LOCUS NC_016935 8739048 bp DNA circular BCT 25-DEC-2012
DEFINITION Paenibacillus mucilaginosus 3016 chromosome, complete genome.
ACCESSION NC_016935
VERSION NC_016935.1 GI:379718015
DBLINK Project: 89377
BioProject: PRJNA89377
KEYWORDS .
SOURCE Paenibacillus mucilaginosus 3016
ORGANISM Paenibacillus mucilaginosus 3016
Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae;
Paenibacillus.
REFERENCE 1 (bases 1 to 8739048)
AUTHORS Ma,M., Wang,Z., Li,L., Jiang,X., Guan,D., Cao,F., Chen,H., Wang,X.,
Shen,D., Du,B. and Li,J.
TITLE Complete genome sequence of Paenibacillus mucilaginosus 3016, a
bacterium functional as microbial fertilizer
JOURNAL J. Bacteriol. 194 (10), 2777-2778 (2012)
PUBMED 22535950
REFERENCE 2 (bases 1 to 8739048)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (27-FEB-2012) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 8739048)
AUTHORS Ma,M., Li,L., Jiang,X., Wang,Z., Guan,D., Cao,F., Chen,H., Wang,X.,
Shen,D., Feng,R., Ge,Y., Bing,X., Yang,X., Du,B. and Li,J.
TITLE Direct Submission
JOURNAL Submitted (27-DEC-2011) Institute of Agricultural Resources and
Regional Planning, Chinese Academy of Agriculture Sciences, 12
Zhongguancun South Street Haidian District, Beijing, Beijing
100081, China
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CP003235.
Source DNA is available from China General Microbiological Culture
Collection Center (CGMCC, htp://www.cgmcc.net/).Bacteria available
from CGMCC.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..8739048
/organism="Paenibacillus mucilaginosus 3016"
/mol_type="genomic DNA"
/strain="3016"
/isolation_source="rhizosphere soil"
/db_xref="taxon:1116391"
gene 1..1362
/locus_tag="PM3016_1"
/db_xref="GeneID:11889114"
CDS 1..1362
/locus_tag="PM3016_1"
/codon_start=1
/transl_table=11
/product="ATPase DnaA"
/protein_id="YP_005310147.1"
/db_xref="GI:379718016"
/db_xref="GeneID:11889114"
/translation="MESHPNDQWQQVLLILQKRVSKPSYETWLASTRAVVFNKSTVTI
CAPNKFAREWLEDRYTKHINEAIVDYMGHPVELKFTIEDEQTEAAGTPSEALPVKPKQ
PPAAEETFSHMMNPKYTFDTFVIGAGNRFAHAASLAVAEAPAKAYNPLFLYGGVGLGK
THLMHAIGHFVLEHNPSARVLYISSEKFTNEFINAIRDNRGESFRAKYRSIDILLIDD
IQFLAGKEQTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDI
QPPDLETRIAILRKKAKAENLDIPNEAMVYIANQIDSNIRELEGALIRVVAYSSLINE
DITSHLAAEALKDIIPSSRPKVITIQDIQAKVGEFYGLKIEDFKARKRTKTVAFPRQI
AMYLAREMTDFSLPKIGDAFGGRDHTTVIHAHEKISAALKVDQDLYKIIQNISEKVKN
VTM"
misc_feature 16..1350
/locus_tag="PM3016_1"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 16..201
/locus_tag="PM3016_1"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 379..816
/locus_tag="PM3016_1"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 460..483
/locus_tag="PM3016_1"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(463..486,649..651,748..750)
/locus_tag="PM3016_1"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 637..654
/locus_tag="PM3016_1"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 787..789
/locus_tag="PM3016_1"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1075..1344
/locus_tag="PM3016_1"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1144..1146,1168..1173,1192..1194,1210..1218,
1243..1257,1264..1266,1273..1278)
/locus_tag="PM3016_1"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 1594..2736
/locus_tag="PM3016_2"
/db_xref="GeneID:11889116"
CDS 1594..2736
/locus_tag="PM3016_2"
/codon_start=1
/transl_table=11
/product="DnaN protein"
/protein_id="YP_005310148.1"
/db_xref="GI:379718017"
/db_xref="GeneID:11889116"
/translation="MKLTVLKEYLNESIQHVSKAISSKTTIPILGGIKIDADSTGMTL
TASDTDISIQSFIPKEKNEISVIDLKQTGSVVLPSKFFVEIIRKLPAQQVEIEVKEGF
HTTIRSGSSEIQLVGLDPEEYPIMPGIEENKRIQIPSDLLKTMIKQTAFAVSTNEATP
ILTGILWTIADGKLKFTACDRHRLASRETSIDTEEGLVLNNVSISGKTLNELSKILPD
QNTLIDVVFAENQVLFKMSSILFYSRILDGTYPDTSKLIPQSYQTELVINTDDLADAI
DRAYLLSREEKTNIVKLIMREDQTIEISSSSSELGKVTEELTASRLNGELLRISFNSK
YMLDALKVMDSEQIHIGFTGAMQPIIIRPDENSSLLQLILPYRTTG"
misc_feature 1594..2727
/locus_tag="PM3016_2"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature 1594..2724
/locus_tag="PM3016_2"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(1663..1665,1831..1833,1852..1854,2212..2214)
/locus_tag="PM3016_2"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(1834..1836,1843..1845,1921..1923,1927..1929,
2434..2436,2533..2538)
/locus_tag="PM3016_2"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(2128..2130,2134..2145,2587..2589,2713..2724)
/locus_tag="PM3016_2"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(2128..2130,2134..2139,2359..2361,2467..2469,
2509..2514,2596..2598,2713..2724)
/locus_tag="PM3016_2"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 2749..2964
/locus_tag="PM3016_3"
/db_xref="GeneID:11889118"
CDS 2749..2964
/locus_tag="PM3016_3"
/codon_start=1
/transl_table=11
/product="YaaA-like protein"
/protein_id="YP_005310149.1"
/db_xref="GI:379718018"
/db_xref="GeneID:11889118"
/translation="MKTVSIHTEYITLGQFLKLADCISTGGQAKPFLEETPITVNGEP
ENRRGRKLRPSDIIKVQGCGEFQVVQG"
misc_feature 2755..2931
/locus_tag="PM3016_3"
/note="S4 domain protein YaaA; Region: YaaA_near_RecF;
TIGR02988"
/db_xref="CDD:132033"
misc_feature order(2818..2823,2827..2832,2836..2841,2848..2853,
2857..2859,2878..2901,2905..2907)
/locus_tag="PM3016_3"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 2964..4071
/locus_tag="PM3016_4"
/note="RecF"
/pseudo
/db_xref="GeneID:11889144"
gene 4101..4349
/locus_tag="PM3016_6"
/db_xref="GeneID:11889186"
CDS 4101..4349
/locus_tag="PM3016_6"
/codon_start=1
/transl_table=11
/product="protein YaaB"
/protein_id="YP_005310150.1"
/db_xref="GI:379718019"
/db_xref="GeneID:11889186"
/translation="MFIHLGGEKIIRASELVAIFDLSIEKSSKISKQFVTYASKEKRV
EVIGDEESKSLVVTQSKVYYSPISSMTLKKRAHQLLTN"
gene 4440..6353
/locus_tag="PM3016_7"
/db_xref="GeneID:11889188"
CDS 4440..6353
/locus_tag="PM3016_7"
/codon_start=1
/transl_table=11
/product="protein GyrB"
/protein_id="YP_005310151.1"
/db_xref="GI:379718020"
/db_xref="GeneID:11889188"
/translation="MSVNPGTTYDESQIQVLEGLEAVRKRPGMYIGSTSARGLHHLVW
EVVDNSIDEALAGYCTRIEVIVHKDNSITVIDNGRGIPVGEHPKLKKSTLEVVLTHAG
GKFGGDESGYKVSGGLHGVGISVVNALSKKLVVQVKREGKVHQQEFSCGVPQYDLKII
GETEETGTQATFWPDEEIFKETTEYDFDTLQSRIRELAFLNKGIEIVLTDERSDVSNS
FMYEGGIVSFVEHLNRNREPLHEPPIFVEGEKDNITVEVALQYNDTYAENIYSFANNI
NTHEGGTHESGFKSALTRILNEYARKYNTIKDNDANLSGDDVREGLTAIISVKIPEPQ
FEGQTKTKLGNSEVRGIVESLFSDKLEEFLVENPSVAKKIVEKGVQAQRAREAARKAR
ELTRRKSALEVSSLPGKLADCSSKDASISEVYIVEGDSAGGSAKQGRDRHFQAILPLR
GKILNVEKARLDKILSNAEIRAIITALGTGIGDDFEITKARYHKVIIMTDADVDGAHI
RTLLLTFFFRYMRKLIEAGFVYIAQPPLYKLERNKTIRYAYNDKQREAIMAEFGEGAK
VNVQRYKGLGEMNPGQLWETTMDPDSRTLLQVSIQDAIDADVVFDTLMGDAVEPRRDF
IQLHARYVKNLDI"
misc_feature 4449..6350
/locus_tag="PM3016_7"
/note="DNA gyrase subunit B; Validated; Region: gyrB;
PRK05644"
/db_xref="CDD:180181"
misc_feature 4554..>4838
/locus_tag="PM3016_7"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(4572..4574,4584..4586,4593..4595,4659..4661,
4665..4667,4671..4673,4677..4682,4797..4808)
/locus_tag="PM3016_7"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 4584..4586
/locus_tag="PM3016_7"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(4671..4673,4677..4679,4797..4799,4803..4805)
/locus_tag="PM3016_7"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 5106..5576
/locus_tag="PM3016_7"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 5259..5261
/locus_tag="PM3016_7"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(5433..5435,5442..5447,5451..5453)
/locus_tag="PM3016_7"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(5451..5453,5457..5459)
/locus_tag="PM3016_7"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 5700..6041
/locus_tag="PM3016_7"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(5718..5723,5730..5732,5937..5939,5943..5945,
5949..5951)
/locus_tag="PM3016_7"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(5718..5720,5937..5939)
/locus_tag="PM3016_7"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 6126..6317
/locus_tag="PM3016_7"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 6555..9062
/locus_tag="PM3016_8"
/db_xref="GeneID:11889190"
CDS 6555..9062
/locus_tag="PM3016_8"
/codon_start=1
/transl_table=11
/product="protein GyrA"
/protein_id="YP_005310152.1"
/db_xref="GI:379718021"
/db_xref="GeneID:11889190"
/translation="MSEEPRSQVKEIDIGSEMRTSFMDYAMSIIVSRALPDVRDGLKP
VHRRILFAMSELGMSPDKPYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSLRYM
LVDGHGNFGSIDGDMAAAMRYTEARLSKIAMELLRDINKETIDFVPNYDGEEQEPAVL
PSRFPNLLVNGLSGIAVGMATNIPPHNLTEVINGVQQLIQNPEVTPLELMQSIKGPDF
PTGGYIMGREGIKQAYATGRGSVIMRAKTLIEENGNKARIIVYELPYQVNKARLIEKI
AELVREKKIDGITDLRDESDRNGMRIVIELRRDVNPNVVLNNLYKQTAMQSNFGIIML
ALVNGEPKVLNLRDVLFHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDHLDEV
IALIRASRTTEEAREGLMTRFGLSFDQAQAILDMRLQRLTGLERQKIEEEYAELLKKI
AEYKAILADEQLVLAIISEELNEIKEKFGDERRSEITIGEESIEDEDLIPQSDVVITI
THTGYIKRLPVTTYRSQRRGGKGIMGMDTKDKDFVEHLFVTNTHHYLLFFTNKGKVYR
LKAYEIPDLSRTARGTPIINLIQIEQGETINAVIPVESFDSDKYLFFASKKGLVKKTS
LDDYSNIRKGGLIAITLREDDDLIGVRLTDGNQSIIMGTAQGMSIHFPENEVRPMGRS
ATGVKGIQLDEEDHVIDMDVVHEDNSVLIVTSKGFGKRTPVSEYRLQSRGGKGIKTLN
VTSKNGPVVGLKVVQEEEDLMIITAFGTVIRTSMSGISLMGRNTQGVRLINIREEDEV
STLARVEKSDDPADDAEGEESEEIQGTSEGFDETSEE"
misc_feature 6567..8978
/locus_tag="PM3016_8"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:180128"
misc_feature 6645..7976
/locus_tag="PM3016_8"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(6645..6728,6741..6890,6894..6950,6954..7025,
7032..7034)
/locus_tag="PM3016_8"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 6921..6923
/locus_tag="PM3016_8"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(7713..7721,7728..7739,7770..7775,7815..7865)
/locus_tag="PM3016_8"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
misc_feature 8061..8204
/locus_tag="PM3016_8"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8211..8363
/locus_tag="PM3016_8"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8379..8516
/locus_tag="PM3016_8"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8523..8666
/locus_tag="PM3016_8"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8673..8816
/locus_tag="PM3016_8"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8826..8969
/locus_tag="PM3016_8"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
gene 9206..10276
/locus_tag="PM3016_9"
/db_xref="GeneID:11889385"
CDS 9206..10276
/locus_tag="PM3016_9"
/codon_start=1
/transl_table=11
/product="metal dependent phosphohydrolase"
/protein_id="YP_005310153.1"
/db_xref="GI:379718022"
/db_xref="GeneID:11889385"
/translation="MASVPVSQLKYGDRISDNVVTKRNQVLFPKGRVISGRDVEILQA
FLISSVEIESKNGSRETAAESPVPSDVPEPVKSTFQEQYDKMLRLLKQVFDAVGPGGQ
ALPILEIRTALEGLIRHIDQYNVLTFSPKVFQLTDYMYHNSIMVGLTSFQLARWHGCA
PKDLIPIALAGLLHDIGNAKLDTSILFKQDALTSAEFEGMKKHTILGYNILKGVAAIN
EGVKLCALQHHEREDGTGYPLGISGDKIHSYAKIVAVTDMFHAMTSDRFHKKAKSRYL
VLEELLQESFGKLDPAIVQTFIQKVTSFHNGTLVKLSDGRTGEIVFSDRSNPTRPWVN
VNGAIINLTVERSLYILDVLPQ"
misc_feature <9614..10207
/locus_tag="PM3016_9"
/note="c-di-GMP phosphodiesterase class II (HD-GYP domain)
[Signal transduction mechanisms]; Region: COG2206"
/db_xref="CDD:32388"
misc_feature 9614..10051
/locus_tag="PM3016_9"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(9629..9631,9725..9730,9974..9976)
/locus_tag="PM3016_9"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 9728..9730
/locus_tag="PM3016_9"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene 10602..12126
/locus_tag="PM3016_r1"
/db_xref="GeneID:11889041"
rRNA 10602..12126
/locus_tag="PM3016_r1"
/product="16S ribosomal RNA"
/db_xref="GeneID:11889041"
gene 12414..15341
/locus_tag="PM3016_r2"
/db_xref="GeneID:11881973"
rRNA 12414..15341
/locus_tag="PM3016_r2"
/product="23S ribosomal RNA"
/db_xref="GeneID:11881973"
gene 15441..15556
/locus_tag="PM3016_r3"
/db_xref="GeneID:11881974"
rRNA 15441..15556
/locus_tag="PM3016_r3"
/product="5S ribosomal RNA"
/db_xref="GeneID:11881974"
gene 15734..17190
/locus_tag="PM3016_11"
/note="GuaB"
/pseudo
/db_xref="GeneID:11881975"
gene 17323..18627
/locus_tag="PM3016_13"
/db_xref="GeneID:11881976"
CDS 17323..18627
/locus_tag="PM3016_13"
/codon_start=1
/transl_table=11
/product="serine-type D-Ala-D-Ala carboxypeptidase"
/protein_id="YP_005310154.1"
/db_xref="GI:379718023"
/db_xref="GeneID:11881976"
/translation="MFVRAKRICSTLAVTLLLHTTLAAVQPAAVRAEEAPPAQSTELQ
LNAKSAVLMDAATGQILYQYNADVAYPPASMAKMMTEYLVMEAVDQGKLKLDEMVTTS
QYAADVIGSGQLLAANEQATVDNLFAAMSIYSSNDASVALAERIAGTEEKFAQMMNDK
AKEFGLSPQAHFNNATGLSIADLGKYAPKENKQETMLTAKDAAIIAYHMIKDHKKVLE
YTKTSSRKFREKDAAPMVNWNWMLEANKDNANFKRYAYTGLDGLKTGHTDEAGYCFTG
TAERNGMRLISVVMGTPTEPKRFEETRKVLDYGFNNFESKQIAAAGAPISSMQTVNIK
KGVETEVPVVTEQEMKLVVKKGTPDDQIQVTGQAVADEAKLTAPIQKGQVVGTAKVTY
NGSEHTVNLVAAQDVEKGSWIRLFFRAIKNFFVDTINGAKKG"
misc_feature 17440..18594
/locus_tag="PM3016_13"
/note="D-alanyl-D-alanine carboxypeptidase [Cell envelope
biogenesis, outer membrane]; Region: DacC; COG1686"
/db_xref="CDD:31872"
misc_feature 17491..>17931
/locus_tag="PM3016_13"
/note="Penicillin binding protein transpeptidase domain;
Region: Transpeptidase; cl01009"
/db_xref="CDD:207282"
misc_feature 18259..18549
/locus_tag="PM3016_13"
/note="Penicillin-binding protein 5, C-terminal domain;
Region: PBP5_C; smart00936"
/db_xref="CDD:198004"
gene 18746..19627
/locus_tag="PM3016_14"
/db_xref="GeneID:11881977"
CDS 18746..19627
/locus_tag="PM3016_14"
/codon_start=1
/transl_table=11
/product="protein PdxS"
/protein_id="YP_005310155.1"
/db_xref="GI:379718024"
/db_xref="GeneID:11881977"
/translation="METGTSRVKKGMAEMQKGGVIMDVMNAEQARIAEAAGASAVMAL
ERVPSDIRAAGGVARMADPTVVEEVMKVVSIPVMAKARIGHFVEAKVLESMGVDYIDE
SEVLTPADEVFHINKKEFTVPFVCGARDLGEALRRIGEGASMLRTKGEPGTGNIVEAV
RHMRLINGQIRKIQSLSKDELMAEAKNLGAPYELLLQVHETGRLPVVNFAAGGVATPA
DAALMMHLGSDGVFVGSGIFKSDSPEKFAKAIVEATTHYNDYELIAKVSKNLGTPMKG
IEISKLHASERMQERGW"
misc_feature 18773..19621
/locus_tag="PM3016_14"
/note="PdxS is a subunit of the pyridoxal 5'-phosphate
(PLP) synthase, an important enzyme in deoxyxylulose
5-phosphate (DXP)-independent pathway for de novo
biosynthesis of PLP, present in some eubacteria, in
archaea, fungi, plants, plasmodia, and some...; Region:
pdxS; cd04727"
/db_xref="CDD:73389"
misc_feature order(18812..18814,18869..18871,18983..18985,19199..19207,
19382..19384,19439..19441)
/locus_tag="PM3016_14"
/note="active site"
/db_xref="CDD:73389"
misc_feature order(18914..18916,18920..18922,18944..18946,18989..18991,
18998..19006,19013..19015,19064..19078,19202..19210,
19214..19216,19223..19228,19235..19237,19388..19390,
19397..19402,19523..19525)
/locus_tag="PM3016_14"
/note="multimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73389"
gene 19668..20240
/locus_tag="PM3016_15"
/db_xref="GeneID:11881978"
CDS 19668..20240
/locus_tag="PM3016_15"
/codon_start=1
/transl_table=11
/product="protein PdxT"
/protein_id="YP_005310156.1"
/db_xref="GI:379718025"
/db_xref="GeneID:11881978"
/translation="MKIGVLALQGAVAEHVKMIEKAGAEGVPVKRTEQLGEIDGIIIP
GGESTTIGKLMRTYGFLDALREFSRQGKPLFGTCAGLIVLAKEIEGQDEAHLGLMDMN
VARNAFGRQRESFETDLDIKGIDKDVRAVFIRAPLINSVGEGVDVLSEYNGQIVAARQ
GHLLAASFHPELTDDERMHAYFLDMVRETR"
misc_feature 19674..20216
/locus_tag="PM3016_15"
/note="Glutamine Amidotransferase (GATase_I) involved in
pyridoxine biosynthesis; Region: GATase1_PB; cd01749"
/db_xref="CDD:153220"
misc_feature order(19800..19808,19899..19901,19980..19982,20064..20069,
20172..20174,20178..20180)
/locus_tag="PM3016_15"
/note="predicted active site [active]"
/db_xref="CDD:153220"
misc_feature order(19899..19901,20172..20174,20178..20180)
/locus_tag="PM3016_15"
/note="catalytic triad [active]"
/db_xref="CDD:153220"
gene 20252..21532
/locus_tag="PM3016_16"
/db_xref="GeneID:11881979"
CDS 20252..21532
/locus_tag="PM3016_16"
/codon_start=1
/transl_table=11
/product="SerS protein"
/protein_id="YP_005310157.1"
/db_xref="GI:379718026"
/db_xref="GeneID:11881979"
/translation="MLDVKLLRGDLDRVKQGLSNRGANLDDLDRFTSLDTNRRQLLQE
VEQLKNRRNVVSQEVAQLKKAKENADHLIEEMKVVGDRIKALDEEIRVLEADLDSILM
SLPNMPQDSVPVGSSEEENVEIRRVGDVPAFGFEPKPHWEVAQALDILDFENAGKVTG
SRFVFYKGLGARLERALINFMMDLHADQHGYEEMLPPQIVNRDSLTGTGQLPKFAEDV
FKLEGTDYFLIPTAEVPVTNYHRDDILSAEDLPKYFVAFSACFRSEAGSAGRDTRGLI
RQHQFNKIELVKLTLPEQSNDELEKLTADAEKVLQLLKLPYRVLSLCTGDIGFSSSKT
YDLEVWLPNSNTYREISSCSNFEDFQARRANIRFRRDAKAKPEFVHTLNGSGLALGRT
VAAILENYQQEDGSVLIPEVLRPYMGGVTKISKK"
misc_feature 20252..21529
/locus_tag="PM3016_16"
/note="seryl-tRNA synthetase; Provisional; Region:
PRK05431"
/db_xref="CDD:180077"
misc_feature 20252..20575
/locus_tag="PM3016_16"
/note="Seryl-tRNA synthetase N-terminal domain; Region:
Seryl_tRNA_N; pfam02403"
/db_xref="CDD:202232"
misc_feature 20609..21502
/locus_tag="PM3016_16"
/note="Seryl-tRNA synthetase (SerRS) class II core
catalytic domain. SerRS is responsible for the attachment
of serine to the 3' OH group of ribose of the appropriate
tRNA. This domain It is primarily responsible for
ATP-dependent formation of the enzyme bound...; Region:
SerRS_core; cd00770"
/db_xref="CDD:29815"
misc_feature order(20711..20728,20735..20755,20765..20767,20771..20773,
20777..20779,20786..20788,20825..20836,20840..20848,
20852..20854,20906..20911,20915..20917,20927..20929,
20954..20956,20966..20968,20978..20980,21026..21028,
21089..21091,21497..21502)
/locus_tag="PM3016_16"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29815"
misc_feature order(20732..20734,20942..20944,20948..20950,21035..21037,
21041..21043,21059..21061,21068..21070,21077..21079,
21083..21085,21092..21094,21098..21100,21104..21106,
21296..21307,21398..21400,21404..21406,21422..21424)
/locus_tag="PM3016_16"
/note="active site"
/db_xref="CDD:29815"
misc_feature 20825..20848
/locus_tag="PM3016_16"
/note="motif 1; other site"
/db_xref="CDD:29815"
misc_feature 21032..21043
/locus_tag="PM3016_16"
/note="motif 2; other site"
/db_xref="CDD:29815"
misc_feature order(21407..21415,21422..21424)
/locus_tag="PM3016_16"
/note="motif 3; other site"
/db_xref="CDD:29815"
gene 21580..21666
/locus_tag="PM3016_t1"
/db_xref="GeneID:11881980"
tRNA 21580..21666
/locus_tag="PM3016_t1"
/product="tRNA-Ser"
/db_xref="GeneID:11881980"
gene 21807..22157
/locus_tag="PM3016_17"
/db_xref="GeneID:11881981"
CDS 21807..22157
/locus_tag="PM3016_17"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310158.1"
/db_xref="GI:379718027"
/db_xref="GeneID:11881981"
/translation="MMSNNDKLQIDSKRLAEAWQNTLPRVLEESDRAEVKADEAEPNA
LRVRISTAGRTMYNFDFKCTYVDSREVKVELVDVERGGGSVDERTTVIQNLVDDYVRH
LHECAQQLHSVTHS"
gene 22175..22357
/locus_tag="PM3016_18"
/db_xref="GeneID:11881982"
CDS 22175..22357
/locus_tag="PM3016_18"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310159.1"
/db_xref="GI:379718028"
/db_xref="GeneID:11881982"
/translation="MTKNKSGVDKNLQNVVEDLEVRPVNSHQAQQIQQQTNDHRHQDS
LNHDKEPHAFTLTDKD"
gene 22381..22524
/locus_tag="PM3016_19"
/db_xref="GeneID:11881983"
CDS 22381..22524
/locus_tag="PM3016_19"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310160.1"
/db_xref="GI:379718029"
/db_xref="GeneID:11881983"
/translation="MPKDIPQPVNPPTGQENQHEQRQRTGPKPGSKRIKNENHSRHNN
GEG"
gene complement(22611..22796)
/locus_tag="PM3016_20"
/db_xref="GeneID:11881984"
CDS complement(22611..22796)
/locus_tag="PM3016_20"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310161.1"
/db_xref="GI:379718030"
/db_xref="GeneID:11881984"
/translation="MPAESCYYIIYDDFSISICTMLDEVCDAVAGGALLYGYTDNEDM
AQWMLNECFHVVEKGNL"
gene complement(22935..25265)
/locus_tag="PM3016_21"
/db_xref="GeneID:11881985"
CDS complement(22935..25265)
/locus_tag="PM3016_21"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase replicase"
/protein_id="YP_005310162.1"
/db_xref="GI:379718031"
/db_xref="GeneID:11881985"
/translation="MTQDPVWQEEKKRLGHVLERIQEEIKRTEALSEERLTTVAEARK
DFWSDISVNLSNRDDIMETYAAITQQSMMLGGQERSLQHAEDNRYRLLRMYNSPYFGR
IDFTEDGTDDTQQIYIGIGSVLDEETQTYWVYDWRAPVSSLFYDYPPGPASYKTPAGT
IDGQLELKRQYMIRGGELKALFDTGVTIGDEVLQEILGGHADDRMKSIVATIQSEQNR
IIRDDTHPVLIVQGAAGSGKTSVALQRVAYLMYKHRQTLHADNMVLFSPNALFNSYVA
SVLPELGEANMQQTTYQEYLRLRLSRQFEVEDAYDQIETLLGLSPEDSDYELRTASIR
FKSSRAYIEVIERYAKRLEKEGMLFQDLIFRGRVLISRERMAEEFYRLDPGLKLSNKL
HLLKEWLLKELKELAKLERRKSWVKKEIELLDKEDYQRAYNALQKQAGEREVAFDDAQ
QEALLLAKFVVHERFKSLRSRIKALRFVSGALLYKQMLSDESWTADDATLSLPGEWDA
VRLWTLERMEAGQLPYEDATPLLYLTGLMEGFHSYNAVRHVLIDEAQDYSAFQLAFLR
RLFPRARMTLLGDFNQAIYAHTHGGGDTADTGYGVVYDLFGKDQVELIRLVRSYRSTR
NIVDFTLKILPAGEPVEAFNRSGEDPRILQVKDTDELHRVIAQEVARLREKGQQSIAV
ICKTASEARSANDALSSLLQTELITKDTRIFPEGVLVLPAYLAKGLEFDAVIVYNASG
KRYGNDNERKLLYTACTRAMHQLTVCAVGSVSPLLD"
misc_feature complement(22959..25259)
/locus_tag="PM3016_21"
/note="Superfamily I DNA and RNA helicases [General
function prediction only]; Region: COG3973"
/db_xref="CDD:33754"
misc_feature complement(24417..24593)
/locus_tag="PM3016_21"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature complement(22968..23264)
/locus_tag="PM3016_21"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene 25422..26165
/locus_tag="PM3016_22"
/db_xref="GeneID:11881986"
CDS 25422..26165
/locus_tag="PM3016_22"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310163.1"
/db_xref="GI:379718032"
/db_xref="GeneID:11881986"
/translation="MIILKTPEEIAKMREAGQILAACHREIAKIVRPGITTMEINDFA
EAFIVKHGASQVTKGFKGFPAATCASVNDVIAHGFPSKEPLVNGDIVKIDIVCCYNGW
MADTCETYAVGTISPEAEKLVRVTKECLNLGISKALIGNRIGDVVSAIQKHAEGNGFS
VVRDLVAHGIGRNMHEEPSFPHAGKPGRGFRLEEGMVFTIEPMVNAGKHEMFIDFDGW
TARTMDGSLSAQFEHTVAITKDGPLVLTQ"
misc_feature 25449..26162
/locus_tag="PM3016_22"
/note="Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides;
Region: MetAP1; cd01086"
/db_xref="CDD:29971"
misc_feature order(25650..25652,25701..25703,25734..25736,25923..25925,
26022..26024,26115..26117)
/locus_tag="PM3016_22"
/note="active site"
/db_xref="CDD:29971"
gene complement(26388..26460)
/locus_tag="PM3016_t2"
/db_xref="GeneID:11881987"
tRNA complement(26388..26460)
/locus_tag="PM3016_t2"
/product="tRNA-Arg"
/db_xref="GeneID:11881987"
gene 26680..27168
/locus_tag="PM3016_24"
/db_xref="GeneID:11881988"
CDS 26680..27168
/locus_tag="PM3016_24"
/codon_start=1
/transl_table=11
/product="ECF subfamily RNA polymerase sigma-24 subunit"
/protein_id="YP_005310164.1"
/db_xref="GI:379718033"
/db_xref="GeneID:11881988"
/translation="MERYGTDLYKAVYSVLHSAGDAEDVTQEVLLKIYSSLPQYRHGG
LKTWLTRIAVHKAIDYKRSKDRKREQLTEEWEAIGAAARSPGSPVEEKVLRRDRRERV
RENLERLPGAYRDVVVAFYLEDKSYQQIADEQQVAVKTVESKLYRAKQYMRKAWREED
LE"
misc_feature 26680..27162
/locus_tag="PM3016_24"
/note="RNA polymerase sigma factor SigW; Reviewed; Region:
PRK09642"
/db_xref="CDD:170031"
misc_feature 26683..26877
/locus_tag="PM3016_24"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 27007..27138
/locus_tag="PM3016_24"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(27007..27009,27037..27039,27055..27060,27088..27090,
27094..27099,27103..27111,27115..27120,27124..27126)
/locus_tag="PM3016_24"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 27165..27671
/locus_tag="PM3016_25"
/db_xref="GeneID:11881989"
CDS 27165..27671
/locus_tag="PM3016_25"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310165.1"
/db_xref="GI:379718034"
/db_xref="GeneID:11881989"
/translation="MNHMPRETWLDYIRGTLAPEERDVCDAHLAEDCASCFELYLEAL
EELAEELPEPDAASLQASVMEQWDLEHRSAAPAIVGQTGSRRHRLLWLQHPLFHYGAA
AAITMLLMSSGAFQFLLGSVSAAVEQAPPDSTRPASETEPYSVRWMEKTVGLLDRIEP
KRERGDNR"
gene 27668..28831
/locus_tag="PM3016_26"
/db_xref="GeneID:11881990"
CDS 27668..28831
/locus_tag="PM3016_26"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310166.1"
/db_xref="GI:379718035"
/db_xref="GeneID:11881990"
/translation="MNTTKHPMAALLLSFIPGLGHLYRGRIIKGMIYGILFFGLALLS
FLSAVIFRETELGILLCLGGIAVGLINLADMIVSLLTSSHPTRPPSSYPGRVYSEEGP
QSFQSPHANEGRTHASQDYPPAAANDRYFTVFLSLIPGLGHFHLGLMQRGLAFMAVFF
GFIVMTLFLAALTGQDDFFVFLGVLPIVWLYCMFDCVQLLKRREAGEPLLDRTFFDDF
QEWRGPGRKNRTLAAILSVFPGAGHMYLGLQKRGFQLMAGFLLAVYILDVLRLSLFMF
LIPLLWFFSFFDALQHISRWEKEELRDIPVVEWILHHQRGIGIGLLGLGIYYLFDQVL
LQVLDLWVTPETQQRIVYWFERYFQTFVVSVLLIGGGIRLLLGSRGNGQGRRM"
gene 28991..29596
/locus_tag="PM3016_27"
/db_xref="GeneID:11881991"
CDS 28991..29596
/locus_tag="PM3016_27"
/codon_start=1
/transl_table=11
/product="dedA protein"
/protein_id="YP_005310167.1"
/db_xref="GI:379718036"
/db_xref="GeneID:11881991"
/translation="METITIDTLLSYIHQFGYLALFFALWLGIVGMPIPDEVVVMTGG
MVGALHLLSPLPAFVITYVGVVSGLTLGYVLGRVMGPPVLERLRKKKSMEPYIEKSYA
MLDKYGSGTLVFSYFLPVVRHLVPYLVGINGMSYRTYALYSYLTGLLWTMVYFVLGYF
FGDSIEVISRAVTRYGWYVLALLAAGGLAVMWLRPLRQKAR"
misc_feature 28991..29593
/locus_tag="PM3016_27"
/note="Uncharacterized membrane-associated protein
[Function unknown]; Region: DedA; COG0586"
/db_xref="CDD:30931"
misc_feature 29090..29470
/locus_tag="PM3016_27"
/note="SNARE associated Golgi protein; Region:
SNARE_assoc; pfam09335"
/db_xref="CDD:204201"
gene complement(29660..30139)
/locus_tag="PM3016_28"
/db_xref="GeneID:11881992"
CDS complement(29660..30139)
/locus_tag="PM3016_28"
/codon_start=1
/transl_table=11
/product="TadA protein"
/protein_id="YP_005310168.1"
/db_xref="GI:379718037"
/db_xref="GeneID:11881992"
/translation="MEEEHVRFMRAAIEEARKAEAIREVPIGAVIVREGEIIGRGYNR
RETDKDPLAHAELIAIREASEHLDAWRLLNCRLYVTLEPCPMCAGAIVQSRIVQVVYG
THDPKAGCAGTLMNLLQEERFNHRVDVVSGILQEECGSMLTDFFRRLRGKNKPGGHQ"
misc_feature complement(29792..30067)
/locus_tag="PM3016_28"
/note="Nucleoside deaminases include adenosine, guanine
and cytosine deaminases. These enzymes are Zn dependent
and catalyze the deamination of nucleosides. The zinc ion
in the active site plays a central role in the proposed
catalytic mechanism, activating a...; Region:
nucleoside_deaminase; cd01285"
/db_xref="CDD:29828"
misc_feature complement(order(29879..29881,29888..29890,29972..29980,
30011..30013,30059..30061))
/locus_tag="PM3016_28"
/note="nucleoside/Zn binding site; other site"
/db_xref="CDD:29828"
misc_feature complement(order(29858..29863,29870..29875,29882..29887,
29957..29959,29969..29971,29984..29986))
/locus_tag="PM3016_28"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29828"
misc_feature complement(order(29879..29881,29888..29893,29972..29980))
/locus_tag="PM3016_28"
/note="catalytic motif [active]"
/db_xref="CDD:29828"
gene 30680..31390
/locus_tag="PM3016_29"
/db_xref="GeneID:11881993"
CDS 30680..31390
/locus_tag="PM3016_29"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310169.1"
/db_xref="GI:379718038"
/db_xref="GeneID:11881993"
/translation="MMKMAAARSAYSLTDEKYRSPSGILLHSRTVVEKANFVSTGILS
FAEGDILEIEMSEYKVFDLGDTVKLTVYSPGGIYMFESTVVAKDHGALIIINPPQNRN
LFAEKRENPRITVKEEGRVLSVQMADGTDRLLEDKIELSVHNISISGIGFTIREDLGI
GKGAVVHLHLQLGFEMPCRAEIARTEKTENGEFYYGAQFIDLAKDKANSLRAYVLKKQ
VETHFRTKREESAKRIFK"
misc_feature 30995..31327
/locus_tag="PM3016_29"
/note="PilZ domain; Region: PilZ; pfam07238"
/db_xref="CDD:203600"
gene 31519..32244
/locus_tag="PM3016_30"
/db_xref="GeneID:11881994"
CDS 31519..32244
/locus_tag="PM3016_30"
/codon_start=1
/transl_table=11
/product="N-acetylmuramoyl-L-alanine amidase CwlA"
/protein_id="YP_005310170.1"
/db_xref="GI:379718039"
/db_xref="GeneID:11881994"
/translation="MAFLMKYEIIPRYLTGPSQRRPKLPLARCRFMVAHDTGNPSSTA
AANVAYYERTRNDMASSAHLFVDDQQIIECIPLLTGAAEKAYHVIYNVTSDNARYGTD
ANDTAGAVELCYGGSINLTESYKRYVWVFAYACYRYGLNPLTDITGHYILDPARRSDP
QTPLRLLGKSFANFVQDVADELKACTIVTPPKPQVLISPEDANKLISFLSAIYYAAED
EESRTEVNRLANELRRISGQPEE"
misc_feature 31606..31998
/locus_tag="PM3016_30"
/note="Peptidoglycan recognition proteins (PGRPs) are
pattern recognition receptors that bind, and in certain
cases, hydrolyze peptidoglycans (PGNs) of bacterial cell
walls. PGRPs have been divided into three classes: short
PGRPs (PGRP-S), that are small (20...; Region: PGRP;
cd06583"
/db_xref="CDD:133475"
misc_feature order(31621..31623,31702..31704,31963..31965,31987..31989,
31993..31995)
/locus_tag="PM3016_30"
/note="amidase catalytic site [active]"
/db_xref="CDD:133475"
misc_feature order(31621..31623,31963..31965,31993..31995)
/locus_tag="PM3016_30"
/note="Zn binding residues [ion binding]; other site"
/db_xref="CDD:133475"
misc_feature order(31624..31629,31696..31698,31702..31704,31741..31743,
31774..31779,31828..31830,31963..31965,31975..31977,
31987..31995)
/locus_tag="PM3016_30"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133475"
gene 32425..33525
/locus_tag="PM3016_31"
/db_xref="GeneID:11881995"
CDS 32425..33525
/locus_tag="PM3016_31"
/codon_start=1
/transl_table=11
/product="protein EngD"
/protein_id="YP_005310171.1"
/db_xref="GI:379718040"
/db_xref="GeneID:11881995"
/translation="MALKAGIVGLPNVGKSTLFNAITQAGAESANYPFCTIDPNVGVV
EVPDERLEGLAKIVTPNRIVPTAFEFIDIAGIVKGASKGEGLGNKFLSHIREVDAIVH
VVRCFQDENITHVSGKVDPISDIETINLELILADVDSVDRKIERSRKNLKGGDKKVAQ
EVETLEKVKEALYNDKPARSLDLTDEEKLLIRDLHLLTMKPVLYAANVSEAEVANSDD
NPYVQKVREYAAAENAEVVPISAKVEAEIAELEGEDKAMFLEELGLQESGLGRLIKAA
YKLLGLYTYFTAGVQEVRAWTIRKGMKAPQAAGVIHTDFERGFIRAEVVGYEDLTNSG
SMNAAKEKGLLRLEGKEYVVQDGDVMHFRFNV"
misc_feature 32425..33522
/locus_tag="PM3016_31"
/note="GTP-binding protein YchF; Reviewed; Region:
PRK09601"
/db_xref="CDD:181981"
misc_feature 32437..33264
/locus_tag="PM3016_31"
/note="YchF GTPase; Region: YchF; cd01900"
/db_xref="CDD:206687"
misc_feature 32449..32472
/locus_tag="PM3016_31"
/note="G1 box; other site"
/db_xref="CDD:206687"
misc_feature order(32458..32460,32464..32475,33043..33048,33052..33054,
33142..33150)
/locus_tag="PM3016_31"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206687"
misc_feature 32518..32541
/locus_tag="PM3016_31"
/note="Switch I region; other site"
/db_xref="CDD:206687"
misc_feature 32530..32532
/locus_tag="PM3016_31"
/note="G2 box; other site"
/db_xref="CDD:206687"
misc_feature order(32635..32664,32683..32712)
/locus_tag="PM3016_31"
/note="Switch II region; other site"
/db_xref="CDD:206687"
misc_feature 32638..32649
/locus_tag="PM3016_31"
/note="G3 box; other site"
/db_xref="CDD:206687"
misc_feature 33043..33054
/locus_tag="PM3016_31"
/note="G4 box; other site"
/db_xref="CDD:206687"
misc_feature 33142..33150
/locus_tag="PM3016_31"
/note="G5 box; other site"
/db_xref="CDD:206687"
misc_feature 33268..33516
/locus_tag="PM3016_31"
/note="TGS_YchF_C: This subfamily represents TGS
domain-containing YchF GTP-binding protein, a universally
conserved GTPase whose function is unknown. The N-terminal
domain of the YchF protein belongs to the Obg-like family
of GTPases, and some members of the...; Region:
TGS_YchF_C; cd04867"
/db_xref="CDD:133440"
gene 33675..34754
/locus_tag="PM3016_32"
/db_xref="GeneID:11881996"
CDS 33675..34754
/locus_tag="PM3016_32"
/codon_start=1
/transl_table=11
/product="protein PrfA"
/protein_id="YP_005310172.1"
/db_xref="GI:379718041"
/db_xref="GeneID:11881996"
/translation="MLDRLQALADRYEKLSELLCDPDVAGDSKKLREFSKEQSDLQET
YDAYMEYKSVSEQYESARAMQNEKLDDEMKELVKMELEELTERKTELEERIKVLMMPK
DPNDDKNVIVEIRGAAGGDEAALFAADLYRMYSKYADTQGWKIDVMDVSMNDLGGFKE
IIFMVNGKGAYSKLKFESGAHRVQRIPATESGGRIHTSTSTVSVMPEMEEFDIEIHDN
DIRVDTFCSSGAGGQSVNTTKSAVRVTHIPTGIVATCQDGKSQNSNKEKALQVLRARI
FDKAQQEEMEKYGAERKSKVGTGDRSERIRTYNFPQSRVTDHRIGLTLHRLDAIMNGD
MEEIVSALTIAAQTEQMEKGEYAGA"
misc_feature 33675..34730
/locus_tag="PM3016_32"
/note="peptide chain release factor 1; Validated; Region:
prfA; PRK00591"
/db_xref="CDD:179074"
misc_feature <33957..34205
/locus_tag="PM3016_32"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:198005"
misc_feature 34290..34631
/locus_tag="PM3016_32"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 34747..35655
/locus_tag="PM3016_33"
/db_xref="GeneID:11881997"
CDS 34747..35655
/locus_tag="PM3016_33"
/codon_start=1
/transl_table=11
/product="HemK family modification methylase"
/protein_id="YP_005310173.1"
/db_xref="GI:379718042"
/db_xref="GeneID:11881997"
/translation="MPDERRRTIREAYTEASSFLAAQGVREPESNSELLLAYVLGESR
SGLLLRWPEPFPPEREALWQRVLERKAAGEPAQYIIGEQEFYGLPYTVTPAVLIPRPE
TELLVEAVIRLGRQLWMGPGEGGEGPLAADVGTGSGAIAVTLASQCPSWRLMASDISR
AALDVAQANAVRHGAEERITFVEGDLLLPWIEQGIALDLVVSNPPYIPDSDEAGLQPE
VRLYEPRTALYGGPDGLEPYRRLTQQLLELPAVPRLVGFEVGQGQAPEVRRLLEAAAD
WDGVLIVPDLAGIERHVVAYRSGRGS"
misc_feature 34768..35637
/locus_tag="PM3016_33"
/note="N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional; Region: PRK09328"
/db_xref="CDD:181780"
misc_feature 35140..>35370
/locus_tag="PM3016_33"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(35143..35163,35215..35220,35296..35304,35353..35355)
/locus_tag="PM3016_33"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 35820..36569
/locus_tag="PM3016_34"
/db_xref="GeneID:11881998"
CDS 35820..36569
/locus_tag="PM3016_34"
/codon_start=1
/transl_table=11
/product="stage II sporulation protein R"
/protein_id="YP_005310174.1"
/db_xref="GI:379718043"
/db_xref="GeneID:11881998"
/translation="MVKRVSWKRYGYLLFAFMVMMMCWESNRSNVMLVTAAAAETGGE
ANGQSIPQESIRLRILANSDAPADQWIKREVRDAIVAEMEGWVEQPKGIEEAREAVRA
HLPELSEVVGSTLRKNGFDYAYNVELGTVPFPTKMYGNEVYPAGEYEALRVSIGEAEG
QNWWCVLFPPLCFIDSEMVVKPENTAQAAGAEEAPENNADEASAESRKGAKPAEAEKK
AEGERTAATAAKPEVRFFLWDLLQKIGTWFA"
misc_feature 35967..36344
/locus_tag="PM3016_34"
/note="Stage II sporulation protein R (spore_II_R);
Region: Spore_II_R; pfam09551"
/db_xref="CDD:150280"
gene 36662..37732
/locus_tag="PM3016_35"
/db_xref="GeneID:11881999"
CDS 36662..37732
/locus_tag="PM3016_35"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310175.1"
/db_xref="GI:379718044"
/db_xref="GeneID:11881999"
/translation="MTTKQWKVTAEEAAPETLAEPASLLKKGGTVAFPTETVYGLGAD
ARSTEAVAAVFAAKGRPSDNPLIVHIADRSQLEELTAPPEEAVSRLLDAFWPGPLTVV
LPARPGVLSPLVTAGLSTVGVRMPDHPVALALIAAAGCPVAAPSANRSGRPSPTRASH
VLEDLGGRIGGVVDGGEAGVGLESTVAEYAGGALHILRPGGVTQAQLQAVLPDVPVVG
ASAGLEAESLPEPEAPRAPGMKYAHYAPQGAMLLVQGEDPAAVQERIRAELDAAKQRG
ERTGVFTYAEHAHLFAADHVAVCGRLDDPASVARELYAALRSFDEAGVSFIAAEACPA
AGIGQAVMNRLRKASGGNIRTV"
misc_feature 36728..37261
/locus_tag="PM3016_35"
/note="Telomere recombination; Region: Sua5_yciO_yrdC;
pfam01300"
/db_xref="CDD:201719"
misc_feature 37265..37711
/locus_tag="PM3016_35"
/note="Putative GTP-binding controlling metal-binding;
Region: SUA5; pfam03481"
/db_xref="CDD:202661"
gene 37834..38397
/locus_tag="PM3016_36"
/db_xref="GeneID:11882000"
CDS 37834..38397
/locus_tag="PM3016_36"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310176.1"
/db_xref="GI:379718045"
/db_xref="GeneID:11882000"
/translation="MAWSSPLMWAQFVSIGLMALALGLDALSLGLGLGMKGIRKLDIL
KVSAVTALFHVLMPLAGMWMGGYISVLLGKVATMCGGLLLLLLGGHMIYSSLHPGEER
SYDHRSFVGLLLFSLSVSIDAFSVGVSLGMFAGDVLLTVGMFGAAGGLMSVIGLLLGR
HVGEWIGEYGEMLGGVILMAFGLKFLL"
misc_feature 37945..38394
/locus_tag="PM3016_36"
/note="Predicted membrane protein [Function unknown];
Region: COG1971"
/db_xref="CDD:32154"
misc_feature 38194..38379
/locus_tag="PM3016_36"
/note="Domain of unknown function DUF; Region: DUF204;
pfam02659"
/db_xref="CDD:202332"
gene 38531..39114
/locus_tag="PM3016_37"
/note="protein-tyrosine-phosphatase"
/pseudo
/db_xref="GeneID:11882001"
gene 39401..39859
/locus_tag="PM3016_39"
/db_xref="GeneID:11882002"
CDS 39401..39859
/locus_tag="PM3016_39"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310177.1"
/db_xref="GI:379718046"
/db_xref="GeneID:11882002"
/translation="MKIAMGADHAGYRLKDELKPFLESLGHEVEDFGCSCGDSVDYPD
YAIEVCEKVVSGEADKGILICGTGIGMTIAANKVPGIRCALVHDLFTAKATREHNDTN
VLTLGERVVGPGVAQEIVKIWLETDFSQGERHQKRLDKVRAIEEKYALHP"
misc_feature 39401..39841
/locus_tag="PM3016_39"
/note="ribose-5-phosphate isomerase B; Provisional;
Region: PRK05571"
/db_xref="CDD:180136"
gene 39901..40518
/locus_tag="PM3016_40"
/db_xref="GeneID:11882003"
CDS 39901..40518
/locus_tag="PM3016_40"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310178.1"
/db_xref="GI:379718047"
/db_xref="GeneID:11882003"
/translation="MTVEHSAVQEDGGASLLTGLRPQVEQILRELVQAGGVKPGQLLV
IGTSTSEVLGHRIGTAGSGEVAQRIFEAVEAVREEAGFYPVYQCCEHLNRALVLEREA
AERYGLEEVSVVPAPRAGGSMAAHAFRQLPQAVVVETVQAHAGIDIGDTMIGMHLKRV
AVPVRPTIRQLGDAHVTMAFTRPKLIGGARAIYTAEAPQVNDNCS"
misc_feature 39949..40494
/locus_tag="PM3016_40"
/note="hypothetical protein; Provisional; Region:
PRK13690"
/db_xref="CDD:184247"
gene 40625..41872
/locus_tag="PM3016_41"
/db_xref="GeneID:11882004"
CDS 40625..41872
/locus_tag="PM3016_41"
/codon_start=1
/transl_table=11
/product="GlyA protein"
/protein_id="YP_005310179.1"
/db_xref="GI:379718048"
/db_xref="GeneID:11882004"
/translation="MEQLRKQDPKIVEAMNLELGRQRDKIELIASENFVSEAVLQAMG
TVLTNKYAEGYPHKRYYGGCEYVDIVEDIARDRAKELFGAEHANVQPHSGAQANMAVY
LAAVKPGETILGMNLAHGGHLTHGSPVNASGILYNFVAYGVSEKDSRIDYDDVRKAAF
KHKPRLIVAGASAYPRTIDFEALASIANDVGALFMVDMAHIAGLVAAGLHPNPVPYAH
FVTTTTHKTLRGPRGGMILCRKPWAAAIDKAVFPGSQGGPLMHVIAAKAVAFGEALQP
EFKTYAQNVVDNAKALAEALTAEGINLVSGGTDNHLMLIDLRNLNISGKDAEHLLDEV
GVTVNKNAIPFDPTSPFVTSGIRVGTPAATSRGMDQEAMKTIAKIISLTLKNPSDEAV
HEKVRGMVKDLTAQFPLYAGLGY"
misc_feature 40625..41863
/locus_tag="PM3016_41"
/note="serine hydroxymethyltransferase; Reviewed; Region:
glyA; PRK00011"
/db_xref="CDD:178792"
misc_feature 40640..41833
/locus_tag="PM3016_41"
/note="Serine-glycine hydroxymethyltransferase (SHMT).
This family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). SHMT
carries out interconversion of serine and glycine; it
catalyzes the transfer of hydroxymethyl...; Region: SHMT;
cd00378"
/db_xref="CDD:99733"
misc_feature order(40646..40648,40652..40654,40673..40678,40703..40705,
40718..40720,40772..40774,40826..40831,40853..40855,
40898..40900,40919..40921,41024..41029,41399..41401,
41453..41455)
/locus_tag="PM3016_41"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:99733"
misc_feature order(40715..40717,40775..40777,40805..40807,40904..40909,
40988..40990,41138..41140,41213..41215,41222..41224,
41297..41302,41318..41320,41693..41695)
/locus_tag="PM3016_41"
/note="glycine-pyridoxal phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99733"
misc_feature order(40715..40717,40988..40990,41300..41302,41693..41695)
/locus_tag="PM3016_41"
/note="active site"
/db_xref="CDD:99733"
misc_feature order(40781..40783,40802..40804,40973..40975,40985..40987,
40991..40993,41375..41377,41645..41647)
/locus_tag="PM3016_41"
/note="folate binding site [chemical binding]; other site"
/db_xref="CDD:99733"
gene 42080..42709
/locus_tag="PM3016_42"
/db_xref="GeneID:11882005"
CDS 42080..42709
/locus_tag="PM3016_42"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310180.1"
/db_xref="GI:379718049"
/db_xref="GeneID:11882005"
/translation="MGKVYICDHPLIQHKLTYIRDENTTTKDFRELVDEVATLMAYEI
TRDIPLEKVQVKTPVTMAECRVISGRMLGLIPILRAGLGMVDGILKLVPAAKVGHIGL
YRDPETLEPVEYYAKLPTDVLERELIVIDPMLATGGSANAAITALKKRGCTQMKLMCL
IAAPEGVQAVQEAHPDVDLYVAAIDDHLNDHGYIVPGLGDAGDRLFGTK"
misc_feature 42299..42631
/locus_tag="PM3016_42"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(42311..42313,42317..42319,42470..42478,42482..42496,
42566..42568)
/locus_tag="PM3016_42"
/note="active site"
/db_xref="CDD:206754"
gene 42745..43887
/locus_tag="PM3016_43"
/db_xref="GeneID:11882006"
CDS 42745..43887
/locus_tag="PM3016_43"
/codon_start=1
/transl_table=11
/product="protein MnaA"
/protein_id="YP_005310181.1"
/db_xref="GI:379718050"
/db_xref="GeneID:11882006"
/translation="MKKTKVITIFGTRPEAIKMAPLVKELEKHPDHIESLVCVTAQHR
QMLDQVLEIFKIKPDYDLDVMKDRQTLNEITIRVLQGLDPVFQKEKPDLILVHGDTLT
TFLASYAAFLQQIQVGHVEAGLRTWNKMSPYPEEMNRQLTGVLADLHFAPTNWSAGNL
RKENKPEERIFVTGNTVTDVFQYTVQDEFQHEVLDWAKGKRLVMMTAHRRESQGEPHR
QIFRAVRRLADAFDDIAIVYAVHPSPAVKEPAYEMLSGHERIKLIEPLDVFEFHNFYR
HAHLILTDSGGLQEEAPSFGVPVLVLRETTERPEGIEAGTLELVGTDEEKVFSRASAL
LSDQVLYERMSRSANPYGDGKASERIADAILYHFGHKPERPLPFQP"
misc_feature 42757..43848
/locus_tag="PM3016_43"
/note="UDP-N-acetylglucosamine 2-epimerase; Region: wecB;
TIGR00236"
/db_xref="CDD:188036"
misc_feature 42757..43839
/locus_tag="PM3016_43"
/note="Bacterial members of the UDP-N-Acetylglucosamine
(GlcNAc) 2-Epimerase family are known to catalyze the
reversible interconversion of UDP-GlcNAc and
UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to
produce an activated form of ManNAc residues; Region:
GT1_UDP-GlcNAc_2-Epimerase; cd03786"
/db_xref="CDD:99962"
misc_feature order(42781..42783,43540..43542,43546..43548,43555..43557,
43603..43605,43615..43617)
/locus_tag="PM3016_43"
/note="active site"
/db_xref="CDD:99962"
misc_feature order(42961..42963,42967..42972,42991..42993,43075..43080,
43084..43086,43090..43092,43141..43143,43153..43155,
43228..43230)
/locus_tag="PM3016_43"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99962"
gene 44062..44298
/locus_tag="PM3016_44"
/db_xref="GeneID:11882007"
CDS 44062..44298
/locus_tag="PM3016_44"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310182.1"
/db_xref="GI:379718051"
/db_xref="GeneID:11882007"
/translation="MKRQNSNDSPWRALALLGGIGVDLGVCMAAGYWVGDLISEWQGG
EPLWIVGGMMTGFILGIASIYLIIRNYMRGGPNG"
misc_feature 44104..44268
/locus_tag="PM3016_44"
/note="Putative F0F1-ATPase subunit (ATPase_gene1);
Region: ATPase_gene1; cl09754"
/db_xref="CDD:209074"
gene 44695..45462
/locus_tag="PM3016_45"
/db_xref="GeneID:11882008"
CDS 44695..45462
/locus_tag="PM3016_45"
/codon_start=1
/transl_table=11
/product="ATP synthase F0 subunit A"
/protein_id="YP_005310183.1"
/db_xref="GI:379718052"
/db_xref="GeneID:11882008"
/translation="MHELPIVNWLGLNWDLSTIITVTVTCLIVLILAIAGTRNLSVHN
PGKMQNFLEWLVEFVQNIIAGSMDMKKGKPFLMLGITLIMFIFVGNMLGLPLYIATEV
TGPLPQFGITAAEYEAAHAANKHLSISWWKSPTADLSVTMGLALMVIVMVHFLGLTKN
TKHYLHHYVEPFAVMFPLNIVKEVSKLLTLGMRLFGNIYAGEVLIAVILMAGIGGIVP
LIIWQGFSVFVGAIQAFVFTTLTMVYISQAIVHEEKH"
misc_feature 44791..45453
/locus_tag="PM3016_45"
/note="F0F1 ATP synthase subunit A; Validated; Region:
PRK05815"
/db_xref="CDD:180273"
gene 45562..45792
/locus_tag="PM3016_46"
/db_xref="GeneID:11882009"
CDS 45562..45792
/locus_tag="PM3016_46"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit C"
/protein_id="YP_005310184.1"
/db_xref="GI:379718053"
/db_xref="GeneID:11882009"
/translation="MEGMSFLAAAIAIGLGALGAGIGNGLIVSKTVDGIARQPELKGT
LQTVMFIGVGLVEAIPIIAVVFALLFTFVFAG"
misc_feature <45643..45747
/locus_tag="PM3016_46"
/note="F0F1 ATP synthase subunit C; Validated; Region:
PRK06876"
/db_xref="CDD:180739"
gene 45905..46390
/locus_tag="PM3016_47"
/db_xref="GeneID:11882010"
CDS 45905..46390
/locus_tag="PM3016_47"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310185.1"
/db_xref="GI:379718054"
/db_xref="GeneID:11882010"
/translation="MHFELTSFIFAIVSFAILMWLISKYAFGPLMGIMEQRRQLVLDQ
MNSAEQNRKQADSLLAEQKAALEQVRSEAKQIMEQARVTSGKQAEDIIAQAKAEAGRL
KEEALRDIENEKNLAVAALRSQVSAMSVLIASKIIEKQIDEKSQEQLVEHYLKEVGGN
Q"
misc_feature 45905..46384
/locus_tag="PM3016_47"
/note="F0F1-type ATP synthase, subunit b [Energy
production and conversion]; Region: AtpF; COG0711"
/db_xref="CDD:31055"
misc_feature 45926..46375
/locus_tag="PM3016_47"
/note="F0F1 ATP synthase subunit B; Validated; Region:
PRK05759"
/db_xref="CDD:180240"
gene 46387..46938
/locus_tag="PM3016_48"
/db_xref="GeneID:11882011"
CDS 46387..46938
/locus_tag="PM3016_48"
/codon_start=1
/transl_table=11
/product="F0F1 ATP synthase subunit delta"
/protein_id="YP_005310186.1"
/db_xref="GI:379718055"
/db_xref="GeneID:11882011"
/translation="MSQDLIAAKRYAKALFEVAKDAGRIAEVEQELETVVAVFKENPD
LSKLIKHPGIDAGVKIGLIKQIFGAGVSESVLNTLQLLIERRREEALEAFVRAYSKIA
GESLGQANATVYSPVELSAEELSNIASTFAKMTGKQIRVSTVLDKSLLGGIQVRIGDR
LYDGSLSGKLQRLERALNQSQAL"
misc_feature 46387..46917
/locus_tag="PM3016_48"
/note="F0F1 ATP synthase subunit delta; Validated; Region:
PRK05758"
/db_xref="CDD:180239"
misc_feature 46405..46917
/locus_tag="PM3016_48"
/note="ATP synthase delta (OSCP) subunit; Region: OSCP;
pfam00213"
/db_xref="CDD:189453"
gene 46955..48469
/locus_tag="PM3016_49"
/db_xref="GeneID:11882012"
CDS 46955..48469
/locus_tag="PM3016_49"
/codon_start=1
/transl_table=11
/product="protein AtpA"
/protein_id="YP_005310187.1"
/db_xref="GI:379718056"
/db_xref="GeneID:11882012"
/translation="MSIKPEEISTLIRQQIENYKSEIQVVDVGTVIQVGDGIARAHGL
ENVMAGELLEFSNGVLGYAFNLEESNVGIVILGPYTDIREGDPVKRTGRIMEVPVGEA
LLGRVVNALGQPIDGKGPINTTHSRPVESPAPGVMARKSVHEPMQTGIKAIDAMIPVG
RGQRELIIGDRQTGKTSIAVDTIINQKGSGVKCIYVAVGQKQSTVVALVETLRRAGAL
DYTIVVSASASEPSPMLWLAPYAGCAMGEYFMYKGEHVLIVYDDLSKQAAAYRELSLL
LRRPPGREAYPGDVFYLHSRLLERSAKLSDELGAGSMTALPFIETQAGDVSAYIPTNV
ISITDGQIFLESDLFYSGQRPAVNVGISVSRVGGSAQTKAMKKVAGTLRLDLAQYREL
AAFAQFGSDLDRATQTRLNRGVRTLELLKQGVNQPLPVEKQVAAIYVVTRGHIDDLPV
QDVRRFEAEFLAYLDSNRPEILASIRDTKDLTSDNEKALVDAIGQFKKGFAPSA"
misc_feature 46955..48460
/locus_tag="PM3016_49"
/note="F0F1 ATP synthase subunit alpha; Validated; Region:
PRK09281"
/db_xref="CDD:181753"
misc_feature 47036..47230
/locus_tag="PM3016_49"
/note="ATP synthase alpha/beta family, beta-barrel domain;
Region: ATP-synt_ab_N; pfam02874"
/db_xref="CDD:145823"
misc_feature 47234..48055
/locus_tag="PM3016_49"
/note="F1 ATP synthase alpha, central domain. The F-ATPase
is found in bacterial plasma membranes, mitochondrial
inner membranes and in chloroplast thylakoid membranes. It
has also been found in the archaea Methanosarcina barkeri.
It uses a proton gradient to...; Region: F1_ATPase_alpha;
cd01132"
/db_xref="CDD:29998"
misc_feature order(47297..47302,47348..47353,47357..47362,47369..47371,
47375..47377,47465..47470,47555..47566,47570..47575,
47582..47584,47765..47770,47786..47794,47798..47803,
47816..47818,47828..47830,47837..47839,47849..47851,
47960..47962,47969..47971,48002..48007,48014..48016,
48047..48049)
/locus_tag="PM3016_49"
/note="beta subunit interaction interface [polypeptide
binding]; other site"
/db_xref="CDD:29998"
misc_feature 47459..47482
/locus_tag="PM3016_49"
/note="Walker A motif; other site"
/db_xref="CDD:29998"
misc_feature order(47465..47467,47477..47485,47537..47539,47552..47554,
47735..47740,47747..47749,47912..47914,47960..47962,
47999..48001,48014..48019,48047..48049)
/locus_tag="PM3016_49"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29998"
misc_feature 47723..47737
/locus_tag="PM3016_49"
/note="Walker B motif; other site"
/db_xref="CDD:29998"
misc_feature 48080..48349
/locus_tag="PM3016_49"
/note="ATP synthase alpha/beta chain, C terminal domain;
Region: ATP-synt_ab_C; pfam00306"
/db_xref="CDD:144044"
gene 48566..49423
/locus_tag="PM3016_50"
/db_xref="GeneID:11882013"
CDS 48566..49423
/locus_tag="PM3016_50"
/codon_start=1
/transl_table=11
/product="protein AtpG"
/protein_id="YP_005310188.1"
/db_xref="GI:379718057"
/db_xref="GeneID:11882013"
/translation="MAKGMREIKRSIKSKQNTKQITKAMEMVAASKLRRAQEAAEASR
PYSEKMKEVIASIAAGTKGVKHPMLQTRPIKKTGYLVITSDRGLAGGYNANVLRKVMN
VIREKHNSTNEYAIFVIGRKGRDFFSKRNIPIVEEVTGLADSPTFADVKQVAASAVAN
FEKGTYDELYLVYNEFKNAITQIPTVKRLLPLEEVSGASVSNYEYEPSPEGVLEVLLP
KYAETLIYSAVLDGKASEFGARMTAMNSATKNATKMISTLTLQYNRARQASITQEISE
IVAGANAQS"
misc_feature 48566..49417
/locus_tag="PM3016_50"
/note="F0F1 ATP synthase subunit gamma; Validated; Region:
PRK05621"
/db_xref="CDD:180168"
misc_feature 48581..49414
/locus_tag="PM3016_50"
/note="F0F1 ATP synthase subunit gamma; Provisional;
Region: PRK13422"
/db_xref="CDD:184046"
gene 49580..50986
/locus_tag="PM3016_51"
/db_xref="GeneID:11882014"
CDS 49580..50986
/locus_tag="PM3016_51"
/codon_start=1
/transl_table=11
/product="protein AtpD"
/protein_id="YP_005310189.1"
/db_xref="GI:379718058"
/db_xref="GeneID:11882014"
/translation="MSKGRVVNITGPVVDIEFERGQLPEILNAIKIQRKAQSAGEQDI
NLTVETAVHLGDNMVRCIAMSSTDGLVRGVEAVDTGAPISVPVGAATLGRVFNVLGEP
IDGNETVDRTLTSPIHKEAPSFENLSTQAEILETGIKVIDLMAPYAKGGKIGLFGGAG
VGKTVTMQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMSDSGVISKTAMVFGQMN
EPPGARLRVALSGLTMAEYFRDEEGKDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGY
QPTLATEMGQLQERITSTKKGSVTSIQAIYVPADDYTDPAPATAFAHLDATTNLERGI
ASKGIFPAVDPLASSSRILTPEILGEEHYQVAQGVKRILQRYKELLDIIAILGMDELS
DEDKLVVHRARRLELFLSQPLHVAEAFNGIPGVYVPVKETVRSFKEVLEGKHDNLPEP
AFHNVGTIEDAIEKAKTL"
misc_feature 49580..50983
/locus_tag="PM3016_51"
/note="F0F1 ATP synthase subunit beta; Validated; Region:
PRK09280"
/db_xref="CDD:181752"
misc_feature 49595..49819
/locus_tag="PM3016_51"
/note="ATP synthase alpha/beta family, beta-barrel domain;
Region: ATP-synt_ab_N; pfam02874"
/db_xref="CDD:145823"
misc_feature 49823..50644
/locus_tag="PM3016_51"
/note="F1 ATP synthase beta subunit, nucleotide-binding
domain. The F-ATPase is found in bacterial plasma
membranes, mitochondrial inner membranes and in
chloroplast thylakoid membranes. It has also been found in
the archaea Methanosarcina barkeri. It uses a...; Region:
F1-ATPase_beta; cd01133"
/db_xref="CDD:29999"
misc_feature order(49892..49894,49943..49945,49949..49954,49958..49960,
49964..49966,50147..50155,50162..50164,50228..50236,
50249..50251,50342..50344,50351..50353,50363..50365,
50381..50389,50393..50398,50411..50413,50423..50425,
50444..50446,50495..50497,50504..50509,50519..50521,
50540..50542,50546..50554,50585..50590,50615..50620,
50624..50626,50630..50632)
/locus_tag="PM3016_51"
/note="alpha subunit interaction interface [polypeptide
binding]; other site"
/db_xref="CDD:29999"
misc_feature 50051..50071
/locus_tag="PM3016_51"
/note="Walker A motif; other site"
/db_xref="CDD:29999"
misc_feature order(50057..50059,50066..50074,50144..50149,50156..50158,
50330..50332,50342..50344,50594..50599)
/locus_tag="PM3016_51"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29999"
misc_feature 50318..50332
/locus_tag="PM3016_51"
/note="Walker B motif; other site"
/db_xref="CDD:29999"
misc_feature order(50588..50590,50594..50596,50612..50617)
/locus_tag="PM3016_51"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:29999"
misc_feature 50666..50983
/locus_tag="PM3016_51"
/note="ATP synthase alpha/beta chain, C terminal domain;
Region: ATP-synt_ab_C; pfam00306"
/db_xref="CDD:144044"
gene 51107..51511
/locus_tag="PM3016_52"
/db_xref="GeneID:11882015"
CDS 51107..51511
/locus_tag="PM3016_52"
/codon_start=1
/transl_table=11
/product="protein AtpC"
/protein_id="YP_005310190.1"
/db_xref="GI:379718059"
/db_xref="GeneID:11882015"
/translation="MSTFLLEIVTPERKVYAEPANMIVVKGVEGELGILPNHIPMVTP
LRIAAVTVKKQGAKDEQIAVHGGFMEVRRDKVVILAESAELPGQINLERAQAAKGRAE
QRLAAKKDQIDFKRAELALQRAMTRINVGGGQ"
misc_feature 51107..51505
/locus_tag="PM3016_52"
/note="F0F1 ATP synthase subunit epsilon; Validated;
Region: atpC; PRK00571"
/db_xref="CDD:179070"
misc_feature 51116..51355
/locus_tag="PM3016_52"
/note="ATP synthase, Delta/Epsilon chain, beta-sandwich
domain; Region: ATP-synt_DE_N; pfam02823"
/db_xref="CDD:202416"
misc_feature 51368..51496
/locus_tag="PM3016_52"
/note="ATP synthase, Delta/Epsilon chain, long alpha-helix
domain; Region: ATP-synt_DE; pfam00401"
/db_xref="CDD:201209"
gene 51908..52273
/locus_tag="PM3016_53"
/db_xref="GeneID:11882016"
CDS 51908..52273
/locus_tag="PM3016_53"
/codon_start=1
/transl_table=11
/product="protein NuoA"
/protein_id="YP_005310191.1"
/db_xref="GI:379718060"
/db_xref="GeneID:11882016"
/translation="MYFNNYVVVTIFLFLGVILPVVALTFGRLLRPHKPVEEKYTTYE
SGNEPVGEGQVRFNIRYYLFALMFVIFDVETVFLYPWAVAYKQLGLFALVEMCIFVGL
LIIGLLYAWKKKVLQWTSI"
misc_feature 51908..52261
/locus_tag="PM3016_53"
/note="NADH dehydrogenase subunit A; Validated; Region:
PRK07756"
/db_xref="CDD:169084"
gene 52258..52776
/locus_tag="PM3016_54"
/db_xref="GeneID:11882017"
CDS 52258..52776
/locus_tag="PM3016_54"
/codon_start=1
/transl_table=11
/product="protein NuoB"
/protein_id="YP_005310192.1"
/db_xref="GI:379718061"
/db_xref="GeneID:11882017"
/translation="MDFNLENITPEEREELDRNVFMTTLEQIKAWARSNSLWPLTFGL
ACCAIEMMGTGASHYDLDRFGVIFRTSPRQSDVMIVAGTVTKKMAPLLRRLYEQMPEP
KWVIAMGSCATAGGPYVKSYAVVKGVDQVVPVDVYIPGCPPNPAALIYGINKLQEKIR
YEAKTGKQVTSR"
misc_feature 52258..52761
/locus_tag="PM3016_54"
/note="NADH dehydrogenase subunit B; Validated; Region:
PRK06411"
/db_xref="CDD:180557"
misc_feature 52312..52743
/locus_tag="PM3016_54"
/note="NADH-quinone oxidoreductase, B subunit; Region:
nuoB_fam; TIGR01957"
/db_xref="CDD:162625"
gene 52773..53930
/locus_tag="PM3016_55"
/db_xref="GeneID:11882018"
CDS 52773..53930
/locus_tag="PM3016_55"
/codon_start=1
/transl_table=11
/product="protein NuoC"
/protein_id="YP_005310193.1"
/db_xref="GI:379718062"
/db_xref="GeneID:11882018"
/translation="MSDEEKKAKDGDTPERKDDRGLGFTSEGGGFITAEDTAGNTKVG
DSAGGGEGEAQNSGKPGTVDPHSEARTFGEPEEGEERQGNTTPGVKAPLMSGEPRIAE
GAALAKAGGAGEPPGGYADVPKAEGKEPEGGAAEAPKSAADAPNSAADTEREAKVKAA
AEARAARLAAKAAQTAEAGDAPAAERAAPTDAEKEAKAKAAAETRAARASARAAKPEG
AEPEAPKEPSPKQPLLDRLTAILKEFREGIVEDAVVNEKGGHIPTVYIKAEAWPETAD
MLRTHPELGLHYLRNVSGVDMETHMEVVYHFISLEHKQDYCFKVKTDRENPSIPSITP
IFPTADWNEREIYDLFGIDFPGHPDLRRIMMADDWVGHPLRKDYEPIDPEV"
misc_feature 53556..53909
/locus_tag="PM3016_55"
/note="Respiratory-chain NADH dehydrogenase, 30 Kd
subunit; Region: Complex1_30kDa; cl16917"
/db_xref="CDD:211513"
gene 53937..55040
/locus_tag="PM3016_56"
/db_xref="GeneID:11882019"
CDS 53937..55040
/locus_tag="PM3016_56"
/codon_start=1
/transl_table=11
/product="protein NuoD"
/protein_id="YP_005310194.1"
/db_xref="GI:379718063"
/db_xref="GeneID:11882019"
/translation="MAIRTEELLLNVGPQHPSTHGVFRIVVKLDGEIITEAIPVMGYL
HRGTEKLAENLTYTQIIPYTDRMDYVSAMTNNYVLVHAVEKLMGLEIPERAEFMRLIV
MELQRIASHMVWWGTYLLDIGAMSPFLYAFRDREIIIDLFNELCGARLTYNYMRVGGV
KWDAPEGWIQKVRDFIPYMRGKLDEYNELVSGNEIFLARIKGIGKYDAETAIAYGLSG
ANLRCTGVDWDIRKAQPYSLYSRFEFDVPTSTVGDCYARYLLRLEEIRQSLRILEQAL
EQFPEEGEIMGKVPRVLRPAEGEVYAAIESPRGEIGVHLISKGKDKPYRLKFRRPSFV
NLQILPKLLVGETMTNLITILGGIDIVVGEVDC"
misc_feature 53943..55037
/locus_tag="PM3016_56"
/note="NADH dehydrogenase subunit D; Provisional; Region:
PRK12322"
/db_xref="CDD:183437"
misc_feature 54297..55034
/locus_tag="PM3016_56"
/note="Respiratory-chain NADH dehydrogenase, 49 Kd
subunit; Region: Complex1_49kDa; pfam00346"
/db_xref="CDD:144077"
gene 55040..56047
/locus_tag="PM3016_57"
/db_xref="GeneID:11882020"
CDS 55040..56047
/locus_tag="PM3016_57"
/codon_start=1
/transl_table=11
/product="protein NuoH"
/protein_id="YP_005310195.1"
/db_xref="GI:379718064"
/db_xref="GeneID:11882020"
/translation="MPELLQESLTFTNFMIFLAWGVVMLLVVLGFVTYAIYFERKVIG
WMQLRIGPNRVGPLGLLQSVADVTKLLIKEDTIPRKAERELFILAPVITFIPAFTVVA
TIPFTERLISSSLNVGVLFYVALSGISTIGIVLGGWASNNKYALLGGMRSAAQMISYE
IPLVISIVGIIMMTGSMNLNTIVEGQAGGFWHWNFLPQIIGFGVFAIAAVSELNRTPF
DLPEAESELVAGYHVEYSGFRFAFFMLAEYVYVFAIAGLTTTLFLGGWHAPLPFLEFI
PGIVWFLLKFSFIVFFLFWLRATLPRVRVDQLMGLGWKVLLPLALINIFVTALYMAIA
M"
misc_feature 55055..56023
/locus_tag="PM3016_57"
/note="NADH:ubiquinone oxidoreductase subunit H;
Provisional; Region: PRK06076"
/db_xref="CDD:180386"
gene 56097..56540
/locus_tag="PM3016_58"
/db_xref="GeneID:11882021"
CDS 56097..56540
/locus_tag="PM3016_58"
/codon_start=1
/transl_table=11
/product="protein NuoI"
/protein_id="YP_005310196.1"
/db_xref="GI:379718065"
/db_xref="GeneID:11882021"
/translation="MKGIVKGLGVTLKSMTQKKVTYAYPDVPLNMPDRFRGIQHFDPE
KCIVCNQCARICPTECINLIGKPNPDPEKKGKVIDTYDINFEICILCDLCTEVCPTEA
IVMTNNFELSTYSRDDLFKNLQWLNENNTNVRKENNSALPKGGAK"
misc_feature 56115..56474
/locus_tag="PM3016_58"
/note="NADH-quinone oxidoreductase, chain I; Region: NuoI;
TIGR01971"
/db_xref="CDD:162631"
misc_feature 56217..56279
/locus_tag="PM3016_58"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:200947"
misc_feature 56337..56405
/locus_tag="PM3016_58"
/note="4Fe-4S binding domain; Region: Fer4; pfam00037"
/db_xref="CDD:200947"
gene 56541..57068
/locus_tag="PM3016_59"
/db_xref="GeneID:11882022"
CDS 56541..57068
/locus_tag="PM3016_59"
/codon_start=1
/transl_table=11
/product="protein NuoJ"
/protein_id="YP_005310197.1"
/db_xref="GI:379718066"
/db_xref="GeneID:11882022"
/translation="MFENMTEFLSSGENIAFFFCALLAIGGAIFMISFTKVVHMVLAL
ALTFISMAGLYIVLEAEFVAVVQILIYAGAISILMIFGIMMTKHTKEEEEEPKRPWHQ
VLLFIGAAGLFGVIFYAIQQSEIPSGQFPQVADNTLEIGKLLFSAHVIPFELMSVLLT
VAFIGAIVVAKREED"
misc_feature 56577..56807
/locus_tag="PM3016_59"
/note="NADH dehydrogenase subunit J; Provisional; Region:
PRK06433"
/db_xref="CDD:180562"
misc_feature 56580..57062
/locus_tag="PM3016_59"
/note="NADH dehydrogenase subunit 6; Region: ndhG;
CHL00016"
/db_xref="CDD:176959"
misc_feature <56919..57062
/locus_tag="PM3016_59"
/note="NADH dehydrogenase subunit J; Provisional; Region:
PRK06439"
/db_xref="CDD:102378"
gene 57074..57391
/locus_tag="PM3016_60"
/db_xref="GeneID:11882023"
CDS 57074..57391
/locus_tag="PM3016_60"
/codon_start=1
/transl_table=11
/product="protein NuoK"
/protein_id="YP_005310198.1"
/db_xref="GI:379718067"
/db_xref="GeneID:11882023"
/translation="MGATGLATPYLTLAAILFCIGLYGALSKKNAVIVLLSIELMLNS
VNLNLVAFSKYGVKPGLTGQMFSLFNITVAAAEAAVGIAILIALYRNKGTTDVNEMDS
MKR"
misc_feature 57101..57385
/locus_tag="PM3016_60"
/note="NADH:ubiquinone oxidoreductase subunit K;
Validated; Region: PRK05715"
/db_xref="CDD:180218"
gene 57450..59342
/locus_tag="PM3016_61"
/db_xref="GeneID:11882024"
CDS 57450..59342
/locus_tag="PM3016_61"
/codon_start=1
/transl_table=11
/product="proton-translocating NADH-quinone oxidoreductase
subunit L"
/protein_id="YP_005310199.1"
/db_xref="GI:379718068"
/db_xref="GeneID:11882024"
/translation="MVSAYSQYAWLIPLFPLLSFLILTAAGRTLRGAGPYISIVAAFA
SFVLAVLIFWERVSGGVEDFTWNKLQWLRLGDTSLTMGFEVTNLNALMLVVVTLVSLL
VNIYSTGYMHDDERIHVFFAYIALFTFSMLGLVISENLVQLFIFWELVGVCSFLLVGF
WYFKPEARAAAKKAFIVTRVGDVGLFLGMLLLFWVMPEHSLSFSAITNAFNQGQIPEA
TATWIAILIFIGAMGKSGQFPLHTWLPDAMEGPTPISALIHAATMVAAGVYLVARTYP
IFMEAPTALTVVAAVGAFTAIFAATIGTAQNDIKRILAYSTVSQLGYMMMALGIGTSV
ALTAGIFHLFTHAFFKALLFLGAGSVIHAVHTQDIHEMGGVGRHMKVTAWTFAVGALA
LSGIFPLSGFWSKDAILTEALVQGHPVLFAVGLIAAFFTAFYMSRLFFLVFTGTSRSP
QGGHAHESPVSMTFPLMVLAVLAVAAGFVFTPFNPWLGGWLTGEAHEEHANYLVMVLS
TLAGLLGIGLGYLMYYKQSVRSDLVSGPAPGLYTLLSRKYYIDELYQLVIVRPLQGIG
SLLHLFDVYVVDGVVRLCSYAVTGAGRLGSRMQNGQVQTYGLATLLGLLILMLALAGR
RFIDAG"
misc_feature 57618..59267
/locus_tag="PM3016_61"
/note="proton-translocating NADH-quinone oxidoreductase,
chain L; Region: NDH_I_L; TIGR01974"
/db_xref="CDD:200148"
misc_feature 57858..58676
/locus_tag="PM3016_61"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 59332..60957
/locus_tag="PM3016_62"
/db_xref="GeneID:11882025"
CDS 59332..60957
/locus_tag="PM3016_62"
/codon_start=1
/transl_table=11
/product="proton-translocating NADH-quinone oxidoreductase
subunit M"
/protein_id="YP_005310200.1"
/db_xref="GI:379718069"
/db_xref="GeneID:11882025"
/translation="MPDNLPVLSLITFSPLIGVLLLLFIPKTQGQWIKTVAVLTTVVP
LLLSGWLYYDFNANLEGMQFKEEVPWILVPLNKETLSGLTSFFYQFNYVMAVDGLSLP
LVFLTALVALMAALASVYIKKRWKTYFILFLLLETGMFGVFMAQDLFLFFVFFEVTLI
PMFFLIGIWGYMDRERAANKFLIYNGLGSAIMLIAFLILVTTAGFIQTAAGGGTSIHY
SGDINVITENLFQNAQSYVNQNDPSGNNPFFLSETMKWALFVLLLVAFGIKLPIFPFH
TWMLKVHTEAPPSIVMIHSGILLKMGAYGLIRFGILLFPQQAVAWAGVLAVLGVINIL
YGAVLAFVQKEFKLVLAYSSISHMGIVLLGIAAFNTVGLEGAIFQLVSHGLISALMFL
LVGSIHERTGTTELGSLGGLAKSIPFISGILLVAGMASLGLPGLSGFVSEFLAFLGLF
ESHPVITAVGALGIILAAVYVLRGVLSITYGPLQEGLPEMRDARLIEAVPMITLVAFI
VVLGIYPAVLSGPLHQTVSSFDQFIHSVAKIGG"
misc_feature 59341..60912
/locus_tag="PM3016_62"
/note="NADH:ubiquinone oxidoreductase subunit M; Reviewed;
Region: PRK05846"
/db_xref="CDD:180285"
misc_feature 59806..60678
/locus_tag="PM3016_62"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene 60962..62482
/locus_tag="PM3016_63"
/db_xref="GeneID:11882026"
CDS 60962..62482
/locus_tag="PM3016_63"
/codon_start=1
/transl_table=11
/product="NADH dehydrogenase subunit N"
/protein_id="YP_005310201.1"
/db_xref="GI:379718070"
/db_xref="GeneID:11882026"
/translation="MESPLQLLTAADLALLAPELTLVAASVVLALLDLVLPKSSSRHV
LGWLSFVSILLSAYFVVSMLHPAEPKQLLQFSYRVDDFAGVLKLVLLAGAGLITFMSI
GSVKEEDIPHLGEFYYLILPATLGGMIMASSGELITLFVGLELLSITSYILVAMRKRN
LQSNEGAFKYIVLGGISSAIILYGMSFLYGMTGSTVIAEINAGLGQASQGMLPLMYLS
FFLLLAGFGFKVAAAPFHMWAPDVYQGAPTPVTAYLAVVSKAAAFAILFRVIYNVFGV
GELMGQPFQQDVLLSLMVVAAIAMVAGNFVALRQSNLKRLLAYSGVANSGYLLVPIAT
HFSLVHYSNFSEFAFYLIAYLFMNIGIFAVLMILEGATGDSELKSLAGLYYRAPWTAV
ATVLLVLSLAGLPLSGGFFGKLYIMFGTMQTQHYWLAAVLIGTSVVSFYYYFGFIRQM
FMRSNEEAGETRIPLTLGITMWLCAGASLLLGVIPHVVLGYIDSIFSLTKDLFFMF"
misc_feature 61070..62449
/locus_tag="PM3016_63"
/note="NADH:ubiquinone oxidoreductase subunit N;
Provisional; Region: PRK05777"
/db_xref="CDD:180252"
misc_feature 61358..62218
/locus_tag="PM3016_63"
/note="NADH-Ubiquinone/plastoquinone (complex I), various
chains; Region: Oxidored_q1; pfam00361"
/db_xref="CDD:201180"
gene complement(62659..63129)
/locus_tag="PM3016_64"
/db_xref="GeneID:11882027"
CDS complement(62659..63129)
/locus_tag="PM3016_64"
/codon_start=1
/transl_table=11
/product="putative transcriptional regulator"
/protein_id="YP_005310202.1"
/db_xref="GI:379718071"
/db_xref="GeneID:11882027"
/translation="MDQNAKLLQLDNQLCFAIYATSREITKLYQPFLERLGLTYPQYL
AMMVLWERQECSVKELGEALYLDSGTLTPLLKRLEASGLVTRNRSAEDERVVRIGLTE
QGKALREQAAIVPQALMEQTCLSAAEFEGLLQQFKSLLKRVHEAGGRTGNGDRG"
misc_feature complement(62746..63036)
/locus_tag="PM3016_64"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature complement(62842..63018)
/locus_tag="PM3016_64"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
gene 63209..63307
/locus_tag="PM3016_65"
/db_xref="GeneID:11882028"
CDS 63209..63307
/locus_tag="PM3016_65"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310203.1"
/db_xref="GI:379718072"
/db_xref="GeneID:11882028"
/translation="MEVGEKDREPVMRKIRKGVARAEALSNSSIIL"
gene 63402..65921
/locus_tag="PM3016_66"
/db_xref="GeneID:11882029"
CDS 63402..65921
/locus_tag="PM3016_66"
/codon_start=1
/transl_table=11
/product="subtilisin-type proteinase"
/protein_id="YP_005310204.1"
/db_xref="GI:379718073"
/db_xref="GeneID:11882029"
/translation="MNATKWKLSTLTSLTCLALCLTFTQAARGAEASDPLAAKQTYLG
PTGMTKAWDISKGAGGVTIAIVDTGVDLNHPDLKGNLVPGVNLIQPGQPPADDNGHGT
NVAGIIGAAGGNDKGIAGMLWQARIMPVKALEADGSGGETMLGEGIRYAVDHGAKIVV
LSLGLNKYSDYLSEIVKYAESKDVLLVAATGNEGNRVKYPAAYPTVLAVGGMTAGGAV
DTRSNTGPEVDVVAPWNVFTTALGGSYEAKDGTSMAAPQVAAAAALLWERYPQMKAHQ
IRQWVRQTAQDLGPAGWDPGTGYGLLRVDRLLSERIAEDMYEPNDRKDQAKTVSNAKS
VTASFASGTDADWYVIDAQYDGTVSLSFAMDSSMTVSAQHTDASGVLSAKTVQGGGAV
TFPVSKGRSYVQLQLKDRGQAEAVPYRMTTSFEIYRDAFEDNDRQFKASVLPSRTLTV
KGTFHQTGDTDWYEFPVPESGSMRIRLTSDTARIDPVLLVQKQGEKSVTVDYGDDGAE
EGYELTEVFPGSYYIRVTNVKEYANAVVGEYTLKIEYDAKLADPNEPNNKSYQATVVS
LDTPYTGLLDKPNETDWFQFRVEQESRVGIGLTDIPAGVSLYMHLYDGSMRSIASSMN
EQGSAVQSLTGRLEPGTYYVKLTSSVPFDNRMYELTVEAKPLLGGYTDVSGHWAQSAI
LTLSGRGVINGYEDYLFQPDRPITRAEATAVLTRAYGLTKEKEIAYSDLGSGHWAYTY
IARAAQAGIIEGYPDRTFAPDQPVSRMEMTAMLARGAGMSGKRRGAVPFTDVDESYWG
TGLLKQMKAEGLIGGYADGTFRPDQQATRAEFVQLLAGMLK"
misc_feature 63501..64268
/locus_tag="PM3016_66"
/note="Peptidase domain in the S8 and S53 families;
Region: Peptidases_S8_S53; cl10459"
/db_xref="CDD:209143"
misc_feature order(63699..63701,63888..63890,64155..64157)
/locus_tag="PM3016_66"
/note="active site"
/db_xref="CDD:173787"
misc_feature order(63699..63701,64155..64157)
/locus_tag="PM3016_66"
/note="catalytic residues [active]"
/db_xref="CDD:173787"
misc_feature 64776..64976
/locus_tag="PM3016_66"
/note="Bacterial pre-peptidase C-terminal domain; Region:
PPC; pfam04151"
/db_xref="CDD:112942"
misc_feature 65409..65531
/locus_tag="PM3016_66"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 65580..65708
/locus_tag="PM3016_66"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 65763..65894
/locus_tag="PM3016_66"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 66037..66288
