LOCUS NC_017147 49961 bp DNA circular CON 25-MAR-2023
DEFINITION Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-030, complete
sequence.
ACCESSION NC_017147
VERSION NC_017147.1
DBLINK BioProject: PRJNA224116
BioSample: SAMD00060947
Assembly: GCF_000010905.1
KEYWORDS RefSeq.
SOURCE Acetobacter pasteurianus IFO 3283-26
ORGANISM Acetobacter pasteurianus IFO 3283-26
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales;
Acetobacteraceae; Acetobacter.
REFERENCE 1
AUTHORS Azuma,Y., Hosoyama,A., Matsutani,M., Furuya,N., Horikawa,H.,
Harada,T., Hirakawa,H., Kuhara,S., Matsushita,K., Fujita,N. and
Shirai,M.
TITLE Whole-genome analyses reveal genetic instability of Acetobacter
pasteurianus
JOURNAL Nucleic Acids Res 37 (17), 5768-5783 (2009)
PUBMED 19638423
REMARK DOI:10.1093/nar/gkp612
REFERENCE 2 (bases 1 to 49961)
AUTHORS Azuma,Y. and Hosoyama,A.
CONSRTM Acetobacter pasteurianus genome sequencing consortium
TITLE Direct Submission
JOURNAL Submitted (06-APR-2009) Contact:Yoshinao Azuma Yamaguchi University
School of Medicine, Department of Microbiology and Immunology;
Minami-Kogushi 1-1-1, Ube, Yamaguchi 755-8505, Japan URL
:http://www.bio.nite.go.jp/dogan/Top
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
AP011152.1.
This work was done by Acetobacter pasteurianus genome sequencing
consortium including Department of Microbiology and Immunology,
Yamaguchi University School of Medicine, National Institute of
Technology and Evaluation, Genetic Resources Technology, Faculty of
Agriculture, Kyushu University, Department of Biological Chemistry,
Faculty of Agriculture, Yamaguchi University and Mizkan Group
Corporation Central Research Institute.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 03/25/2023 11:17:26
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.4
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 3,129
CDSs (total) :: 3,053
Genes (coding) :: 2,942
CDSs (with protein) :: 2,942
Genes (RNA) :: 76
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 57
ncRNAs :: 4
Pseudo Genes (total) :: 111
CDSs (without protein) :: 111
Pseudo Genes (ambiguous residues) :: 0 of 111
Pseudo Genes (frameshifted) :: 30 of 111
Pseudo Genes (incomplete) :: 91 of 111
Pseudo Genes (internal stop) :: 15 of 111
Pseudo Genes (multiple problems) :: 22 of 111
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..49961
/organism="Acetobacter pasteurianus IFO 3283-26"
/mol_type="genomic DNA"
/strain="IFO 3283"
/sub_strain="IFO 3283-26"
/sub_species="pasteurianus"
/db_xref="NBRC:105189"
/db_xref="taxon:634456"
/plasmid="pAPA26-030"
/note="strain coidentity: IFO 3283 = NBRC 3283"
gene join(49935..49961,1..300)
/locus_tag="APA26_RS15420"
CDS join(49935..49961,1..300)
/locus_tag="APA26_RS15420"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="ribbon-helix-helix domain-containing protein"
/protein_id="WP_019089445.1"
/translation="MSKRPSLGSIGLDLDDIEAKPASGQKVAAFHEQALTQPPQDKPG
AYVKDKAVNMTVYLLPHDHKRLKQLAVEHDTTIQALVMDGLDVILKDNGQEPLTRWKT
RRKPRG"
gene 510..1070
/locus_tag="APA26_RS15425"
/old_locus_tag="APA26_43530"
CDS 510..1070
/locus_tag="APA26_RS15425"
/old_locus_tag="APA26_43530"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_017184234.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_041633465.1"
/translation="MAGQIVAYVRVSSADQNTDRQMFDGMTVDKTFTDKCSGGTRNRP
ALTEMLGYVREGDTIVCHSIDRLARDLGDLMHLVQTMTRRGVGVRFMKEGLTFTGEDS
PMQDLMMHIFGAVAQFERALIHERQKEGQIAARAKGKVPGRKPKLSPEQVTELYNRVA
THEPKAQIARDFGISRETLYAYLKAA"
gene 1194..1433
/locus_tag="APA26_RS15430"
/old_locus_tag="APA26_43540"
CDS 1194..1433
/locus_tag="APA26_RS15430"
/old_locus_tag="APA26_43540"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013105051.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ribbon-helix-helix domain-containing protein"
/protein_id="WP_012813361.1"
/translation="MSTTRWNIAVSSEVDQSVRMFLAANGGGRKGDLSRFIEDAVRSY
LLEQAVEQAKAASEDMSEAELADLVNEAVQWARGH"
gene 1433..1855
/locus_tag="APA26_RS15435"
/old_locus_tag="APA26_43550"
CDS 1433..1855
/locus_tag="APA26_RS15435"
/old_locus_tag="APA26_43550"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813362.1"
/GO_function="GO:0004521 - endoribonuclease activity
[Evidence IEA]"
/GO_function="GO:0005515 - protein binding [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="putative toxin-antitoxin system toxin component,
PIN family"
/protein_id="WP_041633467.1"
/translation="MRVVLDTNILVSALIYPRGAPDAIYRAWRAHRFDLVTSTTQLEE
LRRVSRYPKLRSILPPHRVGAMINNMRKASVAEQLPTLPDDVTINDRDDVFLLTMVLA
FDADYLVTGDHRAGLLEKGRFQRARIVTPVDFCSIALD"
gene complement(1949..2206)
/locus_tag="APA26_RS15440"
/old_locus_tag="APA26_43560"
CDS complement(1949..2206)
/locus_tag="APA26_RS15440"
/old_locus_tag="APA26_43560"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813363.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="conjugal transfer protein TraD"
/protein_id="WP_012813363.1"
/translation="MRDWAKARRERTHHLIELGGLVQKARLVDLTDDDRATLLGAFLD
IAGQLQGSNVTTPVDLKTRWRRAGLHAFDAEKEHVERKEQP"
gene complement(2253..3463)
/locus_tag="APA26_RS15445"
/old_locus_tag="APA26_43570"
CDS complement(join(2253..3178,3178..3463))
/locus_tag="APA26_RS15445"
/old_locus_tag="APA26_43570"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076612078.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
/protein_id="WP_148194255.1"
/translation="MSNKSKRFPPEFRERAARMVLEEEKNHPSRWSAVMMIAPKLDIH
PDTLSKWTRLHERANAPAVSELPDREKIRQLERENRELRQANDILRKASAYFCPGGAR
PHLQAMTRFIEEHRQTYGVGSICRVLSIAPSAYYATVARQKNPCVRSQKDKELCDDIR
RVWNNNFCVYGARKVWHQLKREGVDVARCTVERLMRRMGLKGVIRGKGVRTTRPDPQR
PCPQDLVQRQFHAPAPNRLWVSDFTYVSTWQGFVYVAFIIDVFARVIVGWRVSSTAHT
DFVLDALEQALCQRRPEGKVTHHSDRGCQYVSILYTQRLAEAGLVASVGSVGDSYDNA
LAETINGLYKTELIYRQGPWKNREAVELATLKWVDWFNNRRLLSSIGNIPPAEAEARF
YAQQKSHALAA"
misc_feature complement(3069..3185)
/locus_tag="APA26_RS15445"
/old_locus_tag="APA26_43570"
/inference="COORDINATES: nucleotide
motif:Rfam:14.4:RF01497"
/inference="COORDINATES: profile:INFERNAL:1.1.4"
/note="AL1L pseudoknot; Derived by automated computational
analysis using gene prediction method: cmsearch."
