076"
/db_xref="CDD:201586"
gene 1435..1554
/locus_tag="SPPN_11488"
/db_xref="GeneID:11027471"
CDS 1435..1554
/locus_tag="SPPN_11488"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004769542.1"
/db_xref="GI:342164904"
/db_xref="GeneID:11027471"
/translation="MLELITLLVVVRVVLPLAYELGKAYGMKWIEKRFDDNEK"
gene 1813..2055
/locus_tag="SPPN_11493"
/db_xref="GeneID:11027472"
CDS 1813..2055
/locus_tag="SPPN_11493"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004769543.1"
/db_xref="GI:342164905"
/db_xref="GeneID:11027472"
/translation="MCRVWDCLQLRAVKTPDAFLRDWPDRVFFFEKLKKNEGFFLKEL
LSYLLYNLLYIYFGGVKKSVLSRVCEEISDKKVRDT"
gene 2203..3012
/locus_tag="SPPN_11498"
/db_xref="GeneID:11027473"
CDS 2203..3012
/locus_tag="SPPN_11498"
/note="COG5527 Protein involved in initiation of plasmid
replication"
/codon_start=1
/transl_table=11
/product="Rep"
/protein_id="YP_004769544.1"
/db_xref="GI:342164906"
/db_xref="GeneID:11027473"
/translation="MKKGKSENAFEGLMSRQDYLVVQANDLAKAFGNLKAFEHKLLDY
CFSYVTKESTATDTFTTNAKEVLKHFGLNASGKNYERVARGFKALNENTALYLPIVEN
GVKGILMTQLFRKIKFLANGEVEFIFSEDAAPYVFALRSQFFSFKLAELAQIKSKYAI
ILMKLWEANRFKNQRVTTIQGDLDDWQDWFLGEERRMPPAIFARNCLKVGAEELEKKL
GVDVYLNVVKNGRKVIGYEMQITDNRQVPTAEIIKQAEERSRQTDIYDFLD"
misc_feature 2251..2922
/locus_tag="SPPN_11498"
/note="Initiator Replication protein; Region: Rep_3;
pfam01051"
/db_xref="CDD:144588"
gene complement(3186..3644)
/locus_tag="SPPN_11503"
/db_xref="GeneID:11027474"
CDS complement(3186..3644)
/locus_tag="SPPN_11503"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004769545.1"
/db_xref="GI:342164907"
/db_xref="GeneID:11027474"
/translation="MKKLILFITTFLTLLSFTVTTYAETPKANQITPYSTATGNGGVS
KIEIYDNRSRAWWYARPYTKSSYQFSGGVRITLTNGRTLYYPVSGQGRAGQSVSGSIY
VSGKIKRVTFTGVAYGPGGIQIALPQSETNNYSSGGSGMSIPNPEILYEE"
gene 3643..3996
/locus_tag="SPPN_11508"
/db_xref="GeneID:11027475"
CDS 3643..3996
/locus_tag="SPPN_11508"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_004769546.1"
/db_xref="GI:342164908"
/db_xref="GeneID:11027475"
/translation="MVVLLYFLYDYIRIFLKMKGFSMKGDVFFDYFLKSLRFHLGDRC
KDIGFIEFAKNENNSFIIIKDYILESLVVLSNILSKERIVFSCGVIHSKGGVTGVEVC
MNVLELERLNNLYKI"
ORIGIN
1 aaaagttggg ccaggagcag acgagaaaat tttttgaaac ggctaaaaac tacttcgcgg
61 agaattacgg agaaaccaac gttgcttatg ccagtgtaca tcttgatgag agtaccccac
121 acatgcactt agggattgtg ccaatgagaa atggtaagct gtcatcaaag gttatgttta
181 accgtgagga gctaaagcat attcaggaag atttgccaaa gtacatgaat gagcatggtt
241 ttgagttgca acgtggaaag cgagatagca aagaacagca tttgagtgtg gcggactaca
301 aggaaaaaat ggggcgtgaa gctcttaatc aggaattgct agatttagga gcgccaaaat