/locus_tag="PM3016_67"
/db_xref="GeneID:11882030"
CDS 66037..66288
/locus_tag="PM3016_67"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310205.1"
/db_xref="GI:379718074"
/db_xref="GeneID:11882030"
/translation="MDYVDQMNASMGLKGVINIAVVLVFIGFSWWALQELKLEAILKR
PRSAAAKTLQIFLSIALGYQVARFVIDYLDWSTWFSKMF"
misc_feature 66067..66285
/locus_tag="PM3016_67"
/note="Protein of unknown function (DUF1146); Region:
DUF1146; cl11486"
/db_xref="CDD:209341"
gene 66331..67755
/locus_tag="PM3016_68"
/db_xref="GeneID:11882031"
CDS 66331..67755
/locus_tag="PM3016_68"
/codon_start=1
/transl_table=11
/product="protein MurA1"
/protein_id="YP_005310206.1"
/db_xref="GI:379718075"
/db_xref="GeneID:11882031"
/translation="MDSTTDINLSGLTNGIVTGGYKHIIQNTRRGTMMSKIIVRGGKK
LSGRVRIHGAKNAVLPIIAASILGSEGVSVIHDAPPLDDVLVINKVLESLGIAVEYRN
ETIRVDAGRITTCEASYDLVRKMRASFLVMGPLLTRMGQARISLPGGCAIGTRPIDQH
LKGFEAMGAEIELGQGYIEARVNGRLKGAKIYLDVASVGATENIMMAAALAEGTTLIE
NAAKEPEIVDLANYLNAMGAKIRGAGTGLIRIDGVERLQGAVHTVIPDRIEAGTYMIA
AAITGSDLYVEGAIGDHLRPVISKMQEMGVQIEEDENGIRVYTVGPLKAVDVKTLPYP
GFPTDMQSQMMALLLTAEGTSIVTETVFENRFMHVEQMANMSAQIKVEGRTAVISGGA
RLQGAKVCATDLRAGAALILAALVAEGDTEITGLHHIDRGYVGITEKLSLLGAEIRRL
PLEIVEETEREEVLPLFAVQPSLA"
misc_feature 66430..67677
/locus_tag="PM3016_68"
/note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
Region: murA; TIGR01072"
/db_xref="CDD:162190"
misc_feature 66463..67659
/locus_tag="PM3016_68"
/note="UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate +
UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555"
/db_xref="CDD:30128"
misc_feature order(66481..66492,67117..67128)
/locus_tag="PM3016_68"
/note="hinge; other site"
/db_xref="CDD:30128"
misc_feature order(66496..66498,66706..66708,66718..66720,66793..66810,
66913..66915,66922..66927,67345..67347)
/locus_tag="PM3016_68"
/note="active site"
/db_xref="CDD:30128"
gene 68015..69064
/locus_tag="PM3016_69"
/db_xref="GeneID:11882032"
CDS 68015..69064
/locus_tag="PM3016_69"
/codon_start=1
/transl_table=11
/product="Sporulation protein SpoIID"
/protein_id="YP_005310207.1"
/db_xref="GI:379718076"
/db_xref="GeneID:11882032"
/translation="MTKYKLNPRQKKVLGWFAVWLASFTAVVVLVPGLLVRSTTPSAD
PAAVRPASAQPEAGDVPLIPVYLSKSKSTDRIPLETYVRGVVAAEMPAEFEPEALKAQ
ALAARTYIIRRMLAGDRTGVPAGEALVTDTIAHQAYISDEELGQRWGADYARVRDKLN
RAVEETKDTILTYEGQPIEASFFSTSNGYTENSEDYWNVKIPYLRSVASPWDAKLSPR
YKETVRFSGKELQTRLGLPAAIPATTGASRGLKVLERSQGRRILKLSAGGKQFTGREV
REKLGLNSSGFQWSYKDGAWEITTFGYGHGVGMSQWGAQGMALEGRKAEEIVKHYYTG
VELSKASTLLSAKSF"
misc_feature 68060..69022
/locus_tag="PM3016_69"
/note="stage II sporulation protein D; Region: spore_II_D;
TIGR02870"
/db_xref="CDD:163052"
misc_feature 68201..68533
/locus_tag="PM3016_69"
/note="Stage II sporulation protein; Region: SpoIID;
pfam08486"
/db_xref="CDD:203956"
gene 69133..69855
/locus_tag="PM3016_70"
/db_xref="GeneID:11882033"
CDS 69133..69855
/locus_tag="PM3016_70"
/codon_start=1
/transl_table=11
/product="stage II sporulation protein Q"
/protein_id="YP_005310208.1"
/db_xref="GI:379718077"
/db_xref="GeneID:11882033"
/translation="MNEQKRDSQNEAPKTIEGAQHTSSAWKRLLAKKWVFPATYIAAA
AIILTIMWVYQGGGGLTTNSDVSVDKPAGTVTDSVSGPDSVATTAKQETMQWPVKNRS
ELEVVLPYFDPNAANDVRQAAMVEYGDTFTPHIGMDFAKKDNAPFEVLAVMGGKVTAV
QKDPLVGNLVEITHANGLVSVYQSLAEVKVTKDAEVKKGDVIAQAGRNELEKDQGTHL
HFELRQGQGGPAVNPEQYIAEQ"
misc_feature <69508..69846
/locus_tag="PM3016_70"
/note="Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane]; Region: NlpD;
COG0739"
/db_xref="CDD:31082"
misc_feature 69526..69831
/locus_tag="PM3016_70"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:201854"
gene 70139..70426
/locus_tag="PM3016_71"
/db_xref="GeneID:11882034"
CDS 70139..70426
/locus_tag="PM3016_71"
/codon_start=1
/transl_table=11
/product="protein SpoIIID"
/protein_id="YP_005310209.1"
/db_xref="GI:379718078"
/db_xref="GeneID:11882034"
/translation="MHDYIKERTIKIGRCLVETKHTVRTIAKEFGVSKSTVHKDLTER
LPEINPELANQVKHILEYHKSIRHLRGGEATKIKYRKTRSPKVQEKLVTVK"
misc_feature 70142..70387
/locus_tag="PM3016_71"
/note="Stage III sporulation protein D; Region: SpoIIID;
pfam12116"
/db_xref="CDD:152551"
gene 70626..71624
/locus_tag="PM3016_72"
/db_xref="GeneID:11882035"
CDS 70626..71624
/locus_tag="PM3016_72"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310210.1"
/db_xref="GI:379718079"
/db_xref="GeneID:11882035"
/translation="MLSKDIGIDLGTANVLIHVKGRGVVLDEPSVVAIESDGKRVLAV
GEEAFRMVGRTPGNIVAIRPLKDGVIADFEITELMLKYFINKVGGRNWYSHPRILICA
PTNITSVEQKAIREAAERSGAREVFLEEEPKAAAIGAGMDIYQPSGNMVVDIGGGTTD
VAVLSMGDIVTSSSIKIAGDKFDSSIMKYIKSKYKLLIGERTSEDIKKRIGTVHPEGK
KETMDIRGRDMVSGLPLTMTINSQEIQEALDEPVSNIVAAAKSVLERTPPELSADIID
RGVILTGGGAMLHGIDQLLADELKVPVLIAEDPMHCVVKGTGIMLDNLDKVSKRKF"
misc_feature 70626..71618
/locus_tag="PM3016_72"
/note="rod shape-determining protein Mbl; Provisional;
Region: PRK13928"
/db_xref="CDD:184402"
misc_feature 70641..71600
/locus_tag="PM3016_72"
/note="MreB and similar proteins; Region: MreB_like;
cd10225"
/db_xref="CDD:212668"
misc_feature order(70650..70652,70656..70667,70827..70829,71016..71018,
71082..71084,71088..71099,71160..71165,71235..71237,
71244..71249,71472..71480,71484..71489,71553..71555,
71562..71564)
/locus_tag="PM3016_72"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212668"
misc_feature order(70650..70652,71082..71084)
/locus_tag="PM3016_72"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:212668"
misc_feature order(70728..70730,70776..70778,70800..70802,71061..71063,
71067..71069,71127..71129,71223..71225,71229..71231,
71298..71300,71322..71324,71331..71333,71421..71423,
71430..71432,71526..71528,71598..71600)
/locus_tag="PM3016_72"
/note="putative protofilament interaction site
[polypeptide binding]; other site"
/db_xref="CDD:212668"
misc_feature order(71043..71048,71070..71072,71448..71456,71529..71531,
71535..71537,71544..71546)
/locus_tag="PM3016_72"
/note="RodZ interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212668"
gene 71641..72540
/locus_tag="PM3016_73"
/db_xref="GeneID:11882036"
CDS 71641..72540
/locus_tag="PM3016_73"
/codon_start=1
/transl_table=11
/product="flagellar basal-body rod protein"
/protein_id="YP_005310211.1"
/db_xref="GI:379718080"
/db_xref="GeneID:11882036"
/translation="MLRGLYTAASGMIAQQRKHDIVTNNIANLNTPGFKGGNGINRSF
PEVLIERTRDDNSGPAAATRTVGRIHTGVLAEENVSLHAQGDLQETNNPFDFALVSNI
QVPGARFDSSGKYVDENGERVIQPQAFFTIQNAAGDTRYSLNGKFSLDVNGRMIDSEG
NQVLGSDGQPIVLMDGNTPVTNFRITRDGQFTNVDGRPINGANGQPLTMMITRVEDPN
LLIREGNGLYRLSEENQAMAQQAGGQDQFEVRQGFVERSNVDAGQSMVDMMSALRAYE
ANQKMIQFYDKSMEKAANDVGRV"
misc_feature 71641..72531
/locus_tag="PM3016_73"
/note="Flagellar basal body rod protein [Cell motility and
secretion]; Region: FlgG; COG4786"
/db_xref="CDD:34397"
misc_feature 71653..71745
/locus_tag="PM3016_73"
/note="Flagella basal body rod protein; Region:
Flg_bb_rod; pfam00460"
/db_xref="CDD:109515"
misc_feature 72298..72522
/locus_tag="PM3016_73"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene 72616..73488
/locus_tag="PM3016_74"
/db_xref="GeneID:11882037"
CDS 72616..73488
/locus_tag="PM3016_74"
/codon_start=1
/transl_table=11
/product="flagellar hook-basal body protein"
/protein_id="YP_005310212.1"
/db_xref="GI:379718081"
/db_xref="GeneID:11882037"
/translation="MNNSMINSSVSMHSLQQKLDLVANNIANVNTTGYKRREASFQDV
LTSVKQQPQTFEKNGRLTPLGYGQGWGSKMVAAQLNLQQGSLQVTDNLLDMAIEGNGL
FEISANGEDENGNPARTTRWTRNGAFELSQSTDPADPRTFLTTKDGHYVMGADDQPIR
IPAGHRVQIQADGVIMAYNEANQTAAPVQAGQLKMVRVVRPQLLEQIGDNLYGLAGDI
TPQQRDEILQTVNAGNNEVDPITVRQGFLEQSNVNLSEEMTELLTVQRAYQLNSRAIS
SADQMMNLANNLRV"
misc_feature 72658..73482
/locus_tag="PM3016_74"
/note="Flagellar basal body rod protein [Cell motility and
secretion]; Region: FlgG; COG4786"
/db_xref="CDD:34397"
misc_feature <72658..72720
/locus_tag="PM3016_74"
/note="Flagella basal body rod protein; Region:
Flg_bb_rod; pfam00460"
/db_xref="CDD:109515"
misc_feature 73225..73479
/locus_tag="PM3016_74"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene 73573..73812
/locus_tag="PM3016_75"
/db_xref="GeneID:11882038"
CDS 73573..73812
/locus_tag="PM3016_75"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310213.1"
/db_xref="GI:379718082"
/db_xref="GeneID:11882038"
/translation="MQSEVGVLSENPKKAPALSPRWKKITLTVLKWTWIPLLCLAALF
TGLSIGYAVIGQGDFKDVWDPGTWRHLFDLVFAEN"
misc_feature 73681..73797
/locus_tag="PM3016_75"
/note="DNA-directed RNA polymerase subunit beta; Region:
EpuA; pfam11772"
/db_xref="CDD:152208"
gene 73958..74500
/locus_tag="PM3016_76"
/db_xref="GeneID:11882039"
CDS 73958..74500
/locus_tag="PM3016_76"
/codon_start=1
/transl_table=11
/product="CDP-alcohol phosphatidyltransferase"
/protein_id="YP_005310214.1"
/db_xref="GI:379718083"
/db_xref="GeneID:11882039"
/translation="MWNVPNILTLCRFLLIPAYLVVFEAGYIRSAFFILLLAGATDVL
DGYIARRRGLVTDLGSMLDPLADKSMMIAVILSLVFSQMISWQAACAMFLRDAGMIAG
SAYFHFRGKKTVPANAMGKLTTVLYYVAILLIIFELPYAHAYLWFVISVSILTSIIYI
LQFNLLHKRAGKPQSLDKPR"
misc_feature 73964..74446
/locus_tag="PM3016_76"
/note="CDP-alcohol phosphatidyltransferase; Region:
CDP-OH_P_transf; cl00453"
/db_xref="CDD:207054"
gene 74693..75124
/locus_tag="PM3016_77"
/db_xref="GeneID:11882040"
CDS 74693..75124
/locus_tag="PM3016_77"
/codon_start=1
/transl_table=11
/product="protein FabZ"
/protein_id="YP_005310215.1"
/db_xref="GI:379718084"
/db_xref="GeneID:11882040"
/translation="MLDAKQIQQIIPHRYPFLLVDRILEVEAGKRAVGIKNVTINEPF
FQGHFPEYPVMPGVLIVEALAQVGTVAMLSVEENQGKIGFFAGIDNFRFREQVLPGDT
LTMEVVMTRVKGVIGKGHGTARVGDKVVAEGELMFALKAPN"
misc_feature 74723..75112
/locus_tag="PM3016_77"
/note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
protein (ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid...; Region: FabZ; cd01288"
/db_xref="CDD:48033"
gene 75186..76895
/locus_tag="PM3016_78"
/db_xref="GeneID:11882041"
CDS 75186..76895
/locus_tag="PM3016_78"
/codon_start=1
/transl_table=11
/product="protein PgcA"
/protein_id="YP_005310216.1"
/db_xref="GI:379718085"
/db_xref="GeneID:11882041"
/translation="MNTQTRVQEQYELWLGDAAIDAATKEELRSIEGDAKEIEDRFYR
DLEFGTGGLRGVIGAGTNRINAYTVARATQGLAQFLLETAGKDQPSVVIAYDSRNQSP
EFALETAKVLAGNGIKAYVFESLRTTPELSFAVRHLNADAGVVITASHNPPEYNGYKV
YGNDGGQLVPHQAEQVIEQIRGVQSFADVKRSSRADAEKAGLLQWIGQAVDDEYIRAV
TAVSRNPQLIKETADDFRIVYTPLHGAGNLSVRAALAGVGFTQVHVVAEQELPDANFS
TVKSPNPEEREAFTLAINEAKKIGADIIIGTDPDCDRMGAVVKDPSGEYFVLSGNQSG
AIMVDYLLSSLKDRGEMPENGVVVKTIVTSEMGAVIAEHYGAKVVNTLTGFKYIGEKM
TQYEQTGEATFLFGYEESYGYLAGNYARDKDAVIASMLISEAAAYYKSQGKTLYDVLQ
ELYERHGYFLEKLESRTLKGKDGVEQIGSIMTDWRTNAPEQINGLKVTKIEDFSEGLY
GLPVENVLKYTLEDDSWFTLRPSGTEPKIKVYFAVRSSSSEGAASSLDQLVETVMSRV
DKK"
misc_feature 75186..76877
/locus_tag="PM3016_78"
/note="phosphoglucomutase-2-like protein; Provisional;
Region: PTZ00150"
/db_xref="CDD:185482"
misc_feature 75318..76817
/locus_tag="PM3016_78"
/note="This CD includes PGM2 (phosphoglucomutase 2) and
PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
is thought to be a phosphopentomutase that catalyzes the
conversion of the nucleoside breakdown products,
ribose-1-phosphate and...; Region: PGM2; cd05799"
/db_xref="CDD:100092"
misc_feature order(75330..75332,75336..75338,75345..75347,75630..75638,
75660..75662,76107..76109,76113..76115,76119..76124,
76269..76271,76332..76340,76407..76409,76413..76415,
76419..76421,76770..76772,76776..76784,76797..76799)
/locus_tag="PM3016_78"
/note="active site"
/db_xref="CDD:100092"
misc_feature order(75336..75338,75630..75632,76122..76124,76269..76271,
76332..76334,76338..76340,76407..76409,76413..76415,
76419..76421,76770..76772,76776..76784,76797..76799)
/locus_tag="PM3016_78"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100092"
misc_feature order(75630..75632,76107..76109,76113..76115,76119..76121)
/locus_tag="PM3016_78"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100092"
gene 76927..78981
/locus_tag="PM3016_79"
/db_xref="GeneID:11882042"
CDS 76927..78981
/locus_tag="PM3016_79"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310217.1"
/db_xref="GI:379718086"
/db_xref="GeneID:11882042"
/translation="MKGRYLRLNQWAVKALWWLVILGMLASLAIAYERYQTEEGSGRR
VEFVMDYRDLLEISDLQTDPKRFVSDQLQKLKEHRVGSLAVYEATLNELQLSRRLQVY
SSQEAAVLTQSPGTIGENFTYVLFESGETERRLAPVIRQAFEDLGVAVRPWNYKNQPG
LRIEMAKEEAVLKSMDPDPMTLETLKSQGFTIVFRMSNRRAFEAARMDALLSTMKDLG
VRRIIVDGDSVPGFISEKDVSGLDGMGEILTKHKIGLAVIEMQKTPQRGFNGLAQRIR
HDVVRLHSFTENDAQKLTENITAEELKGRIQGVADRFVLAAKDRNIRMVLLNARAVKS
LEKGRILHPLDSIYEALTGADGAIPRIAKAGYKMAPAEPFQLVHSSWQTPAKLLVWAG
SVALIALMISYFIPEITAVVFLLGMIGSAGLYVLSSSLFSQGLALGAGTSAATLSIMV
ALQAARRKLDKPDGNRLLFAIGLLLRASLISVIGLLFIVGLLNQIQYSLVLEQFRGVS
VLHLAPIALVGLYWLLFMDKVSYKERWARAQSMLSSNISVLWIVAAAVLAAAGYYYLS
RTGNEGQASDWEKYFRSFLENTLGVRPRTKEFLLSHPLFILGAYLSFKYRSALLLILA
GVIGQASVVDTFAHLHTPLQISAIRVLYGLGFGTLIGIALIIVWEIITRSWQRWVPRL
NE"
gene 78957..80093
/locus_tag="PM3016_80"
/db_xref="GeneID:11882043"
CDS 78957..80093
/locus_tag="PM3016_80"
/codon_start=1
/transl_table=11
/product="protein CsaB"
/protein_id="YP_005310218.1"
/db_xref="GI:379718087"
/db_xref="GeneID:11882043"
/translation="MGTPVKRIVLSGYYGFNNSGDEAVLQSILLALQEQGERQGVTFH
PVVLSVNPAETARTYGVESAHRMRPMELWKALRGADGLISGGGSLLQDETSPKTIPYY
LGVIRLAQLLGKPVFVYSQGIGPVHRPKFFGWIRSAFQRCRVVTVRDEESKALLQQMG
LSGSEVEVVPDPVMGMPLKNAARHRDPAGADSGLAPVIGVSVRFWNKDRSELDAAAEA
LRKVMEETDAVVRFLPFHLPSDEEASEYVAQRLGETYKHRISIAKGVTHPQDMLAETA
SVSVLLGMRLHSLIYAAGRYVPMVGISYDPKIDQFLNRLSMQAACSTQAPNAAAIAET
LLHLLKSREAWREDKRQVIERLKSEAHRPAERIAAFYSKAQGRR"
misc_feature 78978..79892
/locus_tag="PM3016_80"
/note="polysaccharide pyruvyl transferase CsaB; Region:
S_layer_CsaB; TIGR03609"
/db_xref="CDD:132648"
gene 80439..81542
/locus_tag="PM3016_81"
/db_xref="GeneID:11882044"
CDS 80439..81542
/locus_tag="PM3016_81"
/codon_start=1
/transl_table=11
/product="glycosyl transferase family protein"
/protein_id="YP_005310219.1"
/db_xref="GI:379718088"
/db_xref="GeneID:11882044"
/translation="MNLLYGIGFAAALLIALVMTPLVRRFAFWAKAVDAPNHRKVHSR
IMPRLGGLAIFIAFIGAYFIVSPAIDTLKADVVFGLLVGGTIVVLVGALDDRFDLSPK
IKLLGQILAASVVVYSGVTIDLVNVPFGDETISLSWLAVPLTIFWIVGVTNAINLIDG
LDGLSAGVSAIATTTILVLALMMGNVTVVLLCTLLLGSIIGFLFYNFHPAKIFMGDSG
ALFLGFTLATLSVLGFKQATVVSLLVPIMILGVPLSDTFFAIMRRWVNNLPISAADKS
HLHHCLLRMGFSHRTTVLIIYGIATFFGFSAVLLSYMSEQQALWGAVILVAVLLVVLV
VGAEFIGIISRTKRPVLHFLNKIRMKTMQRMTK"
misc_feature 80490..81377
/locus_tag="PM3016_81"
/note="UDP-N-acetylmuramyl pentapeptide
phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
transferase [Cell envelope biogenesis, outer membrane];
Region: Rfe; COG0472"
/db_xref="CDD:30820"
misc_feature <80718..81299
/locus_tag="PM3016_81"
/note="This subfamily contains Escherichia coli WecA,
Bacillus subtilis TagO and related proteins. WecA is an
UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate
(Und-P) GlcNAc-1-phosphate transferase that catalyzes the
formation of a phosphodiester bond...; Region:
GT_WecA_like; cd06853"
/db_xref="CDD:133463"
misc_feature 80718..80723
/locus_tag="PM3016_81"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:133463"
misc_feature 81075..81086
/locus_tag="PM3016_81"
/note="putative catalytic motif [active]"
/db_xref="CDD:133463"
misc_feature order(81225..81227,81267..81278)
/locus_tag="PM3016_81"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133463"
gene 81715..85509
/locus_tag="PM3016_82"
/db_xref="GeneID:11882045"
CDS 81715..85509
/locus_tag="PM3016_82"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310220.1"
/db_xref="GI:379718089"
/db_xref="GeneID:11882045"
/translation="MKRTTSLRISVLLLFNMLFSLLAPLTGLADGIQLKINGLDETTE
SSPAQLTTSTITLPVTINGISADQINSIYYEITNMNTGVTSVNKTNKAVKNANNANEV
VFSGVSLTEGLNKVVAKYGEATVVSSPAAWVHFTSVTNITDLKLNEVALNDNEMYPKS
APYTSLSITGTASNATRIQAYVNGTAYDPVVFNRGNFTFITNTGRNNDLALKPGDNEM
RLISTNNSNTYYIDRTFVYDNGQAFAYDAYVKSTPAAADQYQKLAAVPTVTKNTADQV
TVKAKLKVPVDSSNNLLYKEVDVAVGNQTPTKYVLSSLPVSSSVANQYRIYDFEYNFT
TDTSNKYQAVTFSFITTSDFVQPGGQYAFYVVDPNTPYVNYMEYSIPNGLTVKVNEVG
MTQLNRFPASLYVYTTTNASSVKLRVNNSDYATASVIDSTTTDTSGTTLNVWKFDIPT
LADGISTLTVVPVGVNGENVQGSKTYLVQISSAPYVILDSIYNGQVFTSASKILCGNT
GTGPCLTGRVVNLPEAEKDNVVLQVNDMQFNMSGLYKTPYDGSFTITSATPTADGTKT
FGHKDVMGADGKKTFLFSVKVGGKVITESKFEIFILSDNVPYINSVVPVEENPDNKVF
KTVKTDEYATTEDVVALTGSVRNATTYTVEYTIPGETAKRSVAIASKTQTYDNDTEKI
TFTETFNTNSAPLSVNGDYYFQITASNNSGVLATKTVKISKEAHPYVITLPEKLFTNE
NGKTQANINKNYQRIEIKAEGAISILFGKVEVFPRGGMFVYEAKGLKAGANEIKFTVN
RGTAQNAGSLVLYNVNTPIEGAQYKSEIASSMKVFGGDLEMKLGKDVKLMRNDRTSTD
TFLTNKRELLFGIANVQTGIVDKDIEFANSLATQSLSGAVETYRFKPASKLFWIDAGT
ISDQVDAGDAADLKGALEGGGTLPLVSSDPDVSSTLQPTPFYQRYDLQDLVVPTQPVT
LTFKYDPTITADAWKYVTVFQYSTFADRSGAEISAGVPVSQMGWKNLGGVVDSKKNTI
TVTVPSFGYFQVMYMNDSFNDVTNHGWARDIIDTLYSKGYMFNKDSGGSRFLPDDAIT
RGEFVSLLVKVFDIPLTNPDTSNPDFQGTFGDVRKGVTLQNSINMYDYLHIEAGARAG
IVRGTSQGLFLPNEAITRQDAAVMIARAAELKMGTDEDKVQASLDKLFTDSTDPKFSY
YAKPAVEAVTKAGFIEGRPNTLLAGQTELTNRFDPVDNITRAESAAIALRVLAKLKKV
PK"
misc_feature 84856..84993
/locus_tag="PM3016_82"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature <85129..85218
/locus_tag="PM3016_82"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 86063..86365
/locus_tag="PM3016_83"
/note="hypothetical protein"
/pseudo
/db_xref="GeneID:11882046"
gene 86849..89131
/locus_tag="PM3016_84"
/note="hypothetical protein"
/pseudo
/db_xref="GeneID:11882047"
gene 89198..89779
/locus_tag="PM3016_85"
/db_xref="GeneID:11882048"
CDS 89198..89779
/locus_tag="PM3016_85"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310221.1"
/db_xref="GI:379718090"
/db_xref="GeneID:11882048"
/translation="MRALFTKSLILAGILSIAAVYVASADGTAPGVEPGSVDDPVITK
SYFDQNIANKVTDELSKQSITEAKVKELISAALAGGGSTAAPGEPVSSEGSALKVVQL
QPGQTILGAAGTEIIVRSGKVLAVSDTEDGIPDVTIGKDVTAGAPVDLNHLLIVPREG
RGIKPDPKSKADIYVMVRGGYTITEASDKKATP"
gene 89868..90137
/locus_tag="PM3016_86"
/db_xref="GeneID:11882049"
CDS 89868..90137
/locus_tag="PM3016_86"
/codon_start=1
/transl_table=11
/product="small acid-soluble spore protein"
/protein_id="YP_005310222.1"
/db_xref="GI:379718091"
/db_xref="GeneID:11882049"
/translation="MSKTNKKVVPESGKALDVLKYEIAAELGLPVGKSAANLNVEFAT
ELGAIPSQNMKEDYWGHIASRDAGAVGGTITSRLIRKAEEMMFNL"
misc_feature 89880..90125
/locus_tag="PM3016_86"
/note="Small, acid-soluble spore proteins, alpha/beta
type; Region: SASP; pfam00269"
/db_xref="CDD:144014"
gene 90328..91533
/locus_tag="PM3016_87"
/db_xref="GeneID:11882050"
CDS 90328..91533
/locus_tag="PM3016_87"
/codon_start=1
/transl_table=11
/product="methionine adenosyltransferase"
/protein_id="YP_005310223.1"
/db_xref="GI:379718092"
/db_xref="GeneID:11882050"
/translation="MSNPVGRRLFTSESVTEGHPDKICDQISDSVLDAFLKNDPNARV
ACEVSVATGLVLVIGEITSRSEYVDIQSIARETIKEIGYTRAKYGFDSTTCAVLVSLN
EQSPDIAQGVNQALEAREGQMTDDQIEAIGAGDQGMMFGFAVNETPELMPLPISLSHQ
LSRRLTEVRKNGTLSYLRPDGKTQVTVEYEGDTPVRVDTIVISTQHGEEVTLEQIQKD
IKEHVIKPIVPDNLIDENTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGG
GAFSGKDPTKVDRSGAYAARYVAKNIVAAGLADKCEVQLAYAIGVAKPVSIAVDTFGT
GKVSEEKLVEIVRSHFDLRPAGIIKMLDLRRPIYKQTAAYGHFGRTDVDLPWERTDKA
EALKAAAQA"
misc_feature 90343..91500
/locus_tag="PM3016_87"
/note="S-adenosylmethionine synthetase; Validated; Region:
PRK05250"
/db_xref="CDD:179974"
misc_feature 90343..90645
/locus_tag="PM3016_87"
/note="S-adenosylmethionine synthetase, N-terminal domain;
Region: S-AdoMet_synt_N; pfam00438"
/db_xref="CDD:201226"
misc_feature 90712..91068
/locus_tag="PM3016_87"
/note="S-adenosylmethionine synthetase, central domain;
Region: S-AdoMet_synt_M; pfam02772"
/db_xref="CDD:202384"
misc_feature 91072..91491
/locus_tag="PM3016_87"
/note="S-adenosylmethionine synthetase, C-terminal domain;
Region: S-AdoMet_synt_C; pfam02773"
/db_xref="CDD:111646"
gene 91770..94397
/locus_tag="PM3016_88"
/db_xref="GeneID:11882051"
CDS 91770..94397
/locus_tag="PM3016_88"
/codon_start=1
/transl_table=11
/product="copper amine oxidase domain-containing protein"
/protein_id="YP_005310224.1"
/db_xref="GI:379718093"
/db_xref="GeneID:11882051"
/translation="MKLQKNWHRLSCVMLSATIFISSWTVGTVSYATAEPVVTMVSEE
PLTSGAILKKYVWQTTRSGKAVKTNANVVEVDLTNPYVKIDVMTGTNNQFTKKQSVLA
MAKETKAVAGINGDFFNTKAEGVPMGAQIGNGQLMATPMLNSPGWYTFALDKNNKPIV
DAFTFQGNIITKDGASYPLGGINKTYYWYGPNDTHSHIDGLFMYTNAWGQVDRSNDGV
TYPTEVLVQNGIIKQVADNGIIQMIAPQDGYILRAAGKAADFVREHMKAGDPIQADYK
MLPQDASKNYDVDSFKMMIGGHTLLVDQGQPSIFTLDLTGLGGYRARTALGYSQDEKK
AFIITADASGDSKGLSMTELQQFMVKIGVWKGLNLDGGGSTQMAARPLGETTPVLINQ
TEGGGQRQVVNGVGVYTLAPKGAVKGLTIQAPLFLFIGENAPLSFRGYDEYYNPVEVG
TATAAWSTSSKLGSFKENIFTPTGAGLAKVTATAGTGTAIEDLEIIGRHQLTGLKINA
DRAVIANGASVKLPVIAMTSAGESREVPSSLIEWEVLGVKGEVVNGELKVSDLNGQKA
AQVIAKYDGYSTMAVIPVGEDKVWYDLDTNAVQTFSDAKPLGVTSSVYIRPDEKNNKY
LALQYDFSGGGTEADKWAFATLDTRIVIEGQPGQMKMRVNGDESLNWLRAELLDNSGK
IHRVDIARNINWKGWKELTVNLSDYPIDFPIRVQSVYLVNEGQGQDERAEKGQIGIDD
ITFTYRGSLPQPSNNSVSLTVGNKAVSVNGKGMTLEQAPVIVEGNTLIPIRFVTDALG
GTVRWDDQERKVTVIRGGKMIDLWIGNKDLVVNGERITAEVPPVIMSDLTMVPLRILS
ENLGWKVTWDGNTRQITLQ"
misc_feature 92088..>92291
/locus_tag="PM3016_88"
/note="Predicted periplasmic protein (DUF2233); Region:
DUF2233; pfam09992"
/db_xref="CDD:204368"
misc_feature 92496..92909
/locus_tag="PM3016_88"
/note="Predicted periplasmic protein (DUF2233); Region:
DUF2233; pfam09992"
/db_xref="CDD:204368"
misc_feature 94113..94391
/locus_tag="PM3016_88"
/note="Copper amine oxidase N-terminal domain; Region:
Cu_amine_oxidN1; pfam07833"
/db_xref="CDD:203776"
gene 94570..95724
/locus_tag="PM3016_89"
/db_xref="GeneID:11882052"
CDS 94570..95724
/locus_tag="PM3016_89"
/codon_start=1
/transl_table=11
/product="histidine kinase"
/protein_id="YP_005310225.1"
/db_xref="GI:379718094"
/db_xref="GeneID:11882052"
/translation="MSVDVFDRVIKNAIDVMENSKYQIFEICENVRAEREALNKELQL
VIEETAITIDIVDKFEVDYRRSRVRLTEVSRDFKRFNEEDIRAAYEAATQLQAQLAIH
REKELHLKMRRDDLQKRLKNLDKQLERAEALVSQFGVVLEYLSGDLHQVTRLLESAKS
RQLMGLKIILAQEEERKRIAREIHDGLAQNMANMVLRTEITERMLAKEAYSAVKEELA
DLKSGVRAGIEEVRKIIFNLRPMALDDLGLVPTLRKFVQDYEERSKISTKFELIGKEV
RLPSGMEVAVYRLVQEAFSNVLKHAEASHITLELTFQQQMIKLTVTDNGVGFNTAGID
KKITQGSHYGLMGMRERVELLEGRFDIQSEVGAGTKVSMVIPIKSESKEE"
misc_feature 94588..95064
/locus_tag="PM3016_89"
/note="Sensor protein DegS; Region: DegS; pfam05384"
/db_xref="CDD:147523"
misc_feature 95092..95286
/locus_tag="PM3016_89"
/note="Histidine kinase; Region: HisKA_3; pfam07730"
/db_xref="CDD:203743"
misc_feature 95302..95694
/locus_tag="PM3016_89"
/note="Histidine kinase-like ATPase domain; Region:
HATPase_c_2; pfam13581"
/db_xref="CDD:205759"
misc_feature 95425..95694
/locus_tag="PM3016_89"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(95443..95445,95455..95457,95464..95466,95530..95532,
95536..95538,95542..95544,95548..95553,95593..95604,
95650..95652,95656..95658,95671..95676,95680..95682)
/locus_tag="PM3016_89"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 95455..95457
/locus_tag="PM3016_89"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(95542..95544,95548..95550,95593..95595,95599..95601)
/locus_tag="PM3016_89"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 95729..96454
/locus_tag="PM3016_90"
/db_xref="GeneID:11882053"
CDS 95729..96454
/locus_tag="PM3016_90"
/codon_start=1
/transl_table=11
/product="DegU protein"
/protein_id="YP_005310226.1"
/db_xref="GI:379718095"
/db_xref="GeneID:11882053"
/translation="MDIMGSAKRPIKLVLADDHQLFREGVKRILNMESDLEVVGECGD
GIQVLELCNTLHPDIVLMDINMPVENGVVATEKLKEIFPDIKVIILSIHDDESYVFET
LRKGASGYLLKDMEAESLINAIRSVVAGHAYIHPKVTGKLINQLRRMTYLDEQGVTGT
SPVAKEAGVKYVHMDNSPLTRREAEVLRLMAEGKSNKNIGEFLYISEKTVKNHVSSIL
QKMEVDDRTQAVIIAIKNGWVTL"
misc_feature 95759..96451
/locus_tag="PM3016_90"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:32379"
misc_feature 95768..96112
/locus_tag="PM3016_90"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(95777..95782,95915..95917,95939..95941,95999..96001,
96056..96058,96065..96070)
/locus_tag="PM3016_90"
/note="active site"
/db_xref="CDD:29071"
misc_feature 95915..95917
/locus_tag="PM3016_90"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(95924..95929,95933..95941)
/locus_tag="PM3016_90"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 96065..96073
/locus_tag="PM3016_90"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 96263..96433
/locus_tag="PM3016_90"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature order(96266..96274,96311..96319,96341..96346,96350..96355,
96359..96373,96404..96406)
/locus_tag="PM3016_90"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature order(96299..96301,96305..96307,96311..96313,96404..96412,
96419..96421,96428..96433)
/locus_tag="PM3016_90"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 96546..96944
/locus_tag="PM3016_91"
/db_xref="GeneID:11882054"
CDS 96546..96944
/locus_tag="PM3016_91"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310227.1"
/db_xref="GI:379718096"
/db_xref="GeneID:11882054"
/translation="MMLGLVWIIGCYAAGIAVIHALHRQWKRRGTRRAAHYVLYAQNA
QMQLEWYLRSLYFFSWIKGRPIEVTLVDEGSTDETLQIAARIAQEQALNVVESPYWNM
DTWIEGHQEQDVVVIRLNQIKGLESAYKWL"
misc_feature 96696..>96830
/locus_tag="PM3016_91"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
gene 96989..98773
/locus_tag="PM3016_92"
/db_xref="GeneID:11882055"
CDS 96989..98773
/locus_tag="PM3016_92"
/codon_start=1
/transl_table=11
/product="helicase domain-containing protein"
/protein_id="YP_005310228.1"
/db_xref="GI:379718097"
/db_xref="GeneID:11882055"
/translation="MKAWVYAVSTATGITWHVSLDMRADRDHWIRTAGRGFRLFVLEP
ELSFGQAQELAGRVKAGGPVRQLLGKIRAAGESLGMRTAEGSSAVWRLWEWEPGGEGG
IPASPIPGYEAMAAKIHALMPGRSLLPEEYLSLLAHSGLEEAAQSPYYYLQRGWLEGR
LHLEKGVELHREGRGFPFRRPKLRAQCKRCGSQGAQLPQKGTSSSASVVWTACPHCGG
PCPYCEACLTMGRVRFCTPLIRSAEQPSTSTWQRKTQGFDTEIYLQPWGLSDVQREAS
GSALLFLKGKNSVTRSKGKASSEYKPGRFLMWAVTGAGKTEMIFPMIHYTLTQGGRAA
VVTPRRDVVLELQPRLAKAFPGVQLVTLYGGSEQRWDQGDLVLATTHQLMRFYEAFDL
VIIDEIDAYPYHNNPMLQHAAEQVCRPDGAYILLSATPPEPLQREVRRGRLPHARVAA
RFHRHPLPVPLLLATPPLQRSMQQGSLPLRLKDKLQASLRRGAQLFVFVPKIASVGPL
TEILRSSFPGVPVEGTSSKDEQRAEKVTAFRQSQIRILVTTTILERGVTIPKSDVFIL
DADSRLFDAAALIQMAGREDHLRIRPGR"
misc_feature <97547..97657
/locus_tag="PM3016_92"
/note="Zinc finger domain of DnaJ and HSP40; Region:
DnaJ_zf; cd10719"
/db_xref="CDD:199908"
misc_feature 97901..98278
/locus_tag="PM3016_92"
/note="DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region;
Region: DEXDc; cd00046"
/db_xref="CDD:28927"
misc_feature 97922..97936
/locus_tag="PM3016_92"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 98174..98185
/locus_tag="PM3016_92"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 98429..98740
/locus_tag="PM3016_92"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(98486..98497,98552..98557,98633..98641)
/locus_tag="PM3016_92"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(98657..98659,98726..98728,98738..98740)
/locus_tag="PM3016_92"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene 98905..99672
/locus_tag="PM3016_93"
/db_xref="GeneID:11882056"
CDS 98905..99672
/locus_tag="PM3016_93"
/codon_start=1
/transl_table=11
/product="ComFC protein"
/protein_id="YP_005310229.1"
/db_xref="GI:379718098"
/db_xref="GeneID:11882056"
/translation="MWTDKVRRWLAVLLGESESLLSRRDPPCLICGTPGGKQALPVCR
LCWAKIPWIADVRCSVCGRPEECQDCLRRERTYYTKNRSVVRYNDHMKEWLALYKYRG
KESMREVIGPMLQHAYRLHRMAETAPAVEVLSYVPLSQQRFGERGFNQAEQLARELGQ
RTNVPVLPLLLRTQHTGKQSFKSRSDRLRDLRGVFAAEAQGTAWIREACRRGPVRVYL
IDDVYTTGSTLNECARTIREAVNVKAPVEVCGISWAR"
misc_feature 99076..99618
/locus_tag="PM3016_93"
/note="comF family protein; Region: comF; TIGR00201"
/db_xref="CDD:161762"
misc_feature 99337..>99621
/locus_tag="PM3016_93"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(99340..99342,99562..99570,99574..99588)
/locus_tag="PM3016_93"
/note="active site"
/db_xref="CDD:206754"
gene 99778..100191
/locus_tag="PM3016_94"
/db_xref="GeneID:11882057"
CDS 99778..100191
/locus_tag="PM3016_94"
/codon_start=1
/transl_table=11
/product="flagellar protein"
/protein_id="YP_005310230.1"
/db_xref="GI:379718099"
/db_xref="GeneID:11882057"
/translation="MSLNVENCNRCGKIYVKNNFGVCPACIKEIELQYEKCLKYLREN
KGSSMQELSEATEVPMKQIMKFIRDGRISIKNNPNMTYECDACGNSIREGNLCDSCRN
RLMKDTSDLHAQEERKRLYQEQHKATFQSKDKNDR"
misc_feature 99787..100179
/locus_tag="PM3016_94"
/note="flagellar operon protein TIGR03826; Region: YvyF"
/db_xref="CDD:163538"
gene 100293..100574
/locus_tag="PM3016_95"
/db_xref="GeneID:11882058"
CDS 100293..100574
/locus_tag="PM3016_95"
/codon_start=1
/transl_table=11
/product="anti-sigma-28 factor FlgM family protein"
/protein_id="YP_005310231.1"
/db_xref="GI:379718100"
/db_xref="GeneID:11882058"
/translation="MKINGSNQMNAISRYKKTAEPQQAAAPAKAKPKDQVEISSQAKE
LLESQSVKSAGAAADARAEKIQSLKQAVQSGTYSVDAGKLAERLLPYLT"
misc_feature 100398..100559
/locus_tag="PM3016_95"
/note="Anti-sigma-28 factor, FlgM; Region: FlgM;
pfam04316"
/db_xref="CDD:202970"
gene 100597..101097
/locus_tag="PM3016_96"
/db_xref="GeneID:11882059"
CDS 100597..101097
/locus_tag="PM3016_96"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310232.1"
/db_xref="GI:379718101"
/db_xref="GeneID:11882059"
/translation="MSFEALLDTMTELNEIHNSLLELAEQKRHVLIHNQVEQLMQIVT
KENKMLKRIGELEQQRVEVTGAFLMEKGYKPNPRVTVSDLTKILFNIEDKKLLLDKQK
QLAAAIRKLRELNRVNQQMIEHSLAYIDYSLDLIVGPPEDEFVYKNPQAGASGPKRQG
MFDSRA"
misc_feature 100609..101034
/locus_tag="PM3016_96"
/note="FlgN protein; Region: FlgN; pfam05130"
/db_xref="CDD:203170"
gene 101185..102792
/locus_tag="PM3016_97"
/db_xref="GeneID:11882060"
CDS 101185..102792
/locus_tag="PM3016_97"
/codon_start=1
/transl_table=11
/product="flagellar hook-associated protein FlgK"
/protein_id="YP_005310233.1"
/db_xref="GI:379718102"
/db_xref="GeneID:11882060"
/translation="MRSTFGGIEISKRSLFTQQAALTTTGHNIANANTKGYSRQVVNM
VASIPIEYPGLMRSNIPGQLGQGVEFDQINRIREKFLDNQFHNENKSLGDWSIRKDTL
EKLEAIMNEPSDTGIRQTIEGFWNAWQELSKSPENTTARVLVKERALAMTDAFNQTSR
QLSELATDLTESIGIKAQEANTALNQIAKLNEEIYRIEGLGNNANDLRDQRDLLMDDL
SKIVNITFTEEANGYNVRMGNVQLVAGRTVGTQFTTASMEAAAAAGDLSGGEVYGMIQ
SRDNYVGNYQFQLDNMLKTLVQGDMQIKLPSGAVIPEGTTLTIMKPDGTTEQKQFTGT
MADRTIGADTNVVVKGFNGLHALGYSGNDPISSGLEFFSLKTGYSEFSAASVTVNSTI
QSDVSNISSSFRTYMGADGNEKVVKGNNDMALLLANVRYERVDFDPTATGRPMLTDGT
FDEFFRSIIGQLGVQSQEATRQATNQQTLVDQVDSNRQAVSGVSLDEEMANMIKFQHA
YNAAARALTTFDEMLDKVINGMGTVGR"
misc_feature 101185..102789
/locus_tag="PM3016_97"
/note="flagellar hook-associated protein FlgK; Validated;
Region: flgK; PRK07739"
/db_xref="CDD:181099"
misc_feature <102628..102768
/locus_tag="PM3016_97"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene 102835..103731
/locus_tag="PM3016_98"
/db_xref="GeneID:11882061"
CDS 102835..103731
/locus_tag="PM3016_98"
/codon_start=1
/transl_table=11
/product="flagellar hook-associated protein 3"
/protein_id="YP_005310234.1"
/db_xref="GI:379718103"
/db_xref="GeneID:11882061"
/translation="MTMRVTQGMLNNQLLRNINSNLNRINTHQNELSTGRRINKPSDD
PVGMTFSLRYRSELSANDQYESNVTTAISWLEYTDTTLDQANTVIQRARELAVQGANG
TNPQQALDAIKTEIDQLYQQMVTIGNSEFNGKHVFNGQITDQAPYTAANAATTSVDTG
AIQFDIGAGVRVKANITGDEVFGQASSNTNVFKVLQDLSTALGAGNQNGINDALGRLD
QANDLFLQGRADVGARMNRIELAQSRLQDINVNLQTLQSRTEDADISEVITNLKTDEN
VYQASLSVGSKIISSSLVDFLR"
misc_feature 102841..103728
/locus_tag="PM3016_98"
/note="flagellar hook-associated protein FlgL; Validated;
Region: flgL; PRK07701"
/db_xref="CDD:181087"
misc_feature 102919..103260
/locus_tag="PM3016_98"
/note="Bacterial flagellin N-terminal helical region;
Region: Flagellin_N; pfam00669"
/db_xref="CDD:144315"
misc_feature 103474..>103674
/locus_tag="PM3016_98"
/note="Bacterial flagellin C-terminal helical region;
Region: Flagellin_C; pfam00700"
/db_xref="CDD:144340"
gene 103743..104324
/locus_tag="PM3016_99"
/db_xref="GeneID:11882062"
CDS 103743..104324
/locus_tag="PM3016_99"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310235.1"
/db_xref="GI:379718104"
/db_xref="GeneID:11882062"
/translation="MSLSISPQIGIHQQYARIGIDADLGQFQISQSPASLEITTTPAK
HDYHTEGGKLTIDNSAWRDALGNGPHLEVMNRIYSKSQSIALQGIAKIVEDGNRMAAI
HTKENAIAALAADSTQDIDFREYMYMGDAAYDNIDLNYEPARVIRDIQPAQVHINVTR
NAPEIQYNRGKLDIYMQQHASVEFTPPQIDYKI"
gene 104402..104845
/locus_tag="PM3016_100"
/db_xref="GeneID:11882063"
CDS 104402..104845
/locus_tag="PM3016_100"
/codon_start=1
/transl_table=11
/product="flagellar assembly protein FliW"
/protein_id="YP_005310236.1"
/db_xref="GI:379718105"
/db_xref="GeneID:11882063"
/translation="MRINTLALGEIEYTEEEVLTFPNGIPGFEEYTRFLIIGRGEAFS
YLQSLEDEGISFVILNPFDIYRAYEFELSQEDQDELEIRSEEGIEIWSIVTLGKQPEQ
YTVNLMGPLVVNTVSCLGKQVVLHHSPYGTKHSLVELIANSKEGE"
misc_feature 104402..104836
/locus_tag="PM3016_100"
/note="flagellar assembly protein FliW; Provisional;
Region: PRK13285"
/db_xref="CDD:183948"
gene 104851..105087
/locus_tag="PM3016_101"
/db_xref="GeneID:11882064"
CDS 104851..105087
/locus_tag="PM3016_101"
/codon_start=1
/transl_table=11
/product="carbon storage regulator CsrA"
/protein_id="YP_005310237.1"
/db_xref="GI:379718106"
/db_xref="GeneID:11882064"
/translation="MLVLSRKKGESIMIGDGIEVIVLGVEGETVKIGLKAPRQQSILR
KEIYLALKESNQEASTAQDGSGNQIDQLKKLLGK"
misc_feature 104851..105039
/locus_tag="PM3016_101"
/note="carbon storage regulator; Provisional; Region:
PRK01712"
/db_xref="CDD:179324"
gene 105253..106137
/locus_tag="PM3016_102"
/db_xref="GeneID:11882065"
CDS 105253..106137
/locus_tag="PM3016_102"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310238.1"
/db_xref="GI:379718107"
/db_xref="GeneID:11882065"
/translation="MRINHNISALNTHRQLGTNTANAAKNIEKLSSGLRINRAGDDAA
GLAISEKMRGQIRGLDQASRNAQDGISLIQTGEGALQEVHSILQRQRELAVQSANDTN
VTADRTALEAEFDQLSSEISRIKDNTTFNTQKLLDGSAAAALKIHVGADAGQTIDIDL
DTAGVDLTAIHTAASGATIATQTDANTAITTINTQIESVSSGRSYLGALQNRLEHTIN
NLNNASENLTASESRIRDVDMAKEMMEQTKNNILSQAAQAMLAQANQQPQAYCSSSVN
IIYPGGWRNAIPLSFFVS"
misc_feature 105253..106011
/locus_tag="PM3016_102"
/note="flagellin; Provisional; Region: PRK12804"
/db_xref="CDD:183759"
misc_feature 105259..105669
/locus_tag="PM3016_102"
/note="Bacterial flagellin N-terminal helical region;
Region: Flagellin_N; pfam00669"
/db_xref="CDD:144315"
misc_feature 105844..>106008
/locus_tag="PM3016_102"
/note="Bacterial flagellin C-terminal helical region;
Region: Flagellin_C; pfam00700"
/db_xref="CDD:144340"
gene 106249..107478
/locus_tag="PM3016_103"
/db_xref="GeneID:11882066"
CDS 106249..107478
/locus_tag="PM3016_103"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310239.1"
/db_xref="GI:379718108"
/db_xref="GeneID:11882066"
/translation="MTTLVDTLIPEYVKRFTCIGGACEDTCCSGWTVNIDQHTLKKYK
KVKHTEFKTRLRENVVKNDKNPTENFAASMKLKQSRCSFLNEENLCDIQLNLGESFLC
TTCSVYPRRTNKVNGKLEQALSVSCPEAARLVMLNEGGISFEQGQDQKDAFRWIATNI
ETRGGGVSDWRSFFEEYRYVTIAILQNRAYTLEERLLIIGLMFGELQESVDTGKPESI
PDVLGNYLKCSEDGTFQGAFNEVAKRLDIQVRLCRELVVLGLKHTPGSTRYLECSRAM
MAGLGMEDGAEDHQVQESYEKAYGTYYLPFIQEHGYMLENYLVNYVFKNCMPLDSTSL
FESYARMIMHYSLIKIHMVGIAGHEQGLTSDSVIKLIQSISKTFEHSIEYFEKIMTLV
KENGFMSMPYMSILIKN"
gene 107747..108574
/locus_tag="PM3016_104"
/db_xref="GeneID:11882067"
CDS 107747..108574
/locus_tag="PM3016_104"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310240.1"
/db_xref="GI:379718109"
/db_xref="GeneID:11882067"
/translation="MRINHNISALNTHRQLGTNSANAAKNIEKLSSGLRINRAGDDAA
GLAISEKMRGQIRGLDQASRNAQDGISLIQTGEGALQEVHSILQRQRELAVQSANDTN
VTADRTALEAEFDQLSNEIGRIKDNTTFNTQKLLDGSATAALKIHVGADASQTIDIDL
DTAGVDLTAIHTAASGATIATQTDANTAITTINTQIESVSSGRSYLGALQNRLEHTIN
NLNNASENLTASESRIRDVDMAKEMMEQTKNNILSQAAQAMLAQANQQPQGVLQLLR"
misc_feature 107747..108571
/locus_tag="PM3016_104"
/note="flagellin; Provisional; Region: PRK12804"
/db_xref="CDD:183759"
misc_feature 107753..108169
/locus_tag="PM3016_104"
/note="Bacterial flagellin N-terminal helical region;
Region: Flagellin_N; pfam00669"
/db_xref="CDD:144315"
misc_feature 108338..>108502
/locus_tag="PM3016_104"
/note="Bacterial flagellin C-terminal helical region;
Region: Flagellin_C; pfam00700"
/db_xref="CDD:144340"
gene 108847..109242
/locus_tag="PM3016_105"
/db_xref="GeneID:11882068"
CDS 108847..109242
/locus_tag="PM3016_105"
/codon_start=1
/transl_table=11
/product="flagellar protein FlaG protein"
/protein_id="YP_005310241.1"
/db_xref="GI:379718110"
/db_xref="GeneID:11882068"
/translation="MDTPITGSGGVDRIPAASPALKSTNKEAEAAASSAVDSIHSVKE
MKLAEYRGEEITISDEQMVKALERAIKAVEGKNTSLNFSIHEKTKQIMVKVIDKESGQ
IIREVPPEKNLDFLAKLWEMAGILVDEKR"
misc_feature <108988..109236
/locus_tag="PM3016_105"
/note="FlaG protein; Region: FlaG; pfam03646"
/db_xref="CDD:202716"
gene 109264..110760
/locus_tag="PM3016_106"
/db_xref="GeneID:11882069"
CDS 109264..110760
/locus_tag="PM3016_106"
/codon_start=1
/transl_table=11
/product="flagellar capping protein"
/protein_id="YP_005310242.1"
/db_xref="GI:379718111"
/db_xref="GeneID:11882069"
/translation="MVNRITGITSGLDTDTLISQLMKANRIPVDKMAQQKQTVEWQRD
AYKEINAKILDFRNNKLFNFKREGTFAAKTLTTVGDTSAVGAKATSSSVPGTLKVEVV
SLAQPSVSTSTAAITADPAFKTNVPLKDTEFVAGFTPVAPATTPPTYQEFDITVNSKV
IRINPNTDSLDSMMSKISSQAGVTAFYDSTNRVVSMSGGGQAISVAGDFLTNTLKLGA
GSAPVDAQLKINGVATTRASNSFSVNGVDITLNGVGTTTIDVKSDTDKVMESIKTFIT
DYNSMLKTIQEKLGEDKFRDYTPLTSEQKEAMKDKDIELWEGKAKSGLLRNDSILSAL
ANTMRSSMSTPVETGNPNYKTLSAIGIDSGSYLEKGQLYIKSETKLREAIEKDPQAVI
NLFTQDGNGDTDRSDVGVGERLYQDLMGSLEKIAKKAGTSAFSDMSVFKSDSDLGKRL
TDLNTRIAKGNERLADIENRYYKQFAAMEAAMSKYNSQSSYLANAFSS"
misc_feature 109264..110751
/locus_tag="PM3016_106"
/note="flagellar capping protein; Validated; Region: fliD;
PRK07737"
/db_xref="CDD:181097"
misc_feature 109291..109590
/locus_tag="PM3016_106"
/note="Flagellar hook-associated protein 2 C-terminus;
Region: FliD_N; pfam02465"
/db_xref="CDD:202247"
misc_feature 109933..110724
/locus_tag="PM3016_106"
/note="Flagellar hook-associated protein 2 C-terminus;
Region: FliD_C; pfam07195"
/db_xref="CDD:115824"
gene 110798..111196
/locus_tag="PM3016_107"
/db_xref="GeneID:11882070"
CDS 110798..111196
/locus_tag="PM3016_107"
/codon_start=1
/transl_table=11
/product="flagellar protein FliS"
/protein_id="YP_005310243.1"
/db_xref="GI:379718112"
/db_xref="GeneID:11882070"
/translation="MLQAQQNKYLSTSVQTASPAHLLMMLYDGAIRFCRAGIEAMKQN
RYEEVNRNLVKAQDIVRELMVTLDPKQPISADLTRLYDYFIFRLVEANMKKQSEPAEE
VLEYLVSLKETWIQASRAAAGGQAVGATHA"
misc_feature 110822..111175
/locus_tag="PM3016_107"
/note="Flagellin-specific chaperone FliS [Cell motility
and secretion / Intracellular trafficking and secretion /
Posttranslational modification, protein turnover,
chaperones]; Region: FliS; COG1516"
/db_xref="CDD:31705"
gene 111189..111527
/locus_tag="PM3016_108"
/db_xref="GeneID:11882071"
CDS 111189..111527
/locus_tag="PM3016_108"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310244.1"
/db_xref="GI:379718113"
/db_xref="GeneID:11882071"
/translation="MREHIEALETLTAGMASRLPEAEYEELEQFVREREEIILSIRRG
LQTNPEAASLYAERVQQVLRQDEAIMECMEALRSEAAGQLQKVDTARTQRGAYDKAYT
PDSLFFDKRK"
gene 111813..112010
/locus_tag="PM3016_109"
/db_xref="GeneID:11882072"
CDS 111813..112010
/locus_tag="PM3016_109"
/codon_start=1
/transl_table=11
/product="protein CspC"
/protein_id="YP_005310245.1"
/db_xref="GI:379718114"
/db_xref="GeneID:11882072"
/translation="MQGKVKWFNAEKGYGFIEREDGGDVFVHFSAIQTEGFKTLEEGQ
SVEFDIVEGARGPQAANVIKL"
misc_feature 111813..111998
/locus_tag="PM3016_109"
/note="Cold-Shock Protein (CSP) contains an S1-like
cold-shock domain (CSD) that is found in eukaryotes,
prokaryotes, and archaea. CSP's include the major
cold-shock proteins CspA and CspB in bacteria and the
eukaryotic gene regulatory factor Y-box protein; Region:
CSP_CDS; cd04458"
/db_xref="CDD:88424"
misc_feature order(111831..111833,111858..111860,111888..111890,
111975..111977)
/locus_tag="PM3016_109"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:88424"
misc_feature order(111849..111869,111885..111896)
/locus_tag="PM3016_109"
/note="RNA-binding motif; other site"
/db_xref="CDD:88424"
gene 112226..112783
/locus_tag="PM3016_110"
/db_xref="GeneID:11882073"
CDS 112226..112783
/locus_tag="PM3016_110"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310246.1"
/db_xref="GI:379718115"
/db_xref="GeneID:11882073"
/translation="MKFNIRGVNIEVTDALRDHVEKKLSRLEKYFEAPPTSEVSVSLS
VLKGLQAVEVTIPLPNLLLRAEERQADMYASVDLVVDKLERQIRKAKTKANRKIRQEG
GLKDLFRASEPDDSYVAVHEEEDDFELVRTKRFTLKPMDIDEAILQMNMVGHNFFVFA
NSDTSEVNVVYKRNDGKYGLIEPAK"
misc_feature 112229..112504
/locus_tag="PM3016_110"
/note="RaiA ('ribosome-associated inhibitor A', also known
as Protein Y (PY), YfiA, and SpotY, is a stress-response
protein that binds the ribosomal subunit interface and
arrests translation by interfering with aminoacyl-tRNA
binding to the ribosomal A site; Region: RaiA; cd00552"
/db_xref="CDD:29642"
misc_feature order(112235..112237,112241..112243,112247..112249,
112301..112303,112310..112312,112328..112333,
112343..112345,112355..112357,112388..112390,
112397..112408,112415..112417,112421..112423,
112430..112432,112436..112438,112445..112447,
112487..112492,112502..112504)
/locus_tag="PM3016_110"
/note="30S subunit binding site; other site"
/db_xref="CDD:29642"
gene 113132..115843
/locus_tag="PM3016_111"
/db_xref="GeneID:11882074"
CDS 113132..115843
/locus_tag="PM3016_111"
/codon_start=1
/transl_table=11
/product="protein SecA"
/protein_id="YP_005310247.1"
/db_xref="GI:379718116"
/db_xref="GeneID:11882074"
/translation="MLGLVKKIFGDPNDRELKRLWKAVEYINSLEPQFEGLSDEELRG
KTAEFRERLEKGETLDDLLPEAFAVVREAGKRALGKRHYDVQLIGGMVLHEGKIAEMR
TGEGKTLVGTLPVYLNALAGKGVHVVTVNDYLAQRDSAEMGQLHNFLGLTVGVNLSNM
SHEAKQAAYACDITYGTNNEFGFDYLRDNMVVYKEQMVQRPLSYCVIDEVDSILVDEA
RTPLIISGQAAKSTEMYLIADQVVSRLKEEEDYIIDIKVRSVTLTEAGVAKVERSFGI
ENLFDHEHVTINHHIQQALKAHAIMKRDVDYVVSEGEIMIVDEFTGRLMTGRRYSEGL
HQAIEAKEHLQVQNESMTLATITLQNYFRMYRKLSGMTGTAKTEEEEFKKIYGLEVIT
IPTNKPTIRQDIPDVVYKSVQSKFRAVVNEIAERHKNKQPVLVGTVSIENSEVLSEML
KKKGIPHKVLNAKYHAEEAEIVSRAGQLGAVTIATNMAGRGTDIMLGEGVAELGGLHI
IGTERHESRRIDNQLRGRAGRQGDPGSSQFYLSLEDELMRRFGAENIMGMMDRLGFEE
DQPIESKLISKAIESAQKRVEGNNFDVRKVVLQYDDVMNQQREIIYKQRREVIESENI
REIVMGMITPVIDRIVDAHCAEDLPEEWDLQAIVDYCNGTFLHEGQLKAEELEGKEKE
DIAEYLKGVLTRLYEEREAAIGAEFMREFEKVVLLRAVDSKWMDHIDAMDQLRQGIHL
RAYGGTDPLREYQFEGYEMFQEMIQNIQEEVATYIMKAHVETNLVREAVVDENEMATN
GEPAVNRPAQASEVIGRNGSVPLRQRQEVQGVPRHSEGITNVKRPGERPGRKKREVGA
RPRSPFSLNRHKVIIKLYNEVLTMLEADVKRDMQETAKRLAELRGSL"
misc_feature 113132..115474
/locus_tag="PM3016_111"
/note="preprotein translocase subunit SecA; Reviewed;
Region: PRK12904"
/db_xref="CDD:183826"
misc_feature 113408..113782
/locus_tag="PM3016_111"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 113810..114148
/locus_tag="PM3016_111"
/note="SecA preprotein cross-linking domain; Region:
SecA_PP_bind; smart00958"
/db_xref="CDD:198026"
misc_feature 114338..114748
/locus_tag="PM3016_111"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(114443..114454,114512..114517,114584..114592)
/locus_tag="PM3016_111"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(114608..114610,114695..114697,114707..114709,
114716..114718)
/locus_tag="PM3016_111"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene 115887..116888
/locus_tag="PM3016_112"
/db_xref="GeneID:11882075"
CDS 115887..116888
/locus_tag="PM3016_112"
/codon_start=1
/transl_table=11
/product="protein PrfB"
/protein_id="YP_005310248.1"
/db_xref="GI:379718117"
/db_xref="GeneID:11882075"
/translation="MSAPDFWDDNEKAQKLIAEMNAIKGSIDQLQALTAEYEDLELMM
ELVQEENDESLASELTSGITALVKKLEGFELQLLLSQPYDKLNAILELHPGAGGTESQ
DWAEMLLRMYRRWAEKRGFKVEVLDYLPGDEAGVKSVTLLIQGYNAYGYLKAEKGVHR
LVRISPFDSSGRRHTSFVSCDIMPEIDDDVEIEIRTEDLKVDTYRASGAGGQHINTTD
SAVRITHMPTGVVVSCQTERSQIKNRDRAMKMLRSKLYEKKIEEQQKQLAEIRGEVAD
IAWGSQIRSYVFHPYSMVKDHRTGEETGNVGAVMDGDLDPFIDAYLRGRINKKDREE"
misc_feature 115887..116864
/locus_tag="PM3016_112"
/note="peptide chain release factor 2; Provisional;
Region: PRK06746"
/db_xref="CDD:75726"
misc_feature 115989..116351
/locus_tag="PM3016_112"
/note="This domain is found in peptide chain release
factors; Region: PCRF; smart00937"
/db_xref="CDD:198005"
misc_feature 116439..116780
/locus_tag="PM3016_112"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 117063..118196
/locus_tag="PM3016_113"
/db_xref="GeneID:11882076"
CDS 117063..118196
/locus_tag="PM3016_113"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310249.1"
/db_xref="GI:379718118"
/db_xref="GeneID:11882076"
/translation="MADRRKKTVRKAAPRKVGGRLSLEAAQDKRGDGASPAKVVHEAG
LRERTDAHAPDARSGESPPASQGLGPRGGVRPAEGSRMNKRSRKGGGGRPGWMQHIRE
YLLLLLGSLVVAVSFNTFLGPNQVASGGVTGISVIVEKLFGIEPAFTQWALNIPLFLL
GTLLLGRQFGAKTLVGSIVLPLFVLLTKDLPSMTDNVLLASIYGGIGIGAGLGLVFRG
RASTGGMDLAAQMLHRYTGISLGLCVALLDGLIILTAGVFLSPEKAMYALIGLFVTTK
TINIVQLGLSYSKVAFIISEAEEEIREGILYELDRGLTKLQATGGYTGESKRVLMVVV
SQTEVSRLKELVRRIDPGAFVILSDTNEVLGEGFKLTGSSLSP"
misc_feature 117351..118172
/locus_tag="PM3016_113"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1284"
/db_xref="CDD:31475"
misc_feature 117387..117614
/locus_tag="PM3016_113"
/note="Uncharacterized BCR, YitT family COG1284; Region:
DUF161; pfam02588"
/db_xref="CDD:202297"
misc_feature <117705..117896
/locus_tag="PM3016_113"
/note="Uncharacterized BCR, YitT family COG1284; Region:
DUF161; pfam02588"
/db_xref="CDD:202297"
misc_feature 117993..118157
/locus_tag="PM3016_113"
/note="Uncharacterized protein conserved in bacteria
(DUF2179); Region: DUF2179; pfam10035"
/db_xref="CDD:204383"
gene complement(118212..119021)
/locus_tag="PM3016_114"
/db_xref="GeneID:11882077"
CDS complement(118212..119021)
/locus_tag="PM3016_114"
/codon_start=1
/transl_table=11
/product="protein FdhD"
/protein_id="YP_005310250.1"
/db_xref="GI:379718119"
/db_xref="GeneID:11882077"
/translation="MHDEAVTPRTIWRYDGGALRPLRDTIVRETPLTVRVNGEEFATV
VCSPGDLEDFVVGFLASEGVLRLHSEITSLQLDPWKGFAYVELQNPLPARQRDQSKRF
IGSCCGKSRQFYFQSDARTARTVLSRHTVTPDQCLALMALLQEGSDVFRSTGGVHNAA
LCSTDALLVRRSDIGRHNALDKLFGHSLRQGLPLHDKLLAFSGRVSSEVLLKAAKMGI
GLLLSKSAPTDLALNLADDLGITVIGFIRGSSFNVYSHPERVQPTAGSARA"
misc_feature complement(118245..119021)
/locus_tag="PM3016_114"
/note="formate dehydrogenase accessory protein; Reviewed;
Region: PRK00724"
/db_xref="CDD:179098"
gene complement(119028..121382)
/locus_tag="PM3016_115"
/db_xref="GeneID:11882078"
CDS complement(119028..121382)
/locus_tag="PM3016_115"
/codon_start=1
/transl_table=11
/product="formate dehydrogenase subunit alpha"
/protein_id="YP_005310251.1"
/db_xref="GI:379718120"
/db_xref="GeneID:11882078"
/translation="MGQTKHSGQIPLPSLPDPSLWASRVPFGLNRIKPRHIRDTFKAV
WDNRDQLPYAYRILTQGVCDGCALGVAGLQDQTLTGPHLCTTRLNVLRLNTMPAIPRD
VLHADIDELRRMDSTALRGLGRLPYPLIRRKGQRRFTRLSWDEALDTIAAKISAVNPK
QLAFYLTARGITNESYYAAAKVARFLGTNHIDNASRICHSPSKTALKRSVGIGASSCS
YKDWIGTDVLVFWGSVAANNQPVSTKYMYAAKRRGTRIIVINPYHEPSMDQYWIPSVP
ESALFGTKLTDDFYQVNIGGDIAFMNGVMKVWFEMERAQPGSALDHAFLAAHTNGLEE
LRAHVEAQPWELLEQSSGLSRERMKEFAVLLAEAKSGVFVWSMGLTQHRFGTDNISQV
ANLALLRGFLGREHCGLMPIRGHSGVQGSGEMGADPFSLPGGEIGDAAARRRIEALWG
FPLPDWQGDIVGVSLENAMLPEDHERRLRVFYTSGGNFLETMPDPEFIRQCLERVELR
VHQDIILNTSTLVDAAETVIVLPAMTRYEQPGGGTSTSTERMVYFSPEIEGPRMPEAR
AEWQIYAELAARVKPQEAKRLGLQSAADIRREIAEAAPNYDGIQHLKSRGDVFQWGGA
WLCEGGICPTPDGRGRLLPIELPELRKPEGHFFVTTRRGKQFNSMIYSETDPFNGADR
YHVLMHPEDGRKLGLREDDAIVVYNRYGAMHGRAKWEPVKPGNIEVHWPEGNVLLPTG
VYEPHAGIPEYNTSVIVEKAETYHAMKDTKYVERRIEELELESE"
misc_feature complement(119100..121334)
/locus_tag="PM3016_115"
/note="oxidoreductase alpha (molybdopterin) subunit;
Region: Fdhalpha-like; TIGR01701"
/db_xref="CDD:162496"
misc_feature complement(119460..121205)
/locus_tag="PM3016_115"
/note="Molybdopterin-Binding (MopB) domain of the MopB
superfamily of proteins, a large, diverse, heterogeneous
superfamily of enzymes that, in general, bind
molybdopterin as a cofactor. The MopB domain is found in a
wide variety of molybdenum- and...; Region:
Molybdopterin-Binding; cl09928"
/db_xref="CDD:209095"
misc_feature complement(order(119769..119771,119784..119789,
119835..119837,119844..119852,119922..119930,
120255..120257,120492..120494,120600..120608,
120669..120674,120681..120683,120687..120692,
120786..120794,120798..120800))
/locus_tag="PM3016_115"
/note="molybdopterin cofactor binding site; other site"
/db_xref="CDD:73198"
misc_feature complement(119109..119420)
/locus_tag="PM3016_115"
/note="Molybdopterin-Binding, C-terminal (MopB_CT) domain
of the MopB superfamily of proteins, a large, diverse,
heterogeneous superfamily of enzymes that, in general,
bind molybdopterin as a cofactor. The MopB domain is found
in a wide variety of molybdenum-...; Region: MopB_CT;
cl09929"
/db_xref="CDD:209096"
misc_feature complement(order(119127..119132,119181..119183,
119193..119195,119379..119390,119394..119399))
/locus_tag="PM3016_115"
/note="molybdopterin cofactor binding site; other site"
/db_xref="CDD:30307"
gene complement(121642..121998)
/locus_tag="PM3016_116"
/db_xref="GeneID:11882079"
CDS complement(121642..121998)
/locus_tag="PM3016_116"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310252.1"
/db_xref="GI:379718121"
/db_xref="GeneID:11882079"
/translation="MTKLEAEFSNLVKAFRKKHMGKGPREIRTTFCRNWAICEMEGHL
SPVEKFIATATDGKQALRTARTEMVKEMYRTHRPVEMEELLGARFVDLFVDIDLDQDI
GMSIFVFDRDIPHKTG"
misc_feature complement(121651..121998)
/locus_tag="PM3016_116"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG5609"
/db_xref="CDD:35168"
gene 122426..123472
/locus_tag="PM3016_117"
/db_xref="GeneID:11882080"
CDS 122426..123472
/locus_tag="PM3016_117"
/codon_start=1
/transl_table=11
/product="protein ArgC"
/protein_id="YP_005310253.1"
/db_xref="GI:379718122"
/db_xref="GeneID:11882080"
/translation="MSQVRAAIVGATGYGGAETIRLLLAHPHVAITSVVSSSNAGASI
AEGFPHLNGILTDKLDAVDVDLLKEKADVVFLATPHGISSELSPKLLDAGLKVIDISG
DFRLKNGEDYEQWYKHKPADPAYIDKAVYGLSEVFGDDVKGTDFVSNPGCYPTATALG
LAPLAAHRWIDPKSIIVDAKSGVSGAGRGLSLTVHYSEMNENFLAYKVNKHQHTPEIE
QTISRLAGEEAVITFTTHLVPMTRGILSTIYVNLKEARSEDEIFALFRSYYEGRRFVR
ILEKGKFPATKQVLGSNYCDIGLSLDSRTGRLTVISVIDNVVKGAAGQAIQNLNLMMG
WDEGTGLAFSPVYP"
misc_feature 122429..123469
/locus_tag="PM3016_117"
/note="N-acetyl-gamma-glutamyl-phosphate reductase;
Validated; Region: argC; PRK00436"
/db_xref="CDD:179024"
misc_feature 122438..122854
/locus_tag="PM3016_117"
/note="Semialdehyde dehydrogenase, NAD binding domain;
Region: Semialdhyde_dh; smart00859"
/db_xref="CDD:197927"
misc_feature 122933..123382
/locus_tag="PM3016_117"
/note="Semialdehyde dehydrogenase, dimerisation domain;
Region: Semialdhyde_dhC; pfam02774"
/db_xref="CDD:202385"
gene 123513..124742
/locus_tag="PM3016_118"
/db_xref="GeneID:11882081"
CDS 123513..124742
/locus_tag="PM3016_118"
/codon_start=1
/transl_table=11
/product="protein ArgJ"
/protein_id="YP_005310254.1"
/db_xref="GI:379718123"
/db_xref="GeneID:11882081"
/translation="MTVGKAAFVVVPEGSVTTPAGFRAGGLHCGLKKTERHDLGVIVC
EVPAQAAGVYTLNQFQAAPLGVTKESIAEGGTLQVMLVNSGNANACTGQQGVDDARAM
RAAGAKAFGVAEHLVGVTSTGVIGELLPMGKVLPGIERLPAGVSADGGDDFCQAILTT
DLVKKEICVSLTVGGTTVHIAGAAKGSGMIHPNMATMLGFITTDANVASADLQKLLNE
VTDSTFNMITVDGDTSTNDMVVVMASGLAGGEALTPQHADWEAFKAAFAFVGEHLAKA
IARDGEGATKLVEVTITGADSKEAARAIAKTVIGSSLVKTAVYGADANWGRIIAAVGR
AGYKVETEKVDVRLGDITVLEQSRPVKFDEERAAEYLKGDFVLIHVDLHMGDVSATAW
GCDLTYDYVRINAAYRT"
misc_feature 123567..124739
/locus_tag="PM3016_118"
/note="Ornithine acetyltransferase (OAT) family; also
referred to as ArgJ. OAT catalyzes the first and fifth
steps in arginine biosynthesis, coupling acetylation of
glutamate with deacetylation of N-acetylornithine, which
allows recycling of the acetyl group in...; Region: OAT;
cd02152"
/db_xref="CDD:73147"
misc_feature order(123678..123692,123780..123782,123885..123890,
124077..124079,124089..124091,124200..124211,
124443..124451,124458..124463,124467..124472,
124476..124478,124482..124493,124497..124502,
124509..124520,124572..124574,124698..124706)
/locus_tag="PM3016_118"
/note="heterotetramer interface [polypeptide binding];
other site"
/db_xref="CDD:73147"
misc_feature order(123876..123881,123987..123992,124065..124067,
124074..124076,124098..124100,124722..124724,
124734..124739)
/locus_tag="PM3016_118"
/note="active site pocket [active]"
/db_xref="CDD:73147"
misc_feature 124095..124100
/locus_tag="PM3016_118"
/note="cleavage site"
/db_xref="CDD:73147"
gene 124849..125640
/locus_tag="PM3016_119"
/db_xref="GeneID:11882082"
CDS 124849..125640
/locus_tag="PM3016_119"
/codon_start=1
/transl_table=11
/product="acetylglutamate kinase"
/protein_id="YP_005310255.1"
/db_xref="GI:379718124"
/db_xref="GeneID:11882082"
/translation="MKDCFVMKCGGSTLAALPDAFFEDLRILQEQGLIPVIVHGGGPA
ISDTLGKLGIETEFVNGLRRTDERVLDVVEMVLAGQINKEIVRKIQCSGAKAIGLSGV
DGHLIQAEPVKNAHEVGLVGDVTNVNGELVQGIVAMGYMPVIAPVGIGADGGQRYNIN
ADTAAGAVASHIGVERMIVVTDVPGILKTVDGEKRVLPSVTVREIDEMIESGEIYGGM
IPKVRAAVQCIQGKVREVVIVNGSEPAVLSRVLREGGIGTRIVRN"
misc_feature 124861..125628
/locus_tag="PM3016_119"
/note="AAK_NAGK-like: N-Acetyl-L-glutamate kinase
(NAGK)-like . Included in this CD are the Escherichia coli
and Pseudomonas aeruginosa type NAGKs which catalyze the
phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in
the second step of arginine...; Region: AAK_NAGK-like;
cd04238"
/db_xref="CDD:58604"
misc_feature order(124870..124872,124876..124881,124969..124974,
125389..125391,125407..125409,125485..125487,
125491..125493,125509..125511)
/locus_tag="PM3016_119"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:58604"
misc_feature order(124969..124974,125035..125037,125320..125325,
125329..125331)
/locus_tag="PM3016_119"
/note="N-acetyl-L-glutamate binding site [chemical
binding]; other site"
/db_xref="CDD:58604"
gene 125682..126875
/locus_tag="PM3016_120"
/db_xref="GeneID:11882083"
CDS 125682..126875
/locus_tag="PM3016_120"
/codon_start=1
/transl_table=11
/product="acetylornithine and succinylornithine
aminotransferase"
/protein_id="YP_005310256.1"
/db_xref="GI:379718125"
/db_xref="GeneID:11882083"
/translation="MGEAQSALFPNYARYPFAFVKGEGSRLWDENGKEYLDLMCGIAV
TNLGHAPKRVGDRLKEQIDTLWHTSNLYRIPNQEKLAGLLVQHSCADAVFFSNSGAEA
NEAAIKLARRYFQKVLGQPERCEIITFHMSFHGRTLATLTATGQDKVKEGFAPLPQGF
VYAPFNDAEALEKLVSSRTCAIMLEMVQGEGGVNAADPSFVKRIVELCEEHGLLLIVD
EIQTGMGRTGKLFAYEHYGIEPDIFTLAKGLGSGMPIGAMLGKEKLREAFSAGSHGST
FGGNYLATAAGLATLEVMLEEKLPERAAELGAYAVGELKKQLAGNPLVTEVRGLGLLL
GIGLTVPAGEIIGSLLDQGVLVISAGPNVIRLAPSLLISKEDLDRGLAAITAELAKKA
AAAAV"
misc_feature 125691..126821
/locus_tag="PM3016_120"
/note="acetylornithine aminotransferase; Provisional;
Region: PRK02627"
/db_xref="CDD:179453"
misc_feature 125712..126821
/locus_tag="PM3016_120"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature order(125973..125981,126078..126083,126087..126089,
126234..126236,126333..126335,126339..126344,
126420..126422)
/locus_tag="PM3016_120"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature order(125976..125981,126078..126083,126234..126236,
126333..126335,126342..126344,126420..126422)
/locus_tag="PM3016_120"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature 126420..126422
/locus_tag="PM3016_120"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene 126971..127927
/locus_tag="PM3016_121"
/db_xref="GeneID:11882084"
CDS 126971..127927
/locus_tag="PM3016_121"
/codon_start=1
/transl_table=11
/product="protein ArgF"
/protein_id="YP_005310257.1"
/db_xref="GI:379718126"
/db_xref="GeneID:11882084"
/translation="MAGTTEQDIEISLKGRDFIGLVDYAPEEIQYLIDLAINLKKKNQ
AGEVFQPLKGKTLGMIFEKSSTRTRVSFEVGMYQLGGHALFLSKNDLQLGRGETIHDT
AQTMSRYLDGIMIRTYAHRTVIELARGATVPVINGLTDLSHPCQALADYQTIQEKKGR
LQGLKMAYIGDGNNMVHSLMMGAAKLGMNFAVATPQGYEPDSEVLELSREAASKAGSS
IWVGTDPVEAIADADVVYTDVWASMGFEAEQKERELAFKNFQVNEALVKYAKKDYLFM
HCLPAHRGEEVSEGVIDGANSVIFDQAENRLHAQKAVMAAIM"
misc_feature 127004..127924
/locus_tag="PM3016_121"
/note="ornithine carbamoyltransferase; Provisional;
Region: PRK00779"
/db_xref="CDD:179122"
misc_feature 127016..127441
/locus_tag="PM3016_121"
/note="Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain; Region: OTCace_N; pfam02729"
/db_xref="CDD:202362"
misc_feature 127454..127921
/locus_tag="PM3016_121"
/note="Aspartate/ornithine carbamoyltransferase, Asp/Orn
binding domain; Region: OTCace; pfam00185"
/db_xref="CDD:201065"
gene 128056..129297
/locus_tag="PM3016_122"
/db_xref="GeneID:11882085"
CDS 128056..129297
/locus_tag="PM3016_122"
/codon_start=1
/transl_table=11
/product="protein ArgG"
/protein_id="YP_005310258.1"
/db_xref="GI:379718127"
/db_xref="GeneID:11882085"
/translation="MAKQKIVLAYSGGLDTSIILKWLKETYDAEIIAFTADIGQKEEL
DGLEEKALSTGASKVYIDDLREEFAKDFIYPMFQAGALYEGQYLLGTSIARPLIAKRM
VEIALAEGATAIAHGATGKGNDQVRFELTAAALTPDIEVIAPWRLESFREQFPGRAEM
IAYAEKHGIPVTASASKPYSMDRNLLHISYESGVLEDPWFDASAPENKEMFLLSADPE
DAPDQAEYIELEFEQGNCVAINGERMIPLHIMEKLNELGGKHGVGRVDMVENRFVGMK
SRGVYETPGGAILFTAHRKIESLTMDREVMHLRDSLISKYASLVYNGFWFAPERLAVQ
ALVTESQKNVSGTVRLKLYKGNVIAAGVKSPVSLYNPNIATMEADPTKAYDQGDATGF
IRLNALRLRVAAGVKKNADQA"
misc_feature 128056..129279
/locus_tag="PM3016_122"
/note="Argininosuccinate synthase [Amino acid transport
and metabolism]; Region: ArgG; COG0137"
/db_xref="CDD:30486"
misc_feature 128071..129252
/locus_tag="PM3016_122"
/note="Argininosuccinate synthase. The Argininosuccinate
synthase is a urea cycle enzyme that catalyzes the
penultimate step in arginine biosynthesis: the
ATP-dependent ligation of citrulline to aspartate to form
argininosuccinate, AMP and pyrophosphate . In...; Region:
Argininosuccinate_Synthase; cd01999"
/db_xref="CDD:30186"
misc_feature order(128080..128082,128101..128103,128155..128157,
128161..128163,128173..128175,128338..128340,
128404..128406,128437..128439,128593..128598)
/locus_tag="PM3016_122"
/note="ANP binding site [chemical binding]; other site"
/db_xref="CDD:30186"
misc_feature order(128314..128316,128326..128331,128422..128424,
128434..128436,128593..128601,128620..128622,
128626..128628,128860..128862,128896..128898,
129016..129018)
/locus_tag="PM3016_122"
/note="Substrate Binding Site II [chemical binding]; other
site"
/db_xref="CDD:30186"
misc_feature order(128407..128412,128419..128427)
/locus_tag="PM3016_122"
/note="Substrate Binding Site I [chemical binding]; other
site"
/db_xref="CDD:30186"
gene 129476..130891
/locus_tag="PM3016_123"
/db_xref="GeneID:11882086"
CDS 129476..130891
/locus_tag="PM3016_123"
/codon_start=1
/transl_table=11
/product="protein ArgH"
/protein_id="YP_005310259.1"
/db_xref="GI:379718128"
/db_xref="GeneID:11882086"
/translation="MSKLWGGRFTKKTDQLVEEYTASILFDKELAEEDIQGSLAHVTM
LGKCGILPLDDVEKIKDGLHKVQNMIRRGEMEFTVSDEDIHMNIEKALIDEVGPVGGK
LHTGRSRNDQVATDMHLWLRKRVVEFVGLLNKIQEALIGQAKANLDTIVPGYTHLQRA
QPILFAHHLMAYVSMFQRDIERLQDSYKRINVLPLGAGALAGTTFPIDRHFVAQQLGF
DRVYENSLDAVSDRDFIVEFLANASLIMTHLSRLSEEFVMWSSTEFRFIELDDAFCTG
SSIMPQKKNPDVPELVRGKTGRVYGNLIGLLTVLKSLPLAYNKDMQEDKEGMFDTVRT
LQGALQLYAPMIATMKVNKDRMRQAVNQDFSNATDIADYLVNKGMPFRQAHEVIGKTV
LYCIQNGKYLLDLKLEEYHQFSKLFDQDIFQVLQPESVVNARNVYGGTASVQVSGAIE
RAEAVHAAAAAWFDEYFAKSR"
misc_feature 129476..130810
/locus_tag="PM3016_123"
/note="argininosuccinate lyase; Provisional; Region:
PRK00855"
/db_xref="CDD:179143"
misc_feature 129542..130810
/locus_tag="PM3016_123"
/note="Argininosuccinate lyase (argininosuccinase, ASAL);
Region: Argininosuccinate_lyase; cd01359"
/db_xref="CDD:176463"
misc_feature order(129542..129544,129554..129556,129722..129724,
129728..129730,129797..129805,129812..129814,
129938..129943,130169..130171,130298..130300,
130304..130306,130328..130330,130334..130336,
130343..130345,130424..130426,130430..130432,
130439..130441,130445..130450)
/locus_tag="PM3016_123"
/note="active sites [active]"
/db_xref="CDD:176463"
misc_feature order(129767..129769,129776..129778,129785..129790,
129935..129958,129974..129976,129986..129991,
130007..130009,130016..130021,130028..130030,
130040..130042,130073..130087,130091..130093,
130100..130102,130142..130156,130163..130168,
130172..130174,130184..130186,130193..130195,
130205..130207,130214..130219,130223..130228,
130235..130240,130253..130258,130265..130267,
130289..130291,130307..130318,130322..130330,
130334..130336,130343..130348,130352..130369,
130373..130381,130388..130390,130394..130402,
130424..130435,130442..130444,130451..130453,
130484..130486,130493..130495,130574..130576,
130589..130591,130616..130621,130628..130630,
130637..130639,130775..130777,130781..130795)
/locus_tag="PM3016_123"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:176463"
gene complement(131040..132560)
/locus_tag="PM3016_124"
/db_xref="GeneID:11882087"
CDS complement(131040..132560)
/locus_tag="PM3016_124"
/codon_start=1
/transl_table=11
/product="VanW family protein"
/protein_id="YP_005310260.1"
/db_xref="GI:379718129"
/db_xref="GeneID:11882087"
/translation="MTSITTSKRLHYGLAAGLLLLLASSLGTAAYGLHPHLPAEARIG
DWSIAGLTPAELEEQLAAKEAALLSLPVRLAVKEGEARLTKSVTLGELGLELRREELQ
AQLQPLRQGSPWERALARWRLRGVSWQLAVQLPEEKLRAALSATFAEVYARKPADALR
IIEADDTIRYVPEQAVSLIDEAKLHEALLAKLPSWGSLAGAPLSKDAPESGAAPPPLD
VELPMRTAAPGVTVQALQAQGISRKLIEYTTSYPPGSASPEGRVHNVRSTAAVIHDVL
LKPGEVFDYAPYIAETEKRFGFREAPVIVNGKLVPGVGGGICQVSSTLYNAVLRAGLT
IVERRNHSLPVSYVPLGQDATFASGHIGFKFRNSTGHYLLIRTSATDRSMTVKLFGQT
PPEWSYDIVSKTVETLPAPVKYVHNPTLRKGRQETLIKGKPGYIVETYRRKLKNGVVM
AEEKISRDTYSAQPTVIASSNGSAASRDHTSPSPGASPREPMIEDGVKGPNYRSAR"
misc_feature complement(131391..131786)
/locus_tag="PM3016_124"
/note="VanW like protein; Region: VanW; pfam04294"
/db_xref="CDD:146762"
misc_feature complement(131157..131369)
/locus_tag="PM3016_124"
/note="G5 domain; Region: G5; pfam07501"
/db_xref="CDD:203655"
gene 133011..133696
/locus_tag="PM3016_125"
/note="FtsE"
/pseudo
/db_xref="GeneID:11882088"
gene 133686..134609
/locus_tag="PM3016_127"
/db_xref="GeneID:11882089"
CDS 133686..134609
/locus_tag="PM3016_127"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310261.1"
/db_xref="GI:379718130"
/db_xref="GeneID:11882089"
/translation="MRISTVARHLREGTKNVARNGWMSFASIASIAISLLILGVFLLL
TLNVNYLAQQIERQVEIRVYLEVNTSQEKIDEVAAKIKEIPQVKTVTFVSKEQGLADL
RERLGENGRQLLEGLEGEDDNPLNDSFTVEVTEPRDVASVAAAIEKLNAPEDPVKTIH
RVNYGKGTVETMFKVTSVVRNIGLVIVAGLALTAMFLIANTIKLTIIARRREISIMKL
VGATNAFIRWPFFIEGALLGLIGSLIPIVLLLYGYWQLMRWVSLDLNLMLIQLLPFEQ
VGPKTGALLLGIGVIIGVWGSTISVRKFMRV"
misc_feature 133686..134606
/locus_tag="PM3016_127"
/note="Cell division protein [Cell division and chromosome
partitioning]; Region: FtsX; COG2177"
/db_xref="CDD:32360"
misc_feature 133824..134465
/locus_tag="PM3016_127"
/note="FtsX-like permease family; Region: FtsX; cl15850"
/db_xref="CDD:210250"
gene 134708..135973
/locus_tag="PM3016_128"
/db_xref="GeneID:11882090"
CDS 134708..135973
/locus_tag="PM3016_128"
/codon_start=1
/transl_table=11
/product="peptidase M23"
/protein_id="YP_005310262.1"
/db_xref="GI:379718131"
/db_xref="GeneID:11882090"
/translation="MSNKPFVPFVVAAGLVGMLIAPQSGIAASETQRIQNELNQLRQQ
KNAYQKKQAETDKQIAQVQNEKARTESDLDALMGQIDSTNTKLNQLNEQIYTVKTSLE
QNAVELDEAEVRIETRDQLLKSRLRLMYMNGAVSYADVLLSSTSFSDFLDRLQALQSI
VSQDKDILEANKRDHKVIADKRVVIEQKLAEVKTLYGQVSEIKADLVEKEKEKEVRIA
SLSQQEEQLEHINEEIEQQVMAAAAAESKKQQALFKEQQRVAREAEAARKKNNTSNKG
VIAPPQAYAAPGGKFGYPLRSYVSKSSDFGSRRDPITGRTASHSGVDLPAPNGTDILA
AEDGVVIMAQSWSGYGNTVMIDHGGGIWTLYGHIRNGGIAVEKGETVKKGQKIAEVGS
TGRSTGNHLHFEVRINGNPVNPNGYIGQK"
misc_feature <134783..134971
/locus_tag="PM3016_128"
/note="Protein of unknown function (DUF2968); Region:
DUF2968; pfam11180"
/db_xref="CDD:151622"
misc_feature 134864..>135367
/locus_tag="PM3016_128"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3883"
/db_xref="CDD:33672"
misc_feature <135611..135970
/locus_tag="PM3016_128"
/note="Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane]; Region: NlpD;