/db_xref="RFAM:RF01497"
gene 3462..3941
/locus_tag="APA26_RS15455"
/old_locus_tag="APA26_43590"
CDS 3462..3941
/locus_tag="APA26_RS15455"
/old_locus_tag="APA26_43590"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813366.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF6118 family protein"
/protein_id="WP_012813366.1"
/translation="MNPSYLSGRSVSTKPGAIQPASRRLEGVFEKAIGEVRKERQALA
SIVGEANNRRDQWFYLIFIGLMAFLFGVGVAPLLFNHITWKNFDERVASFIVGGQDRW
ESGAAMMRDARPEQWNSFMWEDRLVQDNMPKIRDCRIAATQVGQPKPCVITIKPDAQ"
gene complement(4027..6345)
/locus_tag="APA26_RS15460"
/old_locus_tag="APA26_43600"
CDS complement(4027..6345)
/locus_tag="APA26_RS15460"
/old_locus_tag="APA26_43600"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813367.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Hint domain-containing protein"
/protein_id="WP_012813367.1"
/translation="MDYWNDTSVSNGETLNDITLTSANDTHDRLFVSSGGVANNVHVG
GGAYAYIYGGTISTITVSSGGLVHMVSGGTVKDLHVLSGGIGYIPSGTLSGSVIDNGG
LLEVLVSGSATSVTVENNGVVKIRSGGLINASNILSGGSIIVSSGGQSIGTVISSGGS
LTFTGGGSGSYTSLLAGGTLNIGSGTTYDNQHTTSLTATSGAQINVLSGGVLTDADAA
AFGNIVVSKGGRGQDIIISSGGGLGVAGIASDTTVNNGGVIEINSGGVSNNNHVNNGG
KIYADSGSILGLTSISSGGSAIVASGATISDVVTIQDGGTATIWNNTSGTIDLSGDTN
HGLTISGLESGGTVSTVISGWSGSKPGNSDSIDLPGVSADGASYAYPSDDQVVVTLAN
GNTITLNIPGVKNTGFVLSDDHHGGASAEVCFLSGSMIRTSEGDVAVEDIQIGDEVIA
FDWRNDEDVVRQVVWVGKARATVRPDLPDDEAGWPVRILKDAIADGVPYKDMLITAEH
CLFFRDRFVPVRMLVNGVSIFYDKSITSYDYYHVETEQHSVITADGMLTESYLDTGNR
SSFRQEGKIATLRGAVKNWADHAGAPLGVERSFVEPLFRALQWRENSVVGTKISTTKI
ETTTDPDLHLITQTGAVIRPMRKTAHHYSFMLPPNTESVRIVSRSSRPSDVIGPFVDD
RRYMGVAVADVQLQCAKQQFDITSHLQDEKPSGWHDTDWTDCAWTNGNAELPLGDHLT
HGKMGILSMTIRAAGPYLLNTKPNSDMKKHSA"
gene complement(6764..7560)
/locus_tag="APA26_RS15465"
CDS complement(join(6764..7221,7221..7560))
/locus_tag="APA26_RS15465"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611628.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS5 family transposase"
/protein_id="WP_259286392.1"
/translation="MEEGDRTGTFTDETWAIWEPLIEEVRPRGKTPPHDLRRTIAAIF
WRHENGAKWRSIPAELGPWWRAAQLFIRWAKLGVWERLLALVQEQQGVAFGMTFLDGT
NIRAHHKAAGAPKKGASFEERDHREALGRSRGGYGTKVCVIADGHGKAFGFALAPGQA
HELPLAPAMLDSLPATPLWVVADKGYASNAMRERIWDMGARPAIPAKRRDGPVACPKW
AYRCRHLVENLWARLKEWRAVATRYEKTATSFLVVIHIAAAADWIKP"
gene 7701..7907
/locus_tag="APA26_RS16345"
/old_locus_tag="APA26_43640"
CDS 7701..7907
/locus_tag="APA26_RS16345"
/old_locus_tag="APA26_43640"
/inference="COORDINATES: protein motif:HMM:NF012464.2"
/GO_function="GO:0000150 - DNA strand exchange activity
[Evidence IEA]"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006310 - DNA recombination [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_259286393.1"
/translation="MRRIGYARVSTIGQTLDMQIQTLNSFECHKVFREKASGADVERV
ELRRLIKNLCHGDTVVIPPFLVGH"
gene complement(7916..9003)
/locus_tag="APA26_RS15470"
/old_locus_tag="APA26_43650"
CDS complement(join(7916..8742,8742..9003))
/locus_tag="APA26_RS15470"
/old_locus_tag="APA26_43650"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012476889.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
/protein_id="WP_088365138.1"
/translation="MKSGRFTDAQIMGVIRQAEGGVPVPDLCREHGISNATFYRWRAK
YGGMDASMISQMKALEEENRRLKRMYADLSMQTDILKEALGKKLKRPAQRRELAAQAV
AHHGVSIALACRIFGISETCFRYRPRLAAENDRIAALLVGLTQAHRRWGFGLCFLYLR
NVQGQLWNHKRVYRIYRELEFNLRIKPRRRLVREKPEKLSVPALPNTVWSMDFMADRL
LDGRAFRLLNILDEFNREGLAIEVDFSLPACRVVRCLEQVMEWRGRPEAIRMDNGPEY
VSHTLVSWAEKQGITLIYTQPGNPQQNAYIERYNRTVRQEWLEQYLFESIQDVQEVAT
QWLWTYNHDRPNMGNSGLTPAQKLKTAA"
gene 9078..9491
/locus_tag="APA26_RS15480"
/old_locus_tag="APA26_43670"
CDS 9078..9491
/locus_tag="APA26_RS15480"
/old_locus_tag="APA26_43670"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003626756.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_167316222.1"
/translation="MVTRIDRLARSTFDLFAIVKEIIQKGAQFYSLSEPWADTTTSTG
RLMLAVLGGLADVERDLIRTRTAEGRARAVQLGVKMGRPTKIADIQRQDIIKRRQNGE
FLKDIAEDFGISVGTVSRITTGADSHKSRKNKKGF"
gene complement(9725..10318)
/locus_tag="APA26_RS15485"
/old_locus_tag="APA26_43680"
CDS complement(9725..10318)
/locus_tag="APA26_RS15485"
/old_locus_tag="APA26_43680"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003630649.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_003630649.1"
/translation="MTHILIGYARCSTDKQDLAVQKQELLKLGVSADRIYTDKGFTGT
NRDRPGLDQALAAVRSGDTLVVPKLDRLARSVPDARAIGDSLAARGVKLQLGTSVHDP
SDPMGKLFFNILATFAEFEADLIKLRTREGMAVARAKGKLRGKKPKLSDRQQKELRRM
YDTGDYSISDLADLFSISRPTVYRTLGRQPVTSVLAA"
gene 10467..11936
/locus_tag="APA26_RS15490"
/old_locus_tag="APA26_43690"
CDS 10467..11936
/locus_tag="APA26_RS15490"
