LOCUS NC_017179 4118573 bp DNA circular BCT 24-DEC-2012
DEFINITION Clostridium difficile BI1, complete genome.
ACCESSION NC_017179
VERSION NC_017179.1 GI:383843669
DBLINK Project: 158363
BioProject: PRJNA158363
KEYWORDS complete genome.
SOURCE Clostridium difficile BI1
ORGANISM Clostridium difficile BI1
Bacteria; Firmicutes; Clostridia; Clostridiales;
Peptostreptococcaceae.
REFERENCE 1
AUTHORS He,M., Sebaihia,M., Lawley,T.D., Stabler,R.A., Dawson,L.F.,
Martin,M.J., Holt,K.E., Seth-Smith,H.M., Quail,M.A., Rance,R.,
Brooks,K., Churcher,C., Harris,D., Bentley,S.D., Burrows,C.,
Clark,L., Corton,C., Murray,V., Rose,G., Thurston,S., van
Tonder,A., Walker,D., Wren,B.W., Dougan,G. and Parkhill,J.
TITLE Evolutionary dynamics of Clostridium difficile over short and long
time scales
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 107 (16), 7527-7532 (2010)
PUBMED 20368420
REFERENCE 2 (bases 1 to 4118573)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (05-APR-2012) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4118573)
AUTHORS He,M.
TITLE Direct Submission
JOURNAL Submitted (16-FEB-2010) He M., Wellcome Trust Sanger Institute,
Sulston Building, Wellcome Trust Genome Campus, Hinxton,
Cambridgeshire CB10 1SA, UNITED KINGDOM
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to FN668941.
Draft contiguous sequence
454 data coverage: 15x
capillary data coverage: 5.1x
coverage with combined data (bases meeting finished standard) 97.5%
coverage with combined data (bases below finished standard) 0.2%
coverage with 454-only assembly 2.2%
reference genomes: AM180355 and FN538970.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4118573
/organism="Clostridium difficile BI1"
/mol_type="genomic DNA"
/strain="BI1"
/isolation_source="Homo sapiens"
/db_xref="taxon:699034"
/country="USA"
/collection_date="1988"
gene 1..1320
/gene="dnaA"
/locus_tag="CDBI1_00005"
/db_xref="GeneID:12213213"
CDS 1..1320
/gene="dnaA"
/locus_tag="CDBI1_00005"
/note="COG0593 ATPase involved in DNA replication
initiation"
/codon_start=1
/transl_table=11
/product="chromosomal replication initiation protein"
/protein_id="YP_006197172.1"
/db_xref="GI:384359320"
/db_xref="GeneID:12213213"
/translation="MDIVSLWDKTLQLIKGDLTSVSFNTFFKNIVPLKIHLNDLILLA
PSDFNKDILENRYLHLIEDAISQLSLKKYNIKFVLSEKEVADLNSDSTDLNYRVLYPN
LNPKYTFDTFVIGNSNRFAHAACVAVAESPAKAYNPLFLYGGVGLGKTHLMHAIGHHI
VSQKKDSKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQ
EEFFHTFNTLHEANKQIIISSDRPPKDIPTLEDRLRSRFEMGLITDIQAPDFETRIAI
LRKKAQLERIDVPNEVMSYIAKNIKSNIRELEGALTRVVAYSSLSNRVISFDLATEAL
KDIITTSKNEEINVLRIKEKVSSVFNLKMEDFNSKKRTRSIAYPRQIAMYLTRELTDL
SLPKIGEEFGGRDHTTVIHAHDKVSKDIEESEEIKTKIDKIISDLKG"
misc_feature 4..1317
/gene="dnaA"
/locus_tag="CDBI1_00005"
/note="chromosomal replication initiation protein;
Reviewed; Region: dnaA; PRK00149"
/db_xref="CDD:178902"
misc_feature 13..201
/gene="dnaA"
/locus_tag="CDBI1_00005"
/note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
/db_xref="CDD:204696"
misc_feature 352..783
/gene="dnaA"
/locus_tag="CDBI1_00005"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 427..450
/gene="dnaA"
/locus_tag="CDBI1_00005"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(430..453,616..618,718..720)
/gene="dnaA"
/locus_tag="CDBI1_00005"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 604..621
/gene="dnaA"
/locus_tag="CDBI1_00005"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 754..756
/gene="dnaA"
/locus_tag="CDBI1_00005"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 1048..1311