COG0739"
/db_xref="CDD:31082"
misc_feature 135662..135949
/locus_tag="PM3016_128"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:201854"
gene 136068..137519
/locus_tag="PM3016_129"
/db_xref="GeneID:11882091"
CDS 136068..137519
/locus_tag="PM3016_129"
/codon_start=1
/transl_table=11
/product="Putative protease"
/protein_id="YP_005310263.1"
/db_xref="GI:379718132"
/db_xref="GeneID:11882091"
/translation="MTFKGRTVIAFVLLGMFASSIMTLTIVNPSIFAAVGRPGAEGAE
VKSGLTQKDYNKIATTYGLIENKFLTEVDREKIVNGAINGMLATLDDPFTVYMDQKEA
QQFDENISSSFQGIGAEVTSEDGRIMIVAPIKGSPAEKAGLHANDVILSVNGESLEGQ
TLNQAIMKIRGPKGTQAKIEIARPGSPEPIQIIVVRDDIDVETVYAEMLEGQIGKIEI
RQFASNTSKRFKEELKLLEDQGMKGLIIDVRNDPGGLLTAVVEIVEPFIPKDKAIVQI
ENRKGEKEVTPSKGSGKPYPVSVLINKGSASASEILAGALHDSVGSKLIGETTFGKGT
VQVTFEEEMGDGSNIKMTVYKWLTPNGTWIHKKGIAPDLAVEQPAFFKAAPLSKKETL
KPDTNSEDVKNLQIMLQGLALNPDRTDGYYSQQTATAVKAFQRLNDLPVTGEVDTETA
NKLEKAVLAAIREPKNDLQLKAALQYMQQTVKP"
misc_feature 136221..>136361
/locus_tag="PM3016_129"
/note="C-terminal processing peptidase family S41; Region:
Peptidase_S41; cl02526"
/db_xref="CDD:207630"
misc_feature 136263..137267
/locus_tag="PM3016_129"
/note="C-terminal peptidase (prc); Region: prc; TIGR00225"
/db_xref="CDD:161775"
misc_feature 136404..136631
/locus_tag="PM3016_129"
/note="PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function in
posttranslational protein processing, maturation, and
disassembly or degradation, in Bacteria, Archaea, and
plant chloroplasts. May be responsible for...; Region:
PDZ_CTP_protease; cd00988"
/db_xref="CDD:29045"
misc_feature order(136410..136421,136425..136427,136560..136565,
136572..136577)
/locus_tag="PM3016_129"
/note="protein binding site [polypeptide binding]; other
site"
/db_xref="CDD:29045"
misc_feature <136704..137195
/locus_tag="PM3016_129"
/note="C-terminal processing peptidase; serine protease
family S41; Region: Peptidase_S41_CPP; cd07560"
/db_xref="CDD:143476"
misc_feature order(136986..136988,137061..137063)
/locus_tag="PM3016_129"
/note="Catalytic dyad [active]"
/db_xref="CDD:143476"
misc_feature 137256..137426
/locus_tag="PM3016_129"
/note="Putative peptidoglycan binding domain; Region:
PG_binding_1; pfam01471"
/db_xref="CDD:201815"
gene 137704..138987
/locus_tag="PM3016_130"
/db_xref="GeneID:11882092"
CDS 137704..138987
/locus_tag="PM3016_130"
/codon_start=1
/transl_table=11
/product="Trypsin-like serine protease"
/protein_id="YP_005310264.1"
/db_xref="GI:379718133"
/db_xref="GeneID:11882092"
/translation="MGGLIDWGFRGLKALTELLLNPFYYVGILFIVLQYRRQILLERK
LFSVKLHSLISETWRTVLWGWIGGLAASAVMAGIGAVVQPEAVVLLWIVSLLLIWARV
RFLCWAYAIGVLGILQAVLVNFPALQEALSWRWAVDSVLALHMPSLFALVAVLHLIEA
LLVRRQGTRFGTPVFVESKRGKIVGGYQLQGFWPVALFLTVPVQGGAPLPWTPLLGGD
LYAGGWAVLALPVMIGFTDMTTSRLPREKVQLSSGLLVLYAALLLLLTALSAWWAPSL
LAVSLLCILLHEAIVFYSRWDESRRSPVFVHGNRGLKILGILPGSPAAELGLQVGESL
YKVNGMIVRTRQELHHALSQNAAFCRLEILNLAGESKFVKRAIFSGEHHLLGIILAPD
EDVLYYTKERPLPFWAYLGRRVRGLSDNRPRPKSM"
misc_feature 138634..138825
/locus_tag="PM3016_130"
/note="PDZ domain, also called DHR (Dlg homologous region)
or GLGF (after a conserved sequence motif). Many PDZ
domains bind C-terminal polypeptides, though binding to
internal (non-C-terminal) polypeptides and even to lipids
has been demonstrated; Region: PDZ; cl00117"
/db_xref="CDD:206846"
gene complement(139107..139862)
/locus_tag="PM3016_131"
/db_xref="GeneID:11882093"
CDS complement(139107..139862)
/locus_tag="PM3016_131"
/codon_start=1
/transl_table=11
/product="flagellar motor protein MotB"
/protein_id="YP_005310265.1"
/db_xref="GI:379718134"
/db_xref="GeneID:11882093"
/translation="MARRRKRENAPGGGHDRWLITYADLITLLLIFFVVMYSMSKVDL
DKYDEISDALRSEFNRSHSVLDGGDGITGGVNPPLGADDARLQLEREKRLYRERQFQQ
MVGQMQAYIEANNLQAQVNAATTTRGVTFTMNDLFLFDLGKAELKPEAKPVLEKLSSL
FAEIDATISIEGHTDDLPLATGSIYVDNWGLSGARSLSVLRYFLYDTQLDPQKFVSAS
YAHTRPVAENTSAENRAKNRRVEIVVLWEEPAS"
misc_feature complement(139686..139862)
/locus_tag="PM3016_131"
/note="Membrane MotB of proton-channel complex MotA/MotB;
Region: MotB_plug; pfam13677"
/db_xref="CDD:205853"
misc_feature complement(139128..139856)
/locus_tag="PM3016_131"
/note="flagellar motor protein MotS; Reviewed; Region:
PRK06925"
/db_xref="CDD:180754"
misc_feature complement(139131..139454)
/locus_tag="PM3016_131"
/note="Peptidoglycan binding domains similar to the
C-terminal domain of outer-membrane protein OmpA; Region:
OmpA_C-like; cd07185"
/db_xref="CDD:143586"
misc_feature complement(order(139149..139151,139161..139163,
139290..139292,139299..139304,139317..139319,
139338..139343,139437..139442))
/locus_tag="PM3016_131"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:143586"
gene complement(139846..140637)
/locus_tag="PM3016_132"
/db_xref="GeneID:11882094"
CDS complement(139846..140637)
/locus_tag="PM3016_132"
/codon_start=1
/transl_table=11
/product="protein MotA"
/protein_id="YP_005310266.1"
/db_xref="GI:379718135"
/db_xref="GeneID:11882094"
/translation="MDLTTIIGILAGLAALVGGYLWDGGDLSSLFVPSALLIVIGGTL
GAVAVSFPWSHLKGTLGALRMAFRIPLADPRRHIDEMMEMASVARREGVLSLEQRAQQ
HPDPFLREGLTLVVDGTDPSLTKQILELEMDALEQQYESRARVLESAGGYAPTMGIIG
TVMGLIHVLGNLSEPGNLAPAIAVAFTATLYGVATANLIYLPLANKIKVRGQEVIAEK
ELLLEGILALQAGENPYLIKKKMMTFLVKDQSGRTEEVEDDGTPA"
misc_feature complement(139864..140637)
/locus_tag="PM3016_132"
/note="Flagellar motor component [Cell motility and
secretion]; Region: MotA; COG1291"
/db_xref="CDD:31482"
misc_feature complement(139900..140568)
/locus_tag="PM3016_132"
/note="MotA/TolQ/ExbB proton channel family; Region:
MotA_ExbB; cl00568"
/db_xref="CDD:212236"
gene 140994..142991
/locus_tag="PM3016_133"
/db_xref="GeneID:11882095"
CDS 140994..142991
/locus_tag="PM3016_133"
/codon_start=1
/transl_table=11
/product="UvrB protein"
/protein_id="YP_005310267.1"
/db_xref="GI:379718136"
/db_xref="GeneID:11882095"
/translation="MHNEVVVSDKKFQLVSDFTPQGDQPAAIEKLVEGFEAGERYQTL
LGATGTGKTFTAAHVIAKLNRPTLLMAHNKTLAAQLCSELKEFFPHNAVEYFVSYYDY
YQPEAYIPSSDTFIEKDSSINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPME
YRNMVMSLRVGMERSRNDILHRLIDIQYQRNDMNFVRGTFRVRGDVVEIFPASHGEHA
VRVELFGDEIERITEIDVLTGEILGERDHIAIFPASHFVTGEETMKRALVNIERELEE
RLEELRGQGKLLEAQRLEQRTRYDIEMMQEMGFCSGIENYSGPLTFRERGATPYTLLD
YFPDDFICMIDESHVTLPQVRAMYNGDRARKEVLVDHGFRLPSAMDNRPLRFEEFEKK
VGQQLYISATPGPYELEKCPEMVQQIIRPTGLLDPIIEVRPTKGQIDDLLGEINDRIR
KDERVLVTTLTKKMAEDLTDYLKEIGIKVRYLHSDIKTLERMQILRELRLGVFHVLVG
INLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARNAEGRVIMYGDKITDS
MDKAIKETERRRTIQMAYNEKHGITPQTIQKKVRDVIEATKVAEQKTEYLADVKTKMS
KKDRMSLIERMEQEMKEAAKNLQFERAAELRDAVLELKAEL"
misc_feature 141015..142988
/locus_tag="PM3016_133"
/note="excinuclease ABC subunit B; Provisional; Region:
PRK05298"
/db_xref="CDD:180000"
misc_feature 141165..>141311
/locus_tag="PM3016_133"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 142284..142670
/locus_tag="PM3016_133"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature order(142371..142382,142440..142445,142518..142526)
/locus_tag="PM3016_133"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature order(142542..142544,142620..142622,142632..142634,
142641..142643)
/locus_tag="PM3016_133"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
misc_feature 142665..142796
/locus_tag="PM3016_133"
/note="Ultra-violet resistance protein B; Region: UvrB;
pfam12344"
/db_xref="CDD:204889"
misc_feature 142881..142985
/locus_tag="PM3016_133"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
gene 143014..145897
/locus_tag="PM3016_134"
/note="UvrA"
/pseudo
/db_xref="GeneID:11882096"
gene complement(146101..146715)
/locus_tag="PM3016_137"
/db_xref="GeneID:11882097"
CDS complement(146101..146715)
/locus_tag="PM3016_137"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_005310268.1"
/db_xref="GI:379718137"
/db_xref="GeneID:11882097"
/translation="MTIYSTRKRVSPLTRNRIRAAALHEFAYKGYEGTPLSDIAKEVG
IKTPSFYAHFRSKESLLLHLFDDVLQERVETVCRLIRQLEASTPDEMLFRILVLFCHG
EDVSEEKLLFLKRLTLFPPPALEQEIKARFLASERLLSEPLCRIFREAADLGAIRPIP
ADELLASYYCLVDGCFVQRFYYPPHEAEHRLRLAWSIFWNGIRA"
misc_feature complement(146104..146703)
/locus_tag="PM3016_137"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature complement(146524..146664)
/locus_tag="PM3016_137"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(146715..146882)
/locus_tag="PM3016_138"
/db_xref="GeneID:11882098"
CDS complement(146715..146882)
/locus_tag="PM3016_138"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310269.1"
/db_xref="GI:379718138"
/db_xref="GeneID:11882098"
/translation="MYPVSSAPCFVLSNDRTAAQTSLRTRSYRLPRLSRLMTQLRRQL
RRQRPLSRSLA"
gene 147235..148137
/locus_tag="PM3016_139"
/db_xref="GeneID:11882099"
CDS 147235..148137
/locus_tag="PM3016_139"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_005310270.1"
/db_xref="GI:379718139"
/db_xref="GeneID:11882099"
/translation="MDTPMLPLQGKVAVVAGATRGAGRAIAVSLGEAGAIVYCTGRSV
RGRLSPIGRQETIDETAELVTARGGRGIPVRVDHTVEDEVRGLFARVQEEQDGRLDIQ
VNDIWGGEHLTAWGKPFWESSLEDGLLMQRQAVHSHMITSYYGAPLMTARGQGLIIEV
TDGFDYRYRGNLYYSLAKISAIHLAEAMAAELKSTGVTALSVTPGFLRSEQMLDHFGV
SEENWRDAIAQEPHYAESETPYLLGRGIAALAADPKVADKAGRILTSWDLSEEYGYSD
IDGRRPHWGRYAAKHRLYDNPLTP"
misc_feature 147322..148095
/locus_tag="PM3016_139"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
misc_feature 147322..148026
/locus_tag="PM3016_139"
/note="Dehydrogenases with different specificities
(related to short-chain alcohol dehydrogenases) [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only]; Region: FabG; COG1028"
/db_xref="CDD:31231"
misc_feature order(147355..147363,147547..147555,147712..147720,
147754..147756,147766..147768,147844..147855)
/locus_tag="PM3016_139"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:187535"
misc_feature order(147634..147636,147718..147720,147754..147756,
147766..147768)
/locus_tag="PM3016_139"
/note="active site"
/db_xref="CDD:187535"
gene 148524..148742
/locus_tag="PM3016_140"
/db_xref="GeneID:11882100"
CDS 148524..148742
/locus_tag="PM3016_140"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310271.1"
/db_xref="GI:379718140"
/db_xref="GeneID:11882100"
/translation="MFMAAEAGAATASSFTGFDPFVILFTLVIAIGVIRLIGAKKKNP
FAIGFGLVSLAVFGLMTVVMVMGWMGQL"
gene 148934..150136
/locus_tag="PM3016_141"
/db_xref="GeneID:11882101"
CDS 148934..150136
/locus_tag="PM3016_141"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310272.1"
/db_xref="GI:379718141"
/db_xref="GeneID:11882101"
/translation="MIRRFGLGLFAGLTAAVLLLPSAADAGVVPATVFTIIGETEVYT
KEGGGGRPMGRIAPYQSVTLAPDGPFDWYDERPQDPWLKVSTWLGSQWIRDDDRVLYG
EFKEQTQTLTLIGTTRLFSRPDYGAATGESLAPQQVVSTASIGYAPKYITNTLSAMAQ
SGTWYRIETSWRGPVWIANPALMEEVKAEVVDYDVLLTGQESAYPLPYAEGEGDKLEA
GIVRASARWEDRAIPFAAKLWYKVKLPQGERWIQPEHESLENYRGEQKPIELKTKTRY
FEEPNLTYDRTRWLEPGTYPVVESFGDWMRIETPDGAKWIYPKRVLMERPEGILPVQE
TIRISGRTQTYYFPHNAEPCHTEGFFAPQEVQAFEKWTSPEGVVWYHITTFSGEEWVP
EEPLGQTG"
gene complement(150219..151187)
/locus_tag="PM3016_142"
/db_xref="GeneID:11882102"
CDS complement(150219..151187)
/locus_tag="PM3016_142"
/codon_start=1
/transl_table=11
/product="xylose isomerase domain-containing protein"
/protein_id="YP_005310273.1"
/db_xref="GI:379718142"
/db_xref="GeneID:11882102"
/translation="MKLGVFTVLFQQKPLEEALDYIAAQGLQAVEIGTGAYPGNAHCN
PDVLLADESKLKAFKHAVESRGLTISALSCHANPLHPQKAIAQEAHDTIIKTVDLAQK
LEVPVVNTFSGCPGDSDDAKYPNWPVAPWPPDFQEILDWQWANKVIPYWTETGKYASD
RSVKFGLELHGGFSVHTPATLLRLREAAGDVIGANLDPSHMWWQGIDPVQAIQILGRA
GAIHHFHAKDTSIDPINVNRYGLTDMQSYSNMLDRAWQFRTVGYGHDIKVWADIISAL
RLVGYDYVVSIEHEDGLMSVEEGFTKAVQNLQQVLIKEPLGEMWWV"
misc_feature complement(150249..151187)
/locus_tag="PM3016_142"
/note="Sugar phosphate isomerases/epimerases [Carbohydrate
transport and metabolism]; Region: IolE; COG1082"
/db_xref="CDD:31279"
misc_feature complement(150222..150383)
/locus_tag="PM3016_142"
/note="AP endonuclease family 2 C terminus; Region:
AP_endonuc_2_N; pfam07582"
/db_xref="CDD:191792"
gene 151450..151740
/locus_tag="PM3016_143"
/db_xref="GeneID:11882103"
CDS 151450..151740
/locus_tag="PM3016_143"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310274.1"
/db_xref="GI:379718143"
/db_xref="GeneID:11882103"
/translation="MRKDTQIVETAVGTWLRFPGSFKKHQCLVELSDQLSLDINLKSG
LVHVHQKDGNDVFQHVGDLCLAPVGGQLQLSFVSTQPQDPRKELPLAQPDAS"
gene complement(152000..153151)
/locus_tag="PM3016_144"
/db_xref="GeneID:11882104"
CDS complement(152000..153151)
/locus_tag="PM3016_144"
/codon_start=1
/transl_table=11
/product="membrane bound O-acyl transferase MBOAT family
protein"
/protein_id="YP_005310275.1"
/db_xref="GI:379718144"
/db_xref="GeneID:11882104"
/translation="MFYLNMNAVLAMLGMVIVLALTRKWRGNKRLLLLAFNLSFLVVF
SSKLFFFYLGYTALNYLAFRFLSVVTRARLAWFIGLIALNIGLVSSLRLFDMKIFTGT
WYDAALVIGLIYNVLKVIDALYFAYFFKQDAKAHVLDYFNYILFLPTFTSGPILKFRD
FMADAKQPYQVDAAQAEVNIKRIILGLFKRVVLVTWASTLFDYVSEGELQTHESLFLM
IVFYAWIYFDFSGYSDIAVGFGRLMGYNVPENFKKPFSSPTLTQYWRNWHATLGDWFR
DHIFIFFSRQTPTKWTAAGLSVLIMVLIGLWHGFSWLYLLWGIYHGLFIALENLLGRT
TVNKRKVSKTHFYARCALTQLIVTLAIIVYSPNEEAVLRIYRGLLNLPW"
misc_feature complement(152171..>152746)
/locus_tag="PM3016_144"
/note="MBOAT, membrane-bound O-acyltransferase family;
Region: MBOAT; cl00738"
/db_xref="CDD:207183"
gene complement(153246..153356)
/locus_tag="PM3016_145"
/db_xref="GeneID:11882105"
CDS complement(153246..153356)
/locus_tag="PM3016_145"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310276.1"
/db_xref="GI:379718145"
/db_xref="GeneID:11882105"
/translation="MAGIARKILEVIVYLAMLILVIVYFTGEGVFIYEDF"
gene complement(153323..154243)
/locus_tag="PM3016_146"
/db_xref="GeneID:11882106"
CDS complement(153323..154243)
/locus_tag="PM3016_146"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310277.1"
/db_xref="GI:379718146"
/db_xref="GeneID:11882106"
/translation="MMAILRKNSFVLLLLAAFVLTDVAVSLWDPMVTSRRFYKNDFTK
TLYHHDWTAHGPVFYGNSAVTGAYIEPDAKKSPLIEMGLSYGKLTDLKAILEQERFQV
EEQLVIGIDVHTMIDSLETDPTYQWFKKPYQPYLYAYRDYFRDSGTEFVRQLYMGAVE
LDPTKLLAYQPRWIDKELYFGHKTEEELRKKWADYDKRFGWMGEPDYRENLAALDWLL
AYAKERSLPLRVVWMPWNRGYELPRYMPGLQQAVNARLQAAGVPVLDKLQGYDPRLFH
DLVHLSRQEGAPVFTKEVDAWLASLAKSSK"
gene complement(154452..155648)
/locus_tag="PM3016_147"
/db_xref="GeneID:11882107"
CDS complement(154452..155648)
/locus_tag="PM3016_147"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310278.1"
/db_xref="GI:379718147"
/db_xref="GeneID:11882107"
/translation="MECVVSLEGLASSQHGQLKYASAFIDETISDIRLEGGSIHIVHN
SPKGNEGIEERVRKLIDRFSQGDFGFKENILFEHQVATPYEGDIIAELTERKIIKVLE
PGLFIFREPFSSLMRFFDYSFVSKIAGRFTGVTEEQYPAVIHSTTLNKTNHFTSFPEH
IHFLTHLREDLDIIEAFSQSIREAGGWKEDMELDLNANMPLPKFTMNPSTCYHCYEGL
QNETLESDGLIVTAISKCHRFESRNHTDFGRLLDFSMREIIFVGKPEFVKEHRLQAIE
YLKELAVEWNVDSLLEIANDPFFTNDFQVKASFQRNQEMKYELRLTIPSVGKSIACSS
VNFHSNTFGNAFNIKVGKRPAVTGCVGFGIERWAFAFLAQYGLDEAQWPAAFREQYHA
WQAKAL"
misc_feature complement(155235..155249)
/locus_tag="PM3016_147"
/note="motif 1; other site"
/db_xref="CDD:29813"
misc_feature complement(order(154812..154814,154932..154934,
154938..154940,154998..155003,155235..155237,
155241..155246))
/locus_tag="PM3016_147"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29813"
misc_feature complement(154485..>155234)
/locus_tag="PM3016_147"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature complement(order(154551..154553,154560..154562,
154566..154571,154647..154649,154659..154664,
154872..154880,154884..154886,154890..154892,
154935..154937,155016..155018,155022..155024))
/locus_tag="PM3016_147"
/note="active site"
/db_xref="CDD:29813"
misc_feature complement(154932..154940)
/locus_tag="PM3016_147"
/note="motif 2; other site"
/db_xref="CDD:29813"
misc_feature complement(154551..154553)
/locus_tag="PM3016_147"
/note="motif 3; other site"
/db_xref="CDD:29813"
gene complement(155656..155907)
/locus_tag="PM3016_148"
/db_xref="GeneID:11882108"
CDS complement(155656..155907)
/locus_tag="PM3016_148"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310279.1"
/db_xref="GI:379718148"
/db_xref="GeneID:11882108"
/translation="MQDLLQELESHIRTRYEIEEDDDDFTVDVHLFDYGYIDSIGATA
LIAHIEKTYGIAVTNQDLMLYPMNTVREIATFIHTKKGA"
misc_feature complement(155677..155859)
/locus_tag="PM3016_148"
/note="Phosphopantetheine attachment site; Region:
PP-binding; pfam00550"
/db_xref="CDD:201300"
gene complement(156017..159325)
/locus_tag="PM3016_149"
/db_xref="GeneID:11882109"
CDS complement(156017..159325)
/locus_tag="PM3016_149"
/codon_start=1
/transl_table=11
/product="FG-GAP repeat-containing protein"
/protein_id="YP_005310280.1"
/db_xref="GI:379718149"
/db_xref="GeneID:11882109"
/translation="MSEELSPAWYGGLELSLLRHRKALAAVLLLVAAGLTALLWTAEK
ELTVRMLYATQGDRYDTAAYSQLRQSPAAGLKLERRSLEGLGARQLRSYDTIVLDPNL
DGHLTGEQRKLLADYAAGGGHLFLENAFADDFPLEVLGAAALTPVKAPPKEKLQAAAL
SPPDKDTGLLAYPAVGLNEQGIQQLLRLFTETYLRHDTAGTLSGFSWGQGIVPGTAQP
LVTLDGTALFTLNRYGEGTVFFCGALLPSRYYPTGYDLVSGMDGTLGFDRLAAERNAS
LQPVTGAKYFNRLALKTEPSFNFSFAAGSALLRSEYAAFVSKEKLGYSVEKTYGPYGR
PAMAHQNHFEALEAIRDGEGIQWTELLKKYNQIPSFSLVRSAFTWQRWQESVVVHLNT
GTNDKPAFAGETPNSFYSSGTRLIGADGAVRGAYYPGSPSLGDPITLPYRAAPALADV
TGDGRADLIVGSADGTLSAYPNLGADDAAYAGQQLPAGLAAPPRFGARMPLRLAGGEP
LAVGEYASAAAYDLNADGRADLVIGRPDGTLAAAYGEAGGTFTAPAALTAGGAVLRGA
APLAAAVGDVTGDAVPDLLVGDGAGAVTLYRGERQPAGTGALSFGRGEPAVRTGQPFA
APSLHDMNGDGRLDLVVGGLEGDLRVYLQTGSSNADPAWAENGAIEAATLNQVGGREL
VGGHNAVPLWADLNGDGLDDLIAGQLEFGMPKPIDDPGFPYAGQLKEFIDYSRANALE
LYPHIYVHNYTSDEQERQEIELHRQAFAKLGIPWEHTGTNQHTWRINNPDRVQTLDNE
RDAGIWFNFGFKPSYAEHDPRLGPEYSWGLPFLMSDPSGEPLLTKPMMLYTPAPVLRK
GAYATTDLFDAYAALDLPVDYFEHIEYHFPLRVGELTEFVTYLDGLRNLYGYNFMTET
QMARSFLNAMTTEVELYRPWREVLLDRARRLLGQETEPRFRVRADASAVPQQAAEYRG
TLGLAVERGQAYAARDAVTDAEVRDTRGGKLYLGVPDQAEIRFAPPGTTAAEDTAAFH
LLRVNVPYTLETRDESRILRFGADGMQQVQLYSPVKPVFEGTDLRIEGDEARGIYTIT
HFGEAGTVTIRSPK"
misc_feature complement(157916..157999)
/locus_tag="PM3016_149"
/note="FG-GAP repeat; Region: FG-GAP; pfam01839"
/db_xref="CDD:202003"
misc_feature complement(157730..157981)
/locus_tag="PM3016_149"
/note="Family description; Region: VCBS; pfam13517"
/db_xref="CDD:205695"
gene 159534..162053
/locus_tag="PM3016_150"
/db_xref="GeneID:11882110"
CDS 159534..162053
/locus_tag="PM3016_150"
/codon_start=1
/transl_table=11
/product="peptidase U32"
/protein_id="YP_005310281.1"
/db_xref="GI:379718150"
/db_xref="GeneID:11882110"
/translation="MRDIRKSDIELLAPAGDWDCLRAAVANGADAVFFGVEKFNARAR
AHNFHTDELPDIISFLHRYGVKGFLTFNILVFEEELESAKELIEACIDAGVDAVIVQD
LGLVKMIRELSPDFPIHGSTQMTITSPEAVEFTKPFDIERVVLGRENNLKQIKTIGDQ
AKLPMEVFVHGALCVSYSGQCLTSEMWGGRSANRGECAQACRLPYDLMVDGEHKPMGD
IAYLLSPKDLAALELVPELIEAGVTSFKIEGRLKSPEYVANVVSKYRKAIDRYFDGEN
PRPTKEELRELEQSFSRGFTHGFLEGTNNKQLVEGTYPKSRGVYLGRVKQILRDGVVC
ELEAPLKRGDGIVFDAGDPTKKEEGGRVYDLRRKGVKFEGEAPGGEIEIIPGRNDVAL
ARLHVGDRIWKTNDPHLDKRLRQTFETDKPYRTFPVHVRVTGAAGQPLKSVWTDTILG
NTVTVESELPLAVAEKRPMTAELFEEQFGRLGGTVFELAGVDVQLAGDLIVPMRELNS
MRREAAERLLELREKPPAYIKRSVGAYDDAPLTPPVSALPSGGKAQARLTVLCRSLEQ
VVEACRSDIDMVYADFEFIKQFPAAVEAAHAAGKRIALATPRIHMPGETGYFKNILNL
GPDAVLVRNTGAVYWFLRYFAEHPSEKRPMLIGDFSLNVANHKAVSLFREAGLDRVTP
SYDLNVQQMVDLLRRSDTSTLEVVIHQHLPMFHTEHCVYCTFMSPGTNYTNCGRPCEE
QRASLRDRVGFSHPVRVDEGCRNTVYNAIDQSGAEYLKDFMELGVSTFRVEFLEESAE
KVREVLGLYGRALRGEISGTQVWKTLKSTNQLGVTRGQLVK"
misc_feature 159558..160571
/locus_tag="PM3016_150"
/note="Collagenase and related proteases
[Posttranslational modification, protein turnover,
chaperones]; Region: COG0826"
/db_xref="CDD:31168"
misc_feature 159801..160451
/locus_tag="PM3016_150"
/note="Peptidase family U32; Region: Peptidase_U32;
pfam01136"
/db_xref="CDD:201619"
misc_feature 160734..161060
/locus_tag="PM3016_150"
/note="Collagenase; Region: DUF3656; pfam12392"
/db_xref="CDD:204900"
misc_feature 161364..161993
/locus_tag="PM3016_150"
/note="Peptidase family U32; Region: Peptidase_U32;
pfam01136"
/db_xref="CDD:201619"
gene 162319..162669
/locus_tag="PM3016_151"
/db_xref="GeneID:11882111"
CDS 162319..162669
/locus_tag="PM3016_151"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310282.1"
/db_xref="GI:379718151"
/db_xref="GeneID:11882111"
/translation="MLVFGVYLLVLGLLLFLLPGPLRELLGIEEVPKVWLRFIGELLA
FLGGYYVLAARKGWYEFFRLSVWLRALVFISVTGFVLGKAMPVVFVPLGLIDLAGAAW
TGWAMKREPREQKH"
gene 162929..164014
/locus_tag="PM3016_152"
/db_xref="GeneID:11882112"
CDS 162929..164014
/locus_tag="PM3016_152"
/codon_start=1
/transl_table=11
/product="multidrug ABC transporter ATPase"
/protein_id="YP_005310283.1"
/db_xref="GI:379718152"
/db_xref="GeneID:11882112"
/translation="MLEVKGVSKLYENQRGVRNIDFSMNRGEIVGFLGPNGAGKTTTM
RMITGYLNPTHGSITIDGLSMAEHSKKARQKIGYLPETPPLYPEMTVSAYLQFIADLR
DIPARDQKRRIGEVIERLGLQGRERQIIRSLSKGYKQRIGLAQAILHNPDLLVLDEPT
SGLDPKQIIEIRQLIRELGENHTVLLSTHILPEINTLCNRVLIINGGQIVLDGQPDQL
ANSMGETFEVSLEVRGPREAVLAELASVPGVGSVRELGAEGAQTASAALPEVEAAELP
AADLAGQPADAAAAPASVKVIVTSSDREDIREALFYRLAEKRYPILTMKRESLSLEEI
FLKLTTSESLESAAAAETNEGEVKEHA"
misc_feature 162932..163933
/locus_tag="PM3016_152"
/note="gliding motility-associated ABC transporter
ATP-binding subunit GldA; Region: GldA_ABC_ATP; TIGR03522"
/db_xref="CDD:132561"
misc_feature 162932..163567
/locus_tag="PM3016_152"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 163028..163051
/locus_tag="PM3016_152"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(163037..163042,163046..163054,163169..163171,
163397..163402,163493..163495)
/locus_tag="PM3016_152"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 163160..163171
/locus_tag="PM3016_152"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 163325..163354
/locus_tag="PM3016_152"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 163385..163402
/locus_tag="PM3016_152"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 163409..163420
/locus_tag="PM3016_152"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 163481..163501
/locus_tag="PM3016_152"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 164016..164720
/locus_tag="PM3016_153"
/db_xref="GeneID:11882113"
CDS 164016..164720
/locus_tag="PM3016_153"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_005310284.1"
/db_xref="GI:379718153"
/db_xref="GeneID:11882113"
/translation="MMAMTKKELQHYFYSPIAYAAFAFFFLIAGYFFSANFLYPPYYV
DVRPIFGSTTFVFLFIIPLLTMRLVSDELRQGTDELLLTSPVSLTEIVLGKYLAAVVV
QLLLVVGSLIYPLILSAFGELDQPVLWMSYLAMFLMGAAMMAVGLFASSLSAHQMVSG
IIGFAILLVFWTIEWLGDTVGGRIKDYLGLFSIVGRTSDLQKGVLDFADVLFYVTLIA
VFLLLSIQVLERKRWR"
misc_feature 164142..164708
/locus_tag="PM3016_153"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:213123"
gene 164736..166130
/locus_tag="PM3016_154"
/db_xref="GeneID:11882114"
CDS 164736..166130
/locus_tag="PM3016_154"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310285.1"
/db_xref="GI:379718154"
/db_xref="GeneID:11882114"
/translation="MNKWIRGTNATVLSLAVIGIFIVLTIFLNSVKNLQVDFTKDNKF
TLADQTLQTLKALDQDVRIIAFTSDQTEPIISRQVSDLVQEYKRQNGKITFDEYDLVK
NPAVAKNYEVDPAGTLVVESGTQKKTLYYYDMFIPGQQQGEVYKFSGEEKLTQALANL
NSKEKRKVYFLSGHNEMPLSQMNLWRSGLEGENYEVNELNLLREGKIPDDAEVLFIIG
PENDLSDKEAELVKTYLSGKGKLYLALGFNKDMASGWKSLDSIMAQYGIKDQHAVAIE
PKQSMLYDPLTIIPEYGSHEITSKLQQYNLLTMMTLAVSLGSDQPVADFPATPILKTT
DKAYGETDLQTLANSSRSANDANDVKGPLNLGYVVEDKDKKPKAVVLGGSTFFQDSII
QQQGNRDFALNSVGWLQEQKDQVTIRPREGDAPQTAALTQSQGSTIFYGTVLLYPLFF
LIIGGLIWWRRRLG"
misc_feature 164838..165539
/locus_tag="PM3016_154"
/note="ABC-type uncharacterized transport system; Region:
ABC_transp_aux; pfam09822"
/db_xref="CDD:204320"
gene 166127..167125
/locus_tag="PM3016_155"
/db_xref="GeneID:11882115"
CDS 166127..167125
/locus_tag="PM3016_155"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310286.1"
/db_xref="GI:379718155"
/db_xref="GeneID:11882115"
/translation="MKRLIPTLVLVLLCIGGFWYASSKDFFKEKPPETPALVTVSKQD
VTGYTIKNGDTVVEMAQKDGKWTMTKPSALPLNDYEPGAWVDSFTNAKKEKTVDANPS
DLAQFGLAQPNQEFTVTLKDGTKHTLSVGDPVAVQGFYYAKFGSSPEVFQLAEMHVTS
LAKQPLDFMEKSPVKLNYEAVRSIAVDYKGGKWTLTKAETDKKSYEANWKLGDQEVKG
ADASAYLDKVSFLTTDQPAKASAEVKGLDQPDLRLEVKEADAEGKETAALYTGKLDGA
NVWIAKQGDAWAFSVPAASVQELADLPKTKAAEGAAAGDAAAPAPAAPQDAAKEQK"
misc_feature 166319..166873
/locus_tag="PM3016_155"
/note="Domain of unknown function (DUF4340); Region:
DUF4340; pfam14238"
/db_xref="CDD:206406"
gene 167433..168134
/locus_tag="PM3016_156"
/db_xref="GeneID:11882116"
CDS 167433..168134
/locus_tag="PM3016_156"
/codon_start=1
/transl_table=11
/product="LmbE family protein"
/protein_id="YP_005310287.1"
/db_xref="GI:379718156"
/db_xref="GeneID:11882116"
/translation="MKEAVIGFVLAHPDDETFGSAVLARELADAGHRVVLLSATKGDA
GQSGPLGPMSRGELAEVRVKELAEAAEILGIREVEHLGYPDGKLGDVPAEELSARITD
FLNRHGVEIVVTFPEDGGNRHPDHIAISRGARDAVFGGGSTSVRKLYYFLFGPAAEGR
RITFRLDSRAGWDVKRRALLAHRSQRTVIEKYFGDLETTFPEELKYESFALAWTKEGD
PAREEASLADFLAGG"
misc_feature 167454..167807
/locus_tag="PM3016_156"
/note="GlcNAc-PI de-N-acetylase; Region: PIG-L; pfam02585"
/db_xref="CDD:202295"
gene 168302..168922
/locus_tag="PM3016_157"
/db_xref="GeneID:11882117"
CDS 168302..168922
/locus_tag="PM3016_157"
/codon_start=1
/transl_table=11
/product="phosphoglycolate phosphatase"
/protein_id="YP_005310288.1"
/db_xref="GI:379718157"
/db_xref="GeneID:11882117"
/translation="MKKTVIFDFDGTLVASRDLAVRLFNELSGTYGYRRIQEEEIPAL
AALSVPDRLRAIGCPMYKLPSLLFEIKRRYKQAVTELEPVDGMPEVMRELRSRGIRTG
ILSSNRPDNIRAFLGRGGWDEPDFLFTATNLFGKDRAIRSLLRAERLQPEEALYVGDE
LRDIEACRRVSLPVAAVTWGYDAEDLLRGAAPDHVLGRPRELLELV"
misc_feature 168302..168919
/locus_tag="PM3016_157"
/note="Predicted phosphatases [General function prediction
only]; Region: Gph; COG0546"
/db_xref="CDD:30892"
misc_feature 168521..168832
/locus_tag="PM3016_157"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 168614..168616
/locus_tag="PM3016_157"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(168978..169313)
/locus_tag="PM3016_158"
/db_xref="GeneID:11882118"
CDS complement(168978..169313)
/locus_tag="PM3016_158"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310289.1"
/db_xref="GI:379718158"
/db_xref="GeneID:11882118"
/translation="MTDDVMYRRSNLKRIPDVQKLVPAAAGAYFRFEKEAFAEGAVPS
RTKELIAIAAAHITGCPYCIDVHVSKFKALGGTVEEVMEAAVVAGAVKAGAALAHSTH
AIRAYEELP"
misc_feature complement(<169110..169247)
/locus_tag="PM3016_158"
/note="Carboxymuconolactone decarboxylase family; Region:
CMD; pfam02627"
/db_xref="CDD:202318"
gene complement(169583..170008)
/locus_tag="PM3016_159"
/db_xref="GeneID:11882119"
CDS complement(169583..170008)
/locus_tag="PM3016_159"
/codon_start=1
/transl_table=11
/product="transcriptional regulator TrmB"
/protein_id="YP_005310290.1"
/db_xref="GI:379718159"
/db_xref="GeneID:11882119"
/translation="MEPSMNNLLGYWLKITYRHICNYLDEQLAPFGITNAQLGVLLLL
WEKEGLTQKDLQEGLGIRAASLSHLMKGLEAKGLIRRQADERDTRVNRVYPTDASREL
QEACLRITAEGERRLTEHLTAAEKEQLLGQMKQMSDNLK"
misc_feature complement(169631..169933)
/locus_tag="PM3016_159"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature complement(169739..169912)
/locus_tag="PM3016_159"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
gene 170214..170456
/locus_tag="PM3016_160"
/db_xref="GeneID:11882120"
CDS 170214..170456
/locus_tag="PM3016_160"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310291.1"
/db_xref="GI:379718160"
/db_xref="GeneID:11882120"
/translation="MYNQQQQQQTLSGNTVTAKELAYISDSLSNEELLAKLAVQGVME
SQTPQLKQKLAQIAQERLQNTDLLLRTLQQHTQMTH"
gene 170481..171524
/locus_tag="PM3016_161"
/db_xref="GeneID:11882121"
CDS 170481..171524
/locus_tag="PM3016_161"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310292.1"
/db_xref="GI:379718161"
/db_xref="GeneID:11882121"
/translation="MYQTNYNAPQGQQASEQRHLHLDEQDVAKLVLSELKRTAREYTT
AALEATHPAIRQTFMSLTQKTLQDQAELFTVLSQINGYGNIRMASQQDVQQELQNQFR
RAEQLQSTVQGAVQNAYSSSAGLYQQQSQQQAQMQSYQQQNQAFQQQQQPSPQAYQTS
YNVGGANIIAPSSQGGQSSYGTGSQGSSYSQPSSPAQSPSPGQGYSSSYNQPLLQGQS
YASSYSPSFGSAQQENEYSLKSSVAGTDAGEYYTAKHAVQEYNSGRYGSSASESYGSS
SQAGETGSSQGYTSSGQGSSASRQIGGYSMSGASASESSGSAGKMGSSSAAASRHQQS
GGQGSHQGTKYMM"
misc_feature 170547..170726
/locus_tag="PM3016_161"
/note="Coat F domain; Region: Coat_F; pfam07875"
/db_xref="CDD:203788"
gene complement(171723..172040)
/locus_tag="PM3016_162"
/db_xref="GeneID:11882122"
CDS complement(171723..172040)
/locus_tag="PM3016_162"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310293.1"
/db_xref="GI:379718162"
/db_xref="GeneID:11882122"
/translation="MSKKKNPKPTLGRCELCLREDVETTEHHLTPKERGGTFLGTADL
CIPCHKQIHALFTNEELAAGLNTLESLRANETVAGFLRWIRKQPPTALPRVRKSQHVR
GKR"
misc_feature complement(171879..172001)
/locus_tag="PM3016_162"
/note="HNH nucleases; HNH endonuclease signature which is
found in viral, prokaryotic, and eukaryotic proteins. The
alignment includes members of the large group of homing
endonucleases, yeast intron 1 protein, MutS, as well as
bacterial colicins, pyocins, and...; Region: HNHc;
cl00083"
/db_xref="CDD:213079"
gene 172232..172831
/locus_tag="PM3016_163"
/db_xref="GeneID:11882123"
CDS 172232..172831
/locus_tag="PM3016_163"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310294.1"
/db_xref="GI:379718163"
/db_xref="GeneID:11882123"
/translation="MKRLLMLGMLAALVAGCQTTGDGSNDANMKTLQKTVGRERLLQT
FSQVTPPPTGKEVLSGTDEQVITWIRQVDDWTHKVLSSPVTGEMDEYAMREMRKHLTQ
VYTPQMSQQLIDYFYRHDPTVGTYQANSTKAMLELRSEWDRYELRKEQPAKNQYKLTL
TGRRRGDGAESVMNHSSAYQIQGDRLVITDFRTESGSPR"
gene 173212..173922
/locus_tag="PM3016_164"
/db_xref="GeneID:11882124"
CDS 173212..173922
/locus_tag="PM3016_164"
/codon_start=1
/transl_table=11
/product="protein PcrB"
/protein_id="YP_005310295.1"
/db_xref="GI:379718164"
/db_xref="GeneID:11882124"
/translation="MHLDLKTWKHVFKLDPDRELGDEELERVCLSGTDAILVGGSTGV
TFDNTVDLLARVRRYEVPCVLEVSEQEAIVPGFDLYFIPVVLNSRDPQWITGRQHAAL
KEYGAIMDWSQIVTEGYIMLNGESSAARITSSETELSGRDVEAYARLAERLFRCPVVY
MEYSGIFGDMALVKKVSGLLGESRLFYGGGIDGPDKARQAAEAAHTVVVGNSIYYDLE
SALQTVQAVREAGGAAGR"
misc_feature 173221..173895
/locus_tag="PM3016_164"
/note="PcrB family; Region: PcrB; pfam01884"
/db_xref="CDD:202027"
misc_feature 173236..173886
/locus_tag="PM3016_164"
/note="PcrB_like proteins. One member of this family, a
protein from Archaeoglobus fulgidus, has been
characterized as a (S)-3-O-geranylgeranylglyceryl
phosphate synthase (AfGGGPS). AfGGGPS catalyzes the
formation of an ether linkage between...; Region:
PcrB_like; cd02812"
/db_xref="CDD:73374"
misc_feature order(173248..173250,173689..173691,173695..173697,
173704..173706,173773..173781,173842..173844)
/locus_tag="PM3016_164"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73374"
misc_feature order(173254..173256,173332..173334,173689..173691,
173695..173697,173701..173703)
/locus_tag="PM3016_164"
/note="putative active site [active]"
/db_xref="CDD:73374"
misc_feature order(173467..173469,173482..173484,173494..173496,
173506..173508,173518..173520,173632..173634,
173641..173646,173656..173658,173665..173667,
173734..173736)
/locus_tag="PM3016_164"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73374"
gene 173959..176274
/locus_tag="PM3016_165"
/db_xref="GeneID:11882125"
CDS 173959..176274
/locus_tag="PM3016_165"
/codon_start=1
/transl_table=11
/product="protein PcrA"
/protein_id="YP_005310296.1"
/db_xref="GI:379718165"
/db_xref="GeneID:11882125"
/translation="MINQPIDIFQAVNKLNPQQKQAVETVEGPLLIMAGAGSGKTRVL
THRIAYLIATRKAAPWSILAITFTNKAAREMQERVSSLVGPQGGDIWVSTFHSMCVRI
LRRDISRIGFTSNFSILDSGDQLSVIRNIMKEQNIDSKKFEPKAVQAAISNAKNELQT
PEMFERKIGDYFDGIVAKVYSSYQRKLRANNSLDFDDLIMTTIELFKQVPEVLDFYQN
KFQYIHVDEYQDTNRAQYMLCRMLADKHKRICVVGDSDQSIYKWRGADISNILDFEKD
YPNATTILLEQNYRSTSNILNAANKVIANNTGRKVKNLWTDKAEGDKIKVYQADSEHE
EGYFITGEIRRNLDNGRRYKDHAILYRTNAQSRVIEEILIKSDIPYQIVGGVKFYDRK
EIKDILAYLRLISNPDDDISFARVVNVPKRGIGDTSLDRLAGAAAQFGVSLFAMLENV
DSIEMAAKAKNALADFRDMIENLHRMVEYLSVTELTEKMLELSGYRDELRRENTIESQ
ARLENIDEFLSVTMDFEKRNEDKSLVSFLTDLALIADIDSMNADPEEGKQGVVLMTMH
SAKGLEFPVVFIMGLEEGVFPHSRAVADNEELEEERRLAYVGITRAEEQLFLTCARMR
TLFGRTAQNAPSRFLRELPPELLEPARPGGFGRGGGAGFGSAGGERRFGSAGGFGGSP
AAAAARTPVSFRGGGAAPATSATTGGASAASAPKSLDFAMGDKVSHGKWGTGTVVALK
GSGDDTELQIAFPAPVGVKRLLAKFAPITKV"
misc_feature 173998..175878
/locus_tag="PM3016_165"
/note="Superfamily I DNA and RNA helicases [DNA
replication, recombination, and repair]; Region: UvrD;
COG0210"
/db_xref="CDD:30559"
misc_feature 174019..174255
/locus_tag="PM3016_165"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature <175633..175815
/locus_tag="PM3016_165"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene 176331..178349
/locus_tag="PM3016_166"
/db_xref="GeneID:11882126"
CDS 176331..178349
/locus_tag="PM3016_166"
/codon_start=1
/transl_table=11
/product="LigA protein"
/protein_id="YP_005310297.1"
/db_xref="GI:379718166"
/db_xref="GeneID:11882126"
/translation="MPSALETMQALIDEINKHNYLYYTLDQPSISDAEWDALYKRLQE
LEAQTGTILPDSPTLRVGGELLKGFESHRHMARLWSLDKAQTHDDLMAWHARVQKLVN
DYNSKHEDDPLPTPSFVVELKFDGLTLNLTYDKGELVQAATRGSGVVGEGILANVKTI
RSIPLRIPYTEGKIEVQGEGIMNLSVLEAYNQTAAEPLKNARNAAAGALRNLNPKVTA
ERKLNAYFYNIGYSESLQFTDHQEMVEFLRENRFKVSPHVKFFDSIEAVEAELQHLVS
IRHTFDFLIDGLVVKVNDMRTREVLGYTDKFPRWAVAYKFEAEEAVTTLLGVTWNVGR
TGKVTPLARVEPVDLAGVTVQNCTLNNMDDIERKNLKHALGSLIYIRRSNDVIPEILG
KVTEEADGEEIVPPSQCPYCGFPLEKKGPHLFCLNRYDCRPQLVGRIAHFASRDAMEI
DTFSEKTAEQLYDSLEVRDPSDLYYLTFDQLVGLERFGKKKAENLLSALERSKQCDLA
SFLYALGIPNTGKTTTKELADHYRSLEKVMTAEPEELVTLPDIGGIVAESISGFFRDP
AMLRSIERLLAAGVAPTAEEATVVVDENSEFFGKTVVLTGTLSSMGRDECAKKLEKLG
AKVTGSVSKKTDIVIAGESAGSKLTKAQELGIRIIEDEQELLRLLGEA"
misc_feature 176331..178346
/locus_tag="PM3016_166"
/note="NAD-dependent DNA ligase LigA; Validated; Region:
ligA; PRK07956"
/db_xref="CDD:181181"
misc_feature 176346..177284
/locus_tag="PM3016_166"
/note="NAD+ dependent DNA ligase adenylation domain. DNA
ligases catalyze the crucial step of joining the breaks in
duplex DNA during DNA replication, repair and
recombination, utilizing either ATP or NAD(+) as a
cofactor, but using the same basic reaction...; Region:
LIGANc; cd00114"
/db_xref="CDD:29013"
misc_feature order(176571..176573,176691..176693,176697..176699,
176760..176762,176865..176867,177009..177011,
177195..177197,177201..177203)
/locus_tag="PM3016_166"
/note="nucleotide binding pocket [chemical binding]; other
site"
/db_xref="CDD:29013"
misc_feature order(176697..176699,176703..176708)
/locus_tag="PM3016_166"
/note="K-X-D-G motif; other site"
/db_xref="CDD:29013"
misc_feature 176697..176699
/locus_tag="PM3016_166"
/note="catalytic site [active]"
/db_xref="CDD:29013"
misc_feature 177291..177539
/locus_tag="PM3016_166"
/note="NAD-dependent DNA ligase OB-fold domain; Region:
DNA_ligase_OB; pfam03120"
/db_xref="CDD:145978"
misc_feature 178125..178337
/locus_tag="PM3016_166"
/note="Breast Cancer Suppressor Protein (BRCA1),
carboxy-terminal domain. The BRCT domain is found within
many DNA damage repair and cell cycle checkpoint proteins.
The unique diversity of this domain superfamily allows
BRCT modules to interact forming homo...; Region: BRCT;
cd00027"
/db_xref="CDD:28909"
misc_feature order(178170..178172,178182..178184,178191..178193,
178200..178202,178206..178208)
/locus_tag="PM3016_166"
/note="Dimer interface [polypeptide binding]; other site"
/db_xref="CDD:28909"
misc_feature order(178320..178322,178332..178334)
/locus_tag="PM3016_166"
/note="BRCT sequence motif; other site"
/db_xref="CDD:28909"
gene 178456..179454
/locus_tag="PM3016_167"
/db_xref="GeneID:11882127"
CDS 178456..179454
/locus_tag="PM3016_167"
/codon_start=1
/transl_table=11
/product="ECF subfamily RNA polymerase sigma-24 subunit"
/protein_id="YP_005310298.1"
/db_xref="GI:379718167"
/db_xref="GeneID:11882127"
/translation="MLHIVNGDSFAAKLRKAVPDADILVWRESLYEGPLSVSFTDPKT
REARARYFTDLGVPAGQFEHFTSEQEQKLEGFRAYSQIVLWFEYDLYDQAMMIYLLQW
FARHNLEKVRLLLICIDSFPGIEPFRGLGSLTPQQILTLMGTWEEVTGEQLELAVRAW
NVYAGDNPAELFEFIRGDTAALPFLKRALECHLKRLPSLHNGLSAVLESALIGIRDGI
DSPAALFLKISDQWLDYGLGDVQFWRELNDAARCEKPLIVRRGGALPGFGNDNTGASV
KEIRLSLTPFGETVLAGKVDQVAVNGICTWFGGLFLSGKGPVWRWNQELGTAVYKK"
misc_feature 178459..178758
/locus_tag="PM3016_167"
/note="Domain of unknown function (DUF1835); Region:
DUF1835; pfam08874"
/db_xref="CDD:192170"
gene 179761..181285
/locus_tag="PM3016_r4"
/db_xref="GeneID:11882128"
rRNA 179761..181285
/locus_tag="PM3016_r4"
/product="16S ribosomal RNA"
/db_xref="GeneID:11882128"
gene 181559..184486
/locus_tag="PM3016_r5"
/db_xref="GeneID:11882129"
rRNA 181559..184486
/locus_tag="PM3016_r5"
/product="23S ribosomal RNA"
/db_xref="GeneID:11882129"
gene 184659..184774
/locus_tag="PM3016_r6"
/db_xref="GeneID:11882130"
rRNA 184659..184774
/locus_tag="PM3016_r6"
/product="5S ribosomal RNA"
/db_xref="GeneID:11882130"
gene 184789..184876
/locus_tag="PM3016_t3"
/db_xref="GeneID:11882131"
tRNA 184789..184876
/locus_tag="PM3016_t3"
/product="tRNA-Ser"
/db_xref="GeneID:11882131"
gene 184906..184979
/locus_tag="PM3016_t4"
/db_xref="GeneID:11882132"
tRNA 184906..184979
/locus_tag="PM3016_t4"
/product="tRNA-Met"
/db_xref="GeneID:11882132"
gene 185022..185094
/locus_tag="PM3016_t5"
/db_xref="GeneID:11882133"
tRNA 185022..185094
/locus_tag="PM3016_t5"
/product="tRNA-Val"
/db_xref="GeneID:11882133"
gene 185113..185186
/locus_tag="PM3016_t6"
/db_xref="GeneID:11882134"
tRNA 185113..185186
/locus_tag="PM3016_t6"
/product="tRNA-Met"
/db_xref="GeneID:11882134"
gene 185204..185277
/locus_tag="PM3016_t7"
/db_xref="GeneID:11882135"
tRNA 185204..185277
/locus_tag="PM3016_t7"
/product="tRNA-Asp"
/db_xref="GeneID:11882135"
gene 185329..185401
/locus_tag="PM3016_t8"
/db_xref="GeneID:11882136"
tRNA 185329..185401
/locus_tag="PM3016_t8"
/product="tRNA-Phe"
/db_xref="GeneID:11882136"
gene 185410..185482
/locus_tag="PM3016_t9"
/db_xref="GeneID:11882137"
tRNA 185410..185482
/locus_tag="PM3016_t9"
/product="tRNA-Thr"
/db_xref="GeneID:11882137"
gene 185495..185576
/locus_tag="PM3016_t10"
/db_xref="GeneID:11882138"
tRNA 185495..185576
/locus_tag="PM3016_t10"
/product="tRNA-Tyr"
/db_xref="GeneID:11882138"
gene 185595..185667
/locus_tag="PM3016_t11"
/db_xref="GeneID:11882139"
tRNA 185595..185667
/locus_tag="PM3016_t11"
/product="tRNA-Lys"
/db_xref="GeneID:11882139"
gene complement(185854..187104)
/locus_tag="PM3016_169"
/db_xref="GeneID:11882140"
CDS complement(185854..187104)
/locus_tag="PM3016_169"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310299.1"
/db_xref="GI:379718168"
/db_xref="GeneID:11882140"
/translation="MPNLRYGRGTVTLDIPPSLSWDSLSYPASLMEASPRLSLERIRQ
ALASPLGSPVLRDIAQGHERAIILISDGTRPCPNRLMLPLLLQELNDAGITDEQVDIV
VALGAHRRHTPKELVELAGEEIAARVRIHNHSSDSEDCRYVGTTKLGTPVEINRLVAD
ATLRIATGSIQPHALAGVSGGAKALVPGVASWRTIEHNHGLSLKYPGQAGEADTPLYA
DMVEAQSFTPLHFVLNVLLNHDNEVLEALAGDLLETHHRGAQLAAQYFLLPAHPLYDS
IVVSAGGAPRDLQLYQALKPLRNAAAFTRPGGKVLLVAECREMLGSGVLQDWLETMTD
LQRSTAALKQHFVLGAHKLLHVEEVLKRVEVHLYSSLAPHWVDLLGFSPVHDPSEWIL
SVTQQRNVSLAIIPFGSLTFPAPP"
misc_feature complement(185866..187098)
/locus_tag="PM3016_169"
/note="Domain of unknown function (DUF2088); Region:
DUF2088; cl15406"
/db_xref="CDD:199542"
gene 187302..188402
/locus_tag="PM3016_170"
/db_xref="GeneID:11882141"
CDS 187302..188402
/locus_tag="PM3016_170"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310300.1"
/db_xref="GI:379718169"
/db_xref="GeneID:11882141"
/translation="MDWGTVREQLEGILSISVDTVRWPVSDWDHASEASGEPVSSVIK
NGRVYWLVQKQESEALLFAVDEQVVSDVERRLVDLVLSTKKEPEPKPARMPTEEERKA
GLVRDWLHQQQERGFTQAEMPDQLVSLLSLYSTKVPILLYGDYTTSRRVHYAELKKLL
DSFFDAEITLIPLTEKEWLILGSEKILTMDGGDDRISDEETLEDKLAAMGYGLHEMLE
NEWVGEAHLAVHYPMTPAKSLYSVVLQLRETIMLGRTYHVGSSMHLPWELQLEKLVHL
VPEAEKASFLERVLKRLDVAFDPETMTTLEQFFQLDCNVSETAKKLYIHRNTLLYRLD
KFKQETGLDVRTFNNAVLVKIAMLLYKVTKRK"
misc_feature <187437..188399
/locus_tag="PM3016_170"
/note="Regulator of polyketide synthase expression [Signal
transduction mechanisms / Secondary metabolites
biosynthesis, transport, and catabolism]; Region: COG2508"
/db_xref="CDD:32578"
misc_feature 188211..188378
/locus_tag="PM3016_170"
/note="PucR C-terminal helix-turn-helix domain; Region:
HTH_30; pfam13556"
/db_xref="CDD:205734"
gene 188493..189617
/locus_tag="PM3016_171"
/db_xref="GeneID:11882142"
CDS 188493..189617
/locus_tag="PM3016_171"
/codon_start=1
/transl_table=11
/product="protein MsmX"
/protein_id="YP_005310301.1"
/db_xref="GI:379718170"
/db_xref="GeneID:11882142"
/translation="MAGVRLNHIVKRYPGAAEATVKDFHLDIKDKEFLVLVGASGCGK
STTLRMIAGLEEITEGELYIGDRLVNDVAPKDRDIAMVFQSYALYPHMNVYQNMAFGL
KLRKFKKADIDARVREAAKILDIEHLLDRKPKALSGGQRQRVALGRAIVREPQVFLMD
EPLSNLDAKLRVQMRAEIGKLHKRLETTIIYVTHDQTEAMTMGDRIVVMDKGIIQQAA
TPEEIYNYPKNMFVAGFIGSPSMNFVSGTFAEQNGGVYFKAQGLNVEVPEGKAKVLRE
KGYIGKEVVMGIRPEDFHEEAIFMEASPNTIVNVNIELSENLGHEMYLYLNGIGTQTV
IARVDGRASFKEGTTVKLALDMNKAHFFDKETTQSILVNA"
misc_feature 188493..189602
/locus_tag="PM3016_171"
/note="glycerol-3-phosphate transporter ATP-binding
subunit; Provisional; Region: ugpC; PRK11650"
/db_xref="CDD:183258"
misc_feature 188502..189140
/locus_tag="PM3016_171"
/note="The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two...; Region:
ABC_MalK_N; cd03301"
/db_xref="CDD:73060"
misc_feature 188604..188627
/locus_tag="PM3016_171"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73060"
misc_feature order(188613..188618,188622..188630,188742..188744,
188970..188975,189072..189074)
/locus_tag="PM3016_171"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73060"
misc_feature 188733..188744
/locus_tag="PM3016_171"
/note="Q-loop/lid; other site"
/db_xref="CDD:73060"
misc_feature 188898..188927
/locus_tag="PM3016_171"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73060"
misc_feature 188958..188975
/locus_tag="PM3016_171"
/note="Walker B; other site"
/db_xref="CDD:73060"
misc_feature 188982..188993
/locus_tag="PM3016_171"
/note="D-loop; other site"
/db_xref="CDD:73060"
misc_feature 189060..189080
/locus_tag="PM3016_171"
/note="H-loop/switch region; other site"
/db_xref="CDD:73060"
gene 189742..190683
/locus_tag="PM3016_172"
/db_xref="GeneID:11882143"
CDS 189742..190683
/locus_tag="PM3016_172"
/codon_start=1
/transl_table=11
/product="protein HprK"
/protein_id="YP_005310302.1"
/db_xref="GI:379718171"
/db_xref="GeneID:11882143"
/translation="MAKKVKVSDLVREFHLEVICGEEGLKRPIATADLYRPGLELAGY
YEFHPHDRVQILGKTELTFFDGLTSEERTDRMERICSPKDIPCVILSRSLEAPIELLA
SANEHKIPVLRTAMATTILASRLTNFLENRLAPTTTIHGVLVDVYGIGMLISGSSGIG
KSETALELVKRGHRLIADDAVEIRQTADHQLIGNAPELIRHLLEIRGIGIINVMTLFG
AGAVRTEKKIAVVCKLETWQQDKQYDRLGLDEETTRIIDTDVPLVTIPVRPGRNLAVI
IEVAAMNYRLKRMGYNAALQFTNKLTESLAEDMDDLD"
misc_feature 189748..190665
/locus_tag="PM3016_172"
/note="HPr kinase/phosphorylase; Provisional; Region:
PRK05428"
/db_xref="CDD:180075"
misc_feature 189748..190131
/locus_tag="PM3016_172"
/note="HPr Serine kinase N terminus; Region: Hpr_kinase_N;
pfam02603"
/db_xref="CDD:190362"
misc_feature 190144..190593
/locus_tag="PM3016_172"
/note="HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates the
utilization of carbon sources by gram-positive bacteria.
It catalyzes both the ATP-dependent...; Region: HprK_C;
cd01918"
/db_xref="CDD:29833"
misc_feature order(190153..190155,190159..190161,190210..190215,
190222..190224,190237..190239,190249..190251,
190276..190281,190285..190287,190333..190335,
190351..190353,190363..190371,190384..190386,
190474..190482,190531..190533,190564..190566,
190573..190575)
/locus_tag="PM3016_172"
/note="Hpr binding site; other site"
/db_xref="CDD:29833"
misc_feature order(190159..190161,190213..190215,190219..190227,
190273..190278,190351..190353,190357..190359)
/locus_tag="PM3016_172"
/note="active site"
/db_xref="CDD:29833"
misc_feature order(190231..190233,190237..190239,190249..190254,
190261..190263,190333..190335,190345..190347,
190363..190365,190369..190377,190384..190392,
190528..190530,190576..190581,190585..190587)
/locus_tag="PM3016_172"
/note="homohexamer subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:29833"
gene 190765..191814
/locus_tag="PM3016_173"
/db_xref="GeneID:11882144"
CDS 190765..191814
/locus_tag="PM3016_173"
/codon_start=1
/transl_table=11
/product="prolipoprotein diacylglyceryl transferase"
/protein_id="YP_005310303.1"
/db_xref="GI:379718172"
/db_xref="GeneID:11882144"
/translation="MLFAMSTVAFSIGPISVHWYGIILGLAALTGLMLAVQEGKRFGI
PSDFFMDMLLIGVPSAIIGARIYYVAFQWDDYKDNPITALYIWQGGIAIYGALIGAII
GAGIYFKRKGYSFWRIADICAPGLIVGQAIGRWGNFINKEAHGGPVDAAFLSNNLHLP
SWIVSQMQIDGTYYHPTFLYESLWNLVGLLLLFVLRRQRFLRAGELFLSYFIWYGIGR
FFIEGLRTDSLGFTGPDWLAALMNGLWSPMTLLGFTPGDMSMNGGNVRVSQMLALLFI
IGAVALMIIRRATGASSEKYSDPIYRRGEAPSQDAGAAGNAAGTPAGTAGNGKQTAGT
EHHSKEPDHDPNRTV"
misc_feature 190777..191658
/locus_tag="PM3016_173"
/note="prolipoprotein diacylglyceryl transferase;
Reviewed; Region: PRK12437"
/db_xref="CDD:183527"
gene 191792..192445
/locus_tag="PM3016_174"
/db_xref="GeneID:11882145"
CDS 191792..192445
/locus_tag="PM3016_174"
/codon_start=1
/transl_table=11
/product="pyrophosphatase PpaX"
/protein_id="YP_005310304.1"
/db_xref="GI:379718173"
/db_xref="GeneID:11882145"
/translation="MIQTVLFDLDGTILDTNELIIQSFLHTFEGVTAEPLTRHHIIPN
MGRPLVEQMVFFSGREEVEDLVAKYRHFNLTRHDELVKEFPKVRETLARLHAAGIRMG
VVTSKIRKTTEMGLKLTGIYDYFGSIVTVEDVEKAKPDPEGIRKALQELGADPATAVM
VGDSHYDIEAAHNAGLPSVAVAWSLKGMEYLQGYSPTHIIHDIEQLLGIIGLEEKQV"
misc_feature 191792..192433
/locus_tag="PM3016_174"
/note="pyrophosphatase PpaX; Provisional; Region:
PRK13288"
/db_xref="CDD:183951"
misc_feature 191996..192334
/locus_tag="PM3016_174"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 192104..192106
/locus_tag="PM3016_174"
/note="motif II; other site"
/db_xref="CDD:119389"
gene 192442..192945
/locus_tag="PM3016_175"
/db_xref="GeneID:11882146"
CDS 192442..192945
/locus_tag="PM3016_175"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310305.1"
/db_xref="GI:379718174"
/db_xref="GeneID:11882146"
/translation="MRQTDRYPVDGPNSLWQVYRTIPRWKAVRNFIFIQISRYAPSLP
LKLWIYRRILGMKVGRHTSFALMVMVDVFFPERIEVGENTIIGYNSTILTHEYLIKEY
RLGHVRIGSNVMIGANTTVLPGVTIGDGAIVGAGSVVHKDVAPYSFVAGNPLQVIRTD
VREDDRA"
misc_feature 192454..192918
/locus_tag="PM3016_175"
/note="Acetyltransferase (isoleucine patch superfamily)
[General function prediction only]; Region: WbbJ; COG0110"
/db_xref="CDD:30459"
misc_feature 192604..192912
/locus_tag="PM3016_175"
/note="Maltose O-acyltransferase (MAT)-like: This family
is composed of maltose O-acetyltransferase, galactoside
O-acetyltransferase (GAT), xenobiotic acyltransferase
(XAT) and similar proteins. MAT and GAT catalyze the
CoA-dependent acetylation of the...; Region: LbH_MAT_like;
cd04647"
/db_xref="CDD:100053"
misc_feature order(192622..192624,192628..192630,192652..192654,
192688..192690,192694..192696,192712..192714,
192730..192738,192775..192777,192781..192783,
192790..192792,192847..192849,192895..192897)
/locus_tag="PM3016_175"
/note="trimer interface [polypeptide binding]; other site"
/db_xref="CDD:100053"
misc_feature order(192628..192630,192634..192636,192730..192732,
192736..192738,192781..192783,192787..192792,
192805..192807,192841..192846,192859..192864,
192889..192894,192898..192900)
/locus_tag="PM3016_175"
/note="active site"
/db_xref="CDD:100053"
misc_feature order(192628..192630,192634..192636,192730..192732)
/locus_tag="PM3016_175"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100053"
misc_feature order(192730..192732,192736..192738,192781..192783,
192787..192792,192805..192807,192835..192837,
192841..192846,192859..192864,192883..192885,
192889..192894,192898..192900,192910..192912)
/locus_tag="PM3016_175"
/note="CoA binding site [chemical binding]; other site"
/db_xref="CDD:100053"
gene 193251..194429
/locus_tag="PM3016_176"
/db_xref="GeneID:11882147"
CDS 193251..194429
/locus_tag="PM3016_176"
/codon_start=1
/transl_table=11
/product="histidyl-tRNA synthetase 2"
/protein_id="YP_005310306.1"
/db_xref="GI:379718175"
/db_xref="GeneID:11882147"
/translation="MSKPKVFEKPTGVKDYLPEAAAKLRSIELNVMQCMERWGYREII
TPTLEYYDTVGVASSTEDKKLFKLLDRNGTTLVLRSDMTAPIARVVSSLLQNEAFPLR
LSYQANVFRAFEAEAGRDAEFFQTGVELVGDASSESDAEVIALAIACLQAAGVKQFKI
AVGHVGFLNGLLQETLKHDAEAQTLLKGCLLNRDYVGYREALQELQLTERVRGELEGI
LRLRGGQEICRQARELTEDPVAQHAIAHLCEVWDVLQAYGVSDHVLIDLTMIGDFSYY
TGMTFEGYAADLGFPVCSGGRYDNLLKQFGRPAPATGFALKTNRILEVVGRETLGRRL
RKTLVLYTAGRRADALARAAELRTEEGRTVETRLIPEGFFVAVQGLPYDDVLEFVGEG
"
misc_feature 193290..194228
/locus_tag="PM3016_176"
/note="ATP phosphoribosyltransferase, regulatory subunit;
Region: hisZ_biosyn_reg; TIGR00443"
/db_xref="CDD:200015"
misc_feature 193311..194225
/locus_tag="PM3016_176"
/note="Class II Histidinyl-tRNA synthetase (HisRS)-like
catalytic core domain. HisRS is a homodimer. It is
responsible for the attachment of histidine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent...; Region:
HisRS-like_core; cd00773"
/db_xref="CDD:73226"
misc_feature order(193323..193325,193359..193361,193374..193394,
193452..193457,193491..193493,193497..193499,
193512..193517,193524..193529,193611..193616,
193635..193637,193659..193661,193671..193673,
193680..193682,194136..194138,194187..194192)
/locus_tag="PM3016_176"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73226"
misc_feature 193368..193394
/locus_tag="PM3016_176"
/note="motif 1; other site"
/db_xref="CDD:73226"
misc_feature order(193491..193493,193497..193499,193581..193583,
193587..193589,193608..193610,193617..193619,
193623..193625,193635..193637,194061..194063,
194067..194069,194073..194078,194121..194123,
194136..194138,194190..194192,194199..194201,
194208..194210)
/locus_tag="PM3016_176"
/note="active site"
/db_xref="CDD:73226"
misc_feature 193578..193592
/locus_tag="PM3016_176"
/note="motif 2; other site"
/db_xref="CDD:73226"
misc_feature order(194187..194201,194208..194210)
/locus_tag="PM3016_176"
/note="motif 3; other site"
/db_xref="CDD:73226"
gene 194444..195091
/locus_tag="PM3016_177"
/db_xref="GeneID:11882148"
CDS 194444..195091
/locus_tag="PM3016_177"
/codon_start=1
/transl_table=11
/product="protein HisG"
/protein_id="YP_005310307.1"
/db_xref="GI:379718176"
/db_xref="GeneID:11882148"
/translation="MQELLKVAMPKGRIYKQASKLFREAGLAIPDDADDSRKLIIQVP
EANMEFIMAKPVDVPTYVEYGVADIGVVGKDVLMEENRDVYELLDLGIARCRMSVIAL
PDWQPVINPRVATKYPNVASQYFREQGQQVEVIKLNGSIELAPMIGLADRIVDMVETG
STIRENGLKEYEQIFSITSRLIANRVSYRMKNNAIQALCDRLQPAIAAATAGAGK"
misc_feature 194456..>195052
/locus_tag="PM3016_177"
/note="ATP phosphoribosyltransferase [Amino acid transport
and metabolism]; Region: HisG; COG0040"
/db_xref="CDD:30389"
misc_feature 194456..195052
/locus_tag="PM3016_177"
/note="ATP phosphoribosyltransferase catalytic subunit;
Reviewed; Region: hisG; PRK01686"
/db_xref="CDD:179320"
gene 195243..196535
/locus_tag="PM3016_178"
/db_xref="GeneID:11882149"
CDS 195243..196535
/locus_tag="PM3016_178"
/codon_start=1
/transl_table=11
/product="protein HisD"
/protein_id="YP_005310308.1"
/db_xref="GI:379718177"
/db_xref="GeneID:11882149"
/translation="MKVMPASEFSLKREVEYGSPEQNEAVQRIIEEVRQDGDAALRRF
AQQFDGVNVGDLRVSSAEIEAAYQQVDEDFLTAIREASVNIRRFHEKQMRTSWMDLQG
DGSILGQVIRPLRRVGLYVPGGKAAYPSSVLMNAIPAQVAGVPEIVMVTPPATAGVEG
IDPHILVAAAEAGVKEIYRVGGAQAVAALAYGTESIPAADKIVGPGNIYVALAKRYVF
GAVDIDSIAGPSEIVVLADGSADPAYVAADLLSQAEHDEMASAILITPSEDLANAVRT
EVELQLQALPRREIAAQSIRDYGAILTVSSLEEGVDAVNRLAPEHLEILVADPFQYLS
RIENAGAVFLGPYSSEPVGDYFAGPNHVLPTNGTARFSSPLNVDDFLKKSSVIYYSKE
ALLRDGEKIMTLARHEGLEAHARAIEIRLEKEGNRNGQ"
misc_feature 195312..196481
/locus_tag="PM3016_178"
/note="Histidinol dehydrogenase, HisD, E.C 1.1.1.23.
Histidinol dehydrogenase catalyzes the last two steps in
the L-histidine biosynthesis pathway, which is conserved
in bacteria, archaea, fungi, and plants. These last two
steps are (i) the NAD-dependent...; Region: Histidinol_dh;
cd06572"
/db_xref="CDD:119329"
misc_feature 195318..196502
/locus_tag="PM3016_178"
/note="histidinol dehydrogenase; Region: hisD; TIGR00069"
/db_xref="CDD:161689"
misc_feature order(195384..195386,195600..195602,195606..195611,
195633..195635,195696..195698,195783..195788,
195792..195794,195855..195863,195867..195872,
196005..196007)
/locus_tag="PM3016_178"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:119329"
misc_feature order(195459..195464,195471..195476,195480..195482,
195489..195494,195501..195506,195513..195518,
195537..195539,195543..195545,195555..195569,
195576..195578,195582..195584,195618..195632,
195840..195842,195885..195887,195897..195899,
195969..195974,195981..195986,195990..195998,
196002..196007,196215..196217,196230..196232,
196239..196244,196248..196274,196278..196280,
196284..196289,196293..196307,196311..196313,
196317..196319,196347..196352,196356..196370,
196374..196379,196386..196409,196452..196457,
196461..196481)
/locus_tag="PM3016_178"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:119329"
misc_feature order(195624..195626,195630..195632,195930..195932,
196005..196007,196200..196205,196290..196292,
196302..196307,196323..196325,196464..196466,
196470..196472,196479..196481)
/locus_tag="PM3016_178"
/note="product binding site; other site"
/db_xref="CDD:119329"
misc_feature order(195630..195632,195930..195932,195996..195998,
196005..196007,196200..196205,196290..196292,
196302..196307,196323..196325,196464..196466,
196470..196472,196479..196481)
/locus_tag="PM3016_178"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:119329"
misc_feature order(195996..195998,196005..196007,196302..196304,
196479..196481)
/locus_tag="PM3016_178"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:119329"
misc_feature 196200..196205
/locus_tag="PM3016_178"
/note="catalytic residues [active]"
/db_xref="CDD:119329"
gene 196525..197136
/locus_tag="PM3016_179"
/db_xref="GeneID:11882150"
CDS 196525..197136
/locus_tag="PM3016_179"
/codon_start=1
/transl_table=11
/product="protein HisB"
/protein_id="YP_005310309.1"
/db_xref="GI:379718178"
/db_xref="GeneID:11882150"
/translation="MANEQDQQAVRRSEVARKTNETDIRLAFAVDGSGVSEIETDVPF
LNHMLDLFTKHGQFDLRVDAKGDVEIDDHHTVEDIGICLGQTLREALGDKRGIKRYAS
VFVPMDEALAQVVIDVSNRPHFEYRAQYPSQTVGSFQVELVHEFLWKLALEARITLHV
IVHYGLNTHHMIEAVFKALGRALDEATSIDPRVQGVPSTKGVL"
misc_feature 196555..197133
/locus_tag="PM3016_179"
/note="imidazoleglycerol-phosphate dehydratase; Validated;
Region: hisB; PRK00951"
/db_xref="CDD:179179"
misc_feature 196561..197133
/locus_tag="PM3016_179"
/note="Imidazoleglycerol-phosphate dehydratase; Region:
IGPD; cd07914"
/db_xref="CDD:153419"
misc_feature order(196585..196587,196663..196665,196675..196677,
196684..196689,196741..196746,196753..196755,
196819..196821,196843..196848,196885..196887,
196957..196959,197029..197034,197041..197043)
/locus_tag="PM3016_179"
/note="putative active site pocket [active]"
/db_xref="CDD:153419"
misc_feature order(196651..196656,196663..196665,196729..196737,
196741..196746,196918..196932,196939..196941,
196945..196947,196954..196959,197020..197034)
/locus_tag="PM3016_179"
/note="4-fold oligomerization interface [polypeptide
binding]; other site"
/db_xref="CDD:153419"
misc_feature order(196663..196665,196741..196746,196753..196755,
196957..196959,197029..197034,197041..197043)
/locus_tag="PM3016_179"
/note="metal binding residues [ion binding]; metal-binding
site"
/db_xref="CDD:153419"
misc_feature order(196816..196818,196822..196824,196828..196836,
196840..196848,196852..196857,196867..196875,
196885..196887,196891..196893,196993..196995,
196999..197001,197005..197007,197011..197013,
197065..197067,197074..197076,197092..197094)
/locus_tag="PM3016_179"
/note="3-fold/trimer interface [polypeptide binding];
other site"
/db_xref="CDD:153419"
gene 197140..197766
/locus_tag="PM3016_180"
/db_xref="GeneID:11882151"
CDS 197140..197766
/locus_tag="PM3016_180"
/codon_start=1
/transl_table=11
/product="protein HisH"
/protein_id="YP_005310310.1"
/db_xref="GI:379718179"
/db_xref="GeneID:11882151"
/translation="MIAIIDYGVGNLHSVRSAVERLGYEALVTSDEAEILGAAGAILP
GVGAFGDAMAHLREAKLADTVRKAADSGKPLLGICLGMQLLFSRSEEHGEHEGLGLLP
GEVIRFRGDYKVPHMGWNKLSYKQESPLFRELPEGHVYFVHSYHVLPEQASDLLATTD
YYQEVTAIVGRGNVFGMQFHPEKSGSVGMKLLGNFLALCEGRAAAGQL"
misc_feature 197140..197739
/locus_tag="PM3016_180"
/note="imidazole glycerol phosphate synthase subunit HisH;
Provisional; Region: hisH; PRK13141"
/db_xref="CDD:183868"
misc_feature 197143..197727
/locus_tag="PM3016_180"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in imidazole glycerol phosphate synthase (IGPS);
Region: GATase1_IGP_Synthase; cd01748"
/db_xref="CDD:153219"
misc_feature order(197257..197280,197368..197382,197677..197679,
197683..197685)
/locus_tag="PM3016_180"
/note="putative active site [active]"
/db_xref="CDD:153219"
misc_feature 197257..197280
/locus_tag="PM3016_180"
/note="oxyanion strand; other site"
/db_xref="CDD:153219"
misc_feature order(197374..197376,197677..197679,197683..197685)
/locus_tag="PM3016_180"
/note="catalytic triad [active]"
/db_xref="CDD:153219"
gene 197808..198566
/locus_tag="PM3016_181"
/db_xref="GeneID:11882152"
CDS 197808..198566
/locus_tag="PM3016_181"
/codon_start=1
/transl_table=11
/product="protein HisF"
/protein_id="YP_005310311.1"
/db_xref="GI:379718180"
/db_xref="GeneID:11882152"
/translation="MLAKRIIPCLDVKDGRVVKGVNFVNLRDAGDPVELAAIYDKEGA
DELVFLDISASHEGRATMVEVVQQTAEQVTIPFTVGGGIGSVDDMKRMLRAGADKIGI
NTAALRNPQLISDGARRFGSQCIVVAVDARFNSEWGEWEVFTHGGRNATGIRALEWVK
RAETLGAGELLLTSMDADGTKDGFDIKLTRAVSELVSIPVIASGGAGRKEHFAEVFEQ
GKADAGLAATIFHYKEMTIEEVKDDLRSKGVEVR"
misc_feature 197817..198548
/locus_tag="PM3016_181"
/note="The cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). Imidazole glycerol phosphate synthase
(IGPS) catalyzes the fifth step of histidine biosynthesis,
the formation of the imidazole ring. IGPS converts
N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731"
/db_xref="CDD:73393"
misc_feature 197820..198515
/locus_tag="PM3016_181"
/note="Histidine biosynthesis protein; Region:
His_biosynth; pfam00977"
/db_xref="CDD:201535"
misc_feature order(197862..197864,197955..197957,198051..198053,
198114..198119,198189..198191,198195..198197,
198243..198245,198324..198326,198339..198344,
198414..198422,198486..198491)
/locus_tag="PM3016_181"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73393"
misc_feature order(197925..197927,197940..197942,198006..198008,
198018..198020,198027..198029,198033..198035,
198090..198092,198099..198104,198174..198176,
198312..198314,198396..198398,198471..198473)
/locus_tag="PM3016_181"
/note="glutamase interaction surface [polypeptide
binding]; other site"
/db_xref="CDD:73393"
gene 198563..199270
/locus_tag="PM3016_182"
/db_xref="GeneID:11882153"
CDS 198563..199270
/locus_tag="PM3016_182"
/codon_start=1
/transl_table=11
/product="protein HisI"
/protein_id="YP_005310312.1"
/db_xref="GI:379718181"
/db_xref="GeneID:11882153"
/translation="MSGAQGAVESIEALQAAVKWDAHGLVPAIVQDALSKEVLMMAYM
NEESLKLTLESGETWFWSRSRQELWHKGATSGHTQKVTSLRYDCDGDTLLVLVEQKGP
ACHTGSYSCFFNDVKLGALAGAEAAAANESDRFAMLAKVEAVIAQRDAERPEGAYTTY
LFEKGIDKILKKIGEEAGEVIIAAKNQDNDELRYEATDLLFHLMVLLRERKVPLDDLM
FELGRRYNKPKSEYSLE"
misc_feature 198593..199234
/locus_tag="PM3016_182"
/note="bifunctional phosphoribosyl-AMP
cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein;
Reviewed; Region: PRK02759"
/db_xref="CDD:179470"
misc_feature 198596..198913
/locus_tag="PM3016_182"
/note="phosphoribosyl-AMP cyclohydrolase; Reviewed;
Region: hisI; PRK00051"
/db_xref="CDD:178825"
misc_feature 198974..199225
/locus_tag="PM3016_182"
/note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
3.6.1.8) MazG-like domain found in Escherichia coli
phosphoribosyl-ATP pyrophosphohydrolase (HisIE or
PRATP-PH) and its homologs; Region: NTP-PPase_HisIE_like;
cd11534"
/db_xref="CDD:212141"
misc_feature order(199088..199090,199097..199099,199145..199147,
199154..199156)
/locus_tag="PM3016_182"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:212141"
gene 199283..200098
/locus_tag="PM3016_183"
/db_xref="GeneID:11882154"
CDS 199283..200098
/locus_tag="PM3016_183"
/codon_start=1
/transl_table=11
/product="HisJ family histidinol phosphate phosphatase"
/protein_id="YP_005310313.1"
/db_xref="GI:379718182"
/db_xref="GeneID:11882154"
/translation="MRIDYHTHHVRCGHASGDLEEYVVKGIEIGLTQLGLSDHMPLLH
VDPETYLPGMAMPMDELPRYVEEAFRLQQKYKDQIDIRVGLEGDYIEGWEKQIEEIIR
AYPWDYVIGSVHFLGEWDITDYRQTDGWKERDAYAVYEQYYDAVVKACRTGFYDYIGH
IDVIKRFGFKPDRNVEHLENMALEAVKAANMAIELNASGLRMPVQEMFPSRRMLEYAL
KLGIPVTLGSDAHQPERLAQYLDEASALLQDVGFTDLATFKVRNRQNVPIGFE"
misc_feature 199283..200089
/locus_tag="PM3016_183"
/note="histidinol-phosphatase; Provisional; Region:
PRK07328"
/db_xref="CDD:180932"
misc_feature 199913..>199990
/locus_tag="PM3016_183"
/note="PHP-associated; Region: PHP_C; pfam13263"
/db_xref="CDD:205443"
gene 200218..201168
/locus_tag="PM3016_184"
/db_xref="GeneID:11882155"
CDS 200218..201168
/locus_tag="PM3016_184"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310314.1"
/db_xref="GI:379718183"
/db_xref="GeneID:11882155"
/translation="MYSDKMKIFSGSSNPKLAEQICRELEVPLGQIKLSRFKSGEIYC
LYEESIRNCDVFLVQTFSHSINENFMELLVMMDAAKRASARTINLVVPYYGYSRQERK
AAPREPISAKLVADLLTAAGADRVITIDLHAPAIQGFFDIPVDHLTALDLISDYMKKL
NVPNPIIVSPDAGRATTAEKMANILDAPFAMMIKKRPAHNEAVITHVIGDVAGMTPII
IEDLIDTGTTIVNVVEGLKERGAHDAYICATHPVFSGPALQRLDHPNIKEVVITDSIA
IPEDHSARFRVLSVSHLLADAINIIMSGGSLSSLFKYGGV"
misc_feature 200233..201150
/locus_tag="PM3016_184"
/note="ribose-phosphate pyrophosphokinase; Provisional;
Region: PRK01259"
/db_xref="CDD:179265"
misc_feature 200233..200583
/locus_tag="PM3016_184"
/note="N-terminal domain of ribose phosphate
pyrophosphokinase; Region: Pribosyltran_N; pfam13793"
/db_xref="CDD:205966"
misc_feature 200662..201039
/locus_tag="PM3016_184"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(200728..200730,200734..200736,200875..200883,
200887..200901,200971..200973)
/locus_tag="PM3016_184"
/note="active site"
/db_xref="CDD:206754"
gene 201339..203093
/locus_tag="PM3016_185"
/db_xref="GeneID:11882156"
CDS 201339..203093
/locus_tag="PM3016_185"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310315.1"
/db_xref="GI:379718184"
/db_xref="GeneID:11882156"
/translation="MEKKKRALPQTHTNVVPMKMDATFFFEKAVQSMDRYHYDKALKY
FRRAAEYEPENAVNHCNLAGLLSEMGNYEESNRILQHVLDQIDPAMTECYFYMANNFA
NMENYESAEKAIVHYLENDPTGQFLEESEEMMELLSFELERPAKLSTIKSREGLFEHD
RARALLEEGKFSEAVRILENIVKKHSDFMAARNNLALAYYYMGHFDKSVDMIKQVLEL
EPGNLHALCNLAIFYQHFGDKVALGELLEVLRKTYPFHQDHVFKLATTMGILSEHDKA
YRLFKRLLKTGEAGLDPCLFHYTAVAAYNTGRYAEAERQWRQAEKFDPTSEIPKFYLN
LLNKYKQDKIKPNVSYHYHLPFEEQFRGIERGENGLPEHLKRDPLVRSSFFWALRHGD
GDTKLQVIQAFALIGDDEVKDSLTQFILEPGEDDYLKKVAIFVLRSIGVREPLQAVLE
GKETTVAPSPFAPNLPVWDRKWQGIMEMAMRHMARRYDMVQQYDLQTLWVEYLTRVFP
NVPKMAKPEGWAAALEYLTAKMHRRPITYGDAAARYGVSIATVSKNAKTIDEACGLRE
KMAAIFSKFAELDSSHES"
misc_feature 201399..201602
/locus_tag="PM3016_185"
/note="TPR repeat; Region: TPR_11; pfam13414"
/db_xref="CDD:205592"
misc_feature 201411..201707
/locus_tag="PM3016_185"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(201414..201419,201426..201431,201516..201521,
201525..201530,201537..201542,201621..201626,
201633..201638,201645..201650)
/locus_tag="PM3016_185"
/note="binding surface"
/db_xref="CDD:29151"
misc_feature order(201423..201425,201459..201461,201471..201473,
201480..201482,201525..201527,201561..201563,
201573..201575,201582..201584,201630..201632,
201666..201668,201678..201680,201687..201689)
/locus_tag="PM3016_185"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature 201819..202100