/old_locus_tag="APA26_43690"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003630651.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Mu transposase C-terminal domain-containing
protein"
/protein_id="WP_250698468.1"
/translation="MADDRVLGTDSTEVAMRMAVLRPYLIDNVPLTKIAVDAAIPIRT
VRRWIARYRLSGPAGLMRPTRPDAGTRTFPKEMVELIEGMALLKPQSSIATIHRRIVM
LAAEQGWRKPSYGSVRSIVREINPAILTLAHEGSAAFRDKYELVHRHRASRPNATWQA
DHTQLDILILDAGGKAARPWLTTVMDDYSRVVAGYMVMLGAPSALNTSLALRQAIWRK
ADPMWPVCGIPDVLHVDHGSDFTSLHLEQASADLHFRLIYSGVARPQGRGKIERLFRT
INTELLPELPGNLRNGKPSSPPRLSLAELDATIGDYIVSTYNTRPHSTIGVPPAKAWC
GDGWLPRMPETVDELDTLLVMVARPRTVHRDGIRFEGLRYFDPTLAAYVGEPVMIRYD
PRDMGEIRIFHRNTFLCRAVSADHAGDSITLKDIQTARIAHRRHLRNQIAERKARVAD
FFPSPVFRPTQPAVPVTLSGTEAKGRQKGRRLRIYSEGD"
gene 11936..12760
/locus_tag="APA26_RS15495"
/old_locus_tag="APA26_43700"
CDS 11936..12760
/locus_tag="APA26_RS15495"
/old_locus_tag="APA26_43700"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813374.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="AAA family ATPase"
/protein_id="WP_012813374.1"
/translation="MRTARTTSFIATQEHRRFSEFADAVRKHRYIGLCHGPAGVGKTL
SARRYTHWHVVGKTLEEWGPRGSDQAKVNAHLAKSRAIFFTPTVSCSVQELRHDVPAL
IACAEICIDDHVRPHIQGQARIIDHTTRYIELLIVDEAERLSMTALEWLRDLFDRQGI
SLIFIGMPGIDKRMARYPQLFSRVGFSHHYRPLQEQELTFVLTRRWRDLGLSLDGADF
TDAQAVAAIVRLTGGNFRLLHRLFVQIERIMRLNELTVITEDVVEAARSTLVIGVT"
gene 12838..13455
/locus_tag="APA26_RS15500"
/old_locus_tag="APA26_43710"
CDS 12838..13455
/locus_tag="APA26_RS15500"
/old_locus_tag="APA26_43710"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_006559417.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_041633471.1"
/translation="MGQRAVIYCRVSTADQSCARQKDELKRFAERAGYEVLDVFMETG
SGVRVDRAERRNVMALAQAREIDAILVTELSRWGRSTIDLISTLQELESYRVSLIAIT
GMAFDLATPHGRMLATVLAGIAEFERDLISERVKSGLAAAKARGKVLGRQKGERPKSD
RLAPKVLALVAEKRSYRWIARDLGISKNTVAAIVQRDQVRPSLPS"
gene 13498..14133
/locus_tag="APA26_RS15505"
/old_locus_tag="APA26_43720"
CDS 13498..14133
/locus_tag="APA26_RS15505"
/old_locus_tag="APA26_43720"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_006559416.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="AAA family ATPase"
/protein_id="WP_012813376.1"
/translation="MKVLAVLSQKGGVGKTTLATCLAVAAEQAGKVAAIIDLDPQATA
SFWKDVRQLDTPAVASIQPIRLPAMLKACADAGTDLVIIDGAAVARDVAYEAARHADF
VLIPTKTAVFDTMSMTHTLDVVRQLDKAFAVVLTFVPPQGQETGDAIKAVTELGATVC
PVTVGNRKAFFRAQAAGQAVQEFETHGPAANEIKRLYEYTDIQLYKNREVV"
gene 14160..14411
/locus_tag="APA26_RS15510"
/old_locus_tag="APA26_43730"
CDS 14160..14411
/locus_tag="APA26_RS15510"
/old_locus_tag="APA26_43730"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_006559415.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ribbon-helix-helix domain-containing protein"
/protein_id="WP_012813377.1"
/translation="MLDRAKGSGEAMPTPSPKPDISSRKPTLNGRKGTKLIGGHFSPE
VSTQLRIIAAEEGTTVQSLLGEALDDLFVKKGRIRIVSG"
gene complement(14447..15547)
/locus_tag="APA26_RS15515"
/old_locus_tag="APA26_43740"
CDS complement(14447..15547)
/locus_tag="APA26_RS15515"
/old_locus_tag="APA26_43740"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010511350.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="replication initiator protein A"
/protein_id="WP_012813378.1"
/translation="MKPRIKPDRQRNPELALIVSETPNVDGRSVLLPERYPTPDLFIC
DVLDAIPKDDMASMEHPIFSLATKPDRRIFRYEHNGNTVEIVPSIKGLATIHDKDILI
YCISQLIAKMNQGELPNRTLHLTARDLLVWTNRQTDGDGYKRLRSAFERLAGTRITTN
IKADGEEVTEGFGLINEWRIVRKTNSGQMSEIKVTLSEWLFRMIEGRSVLTLHRDYFR
LRKPLERRIYELARKHCGAQEKWVVSIEILQKKTGASSHIRVFRSMLRDLAINNHLPD
YAVEINSNTVTFRNRETMDTVKVIEPKLQKPFVDPEGFHDARGVAPGYDVYALYDEWV
SWWNDSGQPELQNPSAAFVGFCRNRHKRNPIR"
gene 16473..16610
/locus_tag="APA26_RS16350"
CDS 16473..16610
/locus_tag="APA26_RS16350"
/inference="COORDINATES: protein motif:HMM:NF025088.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF4160 domain-containing protein"
/protein_id="WP_250698467.1"
/translation="MIEIGRKARLIWAGGMKDKVIQEALVIVQDHAEMLAEAWETIHG
E"
gene 16600..17007
/locus_tag="APA26_RS15520"
/old_locus_tag="APA26_43750"
CDS 16600..17007
/locus_tag="APA26_RS15520"
/old_locus_tag="APA26_43750"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_006560442.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF2442 domain-containing protein"
/protein_id="WP_012813379.1"
/translation="MANDMNYQTAREADTLHRATVPHAVSARLIRARRALHVTLSNGV
EMSVPVDLLQDLHGASLNDLAEIEITPLGNDLHWPRLDADVLVEGLIHGIYGSRSWMA
AQMGRVGGSSASPAKAAAARRNGAKGGRPRNVA"
gene 17110..17337
/locus_tag="APA26_RS15525"
/old_locus_tag="APA26_43760"
CDS 17110..17337
/locus_tag="APA26_RS15525"
/old_locus_tag="APA26_43760"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014106734.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="WP_012813380.1"