361 attggcatac ggaagaacgt agacctgcaa caatgtcaga aattcaagat tatgaggaca
421 taggttcttt gtttgcagat tcagacgtga catttaacat ccgagaagcg acgttggaag
481 agcgtttcaa atggctagac actcatagaa acgatttaag ggcagattta ggacgtttag
541 agggtgtcct tgagaaaaag attgacgaat acggtaaaat cgattctgag gcttctgaga
601 ggctctcaga gctatctgag gtaaattctg aggtaaatag tcgtcaggag gaaataaagg
661 ggttaaaaag cgattctaag cgtctgagcg atgatgtggt tcgtctggag agagctcata
721 gagaaaaaac gcaacttttg gtggaacaat caagtaactt atcgaaaatt tcgtatagag
781 atttagatag acgtcgagtt gccaaagagt tgcaggaaga attagaaaat gctactccta
841 aactgtttgg cgatggcttt aattttactt cggattttgt tggacgactg aagacgtttg
901 tgtctgatgt tgtagagaag ctggagcagg cggtcaatca aaatgagtta cttagaaatg
961 cactagcagg catgaaagaa gcaaagagta ggcttgaaaa tagcctatct catgcagaat
1021 ggaaaaatca gcaattagag actgaaaaca aagcattaaa gctagaaaac agggagttga
1081 aagtttctaa aaatctctta gatgaccttt ctgaagtcat aacagaaaaa gaagtaacca
1141 gcctcaataa gcgtttagaa aacttaagag agacacgaga actgtctagg aaaagacatg
1201 agcctacaaa agggcggagt atctgagcga tttatgccgt gaaagctatt tgacaataag
1261 ctaggtcaag ttagactggt taaggcggtt cagtctgaac tttgttcagc tgaccgacaa
1321 accaaagact aacgacctag gttccttgtt gtcaaataga ccatggaata aagcaagcgg
1381 acatggtata atagcaatat tctggcacta agccttcgaa aggaggtgtt tagcttgtta
1441 gaactcatta ctcttcttgt tgttgtccga gtagtgttgc ccttagcgta cgagttgggg
1501 aaagcctatg ggatgaagtg gattgaaaag cgcttcgatg acaacgagaa atagtgtcac
1561 ttttcacgaa cgctagtgtg ttgtagctag cgcaaaaaag caccctaagt cttggcggac
1621 agggtgcttt tcgtttagcg tgatgaactc actactcttg ttgttgatta aattataaca
1681 tagttttata atgggtgtca aaaatagaca tttgtgatat aatcaaattg aggcgcctca
1741 gcgatacggt cggtggcgtg aatctcttta taggtcgggc aactggaaac ggatagctca
1801 aagggcacta ttttgtgtcg ggtgtgggac tgccttcagc ttcgagctgt aaagaccccg
1861 gatgcatttt taagagattg gcccgatagg gtcttttttt ttgaaaaatt aaaaaaaaat
1921 gaaggatttt ttctaaagga gttactttca tacttacttt ataacttact ttatatatac
1981 tttgggggtg tcaaaaagtc agtattatca agggtttgcg aggagataag tgacaaaaaa
2041 gtacgtgata catgacaaaa aagtacgtga tacatgacaa aaaagtacgt gatacatgac
2101 aaaaaagtac gtgatacatg acaaaaaagt aataaattac ttgaagtttg tcatgtaata
2161 ttatataatc atttatgaca aaaaagtacg tgaggttaag ccatgaaaaa agggaagtca
2221 gaaaatgcgt ttgagggctt gatgtctaga caagattatc tagtagtaca agcgaatgac
2281 ctagccaaag cctttgggaa tttaaaagcc tttgaacata agctactgga ctattgtttt
2341 agctatgtga ccaaagaaag cactgcaaca gatacattta cgacaaatgc aaaagaggtg
2401 ctgaagcact ttggattgaa cgcttcaggg aaaaactatg agcgtgtggc acgtggcttt
2461 aaagccctaa acgaaaacac tgcgttatat ctgccaatcg ttgagaatgg cgttaaaggg
2521 atattgatga cccagttatt tagaaaaatt aaattcttag ctaatggcga agtggaattt