/locus_tag="PM3016_185"
/note="Tetratricopeptide repeat domain; typically contains
34 amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi; Region: TPR; cd00189"
/db_xref="CDD:29151"
misc_feature order(201822..201824,201858..201860,201870..201872,
201879..201881,201924..201926,201960..201962,
201972..201974,201981..201983,202026..202028,
202062..202064,202074..202076,202083..202085)
/locus_tag="PM3016_185"
/note="TPR motif; other site"
/db_xref="CDD:29151"
misc_feature order(201825..201830,201915..201920,201924..201929,
201936..201941,202017..202022,202029..202034,
202041..202046)
/locus_tag="PM3016_185"
/note="binding surface"
/db_xref="CDD:29151"
gene 203138..204091
/locus_tag="PM3016_186"
/db_xref="GeneID:11882157"
CDS 203138..204091
/locus_tag="PM3016_186"
/codon_start=1
/transl_table=11
/product="protein TrxB"
/protein_id="YP_005310316.1"
/db_xref="GI:379718185"
/db_xref="GeneID:11882157"
/translation="MYKSIVIGTGPAGLTAAIYLARANLNPLVIEGPEPGGQLTTTTE
VENFPGFPEGIMGPELMANMRKQAERFGAEFKTGWVNNVDLSKRPFKLNVEGLGDIEA
ESLIISTGASAKLLGIANEKESIGRGVSTCATCDGFFFRGKKIIVVGGGDSAMEEANF
LTRFATEVRLVHRREELRASKIMQDRARENSKITWSLNRTPLEVISGEKGVTGLKVKN
NETGEEEILETDGIFVAIGHKPNTDFLKGQIVTDEVGYIQVKPGSSLTNIEGVFACGD
VQDSKYRQAITAAGSGCMAALDCEKFLEGHMVHDWSQSLNK"
misc_feature 203150..204046
/locus_tag="PM3016_186"
/note="thioredoxin-disulfide reductase; Region:
TRX_reduct; TIGR01292"
/db_xref="CDD:200090"
misc_feature 203153..>203293
/locus_tag="PM3016_186"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
misc_feature 203567..203797
/locus_tag="PM3016_186"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
gene 204248..209482
/locus_tag="PM3016_187"
/db_xref="GeneID:11882158"
CDS 204248..209482
/locus_tag="PM3016_187"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310317.1"
/db_xref="GI:379718186"
/db_xref="GeneID:11882158"
/translation="MYRILWILGKEKSDSLKKLSKRIIPAVLSSVLLIGGSLPVGAAP
DAGQGLAVDPANMLLVPSLQLQGLAASPVQLLQQKGLTVTENKDTGAPRFLMGALSAR
LNTDEAVLQYVSLNQQVFGLQNAAAELGLVRKNTDDIGQSHYLYQQKYRGVPVYGKYI
NLHLDSSKKAYAIQNQLMGSVGGLSVDVTPALSGQEAVAKLQAELESTIGQSITLGGK
IGEKVEVPLPEAKLVVYPFEGETHLAYEIKFTYIQPEIGSWVGFVDAHTGAIIHKYSN
LHHADGDGAVVSENVGHKGDKKQLNVLKDGNTYYLADITKRMFMEHPGHEDSGEVLTL
EYAGETPQGFLGKLQSSNSPVFNSQKGTSAAHGVDAHYYAGHVYDFFLKEFGRNSLDG
KGMDIVSMVHVPQAMDNAYWLGGANAIIYGDGDRYDCLACAGDIVAHELSHGVTQFSA
GLVYENQPGALNESFSDIIASVFDSEDWLLGEDTGNILRSLENPEQHGQPKHMDHFQE
LYDDIVIGDNGGVHINSGIPNHAAYLIAQKVDALKIAGWNGRKVLGQLAYGTLTKYLT
PVSEFEDARDGFVASVSDWQKANGIPVEQAQKVKESVIAAWTEVGLAYTSGSEAHQSS
NITSFTIPSVANEQQTQIDLANATVTYYAPKGTNISNLAPQFTVSSGAAVSPAAGTPQ
DFSKGGVKYTVTSQSGASKVWTVFVVEAGKDTDAPKYQRSSFSYDNKTLTVEFNEHVL
DFRYYAGARERTLKDKIWVVDADGKNKPLGAEDTAQVKDGKLQISFGHPVTYASVRSI
VIEPAAVVDLTGNYTVKEEDTVFIPVIPAPVPVPLGTTIIAGGANGALVELYNAENDK
LVSSIQLGQQENRAHFFYIPDGKYILRQVIASDSNPASLASAPITIARLQAPANLHAT
EVTPQSVRLQWEPVSNGTPVTYEVYGYNSSNGSVVAAASGVTDAVYNVTGLTPGGYMF
SVKAVDAAGGRVSTPAVTTVDHAVTVSADTYAPFWSTYAALGDSLAAGVTHEGRLGLG
YPDYIWNELKNQGQPVYFDKRYASPGYTSGDVLSDLKRSVTRSVYGQPGEGSIADTVR
SANLITLNAGANDLLAADKIAGGTLSETQAQQLLASIGSNIGSILDLIKEINPNASVF
VMGYYNPFPHGTEQEKQRAQLLIEELNKVIKDVAEKRGATFVATMNAIAADTANNLPN
PANIHPSDKGYKLIAAEFLKVIPAGAAKSKLTVSDVTRTGAKLTWESAVDSKGVTQYR
VYRDDTVVGTVYGGETSYAISGLSPSKTYQFRIEAGDAAGNWSTGGPTASATTTKGSN
SPGGGGGAGALPADAFTVSDTGVTLKSGAYTSVQKTENGQFVTEITLDGARLAEVFQK
LKTLGSASRTITLEVDTKQGVTVVAPGQALLEGLKAVPDASLQIKTNTAGYHVPLNVV
PGDITEQLKAAKPGDVMVRFGIRVHPGSSVTAAKLQGDLYGFDVTAAAGTASRKLVIP
ANKAGVITLTLDGEIDEAQASLVGYDPDKGAIRFAPALFQEKEGKTTVTVARNVSPAY
GVVITVPAFTDLDGHWSSKDVELLAGKRVIEGTTDTTFEPESPMTRAQFATLLVRALG
VDPAVESASRFTDVTPGAWYGSSVSSAVYAGLIEGFEDGSFQPDASITRAQMATMLSR
ALKFADRKPSVSAALLDSFTDKGDIGEWAEAAVAEAVHAGIIQGMTDTTFAPAENATR
AQAAVMLKRMLLYIEYLN"
misc_feature 204509..206083
/locus_tag="PM3016_187"
/note="Zinc metalloprotease (elastase) [Amino acid
transport and metabolism]; Region: LasB; COG3227"
/db_xref="CDD:33040"
misc_feature 204638..204778
/locus_tag="PM3016_187"
/note="Fungalysin/Thermolysin Propeptide Motif; Region:
FTP; pfam07504"
/db_xref="CDD:203657"
misc_feature <204926..205069
/locus_tag="PM3016_187"
/note="Peptidase propeptide and YPEB domain; Region:
PepSY; pfam03413"
/db_xref="CDD:202622"
misc_feature 205316..206083
/locus_tag="PM3016_187"
/note="Peptidase M4 family includes thermolysin,
protealysin, aureolysin and neutral protease; Region:
M4_neutral_protease; cd09597"
/db_xref="CDD:189004"
misc_feature order(205472..205477,205553..205555,205562..205567,
205574..205576,205607..205609,205634..205636,
205709..205714,205811..205813)
/locus_tag="PM3016_187"
/note="active site"
/db_xref="CDD:189004"
misc_feature order(205562..205564,205574..205576,205634..205636)
/locus_tag="PM3016_187"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:189004"
misc_feature 206123..>206437
/locus_tag="PM3016_187"
/note="Putative glycoside hydrolase xylanase; Region:
Xylanase; pfam13201"
/db_xref="CDD:205382"
misc_feature 206966..207223
/locus_tag="PM3016_187"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature order(207146..207148,207188..207190)
/locus_tag="PM3016_187"
/note="Interdomain contacts; other site"
/db_xref="CDD:28945"
misc_feature order(207191..207193,207197..207202)
/locus_tag="PM3016_187"
/note="Cytokine receptor motif; other site"
/db_xref="CDD:28945"
misc_feature 207272..207922
/locus_tag="PM3016_187"
/note="SGNH_hydrolase, or GDSL_hydrolase, is a diverse
family of lipases and esterases. The tertiary fold of the
enzyme is substantially different from that of the
alpha/beta hydrolase family and unique among all known
hydrolases; its active site closely...; Region:
SGNH_hydrolase; cl01053"
/db_xref="CDD:207299"
misc_feature order(207293..207295,207413..207415,207545..207547,
207863..207865,207872..207874)
/locus_tag="PM3016_187"
/note="active site"
/db_xref="CDD:58496"
misc_feature order(207293..207295,207863..207865,207872..207874)
/locus_tag="PM3016_187"
/note="catalytic triad [active]"
/db_xref="CDD:58496"
misc_feature order(207293..207295,207413..207415,207545..207547)
/locus_tag="PM3016_187"
/note="oxyanion hole [active]"
/db_xref="CDD:58496"
misc_feature 207944..208153
/locus_tag="PM3016_187"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature order(208106..208108,208151..208153)
/locus_tag="PM3016_187"
/note="Interdomain contacts; other site"
/db_xref="CDD:28945"
misc_feature 208925..209053
/locus_tag="PM3016_187"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 209105..209236
/locus_tag="PM3016_187"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 209303..209437
/locus_tag="PM3016_187"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 209835..210788
/locus_tag="PM3016_188"
/db_xref="GeneID:11882159"
CDS 209835..210788
/locus_tag="PM3016_188"
/codon_start=1
/transl_table=11
/product="putative glucokinase"
/protein_id="YP_005310318.1"
/db_xref="GI:379718187"
/db_xref="GeneID:11882159"
/translation="MGDQVYVGVDLGGTAIKVGLCDEQGKLLQTYEGPTGTEHGADVV
LENIAQYVRKLVAESPYEWEQVAGVGAGIAGFMDIPEGFMKLSPNLGWRNVPVKKILE
EKLGVPVKIDNDANVAALGEAWSGAGAGIPNVVCYTLGTGVGGGIIIHSRIYQGSNGM
AGELGHMVVVPDLEAIECGCGKKGCLETVSSGTGIIRMAKEAVARGEHTSLALVENIM
AKDVFDAAKTGDETALRIINRAALYLGKSMAAVSVVLNPKRFIVGGGVSKAGDILFDA
IRKYYQEFTQETAQEGVDIVPAVLGNDAGVVGAAGLNLHSI"
misc_feature 209853..210770
/locus_tag="PM3016_188"
/note="ROK family protein (putative glucokinase); Region:
ROK_glcA_fam; TIGR00744"
/db_xref="CDD:162017"
misc_feature 209853..>210218
/locus_tag="PM3016_188"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature order(209862..209873,209877..209879,209883..209885,
210174..210176)
/locus_tag="PM3016_188"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene 210951..211850
/locus_tag="PM3016_189"
/db_xref="GeneID:11882160"
CDS 210951..211850
/locus_tag="PM3016_189"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310319.1"
/db_xref="GI:379718188"
/db_xref="GeneID:11882160"
/translation="MEENHSLGKLVIITGMSGAGKTIAVQSLEDLGFFCVDNLPPVLI
PKFAELIEQSKGRIGKVALVIDLRGREFFTSLSESLRYLNENYTLTYEILFLDATDSV
LVQRYKESRRKHPLAPTGAPLEGIQAERKLLEELKGLATQVIDTSNLKPVALKEKIAS
RFTNVEGSSISVNVISFGFKYGVPIDADLIFDVRFLPNPHYIDHLRPNTGQDPEVYEY
VMKWNETQEFLAKLLDMLQFLVPQYKKEGKSQVVVGIGCTGGKHRSVAIAEYLGKMMG
SSETETVRVSHRDSERDRVEVKR"
misc_feature 210975..211832
/locus_tag="PM3016_189"
/note="glmZ(sRNA)-inactivating NTPase; Provisional;
Region: PRK05416"
/db_xref="CDD:180064"
misc_feature 210975..211829
/locus_tag="PM3016_189"
/note="Predicted P-loop-containing kinase [General
function prediction only]; Region: COG1660"
/db_xref="CDD:31846"
gene 211847..212836
/locus_tag="PM3016_190"
/db_xref="GeneID:11882161"
CDS 211847..212836
/locus_tag="PM3016_190"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310320.1"
/db_xref="GI:379718189"
/db_xref="GeneID:11882161"
/translation="MTDALERENYIPRIVVIGGGTGLSVMLRGLKHKPMDITAVVTVA
DDGGSSGILRSELEIIPPGDIRNVLTALADVEPLLGKLLEYRFDKGNGLAGHSLGNLM
LAAMRDITGDFVTGVRELSRVLAVRGRVLPAADEAIVLRAEMMDGQVVEGESKIPKAG
GVIRRVMIEPRDVKALPEAVEALKTADAILVGPGSLYTSIMPNLLVPEIAETIVKSKA
LKMFICNVMTQPGETDDYKVSDHLKAIRDHVGHALFDYVIVNNGVIPDPVKRKYADKG
AEVVPLDLDAVTQEGYKVIADKLVLFQTYLRHDAEKLSQHIYQLVESWMFKKR"
misc_feature 211886..212803
/locus_tag="PM3016_190"
/note="family of mostly uncharacterized proteins similar
to B.subtilis YvcK; Region: YvcK_like; cd07187"
/db_xref="CDD:132873"
misc_feature 211886..212749
/locus_tag="PM3016_190"
/note="Uncharacterized protein family UPF0052; Region:
UPF0052; pfam01933"
/db_xref="CDD:202052"
misc_feature order(211901..211909,212426..212431,212441..212443,
212528..212533)
/locus_tag="PM3016_190"
/note="phosphate binding site [ion binding]; other site"
/db_xref="CDD:132873"
misc_feature order(211979..211981,211991..211993,212033..212035,
212042..212044,212144..212146)
/locus_tag="PM3016_190"
/note="putative substrate binding pocket [chemical
binding]; other site"
/db_xref="CDD:132873"
misc_feature order(212123..212125,212138..212140,212147..212152,
212159..212164,212168..212173,212201..212203,
212210..212215)
/locus_tag="PM3016_190"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132873"
gene 212843..213781
/locus_tag="PM3016_191"
/db_xref="GeneID:11882162"
CDS 212843..213781
/locus_tag="PM3016_191"
/codon_start=1
/transl_table=11
/product="WhiA protein"
/protein_id="YP_005310321.1"
/db_xref="GI:379718190"
/db_xref="GeneID:11882162"
/translation="MSFAAQTKKELTLMEADPCCEKAELSALIRMNGAVSLTSQKIIL
DISTENAAIARRIYSLLKKSYTVHIELLVRKKMRLKKNNVYIVRVPSQVQSILSDLQI
VSEGFLFASEIEPSLIAKDCCKRAYLRGAFLAGGSVNNPEGTSYHLEIYSMYEEHCQA
LCKLACEFGLNARCIERKKGFVLYIKEGEKIIDFLSLIGAHQALLRFEDVRIMKDMRN
SVNRLVNCETANLNKTIGAAVRQIDNIKLLQKELGLDNLPEKLREVAEIRLQHPDMNL
KEVGDLLKGKVSKSGVNHRLRKIDEMAEKLRKSQVL"
misc_feature 212843..213766
/locus_tag="PM3016_191"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG1481"
/db_xref="CDD:31670"
misc_feature 212894..213151
/locus_tag="PM3016_191"
/note="Sporulation Regulator WhiA N terminal; Region:
WhiA_N; pfam10298"
/db_xref="CDD:150898"
gene 214216..214485
/locus_tag="PM3016_192"
/db_xref="GeneID:11882163"
CDS 214216..214485
/locus_tag="PM3016_192"
/codon_start=1
/transl_table=11
/product="HPr-like protein crh"
/protein_id="YP_005310322.1"
/db_xref="GI:379718191"
/db_xref="GeneID:11882163"
/translation="MSRRPVVVKLKTGLHARPAALFVQEANKFSSEIFVEKDEKKVNA
KSIMGIMSLAISTGTEVHISAEGSDAEQAVNALVTLVSKEELENQ"
misc_feature 214231..214458
/locus_tag="PM3016_192"
/note="Histidine-containing phosphocarrier protein
(HPr)-like proteins. HPr is a central component of the
bacterial phosphoenolpyruvate sugar phosphotransferase
system (PTS). The PTS catalyses the phosphorylation of
sugar substrates during their translocation...; Region:
PTS-HPr_like; cd00367"
/db_xref="CDD:29444"
misc_feature 214231..214239
/locus_tag="PM3016_192"
/note="dimerization domain swap beta strand [polypeptide
binding]; other site"
/db_xref="CDD:29444"
misc_feature order(214255..214257,214261..214266,214270..214275,
214285..214287,214294..214296,214348..214359,
214366..214371)
/locus_tag="PM3016_192"
/note="regulatory protein interface [polypeptide binding];
other site"
/db_xref="CDD:29444"
misc_feature 214258..214260
/locus_tag="PM3016_192"
/note="active site"
/db_xref="CDD:29444"
misc_feature 214351..214353
/locus_tag="PM3016_192"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:29444"
gene 214690..216480
/locus_tag="PM3016_193"
/db_xref="GeneID:11882164"
CDS 214690..216480
/locus_tag="PM3016_193"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310323.1"
/db_xref="GI:379718192"
/db_xref="GeneID:11882164"
/translation="MKRIKKELALLLVVSLLMSIMWVSPGTAAEQEKNPLASASTTYV
LLYIDKAEAFLNGTQVTLDAPATIIKDKMYVPAKFLGDALGMKVEWNDATRQIEMETP
GYEIMLDIDNKSVWINGYWMAFDDVAAIVNGRLMIKLTWLADYMGAKYTYNNELRRVE
VLHVNAPQGLYDPNTSNSKPVAKFTFAKQTYKIGEPIKFVDLSYDPDAEGIAKFEWKG
KEDAYFQAGTYPITLTVWDSNGNKSEPYTRNLVISKETFLSAVEYPIYMKPVGSFIKT
NWSTLWSHFWELPELPKTATEVPGRTLLVSDSPEEFYEQGILYQDEVEGKVRLYADHI
NGTKEKVSFAILAKNMTDKPVTIKTTNKGEVWPSVYANLIGSEATVDFLLGDPLNETM
TIPAGQTFTYKQMPDFYPAQGVNLFYDLETDGKVQFSFIAAKDVSQKALALPKLAFSG
HVRGTFPVSEVKWNIDASSFTTPSRLILGDGIKDPFLPGYDPQRKAEVKNDGNYGVIY
KIHADKPRKMAIMILAKGGVFKGPIKINGDIRLIPESGVITAFDGMQILAKTTGKEES
LDIEFSPPAGSAFPVDLIFYPLDDRMDQQP"
misc_feature <214813..214980
/locus_tag="PM3016_193"
/note="Copper amine oxidase N-terminal domain; Region:
Cu_amine_oxidN1; pfam07833"
/db_xref="CDD:203776"
misc_feature 214909..215172
/locus_tag="PM3016_193"
/note="Copper amine oxidase N-terminal domain; Region:
Cu_amine_oxidN1; pfam07833"
/db_xref="CDD:203776"
gene 216661..217473
/locus_tag="PM3016_194"
/db_xref="GeneID:11882165"
CDS 216661..217473
/locus_tag="PM3016_194"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310324.1"
/db_xref="GI:379718193"
/db_xref="GeneID:11882165"
/translation="MSSWRTDPQRIWRWLGWSCIVIGVFYFPAFPWYLLGEVKEEEIG
HWALCSMVGGTVILLGARLYRKGGGQTKRLLLLVSLVGMAVLLLGQVPALYSWMIYQG
NLIRHWPVSPSVGFFLGVALHGWLVLLALAALTAACLSLAGRGHSEIRLSRREGLRFL
LGLGSLLALWWGWDAYQARGWIANTYPADGMEHVPVRTVVTVAWKGSYETMGMRVRYE
DSPEAAVPGASGATQYGMTFEPEGGFQPGRRVRIEVEAGRRTHVFRFTTDTK"
misc_feature 217204..217461
/locus_tag="PM3016_194"
/note="Bacterial Ig-like domain; Region: Big_5; cl01012"
/db_xref="CDD:207284"
gene complement(217565..218146)
/locus_tag="PM3016_195"
/db_xref="GeneID:11882166"
CDS complement(217565..218146)
/locus_tag="PM3016_195"
/codon_start=1
/transl_table=11
/product="protein ClpP1"
/protein_id="YP_005310325.1"
/db_xref="GI:379718194"
/db_xref="GeneID:11882166"
/translation="MSFIPMVVEPDARGERAYDIYSRLLKDRIIFLGSGINDVVANSI
IAQLLFLAASDPDKDIHLYINSPGGSITSGMAIYDTMQFIKPDVSTICVGMAASMGAF
LLAAGAPGKRFALPNSEVMIHQPLGGAEGQASDIEIRAKRILKMRDKLNTILSERTGQ
SFERIEKDTDRDNFMSAEEARAYGLIDKVIEKV"
misc_feature complement(217568..218110)
/locus_tag="PM3016_195"
/note="Clp protease; Region: CLP_protease; pfam00574"
/db_xref="CDD:201316"
misc_feature complement(217580..218092)
/locus_tag="PM3016_195"
/note="Caseinolytic protease (ClpP) is an ATP-dependent,
highly conserved serine protease; Region: S14_ClpP_2;
cd07017"
/db_xref="CDD:132928"
misc_feature complement(order(217625..217627,217631..217633,
217700..217702,217706..217708,217712..217714,
217721..217723,217763..217774,217790..217792,
217796..217798,217862..217864,217886..217888,
217898..217903,217910..217912,217919..217921,
217931..217933,217952..217954,217997..217999,
218006..218011,218018..218023,218048..218050,
218054..218056))
/locus_tag="PM3016_195"
/note="oligomer interface [polypeptide binding]; other
site"
/db_xref="CDD:132928"
misc_feature complement(order(217631..217633,217778..217780,
217853..217855))
/locus_tag="PM3016_195"
/note="active site residues [active]"
/db_xref="CDD:132928"
gene complement(218279..218350)
/locus_tag="PM3016_t12"
/db_xref="GeneID:11882167"
tRNA complement(218279..218350)
/locus_tag="PM3016_t12"
/product="tRNA-Arg"
/db_xref="GeneID:11882167"
gene 218612..219643
/locus_tag="PM3016_196"
/db_xref="GeneID:11882168"
CDS 218612..219643
/locus_tag="PM3016_196"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_005310326.1"
/db_xref="GI:379718195"
/db_xref="GeneID:11882168"
/translation="MREILDIQKQLLPDLMDTMKKRYTVLHHILVSGMIGRRTLAGML
NTTERVLRAEVDFLKEQGLVDVDASGIRISMAGRELLERIEPLVKDLFGLTELEEQLR
VHFGLKQVVIVPGDSDASPQVKKELGRAGASVLRKLVTENDVVAVTGGSTMAEVANHL
TAAPAMKGIWFVPARGGLGESLEMQANTIASTMAKKTGARYRLLHVPDHLGEEAYQSL
IQDTTISEIIQFIRQARMVIHGMGDAMVMARRRKVDRETTESLQREGALAEAFGYYFD
RSGRMLHRMPTIGLRLEDIHGMDTVIGVAGGRSKGEAIASVLKYGHEDVLVTDEAAAQ
EIIRTISSS"
misc_feature 218642..219625
/locus_tag="PM3016_196"
/note="Transcriptional regulator, contains sigma
factor-related N-terminal domain [Transcription]; Region:
DeoR; COG2390"
/db_xref="CDD:32535"
misc_feature 218876..219625
/locus_tag="PM3016_196"
/note="Putative sugar-binding domain; Region: Sugar-bind;
pfam04198"
/db_xref="CDD:202929"
gene 219735..220739
/locus_tag="PM3016_197"
/db_xref="GeneID:11882169"
CDS 219735..220739
/locus_tag="PM3016_197"
/codon_start=1
/transl_table=11
/product="protein GapA"
/protein_id="YP_005310327.1"
/db_xref="GI:379718196"
/db_xref="GeneID:11882169"
/translation="MVKVGINGFGRIGRNVFRAALGNPEVEIVAINDLTDVNTLAHLL
KYDTTHGKLNATVEATEGALIVNGKTVKVFAERNPENLPWGANGVEIVVESTGIFTAK
EKAELHLKGGAKKVIISAPATNEDITIVMGVNEDKYDASQHTIISNASCTTNCLAPFA
KVINDKFGIVKGMMTTVHSYTNDQSVLDLPHKDLRRARAAAENIIPSTTGAAKAVSLV
LPELKGKLNGMAMRVPTPNVSVTDLVVELSQNVTVDDVNNALKEAANGPLKGILNYSE
EPLVSSDYNGDPASSTIDALSTMVVGDNMVKVVSWYDNEWGYSNRVVDLANFIAKKGL
"
misc_feature 219735..220730
/locus_tag="PM3016_197"
/note="glyceraldehyde-3-phosphate dehydrogenase;
Validated; Region: PRK07729"
/db_xref="CDD:181094"
misc_feature 219738..220184
/locus_tag="PM3016_197"
/note="Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain; Region: Gp_dh_N; pfam00044"
/db_xref="CDD:200954"
misc_feature 220200..220670
/locus_tag="PM3016_197"
/note="Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain; Region: Gp_dh_C; pfam02800"
/db_xref="CDD:202402"
gene 221131..222315
/locus_tag="PM3016_198"
/db_xref="GeneID:11882170"
CDS 221131..222315
/locus_tag="PM3016_198"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310328.1"
/db_xref="GI:379718197"
/db_xref="GeneID:11882170"
/translation="MMNKKSVRDVEVGGKRVFVRVDFNVPLENGKITDDTRIRETVPT
IKYLTERGAKVILASHMGRPNGAVVEELRLTPVAARLSELLGQPVTKADEAVGAAVQA
QVAELKDGDVLLLENVRFYAGEEKNDAELAKQFAELADLYVNDAFGAAHRAHASTEGI
AHHLPAVGGLLMEKELDVLGRALNNPERPFTAIVGGAKVKDKIAVIEKLIEIADNIII
GGGLSYTFFKSKGLEIGKSLVDNDRLELVQEFERKAKEKGINFLLPVDVVVGDKFGAD
ANTKIVNIDEIPADWEAFDIGPKTREIYAKTIAESKLVVWNGPMGVFELEPFKNGTQA
VAEACAATAGYTVIGGGDSAAAVEKFHLGDKMDHISTGGGASLEFMEGKALPGVVALQ
DK"
misc_feature 221146..222279
/locus_tag="PM3016_198"
/note="Phosphoglycerate kinase; Region: PGK; pfam00162"
/db_xref="CDD:201047"
misc_feature 221149..222309
/locus_tag="PM3016_198"
/note="Phosphoglycerate kinase (PGK) is a monomeric enzyme
which catalyzes the transfer of the high-energy phosphate
group of 1,3-bisphosphoglycerate to ADP, forming ATP and
3-phosphoglycerate. This reaction represents the first of
the two substrate-level...; Region:
Phosphoglycerate_kinase; cd00318"
/db_xref="CDD:29400"
misc_feature order(221194..221196,221200..221202,221239..221241,
221308..221310,221485..221487)
/locus_tag="PM3016_198"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29400"
misc_feature order(221677..221688,222235..222243)
/locus_tag="PM3016_198"
/note="hinge regions; other site"
/db_xref="CDD:29400"
misc_feature order(221791..221793,222007..222009,222079..222081,
222085..222087,222091..222102,222181..222189)
/locus_tag="PM3016_198"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:29400"
misc_feature 222184..222186
/locus_tag="PM3016_198"
/note="catalytic site [active]"
/db_xref="CDD:29400"
gene 222331..223083
/locus_tag="PM3016_199"
/db_xref="GeneID:11882171"
CDS 222331..223083
/locus_tag="PM3016_199"
/codon_start=1
/transl_table=11
/product="TpiA protein"
/protein_id="YP_005310329.1"
/db_xref="GI:379718198"
/db_xref="GeneID:11882171"
/translation="MRKPIIAGNWKMFKTVQEAVSFVNEVKGKAEVEGVESVICSPFT
NLPALVEAVKGTTLKVGAQNLHFEDNGAYTGEISGVMLKDLGVEYVIIGHSERRAYFG
ETDEIVNKKVQAAFKHGLTPIVCVGEKLEEREANQTKDVCKVQTEGAFAGLSAEQAAQ
VVIAYEPIWAIGTGKSSTAADAQDVIGYIREVVSGLYGAETAAAVRIQYGGSVKPNNI
AEYMQQPDIDGALVGGASLEPASYIALIEGAK"
misc_feature 222337..223077
/locus_tag="PM3016_199"
/note="triosephosphate isomerase; Provisional; Region:
PRK14567"
/db_xref="CDD:173031"
misc_feature 222340..223071
/locus_tag="PM3016_199"
/note="Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually...; Region: TIM; cd00311"
/db_xref="CDD:73362"
misc_feature order(222355..222357,222361..222363,222610..222612,
222826..222828,222844..222846,222964..222966,
223021..223023,223027..223032)
/locus_tag="PM3016_199"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73362"
misc_feature order(222355..222357,222364..222366,222457..222465,
222469..222471,222478..222480,222517..222519,
222571..222573,222580..222585,222616..222621)
/locus_tag="PM3016_199"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73362"
misc_feature order(222361..222363,222610..222612,222826..222828)
/locus_tag="PM3016_199"
/note="catalytic triad [active]"
/db_xref="CDD:73362"
gene 223085..224629
/locus_tag="PM3016_200"
/db_xref="GeneID:11882172"
CDS 223085..224629
/locus_tag="PM3016_200"
/codon_start=1
/transl_table=11
/product="protein GpmI"
/protein_id="YP_005310330.1"
/db_xref="GI:379718199"
/db_xref="GeneID:11882172"
/translation="MARPKPVAVIILDGFGLRGDVQGNAVAQAKKPNYERYWNEFPHT
TLIACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQDLTRISKSIRDGEFYENETILGAI
RHAKDNGKKLHLYGLLSDGGVHSHIEHLFALLDVCKKENFEEVYIHAFLDGRDVAPDS
AAGYMERLLKKIADVGVGRIATVQGRYYAMDRDKRWERTEKSYRAMVYGDGPTFEDPM
NAIQESYIRSVYDEFVMPTVIVKPDHTPVGLVESGDSVVFFNFRPDRAIQLSQVFTNS
DFRGFDRGDKAPTDLYYVCLTLFSETVGGYVAYKPKNLDNTLGEVLAQNDLKQLRIAE
TEKYPHVTFFFSGGRDVELPGETRILIPSPKVATYDLQPEMSAYEVAAAAVAEIEAER
QDVIILNFANPDMVGHSGLLEPTIKAVEATDECLGKVVDAIIAKGGVALITADHGNAD
VVTNPDGSRNTAHTTNPVPFIVTDGRVTLRNDGILADIAPTVLDLLGVSKPAEMTGTT
LAASRS"
misc_feature 223085..224611
/locus_tag="PM3016_200"
/note="phosphoglyceromutase; Provisional; Region:
PRK05434"
/db_xref="CDD:180079"
misc_feature 223094..224611
/locus_tag="PM3016_200"
/note="Phosphoglyceromutase [Carbohydrate transport and
metabolism]; Region: GpmI; COG0696"
/db_xref="CDD:31040"
gene 224681..225973
/locus_tag="PM3016_201"
/db_xref="GeneID:11882173"
CDS 224681..225973
/locus_tag="PM3016_201"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310331.1"
/db_xref="GI:379718200"
/db_xref="GeneID:11882173"
/translation="MTVISNVYAREVLDSRGNPTVEVEVHLESGARGRAIVPSGASTG
AYEAVELRDGDKSRYLGKGVLKAVENVNDVIAPEIIGMNALDQVGIDKRMIELDGTPN
KGKLGANAILAVSMAVARAAAEALDIPLYLYLGGFNAKQLPVPMMNIINGGAHADNNV
DVQEFMVLPVGAPSFKEALRTGAEIFHSLRSVLKEKGLNTAVGDEGGFAPNLGSNEEA
IQTIITAIERAGYKPGVDVFLGMDVASTEFFKDGKYHLEGEGKSYTSAEWVDFLAAWV
DKYPIITIEDGCSEDDWEGWKLLTEKLGGKVQLVGDDLFVTNTERLSRGIEENIGNSI
LVKVNQIGSLTETFDAIEMAKRAGYTAVISHRSGESEDSTIADIAVATNAGQIKTGAP
SRTDRVAKYNQLLRIEDQLTDVAQYAGKSAFYNLKNFK"
misc_feature 224681..225961
/locus_tag="PM3016_201"
/note="enolase; Provisional; Region: eno; PRK00077"
/db_xref="CDD:178845"
misc_feature 224696..225910
/locus_tag="PM3016_201"
/note="Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The reaction
is facilitated by the presence of metal ions; Region:
enolase; cd03313"
/db_xref="CDD:48188"
misc_feature order(224702..224704,224708..224734,224744..224746,
224780..224782,225146..225154,225215..225220,
225227..225232,225239..225244,225281..225286,
225305..225307,225311..225313,225785..225793,
225860..225868,225872..225877,225884..225886,
225893..225898,225905..225907)
/locus_tag="PM3016_201"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48188"
misc_feature order(224804..224806,225404..225406,225533..225535,
225614..225616)
/locus_tag="PM3016_201"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:48188"
misc_feature order(225143..225145,225293..225295,225689..225691,
225773..225781,225842..225844)
/locus_tag="PM3016_201"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:48188"
gene 226284..226994
/locus_tag="PM3016_202"
/db_xref="GeneID:11882174"
CDS 226284..226994
/locus_tag="PM3016_202"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310332.1"
/db_xref="GI:379718201"
/db_xref="GeneID:11882174"
/translation="MNRWLKTIAFLVLSVFLSHFIPFNEFFRNLDTMIHEFGHAVVTL
LLQGQVMYIELFANHSGVTYSQISSPWSLIPIAMAGYMTASLFALFLFRVRAHDRERL
GLQVITLIAIAALILFVRGEFGVMWLIGFILLNVVMLAFMPAWIRDLYYLLIAFLTLE
ESVMGPFSLVLYALRDPSRAGDATNLSLVTPIPAVAWGAFFTLFALWCAVRAITLFLQ
GRKSEYRRTPAHYTRYED"
misc_feature 226305..226913
/locus_tag="PM3016_202"
/note="Peptidase M50B-like; Region: Peptidase_M50B;
pfam13398"
/db_xref="CDD:205576"
gene 227169..227408
/locus_tag="PM3016_203"
/db_xref="GeneID:11882175"
CDS 227169..227408
/locus_tag="PM3016_203"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310333.1"
/db_xref="GI:379718202"
/db_xref="GeneID:11882175"
/translation="MEVALKIILVIASLGLIAVVLLQPGKSAGLSGAISGGAEHLFGK
QKARGLELFLNRLTMGLAVAFFVLSLIVAYFVKAV"
misc_feature 227169..227399
/locus_tag="PM3016_203"
/note="preprotein translocase subunit SecG; Reviewed;
Region: secG; PRK06870"
/db_xref="CDD:180737"
gene 227503..228306
/locus_tag="PM3016_204"
/db_xref="GeneID:11882176"
CDS 227503..228306
/locus_tag="PM3016_204"
/codon_start=1
/transl_table=11
/product="carboxylesterase"
/protein_id="YP_005310334.1"
/db_xref="GI:379718203"
/db_xref="GeneID:11882176"
/translation="MTRQYRTTEPFHLKGTGERASTELLLIHGFTGSPSEFRRLGYYL
NDLGYTVRGILLPGHGTTPEDMIRTGLNDWSRHVTESFDTIRAQGGPDRRIVAVGHSM
GGLLALKLAMERPLAGVVSLAAPIFLASRKTVLAVLLQYFVKYVERRPTVPPHIIEEA
CSYSRTPIPCVVDLRKLLKHVKTSLNEVKAPLFIGQGGRDKLVLPRSAEYIYRHVSSA
FRQMAHYPSTSHAILLDEERERVYADIHRFLVTLEHIGTWEQTAAGYAP"
misc_feature 227512..228249
/locus_tag="PM3016_204"
/note="Esterase/lipase [General function prediction only];
Region: COG1647"
/db_xref="CDD:31833"
misc_feature 227584..228177
/locus_tag="PM3016_204"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
gene 228337..230367
/locus_tag="PM3016_205"
/db_xref="GeneID:11882177"
CDS 228337..230367
/locus_tag="PM3016_205"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310335.1"
/db_xref="GI:379718204"
/db_xref="GeneID:11882177"
/translation="MITKDILLDFMQEEAYKPLTYQELEQHFQLDSAQAFKDFLKLLN
ELENEGLIVRTRNDRYGVPERMNLLRGRLQAHAKGFGFLIPDDKEHPDVYIHANDMST
AMNGDIILVRITSRSPSGGRMEGEVVRVVSRANTRIVGLFQAHEEYAFVIPDDKRVVR
DIFIPKDSFGGAMDGHKVVVNIVSYPEGRAAAQGEVIEILGHKNDPGVDILSIIRKHG
LPEAFPDEVMEEASEAPDVITEEEIVSQGRRDLRNKRIVTIDGEDAKDLDDAVNVEVL
ENGNYVLGVHIADVSYYVRENSALDQEAYSRGCSVYLVDRVIPMLPHRLSNGICSLNP
RVDRLTMSCEMEFDAQANVVRHDVFTSVIRTSERMTYKNVRNLLKGEAEPEVQEKYAY
LMDDFRRMEDLAMRLRNKRMRRGAIDFDFQESKILVDESGKPTDIVKRERSIAEMIIE
EFMLAANETVAEHFHWLKVPFLYRIHEDPDAEKLQHFLEFITNFGYVVRGKGNTIHPK
ALQSLLEEIKGTKEETVISTVMLRSMKQAKYDANSMGHYGLAAEFYSHFTSPIRRYPD
LVIHRVMREVLEGGGTGLTDKRHEYLTSRMDDIAKQSSERERVAVDAERETEALKKAE
FMLDKVGEEFTGIISSVTSFGMFIGWRIRWKVSSVSRISQTTTTTSMMRSTR"
misc_feature 228337..230280
/locus_tag="PM3016_205"
/note="ribonuclease R; Region: RNase_R; TIGR02063"
/db_xref="CDD:200153"
misc_feature 228547..>228678
/locus_tag="PM3016_205"
/note="Ribonuclease B OB domain; Region: OB_RNB;
pfam08206"
/db_xref="CDD:203875"
misc_feature 228754..228933
/locus_tag="PM3016_205"
/note="Ribonuclease B OB domain; Region: OB_RNB;
pfam08206"
/db_xref="CDD:203875"
misc_feature 229078..230067
/locus_tag="PM3016_205"
/note="RNB domain; Region: RNB; pfam00773"
/db_xref="CDD:201436"
misc_feature 230224..>230280
/locus_tag="PM3016_205"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(230251..230253,230275..230277)
/locus_tag="PM3016_205"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
gene 230970..231455
/locus_tag="PM3016_206"
/db_xref="GeneID:11882178"
CDS 230970..231455
/locus_tag="PM3016_206"
/codon_start=1
/transl_table=11
/product="protein SmpB"
/protein_id="YP_005310336.1"
/db_xref="GI:379718205"
/db_xref="GeneID:11882178"
/translation="MAQKNPNEAKLLAQNKKASHDILSKYTYECGLVLTGTEIKSLRL
GKANIGDAFATIRNGEAFIHNMHISPFAQGNRFNPEDPTRARKLLLRKEQIHKLLGQS
KQEGYTIVPLKVYVRNGYAKLLIGLGRGKKQYDKRESAAKKDAQREIARALREKQKVA
R"
misc_feature 231012..231362
/locus_tag="PM3016_206"
/note="Small protein B (SmpB) is a component of the
trans-translation system in prokaryotes for releasing
stalled ribosome from damaged messenger RNAs; Region:
SmpB; cd09294"
/db_xref="CDD:187755"
misc_feature order(231054..231071,231075..231080,231084..231089,
231096..231098,231147..231149,231234..231251,
231333..231335)
/locus_tag="PM3016_206"
/note="SmpB-tmRNA interface; other site"
/db_xref="CDD:187755"
gene 232145..232804
/locus_tag="PM3016_207"
/db_xref="GeneID:11882179"
CDS 232145..232804
/locus_tag="PM3016_207"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310337.1"
/db_xref="GI:379718206"
/db_xref="GeneID:11882179"
/translation="MAKFNGETETKDPYVRVTFEALLEAVLPVTYRTPPGTGSDLIPV
PGGVELKLHEYLIRELDHSQFQPVNAPDGLPPLSRSTAQMLDLGAEQYIRRGLALPLT
EGFPGGGQFTRLAPIDRLLTLELIDRLEIPLGELSLPFKNNPGLVQTMVNSFTQLPYF
GYYCEWYGYGTTRFAPPADRRLQFVPPGWQLAGYPGPSFGYREFRGFLLTYPACQGGS
Q"
gene 232801..234501
/locus_tag="PM3016_208"
/db_xref="GeneID:11882180"
CDS 232801..234501
/locus_tag="PM3016_208"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310338.1"
/db_xref="GI:379718207"
/db_xref="GeneID:11882180"
/translation="MRDPDVIVIGSGGGGAVMAKELGEMGLQVLVLEAGPWYGHSGWP
EPNQERGAKSGSDPGELNVSLFKEQYSKLEGDMNEQITGKLRWGPADRNRPPWFRNLT
ERGFVWQNSGVGGTTQSYLANCPRAFPVRVDGVWPISYRELVPYYERVEATLPVEFAP
VTAKEELFFFGAQKAGWELIPTLNVTTPGYRPQPNAILPPNRHLTDPAYSLEQLSWME
GCTLAGHCVNGCPHGPSVDKIAKRSTNVSYIPLALRTGRVTVRPNTFVTRILTEAHPS
EGLRATGVRIRDTWTGEIEELRADVIVMAAGAIESPRLWLNSGLPANRWVGRGLSNHY
FGWVTGMFDERDLLRILGSPEINPFVGHTSGGRLDIPGLGSLMVTGMSPGLTASMSYG
FSQNGYSFLHPAAAETGDLVGRLVGAEFQYWMENYRRTLSIVIFTDDEPDYRNGITVD
AAVQDEHGPVPKIRYVPGAREERSRMELAKIAVDILRKAGARKVHRSDWPGSLLIHME
STMRMGFVVNENCEAYQVRRLYITDNSVHFNALGGANPTLTTQALATRAAEKLVQTYF
"
misc_feature 232801..234438
/locus_tag="PM3016_208"
/note="Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism]; Region: BetA;
COG2303"
/db_xref="CDD:32458"
misc_feature 234121..234438
/locus_tag="PM3016_208"
/note="GMC oxidoreductase; Region: GMC_oxred_C; pfam05199"
/db_xref="CDD:203202"
gene 234581..235108
/locus_tag="PM3016_209"
/db_xref="GeneID:11882181"
CDS 234581..235108
/locus_tag="PM3016_209"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310339.1"
/db_xref="GI:379718208"
/db_xref="GeneID:11882181"
/translation="MNLFEVFKDAIKPFLDGEKPPLNVGEVMNLWFYTTATEQTMRGE
QVSYNIVQEPELKEMLRVVIHDVHGPIMEEVTEFMRAEGVPLPSMTPDKTIGDFRELP
EGAHLSDEEVANLLSFNIVLGINYACRGMTEAVRPDVAAMFVKFQMRKMTYAVSLREF
LMRKGWLKVPPVYKP"
misc_feature 234623..235093
/locus_tag="PM3016_209"
/note="Protein of unknown function (DUF3231); Region:
DUF3231; pfam11553"
/db_xref="CDD:151989"
gene complement(235198..235443)
/locus_tag="PM3016_210"
/db_xref="GeneID:11882182"
CDS complement(235198..235443)
/locus_tag="PM3016_210"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310340.1"
/db_xref="GI:379718209"
/db_xref="GeneID:11882182"
/translation="MSGDWFYGCIFPLYALLGVPSGGRIRMSVRIALPGMFLDIFSLA
FHSYVFPSLPPEGIPLLAGWLLWAYGLILATGRLPKS"
gene complement(235476..236063)
/locus_tag="PM3016_211"
/db_xref="GeneID:11882183"
CDS complement(235476..236063)
/locus_tag="PM3016_211"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_005310341.1"
/db_xref="GI:379718210"
/db_xref="GeneID:11882183"
/translation="MARPNLISKAELLQAARICLAEKGIEKTTLKAIADEAKVSQGTV
YYHFRTKDQLMLELTQSLCAASWQSQNQHKESGSIEEALQGAKDRCGYDSFYHRLFFT
SMAASFQSEPNRERLGAMLREENEQLASLLCSRWNGSPVDGIPLEHWGVLINAMVDGL
AVQALLDKDFPKDAVFNSFGRLLHAISGGVNNLEL"
misc_feature complement(235482..236063)
/locus_tag="PM3016_211"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature complement(235890..236030)
/locus_tag="PM3016_211"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
misc_feature complement(235557..>235772)
/locus_tag="PM3016_211"
/note="Bacterial transcriptional repressor; Region:
TetR_C_6; cl07106"
/db_xref="CDD:208611"
gene 236620..237744
/locus_tag="PM3016_212"
/db_xref="GeneID:11882184"
CDS 236620..237744
/locus_tag="PM3016_212"
/codon_start=1
/transl_table=11
/product="WD40 domain-containing protein"
/protein_id="YP_005310342.1"
/db_xref="GI:379718211"
/db_xref="GeneID:11882184"
/translation="MTYPPDVEQAPGRQIVLIRDRSTGGCERVKTPDETGSVLYFDMT
PDARYIAYTYADTVISGQSKVYLYDRTTETLETVNGTTGRKEFRMEEGDYVSISADGR
YVAFDTDAEGLVPGDTNGERDVYLFDRLGSGSRLERISVPLEEGRNHDSRHPSISSDG
NRIVLVSQAKLTDLDEPDGTESLYLYDRQAAAGTYPKRIAEGETPSISGDGRYVAFTT
FRDDLVQGEDTNNRDDIYVYDVTDAVFHRVSKEADGTQHTGDSRHPSISRSGAYVAYE
VDSSDNGDESELYVAARQGAASARIEVPEASVSLLPSGKRPAVGDTGASVTFFSSYLE
RIGGVEVRLWDYFVAASGASPSLASGIAPEASDLVGQNQR"
misc_feature <236665..237273
/locus_tag="PM3016_212"
/note="Periplasmic component of the Tol biopolymer
transport system [Intracellular trafficking and
secretion]; Region: TolB; COG0823"
/db_xref="CDD:31165"
misc_feature <237079..>237522
/locus_tag="PM3016_212"
/note="Periplasmic component of the Tol biopolymer
transport system [Intracellular trafficking and
secretion]; Region: TolB; COG0823"
/db_xref="CDD:31165"
gene complement(237752..238582)
/locus_tag="PM3016_213"
/db_xref="GeneID:11882185"
CDS complement(237752..238582)
/locus_tag="PM3016_213"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_005310343.1"
/db_xref="GI:379718212"
/db_xref="GeneID:11882185"
/translation="MNANIPWPSMGVLRMQEGSRRFRLTRHDPSEELAFFVKHYWVVR
WDVSDGATYPQEVLPNPCVNLVVEREKSAIFGPSKQKFTYPLHGRGCVFGVKFKPGGF
HPFSRRPAAHLADQPLAIGSVFGVNAGELEDAMLSEPEESRMIELAEALLRPKLPPRD
EQVPFIGRIVDRIREDRSLTRVDQAADAFGLSVRGLQRLFHQYVGVTPKWVIQLYRLH
NAAEAMEQSGPPDSLELSMELGYHDQAHFIKDFKAIVGRTPEQHAKGRIGREEAEKSS
"
misc_feature complement(237800..238027)
/locus_tag="PM3016_213"
/note="Helix-turn-helix domain; Region: HTH_18; pfam12833"
/db_xref="CDD:205096"
misc_feature complement(237806..>237883)
/locus_tag="PM3016_213"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 238712..239170
/locus_tag="PM3016_214"
/db_xref="GeneID:11882186"
CDS 238712..239170
/locus_tag="PM3016_214"
/codon_start=1
/transl_table=11
/product="Activator of Hsp90 ATPase 1 family protein"
/protein_id="YP_005310344.1"
/db_xref="GI:379718213"
/db_xref="GeneID:11882186"
/translation="MDREALKYEFYIGAGVEEVWNAFISPEGTRKTFFGCVLQSTFEQ
GAPFQYVGPGQEGDETVHVYGTILNYEPLKEISYLEHPGASYQDNHAELESRVTFTLD
TVGACTKLTLVNDGWTPGHPSYENAKSHWWMILSNIKTVAETGKALDFGW"
misc_feature 238733..239143
/locus_tag="PM3016_214"
/note="Putative hydrophobic ligand-binding SRPBCC domain
of an uncharacterized subgroup of CalC- and Aha1-like
proteins; some contain an N-terminal GntR family winged
HTH DNA-binding domain; Region:
SRPBCC_CalC_Aha1-like_GntR-HTH; cd08893"
/db_xref="CDD:176902"
misc_feature order(238733..238735,238739..238741,238766..238774,
238778..238783,238796..238798,238823..238825,
238844..238846,238850..238852,238856..238858,
238862..238864,238895..238897,238901..238906,
238910..238912,238919..238921,238937..238939,
238943..238948,238997..239002,239006..239008,
239012..239014,239042..239044,239048..239050,
239054..239056,239060..239062,239078..239104,
239108..239116,239123..239125)
/locus_tag="PM3016_214"
/note="putative hydrophobic ligand binding site [chemical
binding]; other site"
/db_xref="CDD:176902"
gene 239450..239623
/locus_tag="PM3016_215"
/db_xref="GeneID:11882187"
CDS 239450..239623
/locus_tag="PM3016_215"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310345.1"
/db_xref="GI:379718214"
/db_xref="GeneID:11882187"
/translation="MTYTELLERRSEILKRHLGSLILKDNQYGLNERESCMFRDLVKE
LHRNKYEWNESMK"
gene 239848..240942
/locus_tag="PM3016_216"
/db_xref="GeneID:11882188"
CDS 239848..240942
/locus_tag="PM3016_216"
/codon_start=1
/transl_table=11
/product="sodium-dependent phosphate transporter"
/protein_id="YP_005310346.1"
/db_xref="GI:379718215"
/db_xref="GeneID:11882188"
/translation="MVMWVTWIAIGIALFFAANIGASGAAASMGVAYGSGAVSRKMAA
LSLVAVGVFLGAYLGGGEVVKTLGSGIIPPKLLTVELVIIILLSATLTLFGANLLGIP
LSTSEVTVGAVVGVGIAYETVFVQKLLVIVSFWVILPVVAFTLAWGMGHVIRRLERRD
ARWRGEGEGWWTKGLMWLVLAAGFTEAFSAGMNNVANAVGPLVGAGLLGTEEGIFWGG
LFVALGALVLGGKVLETNGKKITRMSLLQGTAISGTGGTLVIISSLYGIPVPLTQITT
TAILGMGSAEHGFRLWQKGIVLKILKVWLVSPLLSMTVSFTLVKLFIEPAPYLIVVMV
AVLISLIGLKSLYDTEQAERRAMNEEGAGI"
misc_feature 239965..240792
/locus_tag="PM3016_216"
/note="Phosphate transporter family; Region: PHO4;
pfam01384"
/db_xref="CDD:201762"
gene complement(241014..242303)
/locus_tag="PM3016_217"
/db_xref="GeneID:11882189"
CDS complement(241014..242303)
/locus_tag="PM3016_217"
/codon_start=1
/transl_table=11
/product="amino acid permease"
/protein_id="YP_005310347.1"
/db_xref="GI:379718216"
/db_xref="GeneID:11882189"
/translation="MNSSGGLQRTIGLPQAVALYIGAVLGSGILIVPGLAAEIAGPAS
LLAWGLMALLIFPLAWSMGLLSAQYPNAGGVSHFVTLAYGRRAGTLTGWFFLMSVPIG
APVAALTGAGYMTAALGWGEQAKIAIAAGMLVLALLVNYVGMKIAGQLQLIVVLAILA
VLILAIAGAQPHIQAGNLTPFLPHGWVSVGQAAAILFWCFIGWEAVSHLSEEFQEPKK
AAIQGVTAAALIVGVLYFLTAFAVVGTGSYRGAASDASLVWVILRLLGPAGAWISGIT
GIFICTATIIAYAGASSRLAYALAREGEAPRWMGGLSARFGTPTGGLGFLAITAAAVL
TLYGSGAVSLAELIQFPNATFILTYLGGCAAGMKLLRGSRWGKRVSTLSFACTLTVFP
FVGWAMLYPIVIVLVYWLVSRVRAAKASRSRSASQAS"
misc_feature complement(241074..242273)
/locus_tag="PM3016_217"
/note="putative transporter; Provisional; Region:
PRK11021"
/db_xref="CDD:182905"
gene 242422..243327
/locus_tag="PM3016_218"
/db_xref="GeneID:11882190"
CDS 242422..243327
/locus_tag="PM3016_218"
/codon_start=1
/transl_table=11
/product="transcriptional regulator YwqM"
/protein_id="YP_005310348.1"
/db_xref="GI:379718217"
/db_xref="GeneID:11882190"
/translation="MESRYLFTFLVVVEMGSFTRAAAHLGYAQSSVTAQIQALEAELE
APLFDRIGKKILITDAGRRLLPYAQEISRLHTLAKDALRSDAELAGTLAIGAPESLAA
FRLPEILREYRERYPKVKITLKPGVCWTLRDLTRSGELDLTFLLQPETEDKDLFIRTL
VQERMALVAPPAHPLAASQRVEPLDLQGETILHTEPGCTYRAMFEQHLHHHGVFPDPD
LEFYSIETIKNCVMSGLGLSFLPWITVRNEIREGKLAGLAWDDRPQRPATQIAYHTKK
WRSPALHEFLALVDKHAERWRKELE"
misc_feature 242422..243318
/locus_tag="PM3016_218"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature 242431..242607
/locus_tag="PM3016_218"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature 242692..243288
/locus_tag="PM3016_218"
/note="The substrate binding domain of LysR-type
transcriptional regulators (LTTRs), a member of the type 2
periplasmic binding fold protein superfamily; Region:
PBP2_LTTR_substrate; cd05466"
/db_xref="CDD:176102"
misc_feature order(242737..242742,242746..242751,242758..242760,
242770..242772,242776..242796,243073..243090,
243106..243111,243115..243120)
/locus_tag="PM3016_218"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 243490..244368
/locus_tag="PM3016_219"
/db_xref="GeneID:11882191"
CDS 243490..244368
/locus_tag="PM3016_219"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310349.1"
/db_xref="GI:379718218"
/db_xref="GeneID:11882191"
/translation="MLVTNKNSAWVTLLLGSSLLLSACGQSSAPAASGSAQKETAAKP
AEAVPAADVQKEAIEKYRQYVIGQTDEFVKAADAFTKAVKAGDIETAKSLYAPSRMHF
ERIEPIAESLGDFDPWIDAREGDVPDNEWRGYHRLEKALWETKSVAGQDKVADQLLQD
VKQLRVKVESVEIDTAMLVTGAVELLNEVSSSKVTGEEERYSHTDLYDFAANVEGAHE
IYQVLKPAVENKDAALAGEINSRFKELDQALQPYRKDKGYVSYTELTPEQTKKLSQAV
DALAEPLSKMGTVIGG"
misc_feature 243658..244347
/locus_tag="PM3016_219"
/note="Imelysin; Region: Peptidase_M75; pfam09375"
/db_xref="CDD:204217"
gene 244372..245649
/locus_tag="PM3016_220"
/db_xref="GeneID:11882192"
CDS 244372..245649
/locus_tag="PM3016_220"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310350.1"
/db_xref="GI:379718219"
/db_xref="GeneID:11882192"
/translation="MSGSSKKDLFQKSFSRRDALKLAGAGGIGLLLGVGGIKAGALGE
GMLAPAVPADGAKGKVVPFYGEHQAGIITPMQDFICMGAFDLTAKNLGEVRELFTRWT
EAAARMSQGQGAGDNNSSPLVPPDDTGEAEGLNPSRTTITFGLGASFFDERYGLSGQR
PAALVDLPRFKGDALLSEWSGGDVAVQVCADDPQVAFHAIRNLIRIARGKAVLRWLQE
GFQRTGAADPQGSTPRNLLGFKDGTNNPDVQDAAAAKEIVWTEGGDHPSWMTGGSYLV
MRRIRMRIEVWDRTTLGEQEATFGRHRATGAPLGGRTEFEPLDLAKKDAAGKPMIPAD
SHVALANMEGKVKILRRGYSYSNGIDLKTGQLDAGLLFLCYNRDPREQFIPMQMRLAA
ADKLNEYIVHVGSGLYACLPGVKPGGYIGSTLF"
misc_feature 244573..245616
/locus_tag="PM3016_220"
/note="Dyp-type peroxidase family; Region: Dyp_perox;
cl01067"
/db_xref="CDD:194026"
gene 245670..247463
/locus_tag="PM3016_221"
/db_xref="GeneID:11882193"
CDS 245670..247463
/locus_tag="PM3016_221"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310351.1"
/db_xref="GI:379718220"
/db_xref="GeneID:11882193"
/translation="MRRCLLWLCMAALLLMPVSPLLAAEADGTAAGRSQQLIALASDA
LIGAGDRDWPAVSAAVGKLKAEWTALSPAASAEFKLVDEAFEAADRELGKPQKDDKAA
YQAVSALVKAVDGYVSAGSGGAAMEKAHKQVQTALVPLLQKSLAAVKAGNSAQAKAAY
TSFVSGWGKAESVIRQDNPKLYGSMEVKISGVRIALNTEPMDTAKAEGKLQELIGSLE
AYASGSPDTAAEAAAADETLRSIGDLIALLDTVAADVQRQRSTEAASGMDRFISAWPA
LEGAVSTRSPEAYNRVETKMVEVPTLLLSTPPQWEQAAAALGALRSELEPYAEASSYT
AWDAGVIIFREGLEAILIISALVAFLNRSGNRDKRGWIWSGAAAGLVFSVVMALVLTL
MLSRLTAGGSRELIEGITGLIAVIFMVSIGAWLHSKSNLKSWNRFVEHSIGSSLAKGT
LWSLFFTSFLSVMREGAETLIFYMGMASSIAAGDMLLGIGTALVLLAVIGFVIIRMSG
RIPVRPFFLAASFLLYYLAFKFVGVSLHALQVTGHLSAHTSDGLVNLSWLGMYNSWET
TIPQLGVLAVIVWNAVHTERRTGENSAQRAA"
misc_feature 246399..247415
/locus_tag="PM3016_221"
/note="High-affinity Fe2+/Pb2+ permease [Inorganic ion
transport and metabolism]; Region: FTR1; COG0672"
/db_xref="CDD:31016"
gene complement(247705..250953)
/locus_tag="PM3016_222"
/db_xref="GeneID:11882194"
CDS complement(247705..250953)
/locus_tag="PM3016_222"
/codon_start=1
/transl_table=11
/product="putative extracellular protease"
/protein_id="YP_005310352.1"
/db_xref="GI:379718221"
/db_xref="GeneID:11882194"
/translation="MENYSFLKKISAASLAFAVLSTTAFTQAFAAPSDSSVIHRLTPE
GSPSKTLPNGHTVYISPKLKNKTKSGEEVRVIVQLSGQPVAVGKYAAKQGISSFTNES
AESTIAQEQNTFVSGAKNKGIGMKVNYRYNTVLNGLEISVPANQIPELAKLPGVKSIH
ESATYYPIPVSSPVSMETDNPNYDIAPLKQIGVDAAWVKGYTGKGLKVGVIDTGVDYL
HPDLKGAYKGGYDSFEQDADPYEEPPLSPAEDPYGTGFEGTSHGTHVSGTIVGRAANP
TSDIVQKGVAYEADLYVYKVLGRNPETGRASGSSAQVIDGIERAVKDGMNVINLSLGS
DAEKDVNSPDVVAINNAVLGGVIAVIANGNAADDGPYYYSLGSPATSQLAISVGAVTS
PTNHYTATVTEAAYAAGSTVIGAAYAAYDLNVMAWETGQENFASLIGTEPTDVVYAGL
GAEADFEGKDVAGKVVLVSRGSFAFVDKISSAKARGAKAVIIFNGNAAAGDAAAADLS
ESVPGRDGHIGSAAFLGDGFDFVPTFDMKGTEGRALARKALASPNHTLKLAFGAEYPK
TSSAGDTMATFSSRGPNVDADLSIKPDVVAPGVSVLSTWPAFGKFDPGASYQRAYNRI
NGTSMATPHVAGLALLLKQQHPTWSTSDIRAALANTADSIHDENGTLYDVYSQGAGRA
NVANAIQTPALIKTIEPITILDKYWNPKAVTNYGSSVSFGLVQPGKTVQKELEIKNLS
KQPLSYSAKVVLHPSVTSDPTAPTATPDVNNLNVQLIGIPASGKLSPAPGTAKRFYLS
VTPKSGAAQGVYEGEVVMESAGLPTLHLPFAVHVGSEKPSTGFGIQELEQTESVIYPG
NSEDLPVSTDLSFRLSAKDINVVDLWAVGLDDVPIGIIDSLSNLSGSGQPRLLEPGVY
SFEGIDGSYVDGEQDADGSLVVKHLEAGTYKLLLRAQLVDSLGNPLGGSVYEAYSSLR
LSDSESDRVARAKDAFKAKVVNTRIIGQPVLQLPVTEGIVYKVTNSTSKAYIDNSGLL
KLIPSSGIVNVELTVTISSAKDPSIKTTVKVPVVLSKVSVSQKTTSGSAAAQ"
misc_feature complement(250456..250662)
/locus_tag="PM3016_222"
/note="Peptidase inhibitor I9; Region: Inhibitor_I9;
pfam05922"
/db_xref="CDD:203351"
misc_feature complement(<249772..250347)
/locus_tag="PM3016_222"
/note="Peptidase S8 family domain in Vpr-like proteins;
Region: Peptidases_S8_subtilisin_Vpr-like; cd07474"
/db_xref="CDD:173800"
misc_feature complement(order(249862..249864,249955..249963,
250171..250173,250318..250320))
/locus_tag="PM3016_222"
/note="putative active site [active]"
/db_xref="CDD:173800"
misc_feature complement(order(250171..250173,250318..250320))
/locus_tag="PM3016_222"
/note="catalytic triad [active]"
/db_xref="CDD:173800"
misc_feature complement(249208..249624)
/locus_tag="PM3016_222"
/note="PA_C5a_like: Protease-associated domain containing
proteins like Streptococcus pyogenes C5a peptidase. This
group contains various PA domain-containing proteins
similar to S. pyogenes C5a, including, i) Vpr, a minor
extracellular serine protease from...; Region:
PA_C5a_like; cd02133"
/db_xref="CDD:80355"
misc_feature complement(249538..249546)
/locus_tag="PM3016_222"
/note="putative integrin binding motif; other site"
/db_xref="CDD:80355"
misc_feature complement(order(249388..249390,249394..249405,
249526..249531))
/locus_tag="PM3016_222"
/note="PA/protease domain interface [polypeptide binding];
other site"
/db_xref="CDD:80355"
misc_feature complement(248893..>249255)
/locus_tag="PM3016_222"
/note="Peptidase S8 family domain in Vpr-like proteins;
Region: Peptidases_S8_subtilisin_Vpr-like; cd07474"
/db_xref="CDD:173800"
gene 251992..253740
/locus_tag="PM3016_223"
/db_xref="GeneID:11882195"
CDS 251992..253740
/locus_tag="PM3016_223"
/codon_start=1
/transl_table=11
/product="fibronectin type III domain-containing protein"
/protein_id="YP_005310353.1"
/db_xref="GI:379718222"
/db_xref="GeneID:11882195"
/translation="MMYRAIQARRSTGFRTLTFLLIAALLLSLTPLTGLAADRGAWAP
GVAYQTNDTASYSGKIYTVLQSHTSQIGWEPPNVPALWKETAGGGTGSDTQAPAAPAG
LRVNGTTSSSVSLSWTAATDNVAVTGYDIYRGSVLAGSVSGSTLSFTNTGLAAGTYSF
TVKAKDAAGNVSAASGAVSATVSGSGGSDTQAPSVPAGLKVTGTTSSSVSLSWTASTD
NTGVTGYDVYRGTILAASVSGTTAIVTGLAASTSYTFTVKAKDAAGNVSAASSSISAT
TAASAGGTLPKRLLTGYWHNFINNSANLKLSQVPAAYDIIAVSFGEMDLANPGGVTFT
VDPSLSSALGGYTDADLIHDIKAKQAQGKKVILSLGGEKGNVNLSSASPNVSNFVNSV
SGLITKFGFDGIDIDLEHGFNVANLTSGVRQIQQKFGSGFILTMAPQTIDMQSQSSTY
LQFYANVKDITTVINTQYYNSGCMLGRDGKCYSQGTVDFLTALSDVALQWVSDSQLGL
GLPAVPSAAGGGYVSPAVVNDALNCLATGNSCGSYKPAQKYPNIRGAMTWSINWDSTN
GYNFANTVRPFLNSMP"
misc_feature 252109..252237
/locus_tag="PM3016_223"
/note="Carbohydrate binding domain; Region: CBM_5_12;
pfam02839"
/db_xref="CDD:202425"
misc_feature 252280..252489
/locus_tag="PM3016_223"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature order(252280..252282,252454..252456)
/locus_tag="PM3016_223"
/note="Interdomain contacts; other site"
/db_xref="CDD:28945"
misc_feature 252853..253722
/locus_tag="PM3016_223"
/note="GH18 domain of Chitinase D (ChiD). ChiD, a
chitinase found in Bacillus circulans, hydrolyzes the
1,4-beta-linkages of N-acetylglucosamine in chitin and
chitodextrins. The domain architecture of ChiD includes a
catalytic glycosyl hydrolase family 18; Region:
GH18_chitinase_D-like; cd02871"
/db_xref="CDD:119350"
misc_feature 252865..253680
/locus_tag="PM3016_223"
/note="Glycosyl hydrolases family 18; Region:
Glyco_hydro_18; pfam00704"
/db_xref="CDD:201406"
misc_feature order(252868..252870,252949..252951,253210..253212,
253216..253218,253390..253392,253396..253398,
253663..253665)
/locus_tag="PM3016_223"
/note="putative active site [active]"
/db_xref="CDD:119350"
gene 253882..254526
/locus_tag="PM3016_224"
/db_xref="GeneID:11882196"
CDS 253882..254526
/locus_tag="PM3016_224"
/codon_start=1
/transl_table=11
/product="Pentapeptide repeat-containing protein"
/protein_id="YP_005310354.1"
/db_xref="GI:379718223"
/db_xref="GeneID:11882196"
/translation="MASYLVSQTGVHTMFQYIDQEYTEVDFSQRDLREGELRGCVFIR
CRFRGAQLDEIETTGCQFVECDFTGATFNASMHERSAFTNCKFGGANLFVSKFRECKM
IGSDFAKAQLDGITIEQGDWSYTNLRQTNLGKQDLRNVKFMEADLSECNLEKANLREA
DLTRALLGRARLSGSDLRGAKMDGVDFRAMDVKGARMDLAQAAALARAYGARID"
misc_feature 253954..254229
/locus_tag="PM3016_224"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature 254164..254385
/locus_tag="PM3016_224"
/note="Pentapeptide repeats (9 copies); Region:
Pentapeptide_4; pfam13599"
/db_xref="CDD:205777"
misc_feature 254248..254358
/locus_tag="PM3016_224"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
misc_feature 254314..254433
/locus_tag="PM3016_224"
/note="Pentapeptide repeats (8 copies); Region:
Pentapeptide; pfam00805"
/db_xref="CDD:109845"
gene complement(254548..254637)
/locus_tag="PM3016_225"
/db_xref="GeneID:11882197"
CDS complement(254548..254637)
/locus_tag="PM3016_225"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310355.1"
/db_xref="GI:379718224"
/db_xref="GeneID:11882197"
/translation="MMFDLEKVRWLLFVLFAVVLILKQKHTQL"
gene 255207..256731
/locus_tag="PM3016_r7"
/db_xref="GeneID:11882198"
rRNA 255207..256731
/locus_tag="PM3016_r7"
/product="16S ribosomal RNA"
/db_xref="GeneID:11882198"
gene 257019..259946
/locus_tag="PM3016_r8"
/db_xref="GeneID:11882199"
rRNA 257019..259946
/locus_tag="PM3016_r8"
/product="23S ribosomal RNA"
/db_xref="GeneID:11882199"
gene 260046..260161
/locus_tag="PM3016_r9"
/db_xref="GeneID:11882200"
rRNA 260046..260161
/locus_tag="PM3016_r9"
/product="5S ribosomal RNA"
/db_xref="GeneID:11882200"
gene 260216..260289
/locus_tag="PM3016_t13"
/db_xref="GeneID:11882201"
tRNA 260216..260289
/locus_tag="PM3016_t13"
/product="tRNA-Ile"
/db_xref="GeneID:11882201"
gene 260312..260384
/locus_tag="PM3016_t14"
/db_xref="GeneID:11882202"
tRNA 260312..260384
/locus_tag="PM3016_t14"
/product="tRNA-Ala"
/db_xref="GeneID:11882202"
gene 260404..260475
/locus_tag="PM3016_t15"
/db_xref="GeneID:11882203"
tRNA 260404..260475
/locus_tag="PM3016_t15"
/product="tRNA-Glu"
/db_xref="GeneID:11882203"
gene 260485..260566
/locus_tag="PM3016_t16"
/db_xref="GeneID:11882204"
tRNA 260485..260566
/locus_tag="PM3016_t16"
/product="tRNA-Tyr"
/db_xref="GeneID:11882204"
gene 260590..260662
/locus_tag="PM3016_t17"
/db_xref="GeneID:11882205"
tRNA 260590..260662
/locus_tag="PM3016_t17"
/product="tRNA-Asn"
/db_xref="GeneID:11882205"
gene 260669..260741
/locus_tag="PM3016_t18"
/db_xref="GeneID:11882206"
tRNA 260669..260741
/locus_tag="PM3016_t18"
/product="tRNA-Val"
/db_xref="GeneID:11882206"
gene 260764..260837
/locus_tag="PM3016_t19"
/db_xref="GeneID:11882207"
tRNA 260764..260837
/locus_tag="PM3016_t19"
/product="tRNA-Asp"
/db_xref="GeneID:11882207"
gene 260861..260933
/locus_tag="PM3016_t20"
/db_xref="GeneID:11882208"
tRNA 260861..260933
/locus_tag="PM3016_t20"
/product="tRNA-Phe"
/db_xref="GeneID:11882208"
gene 260949..261021
/locus_tag="PM3016_t21"
/db_xref="GeneID:11882209"
tRNA 260949..261021
/locus_tag="PM3016_t21"
/product="tRNA-Lys"
/db_xref="GeneID:11882209"
gene 261032..261115
/locus_tag="PM3016_t22"
/db_xref="GeneID:11882210"
tRNA 261032..261115
/locus_tag="PM3016_t22"
/product="tRNA-Leu"
/db_xref="GeneID:11882210"
gene 261122..261193
/locus_tag="PM3016_t23"
/db_xref="GeneID:11882211"
tRNA 261122..261193
/locus_tag="PM3016_t23"
/product="tRNA-Gly"
/db_xref="GeneID:11882211"
gene 261209..261280
/locus_tag="PM3016_t24"
/db_xref="GeneID:11882212"
tRNA 261209..261280
/locus_tag="PM3016_t24"
/product="tRNA-Cys"
/db_xref="GeneID:11882212"
gene 261296..261369
/locus_tag="PM3016_t25"
/db_xref="GeneID:11882213"
tRNA 261296..261369
/locus_tag="PM3016_t25"
/product="tRNA-Arg"
/db_xref="GeneID:11882213"
gene 261375..261448
/locus_tag="PM3016_t26"
/db_xref="GeneID:11882214"
tRNA 261375..261448
/locus_tag="PM3016_t26"
/product="tRNA-Pro"
/db_xref="GeneID:11882214"
gene 261607..261679
/locus_tag="PM3016_t27"
/db_xref="GeneID:11882215"
tRNA 261607..261679
/locus_tag="PM3016_t27"
/product="tRNA-Ala"
/db_xref="GeneID:11882215"
gene 261687..261759
/locus_tag="PM3016_t28"
/db_xref="GeneID:11882216"
tRNA 261687..261759
/locus_tag="PM3016_t28"
/product="tRNA-Thr"
/db_xref="GeneID:11882216"
gene 261765..261851
/locus_tag="PM3016_t29"
/db_xref="GeneID:11882217"
tRNA 261765..261851
/locus_tag="PM3016_t29"
/product="tRNA-Ser"
/db_xref="GeneID:11882217"
gene 261874..261961
/locus_tag="PM3016_t30"
/db_xref="GeneID:11882218"
tRNA 261874..261961
/locus_tag="PM3016_t30"
/product="tRNA-Ser"
/db_xref="GeneID:11882218"
gene 261979..262051
/locus_tag="PM3016_t31"
/db_xref="GeneID:11882219"
tRNA 261979..262051
/locus_tag="PM3016_t31"
/product="tRNA-Val"
/db_xref="GeneID:11882219"
gene 262060..262131
/locus_tag="PM3016_t32"
/db_xref="GeneID:11882220"
tRNA 262060..262131
/locus_tag="PM3016_t32"
/product="tRNA-Thr"
/db_xref="GeneID:11882220"
gene 262174..262262
/locus_tag="PM3016_t33"
/db_xref="GeneID:11882221"
tRNA 262174..262262
/locus_tag="PM3016_t33"
/product="tRNA-Ser"
/db_xref="GeneID:11882221"
gene 262304..262386
/locus_tag="PM3016_t34"
/db_xref="GeneID:11882222"
tRNA 262304..262386
/locus_tag="PM3016_t34"
/product="tRNA-Leu"
/db_xref="GeneID:11882222"
gene 262610..263515
/locus_tag="PM3016_227"
/db_xref="GeneID:11882223"
CDS 262610..263515
/locus_tag="PM3016_227"
/codon_start=1
/transl_table=11
/product="protein GlcT"
/protein_id="YP_005310356.1"
/db_xref="GI:379718225"
/db_xref="GeneID:11882223"
/translation="MYNPGFFGILSELGSLRGAGVESLQVRKVLNNNVIIAVHPEYGE
TVVIGKGIGFSRKQGDAIALDSIEKMFILTNEKAKEQYKLLMHQVDEKLIEVMNDVIF
YISQHAGAPLNEQIHIALTDHIAFAIKRYRQHIPIHNPFQYETRELYPREYLLAQHVI
DEINRRLGVQLPEDEVGFVALHIYSAITNRHVVEVKEHSRLVTDLIDLIERKLEIKIK
KDSLDYARLLRHLMVALERIRRGERVEEPTKIAEIIKNEYPEMYSFAWTLMKVIQQRM
QKPVYEAEAIYLTIHLQRMLPSEGS"
misc_feature 262676..263494
/locus_tag="PM3016_227"
/note="transcriptional antiterminator BglG; Provisional;
Region: PRK09772"
/db_xref="CDD:170086"
misc_feature 262679..262840
/locus_tag="PM3016_227"
/note="CAT RNA binding domain; Region: CAT_RBD;
smart01061"
/db_xref="CDD:198129"
misc_feature 262901..263167
/locus_tag="PM3016_227"
/note="PRD domain; Region: PRD; pfam00874"
/db_xref="CDD:201484"
misc_feature 263270..263491
/locus_tag="PM3016_227"
/note="PRD domain; Region: PRD; pfam00874"
/db_xref="CDD:201484"
gene 263783..265834
/locus_tag="PM3016_228"
/db_xref="GeneID:11882224"
CDS 263783..265834
/locus_tag="PM3016_228"
/codon_start=1
/transl_table=11
/product="protein PtsG"
/protein_id="YP_005310357.1"
/db_xref="GI:379718226"
/db_xref="GeneID:11882224"
/translation="MFKQLFGVLQKVGKALMLPVAILPAAGILLALGNVLHNASLLEL
MPALNAGWIQLIATVMEQAGNIVFSNLALLFAVGVAVGLAGGDGVAGIAAIIGFLIMN
VTMGVFKGVTPEMVKTDMSYANVLGINTLQTGVFGGVIIGILAASMYNRFFKIQLPSY
LGFFAGKRFVPIITAVSSLVLGILMIFIWPPIQSGLNHFSHNMLDANPTLAAFFFGLI
ERSLIPFGLHHIFYSPFWFEFGQYVDKAGEIVRGDQKIFFAQLKDGVALTAGTFMVGK
FPFMMFGLPAAALAIYHEARPEQKKYVAGIMGSAALTSFLTGITEPLEFSFLFVAPFL
FAIHAVFAGLSFMVMQILNVKIGMTFSGGVIDFLLFGVIQNRTAWWLVIPVGLVLAVI
YYFGFRFAIRKFNLKTPGREDTEGAADKQAGAADELPSNVLAALGGQSNIENLDACIT
RLRVQVKESKQVDKDRLKQLGAAGVLEVGNNIQAIFGTHSDILKSQIHDIMQGRAVTA
APAPAAPAAPAAVQTTDASGAVTEEPIVAPLDGELVDISEVPDEVFSQRMTGDGFAIL
PKNGIVASPVNGTIYNVFPSKHAIGIQSEGGKELLVHFGVNTVKLKGKGFTALVAQGD
TVKAGQPILEVDIDFVRENAPSIATPVIFTNLPEGASVKLNKTGPVTLGEKDIITIKL
P"
misc_feature 263786..265291
/locus_tag="PM3016_228"
/note="PTS system, glucose-specific IIBC component;
Region: PTS-II-BC-glcB; TIGR02002"
/db_xref="CDD:162654"
misc_feature <264152..265027
/locus_tag="PM3016_228"
/note="Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
transport and metabolism]; Region: PtsG; COG1263"
/db_xref="CDD:31455"
misc_feature 265058..265285
/locus_tag="PM3016_228"
/note="PTS_IIB, PTS system, glucose/sucrose specific IIB
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIB_glc; cd00212"
/db_xref="CDD:29267"
misc_feature 265121..265141
/locus_tag="PM3016_228"
/note="active site turn [active]"
/db_xref="CDD:29267"
misc_feature 265124..265126
/locus_tag="PM3016_228"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29267"
misc_feature 265385..265756
/locus_tag="PM3016_228"
/note="PTS_IIA, PTS system, glucose/sucrose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_glc; cd00210"
/db_xref="CDD:29265"
misc_feature order(265433..265444,265454..265459,265523..265528,
265532..265537,265553..265561,265577..265585,
265589..265591,265601..265603,265607..265612,
265646..265648,265742..265744,265751..265753)
/locus_tag="PM3016_228"
/note="HPr interaction site; other site"
/db_xref="CDD:29265"
misc_feature order(265433..265435,265439..265444,265448..265450,
265454..265459,265526..265528,265532..265534,
265544..265546,265583..265585,265589..265591,
265601..265603,265607..265612,265616..265618,
265742..265744)
/locus_tag="PM3016_228"
/note="glycerol kinase (GK) interaction site [polypeptide
binding]; other site"
/db_xref="CDD:29265"
misc_feature order(265538..265540,265544..265546,265589..265591,
265595..265597)
/locus_tag="PM3016_228"
/note="active site"
/db_xref="CDD:29265"
misc_feature 265589..265591
/locus_tag="PM3016_228"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29265"
gene 266014..266286
/locus_tag="PM3016_229"
/db_xref="GeneID:11882225"
CDS 266014..266286
/locus_tag="PM3016_229"
/codon_start=1
/transl_table=11
/product="protein PtsH"
/protein_id="YP_005310358.1"
/db_xref="GI:379718227"
/db_xref="GeneID:11882225"
/translation="MQKTFKITSEDGIHARPATALVNTANKFKSEVFAESGGRKVTMK
SILGVLSFGLEPGDTITFLASGEDEAEVMAALEDIMVKEGLGDLHE"
misc_feature 266023..266253
/locus_tag="PM3016_229"
/note="Histidine-containing phosphocarrier protein
(HPr)-like proteins. HPr is a central component of the
bacterial phosphoenolpyruvate sugar phosphotransferase
system (PTS). The PTS catalyses the phosphorylation of
sugar substrates during their translocation...; Region:
PTS-HPr_like; cd00367"
/db_xref="CDD:29444"
misc_feature 266023..266034
/locus_tag="PM3016_229"
/note="dimerization domain swap beta strand [polypeptide
binding]; other site"
/db_xref="CDD:29444"
misc_feature order(266050..266052,266056..266061,266065..266070,
266080..266082,266089..266091,266143..266154,
266161..266166)
/locus_tag="PM3016_229"
/note="regulatory protein interface [polypeptide binding];
other site"
/db_xref="CDD:29444"
misc_feature 266053..266055
/locus_tag="PM3016_229"
/note="active site"
/db_xref="CDD:29444"
misc_feature 266146..266148
/locus_tag="PM3016_229"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:29444"
gene 266279..268003
/locus_tag="PM3016_230"
/db_xref="GeneID:11882226"
CDS 266279..268003
/locus_tag="PM3016_230"
/codon_start=1
/transl_table=11
/product="protein PtsI"
/protein_id="YP_005310359.1"
/db_xref="GI:379718228"
/db_xref="GeneID:11882226"
/translation="MNNIHGIAAASGIAIAKAFRLEAAHLDIRKAEGKDPEAEIQKFE
SALEQSRADLEALKERTRVQLGDEKAEIFESHLLVLGDPELIDPVKEKIRSERINAEW
ALQEVAAGFIAMFENMKSAYLRERAADMRDVTKRVQSYMLGVKFVNLTAIDEEVVLIA
EDLTPSDTAQLNRQFVKGFATNIGGRTSHSAIMARSLEIPAVVGTKNVLEVVQDGDLV
ILDGLTGQVIVKPEPAVVEEYREKQAQYEAQRAEWAKLRSEPSVTADGHHVELAANIG
TPNDVAGVIDNGGEAVGLYRTEFLYMGRDKLPTEKEQFNAYKAVLEKMEGKPVVVRTL
DIGGDKELPYLDLPKEMNPFLGFRAVRLCLEQQDLFRTQLRALLRASVYGNLRIMFPM
IATLDEFREAKAILLEEKAKLIEEQIPVSDSIQLGIMVEIPSTAVMADQFAKEVDFFS
IGTNDLIQYTMAADRMNERVSYLYQPYNPAILRLVQMVIDAAHKEGKWTGMCGEMAGD
ATAIPLLIGLGLDEFSMSASSILPARSQISKLSLAEMKKLAAEALQQRTAADVVALVK
RATEDQVN"
misc_feature 266333..267997
/locus_tag="PM3016_230"
/note="Phosphoenolpyruvate-protein kinase (PTS system EI
component in bacteria) [Carbohydrate transport and
metabolism]; Region: PtsA; COG1080"
/db_xref="CDD:31278"
misc_feature 266333..266659
/locus_tag="PM3016_230"
/note="PEP-utilising enzyme, N-terminal; Region:
PEP-utilisers_N; pfam05524"
/db_xref="CDD:203267"
misc_feature 266732..266944
/locus_tag="PM3016_230"
/note="PEP-utilising enzyme, mobile domain; Region:
PEP-utilizers; pfam00391"
/db_xref="CDD:201201"
misc_feature 267026..267889
/locus_tag="PM3016_230"
/note="PEP-utilising enzyme, TIM barrel domain; Region:
PEP-utilizers_C; pfam02896"
/db_xref="CDD:145842"
gene complement(268354..268860)
/locus_tag="PM3016_231"
/db_xref="GeneID:11882227"
CDS complement(268354..268860)
/locus_tag="PM3016_231"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310360.1"
/db_xref="GI:379718229"
/db_xref="GeneID:11882227"
/translation="MLKTLRVTCLTVALATSLGTAALASDGAAGTTDSGMTGSSTSTS
STGTMNSTGSGTSTSGTDSTSGTSTMSGSDSTSGGINTNSGIDGTSDGTSSGGTSNNL
SGTSGTGTGYNQTSAADDDGMDWGWLGLLGLAGLMGLRGRERDRDHDTYTTTTTTNGS
VTGREKAR"
gene complement(268927..269136)
/locus_tag="PM3016_232"
/db_xref="GeneID:11882228"
CDS complement(268927..269136)
/locus_tag="PM3016_232"
/codon_start=1
/transl_table=11
/product="protein GsiB"
/protein_id="YP_005310361.1"
/db_xref="GI:379718230"
/db_xref="GeneID:11882228"
/translation="MAENNDNKMSREEAGRKGGEATARTHDKEFYQEIGRKGGEATAE
SHDKEFYQEIGEKGGEARARQRQES"
misc_feature complement(<268954..269076)
/locus_tag="PM3016_232"
/note="General stress protein [General function prediction
only]; Region: GsiB; COG3729"
/db_xref="CDD:226252"
gene complement(269426..269719)
/locus_tag="PM3016_233"
/db_xref="GeneID:11882229"
CDS complement(269426..269719)
/locus_tag="PM3016_233"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310362.1"
/db_xref="GI:379718231"
/db_xref="GeneID:11882229"
/translation="MTEYNESKEAEAEALFGMNPPAGEAAANRNAENDAAGPSAQMSE
GFAGSGQHQGSDEDEADEGTDRWFQIMQNAALAGRASFPDQIDYYDPESDEFV"
gene 269925..270311
/locus_tag="PM3016_234"
/db_xref="GeneID:11882230"
CDS 269925..270311
/locus_tag="PM3016_234"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310363.1"
/db_xref="GI:379718232"
/db_xref="GeneID:11882230"
/translation="MAKGMRTAQSVLLVTADAALASYIDSILNKGLGIRIVHVHSFAE
ARTGFAQGGFSAVLADLPDVSVEELGFWKTEVPVLLLATEEARPAARRAVEEGLALLY
MIRDGLSPDTLIGAVMDAVERPGTLW"
gene 270361..271449
/locus_tag="PM3016_235"
/db_xref="GeneID:11882231"
CDS 270361..271449
/locus_tag="PM3016_235"
/codon_start=1
/transl_table=11
/product="response regulator receiver protein"
/protein_id="YP_005310364.1"
/db_xref="GI:379718233"
/db_xref="GeneID:11882231"
/translation="MNGIKADRRLGKEGMTLNKSKGPEETLPRWNRKLLNAYWFFVIS
MTAGETANLFLAESPAWEFIVQSIVRPTLLFVAIMALSEWGYRKLSMSSPLIVIFTGH
LLITVGVWVHAVVDSILLIYVLPLLVSVFYFQKKYVYLASALNLASFLLLYLLNPILY
ERTSGVEVMTTVLLLGYGSPYVAAKIMDRGVDLMRDLKTDALTGLYNHITFHGFLDRA
LERQQAGAGGAMLAVMDIDHFKSVNDTYGHRAGDFVLRRVAAIIQSRIGPDDTAARYG
GEEFALLMPSRSEQEAYALCEDIRLQLAAAAHQELDGRAVTISVGLCRLRPGMDKEAW
FQRADALLYRAKREGRNRTVREDDPGGA"
misc_feature 270955..271422
/locus_tag="PM3016_235"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(271063..271065,271192..271194)
/locus_tag="PM3016_235"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(271078..271080,271087..271092,271102..271104,
271114..271116,271180..271182,271186..271197)
/locus_tag="PM3016_235"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(271168..271170,271252..271254)
/locus_tag="PM3016_235"
/note="I-site; other site"
/db_xref="CDD:143635"
gene complement(271591..271905)
/locus_tag="PM3016_236"
/db_xref="GeneID:11882232"
CDS complement(271591..271905)
/locus_tag="PM3016_236"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310365.1"
/db_xref="GI:379718234"
/db_xref="GeneID:11882232"
/translation="MTQRSSLVALIGLWFIMAPWIMGFAGSSGALWSSVIGGGVLLLS
SLLGYGKSGWDSLFNWISLLSGVWLMIFAMAFPFPLLQASLYLLLGLAAVLLTFYNME
GR"
gene 272134..273045
/locus_tag="PM3016_237"
/db_xref="GeneID:11882233"
CDS 272134..273045
/locus_tag="PM3016_237"
/codon_start=1
/transl_table=11
/product="protein HprK2"
/protein_id="YP_005310366.1"
/db_xref="GI:379718235"
/db_xref="GeneID:11882233"
/translation="MNTVTVQQLVDRFSLEVLAGKDQLHRTIAKTRVYRPGLEFAGYY
DFFSHAHVQILGRKEINYLHKLTEEERNLRIGNVVKYHPPCFVVTRGQEGLKYLKKYC
EEEGIPLLRTGEATSKVMPMMDIYLAKELAEEAAIHGVCVNVSGIGILLRGKSGVGKS
ETAHTLIRRGHRLVADDIVVLKKISPETIIGTHNGKTKEFLALRSIGLINVSRLYGRK
AFQDETRIVLDIELTKWQENALNNELELEPKYTEYMDVKIPHIEIQLQPGRDVAGLVE
AAANNWYLRQQGYSAAEDFMKRLQSED"
misc_feature 272134..273039
/locus_tag="PM3016_237"
/note="HPr kinase/phosphorylase; Provisional; Region:
PRK05428"
/db_xref="CDD:180075"
misc_feature 272137..272517
/locus_tag="PM3016_237"
/note="HPr Serine kinase N terminus; Region: Hpr_kinase_N;
pfam02603"
/db_xref="CDD:190362"
misc_feature 272530..272979
/locus_tag="PM3016_237"
/note="HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates the
utilization of carbon sources by gram-positive bacteria.