/translation="MVELKVRKFGNSLGVVLPKEVISRLNTQDGAPLYLTEAPDGGYR
LVPYDPDFESKMTKAEDIMRRYRDTLHVLAQ"
gene 17334..17729
/locus_tag="APA26_RS15530"
/old_locus_tag="APA26_43770"
CDS 17334..17729
/locus_tag="APA26_RS15530"
/old_locus_tag="APA26_43770"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019088713.1"
/GO_function="GO:0016301 - kinase activity [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system death-on-curing
family toxin"
/protein_id="WP_012813381.1"
/translation="MTVFVWIDEREALILHDRLLGLHGGASGLRDAGLLKSALARPQQ
HAAYADPLDPVHLAAVYTAGIVKNHPFIDGNKRTGFVLGVLFLELNGYRFTAAQEDAA
NAVLALAAGQMDELGYAAFLTANVASERV"
gene 17857..18102
/locus_tag="APA26_RS15535"
/old_locus_tag="APA26_43780"
CDS 17857..18102
/locus_tag="APA26_RS15535"
/old_locus_tag="APA26_43780"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_006560453.1"
/GO_process="GO:0008219 - cell death [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system
prevent-host-death family antitoxin"
/protein_id="WP_006560453.1"
/translation="MRTVNIHEAKTHLSRLIDAAMKGESFIIAKAGRPMVRVSPITAP
EELQQRRLGFLAGKIRVPEDFDRMGQDDIVSLFDGPA"
gene 18099..18485
/locus_tag="APA26_RS15540"
/old_locus_tag="APA26_43790"
CDS 18099..18485
/locus_tag="APA26_RS15540"
/old_locus_tag="APA26_43790"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_006560454.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system VapC family
toxin"
/protein_id="WP_012813382.1"
/translation="MRLLLDTHLLLWAAGEPDKLSARARTLMEDPGNDLVFSAASLWE
ITIKTGLGRADFQVDPHLLRRGLIENGYEELPITSQHALAVGQLPDVHRDPFDRILVA
QATVEGLLLLTHDPLVKAYPGPIEAV"
gene 18511..18687
/locus_tag="APA26_RS16355"
/old_locus_tag="APA26_43800"
CDS 18511..18687
/locus_tag="APA26_RS16355"
/old_locus_tag="APA26_43800"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813383.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="CopG family antitoxin"
/protein_id="WP_012813383.1"
/translation="MPSLHSDEAAEDFVATVDLTRYDLSGFKPMRCEIEPKAAALNMR
LPASLLETDVAQTR"
gene 18772..19026
/locus_tag="APA26_RS15545"
/old_locus_tag="APA26_43810"
CDS 18772..19026
/locus_tag="APA26_RS15545"
/old_locus_tag="APA26_43810"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_007396253.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_012813384.1"
/translation="MSRTYHHSRKYGRNHRWANQPDRCGYGGSREASESPNWYSHLHD
IRPGRHHDRHVARLIIKGDLDPVEAVFPYTGTRRPHEYYW"
gene complement(19122..19292)
/locus_tag="APA26_RS16685"
/old_locus_tag="APA26_43820"
CDS complement(19122..19292)
/locus_tag="APA26_RS16685"
/old_locus_tag="APA26_43820"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010665984.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_162010041.1"
/translation="MTDLSDERAAKRDAIRKASNSTKPTVPADQVLALLDAELARIQA
AIDTLPTPRPTD"
gene complement(19295..19522)
/locus_tag="APA26_RS15550"
/old_locus_tag="APA26_43830"
CDS complement(19295..19522)
/locus_tag="APA26_RS15550"
/old_locus_tag="APA26_43830"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_228518597.1"
/translation="MTDTDAFILLNEAVNLEIAETAANLLREGVPEKIVADFVIAYSQ
TQRAELLDNVCDYAWRISAPVAATKHEAMKT"
gene complement(19731..19970)
/locus_tag="APA26_RS15555"
/old_locus_tag="APA26_43840"
CDS complement(19731..19970)
/locus_tag="APA26_RS15555"
/old_locus_tag="APA26_43840"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_007396251.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="conjugal transfer protein TraD"
/protein_id="WP_012813387.1"
/translation="MRDWAKARRERTHHLIELGGLVQKAGLVDLTDDDRATLLGAFLD
IAGQLQEGNETTPDDLKSRWRRAGLHAFDRHREHD"
gene complement(20035..20394)
/locus_tag="APA26_RS15560"
/old_locus_tag="APA26_43850"
CDS complement(20035..20394)
/locus_tag="APA26_RS15560"
/old_locus_tag="APA26_43850"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813388.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="conjugal transfer protein TraD"
/protein_id="WP_012813388.1"
/translation="MSDAVLACVIKYATDQKNKGSIMRKPRDIDAELEELQKRARALK
AKRIVQFGELVEATGADTLSIEALAGVLLAAVEQADSKPEAVARWTERGAAFFQAGGK
KGSRKGTGNDQNGSAGA"
gene 20491..23577
/gene="traA"
/locus_tag="APA26_RS15565"
/old_locus_tag="APA26_43860"
CDS 20491..23577
/gene="traA"
/locus_tag="APA26_RS15565"
/old_locus_tag="APA26_43860"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019088721.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Ti-type conjugative transfer relaxase TraA"
/protein_id="WP_012813389.1"
/translation="MAIYHLHAKVISRATGRSAVAAAAYRAASRLHDVRLDRDHDFSN
KSGVVHSEILLPDGAPERFLDRATLWNEVEAIEKRKDAQLAREVEFSIPREMTQAQGI
ALARDFVREQFVERGMVADLNVHWDIGEDGQAKPHAHVMLSTRSVDENGFGAKERSWN