2581 atcttttcag aagatgctgc gccttacgta tttgctttac gtagccagtt cttctcgttc
2641 aaattggcag agttagctca aatcaaatca aagtatgcca ttattttgat gaaattgtgg
2701 gaagcaaatc gctttaaaaa tcaacgtgtc acaaccattc aaggagattt agacgattgg
2761 caagattggt ttttagggga agagagaaga atgccccctg caatctttgc aaggaactgt
2821 ctgaaagttg gggcagaaga gctagagaaa aaattagggg tagatgttta tctaaacgta
2881 gttaaaaatg gccgaaaggt cataggctat gaaatgcaga ttactgataa tcgacaagta
2941 ccaactgcag agataatcaa gcaagctgaa gaaagaagtc gacagacaga tatttatgat
3001 tttttagatt aagcactgtt caaaaatcta agtatggttc aaatggttgt aactgtcatg
3061 gaaaacactt gtttatatct aatttatgag taaaaagatg ctattgagat gaaaaagcag
3121 ctcgatgttg atgaaattta aagagactgg gacaaaattg tcccagtctc tttcttgtta
3181 gtgaattatt cttcgtatag aatttcaggg ttcggtatgc tcatccctga accaccacta
3241 ctgtaattat ttgtttctga ttgaggaagt gctatttgta ttccaccagg gccgtaagct
3301 acacctgtaa aagttactct ttttattttt ccgcttacat atattgaacc actaactgat
3361 tgtcctgccc taccttgacc gcttaccggg taatataagg tacggccatt tgttaatgta
3421 atacgaactc ctccagagaa ttgataagag cttttagtat aaggtcgtgc gtaccaccat
3481 gctctacttc ggttatcata aatttctatt ttggaaactc caccatttcc agttgcagta
3541 gaatatgggg tgatttggtt tgcttttgga gtttcggcat atgttgtaac agtaaatgaa
3601 agaagagtga gaaaggtagt tataaataaa ataagttttt tcatggtagt tctcctttat
3661 tttttgtatg attatatcag aatattttta aaaatgaaag ggttttctat gaagggtgat
3721 gttttttttg attatttttt gaaatcactt aggtttcatc ttggtgatag gtgtaaggat
3781 attggattta tagagtttgc taagaatgaa aataatagtt ttattattat aaaggattat
3841 attttagaat cattagtagt gttgtcaaat attttgagta aggagaggat tgtgttttct
3901 tgtggggtta ttcatagtaa ggggggagtt actggagtag aagtatgtat gaatgtatta
3961 gagttagaaa gattaaataa tttgtataag atatagtttt gaagaatatt aaaaaatata
4021 atggaaactg tctatgtagg atgtgtggag ttgatagtat caatgtttcc tatggagata
4081 attttctcaa ctatgtttac tttgattttt tggtcggaca atagcgaagc cgtccgactg
4141 tcattttgaa aaaatgactt tgggggactt atcgaagtcg cccaattttt caaaaaatgc
4201 ccttgcgatt cgagggcttt ttttgtagtt cgccctggca taaagtgggc ggactagctc
4261 tctgcaagag ccttcggaga acgcactttt acgaagtaaa gtatagtgcg ttatattata
4321 ctttacttgg aagttagccg aaatttgtgc taaaattcta gctagaatgt tatcacaata
4381 gacgagcaat aggcttgccg gctcgtctgt cattcgctac tcgaatgacc cacctgagga
4441 ggtaaaagtt atgagctaca tggttgcgag aatgcagaaa atgaaagttg ggaatttggg
4501 tggcgcatat aagcacaatg aacggatttt tgaaaagcac tcaaacaaag acatcgacac
4561 gagcaggtca cacctcaact atgagttgac ggatcgtgac cgctctgtgt cgtatgaacg
4621 gcaaattaag gactatgtga acgagaacaa gagttctaaa cgtgggatac ggaaagacgc
4681 tgttttgtgt gatgaatgga ttattacgtc agataaagat ttttttg
//