It catalyzes both the ATP-dependent...; Region: HprK_C;
cd01918"
/db_xref="CDD:29833"
misc_feature order(272539..272541,272545..272547,272596..272601,
272608..272610,272623..272625,272635..272637,
272662..272667,272671..272673,272719..272721,
272737..272739,272749..272757,272770..272772,
272860..272868,272917..272919,272950..272952,
272959..272961)
/locus_tag="PM3016_237"
/note="Hpr binding site; other site"
/db_xref="CDD:29833"
misc_feature order(272545..272547,272599..272601,272605..272613,
272659..272664,272737..272739,272743..272745)
/locus_tag="PM3016_237"
/note="active site"
/db_xref="CDD:29833"
misc_feature order(272617..272619,272623..272625,272635..272640,
272647..272649,272719..272721,272731..272733,
272749..272751,272755..272763,272770..272778,
272914..272916,272962..272967,272971..272973)
/locus_tag="PM3016_237"
/note="homohexamer subunit interaction site [polypeptide
binding]; other site"
/db_xref="CDD:29833"
gene 273241..274047
/locus_tag="PM3016_238"
/db_xref="GeneID:11882234"
CDS 273241..274047
/locus_tag="PM3016_238"
/codon_start=1
/transl_table=11
/product="NAD-dependent epimerase/dehydratase"
/protein_id="YP_005310367.1"
/db_xref="GI:379718236"
/db_xref="GeneID:11882234"
/translation="MEHSKRLLITGAGGRIGSCLAEGLRAHGGYEVVAADLKEDKTAG
ILQLDVTDGERLNELAQGVDTIMHFAWAKDEGDFLGKVLPVNVTGAYHVYEAARLNGV
KRVIFASSNHATGFYEVGEDVMPDEPYRPDSFYGLSKCYIELLGRYYADKYGVSSINL
RIGNFPGDDQPHSERAAHIFISERDMISLAVCCIEAGPEIDFLSLYGTSANTDNYYDI
GYLEELIGYKPQDDGRTLLEEARRRHVKIKDDETCFQGGAVEKEQPQDRR"
misc_feature 273253..>273789
/locus_tag="PM3016_238"
/note="Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism]; Region: WcaG; COG0451"
/db_xref="CDD:30800"
misc_feature 273262..>273732
/locus_tag="PM3016_238"
/note="extended (e) SDRs; Region: SDR_e; cd08946"
/db_xref="CDD:212494"
misc_feature order(273271..273273,273277..273288,273346..273351,
273427..273429,273445..273450,273493..273495,
273562..273570,273643..273645,273655..273657,
273724..273732)
/locus_tag="PM3016_238"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212494"
misc_feature order(273496..273498,273568..273570,273643..273645,
273655..273657)
/locus_tag="PM3016_238"
/note="active site"
/db_xref="CDD:212494"
misc_feature order(273568..273570,273643..273645,273730..273732)
/locus_tag="PM3016_238"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:212494"
gene 274253..274621
/locus_tag="PM3016_239"
/db_xref="GeneID:11882235"
CDS 274253..274621
/locus_tag="PM3016_239"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310368.1"
/db_xref="GI:379718237"
/db_xref="GeneID:11882235"
/translation="MDLDKLLIKLAGNGFIVVLFLMMLTDASFLGALVTALLLSIVAW
FLGDRFLLPRSSNVIATAADGVLAAMVLWAAARIAPWEMSVPKLIGLVVILGAFEALF
HFFLQRRDPYYRGEAGRAKA"
misc_feature 274268..274609
/locus_tag="PM3016_239"
/note="Protein of unknown function (DUF2512); Region:
DUF2512; pfam10710"
/db_xref="CDD:151203"
gene complement(274850..276136)
/locus_tag="PM3016_240"
/db_xref="GeneID:11882236"
CDS complement(274850..276136)
/locus_tag="PM3016_240"
/codon_start=1
/transl_table=11
/product="protein YaaH"
/protein_id="YP_005310369.1"
/db_xref="GI:379718238"
/db_xref="GeneID:11882236"
/translation="MQIHVVQPGQTLFRLSQAYDVTVQELADANEIPVGRSLVVGQAL
VIPIVGRYYWVRAGDTLTSIAARFGTTPARLAQVNGLNAGQPLRVGLRLYIPPGPKRT
AEFNAYLEPRGDEVSPRLTQSAREAAPYLTYLAPFSFRINRNGTLQPPPLDNLRRIAQ
AQGVTLMMVVTNLENDQFSADLGRVILTNETLQNTLLDNILRTARLLGFRDIHFDIEH
LRPVDREAYNNFLRKAADRIHQQGYLMSTALAPKTSAAQTGEWYTAHDYKAHGEIADF
VVIMTYEWGYSGGPAMPVSPIREVRRVLEYALTEMPGSKIMMGQNLYGYDWTLPFVPG
GAYAKALSPQQAIELAHREQVSIEYDYTAQAPHFSYWDNNRKQHIVWFEDARSIQAKF
NLVKELGLRGVSYWKLGLPFPQNWLLIQDNFTVVKR"
misc_feature complement(274865..276136)
/locus_tag="PM3016_240"
/note="Predicted glycosyl hydrolase [General function
prediction only]; Region: COG3858"
/db_xref="CDD:33648"
misc_feature complement(275999..276133)
/locus_tag="PM3016_240"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature complement(275852..275986)
/locus_tag="PM3016_240"
/note="Lysine Motif is a small domain involved in binding
peptidoglycan; Region: LysM; cd00118"
/db_xref="CDD:212030"
misc_feature complement(274880..275830)
/locus_tag="PM3016_240"
/note="Cortical fragment-lytic enzyme (CFLE) is a
peptidoglycan hydrolase involved in bacterial endospore
germination. CFLE is expressed as an inactive preprotein
(called SleB) in the forespore compartment of sporulating
cells. SleB translocates across the...; Region:
GH18_CFLE_spore_hydrolase; cd02874"
/db_xref="CDD:119353"
misc_feature complement(order(274919..274921,275168..275170,
275288..275293,275297..275299,275486..275488,
275492..275494,275498..275500,275603..275605,
275723..275728,275816..275818))
/locus_tag="PM3016_240"
/note="active site"
/db_xref="CDD:119353"
gene complement(276424..277113)
/locus_tag="PM3016_241"
/db_xref="GeneID:11882237"
CDS complement(276424..277113)
/locus_tag="PM3016_241"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310370.1"
/db_xref="GI:379718239"
/db_xref="GeneID:11882237"
/translation="MAWLFDAFRLLHIAGGFLALFTFWIPLVTVKGGRTHNRSGWFYV
YCMGFVALSALYMGVYRIFLDPSADESLIAFSWFLIFIAVLSSASAWYGLRVLRIKSR
RAPHRGLRDLGFSLLLFLSGIAVCVYGFRIGFPLLQYFPLIGIVLGAQQLYYWRSVPK
TRRHWILEHIGAMMGCCIATITAFTVFGAPRLLGVSSVSIILWFLPTIVMVPLIIAFS
RHYRNKYNPPA"
gene 277342..277836
/locus_tag="PM3016_242"
/db_xref="GeneID:11882238"
CDS 277342..277836
/locus_tag="PM3016_242"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310371.1"
/db_xref="GI:379718240"
/db_xref="GeneID:11882238"
/translation="MENNRQIRSNIWNTVEDLSDMQINTRVEEGKWTIAQVLEHLYLM
EKAITASMSRELNGGEIRPAEEKNFFLTLDRSRSVPAPAPLVPAEGFYTMNELKDKLG
ESRRTLEELLAGIPDEELAQRSFLHPVFGLMDLRQWLTFIGVHEQRHWGQIEELKMGL
PPEE"
misc_feature 277354..277812
/locus_tag="PM3016_242"
/note="Mycothiol maleylpyruvate isomerase N-terminal
domain; Region: MDMPI_N; cl00986"
/db_xref="CDD:207273"
misc_feature 277354..277800
/locus_tag="PM3016_242"
/note="DinB superfamily; Region: DinB_2; pfam12867"
/db_xref="CDD:205116"
gene 277977..278777
/locus_tag="PM3016_243"
/db_xref="GeneID:11882239"
CDS 277977..278777
/locus_tag="PM3016_243"
/codon_start=1
/transl_table=11
/product="short-chain dehydrogenase/reductase SDR"
/protein_id="YP_005310372.1"
/db_xref="GI:379718241"
/db_xref="GeneID:11882239"
/translation="MGLAASAALAQRGFRVTMVCRSRERGEQALKEAISLSGSEELEL
MLCDLGSLRSIRAFAADFRAKYDKLDVLLNNAGVFALKREFTEDGFESMMGVNHLGHF
LLTHLLLKPLLQAPQGRIVVVSSGAHRAGKIHWDDPFLSRGFNFWKGYAQSKLANVLF
TKELARRLAGSGVTANCLHPGAVATSIGVDRRTGFGRSVLRMLKPVFLTPAEGASTAV
YLAVSEEAAGVSGEYYYKQKPAPVSRLAADPEAAGRLWAWSEKAVGLT"
misc_feature 277977..278744
/locus_tag="PM3016_243"
/note="retinol dehydrogenase (retinol-DH), Light dependent
Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and
related proteins, classical (c) SDRs; Region:
retinol-DH_like_SDR_c_like; cd05327"
/db_xref="CDD:212492"
misc_feature order(277977..277979,278034..278042,278115..278123,
278199..278207,278262..278264,278361..278369,
278424..278426,278436..278438,278514..278525,
278529..278534)
/locus_tag="PM3016_243"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:212492"
misc_feature 277980..278672
/locus_tag="PM3016_243"
/note="3-oxoacyl-(acyl-carrier-protein) reductase; Region:
3oxo_ACP_reduc; TIGR01830"
/db_xref="CDD:162551"
misc_feature order(278265..278267,278367..278369,278424..278426,
278436..278438)
/locus_tag="PM3016_243"
/note="active site"
/db_xref="CDD:212492"
gene 278774..279262
/locus_tag="PM3016_244"
/db_xref="GeneID:11882240"
CDS 278774..279262
/locus_tag="PM3016_244"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-3"
/protein_id="YP_005310373.1"
/db_xref="GI:379718242"
/db_xref="GeneID:11882240"
/translation="MMIMNEKIKAAEVELTGLDGESLGVVSRDEALAMAKKLKVDLVC
TSLMSSPPPCRLIGRGAAKEAQQKEKRAAGGGAPAKVKELRLTPHIEEHDYETKQRQA
EKLLASGHAVQLVVKTGSAKESAAAKALLERLLKDLAPAGSGESGIQVSGKGAQVKVN
PQ"
misc_feature 278783..>278944
/locus_tag="PM3016_244"
/note="Translation initiation factor IF-3, N-terminal
domain; Region: IF3_N; pfam05198"
/db_xref="CDD:191228"
misc_feature 279011..>279124
/locus_tag="PM3016_244"
/note="Translation initiation factor IF-3, C-terminal
domain; Region: IF3_C; pfam00707"
/db_xref="CDD:201407"
gene 279303..279626
/locus_tag="PM3016_245"
/db_xref="GeneID:11882241"
CDS 279303..279626
/locus_tag="PM3016_245"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310374.1"
/db_xref="GI:379718243"
/db_xref="GeneID:11882241"
/translation="MGRRWLPAWQQRLTPPAPSAPGLGRLRVELHEFEAVAVRGVDPA
LPVAVFAHLGLDTERHAMAAQVGGHGFNALGLQAEVREADRAFDGLRAVPAAVVQLDE
LQPDT"
gene 279936..281054
/locus_tag="PM3016_246"
/db_xref="GeneID:11882242"
CDS 279936..281054
/locus_tag="PM3016_246"
/codon_start=1
/transl_table=11
/product="excinuclease ABC subunit C"
/protein_id="YP_005310375.1"
/db_xref="GI:379718244"
/db_xref="GeneID:11882242"
/translation="MPFVFQAAVYPERPGCYIMKNEAGRILYVGKSKNLRSRLRSYFQ
TNHKRKRLRQLVEEIASIEVMLVNNEAESLLLENNLIKIHKPPFNRALKKDNSGYAYL
HMTAERLPRLDVYYRDRRPSAVRAASAASGEKKPETPDKEQRFGPYRSSRFRNAVMEF
VADHYRLRTCTTMPKRVCLLYHIGRCSGVCEGKISEEEYRETARQAAELLLRHGDDLI
AAMYGKMEYYAERLQFEEAASMLRHIRVLEQMPAKQIVDREALVDQDVLYFGEERVLV
GKVQEGMLRDFDLLPLDQGLGDAACDRFLVSRYSAERPHELIVNRICDPRMVRSLLHR
GGGPPVKITQPKRGLKYELLQLCKENYEYRLQRELQGC"
misc_feature 279966..280205
/locus_tag="PM3016_246"
/note="Catalytic GIY-YIG domain of nucleotide excision
repair endonucleases UvrC, Cho, and similar proteins;
Region: GIY-YIG_UvrC_Cho; cd10434"
/db_xref="CDD:198381"
misc_feature order(279978..279986,280017..280025)
/locus_tag="PM3016_246"
/note="GIY-YIG motif/motif A; other site"
/db_xref="CDD:198381"
misc_feature order(279984..279986,280017..280019,280023..280028,
280047..280049,280059..280061,280164..280166,
280200..280202)
/locus_tag="PM3016_246"
/note="active site"
/db_xref="CDD:198381"
misc_feature order(280017..280019,280047..280049,280164..280166)
/locus_tag="PM3016_246"
/note="catalytic site [active]"
/db_xref="CDD:198381"
misc_feature order(280017..280019,280047..280049,280164..280166)
/locus_tag="PM3016_246"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:198381"
misc_feature 280164..280166
/locus_tag="PM3016_246"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:198381"
misc_feature 280446..>280763
/locus_tag="PM3016_246"
/note="Diacylglycerol kinase catalytic domain; Region:
DAGK_cat; cl01255"
/db_xref="CDD:213104"
gene 281263..281871
/locus_tag="PM3016_247"
/db_xref="GeneID:11882243"
CDS 281263..281871
/locus_tag="PM3016_247"
/codon_start=1
/transl_table=11
/product="5-carboxymethyl-2-hydroxymuconate
delta-isomerase"
/protein_id="YP_005310376.1"
/db_xref="GI:379718245"
/db_xref="GeneID:11882243"
/translation="MIYGRDVTRKVICIGPNFRAFREEKGITNDGELSLSLKSPESLT
FGDTVRVSREMGAFICEVEMAVIIGRDAKNVSEDEAASVIAGYAIANDMTAADHFGDG
RLKMYDEMTPIGPMVELRDPSDVELELWVNGQRIQQGHTSEMLFAPLWQVAHLSRIMT
LRRGDVILSGTPANPQVCQPGDRIELRSPQLGTLSHTVVVEP"
misc_feature <281287..281868
/locus_tag="PM3016_247"
/note="2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway) [Secondary metabolites biosynthesis,
transport, and catabolism]; Region: MhpD; COG0179"
/db_xref="CDD:30528"
misc_feature 281290..281859
/locus_tag="PM3016_247"
/note="Fumarylacetoacetate (FAA) hydrolase family; Region:
FAA_hydrolase; pfam01557"
/db_xref="CDD:201859"
gene complement(281930..282877)
/locus_tag="PM3016_248"
/db_xref="GeneID:11882244"
CDS complement(281930..282877)
/locus_tag="PM3016_248"
/codon_start=1
/transl_table=11
/product="putative UV damage endonuclease"
/protein_id="YP_005310377.1"
/db_xref="GI:379718246"
/db_xref="GeneID:11882244"
/translation="MEIRIGYVSMALAIFNNTPSSTFTYKLFSQRPREEAMQRAIEVG
RKNLEATRRILYYNAAHGIRLFRLSSSLIPLATHPEVLIDVGEVYKKELAELGGFARR
HDIRLSMHPNQFTLLNGKDPVVEAAIRDLEYHAALLDGMGLDDSAVINIHVGGVYGDK
ASAMERLYEKFPEVPAPVAARMTFENDDKTYTLLETLEVCERLGRPMMLDLHHDWCNP
SGTDPLDVLGRIRATWGGRPMKIHVSSPKEEKDFRSHADYINPEPLAAFLRGCREAGM
ERIDVMVEAKMKDLAALRLAEDLGKIRGLKRTDGGMLKW"
misc_feature complement(281933..282877)
/locus_tag="PM3016_248"
/note="putative UV damage endonuclease; Provisional;
Region: uvsE; PRK02308"
/db_xref="CDD:179412"
misc_feature complement(282197..282628)
/locus_tag="PM3016_248"
/note="Xylose isomerase-like TIM barrel; Region:
AP_endonuc_2; pfam01261"
/db_xref="CDD:201692"
gene 283068..283634
/locus_tag="PM3016_249"
/db_xref="GeneID:11882245"
CDS 283068..283634
/locus_tag="PM3016_249"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310378.1"
/db_xref="GI:379718247"
/db_xref="GeneID:11882245"
/translation="MDHRFPGDPRAGACRLPDGYAVLAERYANTALSAAVNVTGDWPA
GRAAVRAALANAARKKAELPPPHEAGRWLYLQARREALRMRRKEGLPGWSMSRAEAAE
AVLPGGAAPYEALGRVQEQDRGLFLLRELGGLGEAEIARAVNLTLNAVRVRLRRTERR
WDSASLAAVCRSLAARRLPRGWASAMAE"
gene 284061..284522
/locus_tag="PM3016_250"
/db_xref="GeneID:11882246"
CDS 284061..284522
/locus_tag="PM3016_250"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310379.1"
/db_xref="GI:379718248"
/db_xref="GeneID:11882246"
/translation="MEANPKQGLSPEQEKAIGDNMTKYEKHYSEEGFWSKIKKYAKQA
GEVVVHAGLLLYYALNSPKTPTRAKMQIYGALGYLILPVDLIPDFVIGMGFLDDWGAL
ALAIKSVSEAIDDEVKRQAKEKVDDLFGGTEEDGQPKSTVMNSPAQEVRQP"
misc_feature 284151..284438
/locus_tag="PM3016_250"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG3339"
/db_xref="CDD:33148"
gene complement(284501..284596)
/locus_tag="PM3016_251"
/db_xref="GeneID:11882247"
CDS complement(284501..284596)
/locus_tag="PM3016_251"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310380.1"
/db_xref="GI:379718249"
/db_xref="GeneID:11882247"
/translation="MKRARPLGAVLFWRPALLSSLQILHYGCRTS"
gene complement(284625..284831)
/locus_tag="PM3016_252"
/db_xref="GeneID:11882248"
CDS complement(284625..284831)
/locus_tag="PM3016_252"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310381.1"
/db_xref="GI:379718250"
/db_xref="GeneID:11882248"
/translation="MYFSKRTMEPAPQEETPVWTCSKEGCNSWMRDNFAFEEQPYCPL
CSSVMVQNTKMLPVLVNHFTNAKK"
misc_feature complement(284655..284831)
/locus_tag="PM3016_252"
/note="Cold-inducible protein YdjO; Region: YdjO;
pfam14169"
/db_xref="CDD:206338"
gene 284906..285175
/locus_tag="PM3016_253"
/db_xref="GeneID:11882249"
CDS 284906..285175
/locus_tag="PM3016_253"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310382.1"
/db_xref="GI:379718251"
/db_xref="GeneID:11882249"
/translation="MDAGELQLDYILGLWSAVALNHIELYALAFVQGFVAFSLNGAEV
NEYVLAAFHFDEAKSFFRVKPFHCSCFHDRHSLQRSAKCAYTAVK"
gene 285359..286270
/locus_tag="PM3016_254"
/db_xref="GeneID:11882250"
CDS 285359..286270
/locus_tag="PM3016_254"
/codon_start=1
/transl_table=11
/product="fatty acid desaturase type 2"
/protein_id="YP_005310383.1"
/db_xref="GI:379718252"
/db_xref="GeneID:11882250"
/translation="MPAQNYKLNEIDLRLEPYLTELYRLHRTRAAAIDWSYHEFIPWE
LGRSFKEHPWSIDQRTLPDPIYLAVETSLLTEVNLPFFYHHLAVTFKGSLKVLQDFVH
TWVSEEDQHSSLLETYLIITRNADPAALHQLRKTVVEGGFVPDFDTAMETMVYTAVQE
LATMVFYNNVAKSAGPYDKNLASLLRRLAKDESLHFAFYRDVVKGYLGQDHNFVYYIH
KAMTSFAMPGRDMPMFKERMDVIAQEAGYGPVSYFNQVFDHLIQVWGIQDIKPSRTEA
ENARLDLLEYHGKLKRISARLAARGMK"
misc_feature 285383..286246
/locus_tag="PM3016_254"
/note="Ferritin-like superfamily of diiron-containing
four-helix-bundle proteins; Region: Ferritin_like;
cl00264"
/db_xref="CDD:213088"
misc_feature order(285584..285586,285680..285682,285689..285691,
285836..285838,285932..285934,285941..285943)
/locus_tag="PM3016_254"
/note="dinuclear metal binding motif [ion binding]; other
site"
/db_xref="CDD:153097"
gene 286393..287151
/locus_tag="PM3016_255"
/db_xref="GeneID:11882251"
CDS 286393..287151
/locus_tag="PM3016_255"
/codon_start=1
/transl_table=11
/product="N-acetyltransferase GCN5"
/protein_id="YP_005310384.1"
/db_xref="GI:379718253"
/db_xref="GeneID:11882251"
/translation="MSEIRYYEEWAMNAWPCLQTQAVDGWLLRWADGYTKRANSVQPL
YPAHLPLGQKIREAEAFYRRLELPVIFKMTEASEPAGLDAELEKRGYALVEPVSIQTL
RFGENDLPQPAHGEIELSPGLTKEWLSSFLAMSPSHAPHKETIRRLFAQPLSDCCFAA
LKVNGETAACGLSVLHGGEAGLFDIVTGPAYRRRGYGEALILHLLHWGRERGARGAFL
QVLAENEPAVRLYAKLGFTERFRQWYRVKQEVRD"
misc_feature 286864..287046
/locus_tag="PM3016_255"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(286945..286953,286981..286986)
/locus_tag="PM3016_255"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 287263..288048
/locus_tag="PM3016_256"
/db_xref="GeneID:11882252"
CDS 287263..288048
/locus_tag="PM3016_256"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310385.1"
/db_xref="GI:379718254"
/db_xref="GeneID:11882252"
/translation="MPSKDGVMESAGRPRRLLALLSSFGVTSLQRQNPYIVAWWSAAF
PGFGHLLLQQYIRGVLLTLSEVFTNTLAHINEAIVYSFSGRYLMAREVLDPVWLYGYC
VIYLYAIWDSYRSTLETNRQCELAEIENARLQAMVLRPVTIQYLERKSPRAAAAASFF
FPGLGQLYNHRVGLAFYAMIWWWVYLYLSNLHASLLALLLGHPAESAAMLRPHWLLFM
PSVMCGSIYHAYVTAVEHNRLFRVEQRQYLKERYPAAGFKILP"
gene 288061..288579
/locus_tag="PM3016_257"
/db_xref="GeneID:11882253"
CDS 288061..288579
/locus_tag="PM3016_257"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310386.1"
/db_xref="GI:379718255"
/db_xref="GeneID:11882253"
/translation="MLVIGTFEHRVELEQALLQLEYQGVPQRCILAVPMAVTPQGPFK
YSGQPSDLSAKSFEVGMACATAFSVLGISAGFVLEPGPIICGIIAAVGGFFLGQGLYR
KYTASSGQLSPLRAPRLPEVTVIVRCSRQQVPQVAEVMWKHHALTVGEAEDEGEPEER
EAGRHKSAGSGA"
gene 288621..288794
/locus_tag="PM3016_258"
/db_xref="GeneID:11882254"
CDS 288621..288794
/locus_tag="PM3016_258"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310387.1"
/db_xref="GI:379718256"
/db_xref="GeneID:11882254"
/translation="MATSRNHQGAHGIGQTEEQLNNQAQAAVQIQGESETDQEVLAAA
NREDSELDEIIES"
gene 289037..290896
/locus_tag="PM3016_259"
/db_xref="GeneID:11882255"
CDS 289037..290896
/locus_tag="PM3016_259"
/codon_start=1
/transl_table=11
/product="histidine kinase"
/protein_id="YP_005310388.1"
/db_xref="GI:379718257"
/db_xref="GeneID:11882255"
/translation="MKLSFQLKMIAGLSVIILLSCGLSGYLSYINQLRLFEEEVGRQY
EKNVEGALSHLELRIGEMYRISNYIVFNSLIEKAVTELMHGRVQGDIGEYETHSRLED
LLRQVKLDAPFIDSLYIYDLEGRNYYFGHMKETLGSLDPEVFQQIKSRAGASSGELVW
TRVRVPSYVERAGYSDAVIAARWLRSKSLGTYGLLVMVLDESLLGSPLQELFRGDRGG
IYLYDAQDRLLYLKETSGTEPALAELEGGQRIRKEGGESYLYAVHSSATYNWTLVSRV
SLAALQDKSRVTLQMALVSALVAILLGGMLIVLLSGRLTRPLKDLVKAMRAMREGDFN
VRIQPRTHDELAFIGEGFNTMAANVRSLIEEVYLRQLSEREAELKAIQAQLNPHFLYN
TLNGLYWKLYVKDDRESAELVSALSGLLRYSLERASTDTELREELRQIRNYVEIQKAF
VESRFEAEIEAEETVLACAVPRLLLQPLVENVFVHAFLSGPEDKRLSVRAYAEGQVLV
VDIADNGAGMEEGQIVRLLRPVSEEEGVRPSIGIRSVLRRIDLLYGEPYGLGIESSPG
RGTQVRLRLPLRYRGGEGAEAWEGVEYGAAEAPCGDGRPKRPGEAGCSTTGEG"
misc_feature 289850..290770
/locus_tag="PM3016_259"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 289976..290116
/locus_tag="PM3016_259"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(289976..289981,289988..289993,289997..290002,
290009..290014,290018..290020,290066..290071,
290075..290080,290087..290092,290096..290101,
290108..290113)
/locus_tag="PM3016_259"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 290165..290380
/locus_tag="PM3016_259"
/note="Histidine kinase; Region: His_kinase; pfam06580"
/db_xref="CDD:203479"
misc_feature 290447..290761
/locus_tag="PM3016_259"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(290465..290467,290477..290479,290486..290488,
290567..290569,290573..290575,290579..290581,
290585..290590,290654..290662,290717..290719,
290723..290725,290738..290743,290747..290749)
/locus_tag="PM3016_259"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 290477..290479
/locus_tag="PM3016_259"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(290579..290581,290585..290587,290657..290659)
/locus_tag="PM3016_259"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 290899..292430
/locus_tag="PM3016_260"
/note="AraC family transcriptional regulator"
/pseudo
/db_xref="GeneID:11882256"
gene 292804..296478
/locus_tag="PM3016_262"
/db_xref="GeneID:11882257"
CDS 292804..296478
/locus_tag="PM3016_262"
/codon_start=1
/transl_table=11
/product="agarase"
/protein_id="YP_005310389.1"
/db_xref="GI:379718258"
/db_xref="GeneID:11882257"
/translation="MNVRRLLSGGCAGVLLFSGIGVSNAAGTAGGSGGVSAPQLKTVT
YSGAGAAGEAAVNGTAQGGAPASGEAVPRLAADAGGSAGTAETETQALATAVQVDRFG
QWVSATFPEKVTSESQLLEDVAADAAYYGALQAPDWDPYGGLKGSREQYGLNATGFYS
IQEAAGRKVMVTPEGNLFFSLGVNGIAPTDTYTVVTGREGIYEWIPPYESEYKSAFLN
TKDNFSYYLANRIRKTGQPYTSRSLYTEGIQRIRKWGFNTAAGWTPVNLSREFSVPHV
PFLPLSDMAWAKVNGLKFFDIFVDGAEAKLDAALGPLLTEHKNNPYIIGYFFGNESYY
HKLAPDLPKMKGSEVAAKRRLVQMLQEKYGTIEAFNAAWNGTYASFTALIDAPLYIDS
QQAQYDVDDFVKLYLDTFFGTVSRVFRKYDPNHLLIGDRWLTLPVNNVKVRGFLAEAA
GRHLDVISINHYSKNLDTVMLNHIHQASGGKPIMLTEIGYGSSEQGLGAPTQMLVADQ
NERMLRYRNYVEGAASLGYIVGVHWFAYLDQAATGRWAEGTTGERYNFGLLNVADRPY
KPFLEGVMASNKDIYPVLLGQRVPFKHEFGDVPRQPGTNKMEIPYTPAPIPIDGEVNG
FPGDAAAVTLGPGQLVNGTGGEGMQGEYTFAWDENRLYVTAVIKDPTPMKNNNPNINV
WRGDGVELFFGPQDLTTPGDPLFLDRQLIASAGLNNGQPFWYWYFTNRQKPVEMAVKL
LPDGSGYVLEAALTWDSINLQGQADTRFLFDFGFDDSEDGNTRKRQWVWNGTSANSTN
RGHWGQATLVKRAAPAIRITGVEEGGDYTDEVLPVVEVEDATGVRSRTVTLDGAPWTD
GTPVTAPGSHELTVEAVNTVGITAKKTVTFAVYGSTALELSPAAGQYSDEVQLEAKLS
GSSGGPVPGAELSFEVNGSAAGTAVTDAQGRAVLPYRISTGPESGQLSVKAAYTPAAG
LYLRPAASEGALTVRPEDAALQYTGETYVKERRPAVLSAQVVQADDGSAGALSGLPVR
FTVSEVRPDGTLRELAGVTDSVYATGADGRAEAAAQLPPGLYEVRAELLAGPLYKAPA
PVRSTLAVAAPVAGHSVTVNGTVPGGTFLGKPAGTLVLNSMVSYDLAGGLTGALRVSG
EPGGAELYVKSFDWLVIAGDRAYVQGTAVSGRQTYTVRLLLKELTTVSLYVWKGRDTS
AEPVHKQLNAQLTGAVLTLP"
misc_feature <293725..>294264
/locus_tag="PM3016_262"
/note="Beta-galactosidase; Region: Glyco_hydro_42;
cl03154"
/db_xref="CDD:207859"
misc_feature 294655..295227
/locus_tag="PM3016_262"
/note="Domon-like ligand-binding domains; Region:
DOMON_like; cl14783"
/db_xref="CDD:209894"
misc_feature order(294868..294870,294928..294930,295120..295122)
/locus_tag="PM3016_262"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:187675"
gene 296786..297757
/locus_tag="PM3016_263"
/db_xref="GeneID:11882258"
CDS 296786..297757
/locus_tag="PM3016_263"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_005310390.1"
/db_xref="GI:379718259"
/db_xref="GeneID:11882258"
/translation="MKSVQTSRLGSLGAEERPGLSGERLRRRRQWKQNVPLLLMFLPG
VLFYVIFKYVPMGGLVIAFKDYNFADGVFGSPWVGWANFELLFSQAQTLNIIRNTLLL
SLLSLVVGFPVPIVLAILLNEARRMWFKRIVQTLVYLPHFLSWVIVGGIVLSLFSLES
GSINRWITSLAGEPYPFLYEPVSWIAVFIGSGIWKEMGFSAIIYLAALTTIDPHLYES
AAMDGAGKLRQIWHITLPGISSTVILLLILGVGKIMEVGFDQVWVLQNEAVSSVSGVI
STYIYTFGIQRGQFSVTTAMGLFDSLVGFILVLTANSIARRFNQGLW"
misc_feature 296849..297754
/locus_tag="PM3016_263"
/note="ABC-type polysaccharide transport system, permease
component [Carbohydrate transport and metabolism]; Region:
LplB; COG4209"
/db_xref="CDD:33938"
misc_feature 297071..>297499
/locus_tag="PM3016_263"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(297119..297124,297131..297136,297149..297151,
297182..297193,297197..297226,297233..297238,
297242..297244,297359..297364,297374..297376,
297380..297382,297389..297394,297398..297400,
297410..297415,297422..297424,297473..297475)
/locus_tag="PM3016_263"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature 297200..297244
/locus_tag="PM3016_263"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(297425..297463,297479..297484,297494..297496)
/locus_tag="PM3016_263"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 297774..298649
/locus_tag="PM3016_264"
/db_xref="GeneID:11882259"
CDS 297774..298649
/locus_tag="PM3016_264"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_005310391.1"
/db_xref="GI:379718260"
/db_xref="GeneID:11882259"
/translation="MKSTFTEKIFYTVNYLILFLIAMTCLLPLVHLASLSLSDSHAVL
SGRVTLWPVGWTLESYQMLWEGTRIVEAFGNSLIITVVGVILSMICTILTAYPLSRRY
FFGRRWFLLAAVFTMLFAGGTIPTYLVIKELGLVNNYGALWLPALVNTYNMLVLRTFF
ENIPEELEDAARMDGCGEWRMLIGMMLPLSLPALATLTLFYGVGFWNSFLSVLIYINE
TDKYNLTVLVQQMIRKQSLLQELVSVQPEDAANLTPEGIKAAGVMVLIIPMMIVYPFL
QKYFVKGVMLGSIKG"
misc_feature 297909..298643
/locus_tag="PM3016_264"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 297990..>298319
/locus_tag="PM3016_264"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(298038..298043,298050..298055,298068..298070,
298098..298109,298113..298124,298125..298130,
298134..298136,298209..298214,298218..298220,
298224..298226,298233..298238,298242..298244,
298254..298259,298266..298268,298317..298319)
/locus_tag="PM3016_264"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature 298269..298307
/locus_tag="PM3016_264"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 298682..300337
/locus_tag="PM3016_265"
/db_xref="GeneID:11882260"
CDS 298682..300337
/locus_tag="PM3016_265"
/codon_start=1
/transl_table=11
/product="family 1 extracellular solute-binding protein"
/protein_id="YP_005310392.1"
/db_xref="GI:379718261"
/db_xref="GeneID:11882260"
/translation="MQVKRIGKKVVASLIASLSMGLLLAACTDSDQKPKEAVDDPSKP
PAKQDISVTIYDKGAVPKAEGTVESNRWTKWINEKGPANVKFVAVPRWESQEKLNVLF
SSASAPDLIFEYAPHIKNPIYDQKQMMPIDELIEKHSTEYKKLLADNPALRKVGMKAD
GKLYEFARLSEVVPIHAILIREDWLQKLNLQAPKTTEELYQVAKAFAEKDPDGNGKKD
TYGMAISFQSGYVVDQIFQATRWVVTDGKLVRNWENFRHMAEFKKRLFDEGIVDRDYL
NDKNGAKAKQDFINGKIGIYPLQISWPSFTNGELAGLKKNVPDAKVAPIAYPKSPAGE
FNPAFTNPVQATAFVNRAAKHPEAVMKYVDFLVKQDTAKTLKYGIENEHWKVGPTGCP
VPIDPEKSKNEVNWTADYQMLSSGILDEKCGKTVSTFNSEVPIQKEGLELYQKALAIY
LDLSKPYVELTHPEHMPQLPKDINVISDSMTKPIDDIWVKAVLGGKEYTPEQAMKDAQ
DTWNKGNGKKVEDWFLNWYEKDRDKAFLAKDIYDIMKKQHNLK"
misc_feature 298703..299821
/locus_tag="PM3016_265"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
misc_feature <299210..299800
/locus_tag="PM3016_265"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:201851"
gene 300596..304708
/locus_tag="PM3016_266"
/db_xref="GeneID:11882261"
CDS 300596..304708
/locus_tag="PM3016_266"
/codon_start=1
/transl_table=11
/product="agarase"
/protein_id="YP_005310393.1"
/db_xref="GI:379718262"
/db_xref="GeneID:11882261"
/translation="MNLRRGLLMLCLWSLMFSTFTGWAPQGGVQAAEPAASVLNDEFQ
SWSLTHEHSPTLTLESAGTGGFDPTRVKRSAAYKEFITYKTAEPLQSFAVYGYYHPQG
KPYDHPLFYVSPNGTDYTKVTPGLIELGGYFPLIIYELEGLPAGSVYLKIEYTGGLIV
RSPLIGRVVLNGPSVVVPGMPPGEVSAGSKLTLSSTAGASIFYTTDGSDPRTSPAKKL
YTDGIGLSGISLLKAYSQFGTNTASASAVNTFRYIVKGTQDRVVPVTEDVYVDGTVPD
TNRGTEPLLFMKALKNREAYLKFDLSKVDAGTQKVYLNLYGQTYDSSQAPARLKLYGV
DSSWSEGTMTYNTKPLPTPAPAGAEIGEAVWPYEPSGWMSIDITGYIKGQKALGKTTA
SVGIVNTTDGAAYVNAKEAGGNAPYLLLVQGQPGTGPGEEPVNLPGLVDPLDTFEHVM
ARTNMRTEGADAQYLGGDLKRATRSTTALGSLTYKTAYDIQSFAIHSYFFMGVAVDPL
KVYASPNGTSFTEVVLQPYKSGAPVSNWQMFVYEAKGLPAGTRYLKIEVKGDVKAWTP
QIGKVILNKNVMSVLAVPDHGTVVGQPISVTLSTPTSGAQIFYKLNAETEARPYTGAI
SVQDSTTLHAFAIKNGLEASAPRSYVYRSKADWVVDKYGQMNSADFPEKVKTDDELRA
DLAADKAYYDGLQAPNWDAYGGLVGSKETYGLQAKGYYNVQTAADGRKILVTPLGTAF
FSVGINGISPNDTYTMVTGREEIFEWLPDYANTEYKSAFMGTKDYFSYYLANYIKKTG
TPYTSEAFYQTSWARMKKWGFNSAGGWSPTPLSEQFKVPYFPFLPLGSLEWAKIEGVK
IFDIFADGAEAKLEAALEPVLTPNKNNPLIVGYFLGNENHYQKIAPEIPKLKGSVVAA
KRRLVQMLQEKYGTIEAFNTAWNGTYGSFAELNDAVLYVDSQQAQYDVDDFVKLYLDT
YYGTIARVFRKYDPNHLLLGDRWLTIPMNNAKLRGFMAEAAGRHMDVISMNHYAKNLN
VTMLGEVHAKSGGKPLILTENGFGTMEQGLGSPLLVADQNERQLRYRTYVEGAASLGY
VVGAHWFTYLDQAATGRWSEADDGEHYNFGLVNVADRPYKTFLQGVMATNHDIYSVML
GRKEPFRYDFGDAPRQPGNNTMAIPYTPVPVPIDGEVNGFPAGAPKFVLDEAQRVVGT
DGAGMSGEYTLAWDNTNLYVTASITDPTPMRNQYTDMNVWRGDGVELFFGPGDLTTPG
DPLFNDRQLIMSAQPTAEGQPFWYWFNTSRQKAVNMAVKARSGGYVIEAAIPWETVNM
QASEGLQFLFDLGFDDSEDGENRKRQWMWNGTNTNSTERSNWGKATLVKP"
misc_feature 301166..301351
/locus_tag="PM3016_266"
/note="Fn3 associated; Region: Fn3_assoc; pfam13287"
/db_xref="CDD:205467"
misc_feature 302381..302548
/locus_tag="PM3016_266"
/note="Fn3 associated; Region: Fn3_assoc; pfam13287"
/db_xref="CDD:205467"
misc_feature <303236..>303670
/locus_tag="PM3016_266"
/note="Beta-galactosidase; Region: Glyco_hydro_42;
cl03154"
/db_xref="CDD:207859"
misc_feature 304130..304699
/locus_tag="PM3016_266"
/note="Domon-like ligand-binding domains; Region:
DOMON_like; cl14783"
/db_xref="CDD:209894"
misc_feature order(304343..304345,304403..304405,304592..304594)
/locus_tag="PM3016_266"
/note="putative ligand binding site [chemical binding];
other site"
/db_xref="CDD:187675"
gene complement(305032..305970)
/locus_tag="PM3016_267"
/db_xref="GeneID:11882262"
CDS complement(305032..305970)
/locus_tag="PM3016_267"
/codon_start=1
/transl_table=11
/product="ArsR family transcriptional regulator"
/protein_id="YP_005310394.1"
/db_xref="GI:379718263"
/db_xref="GeneID:11882262"
/translation="MSTPIDIKFAPTYELINSLHTYLCRIWHKRIDLGADWHAGVRDR
LSPGFRSHLDASELRPEWRFVYLLAHLYPGRGGPASFLDWLEELSPGDMYELLAPRLP
AVTGDLAGLQQWLAGLLRPWYEQYFAGFDQDMLVRLEQAAGQHRALLGTLPPAELAEE
LTNGLRFEEDGGIRQLVLTPQYHFQPGNVFYLYGGGLLLCQYPADLHAPQPDDGPSPP
LYRTLRSLGERSRLRILRYVSGGPRSFTDILRHVGLSKGITHEHISNLRCAGLLRAHV
VGENVTVFSLRSSAVIRLQEQLLSYVEGDADNSHDV"
misc_feature complement(305092..305304)
/locus_tag="PM3016_267"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature complement(order(305095..305100,305161..305163,
305251..305253,305260..305265,305272..305277,
305284..305286,305293..305295,305299..305304))
/locus_tag="PM3016_267"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:28974"
misc_feature complement(order(305119..305124,305128..305130,
305143..305151,305167..305172,305176..305181,
305188..305193,305197..305208,305233..305241,
305278..305286,305296..305301))
/locus_tag="PM3016_267"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature complement(order(305098..305100,305230..305232,
305239..305241))
/locus_tag="PM3016_267"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
gene complement(306122..307138)
/locus_tag="PM3016_268"
/db_xref="GeneID:11882263"
CDS complement(306122..307138)
/locus_tag="PM3016_268"
/codon_start=1
/transl_table=11
/product="protein AppF"
/protein_id="YP_005310395.1"
/db_xref="GI:379718264"
/db_xref="GeneID:11882263"
/translation="MNRSSLHPHTGAPVGSTDGGSLLDVRDLKTHFPVTGGFLGRTVG
HVKAVDGLSLTLRRGEAFGLVGESGSGKSTAGRTILRLTEKTSGGVFYKGRDLYALPK
EELRRLRPELQMIFQDPYSSLSPRLRIGDAIGEALLEHGRATRQEVRSRVAEVMELCG
LPPGQMDRYPHEFSGGQRQRIGIARAMALRPELLVADEPVSALDVSIQAQIINLFSDL
RESRSLTYLFISHDLSVVEHLCDRVGVMYLGSLVELAPRDELFTRPLHPYTRALLSAV
PVPDPAARRERIVLRGDIPSPAAPPPGCKFHTRCPYVMPRCREEEPAYRQVVEERFAA
CHFV"
misc_feature complement(306125..307075)
/locus_tag="PM3016_268"
/note="dipeptide transporter ATP-binding subunit;
Provisional; Region: dppF; PRK11308"
/db_xref="CDD:183084"
misc_feature complement(306374..307075)
/locus_tag="PM3016_268"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(306920..306943)
/locus_tag="PM3016_268"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(306446..306448,306545..306550,
306788..306790,306917..306925,306929..306934))
/locus_tag="PM3016_268"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(306788..306799)
/locus_tag="PM3016_268"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(306593..306622)
/locus_tag="PM3016_268"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(306545..306562)
/locus_tag="PM3016_268"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(306527..306538)
/locus_tag="PM3016_268"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(306440..306460)
/locus_tag="PM3016_268"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(306128..306391)
/locus_tag="PM3016_268"
/note="oligopeptide/dipeptide ABC transporter, ATP-binding
protein, C-terminal domain; Region: oligo_HPY; TIGR01727"
/db_xref="CDD:211684"
gene complement(307135..308160)
/locus_tag="PM3016_269"
/db_xref="GeneID:11882264"
CDS complement(307135..308160)
/locus_tag="PM3016_269"
/codon_start=1
/transl_table=11
/product="Y4tR protein"
/protein_id="YP_005310396.1"
/db_xref="GI:379718265"
/db_xref="GeneID:11882264"
/translation="MTTRNETKNLPLREEPPLLEIRHLHTHFATEEGIVKAVNDVSLT
VREGETVCIVGESGCGKSVTALSILQLIQGPHGRIAGGEILFGGRDLLQAAPNDIRRI
RGNEIAMIFQEPMTSLHPVLTIGEQLTEPILEHRPVSRRAARLEALDLIRLVGIARPE
AVYASYPHELSGGMLQRIMIAMALSCHPRLLIADEPTTALDVTIQAQILDLLRRIKEE
RGTSILLITHDLGVVAEMADHVVVMYAGRIVEQAPVLELFRHPQHPYTQGLLRAKPVL
HRREPRLYTIPGQVPSLAGLGDFCHFSDRCPQASDLCRSRQPELLPIADGHEAACWLY
GREVSAP"
misc_feature complement(307156..308085)
/locus_tag="PM3016_269"
/note="ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppD; COG0444"
/db_xref="CDD:30793"
misc_feature complement(307405..308085)
/locus_tag="PM3016_269"
/note="The ABC transporter subfamily specific for the
transport of dipeptides, oligopeptides (OppD), and nickel
(NikDE). The NikABCDE system of E. coli belongs to this
family and is composed of the periplasmic binding protein
NikA, two integral membrane...; Region:
ABC_NikE_OppD_transporters; cd03257"
/db_xref="CDD:73016"
misc_feature complement(307975..307998)
/locus_tag="PM3016_269"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(order(307477..307479,307576..307581,
307825..307827,307972..307980,307984..307989))
/locus_tag="PM3016_269"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73016"
misc_feature complement(307825..307836)
/locus_tag="PM3016_269"
/note="Q-loop/lid; other site"
/db_xref="CDD:73016"
misc_feature complement(307624..307653)
/locus_tag="PM3016_269"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73016"
misc_feature complement(307576..307593)
/locus_tag="PM3016_269"
/note="Walker B; other site"
/db_xref="CDD:73016"
misc_feature complement(307558..307569)
/locus_tag="PM3016_269"
/note="D-loop; other site"
/db_xref="CDD:73016"
misc_feature complement(307471..307491)
/locus_tag="PM3016_269"
/note="H-loop/switch region; other site"
/db_xref="CDD:73016"
misc_feature complement(307162..307422)
/locus_tag="PM3016_269"
/note="oligopeptide/dipeptide ABC transporter, ATP-binding
protein, C-terminal domain; Region: oligo_HPY; TIGR01727"
/db_xref="CDD:211684"
gene complement(308168..309112)
/locus_tag="PM3016_270"
/db_xref="GeneID:11882265"
CDS complement(308168..309112)
/locus_tag="PM3016_270"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_005310397.1"
/db_xref="GI:379718266"
/db_xref="GeneID:11882265"
/translation="MALLFPSAPNKAGLPPAPEPLSVPAASLWRQSLHRLRSNRMAML
GCGFLIFIALFCLLGPLFSPYSSGLVNTGQIKAPPSASHWLGTDQLGRDILTRLMQAG
RISITVGLASMTLSVVIGAALGIAAGYYRRGVDQVVMRTADVLMTIPELPLLFIMAAV
LSELKVPADYRLYIVMLLLSLVGWPGLARMVRSEVLSLRERPFMLAAEALGLRDRRKL
FKHLLPNIMPLLLVAATLRVGGAIIGESTLSYFGLGVVPPTPSWGNMIDAANSLIDFQ
RRPWLWVPPGLAIFVTVISINLLGDGLRDALDPKRKRR"
misc_feature complement(308171..309049)
/locus_tag="PM3016_270"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppC; COG1173"
/db_xref="CDD:31366"
misc_feature complement(308873..309034)
/locus_tag="PM3016_270"
/note="N-terminal TM domain of oligopeptide transport
permease C; Region: OppC_N; pfam12911"
/db_xref="CDD:205142"
misc_feature complement(308204..308806)
/locus_tag="PM3016_270"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(308204..308209,308216..308221,
308228..308233,308237..308242,308249..308254,
308318..308323,308360..308365,308372..308383,
308405..308407,308414..308419,308459..308461,
308510..308512,308519..308524,308534..308536,
308540..308545,308552..308554,308558..308560,
308564..308569,308639..308641,308645..308650,
308657..308686,308690..308701,308729..308731,
308744..308749,308756..308761))
/locus_tag="PM3016_270"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(308366..308383,308639..308683))
/locus_tag="PM3016_270"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(308252..308254,308318..308320,
308327..308329,308363..308365,308582..308584,
308639..308641))
/locus_tag="PM3016_270"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(308438..308440,308450..308455,
308471..308509))
/locus_tag="PM3016_270"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(309136..310092)
/locus_tag="PM3016_271"
/db_xref="GeneID:11882266"
CDS complement(309136..310092)
/locus_tag="PM3016_271"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_005310398.1"
/db_xref="GI:379718267"
/db_xref="GeneID:11882266"
/translation="MPSYLLNRLFYIVVTLLGASLLIFALYALTPGDFVDSSPKLTEA
RKLELKALYGLDKPLVARYFTWLGQAVKGDLGFSLQHQKPVTSLIFHFIGNSFLIAFA
SLVLTWAAAIAVGLLSAVRQHSWFDALVTLFVFGAMSLPAFFIGLLAIKIFAVDLGWL
PPGGMITTGSRSTGLAYALEVADHMFLPVVVLALLSVGSLTRYFRTNLLEVIRQDFVR
TARAKGLKERTVLCKHALRSALLPAITLMGFEIPALFGGAIITEKVFNWPGIGSVYMQ
AFAVRDYPVLMGFTMFIAALTVVSNLIADLLYRLADPRIRLK"
misc_feature complement(309142..310092)
/locus_tag="PM3016_271"
/note="ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism];
Region: DppB; COG0601"
/db_xref="CDD:30946"
misc_feature complement(309193..309816)
/locus_tag="PM3016_271"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature complement(order(309193..309195,309202..309207,
309214..309219,309223..309228,309235..309240,
309268..309273,309304..309309,309316..309327,
309346..309348,309355..309360,309400..309402,
309451..309453,309460..309465,309475..309477,
309481..309486,309493..309495,309499..309501,
309505..309510,309643..309645,309649..309654,
309661..309690,309694..309705,309736..309738,
309751..309756,309763..309768))
/locus_tag="PM3016_271"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature complement(order(309310..309327,309643..309687))
/locus_tag="PM3016_271"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature complement(order(309238..309240,309268..309270,
309277..309279,309307..309309,309523..309525,
309643..309645))
/locus_tag="PM3016_271"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature complement(order(309379..309381,309391..309396,
309412..309450))
/locus_tag="PM3016_271"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene complement(310115..311848)
/locus_tag="PM3016_272"
/db_xref="GeneID:11882267"
CDS complement(310115..311848)
/locus_tag="PM3016_272"
/codon_start=1
/transl_table=11
/product="ABC transporter substrate-binding protein"
/protein_id="YP_005310399.1"
/db_xref="GI:379718268"
/db_xref="GeneID:11882267"
/translation="MKPQPWKTALAVMTVTALLTGCTAPESGGTDVPAAQQPAGSSAQ
PEIVKDAVIPASDKSKSPAAATARTDTVVVSLTEPGGVFNPYFYQNGYDGNVTSVMFS
PLVNIDENGKPVPDLAEKWEISPDGLVYTYYLRPNLKFSDGSPLTAEDVAFTLTLLHD
KAYDGETDLTETHIKGGQAYKEGKADAIEGIQVIDPLTIRITTEKVNARSLLLLGGQP
LSKAYYGKNYAPGQLDYLKSLHAKPLATGPYKYDQYIPGQEVRFTANEHYYGGKPKVG
HFIYKTTEGDATQFFQTGETDYSSFTANPDNLDLLKQLGYANINIYTSTAYSYIKFNH
SKAPFKDKRVRQAFVYGLDRAKTVQAAYQGYAQIANVPVSPVSWAYTEEGINPYPYDP
EKAKKLLDEAGWKPGADGVREKDGQKLIVRYFTTKGAVSDILIPIAKENYKALGIQLE
SELMDYNALLARTTKGDHDLASFSTTLLPDPSDGVNQFSSKAGGSFTGTNGYSNPKVD
ELIEKGTATLDLAARKAAYAELYKEIAEDPPFIFLAYRKILSAHNARVEGFRPNGYTG
LSSSLPNLEIK"
misc_feature complement(310172..311623)
/locus_tag="PM3016_272"
/note="The substrate-binding domain of an ABC-type
nickel/oligopeptide-like import system contains the type 2
periplasmic binding fold; Region:
PBP2_NikA_DppA_OppA_like; cd00995"
/db_xref="CDD:173853"
misc_feature complement(310361..311515)
/locus_tag="PM3016_272"
/note="Bacterial extracellular solute-binding proteins,
family 5 Middle; Region: SBP_bac_5; pfam00496"
/db_xref="CDD:201265"
gene 312094..313062
/locus_tag="PM3016_273"
/db_xref="GeneID:11882268"
CDS 312094..313062
/locus_tag="PM3016_273"
/codon_start=1
/transl_table=11
/product="putative RNA methylase"
/protein_id="YP_005310400.1"
/db_xref="GI:379718269"
/db_xref="GeneID:11882268"
/translation="MNVKEESRPGGASPEAAACLYTYACHEDELELCGLELRELFGCP
AEGGWLRSPRVLDPGRSPFLKQRLDVRFEADSLPALLERLPELELGGGTFKVVYAEAG
LGADYGGQRALERQAGARIRGRADMRTPQHVLGLACADGRWLLGPLHRAEAHWLRHAQ
KPQNYSTALSTRVARAVVNIAVPEGAGRRLIDPCCGMGTVLVEALSMGIDSEGCDINP
LAVRGARANLRHFGFAESAVRLADMTGVAGRYDAAVLDLPYNLCSKLSAEEQAGLLSG
ARRLAERAVIVATEEIGAEIAAAGFRIAGHAVLRKGSFSRQVYLGL"
misc_feature 312658..312933
/locus_tag="PM3016_273"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(312670..312690,312736..312741,312814..312822,
312859..312861)
/locus_tag="PM3016_273"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 313145..313603
/locus_tag="PM3016_274"
/db_xref="GeneID:11882269"
CDS 313145..313603
/locus_tag="PM3016_274"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310401.1"
/db_xref="GI:379718270"
/db_xref="GeneID:11882269"
/translation="MNGFWHDLRHHPTLLGAFLLGIGTIGMLDGIIFHQLLQWHSVNM
HTDRQHQIISDGLFHLAVTVVMVWGAVVLWNSGRADEPGARKLFLSGLFTGAGLFNFV
EGIINHHVLQLHHVHPGDYQTAYDLAYDASGLLLLLVGLVLYRGSQSRAR"
misc_feature 313196..313540
/locus_tag="PM3016_274"
/note="Predicted membrane protein (DUF2243); Region:
DUF2243; cl01783"
/db_xref="CDD:154585"
gene 313882..316994
/locus_tag="PM3016_275"
/note="Cph2"
/pseudo
/db_xref="GeneID:11882270"
gene 317293..318111
/locus_tag="PM3016_277"
/db_xref="GeneID:11882271"
CDS 317293..318111
/locus_tag="PM3016_277"
/codon_start=1
/transl_table=11
/product="serine/threonine protein kinase"
/protein_id="YP_005310402.1"
/db_xref="GI:379718271"
/db_xref="GeneID:11882271"
/translation="MLQYFRDVYTSWIDYPLREGRRLGGRYEIVRFLGMGSYGLTYLC
RDSREAGAEVVVKMAKPSKKELGRRLLQREHEILKKLQHPRIPAAGGTFEERGRLCLV
TEYIAGETVEDLIFREERRFTEEVSLLFMRELLEIVAFVHGQGYVHLDVRIPNVMVRG
GDIHLIDFGLARRIGDTEGQEPFENDEMRRRRTPEAQSDLYAAGHFLLFLLYSTYRAD
WNSPEAGWEEELTVSEGTRTLIRRLLQEEPPYADAVICMAELDRVLGALQRSSP"
misc_feature 317371..>317826
/locus_tag="PM3016_277"
/note="Serine/Threonine protein kinases, catalytic domain;
Region: S_TKc; smart00220"
/db_xref="CDD:197582"
misc_feature 317389..318036
/locus_tag="PM3016_277"
/note="Catalytic domain of Protein Kinases; Region: PKc;
cd00180"
/db_xref="CDD:173623"
misc_feature order(317389..317403,317413..317415,317455..317457,
317461..317463,317551..317553,317599..317610,
317620..317622,317626..317628,317740..317742,
317746..317748,317752..317757,317761..317763,
317791..317793,317800..317802,317866..317871)
/locus_tag="PM3016_277"
/note="active site"
/db_xref="CDD:173623"
misc_feature order(317389..317403,317413..317415,317455..317457,
317461..317463,317551..317553,317599..317610,
317620..317622,317740..317742,317746..317748,
317752..317757,317761..317763,317791..317793)
/locus_tag="PM3016_277"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:173623"
misc_feature order(317401..317403,317620..317622,317626..317628,
317740..317742,317746..317748,317752..317754,
317800..317802,317866..317871)
/locus_tag="PM3016_277"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:173623"
misc_feature order(317788..317808,317866..317871)
/locus_tag="PM3016_277"
/note="activation loop (A-loop); other site"
/db_xref="CDD:173623"
gene complement(318133..318312)
/locus_tag="PM3016_278"
/db_xref="GeneID:11882272"
CDS complement(318133..318312)
/locus_tag="PM3016_278"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310403.1"
/db_xref="GI:379718272"
/db_xref="GeneID:11882272"
/translation="MLKHLLQKILHSVTGSKHSNRRYSSSHRFNRPMRRGSSSDRYGS
GYGQRYYKNRHGSSS"
gene complement(318435..318626)
/locus_tag="PM3016_279"
/db_xref="GeneID:11882273"
CDS complement(318435..318626)
/locus_tag="PM3016_279"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310404.1"
/db_xref="GI:379718273"
/db_xref="GeneID:11882273"
/translation="MTKRGAGVAFCALSAFLTGVYELSAAIYPGGTPSGTLTFWSRTA
LIVGIIYLILCEIREWDKD"
gene complement(318713..321154)
/locus_tag="PM3016_280"
/db_xref="GeneID:11882274"
CDS complement(318713..321154)
/locus_tag="PM3016_280"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_005310405.1"
/db_xref="GI:379718274"
/db_xref="GeneID:11882274"
/translation="MQKPFFKPWGIAGLTTALLLTSASPLAAMTPDAASKQTSAVLLP
AAGPSAPAKEALPAASDAPVNTAVSRERAIELAGTYVTIPTDYKLQSVNYQVTPFSGG
SARGAWHLSFVKQDAKGYYGSISVTVDSNNGGLLSYQIYDGDPDRKPSFPPQVSLDKA
KTIAEAHLAKMLPKEQSQLTYALEDEKNFRKPLSGETQYPLRWVRSVNGIPFYGNEVR
ITVDGDGRIISYSKQWDESLAFAPSGTPVAADKAADTLQEATNPRLQYVTPYNAESGA
QQLYVAYTADPLMVDAATGEVLTLSGGKPAPAVKPVPLSDKPLAELPSAPLKLTKEQA
VERITGKFTLPKEAKLEDASYREYTDPRTNRTTSAWDLRWSVGGSPENGGTMIYASVD
SSTGVILAFSPNDFRPLAASTDTAGADLTSDELKSRAEKHLREILPAYVHELYLDPQN
EASPEWTSKLASMPYYPVNYRRIVGGIPTEYESVSLGLDRKTGEIKEFHSNLSTIPYP
AEPRKVIAEDEARKLLLGQYDIKLQYVIDYKGKPSPYGYDGAGGMPVEKYNVMAAAGE
IAPTGGEKLQTRLVYGLVPKFTEREQQLFLDGESGKWRSRESGRTVDPFAAPPADIAG
HWAEEALNLMIDYGALEVTDGKVQPDGLITRGEMVKMLLAAVNGGYMPLSAGAYAERA
ASFADVAKDSKYFAYVENAADRGLIDRTSGTFQPDASLSRADLAELLVRAMGYRKLAQ
TEGLFVLQATDLENGAAANPGAVALVNGLGIMTLEDGKFRPKTEMTRAQAATAFYKYL
QVRAELQDSPVNPRW"
misc_feature complement(318977..319105)
/locus_tag="PM3016_280"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature complement(318782..318907)
/locus_tag="PM3016_280"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene complement(321263..322036)
/locus_tag="PM3016_281"
/db_xref="GeneID:11882275"
CDS complement(321263..322036)
/locus_tag="PM3016_281"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310406.1"
/db_xref="GI:379718275"
/db_xref="GeneID:11882275"
/translation="MRQNLPLTLLLTLLGTIGAAAILPYQLALLGGKLPDTGGLPLPA
ALALGVVQQAVLLFILTAAALKLQERTLLDLPYLRAWVSRTPQPPVSRSWMAIGIAGS
LIGCLLIALLDAYVFTPAIEAPQADPIPRPAWWQGLLAMFYGGITEELLLRLFAMTLI
VWLLSKITGRTGARIPSGYFWCAILLSTLLFGIGHLPAAAGLYGTLNGVIVARILILN
GLLGIWFGYLYWKKGLEYAMVSHMSADLCLHVVFASISS"
misc_feature complement(321299..321649)
/locus_tag="PM3016_281"
/note="CAAX protease self-immunity; Region: Abi;
pfam02517"
/db_xref="CDD:202269"
gene complement(322033..322653)
/locus_tag="PM3016_282"
/db_xref="GeneID:11882276"
CDS complement(322033..322653)
/locus_tag="PM3016_282"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310407.1"
/db_xref="GI:379718276"
/db_xref="GeneID:11882276"
/translation="MKHYLPSLTLFILAVALSFYAYPYMPDQMAVHFRFDGTPDGFMT
KFWALATAPLFMLLLMAAALLVPVNPSDARTLSAQTLVRETSIGLLFGAHIAIILYAV
GYEFDMAKYVTILMGIVFLILGNYMPRFQPNRYIGIRTPWTLASEENWRRTHRTAGKI
WFIGGLLMLACLLLPEGTTAFGFLFVLIAVMGLTLAVTFYHSRGRA"
misc_feature complement(<322513..322632)
/locus_tag="PM3016_282"
/note="Protein of unknown function (DUF1648); Region:
DUF1648; pfam07853"
/db_xref="CDD:203782"
misc_feature complement(322051..322626)
/locus_tag="PM3016_282"
/note="Predicted integral membrane protein [Function
unknown]; Region: COG5658"
/db_xref="CDD:35217"
misc_feature complement(322057..322272)
/locus_tag="PM3016_282"
/note="SdpI/YhfL protein family; Region: SdpI; pfam13630"
/db_xref="CDD:205807"
gene complement(322650..322883)
/locus_tag="PM3016_283"
/db_xref="GeneID:11882277"
CDS complement(322650..322883)
/locus_tag="PM3016_283"
/codon_start=1
/transl_table=11
/product="transcriptional repressor SdpR-like protein"
/protein_id="YP_005310408.1"
/db_xref="GI:379718277"
/db_xref="GeneID:11882277"
/translation="MTAGEIADKFDMSKPSISHHLNLLKQAELVWDERRGQHIVYSLN
LTVFQELMKWLLAFPLPAEERTAPASKERKDPT"
misc_feature complement(322752..>322883)
/locus_tag="PM3016_283"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature complement(order(322761..322769,322782..322790,
322806..322811,322815..322820,322827..322832,
322836..322847,322872..322880))
/locus_tag="PM3016_283"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature complement(order(322869..322871,322878..322880))
/locus_tag="PM3016_283"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
gene complement(323847..324695)
/locus_tag="PM3016_284"
/db_xref="GeneID:11882278"
CDS complement(323847..324695)
/locus_tag="PM3016_284"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_005310409.1"
/db_xref="GI:379718278"
/db_xref="GeneID:11882278"
/translation="MPSSKRTYTPAPSAVPGMELKLYYCGAEDCTPGHSWGPGLKDHY
KIHLVRRGRGIFRRGGRTYAVTAGQGFLIRPQDVAYYEADADEPWSYAWAAFNGLQAD
SFLSRAGLGPESPVFTCSDEESGGLWRLIEEMIGAGSRPASRDLRLLSSLYALLGGLV
DRAENARNTVLPGGGSPAGEGYVARAVAFIETNYSRSMTVEELAAELGLDRKYAARLF
KEALGVPPRQFLLQYRMEQAGLLLRRESLSVAEVAHSVGYRDPLLFSRMFKKVKGCSP
QAYRNR"
misc_feature complement(324279..324623)
/locus_tag="PM3016_284"
/note="AraC-like ligand binding domain; Region:
AraC_binding; pfam02311"
/db_xref="CDD:145456"
misc_feature complement(323850..324209)
/locus_tag="PM3016_284"
/note="AraC-type DNA-binding domain-containing proteins
[Transcription]; Region: AraC; COG2207"
/db_xref="CDD:32389"
misc_feature complement(324003..324128)
/locus_tag="PM3016_284"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature complement(323853..323963)
/locus_tag="PM3016_284"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 324933..325925
/locus_tag="PM3016_285"
/db_xref="GeneID:11882279"
CDS 324933..325925
/locus_tag="PM3016_285"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310410.1"
/db_xref="GI:379718279"
/db_xref="GeneID:11882279"
/translation="MTYLAESNRYESMKYNRSGRSGLRLPAISLGLWHNFGGIDTYEN
GRAMVRRAFDLGITHFDLANNYGPPPGSAEENFGKILEQDLAPYRDEIIISTKAGYYM
WPGPYGEWGSKKYLISSLDQSLKRMGLDYVDIFYHHRPDPNTPLEETMSALDLVVRQG
KALYVGISNYRPEEAKEAIGILRRLGTPCLIHQPSYSMLNRWVEDGLLDVLEEEGVGS
IAFSPLHKGILTDRYLNGIPSDSRAAGPSVFLRPEELTDSVLGKVRELNAIAQERGQK
LSQMALAWVLRGGRVTSALIGASKVSQIEDAVGAVANLEFSGEELERIERILQG"
misc_feature 324969..325916
/locus_tag="PM3016_285"
/note="Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion];
Region: Tas; COG0667"
/db_xref="CDD:31011"
misc_feature 324975..325913
/locus_tag="PM3016_285"
/note="Aldo-keto reductases (AKRs) are a superfamily of
soluble NAD(P)(H) oxidoreductases whose chief purpose is
to reduce aldehydes and ketones to primary and secondary
alcohols. AKRs are present in all phyla and are of
importance to both health and industrial...; Region:
Aldo_ket_red; cd06660"
/db_xref="CDD:119408"
misc_feature order(325023..325031,325113..325115,325128..325130,
325221..325223,325344..325349,325434..325439,
325509..325511,325593..325610,325764..325766,
325815..325826,325839..325841,325848..325853)
/locus_tag="PM3016_285"
/note="active site"
/db_xref="CDD:119408"
misc_feature order(325113..325115,325128..325130,325221..325223,
325344..325346)
/locus_tag="PM3016_285"
/note="catalytic tetrad [active]"
/db_xref="CDD:119408"
gene 325958..326086
/locus_tag="PM3016_286"
/db_xref="GeneID:11882280"
CDS 325958..326086
/locus_tag="PM3016_286"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310411.1"
/db_xref="GI:379718280"
/db_xref="GeneID:11882280"
/translation="MLRLTAFCLCIDMPGELTGMENLCGKPIAKTNHISYYTNIIS"
gene 326107..326811
/locus_tag="PM3016_287"
/db_xref="GeneID:11882281"
CDS 326107..326811
/locus_tag="PM3016_287"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310412.1"
/db_xref="GI:379718281"
/db_xref="GeneID:11882281"
/translation="MRMERIDGLHGITFFPVWFPVNCYLVEEEAELTLIDAALPMSAK
GILAAAERIGKPITRIVLTHAHDDHVGALDALHAALPDAKVLISARDARLLGGDRTLD
PGEPQMPIRGGVPKGVQTRADITLADGDRIGSLQAVSVPGHTPGSMAFLDTRSGALIA
GDAFQTRGGVAVSGRLVPWFPFPAFATWNKEAAVESARRLRDLKPSVLAVGHGRMLKQ
PLAAMDRAIQAAAAAR"
misc_feature 326107..326763
/locus_tag="PM3016_287"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
misc_feature 326170..326742
/locus_tag="PM3016_287"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
gene 326830..327414
/locus_tag="PM3016_288"
/db_xref="GeneID:11882282"
CDS 326830..327414
/locus_tag="PM3016_288"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_005310413.1"
/db_xref="GI:379718282"
/db_xref="GeneID:11882282"
/translation="MGRAGLDSGSVLQAAAALADREGYEGVTLAALAAELGVKTPSLY
NHISGLPGLRKELAVYGLVQLRHRLAEAVAGKAGSRAVHATGLAYVEFARRHPGLYEG
IMRAPDVMDAEVEAAGDALLHLLLQVLDAYGLEREDALHTVRGLRSLLHGFATLEMRG
GFGMSLDNNKSLDLLLRTYLAGLEQSVQAAEAGP"
misc_feature 326860..>326967
/locus_tag="PM3016_288"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
misc_feature 327076..327315
/locus_tag="PM3016_288"
/note="WHG domain; Region: WHG; pfam13305"
/db_xref="CDD:205485"
gene 327905..329860
/locus_tag="PM3016_289"
/db_xref="GeneID:11882283"
CDS 327905..329860
/locus_tag="PM3016_289"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310414.1"
/db_xref="GI:379718283"
/db_xref="GeneID:11882283"
/translation="MRRSLDTKGQPKSSRSKLARAGRNGVILSALLIVPVLLVFGMEF
IQRGSWEDTWTWISGNRYLFALNAVMTFLVFSLLYSLIGSLLPAVGVSTLLLMLVSMI
SYFKQKLIGEPFFPWDIFLNKESMNILPLVTSKAAMVRLGAVFGTVILIFLLSRWVPR
LRPRPVTRLSLALMSLFILHSFGVQSPWTLKVMSAAGANEIVWNQGQNYGTNGLSLAF
TMNVKNTIVPKPPGYSEMSIASMAERLNELVGASKAKAAAGEKPNVVFIMNEAFWDPT
LLPGVKFSEDPLPTVHRLQEESTSGYLLSPQFGGGTSNVEFEVLTGQSMSFLPAGSVP
YQQYISKPIMSMASYFKGQGYRSAAIHSYEGWFWNREQVYKHMGFDSFLSKEGMTSPE
YKGAFISDDEVSRSILKEIDTNEEPTFIYAVTMQNHGPYDDKRYGETEISVEGELTDS
ARDVLQTYTQGIRDADRSLQLLIDSLEKSGEPTVIVFFGDHLPMMGYDYDVYVQSNFI
HTGKAEQWSLEEQKRMHSVPFVMWSNTDLPKEEVPVLSNSFLSAYVLDQLDLPIPAAW
AYNVELAKKTPGLLRSLVVDSNQGLHTKVPPSAEEDVEKYRELQYDEMFGKQYLAKYT
ESHGLTRHEGPVPGEDTAYAASERAAP"
misc_feature 327977..329812
/locus_tag="PM3016_289"
/note="Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane]; Region: MdoB; COG1368"
/db_xref="CDD:31559"
misc_feature 328688..329593
/locus_tag="PM3016_289"
/note="Sulfatase; Region: Sulfatase; pfam00884"
/db_xref="CDD:201490"
gene 330030..331496
/locus_tag="PM3016_290"
/db_xref="GeneID:11882284"
CDS 330030..331496
/locus_tag="PM3016_290"
/codon_start=1
/transl_table=11
/product="protein MtlA"
/protein_id="YP_005310415.1"
/db_xref="GI:379718284"
/db_xref="GeneID:11882284"
/translation="MSTTATQPASAGGGIRVKVQRFGRFLSGMVMPNIGAFIAWGLIT
ALFIPTGWFPNEDLAKLVGPMITYLLPILIGYTGGTMIHGARGGVIGAVTTMGVIIGT
DIPMFLGAMIVGPFAAWVLKQFDRAVEGRIRSGFEMLVNNFSAGIIGALLAVIAYLFV
GPVVQVFSKALASGVQGLVNAGLLPLANVLIEPAKILFLNNAINHGVLSPIALDQAAK
TGQSMLFMLESNPGPGLGILLAYWLVGRGSVKQSAPGAVIIHFFGGIHEIYFPYILMN
PRLILAVIAGGITGTFTFGLFHAGLVAPPSPGSIFAFMAMAPKGGLLPVFSGVLTGAA
ASFAVAALLLKTTKQEEQEESLEQAAARMKEMKGTQPAAAVPAAEAAAASEAAAAPEV
SRKAKEDVRKIVFSCDAGMGSSAMGASILRKKLKDAGADVTVINTAISEIPGDADIVI
THRSLTDRAKAQAPKAEHISIDNFMKSPEYDELTKRLA"
misc_feature 330072..331490
/locus_tag="PM3016_290"
/note="Phosphotransferase system, mannitol-specific IIBC
component [Carbohydrate transport and metabolism]; Region:
MtlA; COG2213"
/db_xref="CDD:32395"
misc_feature 330081..331016
/locus_tag="PM3016_290"
/note="Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
transport and metabolism]; Region: PtsG; cl00557"
/db_xref="CDD:200670"
misc_feature 331230..331490
/locus_tag="PM3016_290"
/note="PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of
the mannitol-specific phosphoenolpyruvate:carbohydrate
phosphotransferase system (PTS). In this system, EII is a
mannitol-specific permease with two cytoplasmic domains
(IIA and IIB) and a transmembrane...; Region:
PTS_IIB_mannitol; cd05567"
/db_xref="CDD:99909"
misc_feature 331245..331271
/locus_tag="PM3016_290"
/note="active site"
/db_xref="CDD:99909"
misc_feature order(331248..331259,331263..331271)
/locus_tag="PM3016_290"
/note="P-loop; other site"
/db_xref="CDD:99909"
misc_feature 331248..331250
/locus_tag="PM3016_290"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:99909"
gene 331578..333638
/locus_tag="PM3016_291"
/db_xref="GeneID:11882285"
CDS 331578..333638
/locus_tag="PM3016_291"
/codon_start=1
/transl_table=11
/product="PRD domain-containing protein"
/protein_id="YP_005310416.1"
/db_xref="GI:379718285"
/db_xref="GeneID:11882285"
/translation="MRVSTRQRQIIQLLLLRSDGITAGEIAEEIKVSTRTVHRELDEL
EAVLAEYGVELLKKAGKGLLLQAPGEELEALHRRLFEAVPEDYTAEDRKALILFMLLQ
AEEPVKLFALAHSLKVTVPTVTNDLDELEGWLARSGLTLVRRRGYGVELTGEEDGLRS
MLSLLAMQHLDEADLFGRPEDLAREPVKRRLLELIGRPHLKAAEDALWAADRLWLKLL
AEHEYARLLIRMSVMLGRIREGRQIREVRQEQQLPEHLLKLAEELSPALGGLPPEEVR
YLAGLLQLADTPDRHGLVPEANPGSMDLAKRLVSALEAELQAGFGEDRQLLEGLTSHL
ESALPRIREGFQIRNPLLSQIRRDYDRLFVQIREAADTVLPGLPIPDEEIGFLVMHFG
ASLERLKSLRRSVRAIIVCTSGIGSSKMLAIRLNKELPQVEIISHASWYEAVRIPEEE
YDLIISTVDLPLEEHRYIKLSPLLTTEESERLRRFIREVTLQRGPGRGGVGSPPAESL
ERLHRLQAYLNEIVSIVDQFRVHGPLEARGGLRGILEEACGRVRQRAEITDLPAVVEL
LLERQKMSSQVIPDTGIALFHTRSGQIGTPSFTLFTLQEELPLKSGEGAGVKHLLLML
GPRELSKESLEVLSEISSFLLDAEFVELLKQGSEEEIRLELSTKLTEFFESIYKTDKR
RIIR"
misc_feature 331629..333041
/locus_tag="PM3016_291"
/note="Transcriptional antiterminator [Transcription];
Region: BglG; COG3711"
/db_xref="CDD:33506"
misc_feature <331638..331727
/locus_tag="PM3016_291"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
misc_feature 331851..332018
/locus_tag="PM3016_291"
/note="HTH domain; Region: HTH_11; pfam08279"
/db_xref="CDD:116863"
misc_feature 332493..332759
/locus_tag="PM3016_291"
/note="PRD domain; Region: PRD; pfam00874"
/db_xref="CDD:201484"
misc_feature 332790..333041
/locus_tag="PM3016_291"
/note="PTS_IIB_bgl_like: the PTS (phosphotransferase
system) IIB domain of a family of sensory systems composed
of a membrane-bound sugar-sensor (similar to BglF) and a
transcription antiterminator (similar to BglG) which
regulate expression of genes involved...; Region:
PTS_IIB_bgl_like; cd05568"
/db_xref="CDD:99910"
misc_feature order(332808..332819,332823..332831)
/locus_tag="PM3016_291"
/note="P-loop; other site"
/db_xref="CDD:99910"
misc_feature order(332808..332810,332814..332819,332826..332831)
/locus_tag="PM3016_291"
/note="active site"
/db_xref="CDD:99910"
misc_feature 332808..332810
/locus_tag="PM3016_291"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:99910"
misc_feature 333204..333563
/locus_tag="PM3016_291"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cl00163"
/db_xref="CDD:206872"
gene 333635..334072
/locus_tag="PM3016_292"
/db_xref="GeneID:11882286"
CDS 333635..334072
/locus_tag="PM3016_292"
/codon_start=1
/transl_table=11
/product="Protein-N-phosphohistidine--sugar
phosphotransferase"
/protein_id="YP_005310417.1"
/db_xref="GI:379718286"
/db_xref="GeneID:11882286"
/translation="MSILSPNKVLLNAKAQDKTEAIRIAGQLLVDAGHAAPGYIEKML
EREEALSTYMGGGLAIPHGTKDSKEMISSAGLSIVLFPDGVDFGGDEPAHLVIGIAAA
GSDHLGILTNVAMICSDEANMEQILKASSKEEIIRIFEEGMGE"
misc_feature 333644..334051
/locus_tag="PM3016_292"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:29266"
misc_feature order(333770..333772,333818..333820)
/locus_tag="PM3016_292"
/note="active site"
/db_xref="CDD:29266"
misc_feature 333818..333820
/locus_tag="PM3016_292"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29266"
gene 334069..335223
/locus_tag="PM3016_293"
/db_xref="GeneID:11882287"
CDS 334069..335223
/locus_tag="PM3016_293"
/codon_start=1
/transl_table=11
/product="Mannitol dehydrogenase domain-containing
protein"
/protein_id="YP_005310418.1"
/db_xref="GI:379718287"
/db_xref="GeneID:11882287"
/translation="MKAVHFGAGNIGRGFIGLLLSRAGYEVCFVDVNEMLVSELQHRG
EYTVSLASDGRETYHVTGVTALHGGDTDRVAEAVAGADLVTTAVGVNILKHIAEGIAK
GVKLRLQAGGGPQHLIACENAIGGSAQLQAHVFGYLSEEEQRLAEGRLAFPNAAVDRI
VPLQHHEDPLHVTVEPFYEWVVDRSQTIPGLPEIPGVHYADGLEPYIERKLFTVNTGH
CCAAYMGFLHGKSTIQESMADERIAAEVRAVLGETGRLLTAKHGFDAGEHQAYIEKTM
ERFRNPHLTDEVARVGRSPVRKLSPNDRLVRPALGLHDMDVRPAALARAMAAALKFRA
EDDPEVQQIRAELEEHGLSAAVSRFTSLAADHPVHAIIVEQYEALSRELA"
misc_feature 334069..335208
/locus_tag="PM3016_293"
/note="mannitol-1-phosphate 5-dehydrogenase; Provisional;
Region: PRK02318"
/db_xref="CDD:179414"
misc_feature 334069..334434
/locus_tag="PM3016_293"
/note="Mannitol dehydrogenase Rossmann domain; Region:
Mannitol_dh; pfam01232"
/db_xref="CDD:144722"
misc_feature 334519..335169
/locus_tag="PM3016_293"
/note="Mannitol dehydrogenase C-terminal domain; Region:
Mannitol_dh_C; pfam08125"
/db_xref="CDD:149275"
gene complement(335830..336552)
/locus_tag="PM3016_294"
/db_xref="GeneID:11882288"
CDS complement(335830..336552)
/locus_tag="PM3016_294"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310419.1"
/db_xref="GI:379718288"
/db_xref="GeneID:11882288"
/translation="MFVTCRSFLLLSLALLLPMPGCASRVSPAPSAPEPAIITLQVSA
LALNRIPVDPPAPLPAVTPIEPYAIIANRALREDVIELRIAGNSADAVTSFLRRGDRL
YEIGAAGYLPLVDPGIIGIREVYAFFRKLIKISGFCGANCPVTFYVDPTPETPVLFLR
IDAHGVEADADGNGTIDVIGTAGTAAESTLYTLEEDTLAASSLNRLLGAVSVRYDEAG
RFFWAERPGGPARIRITDHPIH"
gene 336798..338114
/locus_tag="PM3016_295"
/db_xref="GeneID:11882289"
CDS 336798..338114
/locus_tag="PM3016_295"
/codon_start=1
/transl_table=11
/product="deoxyguanosinetriphosphate triphosphohydrolase"
/protein_id="YP_005310420.1"
/db_xref="GI:379718289"
/db_xref="GeneID:11882289"
/translation="MDLRKLRLDEPSSGTFSEERDEYERDYARLIQSPAFRRLQGKSQ
VFGAGSGDYYRTRLTHSLEVSQIARETARRMGKLYPFLGRREHPGLILDPAVVECASL
AHDLGHPPFGHKGEEVLDRLLAKEHGMKYEGNAQNFRILMFLEKRAGSDSGLDLTAAV
LLAINKYPYCIEAPGRLKGCYGMEWEGISELRRKWNMPTGCSTLEAQLMDLCDDIAYS
THDIEDGIRAGKIGMNRTFFESERLIEHLVQEIVDDQGNLEVGWESVDIEGMVRRVLE
DYLAQWEEIYEQCGRESSRTRREMKARWVSTFAGRVGIIDDTARGWKKVTFVRDGQQD
LELLRTMEILKKLAWVTLIKDFRVQRLQKRSEIMIKRLWDSFKVPEQGRMIIPPDWID
NYKAHQGKWTWPRFIADYISGMTDAYAEKVYAELFASKSGSIYEMD"
misc_feature 336879..338081
/locus_tag="PM3016_295"
/note="deoxyguanosinetriphosphate triphosphohydrolase,
putative; Region: dGTP_triPase; TIGR01353"
/db_xref="CDD:162314"
misc_feature 336960..337481
/locus_tag="PM3016_295"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(336975..336977,337107..337112,337434..337436)
/locus_tag="PM3016_295"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 337110..337112
/locus_tag="PM3016_295"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 337803..338072
/locus_tag="PM3016_295"
/note="Phosphohydrolase-associated domain; Region:
HD_assoc; pfam13286"
/db_xref="CDD:205466"
gene 338362..339195
/locus_tag="PM3016_296"
/db_xref="GeneID:11882290"
CDS 338362..339195
/locus_tag="PM3016_296"
/codon_start=1
/transl_table=11
/product="Protein-glutamine gamma-glutamyltransferase"
/protein_id="YP_005310421.1"
/db_xref="GI:379718290"
/db_xref="GeneID:11882290"
/translation="MIVLPESSFSVSAAVQMLPPLEREIYEQKHGSPNAFHYPSLAAL
LFELKLRSAIVEAAVQLQKSDAEFESFKDSRCSEAYWIRTEGGGFRQKPGVRTSEAIR
DIYINGKAYAFECATAVIIVLYKAVLETIGEEAFDRLFRYLFLMSWNHDSLLHLITVY
GKGEVYPGDVQYVKNPDVDPKAIEWQGENIVKLRGDRYFGHGVGIGDVDMFIRKLNRH
RLPGSTVSAYLLDEATYPNFLALFEAAGTGQLPSYLPQLPMRSHGLIVSRIGTRTAIY
S"
misc_feature 338362..339189
/locus_tag="PM3016_296"
/note="transglutaminase; Provisional; Region: tgl;
PRK03187"
/db_xref="CDD:179550"
gene 339282..339443
/locus_tag="PM3016_297"
/db_xref="GeneID:11882291"
CDS 339282..339443
/locus_tag="PM3016_297"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310422.1"
/db_xref="GI:379718291"
/db_xref="GeneID:11882291"
/translation="MPETNDSRERTAQSEPAGDSFSESREYQHERNPVAAAQKQMASQ
ETAGLLDEQ"
gene complement(339554..340297)
/locus_tag="PM3016_298"
/db_xref="GeneID:11882292"
CDS complement(339554..340297)
/locus_tag="PM3016_298"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_005310423.1"
/db_xref="GI:379718292"
/db_xref="GeneID:11882292"
/translation="MTRTLVISDIHGCITELQALLRQMAYRPDADRLLLLGDYVDRGP
DSRAVVEEVMRLVRGGAEALRGNHDQRFVDLMLGRPEHADKFVKHGGLQTLQSYGITE
LPEGPADPLLAEKLGAAAEAVRSRFGDHLAFLDSLPHYAEDDRHIYAHAGLHPQYTPW
HEQPLREFLLVREDFLPHPVTADRTVVFGHTKTVDIHGTPEVWFAGDKIGIDGGCPFG
FRLNGLEIMESGAYAVHHVLSSCRWVLKD"
misc_feature complement(339725..340291)
/locus_tag="PM3016_298"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature complement(339626..340282)
/locus_tag="PM3016_298"
/note="phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase domain;
Region: MPP_PPP_family; cd00144"
/db_xref="CDD:163613"
misc_feature complement(order(339728..339730,339788..339790,
339848..339850,340094..340099,340172..340174,
340184..340186,340265..340267,340271..340273))
/locus_tag="PM3016_298"
/note="active site"
/db_xref="CDD:163613"
misc_feature complement(order(339728..339730,339848..339850,
340097..340099,340184..340186,340265..340267,
340271..340273))
/locus_tag="PM3016_298"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163613"
gene complement(340380..340877)
/locus_tag="PM3016_299"
/db_xref="GeneID:11882293"
CDS complement(340380..340877)
/locus_tag="PM3016_299"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310424.1"
/db_xref="GI:379718293"
/db_xref="GeneID:11882293"
/translation="MTRRRLTWTALSLGLYGLLTLGAGLLAAEADPADQGSLYPMAAN
LLTGPQFLVKGLLGEGNIITYRFNLLPFLLGGLVWLLLTFLTLRRLERKPDAHGLMGL
GFTLAGVEIVLALLTVGFVMTVPSLFEPFLRLAGGLLIWGLFGLLLIGIGLIRYVQEL
SGSRG"
gene 341194..341883
/locus_tag="PM3016_300"
/db_xref="GeneID:11882294"
CDS 341194..341883
/locus_tag="PM3016_300"
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="YP_005310425.1"
/db_xref="GI:379718294"
/db_xref="GeneID:11882294"
/translation="MAPEQETEIYKAIKQAIIEQKLRPNTQLVEEVVAESFGVSRTPV
RNVVRRLASEKLVTIIPYKGAFVSCPTIQEAREVFDMRRVLESAVIHKVCKLLTEEQY
GQLEKLLEDEREAQGKGDIFGAIQITGDFHLKLAGFSGSSYYSRFLEELVSLTYVIIA
LYGEQKTKCCQDHRTILDYIRSGDAEKAERAMLAHLREMEEALRFDQAGNQSLSLTEI
FKSGMRHTVRR"
misc_feature 341215..341829
/locus_tag="PM3016_300"
/note="Transcriptional regulators [Transcription]; Region:
FadR; COG2186"
/db_xref="CDD:32369"
misc_feature 341215..341397
/locus_tag="PM3016_300"
/note="Winged helix-turn-helix (WHTH) DNA-binding domain
of the GntR family of transcriptional regulators; Region:
WHTH_GntR; cd07377"
/db_xref="CDD:153418"
misc_feature order(341278..341280,341281..341286,341308..341322,
341326..341331,341338..341340,341368..341373,
341377..341388)
/locus_tag="PM3016_300"
/note="DNA-binding site [nucleotide binding]; DNA binding
site"
/db_xref="CDD:153418"
misc_feature 341422..341784
/locus_tag="PM3016_300"
/note="FCD domain; Region: FCD; pfam07729"
/db_xref="CDD:203742"
gene 341998..342741
/locus_tag="PM3016_301"
/db_xref="GeneID:11882295"
CDS 341998..342741
/locus_tag="PM3016_301"
/codon_start=1
/transl_table=11
/product="nitrate/sulfonate/bicarbonate ABC transporter
ATP-binding protein"
/protein_id="YP_005310426.1"
/db_xref="GI:379718295"
/db_xref="GeneID:11882295"
/translation="MKLVVEQVGKRFGERVILKDVCLSVRENEFVCILGHSGCGKSTL
LNMVAGYLFPDEGAIRVDGRTVEGPSKSRGMVFQDHALFPWYSVLENVAFGPEVQGMP
RPKARELAAEFLSLVGLESYAAHYPAELSGGMKQRVGIARALASRPDILLMDEPFGAL
DILTRDMMQRELRSIYEKLKPTILFVTHSISEAVSLADRVVVMKHGVIADTFEIGIPH
PRSYDSPGFGEYMARIEKLLMDTGEGVPA"
misc_feature 341998..342714
/locus_tag="PM3016_301"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism]; Region: TauB; COG1116"
/db_xref="CDD:31313"
misc_feature 342004..342645
/locus_tag="PM3016_301"
/note="NrtD and SsuB are the ATP-binding subunits of the
bacterial ABC-type nitrate and sulfonate transport
systems, respectively. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars; Region:
ABC_NrtD_SsuB_transporters; cd03293"
/db_xref="CDD:73052"
misc_feature 342100..342123
/locus_tag="PM3016_301"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73052"
misc_feature order(342109..342114,342118..342126,342229..342231,
342457..342462,342559..342561)
/locus_tag="PM3016_301"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73052"
misc_feature 342220..342231
/locus_tag="PM3016_301"
/note="Q-loop/lid; other site"
/db_xref="CDD:73052"
misc_feature 342385..342414
/locus_tag="PM3016_301"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73052"
misc_feature 342445..342462
/locus_tag="PM3016_301"
/note="Walker B; other site"
/db_xref="CDD:73052"
misc_feature 342469..342480
/locus_tag="PM3016_301"
/note="D-loop; other site"
/db_xref="CDD:73052"
misc_feature 342547..342567
/locus_tag="PM3016_301"
/note="H-loop/switch region; other site"
/db_xref="CDD:73052"
gene 342738..343610
/locus_tag="PM3016_302"
/db_xref="GeneID:11882296"
CDS 342738..343610
/locus_tag="PM3016_302"
/codon_start=1
/transl_table=11
/product="nitrate/sulfonate/bicarbonate ABC transporter
permease"
/protein_id="YP_005310427.1"
/db_xref="GI:379718296"
/db_xref="GeneID:11882296"
/translation="MSELQSAAVPQKDAAVLPPKSQALRKGGRPSAATGWNMAPYVLF
FAVWEIFSRVNGSLALFNPLFLPAPSVLVIEGWALAKTGVVADSLLSSSIRIAAGFMI
GSVLAVALAVLMVKFSRLERWISPVLTLVSPIPALALLPLFIIWFGIGEFPKVLLIAW
TTFVPVLVNTLDGFKSVPSTLIRSALSLGASERQVFTRVMIPSAVPNLLIGAQISLGL
SFSALIVAEMMGADSGLGYIIVDARNYFKITNMFVAIILIGMEYSLFSFLLKLLERRV
LAWRKGGMSGAVEK"
misc_feature 342810..343583
/locus_tag="PM3016_302"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism]; Region: TauC; COG0600"
/db_xref="CDD:30945"
misc_feature <343173..343511
/locus_tag="PM3016_302"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(343197..343199,343416..343418,343446..343448,
343455..343457,343485..343487)
/locus_tag="PM3016_302"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(343212..343217,343221..343223,343230..343232,
343239..343244,343248..343250,343260..343265,
343272..343274,343323..343325,343365..343370,
343377..343379,343398..343409,343416..343421,
343452..343457,343485..343490,343497..343502,
343506..343511)
/locus_tag="PM3016_302"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(343275..343313,343329..343334,343344..343346)
/locus_tag="PM3016_302"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 343653..344747
/locus_tag="PM3016_303"
/db_xref="GeneID:11882297"
CDS 343653..344747
/locus_tag="PM3016_303"
/codon_start=1
/transl_table=11
/product="nitrate/sulfonate/bicarbonate ABC transporter
substrate-binding protein"
/protein_id="YP_005310428.1"
/db_xref="GI:379718297"
/db_xref="GeneID:11882297"
/translation="MKRKNGTGSILAAALVLLLSACGTGGPSGGSPAASEKAVTATGT
AEGSGALETKDITLIGVRDAQISSQQIIADKLGYFKEAGLNVTSKLIESGPDIGPMVS
GGSAPVSIQTNFMDIILKSNGIGVKIVAPLAQIAGTQAVVGAKDLDLKSAKDLEGKTI
GIPNGADVKIAIDNMGKELGVDVSKIKFVNLAPSDAVVALQNGDIDAMACWEPFITKA
TQAGGKFLFSGTKSELPEKKGDVNWMSVHTTMQVTDAYLQKNPNTVKAVLGALKKATD
YINTNRDEAIKILAPELHLTEGELKEIMNRNVYSMEAGDTYVNGSNGPAVGAYLKSVG
NIKTVPEPASYHDLSLLQAVDASLVKSQFK"
misc_feature 343764..344696
/locus_tag="PM3016_303"
/note="ABC-type nitrate/sulfonate/bicarbonate transport
systems, periplasmic components [Inorganic ion transport
and metabolism]; Region: TauA; COG0715"
/db_xref="CDD:31059"
misc_feature 343851..344522
/locus_tag="PM3016_303"
/note="NMT1-like family; Region: NMT1_2; cl15260"