DKELLLTWRERWASLANERLAELDLDVRIDHRSFAAQGIDLEPQNKIGPAGMRREERG
EDAERVADHLEIARRNGERLLAEPHVALEALTRQQSTFTRQDMARFVDRQTVDAEQFT
AVMVRVEACPELVALGKDGHGRERFSTRAMIGVEQRLEEASLAMGQSQGHAVPLAVRR
AAMQHSGLGEEQALAVGEVTKSRDLSVVVGYAGTGKSTMLGVARAAWEEAGYRVRGAA
LSGIAAEGLEAGSGIESRTLASLERAWERGFDLLERGDVLVVDEAGMVGSRQMERVLS
VAREAGAKVVLVGDPEQLQAIEAGGAFRAVAERVGSVEITTVRRQREGWQQAATKELA
TGRTEQALGRYEAAGLVRGHDTLEEARAGVVAGWEEARQAAPEESQIMLAHRRVDVRA
LNEAAREIRRDAGELGDDVLVPTAQGERVFANGERVYFLRNDRELGVKNGTLGTVRSI
VGSAEAGDLAMSVQLDGPGGAGTGRVVSVSVAEYDALDHGYAATIHKSQGVTVDRAHV
LATGSMDRHGAYVALSRHRESVSVHWGRDDVGDRDGLVRRLSCERLKDTTLDYPHVRD
RDTGFARRRGLHVPESEIVVEREKAASGPRQDRQAEGVPMPDPASAQQKRGMFDGLDL
SVRPGRCTTEKDVSAGLDAGAGKGESGIEREAPVSPFAGLRLPRVQREQVPAGLDGFV
PGSDPLHQAVERYARAWVDAERMVRQELPVLEHQKKALLEAGRDLERIRRGGEADLRA
ALKHQPEIRQALYGLEGPARARKLVEGLEHEDRVRKRPDLRAARFVKTWDGLSREQQG
VAFKELKRDAQLESILREKSRELGIRKGSTLDHGLHPHQREQALSRSRSRGMDMGM"
gene 23643..23894
/locus_tag="APA26_RS15570"
/old_locus_tag="APA26_43870"
CDS 23643..23894
/locus_tag="APA26_RS15570"
/old_locus_tag="APA26_43870"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019087318.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid stabilization protein"
/protein_id="WP_041633476.1"
/translation="MSSVVIRNLPEETHRALKAQAMLHGRSTEAEIRTILEAAVRPPQ
RVRLGSLLASIGREAGVREQDVTALQVRDQTPAEPLSFE"
gene 23891..24313
/locus_tag="APA26_RS15575"
/old_locus_tag="APA26_43880"
CDS 23891..24313
/locus_tag="APA26_RS15575"
/old_locus_tag="APA26_43880"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813391.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system VapC family
toxin"
/protein_id="WP_012813391.1"
/translation="MILLDTNVISEPWKPVPEPRVLAWIDRQAIETLFLSAVTVAELR
FGIGAMPAGRRRSVLHERLEQEVLPLFAGRVLSFDLAASQAYAELMVRARSEGRAIGK
ADGYIAATAASRGYVVASRDVSPFEAAGVRVLNPWEDT"
gene 24313..24540
/locus_tag="APA26_RS15580"
/old_locus_tag="APA26_43890"
CDS 24313..24540
/locus_tag="APA26_RS15580"
/old_locus_tag="APA26_43890"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813392.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF6118 family protein"
/protein_id="WP_012813392.1"
/translation="MSETDPAARAFEDLCAEMTVLRRSVEALPQAWRDNRPPDYTEDL
ARVVKAMNAVGMHMKAIDADFSHLRQFRVIL"
gene complement(24683..26068)
/locus_tag="APA26_RS15585"
/old_locus_tag="APA26_43900"
CDS complement(24683..26068)
/locus_tag="APA26_RS15585"
/old_locus_tag="APA26_43900"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012812390.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS1380-like element IS1380A family transposase"
/protein_id="WP_012813107.1"
/translation="MQTECSAGAYEFPASCGRRVVARFDGGRMSSDGGVILVKQADDI
LGLSRRFAACFRDKRHPAFVEYRVEDLVRQRIMGLALGYEDLNDHDALRHDLIFGLAS
GRLSGGRANCAALAGKSTLNRLERSGHKADRYCRIIADHEALATLFVTLFLDQHERAP
ARIVLDVDATDDRIHGHQEGRAFHGYYGHNCYLPLYIFCGDHLLSATLRTADRDPGNE
ALADISRIVEQIRNRWPRVRILVRGDSGFARDSLMTWCEDNHVDFLFGLAGNTRLYDR
IASLSAEVRDEAATTGRAARGFASFDWITKDSWTRRRRVVAKAEWRHGNRYHRFIVTT
LPQGMSDPRHLYEQIYCARGDMENRIKECQMDLFSDRTSSHTIRANQLRLWFSAAAYV
LLTALQRLALGQTSLETATCGTIRARLLKIATRVTLSVRRIVLSMPDMFPCQHEFALA
HARLRRLRQAI"
gene complement(26126..26365)
/locus_tag="APA26_RS15590"
/old_locus_tag="APA26_43910"
CDS complement(26126..26365)
/locus_tag="APA26_RS15590"
/old_locus_tag="APA26_43910"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010512086.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_012813393.1"
/translation="MLVGYMRVSSADERQSVDLQRDALIAAGVDARHIHSDKASGARD
DRPGLKTCLAWLKEGDTLVVWKLDAEISQKGCTSG"
gene complement(26520..26993)
/locus_tag="APA26_RS15595"
/old_locus_tag="APA26_43920"
CDS complement(26520..26993)
/locus_tag="APA26_RS15595"
/old_locus_tag="APA26_43920"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813394.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ParA family protein"
/protein_id="WP_012813394.1"
/translation="MKTGKIVVISKLKGGSGATTLTRELATSALDAGKSVAIIDLDAQ
GSLTNWWNRRTAATPDAGPKLIQLSPENLPDMTEKLRGKFDLVLIDTPPSTHDALRKI
ASKADMAVIPTKPTPDDLDAVGPVIRQLRGVVPMAFVISQITNKGSVHRTGTDIR"
gene complement(27348..27875)
/locus_tag="APA26_RS16360"
CDS complement(27348..27875)
/locus_tag="APA26_RS16360"
/inference="COORDINATES: protein motif:HMM:NF025107.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
/protein_id="WP_082179792.1"
/translation="MPRLFERLLVVTSFASTLWTLTQSRQITGKTHLVLQALASFQGY
RGLFPSHESIASRSGCSVRTVIRALEAAYRLGIVTRTRQRQRVSGRVCNGVNRYRLII
KPLEQARAAAVHYTQQLREALSRRKQAFLSKCQNDSEPHIQSNFFNTEPLSGAGMSHN
DLIRWCESIGYRGST"
gene complement(28082..28381)
/locus_tag="APA26_RS15600"
/old_locus_tag="APA26_43930"
CDS complement(28082..28381)
/locus_tag="APA26_RS15600"
/old_locus_tag="APA26_43930"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813395.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="WP_012813395.1"
/translation="MAEQMNIADELLTSMEQAVGIAAGTVKPGRIWTPPEINVADIRK
RTGLSQVRFAARYGFSAAAVRDWEQKRRTPEKAARTLLMLIDKEPQAVERVLVGV"
gene complement(28383..28721)
/locus_tag="APA26_RS15605"
/old_locus_tag="APA26_43940"
CDS complement(28383..28721)
/locus_tag="APA26_RS15605"
/old_locus_tag="APA26_43940"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813396.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system RelE/ParE family
toxin"
/protein_id="WP_012813396.1"
/translation="MHSVIETPIFTKRADALLSREERAELIRLLAENPRQGDVIPGTG
GVRKLRFAGSGRGKRGGVRVIWYVASDRIPVYALLIYGKNEQDDLTPDQKKAMASMAE
RIKKSDQGGT"
gene 28904..29188
/locus_tag="APA26_RS15610"
/old_locus_tag="APA26_43950"
CDS 28904..29188
/locus_tag="APA26_RS15610"
/old_locus_tag="APA26_43950"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019089638.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_041633485.1"
/translation="MSKSSSPYVRRLLWIVACFVGGFALLCVSGWALVVNGSTQDSAM
VTVLRWLPVATGAITVAAGFFLLFLPVPEDPEDFFLPDDTDGELERTDGK"
gene complement(29249..30058)
/locus_tag="APA26_RS15615"
/old_locus_tag="APA26_43960"
CDS complement(29249..30058)
/locus_tag="APA26_RS15615"
/old_locus_tag="APA26_43960"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813398.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase"
/protein_id="WP_012813398.1"
/translation="MTEHLTKRWQTLPATPAPLASFKGQHAPINGCSLYYTEGGTGDD
VIIMLHGGMANSDYWGIQAAYLAKTHRVILVDSRGHGRSTLGDKPLSYAQMADDIIHL
MNHLEIPNASLVGWSDGGVQSIILASEHPDRIKRIFAYGPHMSASGLNLACSGNKVVN
AFVKRATEDYRELSPTPDKFDVFSKTLRGLWKWEHDAEFTEDRLNAIRCPAWVVGGDR
DEMIHRAHLEYLVAHIPDSSYMILPETSHFAFLQAPLLFNEALADFLSVKA"
gene complement(30133..31220)
/locus_tag="APA26_RS15620"
/old_locus_tag="APA26_43970"
CDS complement(join(30133..30959,30959..31220))
/locus_tag="APA26_RS15620"
/old_locus_tag="APA26_43970"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012476889.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
/protein_id="WP_148194248.1"
/translation="MKSDRFSDAQIMGVIRQAEGGVPVPDLCREHGISNATFYRWRAK
YGGMDASMISQMKALEEENRRLKRMYADLSMQTDILKEALGKKLKRPAQRRELAAQAV
AHHGVSIALACRIFGISETCFRYRPRLAAENDRIADLLVGLTQAHRRWGFGLCFLYLR
NVQGHVWNHKRVYRIYRELELNLRIKPRRRLVREKPEKLSVPALPNTVWSMDFMADRL
LDGRAFRLLNILDEFNREGLAIEVDFSLPACRVVRCLEQVMEWRGRPEAIRMDNGPEY
VSHTLVSWAEKQGITLIYTQPGNPQQNAYIERYNRTVRQEWLEQYLFESIQDVQEVAT
QWLWTYNHDRPNMGNSGLTPAQKLKTAA"
gene complement(31330..32517)
/locus_tag="APA26_RS15630"
/old_locus_tag="APA26_43990"
CDS complement(31330..32517)
/locus_tag="APA26_RS15630"
/old_locus_tag="APA26_43990"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019088728.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="GIY-YIG nuclease family protein"
/protein_id="WP_012813399.1"
/translation="MAELSDEELLAELGVSLETKKKAALTAEEERIIAGFEDICRFYE
EHGHAPAHGEDRDIFERLYAVRLDRIRALEKCRSLLAQRDPHGLLSVSGKEAESPDPD
TLDDDALLAELGIEAEPAAESITVLKHVKSRAEVRAAEEIASREPCKDFETFRPFFAQ
VQEDLKSGVRETRPFGQEAGIRQGEFFILKGQMVYVAHVGEEFETEYGRRDSRLRVIY
DNGTESDVLLRSLQRALYKDEAGRRITDPTVGPLFGTTVEPDDLESGTIYVLRSLSDN
PYIAQHRNLIHKIGVTGGDVKKRIANAKHDATYLLADVEVVATYKLFNINRTKLEKIF
HRVLAPAQIDLTIQDRFGHPVHPKEWFLVPINIVSQIVDKISDGSIDGFIYDPKTVGL
VKA"
gene complement(32510..34594)
/locus_tag="APA26_RS15635"
/old_locus_tag="APA26_44000"
CDS complement(32510..34594)
/locus_tag="APA26_RS15635"
/old_locus_tag="APA26_44000"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019088727.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DEAD/DEAH box helicase"
/protein_id="WP_012813400.1"
/translation="MTINPVIPAVSLRTGQTGLSARTNELGMRPMQEAVYEKRGEQYL
LIKSPPASGKSRALMFVALDKLAHQGVKKALIVVPERSIGGSFMNEPLSKFGFWADWI
VQPKWNLCNAPGSDEGQVARSKVKAVGEFLKSKDQTLVCTHATFRFAAEELGIAAFDG
CLVAVDEFHHVSADPKNRLGYYLNQLIARGETHIIAMTGSYFRGDAVAVLSPEDEGKF
ETVTYTYYQQLNGYQYLKELDLGYYFYTGSYLDAIDRVLDGTRKTIVHIPNVNSREST
TQKHKEVEHILSVLGDWEGEDEETGFHLVRRTDGRVLRIADLVEDEPVRRNKVVSALK
DPAQKNNRDHVDIIIALGMAKEGFDWIWCEQALTVGYRSSLTEIIQIIGRATRDAPGK
TRAEFINLIAEPDASQEKVTDAVNDMLKAIAASLLMEQVLTPRFEFTPKTEESAPLDG
YDYGEEGYKPNGTNVGFNAQTGQFHMEIKGLVSPKSPEAQRICREDLNEVVASFVQDK
PSLEHGLFDEETAPQELTQVRLGKIIRDRYPELSDEDQEAVRQHAVAAFNLTQKGQKA
AEEVTQAAGGEEKIGGNTALIEGMRKIAMNVRDLDIDLIDAINPFEEAYKILAKSMNA
ETLKQVQEVIAGRHIALTIEEARDLAKRALLFKKERGRLPELTSPDAWERKMAEGVAV
LARKTAEERANG"
gene complement(34598..36406)
/locus_tag="APA26_RS15640"
/old_locus_tag="APA26_44010"
CDS complement(34598..36406)
/locus_tag="APA26_RS15640"
/old_locus_tag="APA26_44010"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813401.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0008170 - N-methyltransferase activity