/db_xref="CDD:212369"
gene complement(344833..345243)
/locus_tag="PM3016_304"
/db_xref="GeneID:11882298"
CDS complement(344833..345243)
/locus_tag="PM3016_304"
/codon_start=1
/transl_table=11
/product="ADP-ribose pyrophosphatase"
/protein_id="YP_005310429.1"
/db_xref="GI:379718298"
/db_xref="GeneID:11882298"
/translation="MRLPPKHIVSAAAIVLNERGELLLVRGPQRGWEMPGGQVEEGES
LGTAAVRETLEESGVEIEIVRFCGIFQNVRGSICNTLFLGRPIGGEPVPTEESLESGF
FPLPEALERVTWGNFRQRIEYCLRPSAEPFYIPF"
misc_feature complement(344878..345222)
/locus_tag="PM3016_304"
/note="Nudix hydrolase is a superfamily of enzymes found
in all three kingdoms of life, and it catalyzes the
hydrolysis of NUcleoside DIphosphates linked to other
moieties, X. Enzymes belonging to this superfamily require
a divalent cation, such as Mg2+ or Mn2+...; Region:
Nudix_Hydrolase; cl00447"
/db_xref="CDD:212606"
misc_feature complement(order(345073..345099,345127..345135))
/locus_tag="PM3016_304"
/note="nudix motif; other site"
/db_xref="CDD:72880"
gene complement(345240..345731)
/locus_tag="PM3016_305"
/db_xref="GeneID:11882299"
CDS complement(345240..345731)
/locus_tag="PM3016_305"
/codon_start=1
/transl_table=11
/product="transcription activator effector binding
protein"
/protein_id="YP_005310430.1"
/db_xref="GI:379718299"
/db_xref="GeneID:11882299"
/translation="MSLPILSKPGIHLVSLEKLQLIGLHVTIPFELGKDGERSVHRVR
EEFIRRRHEIRHAVQPARYVCAHYASEVLFTYFYCLEVSSLDAIPGGMTGFTVPPHRY
AAIRSDGDPYLDIENGLLANGLRKDIRALALEFYSFERPLWPSEVDVYVPLEPSDETE
ALA"
misc_feature complement(345270..345701)
/locus_tag="PM3016_305"
/note="Bacterial transcription activator, effector binding
domain; Region: AraC_E_bind; smart00871"
/db_xref="CDD:197939"
gene complement(346312..350031)
/locus_tag="PM3016_306"
/db_xref="GeneID:11882300"
CDS complement(346312..350031)
/locus_tag="PM3016_306"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310431.1"
/db_xref="GI:379718300"
/db_xref="GeneID:11882300"
/translation="MYRPLQAVQPNPAAQKNGISERSAYMIYPLGDTHRTRPRKTASP
LPLPHPKFTNIGDDLIMSSKPSNRKNLLIASSLLLASQSLGTAGAAGTDTQGSSSPSA
SGSATVTASTYGSVTAATYGTDTTAPTAPASLTSTAVTASSVTLSWSSAADNVKVTGY
DIYQGATKVASVPDTSYTVTGLAPNTTYSFTVKAKDAAGNASPASKSLSVTTPAIAAL
TAGELLFEAELLTQRDSGDATTQYSDTAASGGKWEYYNANAVADYIEYDLNVPQAGTY
AITGLVRSANNRSIVQLSVDGKAQGSPVDAYSTTAAYAEKSFGSITFAAGGTKKFRFA
VTGRNASSTDYKIALDAIKLTPQGAADNVAPTAPSGLTSTGKTDTTVSLSWKAAADNI
GVTGYDIYSGATKLATVTGTTHVVTGLAPAAAYSFTVKALDAAGNASPASSPLAVTTN
AASSTSLTFEAESAPQADSGDATTLTADAAASGGQWESYNANAVGDYVEYALNVGAAG
SYEVRVAGKAGANAGSYEVRVAGKAGANAGTAVLTVDGTAQGAPIDFYKPAAQSAITE
YSRGQVYFNSPGFKIFRFTVTGKNASSTGYTVPLDAMKLVKVADSQAPSVPANVTVTA
KTGTSVSLAWTASTDDVKVACYDIYNGTAKAGSSTEPSFTVTGLSPNTSYTFTVKAKD
TAGNESAASAPVTAVTSAALGAVPLAVSLLGNHTMFIKSDGTVWGWGYNGHGQLGTGT
SNSTSVPGKVINLTGMKMIAGGENHTVALRSDGTLHTWGYNGYGQLGDDSTTTRYSPV
QVSTLTNWTAVSAGENHSLALKSDGTVWAFGYNGYGQLGDGTTSSQRTPVQVKDLTGV
VAIAAGKDFSLALKSDGTVWSWGQNTYGELGNGTTTRSSVPVQVALLTDVKAIAAGDY
HGVALKKDGSVFAWGYNGNGELGNSSTISQSTPVQSGVTGIKGIAAGPYHTLALKSDG
TVWSWGYNGYGQLGNGNNTSRSVPAAIPGLASIASIAAGENQSIAYGNDGILYSWGRN
ANGQLGNGTTVDTNVPHKVIGPNINPADTTAPAAVSDLRVSSQNVRSLTLNWSRATDD
VEVASYEIYNGSVLVATTGPTNTSHTLSNLALNTTYQITIRAKDATGNKAAASNVASA
TTSDKTPPATPKDVALTGLTSTTATLSWAASTDNDLVKQYNIYQGTTKVGSTASTSFT
VTGLTSKTAYSFTVKAEDDAANESTASAALSVTTE"
misc_feature complement(349396..>349575)
/locus_tag="PM3016_306"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature complement(order(349435..349437,349480..349482))
/locus_tag="PM3016_306"
/note="Interdomain contacts; other site"
/db_xref="CDD:28945"
misc_feature complement(order(349417..349422,349426..349428,
349432..349434))
/locus_tag="PM3016_306"
/note="Cytokine receptor motif; other site"
/db_xref="CDD:28945"
misc_feature complement(348970..349356)
/locus_tag="PM3016_306"
/note="Carbohydrate Binding Module 6 (CBM6); appended to
several carbohydrate binding enzymes, including several
glycoside hydrolase (GH) family 26 mannanase domains;
Region: CBM6_mannanase-like; cd04086"
/db_xref="CDD:193491"
misc_feature complement(order(348982..348984,349348..349350,
349354..349356))
/locus_tag="PM3016_306"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:193491"
misc_feature complement(348685..348939)
/locus_tag="PM3016_306"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature complement(order(348724..348726,348769..348771,
348937..348939))
/locus_tag="PM3016_306"
/note="Interdomain contacts; other site"
/db_xref="CDD:28945"
misc_feature complement(order(348706..348711,348715..348717,
348721..348723))
/locus_tag="PM3016_306"
/note="Cytokine receptor motif; other site"
/db_xref="CDD:28945"
misc_feature complement(347977..348192)
/locus_tag="PM3016_306"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature complement(order(347977..347979,348022..348024,
348190..348192))
/locus_tag="PM3016_306"
/note="Interdomain contacts; other site"
/db_xref="CDD:28945"
misc_feature complement(347725..347868)
/locus_tag="PM3016_306"
/note="Regulator of chromosome condensation (RCC1) repeat;
Region: RCC1; pfam00415"
/db_xref="CDD:201217"
misc_feature complement(347575..347718)
/locus_tag="PM3016_306"
/note="Regulator of chromosome condensation (RCC1) repeat;
Region: RCC1; pfam00415"
/db_xref="CDD:201217"
misc_feature complement(347425..347568)
/locus_tag="PM3016_306"
/note="Regulator of chromosome condensation (RCC1) repeat;
Region: RCC1; pfam00415"
/db_xref="CDD:201217"
misc_feature complement(347275..347418)
/locus_tag="PM3016_306"
/note="Regulator of chromosome condensation (RCC1) repeat;
Region: RCC1; pfam00415"
/db_xref="CDD:201217"
misc_feature complement(347128..347268)
/locus_tag="PM3016_306"
/note="Regulator of chromosome condensation (RCC1) repeat;
Region: RCC1; pfam00415"
/db_xref="CDD:201217"
misc_feature complement(346930..347019)
/locus_tag="PM3016_306"
/note="Regulator of chromosome condensation (RCC1) repeat;
Region: RCC1_2; pfam13540"
/db_xref="CDD:205718"
misc_feature complement(<346873..346971)
/locus_tag="PM3016_306"
/note="Regulator of chromosome condensation (RCC1) repeat;
Region: RCC1; pfam00415"
/db_xref="CDD:201217"
misc_feature complement(346627..346848)
/locus_tag="PM3016_306"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature complement(order(346627..346629,346672..346674,
346846..346848))
/locus_tag="PM3016_306"
/note="Interdomain contacts; other site"
/db_xref="CDD:28945"
gene complement(350290..350892)
/locus_tag="PM3016_307"
/db_xref="GeneID:11882301"
CDS complement(350290..350892)
/locus_tag="PM3016_307"
/codon_start=1
/transl_table=11
/product="phosphoglycerate mutase"
/protein_id="YP_005310432.1"
/db_xref="GI:379718301"
/db_xref="GeneID:11882301"
/translation="MTGVITTVYFVRHADSPYSAERERERGLSAAGEEAARRAALLLE
DEGIGFLVSSPYRRAVLTLQPLADRLGLPVAEEEDLRERKLSAEPLFPSREAFFEAKR
SLFADPQLRYPGGESSEEARQRGTAVLRGLLLRHRGSRLALGTHGDIMTLMLGAWDPA
YGFRFWQSTSMPDIYKAEFMEDAAGPCLYAVTRLWRGPGA"
misc_feature complement(<350632..350874)
/locus_tag="PM3016_307"
/note="Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction; Region: HP_PGM_like;
cd07067"
/db_xref="CDD:132718"
misc_feature complement(order(350719..350721,350854..350859))
/locus_tag="PM3016_307"
/note="catalytic core [active]"
/db_xref="CDD:132718"
misc_feature complement(350395..>350760)
/locus_tag="PM3016_307"
/note="Broad specificity phosphatase PhoE and related
phosphatases [General function prediction only]; Region:
phoE; COG0406"
/db_xref="CDD:30755"
gene complement(350943..351863)
/locus_tag="PM3016_308"
/db_xref="GeneID:11882302"
CDS complement(350943..351863)
/locus_tag="PM3016_308"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310433.1"
/db_xref="GI:379718302"
/db_xref="GeneID:11882302"
/translation="MKRRSMAAVLSFLLTVSLPVPYAQGAGEDLSAPAPTAAADSTTE
RPVSQSGIVFQGKVDIGGYGLYVTIRGERREGLPTVVFENGYGDSSGIWDAAAPELAK
VTQVVSYDRANIGLSDAPSSASYSALDAANRLNLLLKKTGVNGPLVLIGHSMGGLYIR
EYAYLYPTSVKGLIFVDASHEHMEDVLFPEYPVETRRSIVEDDLVTSGGREGHYYPDV
DNTYRQIDQGRQTDFLRSVPITVLSGGNHGYPDTFIDGEARWAQLQRSLAALSNDSVH
VTDGNSGHYLHTQNPSLVVASAVTMFGRIK"
misc_feature complement(350976..351626)
/locus_tag="PM3016_308"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
pfam12697"
/db_xref="CDD:205026"
gene 352204..353508
/locus_tag="PM3016_309"
/db_xref="GeneID:11882303"
CDS 352204..353508
/locus_tag="PM3016_309"
/codon_start=1
/transl_table=11
/product="glycoside hydrolase family protein"
/protein_id="YP_005310434.1"
/db_xref="GI:379718303"
/db_xref="GeneID:11882303"
/translation="MKKAARWLCLLLGLAAAAGIEGCGSQSPVPPAGQQPPQSLQPER
SGNEAAQEPVEPAMKPRDDIRDRVEAMSLDEKVGQLLLVGLEGTEVDGRAREWIHTYH
AGGFILFRDNIQNTAQLAKLVGDLKEANRSSGGVPLWLSLDEEGGRVSRMPAELTKPP
SAAAVGRADKPAASLAVGRAVGRELAAFGMNMNFAPVLDVFSNPANTVIGDRAYGRDP
AQVSRIGIQTMKGLQSQQVAAVVKHFPGHGDTVEDSHYGLPVVAHDLERLRKLELKPF
AEAITSGADAVMVAHILLPKLDAEAPASLSRRIVTGLLREEMGFGGVVVTDDLVMGAI
TKRYDLGQAGVQAVAAGVDVLLVGHGHEAGTAVFSAVKRAVQEGVITEARLKESVTRI
LRLKAKYRLTDERPGAVDTAALNAGLKNAMKELEVTAPAGGK"
misc_feature 352414..353463
/locus_tag="PM3016_309"
/note="Beta-glucosidase-related glycosidases [Carbohydrate
transport and metabolism]; Region: BglX; COG1472"
/db_xref="CDD:31661"
misc_feature 352417..353388
/locus_tag="PM3016_309"
/note="Glycosyl hydrolase family 3 N terminal domain;
Region: Glyco_hydro_3; pfam00933"
/db_xref="CDD:201514"
gene complement(353884..356991)
/locus_tag="PM3016_310"
/db_xref="GeneID:11882304"
CDS complement(353884..356991)
/locus_tag="PM3016_310"
/codon_start=1
/transl_table=11
/product="PAS/PAC sensor signal transduction histidine
kinase"
/protein_id="YP_005310435.1"
/db_xref="GI:379718304"
/db_xref="GeneID:11882304"
/translation="MPHDLNPATPALLAQSGLYPSLFEHHPDAVYILDRQGRHLHANP
AAMRLTGYSVQEAAKAVTEQLSRDRRLLGQREREFSKALRGEATSPYVMRLTCRDGRT
VDLEVTYIPIVSDGRIIGAYGIGKDVTEKLENERKRRECEDRYELISTHAQDIISYST
PDGICRFISPSVSKLLGYTPEELEGTRLSALYHPEDYEALRGRSFEDEDVFTCRFRRA
SGEYIWVETTFKTVRGADGAVQYYLGIGRDITHRRRMEEHLKHSENSLAAAQRVARCG
SWHWDVLSDSIEGSAEFQRILGREVRSYGVFLSCIHPEDRDGVDRAVRLALQGAPFNY
DYRIVLPDGELRHIHAQADICRGPDGRVCSMIGTTQDITERKHMENRLRESEQRFKSL
FDYHPSAIYSMDLEGRLTSVNASLEKLVGCSRGELLGSPHERLAAPGDLAKASGYFTL
ACQGVPQNGEMVLRSREGRDIDVQMQYVPIVVEGRVVGVYGMASDITERKRHVVEIQK
LSSQYTLILNSVAEGIYGVDLSGRGVFLNPAASDMLGYTPEEFEGRPVHTSVHHSKPD
GSPYPRRECPIYLTARDGLSRYVTDEVFWRKDGTSFLVEYRTHPIYDQGKLVGAVVVF
TDTTSEREIIQAKESAERAAEAKSEFLAVMSHEIRTPMNGIIGMTDILLDTDLTGEQR
EYTEIIRQSGASLLRILGDILDFSRIEAGKMALEHHRFQVEDTVREVLDLFTPKAQEK
GLRLQADLETGVPPLLGDSTRVKQILINLVGNALKFTERGSVTLTVRSRPAPAGSRML
DFTVEDTGIGIPAGKLHHLFQSFSQVHPAMNRKYGGTGLGLAICKKLVELMGGTIAVE
STEGAGSSFTFTLLFPEEGSEAPMAVGLPAHSAPEEGRRQEQAAGGEPGEDGPGKPLR
ILVAEETQAARMHLQRILSRLGHTVHTVPNGLAAVKAVQRQPYDLLLMSTVLPVMDGV
TAASRIRSLLPPERRPLVIGLAPGGGRGGQERYAHAGMAYVAARPPGTAELRTLLRRV
QVRHV"
misc_feature complement(356581..356940)
/locus_tag="PM3016_310"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:211562"
misc_feature complement(356635..356913)
/locus_tag="PM3016_310"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(order(356692..356694,356707..356709,
356791..356802,356836..356838,356854..356856,
356866..356868))
/locus_tag="PM3016_310"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(356665..356667,356671..356673,
356755..356760,356767..356769,356797..356799,
356809..356811))
/locus_tag="PM3016_310"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(356215..356568)
/locus_tag="PM3016_310"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:211562"
misc_feature complement(356245..356532)
/locus_tag="PM3016_310"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(order(356332..356334,356347..356349,
356410..356421,356458..356460,356476..356478,
356488..356490))
/locus_tag="PM3016_310"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(356305..356307,356311..356313,
356392..356394,356416..356418,356428..356430))
/locus_tag="PM3016_310"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(355888..356124)
/locus_tag="PM3016_310"
/note="PAS fold; Region: PAS_3; pfam08447"
/db_xref="CDD:203948"
misc_feature complement(355876..>356073)
/locus_tag="PM3016_310"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(order(355936..355938,355942..355944,
356023..356028,356035..356037,356059..356061,
356071..356073))
/locus_tag="PM3016_310"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(order(355963..355965,355978..355980,
356053..356064))
/locus_tag="PM3016_310"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(355489..355839)
/locus_tag="PM3016_310"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:211562"
misc_feature complement(<355561..355803)
/locus_tag="PM3016_310"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(order(355588..355590,355603..355605,
355678..355689,355726..355728,355744..355746,
355756..355758))
/locus_tag="PM3016_310"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(355561..355563,355567..355569,
355651..355656,355684..355686,355696..355698))
/locus_tag="PM3016_310"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(354385..355476)
/locus_tag="PM3016_310"
/note="phosphate regulon sensor kinase PhoR; Region:
phoR_proteo; TIGR02966"
/db_xref="CDD:163090"
misc_feature complement(355114..355431)
/locus_tag="PM3016_310"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature complement(order(355195..355197,355210..355212,
355297..355299,355309..355317,355354..355356,
355372..355374,355384..355386))
/locus_tag="PM3016_310"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature complement(order(355168..355170,355174..355176,
355258..355260,355270..355272,355279..355281,
355312..355314,355324..355326))
/locus_tag="PM3016_310"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature complement(354871..355044)
/locus_tag="PM3016_310"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(354886..354888,354898..354900,
354907..354909,354919..354921,354928..354930,
354940..354942,354988..354990,354997..354999,
355009..355011,355018..355020,355030..355032,
355042..355044))
/locus_tag="PM3016_310"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(355024..355026)
/locus_tag="PM3016_310"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(354385..354708)
/locus_tag="PM3016_310"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(354397..354399,354403..354408,
354421..354423,354427..354429,354475..354486,
354565..354570,354574..354576,354580..354582,
354586..354588,354667..354669,354676..354678,
354688..354690))
/locus_tag="PM3016_310"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(354676..354678)
/locus_tag="PM3016_310"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(354478..354480,354484..354486,
354568..354570,354574..354576))
/locus_tag="PM3016_310"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature complement(353887..354261)
/locus_tag="PM3016_310"
/note="FOG: CheY-like receiver [Signal transduction
mechanisms]; Region: CheY; COG0784"
/db_xref="CDD:31127"
misc_feature complement(353902..354246)
/locus_tag="PM3016_310"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(353941..353946,353953..353955,
354010..354012,354079..354081,354103..354105,
354232..354237))
/locus_tag="PM3016_310"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(354103..354105)
/locus_tag="PM3016_310"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(354079..354087,354091..354096))
/locus_tag="PM3016_310"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(353938..353946)
/locus_tag="PM3016_310"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 357180..357455
/locus_tag="PM3016_311"
/db_xref="GeneID:11882305"
CDS 357180..357455
/locus_tag="PM3016_311"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310436.1"
/db_xref="GI:379718305"
/db_xref="GeneID:11882305"
/translation="MSIRAYNPYEDPALHATQTHRSRGWDAEERVPFNDAISHFDTVN
GFRMPKRIGELPARVRTAFRIYASVSAVTLAAALADSLISSIGGLLP"
gene 357576..358754
/locus_tag="PM3016_312"
/db_xref="GeneID:11882306"
CDS 357576..358754
/locus_tag="PM3016_312"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310437.1"
/db_xref="GI:379718306"
/db_xref="GeneID:11882306"
/translation="MKWSKGTAERVRVLVLSGNLGDGHRQAAKALAEASRLGTREAVD
TEVVDFMQRVYPQLQHVVKYGFLKMVEKTPSIYGYLYHRTKYDEGLSPLFSLFLRLGR
RALMRLAAEYRPDAIICTFPLAAAAVSLLKEEGRLHVPLITVITDHTDHALWLNPATD
LYLVGSEQVASALRARGIASSRVAVSGIPVAPRFHAEEDRTVVRQQLGLQPDMPVVLV
MGGGGGLLSEGIRSLLRSEAVCAGMQLVIVCGSNRAVMRELEEELAHRPSGRVRLLGF
AEDIHRWMSAADLLLTKPGGLTTSEAVAKALPMLLYKPIPGQEEDNAAVLMRAGVAVQ
AEGGRALTDQLLELVHDPARLAHMRGRAEAFRIARPAERAWEALQPRPQPELSMSKAR
"
misc_feature 357609..358691
/locus_tag="PM3016_312"
/note="diacylglycerol glucosyltransferase; Provisional;
Region: PRK13609"
/db_xref="CDD:184180"
misc_feature 357645..358145
/locus_tag="PM3016_312"
/note="Monogalactosyldiacylglycerol (MGDG) synthase;
Region: MGDG_synth; pfam06925"
/db_xref="CDD:191643"
misc_feature <357906..358694
/locus_tag="PM3016_312"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:212618"
gene complement(359256..359441)
/locus_tag="PM3016_313"
/db_xref="GeneID:11882307"
CDS complement(359256..359441)
/locus_tag="PM3016_313"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310438.1"
/db_xref="GI:379718307"
/db_xref="GeneID:11882307"
/translation="MHMRSSEFYENLPLKCCDTCGSAIEEMADCYSSTCTSCRGLTFY
PLSPLTRSLADPTYSSE"
misc_feature complement(359328..359435)
/locus_tag="PM3016_313"
/note="YhfH-like protein; Region: YhfH; pfam14149"
/db_xref="CDD:206318"
gene complement(360626..363838)
/locus_tag="PM3016_314"
/db_xref="GeneID:11882308"
CDS complement(360626..363838)
/locus_tag="PM3016_314"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310439.1"
/db_xref="GI:379718308"
/db_xref="GeneID:11882308"
/translation="MYFHITAFSRLALTALLLLVLAAAGAGLLGFLPVPPASSGGYDL
GMRDGGWSVHIGDLPVQAGRAPDESAADWKPWNEAVPQYEGKRYTGYLWLKRPLPAGD
WKHPVLYVRDLAAYEVYLGAQPLDSSFSLLELQASGPSLRQTSSGSGSPGSGTLLVRS
YQDAKGIQLGHLSIGSERDVWLGLFRRDLNHLAPGTLFLGAAVTGCLLYLRRRTKPAY
LYFALLAGSAAFGTLLTTEMAALFLLDRLQELALLALPAGGCALFALLDSFCGSGPLR
LRRWMSRSMLGLLAISLAASLWDRVLYKDTITLVFPLLFLVCLLLSAWLTVQSYRSSR
ERSDAWLLAGYGVGALALVLSVLTRLLPGTWRDAGVPSLGDAADGIFLTVLLFLVCLG
MMLLQRSSEAYIRAERFLEEFQRQNHMLAAAGRLNEERLAIASRELQAPLNGIIGLAE
SLLDGAAGPLNRTARSSLELAVSSGKRLSCLTRDLIDFSLAKHPQPLRRTEVEVGRSI
RLALDVFTPLAAKKGVALTASLPAGLPAASAEESRLEQILYALLGQALAFTSAGEIGV
KAGSRDGFIEVTVFGTGVGLQKEARERIQLAFGTDTVPAERASHEGEPALSLTRTLVE
GYGGTLEDRQGLDRILFRFTLPMWERTPGVVSSPIDGERLVRTAGIHADPSLEASVFS
AAQGRQEVSAGRHSGAPGLPADSRSHHAFRPAARILIVDEDPVNLQVLGNLLALQPYT
IVQAASGPEALASITAEKPDLLLIDLMMPRMTGYDIIRHIRRLYKATELPILLVTDKD
RVDGLVEGFEAGANDCVTKPVVKKELLARIEQQLQLYRMHRSLEMQMEERTLAHEETK
LRLQESMRETAEAVAELSVAEERGRAAREIHDIVGHTLTTTVVQIEAAKRLIAKNDEK
GFQKLDVSQELVRKSLNEIRHSVHMLSASTADYDLAAALRQLLHDTQDTSGIEVEHRI
SPMPPLSALQKKVIYHALQEGLANGMRHGDSRRFRFRLTQEERELHFLLTNDGRPYTG
APMGYGLTAMKERVQQLGGSMNLSAGDLDGCRLDIVLPVD"
misc_feature complement(361883..>362644)
/locus_tag="PM3016_314"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(362372..362548)
/locus_tag="PM3016_314"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(362384..362386,362396..362398,
362405..362407,362417..362419,362426..362428,
362438..362440,362495..362497,362504..362506,
362516..362518,362525..362527,362537..362539))
/locus_tag="PM3016_314"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(362531..362533)
/locus_tag="PM3016_314"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(361904..362209)
/locus_tag="PM3016_314"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(361916..361918,361922..361927,
361940..361942,361991..361996,361997..361999,
362081..362086,362090..362092,362096..362098,
362102..362104,362168..362170,362177..362179,
362189..362191))
/locus_tag="PM3016_314"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(362177..362179)
/locus_tag="PM3016_314"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(361994..361996,361997..361999,
362084..362086,362090..362092))
/locus_tag="PM3016_314"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature complement(361352..361690)
/locus_tag="PM3016_314"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature complement(361343..361687)
/locus_tag="PM3016_314"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(361385..361390,361397..361399,
361454..361456,361520..361522,361544..361546,
361673..361678))
/locus_tag="PM3016_314"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(361544..361546)
/locus_tag="PM3016_314"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(361520..361528,361532..361537))
/locus_tag="PM3016_314"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(361382..361390)
/locus_tag="PM3016_314"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(360632..>361339)
/locus_tag="PM3016_314"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG4585"
/db_xref="CDD:34223"
misc_feature complement(361019..361204)
/locus_tag="PM3016_314"
/note="Histidine kinase; Region: HisKA_3; pfam07730"
/db_xref="CDD:203743"
misc_feature complement(360629..360883)
/locus_tag="PM3016_314"
/note="Histidine kinase-, DNA gyrase B-, and HSP90-like
ATPase; Region: HATPase_c; pfam02518"
/db_xref="CDD:202270"
gene complement(364166..364837)
/locus_tag="PM3016_315"
/db_xref="GeneID:11882309"
CDS complement(364166..364837)
/locus_tag="PM3016_315"
/codon_start=1
/transl_table=11
/product="two component LuxR family transcriptional
regulator"
/protein_id="YP_005310440.1"
/db_xref="GI:379718309"
/db_xref="GeneID:11882309"
/translation="MNSATTIVLADDQTLMRDGLHTILTLEDDLEVVGTAENGQQALE
LVEQLRPNLVLMDIQMPVMNGIESTKRIKKQFPETIILILTTFAEDDYIVEGLANGAS
GFLLKDMPGDKLIQSIRDCVKGQLMMPAVIASKLAARLSSASAAATAEFDPKRLKSEG
ISFTEREKNIISLMMEGKNNRQIAGLLFMSEGTVKNYVSMIYNKIGTNDRTKAILALK
EWMTP"
misc_feature complement(364181..364819)
/locus_tag="PM3016_315"
/note="Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal transduction
mechanisms / Transcription]; Region: CitB; COG2197"
/db_xref="CDD:32379"
misc_feature complement(364472..364816)
/locus_tag="PM3016_315"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(364514..364519,364526..364528,
364583..364585,364643..364645,364667..364669,
364802..364807))
/locus_tag="PM3016_315"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(364667..364669)
/locus_tag="PM3016_315"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(364643..364651,364655..364660))
/locus_tag="PM3016_315"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(364511..364519)
/locus_tag="PM3016_315"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(364196..364351)
/locus_tag="PM3016_315"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
Region: LuxR_C_like; cd06170"
/db_xref="CDD:99777"
misc_feature complement(order(364208..364210,364241..364255,
364259..364264,364268..364273,364295..364303,
364340..364348))
/locus_tag="PM3016_315"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
misc_feature complement(order(364202..364210,364301..364303,
364307..364309,364313..364315))
/locus_tag="PM3016_315"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:99777"
gene 365101..365445
/locus_tag="PM3016_316"
/db_xref="GeneID:11882310"
CDS 365101..365445
/locus_tag="PM3016_316"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310441.1"
/db_xref="GI:379718310"
/db_xref="GeneID:11882310"
/translation="MKPMEPGRPISEKEDIERNKTSAVLAYILFFLPLLTAKDSRFAM
YHANQGLLLLLTAMAFNIILGLIPVIGWLLMPVTNLAVLVLAVLGMVKAARGERRPLP
VVGSFTLIPSPE"
misc_feature 365137..365421
/locus_tag="PM3016_316"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG3296; cl15800"
/db_xref="CDD:210200"
gene 365854..366789
/locus_tag="PM3016_317"
/db_xref="GeneID:11882311"
CDS 365854..366789
/locus_tag="PM3016_317"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310442.1"
/db_xref="GI:379718311"
/db_xref="GeneID:11882311"
/translation="MGVRHAAAARPVRRRARPRPRGPASRAGRASPEAAAHGRRRRCS
RGSAGRTAAGCAAALGPGNRGHSRGSAELLRAAGRPLPGRVAVYAAEADPAALLAGER
ALQRAGTACGLPVRFHALPLHGCALPAAWPAELSAGSGTLLAYAACGLPGAGPSGFTP
QAEQLAAVGALRPRALVLSAPDADFAAGGPLGRFEAAWPYYEALFRWLGDRLLPAGVR
SGLHARYGAGLASVLGEAASPDGAQASRALFVRTAEWIRRLQAAGYRPAPIPPGAGLG
SPAADGLRVEPHPWHYGLSYAGVNLQSVLCAIPAS"
gene 366863..368308
/locus_tag="PM3016_318"
/db_xref="GeneID:11882312"
CDS 366863..368308
/locus_tag="PM3016_318"
/codon_start=1
/transl_table=11
/product="integral membrane sensor hybrid histidine
kinase"
/protein_id="YP_005310443.1"
/db_xref="GI:379718312"
/db_xref="GeneID:11882312"
/translation="MPFSKVFFVNVSLLVTLSYLVNLGYKYTADRFGWWTAMSARARE
ALVVALLVSAGWVTMLFGLQINESMLFDLRLVPVIVSIFVFRRASLPLLVGIGIGLVR
LTLGWNYAALAGFFNLSLLGFAATGLSLWFRQTQVGYPANFVISLLAINVLNAVNLSL
FGAIPSWIYVTTIMPYTLPLGTLLSALFLFILRDFYLDRKRTGELRATNRLLMRQKKE
LERAKAALEEQARELRMASRYKSEFLANMSHELRTPLNSIITLSQLTADGHEGRFTEE
EVQYLGIIRASGEELLRQINDILDLSKMEAGHLEFHHEEVSVHEIAQILEHTFSWAAG
QKGLTFSVTAAGDIPEIIRTDGARVHQILKNLLTNAVKFTEQGSVGLDIRKEHEGPGG
EAGSWVAFAVTDTGIGISRDKHALIFEAFRQADGSISRRYGGTGLGLSISLELAKRLG
GHLGVESEPGKGSRFTLYLPVHPEDDQRSSS"
misc_feature 367580..367771
/locus_tag="PM3016_318"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(367589..367591,367601..367603,367613..367615,
367622..367624,367634..367636,367643..367645,
367700..367702,367712..367714,367721..367723,
367733..367735,367742..367744,367754..367756)
/locus_tag="PM3016_318"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 367607..367609
/locus_tag="PM3016_318"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 367937..368269
/locus_tag="PM3016_318"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(367955..367957,367967..367969,367976..367978,
368066..368068,368072..368074,368078..368080,
368084..368089,368168..368179,368225..368227,
368231..368233,368246..368251,368255..368257)
/locus_tag="PM3016_318"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 367967..367969
/locus_tag="PM3016_318"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(368078..368080,368084..368086,368168..368170,
368174..368176)
/locus_tag="PM3016_318"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 368530..369147
/locus_tag="PM3016_319"
/db_xref="GeneID:11882313"
CDS 368530..369147
/locus_tag="PM3016_319"
/codon_start=1
/transl_table=11
/product="putative NADH nitroreductase"
/protein_id="YP_005310444.1"
/db_xref="GI:379718313"
/db_xref="GeneID:11882313"
/translation="MSQVNQTISAEEAILSRHSVRKYERDVVIPQAELDEILSLAHSA
PSSWNLQHWRFLVIQEQANKDRLLPIAFNQQQVSDASVVVVVLGDLEANLIAPKIYES
ATPEIRDMMVGQINGAYENNPAVARDEAIRNASLAAMQLMLAARAKGYDTVPMGGYNP
QALIQEFKIPARYVPVMLLPIGKAASPARATERLPLDNVVINESF"
misc_feature 368560..369126
/locus_tag="PM3016_319"
/note="Nitroreductase-like family 1. A subfamily of the
nitroreductase family containing uncharacterized proteins
that are similar to nitroreductase. Nitroreductase
catalyzes the reduction of nitroaromatic compounds such as
nitrotoluenes, nitrofurans and...; Region:
Nitroreductase_1; cd02137"
/db_xref="CDD:73305"
misc_feature order(368566..368571,368578..368580,368632..368634,
368653..368661,368674..368676,368680..368682,
368692..368700,368704..368718,368806..368811,
368851..368856,368863..368865,368902..368904,
368911..368913,369028..369033,369103..369111,
369115..369126)
/locus_tag="PM3016_319"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73305"
misc_feature order(368578..368580,368584..368586,368662..368670,
368674..368676,368755..368757,368809..368811,
368986..369000)
/locus_tag="PM3016_319"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73305"
gene 369453..371243
/locus_tag="PM3016_320"
/db_xref="GeneID:11882314"
CDS 369453..371243
/locus_tag="PM3016_320"
/codon_start=1
/transl_table=11
/product="histidine kinase"
/protein_id="YP_005310445.1"
/db_xref="GI:379718314"
/db_xref="GeneID:11882314"
/translation="MNPVTALIRWSNNINIRNKLILAFILVVFIPVMLVGGFLTYEFR
KTVLDHATQQTSNNVDKIKQRTLEIIRMPIEVSNKLLVDPRLSTLVNTRYDSTYEVVE
AYRNYAEFKEYMKLYKEIVNIRFYTTNPTLIDNWDFIQPDTKTMGSFWYRHAMSNNRD
TISWHYIEDETKNSQKYLSLVRRVVFHDYRTSGVLVINVNADSLNAMVRQEPFDTMLL
DERGYVVAAKNPAWVGRNAAELQLGPDFLNMMTGTYEAVFGGKPSKVLVEDLLPEASG
NGLKIVSIFTIESIVSGANRISLMGLIIILTSLSIAMVLIYFSSKLLSSRLFRLKEQL
VQVSTGNLNVASTIDGNDEIGMLSRQFNYMVESIRELMEEVSESNRQKSQLELQQRDI
KLKMMASQINPHFLFNALESIRMKAHMQGQAELAAIVRSLGKLLRKNLEIGGGRIPLT
EELEIVRCYLEIQTFRFEDRLTFKLELDPLARDVPLPPLMIQPLVENAIIHGLESREE
GGVVEVRTKLEDDHLRVEVIDNGLGIPPERMAFIERSLADSDGEGEHRIGLRNVHQRL
SLTYGEGYGLQITSGPDAGSRIHFMIPIGG"
misc_feature 370290..371234
/locus_tag="PM3016_320"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 370446..370562
/locus_tag="PM3016_320"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(370452..370457,370461..370463,370509..370514,
370518..370523,370530..370535,370539..370544,
370551..370556)
/locus_tag="PM3016_320"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 370629..370877
/locus_tag="PM3016_320"
/note="Histidine kinase; Region: His_kinase; pfam06580"
/db_xref="CDD:203479"
misc_feature 370920..371228
/locus_tag="PM3016_320"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(370929..370931,370941..370943,370950..370952,
371031..371033,371037..371039,371043..371045,
371049..371054,371118..371129,371184..371186,
371190..371192,371205..371210,371214..371216)
/locus_tag="PM3016_320"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 370941..370943
/locus_tag="PM3016_320"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(371043..371045,371049..371051,371118..371120,
371124..371126)
/locus_tag="PM3016_320"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 371248..372855
/locus_tag="PM3016_321"
/db_xref="GeneID:11882315"
CDS 371248..372855
/locus_tag="PM3016_321"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310446.1"
/db_xref="GI:379718315"
/db_xref="GeneID:11882315"
/translation="MKKVVIVDDELAIRKGLRTLIDWERYGFEVAGDAANGREGLRLH
AELAPDLMVVDIKMPGMDGLQLLGEIRKTDPVCRFLVLSGYADFQYAKQAIGCGVNGY
MLKPVDEEEMHRELERIAAEMEDKAQTARLSRSKRREELLRAVLHGGAAAEGVGPEEL
EELTGGQGRICGILLLAVSSSASAGAGGAPTAAEAYGTAKSWLTEAFDTCGCGFVFPA
EPYIGLLLYENPGMPKVRQRLYDELSEGLGALGLTFTAAAGPAAGSPEGLAASYAGAC
RLLGQRFLLGGAEIHTRLGAEVEELLAAEAEPAEKAAAAAEKSAEKLYFALDLGDKEG
VRDALAEAGRWMLRQDPAEQAVKTQFAQLITVVLGKLSADGTAGMPRVQEGMPVVTGI
YEQPSYQDLLRYVGSAFDKLIDAAGSTSSEPVLKQMLHFIQRHYSENLKLETLAELFK
YNSGYLGKLFKNYTGDSFHTYLDKVRIRRAIELLGEGLKVHQVAQLVGYANVDYFHSK
FKKYVGMPPSAYKEKPQRAEVKVGGNV"
misc_feature 371257..371598
/locus_tag="PM3016_321"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 371260..371607
/locus_tag="PM3016_321"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(371269..371274,371410..371412,371434..371436,
371494..371496,371551..371553,371560..371565)
/locus_tag="PM3016_321"
/note="active site"
/db_xref="CDD:29071"
misc_feature 371410..371412
/locus_tag="PM3016_321"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(371419..371424,371428..371436)
/locus_tag="PM3016_321"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 371560..371568
/locus_tag="PM3016_321"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 372541..372663
/locus_tag="PM3016_321"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature 372562..372810
/locus_tag="PM3016_321"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature 372703..372807
/locus_tag="PM3016_321"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 372955..373881
/locus_tag="PM3016_322"
/db_xref="GeneID:11882316"
CDS 372955..373881
/locus_tag="PM3016_322"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310447.1"
/db_xref="GI:379718316"
/db_xref="GeneID:11882316"
/translation="MKNKGVIMVLAAAVAWGLSGIGAQLFFSHFDSTPGWLVSVRMLC
AGGLMILLHSLLQGVKSTFSVWSHKKDRRSLLVFGLVGMLGVQYTFFEAIDKGNAATA
TLLQYLGPVFIIAYVSVHRRRMPGGRELSAFALALIGIFLMTTGGSFGSLTMSVEAFV
WGIVTALAAAFYTLYPGRLIAAWGSVPVVGWSMIIGGTGLSILHPPWVFDWSQASLYM
GGLLAFIVIIGTIIPFFLFLESLRYVTAAKASILSSAEPLTSVLVGTLFLHIPMDAVQ
LLGSLCIILTVIVLTLPSRRKEEAAEEPAVTG"
misc_feature 372994..373389
/locus_tag="PM3016_322"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
misc_feature 373453..373800
/locus_tag="PM3016_322"
/note="EamA-like transporter family; Region: EamA;
pfam00892"
/db_xref="CDD:144477"
gene complement(373957..375147)
/locus_tag="PM3016_323"
/db_xref="GeneID:11882317"
CDS complement(373957..375147)
/locus_tag="PM3016_323"
/codon_start=1
/transl_table=11
/product="major facilitator superfamily protein"
/protein_id="YP_005310448.1"
/db_xref="GI:379718317"
/db_xref="GeneID:11882317"
/translation="MNRLPILMLALGAFLVGTAELVVGGVLHAMAEDLGVSIALAGQF
ITAYSLSFALGTPILIALTSRLGRKSLLLGSLAVFIAGSLLSWASTGYALMLVSRIIL
GLSAGVYTVVAVSSVTKLVPPERMGGAISMIALGFGSAMALGVPIGIAITGWWSWQAI
FAGLAAVSLAVTLLLLRLLPQIEGDAPVPFRQRFSVLGNPVILSGLLISLLQNGSNSV
LLTYLTPYLQEVLHLDASLLGAVMLTLGLVGMLGSRLGGIGVDRWGSVFMLVSTIAFA
AVTLGLLPLVTASLTAGLLLVVLWFSSLFMSAPALQTYFIQQAPQSSNLVLSLNLSVI
HLGLAAGAGAGGAAVNWASTVHYNPWIGSLAALLSLLAAFVSFSLRKRKAGGGALTRA
AART"
misc_feature complement(<374293..375147)
/locus_tag="PM3016_323"
/note="Arabinose efflux permease [Carbohydrate transport
and metabolism]; Region: AraJ; COG2814"
/db_xref="CDD:32643"
misc_feature complement(<374665..375132)
/locus_tag="PM3016_323"
/note="The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that includes
uniporters, symporters, and antiporters. MFS proteins
facilitate the transport across cytoplasmic or internal
membranes of a variety of...; Region: MFS; cd06174"
/db_xref="CDD:119392"
misc_feature complement(order(374725..374727,374743..374748,
374755..374760,374794..374796,374803..374808,
374815..374820,374827..374832,374968..374973,
374977..374982,374992..374994,375001..375006,
375013..375015,375064..375069,375073..375081,
375088..375090))
/locus_tag="PM3016_323"
/note="putative substrate translocation pore; other site"
/db_xref="CDD:119392"
gene 375320..375658
/locus_tag="PM3016_324"
/db_xref="GeneID:11882318"
CDS 375320..375658
/locus_tag="PM3016_324"
/codon_start=1
/transl_table=11
/product="HxlR family transcriptional regulator"
/protein_id="YP_005310449.1"
/db_xref="GI:379718318"
/db_xref="GeneID:11882318"
/translation="MEQSCPEVQKHSNICDVLQILGAKWAFLVIDELQKGPQRFKQLQ
RSVAVVKTQSLTDTLRHLEQTGIVRREVFPTVPVTVEYSLTEKGQDFHGVLKEMDRWA
LKWRIRDSQA"
misc_feature 375365..375634
/locus_tag="PM3016_324"
/note="Predicted transcriptional regulators
[Transcription]; Region: COG1733"
/db_xref="CDD:31919"
gene complement(375850..377508)
/locus_tag="PM3016_325"
/db_xref="GeneID:11882319"
CDS complement(375850..377508)
/locus_tag="PM3016_325"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310450.1"
/db_xref="GI:379718319"
/db_xref="GeneID:11882319"
/translation="MSTNKPISRRHFLAYLGTGAATLVTAASGLDSLLTGSGTAKAAS
SLFDQETPVVTSGSLAGKPVSTDELTLPGGFQYDVIAAYGDVINTKGDTFGYDSTSAV
FLPENGSRVKGLLYVDHETSSPQWAHGSRSEGVYTAGQINSSLYNQGASVLEVYRGAD
GRWRMDTASPAARRITGLDPFELTGPARGAAAVRGAVQVQGTLGNRTGAVTLWGTVLT
SEGSWDGTCHDAGLDPSHYGWAAEIDPADPAFKLRKHTALGRFRHSGAPMKLTRDGRA
AVYMGDTAAESPLFKYISRGRFDENRGTANSDLLTDGALYAADLENGRWIELTVDAVK
EVLRSPGLDLPHAVKYTQEQLQALFREQADVLVHAAEAALLLGATPLGRQGDAALHPL
DGSLYVSLVDTSVHGQILRIVEEQGDAGASAFEFEITATGGPQSGFTSPGHLAFDRSG
RLWIAADVAPDRLLRSAFRRYGSNGLYVLDLKAPAGSGVTPFASAPVGAAFASPAFTP
GEQTLFLSVQHPGAASGEGTPQVSSWPHLPGSTAPRSALVAVRG"
misc_feature complement(375946..377325)
/locus_tag="PM3016_325"
/note="Bacterial protein of unknown function (DUF839);
Region: DUF839; pfam05787"
/db_xref="CDD:114509"
gene 377714..378172
/locus_tag="PM3016_326"
/db_xref="GeneID:11882320"
CDS 377714..378172
/locus_tag="PM3016_326"
/codon_start=1
/transl_table=11
/product="N-acetyltransferase GCN5"
/protein_id="YP_005310451.1"
/db_xref="GI:379718320"
/db_xref="GeneID:11882320"
/translation="MRMEPVRPEDEALLYSLYAGSRQEELDTWGWEPQARDLFLSMQY
RLQQQSYRSQYPESDHRIIVHEEQRVGHVRIDRSGDDLRLVDLSLLPAWRGRGIGTQL
LRELQMEAGAAGRCIRLSVLEGSPAARLYERLGFETVGQPSVYHQMRWKP"
misc_feature 377897..378073
/locus_tag="PM3016_326"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(377972..377980,378008..378013)
/locus_tag="PM3016_326"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 378337..378861
/locus_tag="PM3016_327"
/db_xref="GeneID:11882321"
CDS 378337..378861
/locus_tag="PM3016_327"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310452.1"
/db_xref="GI:379718321"
/db_xref="GeneID:11882321"
/translation="MSEAYIGEIRMFGGNFAPVGWAFCHGQLLPISQYDALFTLIGTT
YGGDGQTTFALPDLRGRAPVHQGQNPMTQSSFALGQTSGVENVTLNQGNIPSHTHPVR
AQKEPGTTGSPAGGLWAASAVNPYAVPGGTPSGTMHPAAVSPAGGNQPHDNMMPYLAV
NFIISLEGIYPSQN"
misc_feature 378340..378858
/locus_tag="PM3016_327"
/note="Microcystin-dependent protein [Function unknown];
Region: MdpB; COG4675"
/db_xref="CDD:34292"
misc_feature 378355..378525
/locus_tag="PM3016_327"
/note="Phage Tail Collar Domain; Region: Collar;
pfam07484"
/db_xref="CDD:203644"
gene 378897..379397
/locus_tag="PM3016_328"
/db_xref="GeneID:11882322"
CDS 378897..379397
/locus_tag="PM3016_328"
/codon_start=1
/transl_table=11
/product="tail collar domain-containing protein"
/protein_id="YP_005310453.1"
/db_xref="GI:379718322"
/db_xref="GeneID:11882322"
/translation="MSEDFIGEIRAFSFGYAPRGWMPCNGQLLAINLNQALFSILGTY
YGGNGQTNFALPDLRGRVPVHVGTDITLGMIAGEEAHTLTLNELPSHTHQIMASSSEA
STNQPAGAVWAKQTAAGYDTAAPNTVMGSAALSSAGSSQPHTNMQPYGVVQFCICVEG
IYPSRN"
misc_feature 378900..379394
/locus_tag="PM3016_328"
/note="Microcystin-dependent protein [Function unknown];
Region: MdpB; COG4675"
/db_xref="CDD:34292"
misc_feature 378915..379085
/locus_tag="PM3016_328"
/note="Phage Tail Collar Domain; Region: Collar;
pfam07484"
/db_xref="CDD:203644"
gene 379431..379952
/locus_tag="PM3016_329"
/db_xref="GeneID:11882323"
CDS 379431..379952
/locus_tag="PM3016_329"
/codon_start=1
/transl_table=11
/product="microcystin dependent protein, MdpB"
/protein_id="YP_005310454.1"
/db_xref="GI:379718323"
/db_xref="GeneID:11882323"
/translation="MEPFLGEIRMFAGNFPPKNWAFCNGQLIPLTQNTALFSLLGTMY
GGDGKTTFALPNLMGRAPIGFGQGPGLTNRTQGEAGGSAAVTLLNSQMPYHTHLAAAH
SSSTQSSPEGAVWSKTGGRQGPAAYAAAAPDTPMSPQALGIAGGNQPHNNRQPYLGVN
YIIALQGIFPQRS"
misc_feature 379431..379949
/locus_tag="PM3016_329"
/note="Microcystin-dependent protein [Function unknown];
Region: MdpB; COG4675"
/db_xref="CDD:34292"
misc_feature 379446..379616
/locus_tag="PM3016_329"
/note="Phage Tail Collar Domain; Region: Collar;
pfam07484"
/db_xref="CDD:203644"
gene 380025..385265
/locus_tag="PM3016_330"
/db_xref="GeneID:11882324"
CDS 380025..385265
/locus_tag="PM3016_330"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310455.1"
/db_xref="GI:379718324"
/db_xref="GeneID:11882324"
/translation="MNRTLAPNAASAASAAFRLMRWSLFCLWAVLVFLVVPDESAQAA
TFTVNHTADTVDAAPGNGVCADASDASGKCTLRAAIMESNALPGADTINVGPGVYTLI
LGGTGENGATTGDLDILGDLVLVGAGGNAEGDPAATVIQAGESSSTGIDRVIDINPNL
DLNTNVTIQALTVRYGRGTDEYGAGIAADSGSGTIRIYNSVITNNHNVVAGGNGAGLY
LSGGNPAGKLLVDKSRIDGNTSYNRGGGIFVEGVTPFIMTDTTVENNTATAGSGGGLF
LIGGGQRTIFSSTIAGNSAIGTAGSSLDGLGGGVYSISKLNLDNSTVSGNAAVKGGGG
LQLAYAGEGAYLVRNATIYGNTADSDNNASGSGGGIGVQAGTAAPLLHNTIVAGNRLG
SEAASDIFGSAAGGSSYNLIGTGGSGGLVTGAAGNQTGVSDLRLGALADNGGPTKTHA
LLAGSPALDAGTAAQAPGAADQRGTAFARTADAADADTASAVDIGAFEAHPSVEDLQD
VSMAMGGARQIEFHIGDADLGVDTVTAVSSDPQLIPNAAENLAVSGSGGARTLTVKPA
PGQSGSATITVTVSHPVGGALRSMTDTFLVTVAPQPDLAITKTHTGNFRKGQPGAYTI
TVTNVGSASTSGGITIEDWLPAGLTFLSVEAAGWSCEYGQEPTKCTSGKALEPGESFD
PIVLTVNVQEDAASTVTNRAVVSGGGDVNLDNNTALDSTVIKSSTSVSLNTSKTPSDY
GERVTWTANVSADTGTPIGTVTFKDGSDVLGVASLSSGKAVYSSDSLAVGSHSITAEY
NGSADYLGSVSPVVEQAVLSLATKTVVTALPTSSVFGQPVTFTAVVTAAAPASGTPTG
TVTFKDGDTDLGTASLDGAGVATLPVNGLIAGTHRITAVYSGSATFAGSVSEGLDYMV
ERATTTLLKSSVTESVYGEKVTLTAEVKSAGGTPTGEVILHSGSTELGRGALGADGTT
VISLIELVPGTYDIIASYSGDGLHAGSVSAPDLTLTVDRAATTTSVLSVSDAVYGESV
TLTAEVRVIEPGAGKVGGTVSFLRDGGLLGDAPLDAGGTAVLKDITLPLGTSAITAVY
GDGSPLYKGSISSPVEVTVRSPKLELDSYNYTLRLGENHTTVVRAVYGADDLRDVTGQ
SFFFSSNPSVAEVDAAGKVTAVGFGTANITVVYGSEQAVALVTVPIPNALNSNTALKS
LTLTEGMAVLVPGTDTYEATVGSGVGSIGIQAETEDAEALVSINGSTAVEGTASLTAD
LSEGLNTFDIAVTAPDGSKKQYSLKITRERSSTGGGDGGSDNGGGGDNDGGTGNSGSG
QPGETPKPEEPETPEVPWLIPVRPGGTVFVPLAVTVSHNGSTTVVSLSDGAVKDKLDG
KKGPKVFLIALPKGAQRSQIEISSGIMALIRSGHQASSVGIAADGASFDLPVRLFTPD
ALAKALGISAADAEKARILITVTAKAAPAGVDAASARLYDFSIVVEAGGRTYPYDQYK
GSYLAKAFGLKPSADVKKAAGITITGEATAYPVPFEKAEVEGSPVLVLKADHNGTFGI
ITQQRSFTDTDGTWAQDAIEGLSGRLVVDGYPDGSFRPEVPVSRSEFAAMLARALGWV
PDSSASVQYTDVDPAAWDAGYIASMSERGLISGYEDGSFRGSQRITREEAAVLLTRAL
AYVQTEAQSAGAGTGSTAAFADSGEVSSYAREAIAKAQAQGLLSGYEDDTFKPQGLTN
RAETVTLISKLLQLTGLAGS"
misc_feature <381810..381986
/locus_tag="PM3016_330"
/note="Domain of unknown function DUF11; Region: DUF11;
pfam01345"
/db_xref="CDD:110353"
misc_feature <383469..383579
/locus_tag="PM3016_330"
/note="Bacterial Ig-like domain (group 2); Region: Big_2;
pfam02368"
/db_xref="CDD:145488"
misc_feature 383628..383897
/locus_tag="PM3016_330"
/note="Cadherin-like beta sandwich domain; Region:
Cadherin-like; pfam12733"
/db_xref="CDD:205051"
misc_feature 384696..384824
/locus_tag="PM3016_330"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 384876..385007
/locus_tag="PM3016_330"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 385107..385211
/locus_tag="PM3016_330"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 385527..386108
/locus_tag="PM3016_331"
/db_xref="GeneID:11882325"
CDS 385527..386108
/locus_tag="PM3016_331"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_005310456.1"
/db_xref="GI:379718325"
/db_xref="GeneID:11882325"
/translation="MSRPREFNIECALQQCMEVFWTKGFKATSFEDLTRRTQVKKQSL
YCAFDDKRALFLKTLALYREQHAAKMEQFVSQEGSPLQKLEKIRDATFTPSAEGSCRG
CFMVNSALEFGISDEEVTRQVEMMFREVERMIEQLIRSGQEQQMITNRHTAEALAAHL
TNSLLGARMMEKSGASRERIEAVLRTSFALILP"
misc_feature 385563..386105
/locus_tag="PM3016_331"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature 385575..385694
/locus_tag="PM3016_331"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene 386132..387175
/locus_tag="PM3016_332"
/db_xref="GeneID:11882326"
CDS 386132..387175
/locus_tag="PM3016_332"
/codon_start=1
/transl_table=11
/product="NADH-dependent flavin oxidoreductase"
/protein_id="YP_005310457.1"
/db_xref="GI:379718326"
/db_xref="GeneID:11882326"
/translation="MMNTNASVQSLFRPFAFGNVTLSSRIVMAPMTRQYSPDGVPGPN
VVDYYRRRAENEVGLIVTEGTVVPHPDASNQANIPHFFGEAALNGWAKVVAAVHEAGG
RIIPQLWHMGAKGNVGEYTEEEVAAIVEAFAQAASEAKRIGFDGIELHGAHGYLIDQF
FWEQTNPRTDRYGGDVVKRTRFAVEVIEACRRAVGPEFPIVLRISQWKPTDYSAKLAG
TPALLEQFLAPLSAAGVDVFHCSTRRFWEPEFEGSELNLAGWTKKLTGKPTITVGSVG
LDGDFTNLFTNGEGAGNAKVDGLIERLEREEFDLVAVGRALLVDPAWASKLRDGRTDE
LTPFTPEALKTLV"
misc_feature 386162..387172
/locus_tag="PM3016_332"
/note="Old yellow enzyme (OYE)-related FMN binding domain,
group 5. Each monomer of OYE contains FMN as a
non-covalently bound cofactor, uses NADPH as a reducing
agent with oxygens, quinones, and alpha,beta-unsaturated
aldehydes and ketones, and can act as...; Region:
OYE_like_5_FMN; cd04747"
/db_xref="CDD:73406"
misc_feature order(386219..386221,386225..386227,386321..386323,
386450..386452,386594..386596,386750..386752,
387071..387076)
/locus_tag="PM3016_332"
/note="putative active site [active]"
/db_xref="CDD:73406"
misc_feature order(386219..386221,386225..386227,386321..386323,
386450..386452,386750..386752,387071..387076)
/locus_tag="PM3016_332"
/note="putative FMN binding site [chemical binding]; other
site"
/db_xref="CDD:73406"
misc_feature order(386588..386590,386594..386596)
/locus_tag="PM3016_332"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:73406"
misc_feature 386594..386596
/locus_tag="PM3016_332"
/note="putative catalytic residue [active]"
/db_xref="CDD:73406"
gene complement(387296..387730)
/locus_tag="PM3016_333"
/db_xref="GeneID:11882327"
CDS complement(387296..387730)
/locus_tag="PM3016_333"
/codon_start=1
/transl_table=11
/product="N-acetyltransferase GCN5"
/protein_id="YP_005310458.1"
/db_xref="GI:379718327"
/db_xref="GeneID:11882327"
/translation="MQRTVRLACPEDADGLVRLNREFNGVVDITAEEVSRSLRLGPEL
VAVAILDGVLSGFACAQSFTSFCYRERQAEITELFVMETARGQGLARELLLLLEEHLR
RQGVQSIKVITGGSNEAALKTYVRSGYIPKEHAVLYKELGSV"
misc_feature complement(387344..387589)
/locus_tag="PM3016_333"
/note="Acetyltransferase (GNAT) family; Region:
Acetyltransf_1; pfam00583"
/db_xref="CDD:201324"
gene complement(387750..388391)
/locus_tag="PM3016_334"
/db_xref="GeneID:11882328"
CDS complement(387750..388391)
/locus_tag="PM3016_334"
/codon_start=1
/transl_table=11
/product="type 11 methyltransferase"
/protein_id="YP_005310459.1"
/db_xref="GI:379718328"
/db_xref="GeneID:11882328"
/translation="MGTFFARHYDALMGWLEKRGFTRIRANLLREASGTVLEIGSGTG
LNFPLYHGCDKVVALEPSEVMRRTSMKRALIAPVPVEPVGGDAQNLPFADASFDTVVG
TLVLCTIPDPLRALREIRRVCKPGGTVLFFEHVRLEHAALGRLQDWLTPAWKRLCDGC
CLNRSTLDTLQQAGLEIKRTERYYGDIFVTVVARNPEAGSGDASASRTGAFES"
misc_feature complement(387870..388289)
/locus_tag="PM3016_334"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature complement(387981..388289)
/locus_tag="PM3016_334"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(388083..388085,388131..388139,
388209..388214,388257..388277))
/locus_tag="PM3016_334"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene complement(388436..388765)
/locus_tag="PM3016_335"
/db_xref="GeneID:11882329"
CDS complement(388436..388765)
/locus_tag="PM3016_335"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310460.1"
/db_xref="GI:379718329"
/db_xref="GeneID:11882329"
/translation="MSDLAKTPQPPYYAVIFTSERTAGDKGYGRMADLMVELASQQPG
FLGVESARDAGGLGITVSYWSSLEAIRAWREHALHQTAQEKGRTDWYERYALRVSKVE
RDAFFEM"
misc_feature complement(388445..388732)
/locus_tag="PM3016_335"
/note="Uncharacterized enzyme involved in biosynthesis of
extracellular polysaccharides [General function prediction
only]; Region: COG2329"
/db_xref="CDD:32481"
gene 388982..389944
/locus_tag="PM3016_336"
/db_xref="GeneID:11882330"
CDS 388982..389944
/locus_tag="PM3016_336"
/codon_start=1
/transl_table=11
/product="transmembrane lipoprotein"
/protein_id="YP_005310461.1"
/db_xref="GI:379718330"
/db_xref="GeneID:11882330"
/translation="MEPLTTRGALPMEKPRRSGGFWQTMGRQKYLYFMSVPFVIWLIV
FSYVPIWGWLMAFQKFRPGRSIFEQNWVGLANFAELFADERFYLVLRNTLAMSVMGLV
VGFTVPIIFALLMNELKGQFFKRSVQTISYLPHFVSWVVVAGLVTKMLSTEGGAVNSL
LLSLGVIDAPVQFMAKGEWFWSIVTASDMWKETGWNSIIYLAAMAGIDPELYEAATVD
GAGRFRKIWHITLPGIRPTFMVLLILSIGHLVSIGFEKQFLLGNPLVIDYSEVVDLYA
LNYGIGLSRYSYGTAIGIFNSVVSIVLVLTANGIYKRLTKESII"
misc_feature 389012..389938
/locus_tag="PM3016_336"
/note="ABC-type polysaccharide transport system, permease
component [Carbohydrate transport and metabolism]; Region:
LplB; COG4209"
/db_xref="CDD:33938"
misc_feature 389249..389884
/locus_tag="PM3016_336"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(389297..389302,389309..389314,389327..389329,
389360..389371,389375..389404,389459..389464,
389468..389470,389543..389548,389558..389560,
389564..389566,389573..389578,389582..389584,
389594..389599,389606..389608,389657..389659,
389699..389704,389711..389713,389732..389743,
389750..389755,389792..389797,389834..389839,
389846..389851,389855..389860,389867..389872,
389879..389884)
/locus_tag="PM3016_336"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(389378..389410,389459..389470,389732..389749)
/locus_tag="PM3016_336"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(389468..389470,389528..389530,389750..389752,
389786..389788,389795..389797,389834..389836)
/locus_tag="PM3016_336"
/note="putative PBP binding loops; other site"
/db_xref="CDD:119394"
misc_feature order(389609..389647,389663..389668,389678..389680)
/locus_tag="PM3016_336"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 389957..390850
/locus_tag="PM3016_337"
/db_xref="GeneID:11882331"
CDS 389957..390850
/locus_tag="PM3016_337"
/codon_start=1
/transl_table=11
/product="binding-protein-dependent transport system inner
membrane protein"
/protein_id="YP_005310462.1"
/db_xref="GI:379718331"
/db_xref="GeneID:11882331"
/translation="MTWARKSLSDRLFDLVLYAAMIFTVVVTLYPFLNVLAISLNDST
DTVRGGIHIWPREFTLKNYETIFQYSGLMTGFRNSVIRTLAGTLIGVISASMVAYVLS
REEFQARRLFSMLFALTMYFSGGLIPVYMLMRDLSLLNSFWVYLIPGLLSVWNVFIIR
SYINGLPYALQESAKIDGANDFTIYWRVVLPLCQPVLATVALFIAVGQWNSWFDTYLY
NSSNESLTTLQYELMKVLQSTQNNADAARNPNMAQNIAAVSPESIRMAITIVVTLPIL
LVYPFLQKYFVKGMTLGAVKS"
misc_feature 389966..390844
/locus_tag="PM3016_337"
/note="ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism]; Region: UgpE;
COG0395"
/db_xref="CDD:30744"
misc_feature 390182..>390586
/locus_tag="PM3016_337"
/note="Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
transporters which generally bind type 2 PBPs. These types
of transporters consist of a PBP, two TMs, and two
cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
cd06261"
/db_xref="CDD:119394"
misc_feature order(390230..390235,390242..390247,390260..390262,
390290..390301,390305..390328,390335..390340,
390344..390346,390410..390412,390416..390418,
390425..390430,390434..390436,390446..390451,
390458..390460,390509..390511,390551..390556,
390563..390565,390584..390586)
/locus_tag="PM3016_337"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119394"
misc_feature order(390308..390328,390329..390346,390584..390586)
/locus_tag="PM3016_337"
/note="conserved gate region; other site"
/db_xref="CDD:119394"
misc_feature order(390461..390499,390515..390520,390530..390532)
/locus_tag="PM3016_337"
/note="ABC-ATPase subunit interface; other site"
/db_xref="CDD:119394"
gene 390931..392601
/locus_tag="PM3016_338"
/db_xref="GeneID:11882332"
CDS 390931..392601
/locus_tag="PM3016_338"
/codon_start=1
/transl_table=11
/product="family 1 extracellular solute-binding protein"
/protein_id="YP_005310463.1"
/db_xref="GI:379718332"
/db_xref="GeneID:11882332"
/translation="MMRRLTKWVSVMLAAALVTVTGCSKEPAAEPGQASGSGTDPITM
SVFSADPNPAWNNMQDEVGKKLTEKTGVTLKMEFPVGSSDQKIPLMVSSGEYPDMILP
KGDPGKLVAADALLDLTDLIEQHGPNLKKVYGKYMKRLRWSTEDPSIYILPISPVDQE
YFDAGGGFELQHAVVKELGYPKIRTVKDFENAIKAYKDKYPTIDGKPTIGLSLNADDW
HIMISVTNPAFLTTGAPDDGEYYIDPKTYEAKFHYFRPEEKEYFRWLNHMNNIGLIDP
ESFVQKYDQYKAKIASGRVLGLIDQDWDYQEAQNVLRKEGKFERTYGHYPVTLNESFK
DHSFQDTGYLAGYGIGITKSAKDPVRAIKFLDYLASDEGQVLINWGIEGVHYKVENGM
RVIPPDVLDKKVNDANNFAKTSGIGQYYISARYGDGVKDPTGSTYTTTTVEQKIASYS
EADKETLKAYGATTWKDLFPKKEEFPVKPWGAAWSIPVEPDSNVNVTYNKAKTIVWKR
IPEAILAKPEQFDAIYDGMLQELDKVGVKKMEQEYTELVKERVKLFNE"
misc_feature 390931..392079
/locus_tag="PM3016_338"
/note="ABC-type sugar transport system, periplasmic
component [Carbohydrate transport and metabolism]; Region:
UgpB; COG1653"
/db_xref="CDD:31839"
misc_feature <391447..392052
/locus_tag="PM3016_338"
/note="Bacterial extracellular solute-binding protein;
Region: SBP_bac_1; pfam01547"
/db_xref="CDD:201851"
gene 392850..395174
/locus_tag="PM3016_339"
/db_xref="GeneID:11882333"
CDS 392850..395174
/locus_tag="PM3016_339"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310464.1"
/db_xref="GI:379718333"
/db_xref="GeneID:11882333"
/translation="MKFSDGFWMTREGYQLIPAVQVFSVTAEERSVTVLVAPRDVSRR
SGQLDCPLLTIRYYSPQPDVIGVKIEHFAGVQQAGPDFELQRSETHEVTVERGDGVVT
LTAGRVSVKVREAGDWSAVFYQDGRRITGSGSKAAAHVSGPDGDVHVKEELDLGVGEL
IYGLGERFTPFVKNGQTVDIWNRDGGTSSEQAYKNVPFYLSNRGYGVFVNQPELVSFE
VASEKVSKVQFSVPGESLEYYVIGGPSGKEVLERYTTLTGKPALPPAWSFGLWLTTSF
TTNYDEETVNSFVDGMRERDLPLHVFHFDCFWMKAFHWTDFQWDPEVFPDPAGMLKRL
KEKGLHICVWINPYIAQQSRLFAEGRERGYLIKRPNGDVWQWDRWQPGQGIVDFTNPE
ACEWYAGYLRELVDMGVDSFKTDFGERIPTDVVYHDGSDPQRMHNYYTHLYNKVVFDV
LEEKLGRGQAVLFARSATAGGQQFPVHWGGDCFASYESMAESLRGGLSLGLSGFGFWS
HDIGGFESTSSADVYKRWTAFGLLSSHSRLHGNVSYRVPWAFDDESVDVMRFFTQWKC
RLMPYLFGGAVEASQKGLPLMRAMLLEFGDDPTAGYLDRQYMLGDSVLVAPVFNEEGR
ISFYLPQGRWTHLFTGETVEGGTWREEEHGYMSLPIYVRPGTLLPVGADASRPDYDYA
DGVELQLFELADGATAERVVYSTQAAEVLRVSVTRSGGSLSVRAEGESAGAWSLLLRG
VDSAGAEGAAAERTPLGVRLTPEAGRREWSVRLA"
misc_feature 392850..394844
/locus_tag="PM3016_339"
/note="putative alpha-glucosidase; Provisional; Region:
PRK10658"
/db_xref="CDD:182624"
misc_feature 393321..393503
/locus_tag="PM3016_339"
/note="Galactose mutarotase-like; Region: Gal_mutarotas_2;
pfam13802"
/db_xref="CDD:205975"
misc_feature 393621..394553
/locus_tag="PM3016_339"
/note="YicI alpha-xylosidase is a glycosyl hydrolase
family 31 (GH31) enzyme that catalyzes the release of an
alpha-xylosyl residue from the non-reducing end of
alpha-xyloside substrates such as alpha-xylosyl fluoride
and isoprimeverose. YicI forms a...; Region:
GH31_xylosidase_YicI; cd06593"
/db_xref="CDD:133124"
misc_feature order(393762..393764,393879..393881,394086..394088,
394092..394097,394242..394244,394281..394283,
394290..394292,394389..394391,394464..394466)
/locus_tag="PM3016_339"
/note="active site"
/db_xref="CDD:133124"
misc_feature order(393780..393785,393900..393905,393927..393929,
393966..393968,393972..393974)
/locus_tag="PM3016_339"
/note="homotrimer interface [polypeptide binding]; other
site"
/db_xref="CDD:133124"
misc_feature order(394092..394094,394290..394292)
/locus_tag="PM3016_339"
/note="catalytic site [active]"
/db_xref="CDD:133124"
misc_feature order(394296..394298,394305..394307,394320..394322)
/locus_tag="PM3016_339"
/note="homohexamer (dimer of homotrimers) interface
[polypeptide binding]; other site"
/db_xref="CDD:133124"
gene 396679..404874
/locus_tag="PM3016_340"
/db_xref="GeneID:11882334"
CDS 396679..404874
/locus_tag="PM3016_340"
/codon_start=1
/transl_table=11
/product="WD40 domain-containing protein"
/protein_id="YP_005310465.1"
/db_xref="GI:379718334"
/db_xref="GeneID:11882334"
/translation="MKRKRSKLWKRGTALLLATTMVLGDLGAAAAVGPEEFDPASVIT
ADTIMDAVYGPEGGIAVPPPVPPAPQPILVPQPVAAGEPLSWNLLTKVDRSKIPSIYF
PEDQVLKMSADGRYIGFKRFELVTEEPAHVNKVITVYDRKTGAMDDIQSPPNHSQNDE
VIYFDMSSDARYVAFSYMSYTEDWKEKTKVYLFDRETRNLTPITTVEGSTDSHEGTDR
VAISADGRYVAFDSDAPGIVAEDTDDLRDVFVYDRESGATQRITAFPEMGEYDYGDSE
APTISADGRYIAFHSDSKFVEKDTYGQTNVYVYDREDSNARPQLVSIGVGGAAGEGHS
TLPSISADGSVIAYESTAENMVSGDFNEMKDIFVYNRNTAVTQRVSLAEGGIPFNRDS
MSPSISRDGRYVGFHLDYVWVEDTDDDHDNDDENDIPEEAYVAEVASQTAYPVTVPQA
PYRLLNPSQSPIVGDGGKLVVYLSEYFYSYTGGSEGTPFPGTFIAEKGTAPVWPAGSK
LEPSNRTGDSVTLSWPDAVDATGILGYHVYQDGKNIGYVEYRGTGSNTFTAEGLLPVY
EPEFQVEAVNSAYRESYGGPTYKLGAGGGENPAGELRVLWDVEDMRYNMAFPGSMVGL
SAYGEPGKQVSAELTYMAWKNETEQETRTESIPLTEGAAGTYKAQWKMEEGVSQLTSL
NVKLTDPAKPGTVLEKPAAGFPVQVAGAVELSFTNPSGASLTGSLLTSTSRQYGQQIA
LLPNSDAYVVNGLYPGKDHSFTLRSPDGRHTWGSLEQVQVEGGKRSKISMNIEQPAQL
RFQVVDPTGQPVSGVGLQLFGPGQSYIDASSTYGDGWTSWTDYMKAGDSVTAKVDIGD
RMYEQPANQEVILKPGANEQVIKLRAPGEGLVEGFVKGPDGKGVRNAYIASTQTFKGQ
PVVRRTRTNLEGAYRLSLLEGEAKIEVFETSYMYGTDGPVTVLVTEGGTTTLDLPVKQ
PSKGIVNTEVRLKYLEDTDFGPPVNMEEMTFLTRIESKRGWMSGYFQNAHQFYGLPGD
TVSVCVTGSVPSYMTSCTDVVLDQDGNATAKLFLEEKGARIQGKLAQTHHRWVSGGLY
KLKDQGYRSAASYLGDNDFEADGSFNINVPEAGTYVMELNGALPGSPLKYEYATVQFT
VSDRQILQVGSVSFSSKSFFSNYYGNYYNALSSRIAPGGTVTMRAGYKNSSGVDASEA
KLLIDIPEGTTPVKDAAGRIVVSGAQLAGDPVLDGQTLILPVGTVAQTQSGTLSFQLK
VDPAFNKSSAKSSARIRARMGVEQIEESIGSVLLDAPLVTLEAPERVSKPVDSSAPVI
KLSGVAPAGSQVNVYDGKLLLGSAAASNTGFWLMAVQELPDLGDPGVHAIRAEVDSNG
VKLQSPVSYVHYDNVKPQLLELAMAQAPEGRWMTLNLREGIPNQPYTVVPGNPFQFEL
KFDKPDEVENVEIYLEGQSGEPVKAVREGGIFRALTPTDKGALGAIYVDYDVKPKPFV
LDDKQPTLDELRETLPPTMRDFTAEVTAPFELKDGKYAGTVELTFPQLPGLKITEKLS
ISPDAKYTASPQEIELAQRSGLPMLNGSVSVTETDDGFKTVSSGYMPMKLLFPSGVPG
SLKSALAAKVRALAADEGPDFGTLADVSVETYVQYGEGGEDAGTVYKIKKQYEDSMEF
AEKINKIAYKVEVSGMDCIQELPTTVKQAGKALVAVVGGEISKVALGAWTGAMGLTGP
GAIAAAGASAVIEDKIDNYVDEQIDAIGTGYNQCRDEDEEKKRKRKKIARLRWIYDPS
GYVYEAVPANRLSSVKATVLYQEPASKEWVVWDAGPYEQVNPHDTDDQGKYGWDVPEG
KWKVVWEKDGYETQSSAELDVPPPHTEVNAGLVSYEAPKVQSVTGVTAAAGSYVDVEL
TKYVKVTDAAAAAQAVTVTGPDGSPLEGSAAFVEPADNPADAEGADLSRILRFTSKTS
LTPGTGYSVKVNAAFQSYAGVWMAEGHSGTFEVGTRDEEGPTAAGDEVNAEGEGSILR
VKFNEKLSSTVDAAKFTLNGSSDSIVSAVRALKPNPEGELTAVDGDYEQTVVLTLSES
LAPGTEAQLGILAGAVSDTAGNAAVPKTLKVVSAAGESSNAALASLAVEEGALAPAFD
PSVRSYKVEVPSAAETVNLTASLADASAQLVIDGTIAASGVRKTVRIPDTGIIAVRVT
AADGTTVREYSVEVVRGTTDPLGTEASLSALTVTPGTLSPVFEPAVETYDVEVAANVT
ELQIAATAQDSKAKSITIAGEAAVSGTAKTVAIPAGGQIEVVVTAEDGVTKRTYKVAV
SRKTDSGSGGDNSGGGSDSSGGGSVPPAKPALTQQEAFTGASGGKGIRVTLRRSDAIA
SALQTGTDGQKQLLIEVKEQADEFMLQLSADTLAKLTESQAGVLFKTTRLQASIPSAL
LASVQLPAGAHLSFSMGAASAAEQTAAYEAAALQSDALKPSGQAVSVKLEMIQDQKAS
LLTFGHPVMVELPVQGSGQEAVYRFDPADAKWAFVWKQRQVSGSRSAIEADASGTYAV
MAYADPFDDMKDHWASSDVGWMARRLLVSGAAPGAFHPDHSVSRAEFAALLVRALDLK
AVATVGYQGFSDVPEEAWYAADVRRAAEAGLLQGVADNRFAPDALITREQMAVLIWRA
NVYLREAAGEQAGAGHALKQFKDQGSISSWAEAAAAAALEAGLIQGTAADTFDPQGSA
TRAQAAVMMKRLLQLGSGQ"
misc_feature 398188..398412
/locus_tag="PM3016_340"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:28945"
misc_feature 403027..403299
/locus_tag="PM3016_340"
/note="Cadherin-like beta sandwich domain; Region:
Cadherin-like; pfam12733"
/db_xref="CDD:205051"
misc_feature 403330..403602
/locus_tag="PM3016_340"
/note="Cadherin-like beta sandwich domain; Region:
Cadherin-like; pfam12733"
/db_xref="CDD:205051"
misc_feature 404308..404436
/locus_tag="PM3016_340"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 404494..404622
/locus_tag="PM3016_340"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene complement(405300..405791)
/locus_tag="PM3016_341"
/db_xref="GeneID:11882335"
CDS complement(405300..405791)
/locus_tag="PM3016_341"
/codon_start=1
/transl_table=11
/product="DnaJ domain-containing protein"
/protein_id="YP_005310466.1"
/db_xref="GI:379718335"
/db_xref="GeneID:11882335"
/translation="MLNREREERRRHGHQGEQEAAERPIIPLPKETLEDRDVILHAQL
EQHRLANEAYEEFVKNGGLEKLPGFGKPIEVPTGDILASIMKQARVQPPFMMLRTEIR
KNMELAMELLKQDPGSPEIDAALDDANKQITELNYQAPSLSLHRRKLTRENLQEQYER
WYR"
misc_feature complement(405471..405647)
/locus_tag="PM3016_341"
/note="Domain of unknown function (DUF1992); Region:
DUF1992; cl08096"
/db_xref="CDD:195654"
gene complement(406024..407289)
/locus_tag="PM3016_342"
/db_xref="GeneID:11882336"
CDS complement(406024..407289)
/locus_tag="PM3016_342"
/codon_start=1
/transl_table=11
/product="protein-L-isoaspartate O-methyltransferase"
/protein_id="YP_005310467.1"
/db_xref="GI:379718336"
/db_xref="GeneID:11882336"
/translation="MTKSTERIEALRKLAVPLKEKAALDDLVKAASSARCVLLGEASH
GTSEFYTLRAELTKRLITEHGCRIIAVEGDWPSCFSVNRYIKGLPGAAGSAAEALAAF
DRWPEWMWANHEIGDLVEWLKAHNASLPPERQVGFYGLDVYSLWESMDEILQYLERTG
SPNVEEARAAFECFEPFGGEGQSYGISASLFGEGCEDEVVALLAKLRTERTRSEDPQE
EALDAEINALVAVDGERYYRAMITHDAESWNIRDRHMTEVLHRILNFHGPDAKAVVWE
HNTHIGDARATDMFTDGMVNVGQLAREQMAPGEVYAIGFGTHRGKVMAGTSWGSPAQV
MDVPQGISGSWEDLLHHAVGEDCVLLLKDAPAVLRETIGHRAIGVVYRPTHERGNYVP
SRLPDRYDAFVHVEVSQAVRPLAGEPVFA"
misc_feature complement(406048..407226)
/locus_tag="PM3016_342"
/note="Erythromycin esterase homolog [General function
prediction only]; Region: COG2312"
/db_xref="CDD:32466"
misc_feature complement(406072..407088)
/locus_tag="PM3016_342"
/note="Erythromycin esterase; Region: Erythro_esteras;
pfam05139"
/db_xref="CDD:203176"
gene 407538..408116
/locus_tag="PM3016_343"
/db_xref="GeneID:11882337"
CDS 407538..408116
/locus_tag="PM3016_343"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310468.1"
/db_xref="GI:379718337"
/db_xref="GeneID:11882337"
/translation="MQIEDKEIVEYPSTLKLAGLSIGAAIFVAGGAGLFAWGQEEEDL
ELVVVGAAGVLFFGGALLYLLYRLLRRRPSLMINAEGIVDHSSYTGGGRIRWEQIKDM
TVYELMGQRFIGLELHDPEAFLAKQTPFKRILLRMNRGLVEAAVNIPQTGVQMPLDEL
HAVMMERWNAASRRKEEAGLETQFGAARRQSD"
gene 408369..409118
/locus_tag="PM3016_344"
/db_xref="GeneID:11882338"
CDS 408369..409118
/locus_tag="PM3016_344"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310469.1"
/db_xref="GI:379718338"
/db_xref="GeneID:11882338"
/translation="MSYRIQATEKTPALILYLLDISRSMTLPMGGRRRLDIALDSLTA
SLKQMVFRSTKGGRLSPRYRVALIAYSDAVYDLLGGIRPIDEVARKGIPDLVPQRLTE
TAEAFAYAEKLLLAELPGLDGCPAPLVCHITDGTPTGADPEPVVRRIMDMTVPDGAVL
VENIFISEHLLAEPVGDVRSWGGIQDDTPFLDETAVRLRRMSSRIPESYLELLHDSGY
PLAAGSYMMLPGSSAELVGLGFQMSSATPVR"
misc_feature 408411..>408800
/locus_tag="PM3016_344"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cd00198"
/db_xref="CDD:29222"
misc_feature order(408426..408428,408669..408671,408768..408770)
/locus_tag="PM3016_344"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:29222"
gene 409118..409960
/locus_tag="PM3016_345"
/db_xref="GeneID:11882339"
CDS 409118..409960
/locus_tag="PM3016_345"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310470.1"
/db_xref="GI:379718339"
/db_xref="GeneID:11882339"
/translation="MNTYEYRLDPAEDVPLTTVVVGPALYRFAARRADESRLAGEPSQ
DDLVLRADETGASFCICDGVSLSFFGGLAARLLGDALLEWCASGIPAKAGEPQVRLSL
ERLLADLTHTAGEAVRSHPLPNSAAGLLREVLEDKRRLGSEAMFVFGRVDFPCTAYPA
GRLVLGRMGDIRIRFAAADGQWESSLTGFTEQRWSTRRGAVGGRPAVLITELPAARSG
LTVYTDGWAAFCDGVTTLPPEGPDPWCAARDGEELPADDDQLFFQMQWQMEPPPDHEE
EASS"
gene 409957..410301
/locus_tag="PM3016_346"
/db_xref="GeneID:11882340"
CDS 409957..410301
/locus_tag="PM3016_346"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310471.1"
/db_xref="GI:379718340"
/db_xref="GeneID:11882340"
/translation="MNRIMTLSMDRQEVDVEVPDDVPVGRLLPLLAEAAGTAVTGGER
LLLEASQPGEAWRILSPGRTLSDEDIRDGAFLRISLTPAAPEDTSGPEKAEAGQEDSS
GLPVAGWKPLFS"
gene 410367..414437
/locus_tag="PM3016_347"
/db_xref="GeneID:11882341"
CDS 410367..414437
/locus_tag="PM3016_347"
/codon_start=1
/transl_table=11
/product="FtsK/SpoIIIE family protein"
/protein_id="YP_005310472.1"
/db_xref="GI:379718341"
/db_xref="GeneID:11882341"
/translation="MQRPQYFQRSPRIKKGIPYGTVEVHRPPAPPAPPKLSLISMLLP
AGMTAASVLLLVMLNPNQNSSYLVVQLISMSTMAVSYLVPFLTHLSNKREYKREKAER
ESKYEAQLESHRKELEKVRELQKSVMLDTDPPPEECVRRIREWSGEVWNRSPQEEDFL
HLRLGVGDQPFCIRIKAPEQDGYEKEPLIEASQKLDDDYRTVSHVPVQLPVFESKVIG
IVGDRQAAENMVRVLALQLAAHHAPDEVKVGAFFGEEEARRWEWMRWLPHTWDDDRKT
RYLAKDMSTTRQALDALYHVLHPRKLASSPGREAEMKLPAWVFFLSDIRPMEDEPLVH
LLLREAEALSACTFILSDRRETLPKECGMILEVTLGEGRLLETASGQSGVTGRERYFI
PDRITLEQADEAARLLAPYRLRKSAAGELPRVLTLYDMFGVRETGELSAAAHWSKNRY
PDTLPVTVGVRAGGKPVQLNIHDKIERRGHGPHGLIAGTTGSGKSEVIQSLIASLALQ
FHPHELAFMLIDYKGGGMSNTFALLPHLIASITNLEGKGVMDRAQVSLKAELARRQRI
LNAAGNLQHIDEYYRSPYRDKEPLPHLVIVIDEFAELKKEQPDFMSELISIAAIGRTL
GVHLILATQKPAGVVDDKIWSNARFRICLRVQDEADSRDMLRVPDAARISNPGRGYFQ
VGSNEVFELVQFAWSGAPYRPEAAAAAVEAEAYTVALNGTRHRCAAPAAASRAGDRLD
ERKQLQVFIDYLAETARAEGIEPLPGPWTPPLPAELFLGDLRDGSSGWNGAGWQPAEG
WLQPALGLIDDLANQVQRPLCFPLEEGHLLIYGMPGTGKTTMLQTLLLGLASEHHPED
VQFYVLDFGRMLKDFDPLPHTGAVIQQEEAEKVRRLFRFLAGQLDQRKQLFSEAGVKS
LETYRKVTGSAMPALFTVMDGYLSFKDSYPDEHDRWEALLREGASLGLYFVVTANRVS
DMFDKIRSNFPLAFSFELADPSDYYFAVGRPVRPLSQAPEGRGLLKGAVPPLEGQIAL
PAGGADEFERTRAIRETVKRMSEAWNGPRAFRIPVLPEIVSLGALLDGEYGGAADGGA
ADRPGAKEAVLRVPVGLETEELTLFCPDLRDGPVFVVGSRMEGGKTALLSSWVLALAG
ANRPEALQLVLADFRRTPSGLYALRQLPHVTGCAVDEDSLLTLLGPLREELERRKFLL
QSEGDGAVGASFPAIVLAIDDGEAVARQIGMSYELQGHLEWILKQARGLGVYILFGCI
PAEIGNCFDSWTGPVKSAQTGFLLGTTESADLNLFNLKLPYAETGKSLPSGEGFYVRR
RHAPFKGALPFTGGAGPEEWVRRITESVGPMTGRMS"
misc_feature 410382..414335
/locus_tag="PM3016_347"
/note="type VII secretion protein EssC, C-terminal domain;
Region: T7_EssCb_Firm; TIGR03928"
/db_xref="CDD:188443"
misc_feature 411711..412277
/locus_tag="PM3016_347"
/note="FtsK/SpoIIIE family; Region: FtsK_SpoIIIE;
pfam01580"
/db_xref="CDD:190044"
misc_feature order(411828..411833,411843..411851)
/locus_tag="PM3016_347"
/note="Walker A motif; other site"
/db_xref="CDD:29986"
misc_feature order(411831..411833,411843..411851,411918..411920,
411924..411929,412158..412163)
/locus_tag="PM3016_347"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29986"
misc_feature 412146..412160
/locus_tag="PM3016_347"
/note="Walker B motif; other site"
/db_xref="CDD:29986"
misc_feature 412743..413285
/locus_tag="PM3016_347"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 412857..412880
/locus_tag="PM3016_347"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature 412860..412883
/locus_tag="PM3016_347"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
gene 414451..415401
/locus_tag="PM3016_348"
/db_xref="GeneID:11882342"
CDS 414451..415401
/locus_tag="PM3016_348"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310473.1"
/db_xref="GI:379718342"
/db_xref="GeneID:11882342"
/translation="MRIRVSPEQLGQVALQFQQAQHQSQTSIARMRGAIGRLESQWSG
VTREEFYQSFQRASQIMNRYLETLQKIEGDLKQISQRFADTDKKEDSSSELLKKAIIS
GLSTAGKLGFVASALKVSANAKRADLVDIAVRDWVKNGKVAEVWSKLLPVKSVNTPQK
MAAKLGNIDHTLPGSSIKATNMAKHIRGQLKPFGLVGVALTSVGEVKPLVSSIQSDIA
KYDGLEAAGHVATDVAYSTTKVAATVGASYAGAVGGAQAGAFLGSFVLPPIGTAVGGI
AGAIIGSSLGGAVVSETIENLVPRERFKSGVQKLKGLLGL"
misc_feature 414454..414705
/locus_tag="PM3016_348"
/note="WXG100 family type VII secretion target; Region:
WXG100_ESAT6; TIGR03930"
/db_xref="CDD:211892"
gene 415458..416255
/locus_tag="PM3016_349"
/db_xref="GeneID:11882343"
CDS 415458..416255
/locus_tag="PM3016_349"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310474.1"
/db_xref="GI:379718343"
/db_xref="GeneID:11882343"
/translation="MSASTIKVSLEELALLLHLNDRDEESKLMLGIAYEELTPKEVEN
IFVTASHSLLVRDLLLMAGDGEKLCIASTLKEALDVTGAPEGTLFFQRVDTGLQTSYT
GHLHRKGSSYVSYQSLDGIVHTFKDMGSREGLAEEGMSLLGLRIKGDAENGGPLAELP
ARLVNNLAGLTSEQAAESREALVSGGFTTELADRFLEDAQHAASIYSVMKLEEGETHE
LRADRGLIVIESEQTQWLLYPNGQGNGFTVSKLSDALFRAQIQGLDL"
gene 416275..416526
/locus_tag="PM3016_350"
/db_xref="GeneID:11882344"
CDS 416275..416526
/locus_tag="PM3016_350"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310475.1"
/db_xref="GI:379718344"
/db_xref="GeneID:11882344"
/translation="MSKKSDGDFFESGFGKFLIGVAAAIGAIYTFLLAASKYFMITVM
VCMAGGVVYLLFLKEVFYALMLLVPLLIWYAMYRHFTSK"
gene 416745..417017
/locus_tag="PM3016_351"
/db_xref="GeneID:11882345"
CDS 416745..417017
/locus_tag="PM3016_351"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310476.1"
/db_xref="GI:379718345"
/db_xref="GeneID:11882345"
/translation="MAKILVSPETLQQASNTFKQGGAESQAQVQKLKATINGLQGQWE
GMTQQKFFADFQQAESMMKNYVELLHNISTQLDTIAQRFRQADGQG"
misc_feature 416751..417005
/locus_tag="PM3016_351"
/note="WXG100 family type VII secretion target; Region:
WXG100_ESAT6; TIGR03930"
/db_xref="CDD:211892"
gene 417165..419855
/locus_tag="PM3016_352"
/db_xref="GeneID:11882346"
CDS 417165..419855
/locus_tag="PM3016_352"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310477.1"
/db_xref="GI:379718346"
/db_xref="GeneID:11882346"
/translation="MSFQPEAGEELRTAHSRYIIAEHPAAPGLPYGQEGRQGTVYRLD
DPEGGPSRALKVFRPRFRQPFIAEQAHRLAPYASMPGLSVCGRTVWVPGDSEGPPGQP
GLDYAVLMPWIDGPTWTDVLLDRQELAQETCLQLALALSKILFDLERSGMAHGDLSSA
NLLLPALLGTAPSRSGYPVELIDVDTMYHPDAARPEVLPQGTPGYARSGAQQTGAWSP
EADRFAGGVLLAEMLAWADPSVRREAYGDSYFDPVEIGTPCRRAELLEDAVRALWGEE
AAALWSRVWHSSREEEAPGFKAWYLLLNRIHKEPAARMEPVRQEEQPMEEMIIIGGEP
DEGLQTRLEAHNLGKAAVYPELGAFLSDIEQGRGPLRSCRLIVLHASSDQGRKEAERL
QQTLLQSGGTGSSRPALYLVISRMSLYEQFIELDELLAYDNACAVFLPGMDGGQLVRL
LSGEYDRDGIRHPRFSGPPQAAGGGLGRPAEAGRRQPLADTPMRTADPQPPDAGRPPE
GQAAARSGPQAPDAAQVQPSSGRWGAPEERELSRAAQPQAAPEAERTRREPLPEQPRE
PEAPPEPPKETKRGGLWGLKDKLSIRFDADERGRGPQAAPEKERLSGKSFLWSREKKV
KLPKHGSILVTGDRGSGVTSTAVNLAHLLSGYGTVALLDFDYKRKGVSYLFPDTVKRQ
TDERQSFGLYALLNNPRLFEDVMFVEHEQLSFVTMTEPYVLELYGDRRFERTIGEKPR
EELLQDRRFYAAVNYVKTLVDWVVIDLPAETMKIAEDLSIYSDYVLFTSHNSELALSN
LLFVELGSLYKTNELAFTNYLAKGSIVLTRYEKESLLDRRELTGALAEKLIRRQGDPW
NLKVVGAIPYTPGYAGQYSTGRMLSLGELREPFLQIIENM"
misc_feature 419058..419777
/locus_tag="PM3016_352"
/note="CobQ/CobB/MinD/ParA nucleotide binding domain;
Region: CbiA; pfam01656"
/db_xref="CDD:201907"
gene 419928..420806
/locus_tag="PM3016_353"
/db_xref="GeneID:11882347"
CDS 419928..420806
/locus_tag="PM3016_353"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310478.1"
/db_xref="GI:379718347"
/db_xref="GeneID:11882347"
/translation="MFKRGSSDTRVLVNKLKSIGVYLLALGVFLASLVMILNNTSKYK
RDVAVAEFREDVGSGTLIKKDMIQKRTLAERDYDSKTMVPYDQAASLIEGKYTGIYIP
KGVTLQKTWFTDKKKERLKYLKDMKENQEFVTIPYDSRYSGGRVLLPGDYVKLYAVYQ
GTDPATGQLNKLADVDVIFKKIKVTDLLNAEEESVLGYLEDAQMLSREQQEALMKRKE
FQDSLTPKFMGLVLTNEEAEALQKFLGNGKIQIKADILTRDENVENSNKIGSLLSQLQ
GGTAAPAPQADGAAQP"
gene 420822..421655
/locus_tag="PM3016_354"
/db_xref="GeneID:11882348"
CDS 420822..421655
/locus_tag="PM3016_354"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310479.1"
/db_xref="GI:379718348"
/db_xref="GeneID:11882348"
/translation="MDFLNRTKKIIEYNVEKIQSESYFCSNFGFVSLLNGAGTSTLAA
NTASLLSKQEKKVLLLDANFHQPNLFYFFDGLEVPENQSLSMYFANKIEEKELNIRVP
GHENLWLISTSPKDRVDKILQANEDNLGRLMEYVSETFDFVIADIPFLPMSEWFIEIL
ERMDKSIIVWDEQNDCGYKTVQMLEFLDSHSDCVNMVKNVVINKRTKRAYELDKIKKE
FNCNYVCSLPHIDDMDELKAAGELIIDSGKMSRAYGKEFYHMVDYLLSNHKTGSSGGE
G"
misc_feature 420903..421328
/locus_tag="PM3016_354"
/note="AAA domain; Region: AAA_31; pfam13614"
/db_xref="CDD:205792"
misc_feature 420903..>421016
/locus_tag="PM3016_354"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature <421029..>421145
/locus_tag="PM3016_354"
/note="Protein of unknown function (DUF1162); Region:
DUF1162; pfam06650"
/db_xref="CDD:203492"
gene 421655..423091
/locus_tag="PM3016_355"
/db_xref="GeneID:11882349"
CDS 421655..423091
/locus_tag="PM3016_355"
/codon_start=1
/transl_table=11
/product="type II secretion system protein E"
/protein_id="YP_005310480.1"
/db_xref="GI:379718349"
/db_xref="GeneID:11882349"
/translation="MLTPEKLKQRRARYGRASLYTKEEISFTKIVEQCSRYLHRLNRE
MNLSALKAKQRTRDNIDRFVNDLEVKVEGYENPDQLRKALKDEMIHYGIISELMEDPA
VNEIRINGYDRIFYEAGGMTKRYDKAFSSPEDARRVIERLLGEVRITENEPFKNARTL
EEGWRINAIHGEISHLGEYGVVIRKFRENTFRDEDFLENGVMTQDMLNFLQFMPQIYV