[Evidence IEA]"
/GO_process="GO:0006306 - DNA methylation [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DNA methyltransferase"
/protein_id="WP_259286394.1"
/translation="MHYTSVPNIRKVLNPLFLDGLREELEKAGQNTQKLHALKERLSG
IRVFDPACGSGNFLVIAYKDMRDIQSEIDDRLKIERAERKSVIPLANFYGIEIRDFAV
EIARLSLLIAEFQSDEIHIDQKQARLNVLPLKDTGHIICGNALERDWFDVCAPQKSSE
IYICGNPPYKGSQWQSAEQKADLEQIFGQRTKSWKSLDYVAGWFMKAADYGQKTGSSS
AFVSTNSICQGRQVAILWPLIFGLNYEISFAHTSFKWANLAAHNAGVTVAIIGIAPVS
DCQKILFSNGNDGKTIRQETGHINAYLVPGSDVVVEKHSRPLSSVSDMDFGSMPNDGG
HLLLSWDDVERLRLTEHQKEKFIKPVYGSSEYIRGNMRFCIWVTDDLRNEAFQIPSLK
ERFDNVCDQRIKSERLTTKELSKYPYKFGEVRQVGNEEIIAIPAISSENRPFLPVGVL
PKGNIVTNKIYALYDAPLWNMALIASRLHWVWIGTVCVRMRTDFSYSNTLGWNTFPVP
TLTEKNRADLTRCAEDILLAREAHFPATIADLYDPDKMPDNLRAAHDRNDEVLERIYI
GRRFRNDTERLEKLFDLYSKMIAKKGGKMKKKKDAA"
gene 36299..37312
/locus_tag="APA26_RS17080"
CDS 36299..37312
/locus_tag="APA26_RS17080"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_259286395.1"
/translation="MQLLGILACLFQFLTQAIQKQRIEHFADIGHAGVVHPQRTALPF
ISHSLDHGPEDIGVNLRPVQLPGTQKIGAGQFIEFRAVRCPGKQVSVYIREIPGPGFD
PALFAIVIARIQIHRPEQLGHDLMRLIRGPFRHGLDGSGEQIVQEDPGILGKKAEDEA
RHEMVHVVAAFFRCPVGVFLQKFDIKTVQARRGLNINRVVFDLLDGRNARQGQEKPEP
ISQMREHICNVLIFRTVFRLKRHPIRGQQKPCLGRLGLGAFPEQIEGLGNMPLRTNGQ
MDVVALKHRSGNVRAVILAKPLDRDIAVSERLQELERKFPGIKRCLGNPGDSFFNLNG
IHA"
gene complement(37346..38440)
/locus_tag="APA26_RS15645"
/old_locus_tag="APA26_44020"
CDS complement(37346..38440)
/locus_tag="APA26_RS15645"
/old_locus_tag="APA26_44020"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019088725.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Fic family protein"
/protein_id="WP_012813402.1"
/translation="MLTPTYHIRPLPPQAEIETVPVLKALVEANKALAELKGRAATIP
NQGILIDTLALQEAKASSEIENIVTTQDELFQADLFPEGPDSMAAKEVALYRDALHLG
FRLLKETDGLILNKGLIAIFQRLKKRGDGFRNTPGTALKNERTGEVVFVPPQDGREII
GHMSDLERFVNDDGLCDLDPLIKMALIHHQFESIHPFPDGNGRVGRILNVLYLTRTGL
LDIPILYLSRYITRHKDEYYHLLQKVRDEGAWEVWILYMLRAVAETSRITLELIEGMR
AQMATMKQRMRTELPKIYSQELLNNLFRHPYTKIEYVQSDLSIARQTAGKYLDQLSEK
GLLSKHRSGRSNYYINAPLVRLFLEVSGGA"
gene complement(38767..39237)
/locus_tag="APA26_RS15650"
/old_locus_tag="APA26_44030"
CDS complement(38767..39237)
/locus_tag="APA26_RS15650"
/old_locus_tag="APA26_44030"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813403.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_012813403.1"
/translation="MKESRKRTGSTISGLVRKHLSEIEKRMIEGESRDQILDWLKEET
GREIERTTFFTVFYRARKWAEKNKIKAAYLAALSAQPVQSVAPEPAILTSSKKKPKKH
VERAADKPEVRRENVLPENPTGQQRLRAALAIGKPPPVLDWEEDDRFAKYRNGK"
gene 39775..40191
/locus_tag="APA26_RS15655"
/old_locus_tag="APA26_44040"
CDS 39775..40191
/locus_tag="APA26_RS15655"
/old_locus_tag="APA26_44040"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010512442.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_012813404.1"
/translation="MRERKYTVRFTEDEAEWLQEVALDGNVSGYIRDTVLRQSKSDRK
LVSMNERLVDLGQDMRLVTDLLHDLDQKVAGTPTAPDATGSQEPEGIPDELMAMVLEI
LLLVRSFSAPHERQMAQADVAQIGLPIWRKANLRDR"
gene complement(40261..40647)
/locus_tag="APA26_RS15660"
/old_locus_tag="APA26_44050"
CDS complement(40261..40647)
/locus_tag="APA26_RS15660"
/old_locus_tag="APA26_44050"
/EC_number="3.1.-.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813405.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system PemK/MazF family
toxin"
/protein_id="WP_003631194.1"
/translation="MVRDRSVVASGRVFAPGEIVLADWRGDALPKEPNKLRPAVVVED
ELFPPEWPNVMLVPLTDDENLVIPDLAVRIDPSADNGCSKSCWAISALLTTTSKHRLR
ITGSKVRPDQLFTIRRQIALLVGADG"
gene complement(40637..40873)
/locus_tag="APA26_RS15665"
/old_locus_tag="APA26_44060"
CDS complement(40637..40873)
/locus_tag="APA26_RS15665"
/old_locus_tag="APA26_44060"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="BrnA antitoxin family protein"
/protein_id="WP_228142526.1"
/translation="MASPLSIRLDERLRLNLEQEAAASGIPLSQLVRDLLETGAKRAR
RDRIRRDSARVARYVAATPSAQELFEETGGTHGA"
gene complement(41074..41574)
/locus_tag="APA26_RS15670"
/old_locus_tag="APA26_44070"
CDS complement(41074..41574)
/locus_tag="APA26_RS15670"
/old_locus_tag="APA26_44070"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011212413.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_052583252.1"
/translation="MRVDGVKVDKIFTDKCSGGTRNRPALTEMLRYVREGDTIICHSI
DRLARDLQDLLHLVETLTDRGVGVRFIKEAMTFEGNASPMQTMILQVMGSFAQFERSL
IKERQREGQQAARARGKLPGRRKSLSPEQITELKARVSAHEPKARIARDLGISRETLY
AYLKAA"
gene complement(41753..43138)
/locus_tag="APA26_RS15675"
/old_locus_tag="APA26_44080"
CDS complement(41753..43138)
/locus_tag="APA26_RS15675"
/old_locus_tag="APA26_44080"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012812390.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS1380-like element IS1380A family transposase"
/protein_id="WP_012813229.1"
/translation="MQTECSAGAYEFPASCGRRVVARFDGGRMSSDGGVILVKQADDI
LGLSRRFAACFRDKRHPGFVEYRVEDLVRQRIMGLALGYEDLNDHDALRHDLIFGLAS
GRLSGGRANCAALAGKSTLNRLERSGQQADRYCRIIADHEALATLFVTLFLDQHEHAP
ARIVLDVDATDDRIHGHQEGRAFHGYYGHNCYLPLYVFCGDHLLSATLRTADRDPGKE
ALADIRRIVEQIRSRWPRVRILVRGDSGFARDSLMTWCEDNHVDFLFGLAGNTRLYDR
IASLSAEVRDEAATTGRAARGFASFDWITKDSWTRRRRVVAKAEWRHGNRYHRFIVTT
LPQGMSDPRHLYEQIYCARGDMENRIKECQMDLFSDRTSSHTIRANQLRLWFSAAAYV
LLTALQRLALGQTSLETATCGTIRARLLKIATRVTLSVRRIVLSMPDMFPCQHEFALA
HARLRRLRQAI"
gene <43244..43723
/locus_tag="APA26_RS15680"
/old_locus_tag="APA26_44090"
/pseudo
CDS <43244..43723
/locus_tag="APA26_RS15680"
/old_locus_tag="APA26_44090"
/inference="COORDINATES: protein motif:HMM:NF039997.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="DUF6118 family protein"
gene complement(43809..45986)
/locus_tag="APA26_RS15685"
/old_locus_tag="APA26_44100"
CDS complement(43809..45986)
/locus_tag="APA26_RS15685"
/old_locus_tag="APA26_44100"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813409.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Hint domain-containing protein"
/protein_id="WP_012813409.1"
/translation="MSIVNPSNGTPYLTPGTTTFTSGQVVSGVTVPSNSKEVLSSGAT
GMQQTIKEASGNTGGGEILVLSGAQLLQNTDAGVWLNEGKIIVHDGGFISGGAATAGG
ITTILSGGIAEEITAGNAGSIGTVIFSSGAILKGTTVARSGGTISGGTATSGAQIKVL
SGGVLTDADAAAFGNIVVSKGGRGQDIIISSGGGLGVAGIASDTTVNNGGVIEINSGG
VSNNNHVNNGGKIYADSGSILGLTSISSGGSAIVASGATISDVVTIQDGGTATIWNNT
SGTIDLSGDTNHGLTISGLESGGTVSTVISGWSGSKPGNSDSIDLPGVSADGASYAYP
SDDQVVVTLANGNTITLNIPGVKNTGFVLSDDHHGGASAEVCFLSGSMIRTSEGDVAV
EDIQIGDEVIAFDWRNDEDVVRQVVWVGKARATVRPDLPDDEAGWPVRILKDAIADGV
PYKDMLITAEHCLFFRDRFVPVRMLVNGVSIFYDKSITSYDYYHVETEQHSVITADGM
LTESYLDTGNRSSFRQEGKIATLRGAVKNWADHAGAPLGVERSFVEPLFRALQWRENS
VVGTKISTTKIETTTDPDLHLITQTGAVIRPMRKTAHHYSFMLPPNTESVRIVSRSSR
PSDVIGPFVDDRRYMGVAVADVQLQCAKQQFDITSHLQDEKPSGWHDTDWTDCAWTNG
NAELPLGDHLTHGKMGILSMTIRAAGPYLLNTKPNSDMKKHSA"
gene 46313..47400
/locus_tag="APA26_RS15695"
/old_locus_tag="APA26_44120"
CDS join(46313..46574,46574..47400)
/locus_tag="APA26_RS15695"
/old_locus_tag="APA26_44120"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012476889.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
/protein_id="WP_088365001.1"
/translation="MKSDRFSDAQIMGVIRQAEGGVPVPDLCREHGISNATFYRWRAK
YGGMDASMISQMKALEEENRRLKRMYADLSMQTDILKEALGKKLKRPAQRRELAAQAV
AHHGVSIALACRIFGISETCFRYRPRLAAENDRIAALLVGLTQAHRRWGFGLCFLYLR
NVQGQLWNHKRVYRIYRELEFNLRIKPRRRLVREKPEKLSVPALPNTVWSMDFMADRL
LDGRAFRLLNILDEFNREGLAIEVDFSLPACRVVRCLEQVMEWRGRPEAIRMDNGPEY
VSHTLVSWAEKQGITLIYTQPGNPQQNAYIERYNRTVRQEWLEQYLFESIQDVQEVAT
QWLWTYNHDRPNMGNSGLTPAQKLKTAA"
gene 47575..47913
/locus_tag="APA26_RS15700"
/old_locus_tag="APA26_44130"
CDS 47575..47913
/locus_tag="APA26_RS15700"
/old_locus_tag="APA26_44130"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813396.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system RelE/ParE family
toxin"
/protein_id="WP_012813396.1"
/translation="MHSVIETPIFTKRADALLSREERAELIRLLAENPRQGDVIPGTG
GVRKLRFAGSGRGKRGGVRVIWYVASDRIPVYALLIYGKNEQDDLTPDQKKAMASMAE
RIKKSDQGGT"
gene 47915..48214
/locus_tag="APA26_RS15705"
/old_locus_tag="APA26_44140"
CDS 47915..48214
/locus_tag="APA26_RS15705"
/old_locus_tag="APA26_44140"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012813395.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="WP_012813395.1"
/translation="MAEQMNIADELLTSMEQAVGIAAGTVKPGRIWTPPEINVADIRK
RTGLSQVRFAARYGFSAAAVRDWEQKRRTPEKAARTLLMLIDKEPQAVERVLVGV"
gene 48421..48948
/locus_tag="APA26_RS16365"
CDS 48421..48948
/locus_tag="APA26_RS16365"
/inference="COORDINATES: protein motif:HMM:NF025107.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
/protein_id="WP_082179792.1"
/translation="MPRLFERLLVVTSFASTLWTLTQSRQITGKTHLVLQALASFQGY
RGLFPSHESIASRSGCSVRTVIRALEAAYRLGIVTRTRQRQRVSGRVCNGVNRYRLII
KPLEQARAAAVHYTQQLREALSRRKQAFLSKCQNDSEPHIQSNFFNTEPLSGAGMSHN
DLIRWCESIGYRGST"
gene 49303..49938
/locus_tag="APA26_RS15710"
/old_locus_tag="APA26_44150"
CDS 49303..49938
/locus_tag="APA26_RS15710"
/old_locus_tag="APA26_44150"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019089444.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ParA family protein"
/protein_id="WP_012813410.1"
/translation="MKTGKIVVISKLKGGSGATTLTRELATSALDAGKSVAIIDLDAQ
GSLTNWWNRRTAATPDAGPKLIQLSPENLPDMTEKLRGKFDLVLIDTPPSTHDALRKI
ASKADMAVIPTKPTPDDLDAVGPVIRQLRGVVPMAFVISQITNKRSPDAVEATELLSA
RAPVIGRTVIRVGYYRAAGAGQSGFETDKTVREEIATVYDNLMALLGDYHA"
CONTIG join(AP011152.1:1..49961)
//