NWWTVGPTGSGKTALNEAILKKMNPSDRTIIVENPTEIRFEQRDERTGQTVNDFLQLV
AKNPDPENEKNPNWPTMNNLLTNALRQTPKYLGAGEIRTPEEFKTMLVAAQTGHQTFA
TFHADAADKALQRYLTTYLMVSPNEPPELVMSNLCDTIDLIVCVKLFPKTGKRRVTSI
AEVIGSEGMKPLINIIYEYEIEHVDDDGVVKSSFVRRNAISDKLVAKFKDAHIPFSRY
AKWTQPPAGGREVEATYYEGTQKEAVLL"
misc_feature 421808..422905
/locus_tag="PM3016_355"
/note="Flp pilus assembly protein, ATPase CpaF
[Intracellular trafficking and secretion]; Region: CpaF;
COG4962"
/db_xref="CDD:34569"
misc_feature 422234..422827
/locus_tag="PM3016_355"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature order(422324..422329,422339..422347)
/locus_tag="PM3016_355"
/note="Walker A motif; other site"
/db_xref="CDD:29986"
misc_feature order(422327..422329,422339..422347,422399..422401,
422405..422410,422585..422590)
/locus_tag="PM3016_355"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29986"
misc_feature 422573..422587
/locus_tag="PM3016_355"
/note="Walker B motif; other site"
/db_xref="CDD:29986"
gene 423088..424089
/locus_tag="PM3016_356"
/db_xref="GeneID:11882350"
CDS 423088..424089
/locus_tag="PM3016_356"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310481.1"
/db_xref="GI:379718350"
/db_xref="GeneID:11882350"
/translation="MIRELKLFLFSRDIFPVLLALLSLFLFTVKYWKIDLQNKSKEMG
SRTFTKLLAWGVENNRKRVQKERIGLKQRKVVKLYQRILGSVIEAYEIKITVENFTVF
FIVLWFVLVAVLYWTIENLLMAVLIATPAVAAVFAAIVTSSKSRIKARDTAVMDFLDI
ICPLIGRGVTATFERNIAAADPRIRGHIQTYINQRKFSTIAVERAMDELAEKLGPRFH
EFARKAKNYEYNAREGDAEAFMDVVEMNKLIRMFEVRSEALFERKNQDMLARILIIIL
LALYANYVGVSAEFMQGSGIAHIINSVVVCFCLVIFAGNQLVQITARVNDDEFTEEA"
gene 424163..425059
/locus_tag="PM3016_357"
/db_xref="GeneID:11882351"
CDS 424163..425059
/locus_tag="PM3016_357"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310482.1"
/db_xref="GI:379718351"
/db_xref="GeneID:11882351"
/translation="MASILFFAVIGSLALGWLGFALGKAIFRPVAKKKAVRFRVKQEK
KKDWDPDSVFQLLKLDLKEVFLSETAEQELNAKLRRLGLAKSARDVRKEQIVLSGVSL
LVGLFSYWAFAPVLGLLGLAIAAAGWIYPVETINREIRQMNEIVYKKFPSFYRRNYYS
YKKNINTSLSRVVESHMRVCHPAFQRELKVFLEDIESVGEFEAIQRWKNRLPLPYIIR
YAEIIESRLRGEDNTPVMENFKLELDKMREVQVDKDLLKLESRINGVLGLMYVPFFLL
LIIYFLAQMQGSGLVQFFKQLQ"
gene 425095..425244
/locus_tag="PM3016_358"
/db_xref="GeneID:11882352"
CDS 425095..425244
/locus_tag="PM3016_358"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310483.1"
/db_xref="GI:379718352"
/db_xref="GeneID:11882352"
/translation="MVKFAQMAAAIFIIGVVIAVLNDNMEGWINEVWTHVWGLFKGWM
GPGTA"
gene 425278..425829
/locus_tag="PM3016_359"
/db_xref="GeneID:11882353"
CDS 425278..425829
/locus_tag="PM3016_359"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310484.1"
/db_xref="GI:379718353"
/db_xref="GeneID:11882353"
/translation="MHHFFWLIVRFSMLILGVLCLFSFLTFFPYLMDVKAMANQISLQ
VMNDGYLDRKDVDKRLAEFRTERGFLSSATLVPGEADAGYLLPGLGSPDEVSIKAEYS
PGEGQAERELLPIWKEEKAARVTAAESSGTAPVGVLDRDVPIRVEIRTNYKVETIAFG
KRLVMYLPFSVSSAAITIADYKW"
gene 425864..426442
/locus_tag="PM3016_360"
/db_xref="GeneID:11882354"
CDS 425864..426442
/locus_tag="PM3016_360"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310485.1"
/db_xref="GI:379718354"
/db_xref="GeneID:11882354"
/translation="MMLLLFALLVVTDLMRYFLLHSEVEAESSKGLKYMLSALGTGEG
SNVMGTLEEVKQRTRDAFDRYIATQYPDSAYVKESGEDGTYYFYNITPRPDRLQNTKL
RILSGRITVQLKLPAEVEKSDSSADLVPTYEVGLGYRRFLMSSLNLHPGVDTVWEERS
MMRFPVSHVELAEFRIGVSSGTIAVPSPIPTP"
gene 426462..426827
/locus_tag="PM3016_361"
/db_xref="GeneID:11882355"
CDS 426462..426827
/locus_tag="PM3016_361"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310486.1"
/db_xref="GI:379718355"
/db_xref="GeneID:11882355"
/translation="MNKKAIGMAALLTAASLLVVSSVYGRTIITYVSEFFEPTPATAD
YGTVKKLTGDFRQQEISDSQTEAVWTQGSVTIKRPDGTTVKGEIPVGGFEVETKKWPQ
IPGVPDLEYKTFGSDTAAP"
gene 426860..427903
/locus_tag="PM3016_362"
/db_xref="GeneID:11882356"
CDS 426860..427903
/locus_tag="PM3016_362"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_005310487.1"
/db_xref="GI:379718356"
/db_xref="GeneID:11882356"
/translation="MKRVLKTAWAASLLFSAFGGFGGGSTSVIAAGFNDIENHWAKET
ITWGQQEGLISGYPDGTFKPNAQVTEAEFVKMMVASFKTEVSEVQSPKHWADAYYYFA
ESKNYPLKGYQELADRDKPITRERVAEFVVGTVGKNYSGDQAIQYLIGFKLATGKVEG
EMTIASFKGQDTLTRGEAAQFIRNLKINNVNYFRTRPYEPSPASGLPLMPSPTQVGLN
QIMYVLNTHVMTKFPGYSVRSANHDGHFDTSTVTVIDGKNRNILVTQIEYDPKTKSIV
LFHLLESEKEGNVEMTAASVKALGYPVPDNFADTLHTVLKEHKDQRVRAGQWTLYLKP
DENLMTRMQIIVE"
misc_feature 426956..427081
/locus_tag="PM3016_362"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 427936..428979
/locus_tag="PM3016_363"
/db_xref="GeneID:11882357"
CDS 427936..428979
/locus_tag="PM3016_363"
/codon_start=1
/transl_table=11
/product="S-layer protein"
/protein_id="YP_005310488.1"
/db_xref="GI:379718357"
/db_xref="GeneID:11882357"
/translation="MKGRLKTALAASLLFSAFGGFGGGGTAVLAAGFNDIENHWAKET
ITWGQQEGLISGYPDGTFKPNAQVTEAEFVKMMVASFKTEVSEVQSPKHWADAYYYFA
ESKNYPLKGYQELAQRDKPITRERVAEFVVGTVGKNYSGDQAIQYLIGYKLASGKVEG
DMSIASFKGQDTLTRGEAAQFIRNLKLSNVNYFRTRPFEPSPVSELPQLPGPTQQGLN
QIMYTLNDKVITKFPAYGVRPVNHDGHFDTSFVVVYYGENKHAMVLNIEYDPKTKSII
RFNFIDGEKEGSVEMFAAAVQALGFPVPNDFSSTLRAVMSENKAQRVNAGQRTLLLKP
NELVVTRMEIFVE"
misc_feature 428035..428157
/locus_tag="PM3016_363"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 428992..432285
/locus_tag="PM3016_364"
/db_xref="GeneID:11882358"
CDS 428992..432285
/locus_tag="PM3016_364"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310489.1"
/db_xref="GI:379718358"
/db_xref="GeneID:11882358"
/translation="MKRWTAWFCIVVLLLPLWPAGNRVEAESNSSLIARFQSFMKDKD
INGGYTAEDFRRDNGRLKEEIDRYFDSLDIPRFINGRQGRVEINYPLAARKKIIVYGT
PFDDGNDPPKGDQHRYWGQTESLTVFPNFDYPPDAESHTPLKERDWIEEPWNKNIKRA
QKTDYMEGELWDTGSQSDQQDSHLEASPKEWLKGAVNHYNNDSNLLEDLGWSVDKLYK
HAVILSRPTEYSYGQIVLFHHRNGVNWYDDFMIPPLKSRYNISLRGSSLTPNDKGPEG
SPLRLHTEVELSAYNSEPVRIKVEFRRLNGDIINSKEIELSREHPMEKVSIDWKRPGG
GEKVTVEAYAVNSSGQRDEKFPEAYEEDNVDYIALSAPVDVPDGPYEGFYHVSDLNKL
KSQEDVRSYGGNPVFIQELSTGGKTVSGISDLPSEPVWKDNKGNDISPRSFFVNDGSR
TYLKLSSLASLSGAKLTSKLTAPAFRTDHESEITRTEQGACVTETECETIYHVTETFR
LQSMGSYYSQNLAEFEVEQSRAPQISKFAVDPQGNLRISASAFGFPAGGLKADLILDY
EANKEKLPEGLRSLDNPANPQGGYWRKMVLPAFASEKQPFIHELTSSDGAVITKGTEA
KLKGSSSDELVISQEKLQQMFAYSEQLDLFRQSEAYHKAQGTEKHRLLKYMEGIGKDR
PALSPGPHTLTLYVTDTFGRFDYITIRYSPVALHDGKAKPEFAYFQGKGTPTEFSHET
ANGRSGMNAYRDYAVHFDLTVPASIRKSGTTLERPGFLAAWATDFPAMRTGSQYKVGM
SKDTAGALHAADTGDFNTFDADGSVKNVSDLVPANEAKVYSKFDPRDFYNTKLIQEEK
NTSAQFKAFPRVIRSGQGIFTESSLEVRAVLEGPSEADNIRRMAELVSSVIEGGSGLQ
LSGAKDEELITSVTGPGKYGDLTNNLNETSQKLVLQSGTVQSIIEASKPVTTSQTIIE
DSRNRLQVQRTEFIFAVPVWLEPAKGAFGGSNLNTKSYDWTGRGYRGFMIHPNTKDGF
YTMRVEGSADLSKLDPSFAGRKLSLYSRLEPLVVLGSVFQDMWVDTSAPAPAQPGTVD
SGSDWQWTD"
gene complement(432472..436050)
/locus_tag="PM3016_365"
/db_xref="GeneID:11882359"
CDS complement(432472..436050)
/locus_tag="PM3016_365"
/codon_start=1
/transl_table=11
/product="alpha-amylase"
/protein_id="YP_005310490.1"
/db_xref="GI:379718359"
/db_xref="GeneID:11882359"
/translation="MKSRSRWLRRFSAAALALALALPSASASAEIAASHVYHNHMPNF
WPYYDVSKYDSTPVGSPVRYIYDGQVIDLKKNPPANYTYYLPSGAPMPHDDLVSYYTH
HAKTGAYLEWPWDVAATLRANHPSAQMQVTMSAAVINNVNSFMYTNNVPGYSNTNWGA
PWKNAYNTLKTPSGNRTMDMVHFTGHHTMGPLVGNDYMLKDLIYHNATLAQPYFLGSD
FKSSKGFFPTELGFSERIIPVLEKLGIQWSVIGNNHFSRTLRDYPLLNDPGKDTMVSP
PNRADLQNESNVGSWVSQQMFNEQQVTHNKFPFASTPHWVKYVNPTTGKESKIVGVPV
AQAESWEEGYQGQVTAKALKPFEGLVPQKQFFVIAHDGDNSSGRAGDKGTYLNAGAVT
YSDTGVKGMGIDEYLATNKPAASDVVHVQDGSWIDTRDSSSDPQWHHWKLPFGIWKGQ
FADFNRVMGTNYTPKKNLAGVEEGMTVSFEHGYHYLERNFALLQAAENYAKTAEQIWL
DEHPNHWQPATALDKEVTYAGNQLNPWMMSYPVKGDASKDYAGGANPAELSWYFLMPA
IDSGFGYYDENQDDSVKPTVSFNQSLHFSKPYVTPKADKDRTGPSVWWPQRWPYNPGS
ANVDKSEGWTLHHFDNTFGIYTYAYDLNGITDIKVKIRKHTSKQADAADNTFRVYDPA
ALKAQGVAGIDPAKVGEWKEYPMLRRDLKPDMNGVDWQAGSKAVLQKVPAQEIGDLYY
SYIKDLRDELVDYYIEAKDSKGNITRSDIQQVYVGAGTYKNVGGKIIEDPSGDIKGTY
PFLTDKPPVLDTTPPSVPSDIKAASASKTSIELTWTASTDDVGVTGYEIYRNGTKVGT
SAANRYVDTGLAALTAYTYTVKAFDAKGNTSAASAAATLSTTDQGNSATVYYKPGYTT
PYMHYRPAGGTWTTSPGTVMPASEIAGYHKLTVDLGAAASLEAVFNNGSGTWDNNGGK
NYIFPAGTSTYSGGVITSGPPPADSQAPSVPAGLQSSAKTDTSVTLGWTASTDNVKVT
GYDVYRGGVKVGTTAGTTYTDSGLTANTVYSYTVKAFDAAGNTSTASAALSVTTNPAA
GASTLTFKVTVPSNTPAGDSLYVAGSFNSWNAADPASKLVKQADGTYTVTLPIAEGTA
VQYKITRGSWETVEVSSTGTDIANRTYTKGAGAQTVSLTVVRWKGL"
misc_feature complement(434704..435792)
/locus_tag="PM3016_365"
/note="putative catalytic domain of glycoside hydrolase
family 119 (GH119); Region: GH119_BcIgtZ-like; cd11663"
/db_xref="CDD:212128"
misc_feature complement(order(434710..434712,434776..434778,
434938..434940,435364..435366,435772..435774,
435778..435780))
/locus_tag="PM3016_365"
/note="putative active site [active]"
/db_xref="CDD:212128"
misc_feature complement(order(434938..434940,435364..435366))
/locus_tag="PM3016_365"
/note="catalytic site [active]"
/db_xref="CDD:212128"
misc_feature complement(433396..433611)
/locus_tag="PM3016_365"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cl00065"
/db_xref="CDD:206813"
misc_feature complement(433114..433350)
/locus_tag="PM3016_365"
/note="Carbohydrate binding domain (family 25); Region:
CBM_25; pfam03423"
/db_xref="CDD:190631"
misc_feature complement(432835..433050)
/locus_tag="PM3016_365"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cl00065"
/db_xref="CDD:206813"
misc_feature complement(432529..432780)
/locus_tag="PM3016_365"
/note="The family 20 carbohydrate-binding module (CBM20),
also known as the starch-binding domain, is found in a
large number of starch degrading enzymes including
alpha-amylase, beta-amylase, glucoamylase, and CGTase
(cyclodextrin glucanotransferase). CBM20 is...; Region:
CBM20; cl15347"
/db_xref="CDD:211509"
gene 436627..436872
/locus_tag="PM3016_366"
/db_xref="GeneID:11882360"
CDS 436627..436872
/locus_tag="PM3016_366"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310491.1"
/db_xref="GI:379718360"
/db_xref="GeneID:11882360"
/translation="MAEWSPDWPALLLLLGMTSLVWGPWMLAKGVFIAEGAGQRKDVV
PLPPEPQEDLRPSGTRRFAVRLLRPPRAGTDDRDEED"
gene 436978..437676
/locus_tag="PM3016_367"
/db_xref="GeneID:11882361"
CDS 436978..437676
/locus_tag="PM3016_367"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310492.1"
/db_xref="GI:379718361"
/db_xref="GeneID:11882361"
/translation="MYTLVQPLIDFLAYLLAMLYEWTQDWGLALLLLTFGVRLLLVRF
NLNAGRQQVRTAAAQPELAKLRDTHGSDLAELVRHTSEVNRKYGIRPLAPFAAALLQA
PLLMAMYGLFLTHGSTMTTVLLPWMAGLGTADPLHLLPLAAGLLSAAAGLIPLADVPS
LGSAFTATGARLVLGSLLLLVPLAVTWTAPAAVALYWTAGSAFALLERLFYRTAPGRR
LLHRGLPAAVRPLT"
misc_feature 437110..437613
/locus_tag="PM3016_367"
/note="60Kd inner membrane protein; Region: 60KD_IMP;
cl00489"
/db_xref="CDD:212227"
gene complement(437768..438517)
/locus_tag="PM3016_368"
/db_xref="GeneID:11882362"
CDS complement(437768..438517)
/locus_tag="PM3016_368"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310493.1"
/db_xref="GI:379718362"
/db_xref="GeneID:11882362"
/translation="MKRTASFFLLLTVTVLCVWGALASGAGANRDLERLLPLSLDVID
GPVRVVVKHISPYKPHAGEAAFLETGRRLSERLGLPPAELRSGGDHILYKASGPDSGG
IRRTLLWVMFPDGSTELIVSAETPESGDTGTGGEAASRMEEAQTKLSRVLEGMGVTPN
WNVIVQGKLKADYASPDKLNGWLQAELRAEAVESYDDGRSVSVSYASPLLEASVQSGG
RMLNLQAAVHRSSETGESRLTLGTPVITTEY"
misc_feature complement(437771..>437992)
/locus_tag="PM3016_368"
/note="Protein of unknown function (DUF1779); Region:
DUF1779; pfam08680"
/db_xref="CDD:204024"
gene 438723..439226
/locus_tag="PM3016_369"
/db_xref="GeneID:11882363"
CDS 438723..439226
/locus_tag="PM3016_369"
/codon_start=1
/transl_table=11
/product="tripartite AtP-independent periplasmic
transporter subunit DctQ"
/protein_id="YP_005310494.1"
/db_xref="GI:379718363"
/db_xref="GeneID:11882363"
/translation="MQQLKRIALWFDSLLENLAQIALLSMILIVTVQVLTRKLFNYVL
PWSEEVTLLLLVWFAFIGIAIGFRERLHLAIDSFTAKLPPLANKVLDKVIYAVTLAFG
FYLVVSGTEFTQLMHESRLAATGLPNSIIYVIMPITGVLVCIYSFLQLIGMDTVRHKG
MDEGGGH"
misc_feature 438732..439175
/locus_tag="PM3016_369"
/note="TRAP-type C4-dicarboxylate transport system, small
permease component [Carbohydrate transport and
metabolism]; Region: DctM; COG3090"
/db_xref="CDD:32904"
gene 439228..440532
/locus_tag="PM3016_370"
/db_xref="GeneID:11882364"
CDS 439228..440532
/locus_tag="PM3016_370"
/codon_start=1
/transl_table=11
/product="TRAP dicarboxylate transporter subunit DctM"
/protein_id="YP_005310495.1"
/db_xref="GI:379718364"
/db_xref="GeneID:11882364"
/translation="MEETTIAVLVLSISFVVMLLLRFPVSLTLAVSTLLTVMYLEIPL
AVVGQRMIQGMSSYSLLTIPFFILAGHIMSEGNLALRIVNLAQLFVGRVRGGLAMVNS
VACMFFGNISGSAVADVSSIGSVMIPMMKKKGYDTDYSVGVTVSSAIQGVVVPPSHNL
VLYSLAAGGGISITSLFLAGIVPGIILCLSLMLTSYVFAVKRGYAKGDPIDRKDVPKI
LLDGFMSILTAVIILGGIFSGWFTATESGALACLYAFILTFVIYKDIPYSRMWLILKK
TFRTVSMVLFLIAASDAFSWLLAFLKIPAMVTDAMISISDSPFVILLIINLLLLLLGA
PMDMAPLILIMTPILLPVVTHLGMDPVHFGIIMMLNLGIGLLTPPVGTVLFVGCAIGK
ISISEGTKAMMPFFYVLCVVLLVLTYLPGLVMWLPNLVQGTG"
misc_feature 439264..440493
/locus_tag="PM3016_370"
/note="DctM-like transporters; Region: DctM; pfam06808"
/db_xref="CDD:148424"
misc_feature 439378..440520
/locus_tag="PM3016_370"
/note="TRAP-type C4-dicarboxylate transport system, large
permease component [Carbohydrate transport and
metabolism]; Region: DctQ; COG1593"
/db_xref="CDD:31781"
gene 440606..441634
/locus_tag="PM3016_371"
/db_xref="GeneID:11882365"
CDS 440606..441634
/locus_tag="PM3016_371"
/codon_start=1
/transl_table=11
/product="TRAP dicarboxylate transporter subunit DctP"
/protein_id="YP_005310496.1"
/db_xref="GI:379718365"
/db_xref="GeneID:11882365"
/translation="MKTLKKTVTVLSALAIAGGLLAGCGAKETAGGTEGEKKAEGKKY
TFRLADTHPADYPTVIGDKKFAELVNERTNGRIKIDVFPGAQLGEEKAVLEQVQLGAI
EFTRVSSGPLGEFSKGFGVFSLPYVFDSDQHLWKFLESEAGNKMLDSLEGAKMKGLAY
YSSGARSFYSRKPIASLADLKGQKIRVIQNKINIDLVAALGGSATPMPYGEVFSSLQT
GVIDAAENNFPSYQSSNHFEVAKNMILDGHQRVPEVLLISQTAWNKLGEEDRKILKQA
ALDSVKTQREAWDKYEKEAEAKVRAAGATITEVKDLKPWQDAVKPVIEKYRADYKEAL
DAIDAARK"
misc_feature 440735..441631
/locus_tag="PM3016_371"
/note="TRAP-type C4-dicarboxylate transport system,
periplasmic component [Carbohydrate transport and
metabolism]; Region: DctP; COG1638"
/db_xref="CDD:31825"
misc_feature 440747..441592
/locus_tag="PM3016_371"
/note="Bacterial extracellular solute-binding protein,
family 7; Region: SBP_bac_7; pfam03480"
/db_xref="CDD:202660"
gene 441999..443933
/locus_tag="PM3016_372"
/db_xref="GeneID:11882366"
CDS 441999..443933
/locus_tag="PM3016_372"
/codon_start=1
/transl_table=11
/product="integral membrane sensor signal transduction
histidine kinase"
/protein_id="YP_005310497.1"
/db_xref="GI:379718366"
/db_xref="GeneID:11882366"
/translation="MSMRIGQWMDRIQRYGLLRDKPLTLRLFVFSALLVAVPLVLVGL
ISYQRSADVLESEGRESSLQIIEQVKSHIEYYVRDFEITTLGIVNHPDVTRLLRMRTA
EEIQQSGIRPAVVQMLKNASYSRSDISNITLVLDGRQTFDTAGVRSPYPADELRKEYW
YADVPLQGTPKLISRVIRWPDGRQEQVFSIVRRLMSPQTLEPAGMLIMDVNFKRIQEI
SEMVSIGRTGFLYMVDAQNHYVYHPDLSLVGTPAEPGHTGQMTEESGALITGDKPSLF
LTYSLSPYLGWRLVTVLPYKELTDGTDYIGRTILWTLIIALTAAYLLGIGFAASLVGP
IRRLQAYMRRVEVGDFSVKLEVRSKDEIGLLTHGFNKMVERLESLLEEIYFSRLKETE
ASLRQKESELKVLQSQLNPHFLYNSLETIRGMALDQDMDDIASMSGALAKLLRYNLKN
DRPVVTLREELLFCRMYLRVQQYRFEDRLDSEFDVPDWALELPVVKFALQPIVENSII
HGMEPGAAPMRIRISARRDGDASFLVAVEDTGVGMPVEVLSRIRLDLEQKDVLAGGDH
IGVANVHRRIVYVYGEAYGGRIDSREGGGTTVTLRFPAEARRQADTDEGLSPLRKAGL
PLSSPEQKGGSDSVQRAVGG"
misc_feature <442608..442748
/locus_tag="PM3016_372"
/note="Cache domain; Region: Cache_1; pfam02743"
/db_xref="CDD:145738"
misc_feature 442989..443129
/locus_tag="PM3016_372"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(442989..442994,443001..443006,443010..443015,
443022..443027,443031..443033,443079..443084,
443088..443093,443100..443105,443109..443114,
443121..443126)
/locus_tag="PM3016_372"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 443154..443828
/locus_tag="PM3016_372"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: COG3920"
/db_xref="CDD:33706"
misc_feature 443199..443447
/locus_tag="PM3016_372"
/note="Histidine kinase; Region: His_kinase; pfam06580"
/db_xref="CDD:203479"
misc_feature 443490..443804
/locus_tag="PM3016_372"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(443499..443501,443511..443513,443520..443522,
443604..443606,443610..443612,443616..443618,
443622..443627,443694..443705,443766..443768,
443781..443786,443790..443792)
/locus_tag="PM3016_372"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 443511..443513
/locus_tag="PM3016_372"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(443616..443618,443622..443624,443694..443696,
443700..443702)
/locus_tag="PM3016_372"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 443908..444648
/locus_tag="PM3016_373"
/db_xref="GeneID:11882367"
CDS 443908..444648
/locus_tag="PM3016_373"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_005310498.1"
/db_xref="GI:379718367"
/db_xref="GeneID:11882367"
/translation="MYSVLLVDDEKWVRTSLRKVIERTGLPFEVAREASHGLEALDIL
KEAPVDMVLTDVRMPVMNGMSFVQQLRQTAREQSVIVVSGYDDFAYVQGALRLGVTDY
LLKPVEVEEMRACLEGWLQARAGGQAAGAPKASCDPADRSPVEQVLGYIREHLGGELT
LTEAAARVHLNPSYLSQLFKQQLGRGFVEHIVEMRMEEAKRLLAATSLRVSEVAQRVG
YTDVAYFSNTFKRSAGCTPTEYRRCPPA"
misc_feature 443917..444249
/locus_tag="PM3016_373"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 443920..444267
/locus_tag="PM3016_373"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(443929..443934,444070..444072,444094..444096,
444154..444156,444211..444213,444220..444225)
/locus_tag="PM3016_373"
/note="active site"
/db_xref="CDD:29071"
misc_feature 444070..444072
/locus_tag="PM3016_373"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(444079..444084,444088..444096)
/locus_tag="PM3016_373"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 444220..444228
/locus_tag="PM3016_373"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 444358..444480
/locus_tag="PM3016_373"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature 444379..444630
/locus_tag="PM3016_373"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature 444520..444633
/locus_tag="PM3016_373"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 444913..445329
/locus_tag="PM3016_374"
/db_xref="GeneID:11882368"
CDS 444913..445329
/locus_tag="PM3016_374"
/codon_start=1
/transl_table=11
/product="putative sensor/response regulator hybrid"
/protein_id="YP_005310499.1"
/db_xref="GI:379718368"
/db_xref="GeneID:11882368"
/translation="MHAGYTARRAKAPAACEVLIVEDDNISRRVLHTILAQLGFGHID
MEDNGEAAVSAAAAKRYDLIFMDLRLPVLDGLSAARRIMADCEGQRPVMIAVTTNTLP
EIKQQCMAAGMADYIIKPYYKATLVEVLDHYFPVVL"
misc_feature 444964..445305
/locus_tag="PM3016_374"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 444967..445314
/locus_tag="PM3016_374"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(444976..444981,445111..445113,445135..445137,
445201..445203,445258..445260,445267..445272)
/locus_tag="PM3016_374"
/note="active site"
/db_xref="CDD:29071"
misc_feature 445111..445113
/locus_tag="PM3016_374"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(445120..445125,445129..445137)
/locus_tag="PM3016_374"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 445267..445275
/locus_tag="PM3016_374"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
gene 445394..446461
/locus_tag="PM3016_375"
/db_xref="GeneID:11882369"
CDS 445394..446461
/locus_tag="PM3016_375"
/codon_start=1
/transl_table=11
/product="cobalamin B12-binding domain-containing protein"
/protein_id="YP_005310500.1"
/db_xref="GI:379718369"
/db_xref="GeneID:11882369"
/translation="MPAHTEAGVLLLDMAEQLADQVTERQYSLQPDLIQRFGPAGRER
TKQDTVFSLKYLAESLMMDSPSLFVHYITWLKALLEGYKVGVKEIEVNLACLREEVCL
SIGGEHQEHVTRFLDIGLHQLALPADVPPFIAADAPYGAEAAEYLRILLEGRRQEASR
LIMELVEAQTPLADIYLHIFQPVQYEIGRLWQTGGINVAQEHYCTAATQLIMSQLYPY
LFGSERKDRRLVATCVGDEIHEVGLRMVADLFEAEGWDTYYLGANVPARSIIQTVISQ
QAHMVAISATMTYHVHLVKKLIEQIRASEGCRGVKIIVGGLPFNIDPQLWIQVGADGC
SRNAGEAVRMAAGLLREIPAS"
misc_feature 445832..446044
/locus_tag="PM3016_375"
/note="B12 binding domain; Region: B12-binding_2;
pfam02607"
/db_xref="CDD:202306"
misc_feature 446072..446428
/locus_tag="PM3016_375"
/note="B12 binding domain; Region: B12-binding; pfam02310"
/db_xref="CDD:202201"
misc_feature order(446237..446245,446249..446257,446342..446344,
446396..446398,446405..446407,446414..446416)
/locus_tag="PM3016_375"
/note="B12 binding site [chemical binding]; other site"
/db_xref="CDD:30204"
gene 446478..448193
/locus_tag="PM3016_376"
/db_xref="GeneID:11882370"
CDS 446478..448193
/locus_tag="PM3016_376"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310501.1"
/db_xref="GI:379718370"
/db_xref="GeneID:11882370"
/translation="MTTIGEPEEAQRLRETIARLSDELIRSKQREDAALTEFSVMNNE
LITLQRLLAKTNAQLKTAKEEAERANAAKSDLLAMISHEIRTPLSGIMGMSELLGLSG
KAAEARQELALIRSSAALLLTIAHDLLDLSRMEAGKLTLVSRPFRLREVLLHVVELLT
PSAVSNGTALLQQVEERIAPVLVGDADRIRQVLINLAGNAIKFTPGGTVTIRVDLLGG
GAGEQRIAMEIRDTGRGIPQEKLSELFQPYYQAHDASSADMPKGTGLGLSITKRIVEL
MGGTIAVQSVLGEGSTFRVELPLPVGENSGRADEPDSGPADLPQRAAVKREIAVLLAE
DDAISRQVILMQLQKLGLSRITTAGSGTEAVEACARGTFDIILMDHHMPGMNGSEAVR
AIRLQEAAAGRPRIPILSLSGSTLGRAGESRVLGSELDDALMKPFTLKALREALEKWV
PAFRPEPQPELLEQEVLAELLELDPSRALLRQLVADYLADTPGRLQRLKEAADRGSHE
EIARLAHSLKSGSVTLGLRPLSDLLHTLEEEAREGQPSGKLACLVSGVLAEYERADTV
LRQLV"
misc_feature <446697..447389
/locus_tag="PM3016_376"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature 446697..>446807
/locus_tag="PM3016_376"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(446703..446705,446715..446717,446727..446729,
446736..446738,446748..446750,446757..446759)
/locus_tag="PM3016_376"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 446721..446723
/locus_tag="PM3016_376"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 447042..447368
/locus_tag="PM3016_376"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(447060..447062,447072..447074,447081..447083,
447162..447164,447168..447170,447174..447176,
447180..447185,447267..447278,447324..447326,
447330..447332,447345..447350,447354..447356)
/locus_tag="PM3016_376"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 447072..447074
/locus_tag="PM3016_376"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(447174..447176,447180..447182,447267..447269,
447273..447275)
/locus_tag="PM3016_376"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 447465..447818
/locus_tag="PM3016_376"
/note="Response regulator receiver domain; Region:
Response_reg; pfam00072"
/db_xref="CDD:200976"
misc_feature 447468..447827
/locus_tag="PM3016_376"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(447477..447482,447612..447614,447636..447638,
447711..447713,447771..447773,447780..447785)
/locus_tag="PM3016_376"
/note="active site"
/db_xref="CDD:29071"
misc_feature 447612..447614
/locus_tag="PM3016_376"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(447621..447626,447630..447638)
/locus_tag="PM3016_376"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 447780..447788
/locus_tag="PM3016_376"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 447915..448181
/locus_tag="PM3016_376"
/note="Histidine Phosphotransfer domain, involved in
signalling through a two part component systems in which
an autophosphorylating histidine protein kinase serves as
a phosphoryl donor to a response regulator protein; the
response regulator protein is...; Region: HPT; cd00088"
/db_xref="CDD:28972"
misc_feature order(448020..448022,448029..448034,448077..448079,
448086..448088)
/locus_tag="PM3016_376"
/note="putative binding surface; other site"
/db_xref="CDD:28972"
misc_feature 448020..448022
/locus_tag="PM3016_376"
/note="active site"
/db_xref="CDD:28972"
gene complement(448249..448530)
/locus_tag="PM3016_377"
/db_xref="GeneID:11882371"
CDS complement(448249..448530)
/locus_tag="PM3016_377"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310502.1"
/db_xref="GI:379718371"
/db_xref="GeneID:11882371"
/translation="MTLAGKALGLLAIFIIFRTLLAWTIRFLDKRCRLRPSTLHFILA
AAGTVPLVHLVQSAVQGRAAMSLTVMPALLILYTVIKGLWVRKQEESAL"
gene complement(448795..449469)
/locus_tag="PM3016_378"
/db_xref="GeneID:11882372"
CDS complement(448795..449469)
/locus_tag="PM3016_378"
/codon_start=1
/transl_table=11
/product="PelA protein"
/protein_id="YP_005310503.1"
/db_xref="GI:379718372"
/db_xref="GeneID:11882372"
/translation="MKMKKVASMMLSVGLVSSVFAALPAQAATITVNSTIVVAAGQTF
DGAGNTYVANASTLGDGSQAEGQKPVFRVEAGGTLKNVNLGAPAADGVHCYGSCNITN
VNWQDVGEDALTLKSSGTVNITGGSAYKAYDKVFQANAAGTFNIKNFRANDIGKLVRQ
NGGTTFKVVMNVDSSDISNVKDSILRTDSPVSTGSITNTRYSSVPTLFKGFASGNTYQ
SGNTKY"
misc_feature complement(448801..449403)
/locus_tag="PM3016_378"
/note="Pectate lyase; Region: Pectate_lyase; pfam03211"
/db_xref="CDD:202574"
gene 450241..450459
/locus_tag="PM3016_379"
/db_xref="GeneID:11882373"
CDS 450241..450459
/locus_tag="PM3016_379"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310504.1"
/db_xref="GI:379718373"
/db_xref="GeneID:11882373"
/translation="METPKNTERMRQRVNRDHPEQYPTDKPSLFDLYESEQTVDAIPV
EDLTLEQQEEKNGEETKHRSSSERKYHP"
gene 450892..451422
/locus_tag="PM3016_380"
/db_xref="GeneID:11882374"
CDS 450892..451422
/locus_tag="PM3016_380"
/codon_start=1
/transl_table=11
/product="DoxX family protein"
/protein_id="YP_005310505.1"
/db_xref="GI:379718374"
/db_xref="GeneID:11882374"
/translation="MLTRFLRDNVYAAGLLMVLRLYLGYQWFTAGLHKLTGGFDAAGF
LKGAIAKPVLDKATNELVYPTFTAFLQHFALPNVKLINFLIPVGETLVGLGLILGALT
TAAAFFGLMMNFMFLFAGTVSTNPWLILLGVIVLMAGTNAGRFGVDHYLMPFLRKLRR
QGGHEAGRGNGTAAKV"
gene complement(451525..452211)
/locus_tag="PM3016_381"
/db_xref="GeneID:11882375"
CDS complement(451525..452211)
/locus_tag="PM3016_381"
/codon_start=1
/transl_table=11
/product="integral membrane protein TerC"
/protein_id="YP_005310506.1"
/db_xref="GI:379718375"
/db_xref="GeneID:11882375"
/translation="MDLFSPEFWSALGAIIIIDLILAGDNAIVIGMASKDLPKEHQKK
AIYWGTAGAIIIRIIFTLVAVWLLQVPGLLLIGGLALVWIAYKLLADDKGHDNIKATT
SLKEAIRTIIIADAVMGIDNVLAVAGAAHGSFLLVVLGLIISVPIVVWGSTIILKLIE
RFPVIVYIGTAVLAMTAGKMITDEPLLKGFIGENDVLKWGIIIAIIAVVLLAGYAAKK
KQGGHHPQTG"
misc_feature complement(451660..452127)
/locus_tag="PM3016_381"
/note="integral membrane protein, YjbE family; Region:
R_switched_YjbE; TIGR03717"
/db_xref="CDD:163429"
gene complement(452731..454155)
/locus_tag="PM3016_382"
/db_xref="GeneID:11882376"
CDS complement(452731..454155)
/locus_tag="PM3016_382"
/codon_start=1
/transl_table=11
/product="Ricin B lectin"
/protein_id="YP_005310507.1"
/db_xref="GI:379718376"
/db_xref="GeneID:11882376"
/translation="MKSKSLLKVLTAASLIVSAMPLMSASAADPALVPYNLTGFSAGN
TGGGSIPETDTARYKKVYNAADLAAALKRGSGVKVVEIMNDLNLGWNELPAEAKISPF
TAHSTPLTHPVLKTTGVSKLTVDGFNGLTIFSANGAKIKHGAFVFKRSSNVIIRNLEF
DELWEWDEYTKGDYDKNDWDYVTLEENSKVWIDHCKFNKAYDGLVDVKKGTNGVTISW
STFKGDDGSAGSWVRKQIDAMEANPSAYPMYAYLRSSAIGLTKEDIIAVAASQKKGHL
VGATEFDSLNPNLQVTLHHNYYKDIQDRMPRLRGGNAHAYNIVMDSAAAYAAKKKITT
AMETALKSKGYKFGVTSNGAISTEGGAVLVEKSEIIDVASPVRNNQTDPADSSYTGKI
RVLDTLYSLNGTSFRGGSDTSGSPLAPVPAPVIAFSWNGFSTLPYSYTAEDPATLKAR
LTASNGAGAGKLIWSKDNWLKTSY"
misc_feature complement(453205..453798)
/locus_tag="PM3016_382"
/note="Pectate lyase; Region: Pec_lyase_C; cl01593"
/db_xref="CDD:207458"
gene 454643..455897
/locus_tag="PM3016_383"
/note="pectate lyase H"
/pseudo
/db_xref="GeneID:11882377"
gene 456181..457482
/locus_tag="PM3016_385"
/db_xref="GeneID:11882378"
CDS 456181..457482
/locus_tag="PM3016_385"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310508.1"
/db_xref="GI:379718377"
/db_xref="GeneID:11882378"
/translation="MLRIILFYVPMGTSALLAALTHVIINGVLARSANPDVTISSYAV
ALSLSFLIDLPMNIIRQTSSKYSRDRISFKSVARLTAIVSGALVAISAAIGWTPAGEL
LFRYVFGVKESLLEPTIGVYQVLAFMYVFTALRSLFQGVIINQLRTGWMTVGMAVRVA
VMFAMSWFFIREGMTHDGRIGAWIFVVGLIIECIVAVWEGMALRRGLPPAREEQTVGK
VGQLLPFYLPLLYSSMVLVLLNPSIQAALNKSMDPTLAVAAYAVAIQLANMVAWFCAS
VHQIVIQFYEDERRSVLLVVTCLSILSPALLLGVSSPLGGPLLEGLLGLHGPLLAEVR
HLLLFLSVQALLFPWIDFVAGKCMMLGRTKAIMASKMVSVGLSLGLLLLLVYTAPGLN
GLLAGLVTALAAPLELLVIWLWLKRLERRPAPPVLQETKPA"
gene 457686..458735
/locus_tag="PM3016_386"
/db_xref="GeneID:11882379"
CDS 457686..458735
/locus_tag="PM3016_386"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310509.1"
/db_xref="GI:379718378"
/db_xref="GeneID:11882379"
/translation="MSEQEAKSLLSLLFAHDGYSAEMHESLKKSLLEMSKKRTEVDYV
KIRHIHIALGDSPGGSLKIALKAPEGRKPEHRVLVLRDALPFSVGPLWKLEEEEGREE
RRRWCMLHINMDDRDEYLLQGEEQFLEMRSRLEGIPESLPVTIWAGSNAHEQAGLRFA
VYLLRDKENPVFLMDTTSAYASLHQTDPSYGRRRTGEMNPEELRGIWEMKACCRKLSP
EQRQSLESEWLELSGRKTGLRIWRDGRIVEVREDYYDSTLTAVVEQLHRERNNQEWIR
SARVVGEMIGHLEQDIGDEYVEYRLRHLIYHGVLEIQGVPRGMRYDDVRMKQPLTGLE
QRGGTEDHEEYVENL"
misc_feature 457830..458216
/locus_tag="PM3016_386"
/note="Domain of unknown function (DUF1835); Region:
DUF1835; pfam08874"
/db_xref="CDD:192170"
misc_feature 458325..458657
/locus_tag="PM3016_386"
/note="Protein of unknown function; Region: DUF3658;
pfam12395"
/db_xref="CDD:193009"
gene 458710..459747
/locus_tag="PM3016_387"
/db_xref="GeneID:11882380"
CDS 458710..459747
/locus_tag="PM3016_387"
/codon_start=1
/transl_table=11
/product="Leucine-rich repeat protein-like protein"
/protein_id="YP_005310510.1"
/db_xref="GI:379718379"
/db_xref="GeneID:11882380"
/translation="MKNMLKIYNDPKGDAYRKLIDYAMKRAAVFALADREIGAEEAPA
PGGGRAGALLRRLQPYLIRTCTMGEVRQRNNIGYSPKGTVYVYQCCPEAAEVLKKAAS
SMHAWQYPDLPEDLSFWDAEEEDWLVNVAHEEMLYIRLSEEEGRALAEEIPGVFVMGE
FNRGLDAFLEDALRHGAEKLELMGWGLEEVPEKLTRMTRLRELQLFEQDIRRLPPALF
GLRNLESLTVYTADLEEIPGEIGRLENLVQLSVYCCSYDRPHQAEKLIGIDEVTLSML
PPEIGELSKLEILRINATGLKRVPPELAKLKNLRVLDLGRNKLEAVPQELLEQLPNLV
HTSFEGNPFGE"
misc_feature 459562..459738
/locus_tag="PM3016_387"
/note="Leucine rich repeat; Region: LRR_8; pfam13855"
/db_xref="CDD:206026"
gene 459807..460865
/locus_tag="PM3016_388"
/db_xref="GeneID:11882381"
CDS 459807..460865
/locus_tag="PM3016_388"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310511.1"
/db_xref="GI:379718380"
/db_xref="GeneID:11882381"
/translation="MVKLKLSRPALFLFLAALILLLDSAAARWNPGASEDRLIAYAVL
FDLMLVVPLLYWFLVARPAGKPFLRILPFAALGTFVSWLVLPAALKETAWTVYWPLEL
LLIAAEAVILFYEGRLLYRAARRFRELVGEEPDTAERLRRAVREVLGEGVVSSVLLHD
ALMLYYVFYTWTKKADVTPSDSKKYSYTYHRNNNQILYAAMLTKILLLETAALHLIVQ
TWSTVAAWLLTAADLWLLTLIWADCRASVLQPVRLSAGGLRLRYGLRIQADLPWHRIA
SVEGVEWDVRRPEERRAAVLPLFGTPNVRIRLRSPARVQGLLLLPCEVTAIYLSLDEP
ERFIREWGLMAQDQGDRL"
gene complement(460973..461884)
/locus_tag="PM3016_389"
/db_xref="GeneID:11882382"
CDS complement(460973..461884)
/locus_tag="PM3016_389"
/codon_start=1
/transl_table=11
/product="ECF subfamily RNA polymerase sigma-70 subunit"
/protein_id="YP_005310512.1"
/db_xref="GI:379718381"
/db_xref="GeneID:11882382"
/translation="MENGTVAEQAYTTYKPLLFSLAYRMLGSVMDAEDIVQDAFLSLD
AAGPEPIRNLKAYLCRVVTNRCIDRLRSAQKQREVYVGPWLPEPLLTDGDPSGNPPEQ
YMLQESVSTAYLLLLQQLSSTERAVFLLREVLLYDYEEIASIVGKSQANCRQIFHRAK
RSIGGSASFDSGGDVCLAAPRPAAGQEARQLIEGFLTALATGDVPKLLSSLSEDASLF
SDGGGRVTAAVRPILGADRIIRFLTGLLEKSPPGFSYRPALVGGDPGLVTYIHGEPSS
VMSFEVAGGQIRAIYIVVNPEKLQHVR"
misc_feature complement(460976..461860)
/locus_tag="PM3016_389"
/note="RNA polymerase sigma-70 factor, TIGR02957 family;
Region: SigX4"
/db_xref="CDD:132002"
misc_feature complement(461657..461854)
/locus_tag="PM3016_389"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature complement(461396..461536)
/locus_tag="PM3016_389"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature complement(order(461405..461407,461411..461416,
461420..461428,461432..461437,461441..461443,
461471..461476,461492..461494,461522..461524))
/locus_tag="PM3016_389"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
misc_feature complement(461021..461311)
/locus_tag="PM3016_389"
/note="SnoaL-like domain; Region: SnoaL_2; pfam12680"
/db_xref="CDD:205015"
gene complement(461965..463278)
/locus_tag="PM3016_390"
/db_xref="GeneID:11882383"
CDS complement(461965..463278)
/locus_tag="PM3016_390"
/codon_start=1
/transl_table=11
/product="phytoene dehydrogenase enzyme"
/protein_id="YP_005310513.1"
/db_xref="GI:379718382"
/db_xref="GeneID:11882383"
/translation="MNPMEKNTYETAVIGGGLAGLLAAVMLGKAGQKVVLLEQSPRLG
GRAMTVERGGALFNLGGHALYRDGEAYAMLQELGLRLPGGSPPASGFAIWQGRVVPLP
GDPLKLLSSRLLSWSGKMEFGRLMLGLSKIDTTSLPRISLREWAEREVRDPMVRHIFY
ALCRTSTYSRDIDHQPAGPVLLQLQRSMKGGVLYLDGGWQTIVDQLRELAVKAGVTFA
EGQAVEEILHDDGQVSGIRLKGGGTLRVSAVLAAVSPASLFHLVRGAEETVLRRWKDE
ARPVKAACLDLALKRLPSPGRHFALGLDQPVFFSHHSRVAKLSRNGTLVVHMIKYGGG
DSDPQADEKLLEQTMSLLHPGWQNETAARQFLPNITVVHDAVHLGHSGPYPGPEVPGL
AGLYAAGDWASHGEMLADAAAASAGRAVRKLLQDSRHGVRLEALV"
misc_feature complement(462055..463182)
/locus_tag="PM3016_390"
/note="Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism]; Region: COG1233"
/db_xref="CDD:31426"
misc_feature complement(463048..>463182)
/locus_tag="PM3016_390"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
gene 463619..464086
/locus_tag="PM3016_391"
/db_xref="GeneID:11882384"
CDS 463619..464086
/locus_tag="PM3016_391"
/codon_start=1
/transl_table=11
/product="GNAT family acetyltransferase"
/protein_id="YP_005310514.1"
/db_xref="GI:379718383"
/db_xref="GeneID:11882384"
/translation="MIREAAGGDADRLAGFYRELAPSSRNVNVLPERVEQIRRDPNNF
LFIYEEEGIPLGTVFLTLCMDPAYEFRPYGVIEYMFVAESARGRGIGSALLEHAERLC
AAKHCTRVSLMSGSERTEAHRFYESRGYKGSASKAFKKYIRVTPVNWPEQPPS"
misc_feature 463751..463954
/locus_tag="PM3016_391"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(463853..463861,463889..463894)
/locus_tag="PM3016_391"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene complement(464280..464957)
/locus_tag="PM3016_392"
/db_xref="GeneID:11882385"
CDS complement(464280..464957)
/locus_tag="PM3016_392"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310515.1"
/db_xref="GI:379718384"
/db_xref="GeneID:11882385"
/translation="MTTQADLKHEILKAYEFRHACKEFDAGRQIPDEDFEFILETGRL
SPSSFGFEPWKFVVVQSPELRAKLLPVSWGAQGQLSTASHFVLLLSRTKEDLLAGSAY
LQNLMENIHHMPDNVVEMLSGFYKNFQENTYKLLDDDRYLQDWAGKQAYIALGNMLTA
AAQIGIDSCPIEGFDPEGVSKILEEEGILENGRYALTVMAAFGYRKNEPRPKTRQSLD
SVVQWIR"
misc_feature complement(464298..464930)
/locus_tag="PM3016_392"
/note="NAD(P)H:FMN oxidoreductase family. This domain
catalyzes the reduction of flavin, nitrocompound, quinones
and azo compounds using NADH or NADPH as an electron
donor. The enzyme is a homodimer, and each monomer binds a
FMN as co-factor. This family...; Region:
NfsB_like_nitroreductase; cd02149"
/db_xref="CDD:73307"
misc_feature complement(order(464298..464303,464307..464321,
464325..464327,464442..464444,464466..464468,
464481..464483,464490..464495,464502..464507,
464511..464516,464523..464528,464778..464795,
464802..464804,464808..464810,464814..464816,
464823..464831,464841..464843,464922..464927))
/locus_tag="PM3016_392"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73307"
misc_feature complement(order(464316..464318,464322..464324,
464439..464444,464448..464450,464724..464726,
464892..464894,464898..464906))
/locus_tag="PM3016_392"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73307"
gene 465209..465883
/locus_tag="PM3016_393"
/db_xref="GeneID:11882386"
CDS 465209..465883
/locus_tag="PM3016_393"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310516.1"
/db_xref="GI:379718385"
/db_xref="GeneID:11882386"
/translation="MQYHQITEINDKHFRAMHELMGRVFPPEEVLEYDLWAEPLQDPG
IRVFVAVLDGEVVGATEYRYYEDLGVAMTDFTIIGRDAIGVGPFLAGQRMEDLRKVVA
ASGGTLQGMFAEIYNPYLSEKLEFGGVKAMNPFVRREVLAHLGYRKLDFDYVHPSWHN
DGEAVHGLDLCFMPIADAKQADVPAELVSTFLERYYAVLPQKPQAWYTMVEGLKGRER
VGLKAI"
gene complement(466029..466691)
/locus_tag="PM3016_394"
/db_xref="GeneID:11882387"
CDS complement(466029..466691)
/locus_tag="PM3016_394"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310517.1"
/db_xref="GI:379718386"
/db_xref="GeneID:11882387"
/translation="MPSRKKELLVSFDPPAAAGPSGAAGGDAATAAESAAPKKSAAAR
HRRSASALKAEAAARAVAASEEPAETALLAAAAGITAAEAEAAADSGTVAETAETAAQ
DDPPAVPEAPEAQRAAFAVAASDAPAETAALIASAGGVDAVPETVLQALETRLKKKER
KETHEKDRVYLRKDLRERLEALAENRGKGFKTLLLNYGLERALDELEAAEARRRSGTE
EE"
gene complement(466660..467475)
/locus_tag="PM3016_395"
/db_xref="GeneID:11882388"
CDS complement(466660..467475)
/locus_tag="PM3016_395"
/codon_start=1
/transl_table=11
/product="putative partition protein/ATPase"
/protein_id="YP_005310518.1"
/db_xref="GI:379718387"
/db_xref="GeneID:11882388"
/translation="MGNVIAVCMNKGGVGKTTLVTHLAAVLASGADPAKVLVVDIDPQ
GNAAVVFGRDPDRLERGSTADVLLRGTPLADITVPVSDHLDLAPASDELNGSEVQVLG
QPGRYARPLHLLKEAVGRVKKEYDWILIDCPPSLGLLTANAVKAADGVLVPFVPEAFS
VKGLQRVVQAIEGLRDEGSPSPRIVGVAATMVDSRSTLHGELLASARAYCAAQGFPML
ETVIPRSIRYANAAAYEGRPAVWSDRSHPAVAPYFELTKEVLAHAVPKKRTAR"
misc_feature complement(466690..467475)
/locus_tag="PM3016_395"
/note="ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning]; Region: Soj;
COG1192"
/db_xref="CDD:31385"
misc_feature complement(<467344..467466)
/locus_tag="PM3016_395"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature complement(467425..467445)
/locus_tag="PM3016_395"
/note="P-loop; other site"
/db_xref="CDD:73302"
misc_feature complement(467425..467427)
/locus_tag="PM3016_395"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
misc_feature complement(466906..>467103)
/locus_tag="PM3016_395"
/note="ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the...; Region:
ParA; cd02042"
/db_xref="CDD:73302"
misc_feature complement(467083..467085)
/locus_tag="PM3016_395"
/note="Magnesium ion binding site [ion binding]; other
site"
/db_xref="CDD:73302"
gene 467672..468409
/locus_tag="PM3016_396"
/db_xref="GeneID:11882389"
CDS 467672..468409
/locus_tag="PM3016_396"
/codon_start=1
/transl_table=11
/product="WecB/TagA/CpsF family glycosyl transferase"
/protein_id="YP_005310519.1"
/db_xref="GI:379718388"
/db_xref="GeneID:11882389"
/translation="MKQTAKVMGVTFSKDTLAGTVKTIIGHLDKKDADYMHIITCNPE
IVMASAHDEELRNILGDAGLVTADGIGIVLASRWLGDPLPERVTGFDILMGLLEEGGR
KGYSFYLFGADPETNAKAAEVISAKYPGLRIAGRQHGYYKPEEEGRIIGEIAAAKPDI
LVVALGAPRAERWLYRNRAKLPVRAAMGVGGSLDVIAGKVKRAPVIWQKMNLEWLYRL
LSEPSRWRRQLVLPKFAVRALFSRGRS"
misc_feature 467852..468355
/locus_tag="PM3016_396"
/note="The glycosyltransferase WecG/TagA superfamily
contains Escherichia coli WecG, Bacillus subtilis TagA and
related proteins. E. coli WecG is believed to be a
UDP-N-acetyl-D-mannosaminuronic acid transferase, and is
involved in enterobacterial common...; Region:
Glyco_transf_WecG_TagA; cd06533"
/db_xref="CDD:119439"
gene complement(468564..469223)
/locus_tag="PM3016_397"
/db_xref="GeneID:11882390"
CDS complement(468564..469223)
/locus_tag="PM3016_397"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310520.1"
/db_xref="GI:379718389"
/db_xref="GeneID:11882390"
/translation="MYDMIAAGGGSLWSYAAMLLLAAVPWVDVFVVIPLGIAWGMNPA
GTAVSAFIGNWIPLLLLALFFREFSAWRARRKARKAGRRAAQAEAGLPQAETAGAGEA
LPAEAPHGGGSEAPHAVPPPPVQDGAGNGEAVLGTSKKYARAKRIWEKYGVPGLALVA
PVLLGTDLAALVALTFGSSRRWVMLWMTVSLVLWTVLLTVGSVYGLGYMGLFRPEAGP
T"
gene 469487..471572
/locus_tag="PM3016_398"
/note="putative ATP-dependent DNA helicase"
/pseudo
/db_xref="GeneID:11882391"
gene 471624..472304
/locus_tag="PM3016_400"
/db_xref="GeneID:11882392"
CDS 471624..472304
/locus_tag="PM3016_400"
/codon_start=1
/transl_table=11
/product="protein RnhA"
/protein_id="YP_005310521.1"
/db_xref="GI:379718390"
/db_xref="GeneID:11882392"
/translation="MTKSKWYVVWEGRQPGVYKTWAECQAQTSGFPQAKFKAYESEAE
AKAMLAAGWKKAFSAAQKAGVSGGAGTAGSRGGGARAAADAARASGTEADLDSLSVDV
GCSGNPGIVEYKGVHTRTGEVLFEHAPISKGTNNMGEFLAIVHGLAYLKQKGSSMTIY
SDSMTAIAWVRNKKVASTLVRDASTKEIWTLVDRAEEWIRQNTWPNKILKWNTKAWGE
IKADYGRK"
misc_feature 471633..472301
/locus_tag="PM3016_400"
/note="Predicted double-stranded RNA/RNA-DNA hybrid
binding protein [General function prediction only];
Region: COG3341"
/db_xref="CDD:33150"
misc_feature 471639..471764
/locus_tag="PM3016_400"
/note="Caulimovirus viroplasmin; Region: Cauli_VI;
pfam01693"
/db_xref="CDD:201924"
misc_feature 471921..>472145
/locus_tag="PM3016_400"
/note="RNase H is an endonuclease that cleaves the RNA
strand of an RNA/DNA hybrid in a sequence non-specific
manner; Region: RNase_H; cd06222"
/db_xref="CDD:187690"
misc_feature order(471924..471935,472026..472031,472038..472040,
472107..472109)
/locus_tag="PM3016_400"
/note="RNA/DNA hybrid binding site [nucleotide binding];
other site"
/db_xref="CDD:187690"
misc_feature order(471924..471926,472107..472109)
/locus_tag="PM3016_400"
/note="active site"
/db_xref="CDD:187690"
gene 472451..472684
/locus_tag="PM3016_401"
/db_xref="GeneID:11882393"
CDS 472451..472684
/locus_tag="PM3016_401"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310522.1"
/db_xref="GI:379718391"
/db_xref="GeneID:11882393"
/translation="MNPYLGTWIQRASSATDHLPWGRWFLYFLIRGGTELETLKIEEI
IRQLGIAEERFAKWCEELEMERPDSSEDGQAET"
gene complement(472797..473408)
/locus_tag="PM3016_402"
/db_xref="GeneID:11882394"
CDS complement(472797..473408)
/locus_tag="PM3016_402"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310523.1"
/db_xref="GI:379718392"
/db_xref="GeneID:11882394"
/translation="MISIDPQQQSDRENYKLLIGSIVPRPIALVTTLSQEGVLNAAPF
SYFNIVASQPPLVSVSVQRKQGERKDTARNAADTGSFVIHITDESIVEKANKTAAALP
PGESEVERAGLTPVASDAIPVPGLQEARIRMECVLEQAIELGGTGGVPACDLLIGRVV
RFHLDEELYDRGHIDPEKLQPVARMAGNFYSRLGTLFELERPE"
misc_feature complement(472836..473378)
/locus_tag="PM3016_402"
/note="Conserved protein/domain typically associated with
flavoprotein oxygenases, DIM6/NTAB family [General
function prediction only]; Region: COG1853"
/db_xref="CDD:32038"
gene complement(473405..474028)
/locus_tag="PM3016_403"
/db_xref="GeneID:11882395"
CDS complement(473405..474028)
/locus_tag="PM3016_403"
/codon_start=1
/transl_table=11
/product="protein MhqD"
/protein_id="YP_005310524.1"
/db_xref="GI:379718393"
/db_xref="GeneID:11882395"
/translation="MKHIYQQGSRPEAPTLVLFHGTGGTEHDLLGLAGRIAPGAAVLS
LRGNVLENGMPRFFRRLAEGVFDEEDLIFRTKEVYDFLDEAAAKYGFDRNHLVAVGYS
NGANIIGSLLFHYARAFRGAILHHPMVPRRGIELPDASGLPVFIGAGKNDPICTPQET
EDLQALLSGAGADVTVHWESYGHQLTPSEAAAASSWFAEHFGGGDSR"
misc_feature complement(473468..474028)
/locus_tag="PM3016_403"
/note="Esterases and lipases (includes fungal lipases,
cholinesterases, etc.) These enzymes act on carboxylic
esters (EC: 3.1.1.-). The catalytic apparatus involves
three residues (catalytic triad): a serine, a glutamate or
aspartate and a histidine.These...; Region:
Esterase_lipase; cl12031"
/db_xref="CDD:211462"
misc_feature complement(473423..473998)
/locus_tag="PM3016_403"
/note="Predicted esterase [General function prediction
only]; Region: COG0400"
/db_xref="CDD:30749"
gene complement(474025..474969)
/locus_tag="PM3016_404"
/db_xref="GeneID:11882396"
CDS complement(474025..474969)
/locus_tag="PM3016_404"
/codon_start=1
/transl_table=11
/product="protein MhqO"
/protein_id="YP_005310525.1"
/db_xref="GI:379718394"
/db_xref="GeneID:11882396"
/translation="MKTAGIHHITAFARDPQQNVDFYAGVLGLRLVKKTINFDAPEVY
HLYFGNEAGSPGTIITFFPWPNSRRGRIGGGQVGITSYAVPAGSLAFWEERLARFGIQ
TEKVTRFSETSLQFSDNEGLRLEIVERVEGANSRWSFGGIPGQHAIKGFAGAVLFSTN
PARTKDALEQLLGFVKEAEDAGYTRFRSEAGIGNVIDVPHAAMERGSDGAGTVHHIAW
RAEDFEHHEAWRTAVQAYGYQPTPVVDRQYFNALYFREAGGILFEIATDPPGFAKDEA
PEALGEKVMLPEWYEPHRAQIEANLLPIEVRVLEGDQS"
misc_feature complement(474589..474957)
/locus_tag="PM3016_404"
/note="N-terminal domain of Sphingobium chlorophenolicum
2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and
similar proteins; Region: PcpA_N_like; cd08346"
/db_xref="CDD:211356"
misc_feature complement(474592..474957)
/locus_tag="PM3016_404"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature complement(order(474940..474942,474946..474948))
/locus_tag="PM3016_404"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:211356"
misc_feature complement(474058..474522)
/locus_tag="PM3016_404"
/note="C-terminal domain of Sphingobium chlorophenolicum
2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and
similar proteins; Region: PcpA_C_like; cd08347"
/db_xref="CDD:176695"
misc_feature complement(474178..474510)
/locus_tag="PM3016_404"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
misc_feature complement(order(474181..474183,474325..474327))
/locus_tag="PM3016_404"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:176695"
gene complement(475097..475504)
/locus_tag="PM3016_405"
/db_xref="GeneID:11882397"
CDS complement(475097..475504)
/locus_tag="PM3016_405"
/codon_start=1
/transl_table=11
/product="DoxX family protein"
/protein_id="YP_005310526.1"
/db_xref="GI:379718395"
/db_xref="GeneID:11882397"
/translation="MVTLTALGLFLIRLVVGVLFIGHGAQKLFGWFGGYGPKGTGGWM
DSIGIKPGVLMAVLAGLMELAGGLLFTLGLLTPLAAVLLAATMLGAIVKVHGANGLWS
TSNGYEYPLVLLVVVIGIALTGAGALSLDALLS"
misc_feature complement(<475349..475483)
/locus_tag="PM3016_405"
/note="DoxX; Region: DoxX; pfam07681"
/db_xref="CDD:203722"
gene complement(475584..476033)
/locus_tag="PM3016_406"
/db_xref="GeneID:11882398"
CDS complement(475584..476033)
/locus_tag="PM3016_406"
/codon_start=1
/transl_table=11
/product="MarR family transcriptional regulator"
/protein_id="YP_005310527.1"
/db_xref="GI:379718396"
/db_xref="GeneID:11882398"
/translation="MPHSVSDAHAASLKLLVVLSKAYKTVMDRAVKDMKQYELSPSEF
TILEVLYTKGRIPLQQIGEKILITSGTITYNIDKLEKKGLLKRVPCQEDRRVIYAEMT
PAGNELFDRIFPDHADTIHGLMQGLTPEEKETAVELLKKLGKGAEDR"
misc_feature complement(475638..475940)
/locus_tag="PM3016_406"
/note="helix_turn_helix multiple antibiotic resistance
protein; Region: HTH_MARR; smart00347"
/db_xref="CDD:197670"
misc_feature complement(475743..475919)
/locus_tag="PM3016_406"
/note="MarR family; Region: MarR; pfam01047"
/db_xref="CDD:201571"
misc_feature complement(475608..>475805)
/locus_tag="PM3016_406"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
gene complement(476259..477251)
/locus_tag="PM3016_407"
/db_xref="GeneID:11882399"
CDS complement(476259..477251)
/locus_tag="PM3016_407"
/codon_start=1
/transl_table=11
/product="helix-turn-helix type 11 domain-containing
protein"
/protein_id="YP_005310528.1"
/db_xref="GI:379718397"
/db_xref="GeneID:11882399"
/translation="MVSWKKRRHKEGSKLKLDRLLAITMLLLNRRRVSAKELSERFEV
SLRTIYRDLEAINGAGIPVASYAGASGGYEIMETYRIERQYLSLEELQSIIVALRGIQ
TTLAEPDIDIGSLLDKVGSLVARTASGGTADLRLEMILDLNPWQGGQAEKAKLHLLKQ
AIRAQQLISFGYTSSQGEDSARTCEPMGVVLKGYIWYLYGFCRLRTDFRIFRLSRIMD
LTLLGETFERRAGELEELRFGWNADYHAKRALLGLVLQFSPRAKAKVQDGFEESEIET
RPDGSLLVRCQRPDEPWLYSMLMSYGTDVRVLEPSSVADMLRQKAQEIVRMYGR"
misc_feature complement(476265..477206)
/locus_tag="PM3016_407"
/note="Predicted transcriptional regulator
[Transcription]; Region: COG2378"
/db_xref="CDD:32525"
misc_feature complement(477033..477197)
/locus_tag="PM3016_407"
/note="HTH domain; Region: HTH_11; pfam08279"
/db_xref="CDD:116863"
misc_feature complement(476277..476795)
/locus_tag="PM3016_407"
/note="WYL domain; Region: WYL; pfam13280"
/db_xref="CDD:205460"
gene complement(477402..478634)
/locus_tag="PM3016_408"
/db_xref="GeneID:11882400"
CDS complement(477402..478634)
/locus_tag="PM3016_408"
/codon_start=1
/transl_table=11
/product="protein AmpS"
/protein_id="YP_005310529.1"
/db_xref="GI:379718398"
/db_xref="GeneID:11882400"
/translation="MSNFQELLSRYAELIVKTGVKIQKGQKLVVNSTIDAAELVRLIT
KHAYEEGAYLVKVNWTDDTITRLRYDMAPEESFLEEPKWYAGEMLELAENGAAVVSIT
SSDPDLLKGVPQSRIMNHQKTYGKAMHQFRQYMQSDKFSWCVAAAPSKAWAAKVFPGL
SEEEQVAKLWEAILRTVRVDREDPVAAWEEHIRHLNAKSDFLNEKKFKKLHYTAPGTD
LTIELPEGHLWVAADSINEKGISFLANMPTEEVFTAPRYDGVNGTVSSTKPLSYGGNL
IDNFKLTFENGKIVDVSAEQGEDTLRTLIDMDEGARYLGEVALVPHESPISQSGLLFY
NTLFDENASNHLAIGSAYAFNLEGGKGLSQEELKARGLNTSITHVDFMIGSAEMDIDG
ITADGTTVPLFRKGNWAI"
misc_feature complement(477411..478628)
/locus_tag="PM3016_408"
/note="Thermophilic metalloprotease (M29); Region:
Peptidase_M29; pfam02073"
/db_xref="CDD:145308"
gene complement(478788..480158)
/locus_tag="PM3016_409"
/db_xref="GeneID:11882401"
CDS complement(478788..480158)
/locus_tag="PM3016_409"
/codon_start=1
/transl_table=11
/product="sodium:neurotransmitter symporter"
/protein_id="YP_005310530.1"
/db_xref="GI:379718399"
/db_xref="GeneID:11882401"
/translation="MAQSKLDPNERSLTEQFSRSGFILTAIGSAVGLGNMWKFPYITG
KYGGAAFFLLFTICLLVVGLPVLLAELSIGRGGRGNAYSSFVKLSGSKRWGALGFLSV
IAAFLIMTFYSVVAGWTLHYAAMSFSGSLFSSTDYTKQFLDFAGGFWPVFWQTVVVLL
NIWIVARGISGGIEKFNKILIPGLLILLIILMARSLTLPGAMQGVEFFLKPDFSKLSA
ESALVALGHAFFSLSLGMGIMITYGSYIDKRQSLGAATMAVGAGDLLYALVAGLIIFP
TSFSFGIEPSQGAGLVFMALPAAFAAMPLGAFFGGLFFILLAIAALTSSVSILEVPVA
YAMDKWNWTRSKATWIVALATFVLGVPSALSVGGVLGDVTIIDGKNIMDSADFLASNI
LLPLGGLIVTLFVGYKWSAAVQEAGMTPMWLRLWIIVLRYVAPVLVVAILLYTAGALK
WIGIGE"
misc_feature complement(478827..480110)
/locus_tag="PM3016_409"
/note="solute carrier 6 subfamily, Fusobacterium nucleatum
Tyt1-like; solute-binding domain; Region:
SLC6sbd_Tyt1-Like; cd10336"
/db_xref="CDD:212043"
misc_feature complement(order(479187..479192,479199..479201,
480066..480068,480075..480077))
/locus_tag="PM3016_409"
/note="Na2 binding site [ion binding]; other site"
/db_xref="CDD:212043"
misc_feature complement(order(479175..479180,479187..479189,
479445..479447,479451..479453,479466..479471,
479823..479825,480054..480065,480069..480074))
/locus_tag="PM3016_409"
/note="putative substrate binding site 1 [chemical
binding]; other site"
/db_xref="CDD:212043"
misc_feature complement(order(479370..479372,479466..479468,
480054..480056,480069..480071))
/locus_tag="PM3016_409"
/note="Na binding site 1 [ion binding]; other site"
/db_xref="CDD:212043"
misc_feature complement(order(479280..479282,479292..479294,
479805..479807,479814..479816,479826..479828,
480045..480050))
/locus_tag="PM3016_409"
/note="putative substrate binding site 2 [chemical
binding]; other site"
/db_xref="CDD:212043"
gene 480494..482632
/locus_tag="PM3016_410"
/db_xref="GeneID:11882402"
CDS 480494..482632
/locus_tag="PM3016_410"
/codon_start=1
/transl_table=11
/product="PAS/PAC sensor-containing diguanylate
cyclase/phosphodiesterase"
/protein_id="YP_005310531.1"
/db_xref="GI:379718400"
/db_xref="GeneID:11882402"
/translation="MGHETGREPWEIERSQWLQRVRELEQRERELLQQLRTQENLNSK
ILDALPMDIFMEDAEGRTIYANQATYKRNRLTEEELLGRTLYDFFPYEVAERFRRENL
EVWRTGRLITSEGTSLVGGDEIYLYTGKTLICPDEQTGEKLLLGFALDITDRVLAEKS
LRESEERFRKLVDQAADSFFLMDGSGQFLDVNRQACLSLGYTEEELLTMQAGQISSFP
AGELLRLHERVVEEGMIQLEDEFRRKDGTRLPVDIRLGLVQVGDKQMVLALCRDMTER
KKAAEKIEHMAYHDALTGLPNRWFVHKRVMECTAGKKGQAKPLAVVMFDLDHFKVIND
SLGHKAGDRLLQQVAERLRRELAFADTIARLGGDEFLLLVPGVDTEEEALRAGRSVTG
LLKEPFELSGQKISVTASVGIALYPRDGGTMDSLVRSADIAMYRSKELGRNACRLFAP
SMKDEAKERLRMEVLLREAIVEKQLVLHYQPKLDLRSGRVYGVEALVRWNSPEQGLVY
PGAFIGIAEETGLIVPMGEWIVREACRQCREWLDAGLGPLTVSVNLSARQFAKADLGR
KIAAILGETGLPPNLLELELTESTVMGNPEEAARMLQSLKELGVCISIDDFGTGFSSL
SYLTRFPIDTLKIDKSFISRLEEEQANGAIAAGIVSLAHSLHLKVVAEGVETQRQLDF
LAAKGCDAVQGFHISRGLDPCALEAFLQQR"
misc_feature 480629..480958
/locus_tag="PM3016_410"
/note="PAS fold; Region: PAS_4; pfam08448"
/db_xref="CDD:117025"
misc_feature 480983..481342
/locus_tag="PM3016_410"
/note="PAS domain S-box; Region: sensory_box; TIGR00229"
/db_xref="CDD:211562"
misc_feature 480989..>481114
/locus_tag="PM3016_410"
/note="PAS domain; Region: PAS; smart00091"
/db_xref="CDD:197512"
misc_feature order(481064..481066,481076..481078,481094..481096,
481133..481144,481214..481216,481229..481231)
/locus_tag="PM3016_410"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature order(481124..481126,481136..481138,481160..481162,
481169..481174,481250..481252,481256..481258)
/locus_tag="PM3016_410"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
misc_feature 481355..481831
/locus_tag="PM3016_410"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(481466..481468,481595..481597)
/locus_tag="PM3016_410"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(481481..481483,481490..481495,481505..481507,
481517..481519,481583..481585,481589..481600)
/locus_tag="PM3016_410"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(481571..481573,481658..481660)
/locus_tag="PM3016_410"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 481889..482599
/locus_tag="PM3016_410"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene 482989..484812
/locus_tag="PM3016_411"
/db_xref="GeneID:11882403"
CDS 482989..484812
/locus_tag="PM3016_411"
/codon_start=1
/transl_table=11
/product="protein ThiC"
/protein_id="YP_005310532.1"
/db_xref="GI:379718401"
/db_xref="GeneID:11882403"
/translation="MTSENRIENGNAPAAEAVQGEGAAAKIAGAFPGSRKVYVEGSRP
DLKVAMREIELSPSTGRYGEEPNAPVRVYDTSGPYTDAGAKTDIRQGLQPSRLPWILS
REDVESYEGREVKPEDNGYLHAESVKEELLFPGLKRRPLRAKAGSNVTQLHYARKGII
TPEMEYIAIRENVDPEFVRSEVARGRAIIPSNINHPESEPMIIGRNFLVKVNANIGNS
AVASSIDEEVEKMTWAIRWGADNIMDLSTGKNIHMTREWIIRNSPVPVGTVPIYQALE
KVNGKAEDLTWEVYRDTLIEQAEQGVDYFTIHAGVLLRYIPMTAKRVTGIVSRGGSIM
AAWCLAHHQENFLYTHFDEICEIMKTYDVAFSLGDGLRPGSIADANDEAQFAELDTLG
ELTHRAWKHDVQVMIEGPGHVPMHLIKENVDRQLEVCDEAPFYTLGPLTTDIAPGYDH
ITSAIGAAMIGWFGTAMLCYVTPKEHLGLPNKNDVREGVIAYKIAAHAADLAKGHPGA
QERDNALSKARFEFRWRDQFHLALDPERAMEYHDETLPAEGAKTAHFCSMCGPKFCSM
RITQDIREYAREHGLGEAEALRAGMEEKSKEYAETGSGVYR"
misc_feature 483073..484809
/locus_tag="PM3016_411"
/note="thiamine biosynthesis protein ThiC; Provisional;
Region: PRK09284"
/db_xref="CDD:181756"
misc_feature 483073..483309
/locus_tag="PM3016_411"
/note="ThiC-associated domain; Region: ThiC-associated;
pfam13667"
/db_xref="CDD:205844"
misc_feature 483436..484707
/locus_tag="PM3016_411"
/note="ThiC family; Region: ThiC; pfam01964"
/db_xref="CDD:202065"
gene 485092..486015
/locus_tag="PM3016_412"
/db_xref="GeneID:11882404"
CDS 485092..486015
/locus_tag="PM3016_412"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310533.1"
/db_xref="GI:379718402"
/db_xref="GeneID:11882404"
/translation="MNMGLKKNGKVWKTAVPLALGGVLLVSSGMSAMAGTSGYEAYKA
ALKQQHTVQSVTADVKMVLKDNSQPLWQAAQHVKLDKAGHRASGEVELQEGAETERVA
FFAGAEEDLVFKNSTEETYYVVSEDERAGRKHHRESGKEGGPTAEELEGIVDALAGGL
KQQMTLETKPDGGSQVELQLSAAQIPPAVQALGALALKYAGDGEHRHAPGKEGLPAWF
GGTEPDLPALTQDIRIESFRLTADIAPDGMLQGQVVELKVDGKDAAGAEHELALTAQV
ALSGHNATAADTVELDGKQVRTLDLHGDGRK"
gene 486120..486857
/locus_tag="PM3016_413"
/db_xref="GeneID:11882405"
CDS 486120..486857
/locus_tag="PM3016_413"
/codon_start=1
/transl_table=11
/product="ABC transporter"
/protein_id="YP_005310534.1"
/db_xref="GI:379718403"
/db_xref="GeneID:11882405"
/translation="MMNDPVLEVSGLTKLFRSGRGIQEMNLTVGEGEIYGLFGPNGAG
KTTLLKLVTGLIPAAGGQVRWFGHSLEDEYEEAMKRVGCVLEAGSTYGYLTAREQLEQ
VRRHYPGLAAARMDEVLELTGLRPYAGEKTRGFSLGMKQRLALAAALLPRPAFVLLDE
PTNGLDIEGILEIRRVIRQLAAEEGVTFLISSHLIGEMEQVCSRAGVLLGGRLVLEGT
VPDLLREYGSLEAMYLAAAGRPLREGA"
misc_feature 486135..486698
/locus_tag="PM3016_413"
/note="ABC exporter ATP-binding subunit, DevA family;
Region: heterocyst_DevA; TIGR02982"
/db_xref="CDD:132027"
misc_feature 486138..486731
/locus_tag="PM3016_413"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 486234..486257
/locus_tag="PM3016_413"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(486243..486248,486252..486260,486375..486377,
486594..486599,486696..486698)
/locus_tag="PM3016_413"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 486366..486377
/locus_tag="PM3016_413"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 486522..486551
/locus_tag="PM3016_413"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 486582..486599
/locus_tag="PM3016_413"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 486606..486617
/locus_tag="PM3016_413"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 486684..486704
/locus_tag="PM3016_413"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 486861..487613
/locus_tag="PM3016_414"
/db_xref="GeneID:11882406"
CDS 486861..487613
/locus_tag="PM3016_414"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310535.1"
/db_xref="GI:379718404"
/db_xref="GeneID:11882406"
/translation="MHAFYASLRNELARLAAQPKTRWFLAASLLLPLGLSLLSSRLQG
GGGLSALLSGDPYLALLGGYTAFVLPLFLFMTAADQFPGEREEGTMVLTLLRPVSRAK
IYGAKVAAAAVYTGLQLLLLAVVSLLCSLLLPGSAPAVLDPLSFFRAAVAAWAAMLAV
GAVGAALVQLTGRATTGLALCLVLYGALKLLPLLLPGLSVWSLFSYTGWHALWLGDGV
PAVRLWNLSLLLLAYSIIAYTGGLAIFNKKSF"
misc_feature <487029..>487160
/locus_tag="PM3016_414"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:213123"
gene 487637..489133
/locus_tag="PM3016_415"
/db_xref="GeneID:11882407"
CDS 487637..489133
/locus_tag="PM3016_415"
/codon_start=1
/transl_table=11
/product="two-component sensor histidine kinase"
/protein_id="YP_005310536.1"
/db_xref="GI:379718405"
/db_xref="GeneID:11882407"
/translation="MSIRMKLILSNIAMVVVPVLLFALTTVLVAALVMNNAFGLKSLV
LPGIGLEENAVEEHFDSKSEWYTVLQYFAREEPERFRDPDFLQQTGEKLASLESGIVV
LQEGKVTFASQAIGRVDDPSALLALPDVSGRERHEHEIVLGGVAYYVFSHELRFGDGG
TGVLVMLEDQRPLGMVTRRVFPIVLGILLLVLAVTNGGLTYLVSRSIIRPLRELKAAA
ERIKDGRLEEALELRRRDEIGEVGAAFEEMRQRLLDSIRTQLQYEDNRKELLTNISHD
LKTPITAIQSCAEGLRDGIADTPEKQAKYVGMIHSKALHLNRLIDELFLFSKLDLKRL
PFHFEPLELRAYLMDYAEELKVDPRMREMQVRFEAVETGPRVWVQADREKLGRVLMNI
VDNAVKHAREPQAQLQIALRTEDGEAELTLEDNGPGIEPQALPWVFDRFYRADLSRRT
DTGGSGLGLAIVKGIVEEHGGRVRAESGPDRGTAIVITLPLLAEVPEP"
misc_feature 488255..488398
/locus_tag="PM3016_415"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(488255..488260,488267..488272,488276..488281,
488288..488293,488297..488299,488345..488350,
488354..488359,488366..488371,488375..488380,
488387..488392)
/locus_tag="PM3016_415"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 488423..488620
/locus_tag="PM3016_415"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature order(488441..488443,488453..488455,488465..488467,
488474..488476,488486..488488,488495..488497,
488549..488551,488561..488563,488570..488572,
488582..488584,488591..488593,488603..488605)
/locus_tag="PM3016_415"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature 488459..488461
/locus_tag="PM3016_415"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature 488789..489103
/locus_tag="PM3016_415"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(488807..488809,488819..488821,488828..488830,
488900..488902,488906..488908,488912..488914,
488918..488923,489002..489013,489059..489061,
489065..489067,489080..489085,489089..489091)
/locus_tag="PM3016_415"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 488819..488821
/locus_tag="PM3016_415"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(488912..488914,488918..488920,489002..489004,
489008..489010)
/locus_tag="PM3016_415"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 489185..489886
/locus_tag="PM3016_416"
/db_xref="GeneID:11882408"
CDS 489185..489886
/locus_tag="PM3016_416"
/codon_start=1
/transl_table=11
/product="two-component response regulator"
/protein_id="YP_005310537.1"
/db_xref="GI:379718406"
/db_xref="GeneID:11882408"
/translation="MKRILIIEDESVIAEVQKDYLEVSGYAVEIAATGEAGLQKALLE
PYDLILLDLMLPGVDGYEICRQVRAAKNIPILMVSARREEIDKIRGLGLGADDYIMKP
FSVGELVARVKAHLARFERLTGGGGSGESRGRDSLQVGGLIIDTLSRKVHVNGREVAF
TSKEYDLLVFLVQHPNRVFGKEQIFERIWGLDAMGDNATVTVHISKLREKIESDPSKP
QYIETIWGVGYRFNV"
misc_feature 489188..489880
/locus_tag="PM3016_416"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature 489197..489532
/locus_tag="PM3016_416"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(489206..489211,489338..489340,489362..489364,
489419..489421,489476..489478,489485..489490)
/locus_tag="PM3016_416"
/note="active site"
/db_xref="CDD:29071"
misc_feature 489338..489340
/locus_tag="PM3016_416"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(489347..489352,489356..489364)
/locus_tag="PM3016_416"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 489485..489493
/locus_tag="PM3016_416"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 489593..489877
/locus_tag="PM3016_416"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature order(489665..489667,489722..489727,489779..489781,
489788..489790,489812..489817,489851..489853,
489866..489868)
/locus_tag="PM3016_416"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene complement(490168..491019)
/locus_tag="PM3016_417"
/db_xref="GeneID:11882409"
CDS complement(490168..491019)
/locus_tag="PM3016_417"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_005310538.1"
/db_xref="GI:379718407"
/db_xref="GeneID:11882409"
/translation="MLQIENIRRDAGTMPWFEEVEREADSWSFILMGYGKCVYWVQGE
KMLLEKGDVLLLPPGVTYYGKSIPSLTHEKYVTTFSSGAGGASPLPLLASDQPLRWRC
AAWELLLARAQTMAQEWAEGAPYAGVLCSALLLESLTRLNREYDKGPHTALLHRQGEL
MTAYLRNHYREKVTKEDLAAVIGRSPGHAAVLFREATGQTISEYTHGLRMKTAVYLLR
HSDLTVADIAEQLGYCDPSFFTAPSSVLPACLLRITSRSGKPRFVSPCLFHYPPAAHL
PAEFTGS"
misc_feature complement(490297..490608)
/locus_tag="PM3016_417"
/note="AraC-type DNA-binding domain-containing proteins
[Transcription]; Region: AraC; COG2207"
/db_xref="CDD:32389"
misc_feature complement(490402..490527)
/locus_tag="PM3016_417"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 491179..492597
/locus_tag="PM3016_418"
/db_xref="GeneID:11882410"
CDS 491179..492597
/locus_tag="PM3016_418"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310539.1"
/db_xref="GI:379718408"
/db_xref="GeneID:11882410"
/translation="MRKTKIICTLGPACDNLEVLKEMIRAGMNVARLNMAHGDLDEQR
TRIRRVRQAASELGAAVAVLLDIKGPEVRIGKLKDSSYELKTDGKLTLTTEIIEGTAE
RISVSYAQLPQDLHPGSRILIDDGLIELRVEEVEGTEIHCRIVNGGVIKPRKGVNLPG
VKTSLPGVTERDVQHIHFAAEEDLDIIAVSFVRRAADILEVRELLEQLGAGHIQIISK
IENEEGVDELDAILEVSDGLMVARGDLGVEIPVEDVPILQKLMIRKCNQAGKPVITAT
HMLDSMQVNPRPTRAEASDVANAVLDGTDVLMLSGESAAGKYPVESVQTMAAIAERTE
ATLPYWDNYVKRAAEQTPNVTEVISQAVVGSSLELNAKAILTPTETGFTARMVSKYRP
KAPIVAIAPDERIRRRMSLIWGVTPVLGEPVTSTDAMFLSAVDGGKKSGLVEAGDLVI
VSAGVPIGGAGSTNLIKIMNAE"
misc_feature 491179..492582
/locus_tag="PM3016_418"
/note="Pyruvate kinase (PK): Large allosteric enzyme that
regulates glycolysis through binding of the substrate,
phosphoenolpyruvate, and one or more allosteric effectors.
Like other allosteric enzymes, PK has a high substrate
affinity R state and a low...; Region: Pyruvate_Kinase;
cl09155"
/db_xref="CDD:208991"
misc_feature 491179..492561
/locus_tag="PM3016_418"
/note="pyruvate kinase; Provisional; Region: PRK05826"
/db_xref="CDD:180277"
misc_feature order(491185..491190,491356..491358,491362..491364,
491386..491397,491644..491649,491665..491667,
491674..491688,491731..491733,491755..491757,
491776..491778,491812..491814,491920..491922,
491974..491979,491989..491991,492085..492087,
492091..492093,492178..492180,492184..492189,
492343..492345,492349..492351,492355..492357,
492388..492390,492397..492402,492406..492408,
492412..492420)
/locus_tag="PM3016_418"
/note="domain interfaces; other site"
/db_xref="CDD:29370"
misc_feature order(491272..491274,491278..491280,491374..491376,
491749..491751,491830..491832,491836..491838,
491908..491910,492004..492006)
/locus_tag="PM3016_418"
/note="active site"
/db_xref="CDD:29370"
gene complement(492685..492960)
/locus_tag="PM3016_419"
/db_xref="GeneID:11882411"
CDS complement(492685..492960)
/locus_tag="PM3016_419"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310540.1"
/db_xref="GI:379718409"
/db_xref="GeneID:11882411"
/translation="MANDKSMNPMSGEEVETDGIYTNEWGREEKLKRGDEFPADPVLG
NTEWELTSLPLESQEEEFYKDTTANTKKRSHYDNDFGADPLGKAGKS"
gene 493075..493842
/locus_tag="PM3016_420"
/db_xref="GeneID:11882412"
CDS 493075..493842
/locus_tag="PM3016_420"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310541.1"
/db_xref="GI:379718410"
/db_xref="GeneID:11882412"
/translation="MTEALWGTGVNAAAIVAGGLAGLLLQRMSDGMRRTVMQGIGLAL
IALGVSMALKSDQFLLMAACLTLGGITGELAGVEQGLERLGKLLEQAVNALTRRLRRG
KDTGSQEGRLAAGFVNATLVFCIGAMAVLGPLDSGLRGDHVVLYTKALLDGFLSIIFA
STMGVGVAFSALAVFLYQGVIALAASWIASGLDEVLLGEIIRQVTAVGGVLIVGVGIN
LLELRRIHVANLLPALVFAALAVPVTGWLTAWWAGLG"
misc_feature 493153..493674
/locus_tag="PM3016_420"
/note="Protein of unknown function (DUF554); Region:
DUF554; pfam04474"
/db_xref="CDD:146891"
gene complement(494029..495315)
/locus_tag="PM3016_421"
/db_xref="GeneID:11882413"
CDS complement(494029..495315)
/locus_tag="PM3016_421"
/codon_start=1
/transl_table=11
/product="seryl-tRNA synthetase"
/protein_id="YP_005310542.1"
/db_xref="GI:379718411"
/db_xref="GeneID:11882413"
/translation="MLDIHWIRENQTKVQEAARLKGIPLSVEELLACDDRWRGLLQQV
EELRRIRNRHSQAIPGWLREGRRAEAEDAKREVRRVNGELARLEAELDGAERQRADLL
LRVPNVPSADTPPGRSDADNVETGRWGEPPQFGFEPLSHTALGELHRIIDLPRGVKPA
GSRGYYLRGAGALLHRAVQQLAVDLLLAEGFTLLEVPLALRPEAFRHAGFFPLGEDQV
YRLEGEDRYLAGTSEIPLLHYYSGETVDVTRPIRLAAVSSCFRSEAGSAGRDTHGLYR
VHQFAKVEQVVLCEADPGAAESLLQEITGHARRLLRLLELPHRTVAVCTGDMSQKTFK
QYDIETWMPSRAAYGETHSSSHLLDFQARRAGIRYKDGDGRLRYCYTLNNTAVASPRI
LIPLLENHQQEDGTVRIPEALRPYMGGLDRLVPPRD"
misc_feature complement(494038..495315)
/locus_tag="PM3016_421"
/note="seryl-tRNA synthetase; Provisional; Region:
PRK05431"
/db_xref="CDD:180077"
misc_feature complement(494989..495315)
/locus_tag="PM3016_421"
/note="Seryl-tRNA synthetase N-terminal domain; Region:
Seryl_tRNA_N; pfam02403"
/db_xref="CDD:202232"
misc_feature complement(494065..494955)
/locus_tag="PM3016_421"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature complement(494731..494745)
/locus_tag="PM3016_421"
/note="motif 1; other site"
/db_xref="CDD:29813"
misc_feature complement(order(494392..494394,494530..494532,
494536..494538,494599..494604,494731..494733,
494737..494742))
/locus_tag="PM3016_421"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29813"
misc_feature complement(order(494143..494145,494152..494157,
494164..494169,494251..494253,494263..494268,
494458..494466,494470..494472,494476..494478,
494533..494535,494617..494619,494623..494625))
/locus_tag="PM3016_421"
/note="active site"
/db_xref="CDD:29813"
misc_feature complement(494530..494538)
/locus_tag="PM3016_421"
/note="motif 2; other site"
/db_xref="CDD:29813"
misc_feature complement(order(494143..494145,494152..494154))
/locus_tag="PM3016_421"
/note="motif 3; other site"
/db_xref="CDD:29813"
gene 495807..497552
/locus_tag="PM3016_422"
/db_xref="GeneID:11882414"
CDS 495807..497552
/locus_tag="PM3016_422"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein/permease"
/protein_id="YP_005310543.1"
/db_xref="GI:379718412"
/db_xref="GeneID:11882414"
/translation="MTFVNRLAWFFRERWVWYLGAVLLMALVNVLGIVPPRMIGSVID
EIRTGALTGDQLQRHVLLLAGLAVFMYIITYIWITTLFGNSLLLERMLRSRLVSHFMR
MSPSFFHRNSTGELMALATNDIPSIGQTAGYGVMTLVNTIVGTSVVLITMISLISWKL
MLAALIPLPLLTLLISVLGKQTRSRFIAAQAAFGRMNDQALESISGMRVIRSYVQEEH
DLASFDRVTRDVMNLNIRVAAIQALFHPAISLIVGMSFIIGIGYGANLVFHHEITLGQ
LVSFNIYLGMLIWPMIAFGEFINVLQRGTASVDRVTASFAQTPEVQDPEEPVKVDRPE
SIELRDLTFRYPGASQDSLRGVSVRLESGQTLGLVGRTGSGKSTLLKQLLRYYPVEPG
TVLFSGVGIENLSVSEIRSWIGYVPQEHLLLSKSVRDNIALARPDASGEEIARAIAMA
SFTADIEMLPQGLETIVGENGVMLSGGQKQRISIARALLADPEILILDDSLSAVDART
ESAILEALRAERAGRTTLIATHRLSAVMHADRILVLEDGRISEDGTHEELMRRGGWYK
EQFERQQLEANLLET"
misc_feature 495858..496679
/locus_tag="PM3016_422"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:201380"
misc_feature 495870..497540
/locus_tag="PM3016_422"
/note="putative multidrug transporter membrane\ATP-binding
components; Provisional; Region: PRK10789"
/db_xref="CDD:182732"
misc_feature 496812..497522
/locus_tag="PM3016_422"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature 496914..496937
/locus_tag="PM3016_422"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature order(496923..496928,496932..496940,497058..497060,
497298..497303,497394..497396)
/locus_tag="PM3016_422"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature 497049..497060
/locus_tag="PM3016_422"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature 497226..497255
/locus_tag="PM3016_422"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature 497286..497303
/locus_tag="PM3016_422"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature 497310..497321
/locus_tag="PM3016_422"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature 497382..497402
/locus_tag="PM3016_422"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 497583..499706
/locus_tag="PM3016_423"
/db_xref="GeneID:11882415"
CDS 497583..499706
/locus_tag="PM3016_423"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein/permease"
/protein_id="YP_005310544.1"
/db_xref="GI:379718413"
/db_xref="GeneID:11882415"
/translation="MEPQSNAGEARVPVFRRLLAYALLFKYRIAAALLVLCCAVGAEL
AGPFIAKTIIDRHIGGIAQPWYEWNVKDVSLPADTRNVELDGVLYVRKDWLDAGAAPG
SGPAERPALWREARILQLDSGMYLVRGAGEMTGGSWSAAGEGADAPVLTWKAESGETR
QVPARKLTTAETVAFYKYDIPEVIRWLAVFFGLLVLGSALHYIQGFTLQTTALRIIQR
MRMDLMNHIQRMPIRYFDSTPIGQVVSRIANDTEAVRDLFMSFMATFVVSSINIVGIY
IALFLLDYRLALVTLVFMPLFTVVMYVHLKYSKKYISVMRARLSDMNAMLNESINVMP
ILQAFRQEKNRMREFNALNEDRYRANIKQIRLFSLSSRNFTGLVGSLFTAGAIWYFGG
QSLQSAISFGVFYAFIDYTGRFFQPIIGIFDQLMNAQRAVVSAEKVFGLMDIEGTEVA
RADEVPRPQGHVKFDNVTFAYKEGEPVLRGITFEAKKGETVALVGHTGSGKSSIMNLL
LGFYEPSDGRILIDGQEIRSISKQALRKHMGIVLQDPFLFTGDIKFNVSLYNERIGPQ
QVRKALADVGAAGFVEALPGGYDERVVERGSTLSAGQRQLISFARALAFDPAILILDE
ATASIDSETEGLIQEALRVVSAGRTTFVIAHRLSTIREADQILVLHRGEIVERGNHET
LMELKGRYYRMYQLQSGGTVQTTTA"
misc_feature 498114..499682
/locus_tag="PM3016_423"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature 498132..498836
/locus_tag="PM3016_423"
/note="ABC transporter transmembrane region; Region:
ABC_membrane; pfam00664"
/db_xref="CDD:201380"
misc_feature 498960..499646
/locus_tag="PM3016_423"
/note="Glucan exporter ATP-binding protein. In A.
tumefaciens cyclic beta-1, 2-glucan must be transported
into the periplasmic space to exert its action as a
virluence factor. This subfamily belongs to the MRP-like
family and is involved in drug, peptide, and...; Region:
ABCC_Glucan_exporter_like; cd03254"
/db_xref="CDD:73013"
misc_feature 499065..499088
/locus_tag="PM3016_423"
/note="Walker A/P-loop; other site"
/db_xref="CDD:73013"
misc_feature order(499074..499079,499083..499091,499209..499211,
499449..499454,499545..499547)
/locus_tag="PM3016_423"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:73013"
misc_feature 499200..499211
/locus_tag="PM3016_423"
/note="Q-loop/lid; other site"
/db_xref="CDD:73013"
misc_feature 499377..499406
/locus_tag="PM3016_423"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:73013"
misc_feature 499437..499454
/locus_tag="PM3016_423"
/note="Walker B; other site"
/db_xref="CDD:73013"
misc_feature 499461..499472
/locus_tag="PM3016_423"
/note="D-loop; other site"
/db_xref="CDD:73013"
misc_feature 499533..499553
/locus_tag="PM3016_423"
/note="H-loop/switch region; other site"
/db_xref="CDD:73013"
gene complement(499842..500522)
/locus_tag="PM3016_424"
/db_xref="GeneID:11882416"
CDS complement(499842..500522)
/locus_tag="PM3016_424"
/codon_start=1
/transl_table=11
/product="thiamine pyrophosphokinase"
/protein_id="YP_005310545.1"
/db_xref="GI:379718414"
/db_xref="GeneID:11882416"
/translation="MMSAAARYVIFSGGTLGSWALRLLQPGDKLIGADRGALFLAEHG
LRPDIALGDFDSVTAMELERVRDSSARFLTCDPVMKDLTDTEMAFNWAHEQGAREIVM
AGVLGSRWDHSLANVHLLRRGLLAGVPCRIADEYNELQLIGAGTPLKLQKSPHTHVSL
LPLTLDVHGITLEGFQYPLHEASLTIGQSLGISNVLVDEAGTVQVREGLLLVIRSRDP
EPEAPSLL"
misc_feature complement(499878..500501)
/locus_tag="PM3016_424"
/note="Thiamine pyrophosphokinase; Region: TPK; cd07995"
/db_xref="CDD:153431"
misc_feature complement(499884..500498)
/locus_tag="PM3016_424"
/note="thiamine pyrophosphokinase; Region: thi_PPkinase;
TIGR01378"
/db_xref="CDD:188135"
misc_feature complement(order(499941..499952,499986..499988,
499992..499994,500175..500177,500187..500189,
500196..500204,500208..500210,500268..500285,
500355..500360,500364..500366,500418..500426,
500481..500489))
/locus_tag="PM3016_424"
/note="active site"
/db_xref="CDD:153431"
misc_feature complement(order(499884..499886,499944..499949,
499953..499955,500031..500036,500040..500042,
500046..500048,500052..500054,500106..500108,
500112..500114,500169..500174,500178..500201,
500205..500207,500265..500267,500277..500285,
500397..500399,500406..500408,500418..500420))
/locus_tag="PM3016_424"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:153431"
misc_feature complement(order(499941..499952,499986..499988,
499992..499994,500274..500285,500364..500366))
/locus_tag="PM3016_424"
/note="thiamine binding site [chemical binding]; other
site"
/db_xref="CDD:153431"
gene 500733..501707
/locus_tag="PM3016_425"
/db_xref="GeneID:11882417"
CDS 500733..501707
/locus_tag="PM3016_425"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310546.1"
/db_xref="GI:379718415"
/db_xref="GeneID:11882417"
/translation="MKINGRYENMDGIRLRKKLPFIQKWRKERKKIKLKDWSYTVPQC
GEKQIEFLKSNHTEPTMTWIGHSSFLLQMEGKNLLTDPVWAQRMGLEKRLAPPGLMPS
DLPRIDAVLLSHSHYDHMDMPSLRTVHQRNPGVQMLVPVGLGKKLKSSGFQKVTEVNW
WDTVRLDGLELHFVPAQHWTRRTLFDTNASHWGGWVLRPVTHHGERLAVYFVGDSAYF
GGFKTIGERFRIGWALMPIGAYDPEWYTGKQHVNPEEAVQAFIDCGADVCVPMHYGTF
RLADDTPREALDRLHAAWERHGLAPERLRILTFGETVRPLAETVGARG"
misc_feature 500892..501671
/locus_tag="PM3016_425"
/note="Predicted Zn-dependent hydrolases of the
beta-lactamase fold [General function prediction only];
Region: COG2220"
/db_xref="CDD:32402"
gene complement(501718..502911)
/locus_tag="PM3016_426"
/db_xref="GeneID:11882418"
CDS complement(501718..502911)
/locus_tag="PM3016_426"
/codon_start=1
/transl_table=11
/product="rhodopsin-like GPCR superfamily protein"
/protein_id="YP_005310547.1"
/db_xref="GI:379718416"
/db_xref="GeneID:11882418"
/translation="MPIVSIEPTPSPNTMKINMSESLPSGVRETYTREQAAEAPTPEL
QRLLSIEGVKAFYRAADFIAVDRMPKGDWGRILAEVREVLGVTESAHPQGSSHPAAEG
PDAGNGEGTTADASFGEVHVFLQHFRGIPLQVRVSSGDEEQRAALPSRFSDTAVRAAS
ASPNLIKERTLEEWDTRYGSLQEVLEDVVQELDAAYSDAQLEELAAQAAAGAGTGDAQ
QRAEKTRRELSYAEAEALLRSPEWKERYAALRRIQPSAETLPLLLIALDDEQAAVRRL
ASVYLGDLKDPVVLPHLYRALQDPSPSVRRTAGDTLSDLGDPAAQEAMIAALSDPNKL
VRWRAARFLYELGDETALPALKAAEDEPEFEVRLQIRMALERIEGGEEAAGSVWQQMS
RRDRS"
misc_feature complement(502657..502902)
/locus_tag="PM3016_426"
/note="Scaffold protein Nfu/NifU N terminal; Region:
Nfu_N; smart00932"
/db_xref="CDD:198000"
misc_feature complement(502321..502539)
/locus_tag="PM3016_426"
/note="Virulence factor; Region: Virulence_fact;
pfam13769"
/db_xref="CDD:205942"
misc_feature complement(501988..502212)
/locus_tag="PM3016_426"
/note="HEAT repeats; Region: HEAT_2; pfam13646"
/db_xref="CDD:205823"
misc_feature complement(501967..502047)
/locus_tag="PM3016_426"
/note="HEAT repeat; Region: HEAT; pfam02985"
/db_xref="CDD:202500"
misc_feature complement(501790..502044)
/locus_tag="PM3016_426"
/note="HEAT repeats; Region: HEAT_2; pfam13646"
/db_xref="CDD:205823"
misc_feature complement(501838..501912)
/locus_tag="PM3016_426"
/note="E-Z type HEAT repeats; Region: EZ_HEAT; smart00567"
/db_xref="CDD:128837"
gene complement(502932..503447)
/locus_tag="PM3016_427"
/db_xref="GeneID:11882419"
CDS complement(502932..503447)
/locus_tag="PM3016_427"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310548.1"
/db_xref="GI:379718417"
/db_xref="GeneID:11882419"
/translation="MTLAKPEQTEYNAFYAGYIAQVPEGDVTAHLKEQLQKTAGLVAG
LTEAQALHRYAEDKWSIKEVLGHIADTERVMSYRLLRVARGDTTPLPGFDQDLFIRGT
AFDEWPLQRLADELAVVRQATLSLFAGLSPADWLREGSASGYPITARALAYIIAGHEL
HHLRIIQERYI"
misc_feature complement(502950..503360)
/locus_tag="PM3016_427"
/note="DinB superfamily; Region: DinB_2; pfam12867"
/db_xref="CDD:205116"
misc_feature complement(502959..503357)
/locus_tag="PM3016_427"
/note="Mycothiol maleylpyruvate isomerase N-terminal
domain; Region: MDMPI_N; pfam11716"
/db_xref="CDD:204720"
gene complement(503562..504152)
/locus_tag="PM3016_428"
/db_xref="GeneID:11882420"
CDS complement(503562..504152)
/locus_tag="PM3016_428"
/codon_start=1
/transl_table=11
/product="guanylate kinase"
/protein_id="YP_005310549.1"
/db_xref="GI:379718418"
/db_xref="GeneID:11882420"
/translation="MYELKDKEIIFVFTGPNGAGRRTVAQMSGSTLGVKQVISYTTRP
PRSSEVDGQDYHFVSREEFKAAEEKQEFIEVIEIDGNCYGIKEADVAAQLQKFGAVYL
VLNRFGAEALKKVYGDKVVRIFIYADRETVLKREQERGDTPELIERYMSHYEEEMAYK
DSCEHVFENLDLAHTVFDLTKALDDTYLHRNLLDLD"
misc_feature complement(503598..504125)
/locus_tag="PM3016_428"
/note="Guanylate kinase; Region: Guanylate_kin; pfam00625"
/db_xref="CDD:201353"
misc_feature complement(503604..504125)
/locus_tag="PM3016_428"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(order(504084..504095,504108..504110))
/locus_tag="PM3016_428"
/note="active site"
/db_xref="CDD:73295"
gene complement(504455..506191)
/locus_tag="PM3016_429"
/db_xref="GeneID:11882421"
CDS complement(504455..506191)
/locus_tag="PM3016_429"
/codon_start=1
/transl_table=11
/product="DEAD/DEAH box helicase"
/protein_id="YP_005310550.1"
/db_xref="GI:379718419"
/db_xref="GeneID:11882421"
/translation="MKKNEFQALGISQELAEALHKHGYNEPTPIQREAIPSVLGGHDV
IAQAQTGTGKTLAFVLPILESIDPNRSHVQALIVTPTRELAIQITEEVARWAPLKGIR
VLSAYGGQDVERQIRKLEGAIHIIVATPGRLLDHLRRETVQLFKLSTLVLDEADQMLH
MGFLPEVVEIISATPTRRQTLLFSATMPERVRQLAKEYMKPPVEIEVKAKRVTLDEIE
QIVVQTTDRGKLDALCKAMEEDPPFLGMIFCRTKLRATKLRDELDERGYAVDELHGDL
TQAKREQVMKRFRDAKIQFLVATDIAARGLDVEGITHVYNYDIPHDAESYIHRIGRTG
RAGMTGKAITFTAPRDAFYLEAIEKGIKMQLVKRPGRGGAEARTDERSERGGRQGGRR
GEARTAGGRGARGAAGRGAAAPGGRGRAAAPAPRGGESAERWGAAASGGRDSAARGAG
RGTAGGRGGAGARGEGALPWSGTQGGTRDSAAPRGGRGAAAAGTRGGGGGGAPGRGDG
AERWSSGPRPGGERGARTAGARSGGAGARGGSAGARGRSGGGGAPERGGAGRGPKPAG
RGGAAGGRRRGR"
misc_feature complement(505085..506176)
/locus_tag="PM3016_429"
/note="helicase 45; Provisional; Region: PTZ00424"
/db_xref="CDD:185609"
misc_feature complement(505574..506176)
/locus_tag="PM3016_429"
/note="DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing, ribosome
biogenesis and RNA degradation. The name derives from the
sequence of the Walker B motif; Region: DEADc; cd00268"
/db_xref="CDD:28928"
misc_feature complement(506027..506041)
/locus_tag="PM3016_429"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28928"
misc_feature complement(505724..505735)
/locus_tag="PM3016_429"
/note="Mg++ binding site [ion binding]; other site"
/db_xref="CDD:28928"
misc_feature complement(505634..505642)
/locus_tag="PM3016_429"
/note="motif III; other site"
/db_xref="CDD:28928"
misc_feature complement(505157..505546)
/locus_tag="PM3016_429"
/note="Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may...; Region:
HELICc; cd00079"
/db_xref="CDD:28960"
misc_feature complement(order(505289..505297,505370..505375,
505433..505444))
/locus_tag="PM3016_429"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature complement(order(505187..505189,505196..505198,
505208..505210,505271..505273))
/locus_tag="PM3016_429"
/note="ATP-binding site [chemical binding]; other site"
/db_xref="CDD:28960"
gene complement(506423..507136)
/locus_tag="PM3016_430"
/db_xref="GeneID:11882422"
CDS complement(506423..507136)
/locus_tag="PM3016_430"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310551.1"
/db_xref="GI:379718420"
/db_xref="GeneID:11882422"
/translation="MARALRLVGLISLLFTFAVAAGCYSWYDYNSASNYGSKRDLPRQ
DTSRAYQTQQQYAPVSHKVTKLEMNQNLSDQVAAMYGVNSAIVLVGDNVAYTAITMDS
TASGTHGGDKMALDSNKDGRARGENPAGDFQSLHVDPTQLIDGVSGAQTEPHHEHISH
LFKQKIAEKIRSLEPTIQDVYISANPNIIDQFTKLAIESWHGRSLSPYIPEFTRTMER
TFGTDPTIPNQAEANGREY"
misc_feature complement(506477..>507010)
/locus_tag="PM3016_430"
/note="Sporulation lipoprotein YhcN/YlaJ
(Spore_YhcN_YlaJ); Region: Spore_YhcN_YlaJ; pfam09580"
/db_xref="CDD:150294"
gene 507501..508544
/locus_tag="PM3016_431"
/db_xref="GeneID:11882423"
CDS 507501..508544
/locus_tag="PM3016_431"
/codon_start=1
/transl_table=11
/product="cytochrome caa3-type oxidase II"
/protein_id="YP_005310552.1"
/db_xref="GI:379718421"
/db_xref="GeneID:11882423"
/translation="MIRWQNLWRFIPLFGLMMLLLTGCGDETISALRPRGPVARDQLF
LMKLSFGIMLLVVVVVFVIYLYVLVRFRKKKGDKDIIPKQVEGSHTLEIIWTVVPIIL
LLILAVPTVKYTFQLLEDHRDNKDALPVKVTAHAFWWQFEYPTLGISTAQDLVIPTGK
KIAFELTASDVKHSFWVPSLGGKMDTNPGLTNVYYLQADEIDTFKGKCAELCGASHSL
MDFKVKSLDAAAFDQWVADMKTPSTVPADAKAGETLFKDNCLSCHAVNAQGLGAGPNL
NGFASRELVAGILPHNEQSLRDWIKDPQSIKPGAKMPAFGENPLEPIPGSKPLQEQQI
NDIIKYLNTLTVK"
misc_feature 507537..508226
/locus_tag="PM3016_431"
/note="Heme/copper-type cytochrome/quinol oxidases,
subunit 2 [Energy production and conversion]; Region:
CyoA; COG1622"
/db_xref="CDD:31809"
misc_feature 507888..508175
/locus_tag="PM3016_431"
/note="Cytochrome C oxidase subunit II, periplasmic
domain; Region: COX2; cl11412"
/db_xref="CDD:209309"
misc_feature 508182..508532
/locus_tag="PM3016_431"
/note="Cytochrome c, mono- and diheme variants [Energy
production and conversion]; Region: CccA; COG2010"
/db_xref="CDD:32193"
misc_feature 508248..508532
/locus_tag="PM3016_431"
/note="Cytochrome c; Region: Cytochrom_C; pfam00034"
/db_xref="CDD:200944"
gene 508577..510433
/locus_tag="PM3016_432"
/db_xref="GeneID:11882424"
CDS 508577..510433
/locus_tag="PM3016_432"
/codon_start=1
/transl_table=11
/product="protein CtaD"
/protein_id="YP_005310553.1"
/db_xref="GI:379718422"
/db_xref="GeneID:11882424"
/translation="MAHAHTVKRHTGLMDWLTTVDHKKIGILYLLAGGIFFLMGGLEA
ILIRIQLLYPDQKIFIGDTFNALTTMHGTTMIFLAAMPVIFAFMNAIVPLQIGARDVA
FPFVNALGFWLFFFGGLLLNTSWIIGSVPAAGWTAYPPLSNLTHGEAGTFQGGMDFYV
LGLQIAGLGTLIGGINFLVTIINMRAPGMTYMRMPMFTWTAFITSLLILFAFPAITVG
LVELMFDRIFGTGFFDVSKGGNPVLWEHIFWIFGHPEVYILILPAFGIISDIVSTFSR
KRLFGYSSMVFATALIGFLGFMVWAHHMFTTGIGPVGDAIFGVATMAIAVPTGVKIFN
WLFTLWGGQIRFTTANVFATAFIPTFVMGGVTGVMLAVPAADFQYHDTYFVVAHFHYV
IVGGLVLGLFAASYYWWPKMFGRLLNETLGKIHFWTFFIGFHMTFFPQHFLGLMGMPR
RVFTYQPGVGLETGNYISTLGAFLMGIGTIVFFINIIATASKPANAPADPWDGRTLEW
AIPSPPPEYNFKQTPLVRGFDAFWKEKMAGNKEMTPAEPVGSIHMPSPSILPFVMSVG
LFISGYGFMYHNYLLSIGGLIITFICMFLRSVYDDAGFHIEPEELNDKGVKA"
misc_feature 508598..510295
/locus_tag="PM3016_432"
/note="Heme/copper-type cytochrome/quinol oxidases,
subunit 1 [Energy production and conversion]; Region:
CyoB; COG0843"
/db_xref="CDD:31185"
misc_feature 508622..510133
/locus_tag="PM3016_432"
/note="Ubiquinol oxidase subunit I. Ubiquinol oxidase,
the terminal oxidase in the respiratory chains of aerobic
bacteria, is a multi-chain transmembrane protein located
in the cell membrane. It catalyzes the reduction of O2
and simultaneously pumps protons...; Region:
Ubiquinol_Oxidase_I; cd01662"
/db_xref="CDD:29933"
misc_feature order(508661..508663,508844..508846,508874..508876,
508895..508897,508904..508906,509081..509086,
509102..509104,509114..509116)
/locus_tag="PM3016_432"
/note="D-pathway; other site"
/db_xref="CDD:29933"
misc_feature order(508691..508693,508703..508705,508712..508717,
508763..508765,508772..508780)
/locus_tag="PM3016_432"
/note="Putative ubiquinol binding site [chemical binding];
other site"
/db_xref="CDD:29933"
misc_feature order(508787..508789,509744..509746,509756..509758,
509882..509884,509999..510001)
/locus_tag="PM3016_432"
/note="Low-spin heme (heme b) binding site [chemical
binding]; other site"
/db_xref="CDD:29933"
misc_feature order(509294..509296,509309..509314,509702..509704,
509714..509719,509924..509926)
/locus_tag="PM3016_432"
/note="Putative water exit pathway; other site"
/db_xref="CDD:29933"
misc_feature order(509333..509335,509480..509485,509738..509740)
/locus_tag="PM3016_432"
/note="Binuclear center (heme o3/CuB) [ion binding]; other
site"
/db_xref="CDD:29933"
misc_feature order(509333..509335,509345..509347,509378..509380,
509480..509485,509558..509560,509567..509569)
/locus_tag="PM3016_432"
/note="K-pathway; other site"
/db_xref="CDD:29933"
misc_feature order(509483..509485,509714..509719,509924..509929)
/locus_tag="PM3016_432"
/note="Putative proton exit pathway; other site"
/db_xref="CDD:29933"
gene 510430..511053
/locus_tag="PM3016_433"
/db_xref="GeneID:11882425"
CDS 510430..511053
/locus_tag="PM3016_433"
/codon_start=1
/transl_table=11
/product="protein CtaE"
/protein_id="YP_005310554.1"
/db_xref="GI:379718423"
/db_xref="GeneID:11882425"
/translation="MSAAHHEVGGALPPHAETATLEGKNKVLGFWLFLGGECVLFGTL
FASFIALRNQVPDGPTGQHLFALDLVALSTFILLTSSLTSVFGTMALHRGDLKKLQLW
MAITVLLGLSFLGLEIYEFVHYVHEGHTFTKSAFSSSFYTLVGFHGAHVAFGVLWIAL
LIIQSFKKGLTVVTAPKFYVAGLYWHFIDVVWVFIFTVVYLMGKVGP"
misc_feature 510487..511038
/locus_tag="PM3016_433"
/note="Ubiquinol oxidase subunit III subfamily. Ubiquinol
oxidase, the terminal oxidase in the respiratory chains of
aerobic bacteria, is a multi-chain transmembrane protein
located in the cell membrane. It catalyzes the reduction
of O2 and simultaneously...; Region:
Ubiquinol_oxidase_III; cd02863"
/db_xref="CDD:29487"
misc_feature order(510499..510504,510514..510516,510523..510525,
510544..510549,510556..510561,510568..510570)
/locus_tag="PM3016_433"
/note="Subunit I/III interface [polypeptide binding];
other site"
/db_xref="CDD:29487"
misc_feature order(510520..510522,510544..510546,510655..510657,
510664..510666,510676..510681,510964..510966,
510985..510987)
/locus_tag="PM3016_433"
/note="Subunit III/IV interface [polypeptide binding];
other site"
/db_xref="CDD:29487"
gene 511054..511368
/locus_tag="PM3016_434"
/db_xref="GeneID:11882426"
CDS 511054..511368
/locus_tag="PM3016_434"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310555.1"
/db_xref="GI:379718424"
/db_xref="GeneID:11882426"
/translation="MSSQHHTSAPTERHRLEGPRNHYLSYLISIILTMIAFAVVLYGG
LDRSFIIFFIVGIGVVQVIFQLAYWMHMKDRGHMFPIVGLAFGTFVALSAVAAAVYWV
WW"
misc_feature <511111..511320
/locus_tag="PM3016_434"
/note="Prokaryotic Cytochrome C oxidase subunit IV;
Region: COX4_pro; cl01204"
/db_xref="CDD:207340"
gene 511486..512361
/locus_tag="PM3016_435"
/db_xref="GeneID:11882427"
CDS 511486..512361
/locus_tag="PM3016_435"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310556.1"
/db_xref="GI:379718425"
/db_xref="GeneID:11882427"
/translation="MPANVSHAGHGAESTFAALWSPGLLLLLTVVGILYTLAVGRWRK
EIPDSEPVPLKQRIWFWTALVLWYAAEGSPLSYYGHHYYFSVHMFQQSILYLIMPPIL
LLGLPAWLLRAAIRTERVKRIVWWLTSPVFALFFFNFIFSMYHIPMVMDWLMARPAAL
SAYKAIFLFSAFQLWFPVFCPLPEYSRMSELKKMGYIFLNGVLLTPACALIIFAGKPM
YEMYAAVPPELLYLPMVDDQQLGGVIMKIVQEIVYGWALWYTFIRWYRRERKQDEEEE
FRESSYLTSSTMNRA"
misc_feature 511531..512280
/locus_tag="PM3016_435"
/note="Cytochrome c oxidase caa3 assembly factor
(Caa3_CtaG); Region: Caa3_CtaG; cl09173"
/db_xref="CDD:195812"
gene 512416..512877
/locus_tag="PM3016_436"
/db_xref="GeneID:11882428"
CDS 512416..512877
/locus_tag="PM3016_436"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310557.1"
/db_xref="GI:379718426"
/db_xref="GeneID:11882428"
/translation="MNVPILPTISTLFIVISAIFVGFGWYQIMRGNRQTHEKLMLWGA
FFALAFFLVYASRTIFSGNTSFGGPEELKLAYHLFLFFHILLATAAAVFGIITLLHAF
NKRFAKHKKLGRWTAVIWLLTAPTGVVVYVLLYVLYPGGATKPMIDAILGT"
misc_feature 512422..512796
/locus_tag="PM3016_436"
/note="Protein of unknown function (DUF420); Region:
DUF420; pfam04238"
/db_xref="CDD:146725"
gene complement(512959..513675)
/locus_tag="PM3016_437"
/db_xref="GeneID:11882429"
CDS complement(512959..513675)
/locus_tag="PM3016_437"
/codon_start=1
/transl_table=11
/product="type 11 methyltransferase"
/protein_id="YP_005310558.1"
/db_xref="GI:379718427"
/db_xref="GeneID:11882429"
/translation="MPDHEHIYRMKAHLYHRLIAAQPDLSNIMEELYPGGDLDILDLG
AGSGRLTLSLLPRARSLSASDLSPAMLEELVRNVPLSCHSRLMTIAADHRNLPLPDHS
FDLIVSGWSLCYLAGSDEPEWEANLKQMMSEIDRLLRPGGTVILFETMGTGYTAPQPP
PFLLEYYNQLERQYEFGHRWIRTDYTFRSPQEAEELTRFFFGDALADEVRQKGLPIVP
ECAGVWWKRKSKESGKVHPA"
misc_feature complement(513238..>513468)
/locus_tag="PM3016_437"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
gene complement(513734..514629)
/locus_tag="PM3016_438"
/note="xylose isomerase domain-containing protein"
/pseudo
/db_xref="GeneID:11882430"
gene complement(514863..515639)
/locus_tag="PM3016_440"
/db_xref="GeneID:11882431"
CDS complement(514863..515639)
/locus_tag="PM3016_440"
/codon_start=1
/transl_table=11
/product="NLP/P60 family protein"
/protein_id="YP_005310559.1"
/db_xref="GI:379718428"
/db_xref="GeneID:11882431"
/translation="MKKQWTMMLLATTITLGSTTFIPEEAQAASAVIVSSVNLRSEPN
TSAASYGYVSTGETVEILSKVNSYWYKVRTSSGKVGYISTSSRYVSTTSTVPVSTSTT
ASSSGTVTYSSTAVSKVIAAGKAYLGTPYEYGSDRSTTYTFDCSDFVRQAFKDALGVT
LPSSSRTQGDYVKSIGKTSTNWHDLKPGDLMFFMSYKGGSASNYPSNKAGQTITHVGI
YLGDGKILHTYSKDSGGVRIDSIAGRHWEHRFIFGGSALR"
misc_feature complement(515394..515528)
/locus_tag="PM3016_440"
/note="Bacterial SH3 domain; Region: SH3_3; pfam08239"
/db_xref="CDD:116824"
misc_feature complement(514890..>515288)
/locus_tag="PM3016_440"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:31134"
misc_feature complement(514887..515258)
/locus_tag="PM3016_440"
/note="NlpC/P60 family; Region: NLPC_P60; pfam00877"
/db_xref="CDD:189752"
gene 515777..516817
/locus_tag="PM3016_441"
/db_xref="GeneID:11882432"
CDS 515777..516817
/locus_tag="PM3016_441"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310560.1"
/db_xref="GI:379718429"
/db_xref="GeneID:11882432"
/translation="METWVLGPLVISQYLLVLFLSAAAGYGVLRLRLRGSGIGRPMGE
SVQTALLLWVLVWKLSILLWEPQSILDDPVSLLYFNGGEKGVWLASIVSGLYILYAAE
RRQLDRILYSDSLLLALLGGYAAYAALILLLDPREFGSRLPSVIVVLAAAALWLRYRP
GGTLQSPLRRAALLVTAFALVSTVTGHLADRTTGTDAVLAEVGVGLKTGQLAPDFELG
TLGGESVKLSSYRGRTVIVNFWATWCPPCRTEMPHMQAYHAAQPEGGPLILAVNATST
EVSEPVVSSWSETWKLTFPVPLDKEGKVTELFGIHSYPTTYVIDKDGIIRYKQAGPMT
FEMLEDAAAKAE"
misc_feature 516416..516769
/locus_tag="PM3016_441"
/note="TlpA-like family; composed of TlpA, ResA, DsbE and
similar proteins. TlpA, ResA and DsbE are bacterial
protein disulfide reductases with important roles in
cytochrome maturation. They are membrane-anchored proteins
with a soluble TRX domain containing a...; Region:
TlpA_like_family; cd02966"
/db_xref="CDD:48515"
misc_feature order(516506..516508,516515..516517)
/locus_tag="PM3016_441"
/note="catalytic residues [active]"
/db_xref="CDD:48515"
gene 517054..518457
/locus_tag="PM3016_442"
/db_xref="GeneID:11882433"
CDS 517054..518457
/locus_tag="PM3016_442"
/codon_start=1
/transl_table=11
/product="NAD-dependent malic enzyme"
/protein_id="YP_005310561.1"
/db_xref="GI:379718430"
/db_xref="GeneID:11882433"
/translation="MAQTSIILRIELDHNHITFGDVAATIGKAGGDITSIDVIRPGKD
SSVRDITVDIAESAEAAVVEALKSHVGIKLINVSDRTFLAHLGGKINIQPTLPIKNRD
DLSRVYTPGVARVCTSIHEDPKKAYSLTIKRNTVAVVTDGTAVLGLGDIGPHAAAPVM
EGKAMLFKQLAGVDAFPICLDTKDTEEIIRTVKSISPIFGGINLEDISSPRCFEIETR
LAEELDIPVFHDDQHGTAVVVVAGLLNALKVVGKKIDSVRIVVNGIGAAGVSICKMLL
AAGVTRLVPVDREGAIVRGGSYEHPMWQWLAEQPQVEAEKGTLKEVLRDADVFIGVSR
GGLLNADDIQTMAPDRIVFAMANPVPEIDPEEALPHVRVLGTGRSDYPNQINNVLVFP
GIFRGALDCRARRINEPMKLAAARAIASVVTESELNEHYIIPSIFNEQVVSKVRRAVI
EAAILTGTARRTPKDFR"
misc_feature 517072..517290
/locus_tag="PM3016_442"
/note="ACT domains are commonly involved in specifically
binding an amino acid or other small ligand leading to
regulation of the enzyme; Region: ACT; cl09141"
/db_xref="CDD:208988"
misc_feature 517312..518451
/locus_tag="PM3016_442"
/note="Malic enzyme [Energy production and conversion];
Region: SfcA; COG0281"
/db_xref="CDD:30629"
misc_feature 517312..517710
/locus_tag="PM3016_442"
/note="Malic enzyme, N-terminal domain; Region: malic;
pfam00390"
/db_xref="CDD:201200"
misc_feature 517807..518412
/locus_tag="PM3016_442"
/note="NAD(P) binding domain of malic enzyme (ME),
subgroup 2; Region: NAD_bind_2_malic_enz; cd05311"
/db_xref="CDD:133453"
misc_feature order(517843..517854,517912..517917,518047..518052,
518062..518064,518116..518124,518182..518184,
518206..518208,518212..518214)
/locus_tag="PM3016_442"
/note="putative NAD(P) binding site [chemical binding];
other site"
/db_xref="CDD:133453"
gene complement(518607..518921)
/locus_tag="PM3016_443"
/db_xref="GeneID:11882434"
CDS complement(518607..518921)
/locus_tag="PM3016_443"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310562.1"
/db_xref="GI:379718431"
/db_xref="GeneID:11882434"
/translation="MEQFSLCPRVERGMKLLSKRWAALIMYQLLSGPQRFCTMESALP
ISGRLLSERLKDLEAEGIVKRDVFPETPVRIEYSLTDKGRALEPVLKGMEQWSQAWVD
PE"
misc_feature complement(518640..518882)
/locus_tag="PM3016_443"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature complement(order(518643..518651,518655..518663,
518667..518672,518739..518741,518829..518831,
518838..518843,518850..518855,518862..518864,
518871..518873,518877..518882))
/locus_tag="PM3016_443"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:28974"
misc_feature complement(order(518691..518699,518712..518714,
518724..518729,518745..518750,518754..518759,
518766..518771,518775..518786,518811..518819,
518856..518864,518874..518879))
/locus_tag="PM3016_443"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature complement(order(518670..518672,518808..518810,
518817..518819))
/locus_tag="PM3016_443"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
gene complement(519009..519839)
/locus_tag="PM3016_444"
/db_xref="GeneID:11882435"
CDS complement(519009..519839)
/locus_tag="PM3016_444"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_005310563.1"
/db_xref="GI:379718432"
/db_xref="GeneID:11882435"
/translation="MKPSITITSSVPSRLLNPASGYLKGYTHTLNPYGGCTFACSYCY
VREMPVGKFRGEAWGSWVHIKLEAAERLERELRLAGRKGPLQIFMSSSTDPYQPVEYR
TGLTRSLLEVMAASDNPAFLLVQTRSPLVTRDLDLLRSLGSRVRVSLTIETDLEPVRR
AFTPSAPPLAARLKALKELVAAGIPAQAAVSPVLPSSPRLADVLASTGVTRLCVDDVF
MGDGSQGKRTQRLGLHKLYEALQLEEWNRPDAYLRVIETLKTRFPEESIRISQEGFLP
"
misc_feature complement(<519198..519773)
/locus_tag="PM3016_444"
/note="DNA repair photolyase [DNA replication,
recombination, and repair]; Region: SplB; COG1533"
/db_xref="CDD:31722"
gene complement(519939..520487)
/locus_tag="PM3016_445"
/db_xref="GeneID:11882436"
CDS complement(519939..520487)
/locus_tag="PM3016_445"
/codon_start=1
/transl_table=11
/product="MOSC domain-containing protein"
/protein_id="YP_005310564.1"
/db_xref="GI:379718433"
/db_xref="GeneID:11882436"
/translation="MARTCYEARVAAVLAARQPKSFVTSREPELAIELGGIPGDRHYG
LFRKADSRQSFYPRGTLIANRRQISIVSAEECDLIAGAMGIPEVRPEWLGANLLLEGY
PQLTSLPVGSRLLFPEACGLIGEGENPPCKGPGKEIAEALQLPDLAGRFVKAAKHRRG
IVCSVEREGRIREGDTVRIFLP"
misc_feature complement(519951..520301)
/locus_tag="PM3016_445"
/note="MOSC domain; Region: MOSC; pfam03473"
/db_xref="CDD:202655"
gene complement(520638..521600)
/locus_tag="PM3016_446"
/db_xref="GeneID:11882437"
CDS complement(520638..521600)
/locus_tag="PM3016_446"
/codon_start=1
/transl_table=11
/product="pyruvate carboxyltransferase"
/protein_id="YP_005310565.1"
/db_xref="GI:379718434"
/db_xref="GeneID:11882437"
/translation="MTRDHHKILDCTIRDGGLVNNWDFSVQFVKDMYYGLSEAGVEYM
EIGYKNSAKLLKGAEAGPWRFLNEDFLKEVLPQKTDTKLSALVDIGRVDEKDILPREQ
SLLDLIRVACYIKDVDKALDLVQKFHDFGYETTINIMALSHVMENDLNEAFEEIAKSP
VDVVYIVDSYGSMDYKDVDYLVSKFQRLLPNKKLGLHMHNNQQLAFSNTIMGAAKGVE
FLDTSVYGMGRAAGNCPTELLVSHLKNPKYDLRPVLGIIEKHMVSMREKWEWGYIIPY
MIAGVLNDHPRAAMAARAGEDKDKYTEFYDKLTSPEVMPAGAAD"
misc_feature complement(520788..521579)
/locus_tag="PM3016_446"
/note="4-hydroxy-2-oxovalerate aldolase-like, N-terminal
catalytic TIM barrel domain; Region: DRE_TIM_HOA_like;
cd07944"
/db_xref="CDD:163682"
misc_feature complement(order(521004..521006,521010..521012,
521100..521102,521184..521186,521337..521339,
521343..521345,521466..521468,521547..521549,
521556..521561))
/locus_tag="PM3016_446"
/note="active site"
/db_xref="CDD:163682"
misc_feature complement(order(521466..521468,521556..521561))
/locus_tag="PM3016_446"
/note="catalytic residues [active]"
/db_xref="CDD:163682"
misc_feature complement(order(521004..521006,521010..521012,
521100..521102,521556..521558))
/locus_tag="PM3016_446"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163682"
gene 521953..522447
/locus_tag="PM3016_447"
/db_xref="GeneID:11882438"
CDS 521953..522447
/locus_tag="PM3016_447"
/codon_start=1
/transl_table=11
/product="MutT/Nudix family hydrolase"
/protein_id="YP_005310566.1"
/db_xref="GI:379718435"
/db_xref="GeneID:11882438"
/translation="MLEYNVAFLRRGDLLLMLNRSKPPLLGLWNGVGGKLEPGESPLE
SVLREIGEETGLALKEDAIRFGGIVTWEIDGRMAGGMYAYTADAGSGDLGGLPRETAD
GILAWKPAAWVLNPENRGVAGHVQYFLPPMLEKSPAAEYRCLFREGQLLTCECLPLDL
SLYT"
misc_feature 521959..522357
/locus_tag="PM3016_447"
/note="MutT homolog-1 (MTH1) is a member of the Nudix
hydrolase superfamily. MTH1, the mammalian counterpart of
MutT, hydrolyzes oxidized purine nucleoside triphosphates,
such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates,
thereby preventing the...; Region: MTH1; cd03427"
/db_xref="CDD:72885"
misc_feature order(521962..521964,521968..521970,522040..522042,
522055..522057,522094..522099,522106..522111,
522163..522165,522187..522189,522193..522195,
522253..522258,522304..522306,522310..522312)
/locus_tag="PM3016_447"
/note="putative active site [active]"
/db_xref="CDD:72885"
misc_feature order(521962..521964,521968..521970,522040..522042,
522055..522057,522094..522099,522106..522111,
522163..522165,522187..522189,522193..522195,
522304..522306,522310..522312)
/locus_tag="PM3016_447"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:72885"
misc_feature 522052..522120
/locus_tag="PM3016_447"
/note="nudix motif; other site"
/db_xref="CDD:72885"
misc_feature 522253..522258
/locus_tag="PM3016_447"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:72885"
gene 522570..523958
/locus_tag="PM3016_448"
/db_xref="GeneID:11882439"
CDS 522570..523958
/locus_tag="PM3016_448"
/codon_start=1
/transl_table=11
/product="metallophosphoesterase"
/protein_id="YP_005310567.1"
/db_xref="GI:379718436"
/db_xref="GeneID:11882439"
/translation="MRRIASLTLTSLLMLSLSPLLAHGAEPAKPKGSASPAVSVLTDT
YGGVRMEVQPGEVKKETPKDGRPENKVILDRTKLKEAFGRLKDQAAGQPAVTAVIPST
ESTVKIHIADAVLDEARQTVPGAYLLLQLPEVSYKLPVGFSAKAAEELKVPPANVTVI
VTIKSMPDSALGTARERLKAAGASEILPAPVDFKITGQRTNGQTVDLTRVGSAYVQRV
LTLPASVDPSTVTAVTYANGEISFVPALFNYNQATVLSPGGGWFTIVSSSKEFTDTAG
HWAEADIRLLASKLLVKGTSASEFSPDKPVTRAEFAAMLTRALGLPDNRGASAKYSDV
GKYTWFAGPVGAASAAGLVDGYDDGTFKPNARISREQMAVMLTKARAYGSGLQGLPKT
VDLSAVSIPVFEDGAKIASWASEPVTEVLAVGLMEGVTPEKFAPKENATRAQAVVLLK
RLLVSLKLVNPV"
misc_feature 523380..523505
/locus_tag="PM3016_448"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 523557..523688
/locus_tag="PM3016_448"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 523776..523904
/locus_tag="PM3016_448"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene complement(524051..524365)
/locus_tag="PM3016_449"
/db_xref="GeneID:11882440"
CDS complement(524051..524365)
/locus_tag="PM3016_449"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310568.1"
/db_xref="GI:379718437"
/db_xref="GeneID:11882440"
/translation="MPSPHPDDVQANKWIAAASYLLFFLPLLAARDSRYAMYHANQGL
LLLLTAIGANLVLGLIPLLGLLLLPVANLALLVLMLIGILNAINGLTKPLPLIGGATL
LR"
gene 524437..524982
/locus_tag="PM3016_450"
/db_xref="GeneID:11882441"
CDS 524437..524982
/locus_tag="PM3016_450"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310569.1"
/db_xref="GI:379718438"
/db_xref="GeneID:11882441"
/translation="MVYTILCQRKARYVCRTGISFLPQGKAIWETIPDQVSGKEAMGM
NSAPITFEFESRKAALLAMDTMEELGYRTALHDEPQKPLLHVIVDKGDITSALEIAEA
HGGRLIETADFPNEPAVFAMAYDPDGGIIIPAHLVGPDEVDISAAAYGGGPGSAYTNE
DDDTFDPSREDYNGFDAGIHL"
gene 525286..526182
/locus_tag="PM3016_451"
/db_xref="GeneID:11882442"
CDS 525286..526182
/locus_tag="PM3016_451"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310570.1"
/db_xref="GI:379718439"
/db_xref="GeneID:11882442"
/translation="METYDSLKEGERGAWVSIAAYILLSIFKISMGYMTGSEALTADG
INNTTDIIVSVAVLAGLRISRKPPDEDHRYGHMRAETIASLVASFIMALAGLQVMIQA
GRSFLNGQHEAPDLLAAWIALGCAAIMWGVYTYNRRLAKRINNQSLMAAAYDNRSDAL
VSVGAAAGIIGARFGFPVLDAVAALAVGVVILKTAWEVFSDASHALTDGFDDQKLEVF
QQTVESTPGVKRIKDIRARVHGSHVLLDVVVEVSAELSVGESHDISDEIERRMADEHH
ISNVHVHIEPYSDSERERQQMT"
misc_feature 525286..526173
/locus_tag="PM3016_451"
/note="Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism]; Region: MMT1; COG0053"
/db_xref="CDD:30402"
misc_feature 525352..526158
/locus_tag="PM3016_451"
/note="Cation efflux family; Region: Cation_efflux;
pfam01545"
/db_xref="CDD:201849"
gene 526449..532313
/locus_tag="PM3016_452"
/db_xref="GeneID:11882443"
CDS 526449..532313
/locus_tag="PM3016_452"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310571.1"
/db_xref="GI:379718440"
/db_xref="GeneID:11882443"
/translation="MTNSTKSTQVDMAARMYRNFRQSTAMVSKTVVTCMLGTTLLTAA
LGAADSAYAALPAEGAALPLSGAVYGSGGQGAASPLTDLDGSYAKKEILALAEAGVVS
GYEDGTFAPTQGMTRAEMAKIIAKAMGLAEDPSYAEKFTDIAADSWYKGYVGALLKAG
ITQGTSETAFSPDSSVTREELVVFFVRAFGLEKAAEAYDGPSVFTDQASISPWALPHV
HLAYGMGFIGGVASSDGTLRFDPRVQAERQALARLAYEYIGKKQDYVAKAKELVAAGQ
QPGKDAPKAEDPAPVSTASAGGSAAAGGGGGGGGSSSSKKTERALEQALASLAIGFAS
GDSEQNVRNPIALPATVVYKENGSKDKTVPVSWTSSNQDIVGADGMVNRPAAGQPDVQ
VVLTASVQKGSSKASRNYELTVKALTSPVPDPDPQPDPDPKPDPQPTGLIRSISGVHT
EETRAAEGLQLVEFQVELSKQVEEASEIPHTIMLGDDTFQVLVWQEGEQRQQIPISFL
DVYNREGTSVIVRLHEENNVGPAVQYGQKYTVELRAGNGEVAGSKFFQIGLQPTEVKV
EDHDETPGVDGRDFSVTWSPSAWEEAELQQVYILPVETELDRSKHRAVAEFRDRTSHS
WTGSVNTADSAGQALALKEYAIVVVSSTADAESSEAVTFVPDGIITAQPAVETKVYNN
GGELLGRGEPNTFVYLKDNRGRLVGDAKADGSGRFKILLPTFFMGEEGAVLTVSAKSA
GKLESTGVSVPVVAGTKSVISGLQAQIYEDGGAIHIPREFRGSVRVSAGDGTVLAEEF
IYDYEYSPFTIMLNQPWQTAKLNAGERIAVRVQEYRKSPSDPVYFEVKPLEGVTNKPV
VTGTVYNALSRIELEVEDYSAAISLRRSNGSLLWHGFRGGYDSLSINGLLLIPGEHIS
LTADEFGKAESEPVILEVMTGERTKLDSVTGIVYEDGGTFTGSFSSDSEVTYRVKKWD
GTFVTAVTNVSGPDTSSANFKGTYTVGEQVFVTARSKGQQASKELALIVQKGSDTKTA
VPVVDNVYGTAYEVSGMAEPNAYVKVTRPDGTIFEGFASIHGYFYIPLNDALAVAGET
LKVTADAPGKLESDIQEITVLNALQTPVPTVTVSVYNGVVSKLHVVSKPNAFVWVIDE
NGSQVAGNMADGNGISDIVLGEYPSGNKLYVKALYYGWEESAPYVVDRGVTTPSSKPS
VTGVVYTDGYLLEGTAGPNSWTQLFSGGTSIGETISDQEGRFELGHNGNDWLYAGEVV
QVTSQEPYRSVSPPVEFVVQPEQGKTEAPTVIGDVYENTNWLSVQTVRGALVILRDNE
GKVISQNYADFEGRADLRFYPWIRQGNTFKLTSDAIGRTVSDAVVVNVIPPPPTTKPY
AVTSAVYVDGGEVRGYTEAYAAVELKRTDGSVIARGSASYDGSFFLRTQPLQLANGEI
LALIAKAWDKSVSEAYSVTVQGIVYGQTAQPSVSGAVYETVGNLRIEAGPRQWVRAYS
ESEGQLFWEWTGDYPYWYRYINLTNQKVGTKVYVYADAFGQTESEPVVYTVQPSPQTA
KPSVIGSVYATSNSITVSLSDYPGDSTYIRIKRADGQLVASNWAYSSTAQLSPWHTLI
EGEILYVTAQDTFKKESDPFLVTVQAAPMTVTPSVYGSVYEDGGVITGTAAKYASVRV
FTGDNSYITTGYADYWGSYRIDLTSYTFNPGAVLWVEAQASGYKPSYRVYLNVLPVAG
QTAAPTVNGTVYQSDSYALSGYAAPYSKITVTREDGASFTAWSGEYGNFWAYYPSSYN
WLHGASELKITADTYGKLVSEPLIVPVVSKKTPAPGVAVSVYGSTYTLSGYMHQLTIL
RISDGYGLDLTSVEVGSFTWDIPAYMIQGNRLMLTGQWNNYSVSDVVYLTLPYNSSAV
GGNVYGGGSSVSGSVYGFSTGGSTASSTSSPAPADAAYQAFAAAAAVLPQRRAA"
misc_feature 526683..526811
/locus_tag="PM3016_452"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 526863..526994
/locus_tag="PM3016_452"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene complement(532409..533605)
/locus_tag="PM3016_453"
/db_xref="GeneID:11882444"
CDS complement(532409..533605)
/locus_tag="PM3016_453"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310572.1"
/db_xref="GI:379718441"
/db_xref="GeneID:11882444"
/translation="MNRISSSVSRSLRSLYVSQFLSAFADNAVFFVILGVLSARGSAN
PEEGMLGVQLGFLLAYVVLAPFVGTFADKNRKSRVLLIGNLLKTAGTLLLFTSFPPAA
AYALVGVGAVVFSPAKYGVLTDITGEDKAQLYRANGNLESYTILAILLGTVAGGWLAS
LAPALGITVCVLLYLASSVLTPLISCREGNPELRYGASAASFFREVRILFAEPKSRFS
LVGTSAFWMTSSVLRITFLIWIAQYLGVQNQLLQSGIIGATGVGIVIGALLTPRLVRI
EKFYRAYLFGFLMLAAILLALLPVHLVLTIILLLLIGILGGLFIIPMNTVLQDQGKNL
VGSGKTIAIQNFSENLFMIGGVGLAKLLIAGGLNVSLTTAGIALVFGALVWYLKGMVP
RLKQAV"
misc_feature complement(532442..533551)
/locus_tag="PM3016_453"
/note="lysophospholipid transporter LplT; Provisional;
Region: PRK11195"
/db_xref="CDD:183032"
gene complement(533611..535767)
/locus_tag="PM3016_454"
/db_xref="GeneID:11882445"
CDS complement(533611..535767)
/locus_tag="PM3016_454"
/codon_start=1
/transl_table=11
/product="AAS bifunctional protein"
/protein_id="YP_005310573.1"
/db_xref="GI:379718442"
/db_xref="GeneID:11882445"
/translation="MPVILWILKWCLTAAFRLKVKGLEKLDFSGPAILMPNHLSLLDA
VLLALYLPKEVTFVVNTRIAARFAPFIRLRRHITVDPLNPYSVRRMVKVVAGGTPLLL
FPEGRITTTGGLMKIYSGVGYIALRTGAALYPIALNGLERSKASYLGRKLRTVWFPAV
SIDVGEPLRIEWDRSQSMRRQKEAAADRIGRALQEQLLRSRLKPEANLFDEVLEAGRR
HGLGAAACEDPSGVLSYRKLLTGAYALSRGLAPLLQGQKTAAVLLPNASAGAVTLLAL
FRLGRTPALLNFSAGRQAVLDACETAEVRTVLTSRTFIEKAGLEAMAADLSSRVRVIY
LEDLKASLGAVVKLGALLDLFLGRKAASGAGLPTVILFTSGSESKPKGVVLSHGNLYA
NVQQARASIDFTSSDSVFNALPLFHSFGLTAGTLLPLLTGMRVYLYPSPLHYKVIPEL
VYDRNATILFGTSTFLAAYGRTAHPYDFHALRYVVAGAEKLKDEVRTLWNDKFGIRIL
EGYGATETAPVLSLNTPLHYRKGTVGRFLPGIEYKLESVPGVPGGSLYVKGPNVMQGY
LLHGKGFTPCPEWYGTGDIVELDGDGFVSIVARLKRFAKIGGEMISLNAVEQAAADCF
GDETAAAVALPDPRKGERIVLFHTRPGAERARLSAYLADKGITSLLLPERLVCVASLP
LLGSGKTDYASLQRMAAELARPGASGPQTHIPPKEA"
misc_feature complement(533668..535758)
/locus_tag="PM3016_454"
/note="bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated; Region: PRK08043"
/db_xref="CDD:181207"
misc_feature complement(535255..535740)
/locus_tag="PM3016_454"
/note="Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: AGPAT-like; Region:
LPLAT_AGPAT-like; cd07989"
/db_xref="CDD:153251"
misc_feature complement(order(535444..535452,535582..535593,
535639..535641,535645..535647,535654..535656))
/locus_tag="PM3016_454"
/note="putative acyl-acceptor binding pocket; other site"
/db_xref="CDD:153251"
misc_feature complement(533899..535068)
/locus_tag="PM3016_454"
/note="AMP-binding enzyme; Region: AMP-binding; pfam00501"
/db_xref="CDD:201270"
gene complement(536100..537365)
/locus_tag="PM3016_455"
/db_xref="GeneID:11882446"
CDS complement(536100..537365)
/locus_tag="PM3016_455"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310574.1"
/db_xref="GI:379718443"
/db_xref="GeneID:11882446"
/translation="MSYDVIIIGGGPSGLMAAIAASRHGARTLLIDKGDKLGRKLGIS
GGGRCNVTNAKDPEEIIKHIPGNGRFLYSAFATFSNRDIIAFFEDLGIALKEEDRGRM
FPVSDRAKTVVDALVGQVRRQGVTIRVNTPVKRVMYRDGAVAGVELRGGERIESRAVI
IATGGKSVPQTGSTGDGYPWAEEGGHTITELYPTEVPLTSRESFIKSRELQGLSLRDI
TLSVWNPKGKKLIEHEGDLLFTHFGLSGPVALRCSQFVVKTKKQFNVPTVRVTIDMFP
DRSADELYTETLRLAEQEPKKAVKNVLKGTLPERMIPLILTKAGLKEETTFANIPKQP
WLEMAKLLKAFPVEVNGTLSIEEAFVTGGGVNLKEVDPRTMESKLTGGLFFCGEVLDI
HGYTGGYNITAAFTTGYTAGKSAAENCGS"
misc_feature complement(536127..537359)
/locus_tag="PM3016_455"
/note="HI0933-like protein; Region: HI0933_like;
pfam03486"
/db_xref="CDD:202665"
misc_feature complement(<537252..537347)
/locus_tag="PM3016_455"
/note="NAD(P)-binding Rossmann-like domain; Region:
NAD_binding_8; pfam13450"
/db_xref="CDD:205628"
misc_feature complement(536118..537293)
/locus_tag="PM3016_455"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:213117"
gene 537561..537797
/locus_tag="PM3016_456"
/db_xref="GeneID:11882447"
CDS 537561..537797
/locus_tag="PM3016_456"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310575.1"
/db_xref="GI:379718444"
/db_xref="GeneID:11882447"
/translation="MTLTSVESPDWQYQQRDCMLLDAMEQRIVRLTQKNTTLLGVVTQ
NTEALELTKVAVTSNKNRLRQLWRQLSELRIHNH"
misc_feature <537615..>537779
/locus_tag="PM3016_456"
/note="Site-specific recombinase; Region: SpecificRecomb;
cl15411"
/db_xref="CDD:199547"
gene 538005..539744
/locus_tag="PM3016_457"
/db_xref="GeneID:11882448"
CDS 538005..539744
/locus_tag="PM3016_457"
/codon_start=1
/transl_table=11
/product="putative methyl-accepting chemotaxis protein"
/protein_id="YP_005310576.1"
/db_xref="GI:379718445"
/db_xref="GeneID:11882448"
/translation="MKMTVGKKIFGGFALLLVLLLVVGLFGVNQMNRLYKQAEEMNVS
WMPGVSTSKEIESVTQEIVSKMFLVVVESDVQRATELTKQIDEHFKQIDTEMAAYEAT
ILDELYPEDRHNFEELKKEISGLKSAIEESKKLAADVNLEAGVGSRIGEVNNMIKSLT
DRLRASNEILDKVTKFNDDGAVRLAKLAAETNESARGVIFTVIAAAILIGLVMAYLIA
RNISRPMIQASEALGRVAAGDLTVEPLKVKSRDEIGQLAEAFNRMTADMNAMVSQIKV
SSEMVAASAEQLLASAEQSSKAAESVADGSQEASDYTEKQMQSVEELFNALSEVSAGM
QQISGNGEIMLTMVRETNELSDRGGRAVQAIAEQMNEINQTSEESSRMIRMLGEQSKQ
IGNIVTLITGIANQTNLLALNAAIEAARAGEHGKGFAVVAGEVRKLAEQSVQSAAQIT
SLVESIQRDTDKVILSVERGTDKVYEGIRKAEDVRDAFTEIKESIQTVSVKVEEVTHS
VEDMTASSEEMTATIETVSTASEQIATASQTNAAASQQQLASMQEISASSQSLAHLAE
ELNEVLARFKTNK"
misc_feature 538008..>538397
/locus_tag="PM3016_457"
/note="Four helix bundle sensory module for signal
transduction; Region: 4HB_MCP_1; pfam12729"
/db_xref="CDD:193205"
misc_feature 538665..538793
/locus_tag="PM3016_457"
/note="Histidine kinase, Adenylyl cyclase,
Methyl-accepting protein, and Phosphatase (HAMP) domain.
HAMP is a signaling domain which occurs in a wide variety
of signaling proteins, many of which are bacterial. The
HAMP domain consists of two alpha helices...; Region:
HAMP; cd06225"
/db_xref="CDD:100122"
misc_feature order(538665..538670,538677..538682,538686..538691,
538698..538703,538707..538709,538758..538763,
538767..538772,538779..538784,538788..538793)
/locus_tag="PM3016_457"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100122"
misc_feature 538908..539732
/locus_tag="PM3016_457"
/note="Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer); Region: MA; smart00283"
/db_xref="CDD:197627"
misc_feature 538989..539585
/locus_tag="PM3016_457"
/note="Methyl-accepting chemotaxis protein (MCP),
signaling domain; Region: MCP_signal; cd11386"
/db_xref="CDD:206779"
misc_feature order(539010..539015,539022..539027,539034..539036,
539043..539048,539052..539057,539064..539066,
539073..539078,539085..539087,539094..539099,
539106..539111,539118..539120,539127..539132,
539136..539141,539151..539153,539157..539162,
539169..539171,539178..539183,539190..539195,
539202..539204,539211..539213,539220..539225,
539232..539234,539244..539246,539253..539255,
539274..539276,539286..539288,539295..539297,
539304..539309,539316..539318,539325..539330,
539337..539342,539346..539351,539358..539363,
539400..539405,539412..539414,539421..539426,
539433..539435,539442..539447,539451..539456,
539463..539468,539475..539477,539484..539489,
539496..539498,539505..539510,539514..539519,
539526..539531,539535..539540,539547..539549,
539556..539561,539568..539570,539577..539582)
/locus_tag="PM3016_457"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:206779"
misc_feature 539220..539321
/locus_tag="PM3016_457"
/note="putative CheW interface [polypeptide binding];
other site"
/db_xref="CDD:206779"
gene complement(539953..541281)
/locus_tag="PM3016_458"
/db_xref="GeneID:11882449"
CDS complement(539953..541281)
/locus_tag="PM3016_458"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310577.1"
/db_xref="GI:379718446"
/db_xref="GeneID:11882449"
/translation="MSSDPLPLLLNVVLIVVLVLLNGFFVAAEFAMVKVRNSRIDVLA
QSGNLSARLAQKIMANLNAYLSACQLGITLASLGLGWVGEPVIADALEPVLKGWLGLS
DTVVHTVSFLVAFSLITTLHITLGEQFPKTYAIRQSENVTLWAAMPLVVMYKVMYPFI
WILNGISNWMLKRVGIEPATEHESAHTDEEIRVLVKESHKSGFIDNTELTLFDNIFEF
SETNAREIMIPRTEMGCLYANLSFQENLDIALNEMRTRYPVCDPDKDNIIGFVHIKDL
LKAQGKVDDIRSIARPITKVPESMPISTLLKLMQKKKGQIALLIDEYGGTSGLVTIED
ILEEIVGEIQDEFDPDPRPSVEIRDDDSYSIDGRLLIDEVNEQFGLEIESEDYDTIGG
WIYSQVEIPPKQGQSIRYGDTYEFVIEETDDLRIARLTVKRLEAQQTQSA"
misc_feature complement(539977..541215)
/locus_tag="PM3016_458"
/note="Hemolysins and related proteins containing CBS
domains [General function prediction only]; Region: TlyC;
COG1253"
/db_xref="CDD:31445"
misc_feature complement(540658..541215)
/locus_tag="PM3016_458"
/note="Domain of unknown function DUF21; Region: DUF21;
pfam01595"
/db_xref="CDD:201879"
misc_feature complement(540268..540591)
/locus_tag="PM3016_458"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with the CorC_HlyC domain. CorC_HlyC is a transporter
associated domain. This small domain is found in Na+/H+
antiporters, in proteins involved in...; Region:
CBS_pair_CorC_HlyC_assoc; cd04590"
/db_xref="CDD:73090"
misc_feature complement(539980..540210)
/locus_tag="PM3016_458"
/note="Transporter associated domain; Region: CorC_HlyC;
smart01091"
/db_xref="CDD:198159"
gene 541643..542626
/locus_tag="PM3016_459"
/db_xref="GeneID:11882450"
CDS 541643..542626
/locus_tag="PM3016_459"
/codon_start=1
/transl_table=11
/product="cation diffusion facilitator family transporter"
/protein_id="YP_005310578.1"
/db_xref="GI:379718447"
/db_xref="GeneID:11882450"
/translation="MPNLWQAIRKGNTSSGIAALGNAGLAVLKGVAAFFSGSGAMFAS
AMHSIADAVNQGFVFAGSVLAERKPTKRFPAGFGRVINIFCMIAVIVVTVMAYETVKE
GFHLLQHPAESEGFWLSFVILLAAIAVDGGVLIKAMHEILKETRVEAHGMDVIPAAFR
NVGRAAPPTRLVFYEDIVATTGAVLALAAVVIAEFTPLKVFDGIATILIGLLMVIVAF
KVGFDNMAGLIGVAAPVEVETKVSELILGDPDVRDINTLRIIQEGRFYHVDGYIELRR
GLALAEADDIKFRVRDKLLADIDIADVTLGIIEDNGIQTWNLEELRGESRG"
misc_feature 541667..542554
/locus_tag="PM3016_459"
/note="Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism]; Region: MMT1; COG0053"
/db_xref="CDD:30402"
misc_feature 541712..542578
/locus_tag="PM3016_459"
/note="Cation efflux family; Region: Cation_efflux;
pfam01545"
/db_xref="CDD:201849"
gene 543210..543341
/locus_tag="PM3016_460"
/db_xref="GeneID:11882451"
CDS 543210..543341
/locus_tag="PM3016_460"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310579.1"
/db_xref="GI:379718448"
/db_xref="GeneID:11882451"
/translation="MAKNKKNRSNNSKEQEMHENSNGQANAAGVMDKRLSGPNRPAE"
gene 543355..543792
/locus_tag="PM3016_461"
/db_xref="GeneID:11882452"
CDS 543355..543792
/locus_tag="PM3016_461"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310580.1"
/db_xref="GI:379718449"
/db_xref="GeneID:11882452"
/translation="MTTPNRPGGHDPEGYDHVNTDIEYNAKNDPALDPFEIEFKPEYQ
SGRGPREAFVNEHGVLIGDHDYTSANSPLEQWSKDTDPSIMSGDEWVHPYKDVGFQTA
ENRDIFERGIPPKADRFMHPDKDVAYDAFQPGEADPQRSEDGR"
misc_feature 543439..543678
/locus_tag="PM3016_461"
/note="Protein of unknown function (DUF3905); Region:
DUF3905; pfam13045"
/db_xref="CDD:205226"
gene 543920..544354
/locus_tag="PM3016_462"
/db_xref="GeneID:11882453"
CDS 543920..544354
/locus_tag="PM3016_462"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310581.1"
/db_xref="GI:379718450"
/db_xref="GeneID:11882453"
/translation="MSMSFERYMMDMVQPMRDELTRIGIQELRTPEEVTEALENMKGT
ALVVVNSVCGCAAGQCRPGVTKALQHEVKPDHLYTVFAGQDKEATAKAREFFAPYPPS
SPSIALMKDGELVHFIQRHQVEDRSAEMIANDLIGAFETYCK"
misc_feature 543941..544348
/locus_tag="PM3016_462"
/note="bacillithiol system oxidoreductase, YphP/YqiW
family; Region: YphP_YqiW; TIGR04191"
/db_xref="CDD:211914"
gene 544595..545404
/locus_tag="PM3016_463"
/db_xref="GeneID:11882454"
CDS 544595..545404
/locus_tag="PM3016_463"
/codon_start=1
/transl_table=11
/product="NAD+ synthetase"
/protein_id="YP_005310582.1"
/db_xref="GI:379718451"
/db_xref="GeneID:11882454"
/translation="MSLQQEIIAKLGVKPEINVQEEIRKRVDFLKEYVLKAGVDGLLI
AISGGIDSAVATGLCKRATDELTEEKGREYKTLGVFQPYGTQEDIADSYATAEAFNLK
YKVETNIEEAVNEMALETEHALKSIGVHQHVSRGGKGNIKARTRMVVQYALAFDLNLL
VVGTDHASEAITGFFTKWGDGAVDITPLRTLNKRQVRALARELGVPKSVLDKAPTAGL
WEGQTDEKELGITYEDNSDYLEGKQIADEVREKLEKHYLRTEHKRTDIPGI"
misc_feature 544640..545401
/locus_tag="PM3016_463"
/note="NAD synthase [Coenzyme metabolism]; Region: NadE;
COG0171"
/db_xref="CDD:30520"
misc_feature 544643..545383
/locus_tag="PM3016_463"
/note="NAD+ synthase is a homodimer, which catalyzes the
final step in de novo nicotinamide adenine dinucleotide
(NAD+) biosynthesis, an amide transfer from either ammonia
or glutamine to nicotinic acid adenine dinucleotide
(NaAD). The conversion of NaAD to NAD...; Region:
NAD_synthase; cd00553"
/db_xref="CDD:30166"
misc_feature order(544667..544672,544679..544681,544688..544693,
544898..544903,544907..544912,544919..544924,
544931..544936,545003..545005,545015..545017,
545024..545029,545033..545041,545045..545053,
545057..545062,545123..545128,545135..545152,
545159..545164,545375..545377,545381..545383)
/locus_tag="PM3016_463"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:30166"
misc_feature order(544724..544735,544748..544750,544829..544837,
545000..545002,545012..545014,545021..545026,
545030..545032,545084..545086,545099..545101,
545114..545125,545132..545134,545237..545242,
545246..545248,545273..545275,545375..545380)
/locus_tag="PM3016_463"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:30166"
misc_feature order(544727..544735,544745..544750,544832..544837,
545030..545032,545084..545086,545171..545173,
545234..545239)
/locus_tag="PM3016_463"
/note="ATP binding pocket [chemical binding]; other site"
/db_xref="CDD:30166"
misc_feature order(544733..544735,544745..544747,545099..545101,
545237..545239)
/locus_tag="PM3016_463"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:30166"
misc_feature order(544850..544852,545225..545248,545255..545278)
/locus_tag="PM3016_463"
/note="active-site loop [active]"
/db_xref="CDD:30166"
gene complement(545514..546422)
/locus_tag="PM3016_464"
/db_xref="GeneID:11882455"
CDS complement(545514..546422)
/locus_tag="PM3016_464"
/codon_start=1
/transl_table=11
/product="manganese catalase"
/protein_id="YP_005310583.1"
/db_xref="GI:379718452"
/db_xref="GeneID:11882455"
/translation="MITRHNKLQIELPKSPYSDPNAASAVQELLGGKFGEMSTLNNYM
FQSHNFRGKKKLKPFYDLVASITAEEFGHVELVSHTINMVLTGERRDTYPGDPDIGPM
RNAKDKRYSLHFIPNAQTAYVADSQGRPWVGDNVFNSGNLVLDLLHNFFLECGARTHK
MRVYEMTDHPTARHMIGYLLVRGGVHIIAYAKALEVATGVDVTKMLPIPSLENKYFDE
ARKFEAIGEHRKLYTFSPDDYRDIALIWKGQHPEDGSPLETVFGSPPGAPIPDLPEVP
EEFAPGISAEDFLQIAKRLQSNAGMK"
misc_feature complement(545838..546422)
/locus_tag="PM3016_464"
/note="Manganese catalase, ferritin-like diiron-binding
domain; Region: Mn_catalase; cd01051"
/db_xref="CDD:153110"
misc_feature complement(order(545865..545867,545964..545966,
546204..546206,546213..546215,546315..546317))
/locus_tag="PM3016_464"
/note="dimanganese center [ion binding]; other site"
/db_xref="CDD:153110"
gene complement(546532..547884)
/locus_tag="PM3016_465"
/db_xref="GeneID:11882456"
CDS complement(546532..547884)
/locus_tag="PM3016_465"
/codon_start=1
/transl_table=11
/product="adenosylmethionine-8-amino-7-oxononanoate
aminotransferase"
/protein_id="YP_005310584.1"
/db_xref="GI:379718453"
/db_xref="GeneID:11882456"
/translation="MEHRDKVRLLEADRRYVWHPFTQMKDYAERDPVLIERAEGVFLY
DADGKAYYDTNSSWWVNVHGHAHPRIREAVNRQMAKMDHVMFAGLTHAPGIELAERLT
ALTPDGLTKVFYSDNGSTAVEVALKMSFQYWQQTGCPDKTTFAYVEHSYHGDTIGAVS
VGGVDQYHSVFRPLLFGAHKVPSPDPRGRQDGDAEAAAAQALEAVRHLFEASAGEIAA
LIVEPMIQAAGGMILHPASYVRGLRELCTQYGVHLIADEVAVGFGRTGRMFACEHAGI
SPDFLCLSKGLTAGMLPLSVTMTTAGIYDAFYDDYAKLKTFTHGHSFTGNPLACAVAL
ESLRIFEEEGVLEQAAAAASHLQQAAARLAADPGVAHLRGLGMVAAFDLYRDRDSGER
YPWEERIGFRVYEEGLQQGLFLRPLGDTIYFWLPLCTTAAQIDDILGRTEKVLQRMSR
"
misc_feature complement(546550..547860)
/locus_tag="PM3016_465"
/note="Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The major
groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase;
Region: OAT_like; cd00610"
/db_xref="CDD:99735"
misc_feature complement(546550..547836)
/locus_tag="PM3016_465"
/note="adenosylmethionine-8-amino-7-oxononanoate
transaminase; Region: bioA; TIGR00508"
/db_xref="CDD:200023"
misc_feature complement(order(547030..547032,547108..547113,
547117..547119,547219..547221,547423..547425,
547429..547434,547528..547536))
/locus_tag="PM3016_465"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99735"
misc_feature complement(order(547030..547032,547108..547110,
547117..547119,547219..547221,547429..547434,
547528..547533))
/locus_tag="PM3016_465"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99735"
misc_feature complement(547030..547032)
/locus_tag="PM3016_465"
/note="catalytic residue [active]"
/db_xref="CDD:99735"
gene 547980..548381
/locus_tag="PM3016_466"
/db_xref="GeneID:11882457"
CDS 547980..548381
/locus_tag="PM3016_466"
/codon_start=1
/transl_table=11
/product="4'-phosphopantetheinyl transferase"
/protein_id="YP_005310585.1"
/db_xref="GI:379718454"
/db_xref="GeneID:11882457"
/translation="MIIGIGTDLLDIARVQAILKQPSGERFLQRVLTPAERELAAGRG
GRLAEFTAGRFAAKEAVVKALGCGIGREVGFGDIEVLPDAKGKPHCRLSEASLGRLAA
GGTDVRGLIVHLSITHSDTAAMAYAMAELRA"
misc_feature 547980..548336
/locus_tag="PM3016_466"
/note="4'-phosphopantetheinyl transferase; Provisional;
Region: acpS; PRK00070"
/db_xref="CDD:178838"
gene complement(548529..548912)
/locus_tag="PM3016_467"
/db_xref="GeneID:11882458"
CDS complement(548529..548912)
/locus_tag="PM3016_467"
/codon_start=1
/transl_table=11
/product="cytochrome c class I"
/protein_id="YP_005310586.1"
/db_xref="GI:379718455"
/db_xref="GeneID:11882458"
/translation="MIIKKTIQIVLLIGAAAAMLAACGPKNSPEPFGGGKNAADTAAA
AKAMEGASEPVQALYKQRCLSCHGGALEGKVGPSTNLQQVGGRFTKEQIAAQIARGGG
GMPGFQDKLSAEEIEGLSAWLAGKK"
misc_feature complement(548544..548747)
/locus_tag="PM3016_467"
/note="Cytochrome C oxidase, cbb3-type, subunit III;
Region: Cytochrome_CBB3; pfam13442"
/db_xref="CDD:205620"
gene complement(548909..549517)
/locus_tag="PM3016_468"
/db_xref="GeneID:11882459"
CDS complement(548909..549517)
/locus_tag="PM3016_468"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310587.1"
/db_xref="GI:379718456"
/db_xref="GeneID:11882459"
/translation="MKQGDLIARSASGPALRSALRDRHRLAAASYAPWLLVWGAERAV
NAGLRFAEPWREAGRLPAGLFLAALLVSLSLLLWEKLRRRAPAGVPARLLPATLVRSL
AVVLGLSALYLAGSRMSLWGLTPYDSALLPGFVLASAYLVLGRRLGWPLTVLGVWMLA
LTAVTAWKYLGFAPILVSGLGGLSLMAVAGLLRLWTRGMRYQ"
gene complement(549607..550461)
/locus_tag="PM3016_469"
/db_xref="GeneID:11882460"
CDS complement(549607..550461)
/locus_tag="PM3016_469"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_005310588.1"
/db_xref="GI:379718457"
/db_xref="GeneID:11882460"
/translation="MLTPGELAARLNKLVVSILLVGHQKCESHWHQKSRSIKYHSVWL
IIKGRGTFTIGGTHYPAEPGKLFCFTPGMVVERTTDPEQPLEYYFLRFHYTECYEEKE
QWIYRNAAESKFPLEGMYTVTNTPQLIYQMEQLDLLWKRRGHMTAMRRKIVLQDFFLT
LVADFRAQKIAGDTTAAIELTQDYMIGHYREPLTLETLAQMAGLSVSHYSRLFKKYIG
YSPIDYLTHLRVDRAKELLVLSDYRLKSIAGSVGYTDEFYFSRIFKKVTGESPREYAK
KHRFFPTS"
misc_feature complement(<550183..550377)
/locus_tag="PM3016_469"
/note="Cupin domain; Region: Cupin_2; cl09118"
/db_xref="CDD:212615"
misc_feature complement(549784..549909)
/locus_tag="PM3016_469"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature complement(549640..549888)
/locus_tag="PM3016_469"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature complement(549640..549744)
/locus_tag="PM3016_469"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 550539..551690
/locus_tag="PM3016_470"
/db_xref="GeneID:11882461"
CDS 550539..551690
/locus_tag="PM3016_470"
/codon_start=1
/transl_table=11
/product="A/G-specific adenine glycosylase"
/protein_id="YP_005310589.1"
/db_xref="GI:379718458"
/db_xref="GeneID:11882461"
/translation="MYSTEQKQYFSEKLLSWYRRHKRDLPWRRSRNPYHIWISEIMLQ
QTRVETVIPYFHRFVDKFPTVEALAEAPEDEVLKAWEGLGYYSRARNLQSAVREVQER
YGGVVPDTKEEVFALKGVGPYTAGAILSIAYNKPEPAVDGNVMRVLSRYFLIEEDIMK
GSTRVLMEKLAKELIPEGAAGDFNQGLMELGAMVCTPKSPHCLTCPVMLHCSGRAAGM
EAELPVKKKAKPPRPESRYVALLEGTGGQAGRVLIRQRPAEGLLARMWELPHALAPGT
GTDGRDTAQGPDPAPAHEALAEHLDADGLGLGELRWFMPAEHTFSHIHWELDVFLGTV
DNPSLLPESSAPLPSHYRWITREEMEQYAFPNVFLRILKAYFKEREGAS"
misc_feature 550539..551663
/locus_tag="PM3016_470"
/note="A/G-specific DNA glycosylase [DNA replication,
recombination, and repair]; Region: MutY; COG1194"
/db_xref="CDD:31387"
misc_feature 550638..551111
/locus_tag="PM3016_470"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature order(550671..550679,550686..550688,550800..550802)
/locus_tag="PM3016_470"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature 550887..550910
/locus_tag="PM3016_470"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature order(550917..550919,551088..551090,551100..551102)
/locus_tag="PM3016_470"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature 550959..550961
/locus_tag="PM3016_470"
/note="active site"
/db_xref="CDD:28938"
misc_feature 551121..551171
/locus_tag="PM3016_470"
/note="Iron-sulfur binding domain of endonuclease III;
Region: EndIII_4Fe-2S; pfam10576"
/db_xref="CDD:204516"
misc_feature 551283..551663
/locus_tag="PM3016_470"
/note="DNA glycosylase (MutY in bacteria and hMYH in
humans) is responsible for repairing misread A*oxoG
residues to C*G by removing the inappropriately paired
adenine base from the DNA backbone. It belongs to the
Nudix hydrolase superfamily and is important...; Region:
DNA_Glycosylase_C; cd03431"
/db_xref="CDD:72889"
misc_feature order(551316..551324,551490..551492,551499..551504)
/locus_tag="PM3016_470"
/note="DNA binding and oxoG recognition site [nucleotide
binding]"
/db_xref="CDD:72889"
gene complement(551776..552459)
/locus_tag="PM3016_471"
/db_xref="GeneID:11882462"
CDS complement(551776..552459)
/locus_tag="PM3016_471"
/codon_start=1
/transl_table=11
/product="Crp/Fnr family transcriptional regulator"
/protein_id="YP_005310590.1"
/db_xref="GI:379718459"
/db_xref="GeneID:11882462"
/translation="MSNLISLLQNVPLFQDLSVTELESIAPLFQERKYKKGTILFLEG
DLGEEFYLIGSGVVKIYRIDNYKEIILSLFRQGDFFGEMSLIQKGLQRSAAAETLEAC
SIYTLMRSDFASFMENSPKLCMRLLEVTMERLRKANEQIYNLTFLDVRTRTIKVISQL
AEEHGLQRSSGYLINMKLTHQQLANMVGTVRESVTKVLQELQEDDIITIDKKYIMVKD
PERMAKLIY"
misc_feature complement(551800..552441)
/locus_tag="PM3016_471"
/note="cAMP-binding proteins - catabolite gene activator
and regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms]; Region: Crp; COG0664"
/db_xref="CDD:31008"
misc_feature complement(552079..552423)
/locus_tag="PM3016_471"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:28920"
misc_feature complement(order(552178..552186,552214..552219))
/locus_tag="PM3016_471"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:28920"
misc_feature complement(order(552094..552102,552112..552120))
/locus_tag="PM3016_471"
/note="flexible hinge region; other site"
/db_xref="CDD:28920"
misc_feature complement(551785..551997)
/locus_tag="PM3016_471"
/note="Crp-like helix-turn-helix domain; Region:
HTH_Crp_2; pfam13545"
/db_xref="CDD:205723"
misc_feature complement(order(551890..551892,551917..551925,
551929..551931))
/locus_tag="PM3016_471"
/note="non-specific DNA interactions [nucleotide binding];
other site"
/db_xref="CDD:28976"
misc_feature complement(551872..551892)
/locus_tag="PM3016_471"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28976"
misc_feature complement(order(551872..551874,551884..551889))
/locus_tag="PM3016_471"
/note="sequence specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28976"
misc_feature complement(551884..551889)
/locus_tag="PM3016_471"
/note="putative cAMP binding site [chemical binding];
other site"
/db_xref="CDD:28976"
gene 552619..553242
/locus_tag="PM3016_472"
/db_xref="GeneID:11882463"
CDS 552619..553242
/locus_tag="PM3016_472"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310591.1"
/db_xref="GI:379718460"
/db_xref="GeneID:11882463"
/translation="MDPVLLLSFTAVAVLLTLAPGPDLLFVIAQSLTNGRKAGVITGL
GLSTGVVAHTFAAAVGLSALLYNSLILFQLVKYAGAAYLLYLAWMAWKEGSGAAGLAS
PPAQAAGALYRRGILMNVLNPKVSLFFLALLPQFVSAQGGEPAVQMIVLGAVFMVQAM
LIFTLVSLCAGWLAGRLTGGKGMPPWIHKAKAVLYAAIGLRLVFSER"
misc_feature 552619..553239
/locus_tag="PM3016_472"
/note="Putative threonine efflux protein [Amino acid
transport and metabolism]; Region: RhtB; COG1280"
/db_xref="CDD:31471"
gene complement(553373..553987)
/locus_tag="PM3016_473"
/db_xref="GeneID:11882464"
CDS complement(553373..553987)
/locus_tag="PM3016_473"
/codon_start=1
/transl_table=11
/product="SodA protein"
/protein_id="YP_005310592.1"
/db_xref="GI:379718461"
/db_xref="GeneID:11882464"
/translation="MAHQLPALPYANNALEPHIDEMTMMIHHDRHHNTYVTNLNAALE
AHADLQSKSVEELISNLDALPEGIRTAVRNNGGGHANHSLFWETIGPNGGGAPSGKLA
DAINAELGGFDKFKEDFAKAATTRFGSGWAFLSVTKDGKLKVASLPNQDSPIMEGETP
VLGLDVWEHAYYLKYQNKRPDYIAAFWNVVNWEEVGKRYEAAAK"
misc_feature complement(553376..553987)
/locus_tag="PM3016_473"
/note="Superoxide dismutase [Inorganic ion transport and
metabolism]; Region: SodA; COG0605"
/db_xref="CDD:30950"
misc_feature complement(553727..553984)
/locus_tag="PM3016_473"
/note="Iron/manganese superoxide dismutases, alpha-hairpin
domain; Region: Sod_Fe_N; pfam00081"
/db_xref="CDD:200985"
misc_feature complement(553391..553705)
/locus_tag="PM3016_473"
/note="Iron/manganese superoxide dismutases, C-terminal
domain; Region: Sod_Fe_C; pfam02777"
/db_xref="CDD:202388"
gene complement(554111..554290)
/locus_tag="PM3016_474"
/db_xref="GeneID:11882465"
CDS complement(554111..554290)
/locus_tag="PM3016_474"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310593.1"
/db_xref="GI:379718462"
/db_xref="GeneID:11882465"
/translation="MTDDIRRIHELNDRKTEEWTSEELHYHQRVMADLSPWLNAQGTA
MLGQIIHEIERRSGY"
gene complement(554640..555191)
/locus_tag="PM3016_475"
/db_xref="GeneID:11882466"
CDS complement(554640..555191)
/locus_tag="PM3016_475"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310594.1"
/db_xref="GI:379718463"
/db_xref="GeneID:11882466"
/translation="MKPALSSLNARRPSKLMPLFAAAALTAAAGCSPGPAGSAPPPAY
SSTAGSRPPAATASSAQVPPEDFCADADQDRSFDDCSGFIDAAENAAFYGGAVPYYRR
SSGGLAGRSPAASQPSKTAPGSTVENKAPGARCTRSRNDQTCRNVYQKRGWRRGNGFR
HDGRCSRCGGRGRHVAPCTSGSE"
gene 555438..558602
/locus_tag="PM3016_476"
/db_xref="GeneID:11882467"
CDS 555438..558602
/locus_tag="PM3016_476"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310595.1"
/db_xref="GI:379718464"
/db_xref="GeneID:11882467"
/translation="MDWPKQRLACAGLAAALVLSPFLSCAADAAAEMGTAEPEPVQES
EPIPAASAPEVVPGKVLVKYKKTAEAPSGARMLKASGKVSTTVTVQTQEQESVPDAVK
RLMENPDVEYAEPVYRFHYTDLDYRPALPVEKGSLLGAGKGSGKSLKTVASNDPYLDY
QWGLSVTELTYGWERVQGNTDRQPVTIAVIDSGVRADHEDLAGVLLRGYDVKNRDWNP
EDENGHGTMVAGLAAALTDNGVGIAGAAGPGPVRILPVKVGGSGRTDIESSDVAEGIY
WAADNGADVINLSLGMSGEVQAVKDAIEYAFSKKIVVVAAAGNDSNHWTGDEAGNVLR
EEEETEGEELPRRAYRTLFPASMPGVVSVGSVTRAEGGGLTIADFSNIGRVTVVAPGT
SMYSTLHTGPDAVGIGNGTSFSAPLAAGLAALLKMQDPDLTSADVERILSHTARRLEP
PAAKGSGSYSASAYYGGGLLDGTAAFTRPRLSLTALRTTAGSAGQSLLQAKLRAEDDT
GREAGAEVSPGTAVRVSITSRTGESKTVTREVYLGRTLEERLNAEDVYHLEVQAKLPE
DLEGRYVPPGPVVLLKRPGAPETSPAAGSYTGKQTVELKTVTAGAKLVYGFAGSTTVY
DYTGPITLTESRTLVVYAVKNGIASEPRSYKYTIGAGSSNSGGGSSSGTGVSQPAAGE
GGSPGAAPPPVTVAPPKEELKERITSAKGAPVTVDVPDKGAGGWVFELAGEVWNLAKT
TGTKLIIQGDGLSFTVPPGAFDVADDTAVKLSALSAAEAPGRPAYAEPASPVYKLRLE
AGGQEITAFEKPVLLTVDFDGGKITDLNRSGVYRYEEETGNWAYAGGSPEQNQYRIEL
KGFGRFTVMQWNRHFADLEGHWAREAVERMASKGVADGMTDTEFAPDAEVTRAQFTAL
LARTLQLPQSAGELPFGDVPEDAWYRQALVNALAAGLISGVSDTQFAPDELITREQMA
LMLVNAGNYAAGPGNGAVLASAEPVSFRDGGRISAWAAEAVKKAAGLGLLKGMPDGTF
GPANPASRGQAVTVLCRLLDPDAP"
misc_feature 555897..556781
/locus_tag="PM3016_476"
/note="Peptidase domain in the S8 and S53 families;
Region: Peptidases_S8_S53; cl10459"
/db_xref="CDD:209143"
misc_feature order(556107..556109,556305..556307,556671..556673)
/locus_tag="PM3016_476"
/note="active site"
/db_xref="CDD:173787"
misc_feature order(556107..556109,556671..556673)
/locus_tag="PM3016_476"
/note="catalytic residues [active]"
/db_xref="CDD:173787"
misc_feature 557190..557375
/locus_tag="PM3016_476"
/note="Chitobiase/beta-hexosaminidase C-terminal domain;
Region: CHB_HEX_C; pfam03174"
/db_xref="CDD:202566"
misc_feature 558048..558170
/locus_tag="PM3016_476"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
misc_feature 558222..558353
/locus_tag="PM3016_476"
/note="S-layer homology domain; Region: SLH; pfam00395"
/db_xref="CDD:201204"
gene 558835..559272
/locus_tag="PM3016_477"
/db_xref="GeneID:11882468"
CDS 558835..559272
/locus_tag="PM3016_477"
/codon_start=1
/transl_table=11
/product="N-acetyltransferase GCN5"
/protein_id="YP_005310596.1"
/db_xref="GI:379718465"
/db_xref="GeneID:11882468"
/translation="MLVGSYQVRSFQLSDYVAVTCLLESVLTEDCYEETMEAFARQLS
WDSELVLVAEQEGEIVGIIVGTIDNHNGYYYRIAVEAEHQRRGIGQSLIESLRQRFIG
RKVRRILVTVDAHNEVVLPVYEKAGYQAADFSRAPHRLSIVNG"
misc_feature <558949..559230
/locus_tag="PM3016_477"
/note="putative acetyltransferase; Provisional; Region:
PRK03624"
/db_xref="CDD:179611"
misc_feature <559036..559167
/locus_tag="PM3016_477"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(559063..559071,559099..559104)
/locus_tag="PM3016_477"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 559574..560146
/locus_tag="PM3016_478"
/db_xref="GeneID:11882469"
CDS 559574..560146
/locus_tag="PM3016_478"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310597.1"
/db_xref="GI:379718466"
/db_xref="GeneID:11882469"
/translation="MQKGRHLMGAFHPYLIKSFKHDGHLHRMWLKNWLVPDDLLHESH
RAESMLVLINSQTKIVEADGKEWVSRIPGISFFIPKMWFNVVALIEEHGVRYYCNVAS
PPYVNNRIITYIDYDLDVIRMPAGDIHVVDQDEYEQHKILYHYSSIVDGKVKQGLNAL
LARVRAGGAPFQDDLVMFYYERWKEYGAEG"
misc_feature 559619..560131
/locus_tag="PM3016_478"
/note="Protein of unknown function (DUF402); Region:
DUF402; cl00979"
/db_xref="CDD:207270"
gene 560148..560738
/locus_tag="PM3016_479"
/db_xref="GeneID:11882470"
CDS 560148..560738
/locus_tag="PM3016_479"
/codon_start=1
/transl_table=11
/product="signal peptidase I"
/protein_id="YP_005310598.1"
/db_xref="GI:379718467"
/db_xref="GeneID:11882470"
/translation="MGLLPAKGMQEQEEQKASASPEGSLREIWKWMKLTAAGLLLVVF
IHQYFFHFSTVRGISMEPTLVEGEWLFINKTIRLAGMPQRGDVIVIKRNSEEERKPVF
LVKRVVAVGGDEVHIRRGRLYVNGEAVSEPYTGTPIEDGGFEPYTIEEGHLFVMGDNR
HRYASHDSRSFGAVPLEEVVGRAEWIIWPLDKWRRL"
misc_feature 560262..560720
/locus_tag="PM3016_479"
/note="signal peptidase I, bacterial type; Region:
sigpep_I_bact; TIGR02227"
/db_xref="CDD:211726"
misc_feature 560301..560696
/locus_tag="PM3016_479"
/note="The S26 Type I signal peptidase (SPase; LepB;
leader peptidase B; leader peptidase I; EC 3.4.21.89)
family members are essential membrane-bound serine
proteases that function to cleave the amino-terminal
signal peptide extension from proteins that are...;
Region: S26_SPase_I; cd06530"
/db_xref="CDD:119398"
misc_feature order(560322..560324,560460..560462)
/locus_tag="PM3016_479"
/note="Catalytic site [active]"
/db_xref="CDD:119398"
gene 560760..562016
/locus_tag="PM3016_480"
/db_xref="GeneID:11882471"
CDS 560760..562016
/locus_tag="PM3016_480"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310599.1"
/db_xref="GI:379718468"
/db_xref="GeneID:11882471"
/translation="MEDRHPDHDTELPAGLASLPDVPAGAWKRLKDKLRSAAPDLGID
KIGFASAEPFTELRDILERHREKGYESGFEERDIAKRVDPALTMERPRSILSIAVAYP
SKLPNPPRSEPGRYRGILSRSAWGTDYHHVLRDRLQKLENWIRAEVPGARTVSMVDTG
VLVDRAVAERAGIGWIGKNCSVITPEWGSWVYLGEMVTNVPFPPDVPVLQDCGDCTLC
IDACPTGALVGPGQLNAQRCVSYLTQTKGIIEDDELKRKIGNRLYGCDTCQIVCPKNK
GIHADHHPELQPDPEQVKPLLVPLLQMTNREFKEKFGTSSASWRGRKPIQRNAILALG
NFRDREALPELLRVLRTDERPEIRATAAWAVGRIGGAAAEAALREALERETDEAARRE
IVKAQGLAQEQEQTAAQEQHTRETGA"
misc_feature 560844..561860
/locus_tag="PM3016_480"
/note="Uncharacterized Fe-S protein [Energy production and
conversion]; Region: COG1600"
/db_xref="CDD:31788"
misc_feature 561000..561236
/locus_tag="PM3016_480"
/note="Domain of unknown function (DUF1730); Region:
DUF1730; pfam08331"
/db_xref="CDD:149403"
gene 562013..562558
/locus_tag="PM3016_481"
/db_xref="GeneID:11882472"
CDS 562013..562558
/locus_tag="PM3016_481"
/codon_start=1
/transl_table=11
/product="iron-sulfur cluster binding protein"
/protein_id="YP_005310600.1"
/db_xref="GI:379718469"
/db_xref="GeneID:11882472"
/translation="MSTIRYHEMDSPIGVLTLGISDRDGLCQIEFGSFEEHEDRLRSW
SGRFFGTDIWGSDPAALAPFEDQLRRYFAGELRVFTLPLDLRGTPFQVGVWQALIGIP
YGEARSYKDVAEAIGSPKAVRAVGGANNRNPVPIVVPCHRVIGAAGAMVGYGGGLSIK
TFLLGLEGYEGRASAAGGGRI"
misc_feature 562019..562516
/locus_tag="PM3016_481"
/note="Methylated DNA-protein cysteine methyltransferase
[DNA replication, recombination, and repair]; Region: Ada;
COG0350"
/db_xref="CDD:30699"
misc_feature 562019..562267
/locus_tag="PM3016_481"
/note="6-O-methylguanine DNA methyltransferase,
ribonuclease-like domain; Region: Methyltransf_1N;
pfam02870"
/db_xref="CDD:145821"
misc_feature 562280..562516
/locus_tag="PM3016_481"
/note="The DNA repair protein O6-alkylguanine-DNA
alkyltransferase (ATase; also known as AGT, AGAT and MGMT)
reverses O6-alkylation DNA damage by transferring O6-alkyl
adducts to an active site cysteine irreversibly, without
inducing DNA strand breaks. ATases...; Region: ATase;
cd06445"
/db_xref="CDD:119438"
misc_feature order(562280..562285,562337..562342,562364..562366,
562373..562375,562379..562384,562388..562390,
562397..562402,562406..562408,562430..562432,
562445..562447,562466..562468)
/locus_tag="PM3016_481"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:119438"
misc_feature order(562337..562339,562430..562435,562439..562441,
562511..562513)
/locus_tag="PM3016_481"
/note="active site"
/db_xref="CDD:119438"
gene 562555..563580
/locus_tag="PM3016_482"
/db_xref="GeneID:11882473"
CDS 562555..563580
/locus_tag="PM3016_482"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310601.1"
/db_xref="GI:379718470"
/db_xref="GeneID:11882473"
/translation="MRYVHIDSVESGQYLGRTIFTANGSILLSEGVQLTVFMINQLMR
IGVTMIYIKDQEFEDLEIPELVSEETKRAVMKRMTDTFNSIRSGKDFNTKSLNLSIDS
LLEEVMQNKEVMVQLTDIRTEDNAMYVHALNVCMMSVLIGINLGLPASQLRELAIGAL
LHDVGKLELITDDEHSDKRRHHTWRGFEVLKNKRELSLLIAHVAFQHHETMDGEGLPR
QIPGEEIHLYARIVAVANTYDNLLFEKEGKRMLPHDACERMMVLAGSKLDRDIVIQFL
RTVSIYPTGASVRLTTRETGVVVGQHRGLPGRPVVRVVKGSGDDLEIKEVDLAKHTTV
FVESVLM"
misc_feature <562756..563460
/locus_tag="PM3016_482"
/note="c-di-GMP phosphodiesterase class II (HD-GYP domain)
[Signal transduction mechanisms]; Region: COG2206"
/db_xref="CDD:32388"
misc_feature 562936..563277
/locus_tag="PM3016_482"
/note="Metal dependent phosphohydrolases with conserved
'HD' motif; Region: HDc; cd00077"
/db_xref="CDD:28958"
misc_feature order(562942..562944,563038..563043,563260..563262)
/locus_tag="PM3016_482"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
misc_feature 563041..563043
/locus_tag="PM3016_482"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28958"
gene 563613..563873
/locus_tag="PM3016_483"
/db_xref="GeneID:11882474"
CDS 563613..563873
/locus_tag="PM3016_483"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310602.1"
/db_xref="GI:379718471"
/db_xref="GeneID:11882474"
/translation="MIKKSKLSVEVNEPIMWGYVVTAVVALLVGGAAGFYIGVMYLRR
QMEKMQSNPEMLQQMAKQMGYNLNKQQMAKMQQMMKKQKFRP"
gene 563944..564534
/locus_tag="PM3016_484"
/db_xref="GeneID:11882475"
CDS 563944..564534
/locus_tag="PM3016_484"
/codon_start=1
/transl_table=11
/product="protein FolE"
/protein_id="YP_005310603.1"
/db_xref="GI:379718472"
/db_xref="GeneID:11882475"
/translation="MPAKEYRNNRVIENREQIEHHVREILRLIGEDVDREGLHDTPAR
VTRMYEEIFAGYEADVKDILGVAFDEKHEELVIVKDIVYYSQCEHHMAPFFGRIHIGY
IPSGKIAGLSKFARLVEAVTRRLQVQERITSELADIIEGELEPHGCMVVVEGEHLCMC
ARGVKKPGSKTISSAVRGVFRTDASSRAEFLSLIKD"
misc_feature 563980..564528
/locus_tag="PM3016_484"
/note="GTP cyclohydrolase I (GTP-CH-I) catalyzes the
conversion of GTP into dihydroneopterin triphosphate. The
enzyme product is the precursor of tetrahydrofolate in
eubacteria, fungi, and plants and of the folate analogs in
methanogenic bacteria. In...; Region: GTP_cyclohydro1;
cd00642"
/db_xref="CDD:29763"
misc_feature order(563980..563985,563992..563997,564004..564006,
564016..564018,564025..564030,564034..564036,
564040..564042,564046..564048,564052..564060,
564064..564069,564073..564075,564085..564087,
564094..564096,564109..564111,564139..564141,
564145..564147,564157..564168,564172..564183,
564187..564189,564193..564195,564205..564210,
564217..564222,564226..564228,564232..564234,
564253..564258,564262..564264,564274..564282,
564289..564291,564319..564327,564331..564333,
564340..564342,564370..564372,564409..564417,
564424..564429,564442..564447,564451..564459,
564463..564471,564484..564489,564496..564498,
564502..564510)
/locus_tag="PM3016_484"
/note="homodecamer interface [polypeptide binding]; other
site"
/db_xref="CDD:29763"
misc_feature 563995..564528
/locus_tag="PM3016_484"
/note="GTP cyclohydrolase I; Provisional; Region:
PLN03044"
/db_xref="CDD:178607"
misc_feature order(564073..564075,564082..564084,564202..564204,
564208..564213,564268..564270,564274..564279,
564289..564291,564322..564330,564409..564411,
564415..564417,564427..564429)
/locus_tag="PM3016_484"
/note="active site"
/db_xref="CDD:29763"
misc_feature order(564202..564204,564208..564213,564409..564411,
564415..564417)
/locus_tag="PM3016_484"
/note="putative catalytic site residues [active]"
/db_xref="CDD:29763"
misc_feature order(564202..564204,564208..564213,564415..564417)
/locus_tag="PM3016_484"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:29763"
misc_feature order(564352..564354,564361..564363,564379..564381,
564385..564387,564472..564480,564484..564498)
/locus_tag="PM3016_484"
/note="GTP-CH-I/GFRP interaction surface; other site"
/db_xref="CDD:29763"
gene complement(564643..565920)
/locus_tag="PM3016_485"
/db_xref="GeneID:11882476"
CDS complement(564643..565920)
/locus_tag="PM3016_485"
/codon_start=1
/transl_table=11
/product="superoxide dismutase"
/protein_id="YP_005310604.1"
/db_xref="GI:379718473"
/db_xref="GeneID:11882476"
/translation="MQYAYGALTPLRLLEETRFWKGQEREHTVVIRELAPALEPDYKR
LLQEWEVVLARAETSAGRWIEALLRRPAPASPALRQEVRRFLEASAVQSQAFVRQLHL
LMERSRTIRTQPPLRAILLHLIRESEYFLGVLQAAAGGPGAYEEGLSGGSFAPDDAQT
GQEGQGGSDGHPLSAHDTGGDPSEAQPPEEPYDSSGATATQEGVWTMGIRPVPAYAKP
VPIGGHRLPPLPYPYDALEPHIDKETMRLHHTKHHLSYVEGLNKAELALARAREIGDY
ALVKHWERETAFHGAGHYLHTLFWQVMKPGGGGPPTGTIAADLKKSFGGFSPFRKQFS
AAAEKVEGGGWALLVWSPRSHRLEILQAEKHQNLSQWDVIPLLVLDVWEHAYYVRYRN
DRARYIEAWWNTIHWEHVNERLEAARGLKWPPF"
misc_feature complement(565516..565893)
/locus_tag="PM3016_485"
/note="Domain of unknown function (DUF2935); Region:
DUF2935; pfam11155"
/db_xref="CDD:192714"
misc_feature complement(564667..565251)
/locus_tag="PM3016_485"
/note="Superoxide dismutase [Inorganic ion transport and
metabolism]; Region: SodA; COG0605"
/db_xref="CDD:30950"
misc_feature complement(565009..565251)
/locus_tag="PM3016_485"
/note="Iron/manganese superoxide dismutases, alpha-hairpin
domain; Region: Sod_Fe_N; pfam00081"
/db_xref="CDD:200985"
misc_feature complement(564679..564975)
/locus_tag="PM3016_485"
/note="Iron/manganese superoxide dismutases, C-terminal
domain; Region: Sod_Fe_C; pfam02777"
/db_xref="CDD:202388"
gene complement(566019..567047)
/locus_tag="PM3016_486"
/db_xref="GeneID:11882477"
CDS complement(566019..567047)
/locus_tag="PM3016_486"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310605.1"
/db_xref="GI:379718474"
/db_xref="GeneID:11882477"
/translation="METNSSSSYSSVPINPTTVETAVRRTFVRRHKGLLIGLLSVLLL
LFSLLMAFHAYIAWTLARPHIDPLRSNPALSIGTAYEDITFPSLNGSSTLSGWYIPSE
MESANSRKTVVFSHGYGGNREEIWVPIYDLAKAAHKMGFNVVMFDYGYVQPDWNVTGG
LRESQELLGAVQYAKDRGADRVYVWGFSMGAGTALQAALLTKDIDGMILDSTFVLEPE
TLYHNMKQVANLPKFSQGLVHMFFPLLNGVSLNQVPYQTVKETKYDIPIFFIHGKEDL
KAPWNMVESIYQLQKDQSGSQLWLLEKDGHELIYRAHKKTYLQMTTGFLQTLSTGSPE
VVKHGQSR"
misc_feature complement(<566481..566726)
/locus_tag="PM3016_486"
/note="Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid interface.
A typical feature of lipases is 'interfacial activation',
the process of becoming...; Region: Lipase; cl14883"
/db_xref="CDD:209921"
misc_feature complement(566130..566717)
/locus_tag="PM3016_486"
/note="Alpha/beta hydrolase family; Region: Abhydrolase_5;
pfam12695"
/db_xref="CDD:205024"
misc_feature complement(566481..566492)
/locus_tag="PM3016_486"
/note="nucleophilic elbow; other site"
/db_xref="CDD:29806"
misc_feature complement(566484..566486)
/locus_tag="PM3016_486"
/note="catalytic triad; other site"
/db_xref="CDD:29806"
gene 567663..568406
/locus_tag="PM3016_487"
/db_xref="GeneID:11882478"
CDS 567663..568406
/locus_tag="PM3016_487"
/codon_start=1
/transl_table=11
/product="regulatory protein IclR"
/protein_id="YP_005310606.1"
/db_xref="GI:379718475"
/db_xref="GeneID:11882478"
/translation="MEDGKLTVRAVERALDILLCFTEAEDLSLTEISARVGLHKSTVH
RLLASLEGKGFIIRHPATERYRLGFRIWELSANLTHSDDPAVILLPELERLRDQLGET
VSLYVRDGLERVRVQAVQSNQAIRRVAPIGARLPLYVGASSKVLVAFADPAEQQALLA
DPAWPPASDPAAYEQQLAEVRSLGYATSVEEREPGAAAVSVPVFDRAEKLVAALAVSG
PSNRLTVELMKEHAPLLMDAARRMGKMLR"
misc_feature 567687..568403
/locus_tag="PM3016_487"
/note="Transcriptional regulator [Transcription]; Region:
IclR; COG1414"
/db_xref="CDD:31604"
misc_feature 567690..567842
/locus_tag="PM3016_487"
/note="IclR helix-turn-helix domain; Region: HTH_IclR;
pfam09339"
/db_xref="CDD:150115"
misc_feature <567843..568010
/locus_tag="PM3016_487"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cl02940"
/db_xref="CDD:207792"
misc_feature 568029..568382
/locus_tag="PM3016_487"
/note="Bacterial transcriptional regulator; Region: IclR;
pfam01614"
/db_xref="CDD:201890"
gene complement(568603..571309)
/locus_tag="PM3016_488"
/note="Acn"
/pseudo
/db_xref="GeneID:11882479"
gene 571554..572579
/locus_tag="PM3016_490"
/db_xref="GeneID:11882480"
CDS 571554..572579
/locus_tag="PM3016_490"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310607.1"
/db_xref="GI:379718476"
/db_xref="GeneID:11882480"
/translation="MSWRTTLYDYVHHRNRMDIEHSVEPMLPFVSDEAYLSAERSRLA
RRLDSDRERGLLPVKTETRLSIRQTVPYKNGIAADCVLKRIAVGQIGLEAYEEQRVEQ
ERICLAPSPDGEAWTIQRVEPLLGEQRLRLKTAHPGALLEADDEFEHVGLMRAPSVPL
LGPGVAPLAGTASRRSYNRGEAVRYADKWWDGNNPAYIAFEVDCTSYISQCLFAGGAP
MNYTDRRDAGWWYKGRLGGQELWSFSWAVAESLQFYLRTSRSGLRGQEVVSAGELEPG
DVIAYDWDGDGRFQHSTIVTAKDANGMPLVNAHTVSSRRRYWDYRDSHAWTTRTQYRF
IHISDAL"
misc_feature 572079..572558
/locus_tag="PM3016_490"
/note="Putative amidase domain; Region: Amidase_6;
pfam12671"
/db_xref="CDD:205008"
gene 572700..573848
/locus_tag="PM3016_491"
/db_xref="GeneID:11882481"
CDS 572700..573848
/locus_tag="PM3016_491"
/codon_start=1
/transl_table=11
/product="protein DdlB"
/protein_id="YP_005310608.1"
/db_xref="GI:379718477"
/db_xref="GeneID:11882481"
/translation="MSKIRVGLIYGGKSGEHEVSLQTALAVTKALDLSKYEVQPFYIT
KEGDWRSGPQLTAPADSVDALTFGSASSSNETGTFALQPLFGSSAAAKASGNPAVSGS
ESGAAAGPLDVVLPLLHGTFGEDGTVQGLLEMANIAYVGTGVLASAVGMDKVMMKKVF
AQEGLPQCVFRHFTKSQWEKDNAFFIMEIEVAIGYPCFVKPANLGSSVGINKARNRDE
LLSAIAEAFRYDRKVIVEEFIDARELEVAVLGNDEPQASVVGEIVSSGEFYDYKAKYI
DGKSSMIIPAEIDSEQASRIRDLAVRAFQSIDGTGLSRVDFFLRKDNGEIYINEINTM
PGFTPFSMYPLLWRESGKPYSELLDDLVRLAIQRHEEKQRLQYSFDLT"
misc_feature 572700..573797
/locus_tag="PM3016_491"
/note="D-alanyl-alanine synthetase A; Reviewed; Region:
ddl; PRK01966"
/db_xref="CDD:179356"
misc_feature 572709..573122
/locus_tag="PM3016_491"
/note="D-ala D-ala ligase N-terminus; Region:
Dala_Dala_lig_N; pfam01820"
/db_xref="CDD:201991"
misc_feature 573174..573785
/locus_tag="PM3016_491"
/note="D-ala D-ala ligase C-terminus; Region:
Dala_Dala_lig_C; pfam07478"
/db_xref="CDD:203643"
gene 573952..574269
/locus_tag="PM3016_492"
/db_xref="GeneID:11882482"
CDS 573952..574269
/locus_tag="PM3016_492"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_005310609.1"
/db_xref="GI:379718478"
/db_xref="GeneID:11882482"
/translation="MGFQTEFNSVCKFKSEQELYELLEYGRGKMVKSGFRVFPAGQKV
IAYTPGNQAIAIVKILASIAEINFQGEEVTQVEMELVRRLTEEEARIQTALAHEMFFG
EQE"
gene 574416..575093
/locus_tag="PM3016_493"
/db_xref="GeneID:11882483"
CDS 574416..575093
/locus_tag="PM3016_493"
/codon_start=1
/transl_table=11
/product="transposase IS3/IS911 family protein"
/protein_id="YP_005310610.1"
/db_xref="GI:379718479"
/db_xref="GeneID:11882483"
/translation="MSKEKYCATEKLAILEEVSSGKIGFIAATKRYGMNKTTLMKWQR
RYKLYGYEGLERSTRNRSYSAELKLQAVKDYVEGGLSKYRIIDKYRISSTTQLSNWIK
KYNGHSSLKAYKGEAQAMTKGRSTTWDERIDIVHYCLAHQHDYHKTAGQFQVSYQQVY
QWVKKFEAGGADALKDGRGRKKAPEEMTEADRQKLEMKKMEYEMERLRAENAFLKKLR
EIQRRRS"
misc_feature 574443..574601
/locus_tag="PM3016_493"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:205696"
misc_feature 574581..574937
/locus_tag="PM3016_493"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG2963"
/db_xref="CDD:32783"
misc_feature 574590..>574733
/locus_tag="PM3016_493"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
misc_feature 574803..574961
/locus_tag="PM3016_493"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:205696"
gene 575264..575971
/locus_tag="PM3016_494"
/db_xref="GeneID:11882484"
CDS 575264..575971
/locus_tag="PM3016_494"
/codon_start=1
/transl_table=11
/product="integrase catalytic subunit"
/protein_id="YP_005310611.1"
/db_xref="GI:379718480"
/db_xref="GeneID:11882484"
/translation="MMMSIYEKVEKTFGYRQLTLHMRKETGQTINHKRVYRLMKVKGI
QSVIRRKRKKYPHSTPQHVAENVLNRNFQAAEPNEKWVTDVTEFKYGNGQKAYLSAIL
DLHDKSIVSRVVGHSNNNPLVFETLKQALQAAPGSKPMLHSDRGFQYTSLDFKKLLDD
NELTQSMSRVGRCIDNGPMESFWGTLKCEKYYLHTYQTFEELERDILAYIDFYNNERL
QAKLNGLSPMEYRTKAA"
misc_feature 575270..575962
/locus_tag="PM3016_494"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: Tra5;
COG2801"
/db_xref="CDD:32633"
misc_feature 575276..575419
/locus_tag="PM3016_494"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature 575492..575824
/locus_tag="PM3016_494"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature 575801..575965
/locus_tag="PM3016_494"
/note="Integrase core domain; Region: rve_2; pfam13333"
/db_xref="CDD:205513"
gene 576147..577139
/locus_tag="PM3016_495"
/db_xref="GeneID:11882485"
CDS 576147..577139
/locus_tag="PM3016_495"
/codon_start=1
/transl_table=11
/product="putative UV damage endonuclease"
/protein_id="YP_005310612.1"
/db_xref="GI:379718481"
/db_xref="GeneID:11882485"
/translation="MIVRLGYVAMSVMVKNASPSKTMTYTHFEKLGDREAAIRKLERI
ASENIRNTQRLLKHNRAYDIEMYRISSKLIPLLGHEGLGDWDPIERLSGDFAELGQYA
KDNRMRLSFHPDHFTVFSTPREDVLRSSRADLDRHVRMLEAMGLDASAKCNIHVGGTY
GNKDSARARFLEQFGALPERIRERMTLENDDKTFNALETLEICEEAGVPMVLDIHHDA
VNPGEVPAAELWPRILQTWKGQKEQEDGSGSPRDLPPKIHVSSPKSESDPRGHADYIE
TGVFMDFVRAVAPLTPRLDVMLEAKMKDGSLIQLAEDLKKEPNITMLSQASFEI"
misc_feature 576147..577136
/locus_tag="PM3016_495"
/note="putative UV damage endonuclease; Provisional;
Region: uvsE; PRK02308"
/db_xref="CDD:179412"
gene 577258..578025
/locus_tag="PM3016_496"
/db_xref="GeneID:11882486"
CDS 577258..578025
/locus_tag="PM3016_496"
/codon_start=1
/transl_table=11
/product="protein FabI"
/protein_id="YP_005310613.1"
/db_xref="GI:379718482"
/db_xref="GeneID:11882486"
/translation="MSLVAGKNIVVMGVANDRSIAWAIAQSLAAQGARLVFTYENERV
EERVRKLAGTIEGASILPCNVTDDADIDRLAENLREQFGVLHGIVHSIAFARTEELEG
MFVNTSRDGFALAHDISAYSLVAVAQKLYPLMTEGGSVMTMTYLGAERALKNYNVMGV
AKAALEASVRYLANDLGQFNIRVNAISAGPIRTLAAKGIKDFNSILKTVEEKAPLRRT
TEAAEVGDTALFLMSNLSRGITGEVIYVDSGYHIIGV"
misc_feature 577258..578022
/locus_tag="PM3016_496"
/note="Enoyl-[acyl-carrier-protein]; Region: FabI;
COG0623"
/db_xref="CDD:30968"
misc_feature 577273..578019
/locus_tag="PM3016_496"
/note="Enoyl acyl carrier protein (ACP) reductase (ENR),
divergent SDR; Region: ENR_SDR; cd05372"
/db_xref="CDD:187630"
misc_feature order(577294..577302,577312..577317,577375..577377,
577444..577452,577528..577539,577609..577611,
577684..577692,577720..577722,577741..577743,
577819..577830,577834..577845)
/locus_tag="PM3016_496"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187630"
misc_feature order(577345..577347,577450..577461,577468..577470,
577564..577584,577591..577596,577603..577608,
577615..577620,577627..577629,577639..577641,
577648..577650,577696..577701,577705..577716,
577720..577725,577732..577737,577744..577749,
577756..577761,577765..577782,577786..577791,
577870..577872,577879..577881,577897..577908,
577924..577926,577933..577938,577945..577947,
577960..577962,577966..578004,578008..578019)
/locus_tag="PM3016_496"
/note="homotetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(577450..577461,577564..577584,577591..577596,
577603..577608,577615..577620,577627..577629,
577636..577641,577648..577650,577696..577701,
577705..577713,577720..577725,577732..577737,
577744..577749,577756..577761,577765..577773,
577777..577785)
/locus_tag="PM3016_496"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(577534..577536,577540..577542,577690..577692,
577720..577722,577729..577731,577741..577743,
577840..577845,577852..577854,577861..577863)
/locus_tag="PM3016_496"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187630"
misc_feature order(577612..577614,577690..577692,577729..577731,
577741..577743)
/locus_tag="PM3016_496"
/note="active site"
/db_xref="CDD:187630"
gene 578195..579055
/locus_tag="PM3016_497"
/db_xref="GeneID:11882487"
CDS 578195..579055
/locus_tag="PM3016_497"
/codon_start=1
/transl_table=11
/product="inositol monophosphatase"
/protein_id="YP_005310614.1"
/db_xref="GI:379718483"
/db_xref="GeneID:11882487"
/translation="MSTSNIPAFAVGSKSFTAVAINTASKAGEWIQSKVGDFSSLHTK
YSAQDLVTEVDKGAEKMIRNLILTHFPGHSILGEEGVEPGPEASQRALEEASSAEYLW
IVDPLDGTTNFVHGFPFFSVSIALAYKGEVIVGVVYNPIHNELYVAEKGKGAYLKGRK
MEVSPEKTLGESLIATGFPADRDGTLPANLRGVQALSPKVRNMRVAGSAALHMAYVAA
GRLSGFYEIGLNSWDMAAGALLIEESGGKVTDTLGNPYHLGVRHVVASNGHIHDELQK
ELAAASATGY"
misc_feature 578240..578995
/locus_tag="PM3016_497"
/note="IMPase, inositol monophosphatase and related
domains. A family of Mg++ dependent phosphatases,
inhibited by lithium, many of which may act on inositol
monophosphate substrate. They dephosphorylate inositol
phosphate to generate inositol, which may be...; Region:
IMPase; cd01639"
/db_xref="CDD:30137"
misc_feature order(578324..578326,578339..578341,578357..578359,
578426..578431,578507..578524,578888..578893)
/locus_tag="PM3016_497"
/note="active site"
/db_xref="CDD:30137"
misc_feature order(578336..578338,578342..578344,578525..578530,
578534..578551,578705..578713,578717..578719,
578723..578728,578750..578755,578762..578764,
578771..578776,578795..578815,578837..578839,
578849..578860)
/locus_tag="PM3016_497"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:30137"
gene 579383..580908
/locus_tag="PM3016_r10"
/db_xref="GeneID:11882488"
rRNA 579383..580908
/locus_tag="PM3016_r10"
/product="16S ribosomal RNA"
/db_xref="GeneID:11882488"
gene 581185..584112
/locus_tag="PM3016_r11"
/db_xref="GeneID:11882489"
rRNA 581185..584112
/locus_tag="PM3016_r11"
/product="23S ribosomal RNA"
/db_xref="GeneID:11882489"
gene 584283..584398
/locus_tag="PM3016_r12"
/db_xref="GeneID:11882490"
rRNA 584283..584398
/locus_tag="PM3016_r12"
/product="5S ribosomal RNA"
/db_xref="GeneID:11882490"
gene 584429..584501
/locus_tag="PM3016_t35"
/db_xref="GeneID:11882491"
tRNA 584429..584501
/locus_tag="PM3016_t35"
/product="tRNA-Asn"
/db_xref="GeneID:11882491"
gene 584512..584600
/locus_tag="PM3016_t36"
/db_xref="GeneID:11882492"
tRNA 584512..584600
/locus_tag="PM3016_t36"
/product="tRNA-Ser"
/db_xref="GeneID:11882492"
gene 584639..584710
/locus_tag="PM3016_t37"
/db_xref="GeneID:11882493"
tRNA 584639..584710
/locus_tag="PM3016_t37"
/product="tRNA-Glu"
/db_xref="GeneID:11882493"
gene 584722..584794
/locus_tag="PM3016_t38"
/db_xref="GeneID:11882494"
tRNA 584722..584794
/locus_tag="PM3016_t38"
/product="tRNA-Val"
/db_xref="GeneID:11882494"
gene 584815..584888
/locus_tag="PM3016_t39"
/db_xref="GeneID:11882495"
tRNA 584815..584888
/locus_tag="PM3016_t39"
/product="tRNA-Met"
/db_xref="GeneID:11882495"
gene 584907..584980
/locus_tag="PM3016_t40"
/db_xref="GeneID:11882496"
tRNA 584907..584980
/locus_tag="PM3016_t40"
/product="tRNA-Asp"
/db_xref="GeneID:11882496"
gene 585051..585122
/locus_tag="PM3016_t41"
/db_xref="GeneID:11882497"
tRNA 585051..585122
/locus_tag="PM3016_t41"
/product="tRNA-Thr"
/db_xref="GeneID:11882497"
gene 585137..585209
/locus_tag="PM3016_t42"
/db_xref="GeneID:11882498"
tRNA 585137..585209
/locus_tag="PM3016_t42"
/product="tRNA-His"
/db_xref="GeneID:11882498"
gene 585223..585294
/locus_tag="PM3016_t43"
/db_xref="GeneID:11882499"
tRNA 585223..585294
/locus_tag="PM3016_t43"
/product="tRNA-Gln"
/db_xref="GeneID:11882499"
gene 585303..585375
/locus_tag="PM3016_t44"
/db_xref="GeneID:11882500"
tRNA 585303..585375
/locus_tag="PM3016_t44"
/product="tRNA-Lys"
/db_xref="GeneID:11882500"
gene 585396..585467
/locus_tag="PM3016_t45"
/db_xref="GeneID:11882501"
tRNA 585396..585467
/locus_tag="PM3016_t45"
/product="tRNA-Gly"
/db_xref="GeneID:11882501"
gene 585511..585582
/locus_tag="PM3016_t46"
/db_xref="GeneID:11882502"
tRNA 585511..585582
/locus_tag="PM3016_t46"
/product="tRNA-Gly"
/db_xref="GeneID:11882502"
gene 585610..585689
/locus_tag="PM3016_t47"
/db_xref="GeneID:11882503"
tRNA 585610..585689
/locus_tag="PM3016_t47"
/product="tRNA-Leu"
/db_xref="GeneID:11882503"
gene 585698..585771
/locus_tag="PM3016_t48"
/db_xref="GeneID:11882504"
tRNA 585698..585771
/locus_tag="PM3016_t48"
/product="tRNA-Pro"
/db_xref="GeneID:11882504"
gene 585794..585864
/locus_tag="PM3016_t49"
/db_xref="GeneID:11882505"
tRNA 585794..585864
/locus_tag="PM3016_t49"
/product="tRNA-Gly"
/db_xref="GeneID:11882505"
gene 585869..585942
/locus_tag="PM3016_t50"
/db_xref="GeneID:11882506"
tRNA 585869..585942
/locus_tag="PM3016_t50"
/product="tRNA-Arg"
/db_xref="GeneID:11882506"
gene 586130..586885
/locus_tag="PM3016_499"
/db_xref="GeneID:11882507"
CDS 586130..586885
/locus_tag="PM3016_499"
/codon_start=1
/transl_table=11
/product="dithiobiotin synthetase"
/protein_id="YP_005310615.1"
/db_xref="GI:379718484"
/db_xref="GeneID:11882507"
/translation="MGKGLFITGTDTEVGKTWVTSVLAAAAARRISLHNAGQGTVLSN
PLHLWKPIQSGSQPGDPRADSFRLLRGSGIEQTEEETVTYSLKAPLAPWMAARRAGTL
IPWEELLAEGERKLASYPRLLVEGAGGLLVPLTERYTVADLAAAMGLPLLIVARTRLG
TVNHTLLTIEAARQRGLRIAGVLLNGYPGDDDLALSETIEMIEQFGSVPVLGVFPQLE
EEPVSMEEWEAWRDQWIEIVESRIRMDEIMSFF"
misc_feature 586136..586786
/locus_tag="PM3016_499"
/note="AAA domain; Region: AAA_26; pfam13500"
/db_xref="CDD:205678"
misc_feature <586478..586774
/locus_tag="PM3016_499"
/note="Dethiobiotin synthetase (DTBS) is the penultimate
enzyme in the biotin biosynthesis pathway in Escherichia
coli and other microorganisms. The enzyme catalyzes
formation of the ureido ring of dethiobiotin from
(7R,8S)-7,8-diaminononanoic acid (DAPA) and...; Region:
DTBS; cd03109"
/db_xref="CDD:73338"
misc_feature order(586478..586483,586508..586513)
/locus_tag="PM3016_499"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:73338"
gene 586926..587918
/locus_tag="PM3016_500"
/db_xref="GeneID:11882508"
CDS 586926..587918
/locus_tag="PM3016_500"
/codon_start=1
/transl_table=11
/product="protein BioB"
/protein_id="YP_005310616.1"
/db_xref="GI:379718485"
/db_xref="GeneID:11882508"
/translation="MVTTYTNWSELAEKAIQGERLTMRESLDLLEAPDEELLRIMDAA
FQVRRHYYGKKVKLNLIINAKSGLCPEDCGYCSQSIVSKAAITKYPLLEKETLVDGAR
KAMELKVGTYCIVASGRGPTGRELDQVVEAVKEIKSTMPMKICACLGILSEEQAVKLK
EAGVDRYNHNLNTSKANFGNITTTHTYDDRVETLEKAKAAGMSPCSGCIIGMGETNEE
IVEMAYALRELDADSIPVNFLNSIPGTPLENRRDLDPRHCLKVLALMRLICPTKEIRV
AGGREVNLRSMQALALYAANSVFVGDYLTTEGQEATADHQMIEDMGFEIELCAL"
misc_feature 586932..587915
/locus_tag="PM3016_500"
/note="biotin synthase; Validated; Region: PRK06256"
/db_xref="CDD:180492"
misc_feature 587130..587696
/locus_tag="PM3016_500"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_fe 