/gene="dnaA"
/locus_tag="CDBI1_00005"
/note="C-terminal domain of bacterial DnaA proteins. The
DNA-binding C-terminal domain of DnaA contains a
helix-turn-helix motif that specifically interacts with
the DnaA box, a 9-mer motif that occurs repetitively in
the replication origin oriC. Multiple...; Region:
Bac_DnaA_C; cd06571"
/db_xref="CDD:119330"
misc_feature order(1111..1113,1135..1140,1159..1161,1177..1185,
1210..1224,1231..1233,1240..1245)
/gene="dnaA"
/locus_tag="CDBI1_00005"
/note="DnaA box-binding interface [nucleotide binding];
other site"
/db_xref="CDD:119330"
gene 1562..2668
/locus_tag="CDBI1_00010"
/db_xref="GeneID:12215844"
CDS 1562..2668
/locus_tag="CDBI1_00010"
/EC_number="2.7.7.7"
/note="COG0592 DNA polymerase sliding clamp subunit (PCNA
homolog)"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunit beta"
/protein_id="YP_006197173.1"
/db_xref="GI:384359321"
/db_xref="GeneID:12215844"
/translation="MKIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKL
TGYDAEIGIETYVQAEIIEKGDVVVDARLFGDIIRKLPDSFVEIETDSENNIYINCVN
SRFKIKGYAAKEFPKLPELNEEDLYSIPQEILKNMIKQTVFAISQDQTKPVLMGELLE
IVDRNLNLVAIDGYRLAVKSCSVDSLTENIKVIIPGKTLIDVNSLLSGEDNVKVGFNE
KNAIFIINDTKIITRLLEGDFIDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEK
NNLIKLSIRDKVMAITSNTEKGNVYEEVEIDLDGDYLDIAFNSRYFIEGLKNIDNEEI
FIEFTTNVNPCIIKPTDDVNYIYLLLPVRISSNI"
misc_feature 1562..2653
/locus_tag="CDBI1_00010"
/note="DNA polymerase III subunit beta; Validated; Region:
PRK05643"
/db_xref="CDD:180180"
misc_feature 1562..2650
/locus_tag="CDBI1_00010"
/note="Beta clamp domain. The beta subunit (processivity
factor) of DNA polymerase III holoenzyme, refered to as
the beta clamp, forms a ring shaped dimer that encircles
dsDNA (sliding clamp) in bacteria. The beta-clamp is
structurally similar to the trimeric...; Region:
beta_clamp; cd00140"
/db_xref="CDD:29053"
misc_feature order(1631..1633,1775..1777,1796..1798,2150..2152)
/locus_tag="CDBI1_00010"
/note="putative DNA binding surface [nucleotide binding];
other site"
/db_xref="CDD:29053"
misc_feature order(1778..1780,1787..1789,1865..1867,1871..1873,
2369..2371,2462..2467)
/locus_tag="CDBI1_00010"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29053"
misc_feature order(2072..2074,2078..2089,2513..2515,2639..2650)
/locus_tag="CDBI1_00010"
/note="beta-clamp/clamp loader binding surface; other
site"
/db_xref="CDD:29053"
misc_feature order(2072..2074,2078..2083,2294..2296,2402..2404,
2441..2446,2522..2524,2639..2650)
/locus_tag="CDBI1_00010"
/note="beta-clamp/translesion DNA polymerase binding
surface; other site"
/db_xref="CDD:29053"
gene 2805..3011
/locus_tag="CDBI1_00015"
/db_xref="GeneID:12215846"
CDS 2805..3011
/locus_tag="CDBI1_00015"
/note="COG2501 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="RNA-binding mediating protein"
/protein_id="YP_006197174.1"
/db_xref="GI:384359322"
/db_xref="GeneID:12215846"
/translation="MTEITIESEYIKLDQFLKLAEIASTGGHAKFLIQEGLVTVNDEI
ELRRGKKIKSGDIVKIEGTKIKVL"
misc_feature 2835..3008
/locus_tag="CDBI1_00015"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(2838..2840,2874..2879,2883..2888,2892..2897,
2904..2909,2913..2915,2934..2957,2961..2963)
/locus_tag="CDBI1_00015"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 3029..4144
/locus_tag="CDBI1_00020"
/db_xref="GeneID:12214994"
CDS 3029..4144
/locus_tag="CDBI1_00020"
/note="COG1195 Recombinational DNA repair ATPase (RecF
pathway)"
/codon_start=1
/transl_table=11
/product="DNA replication and repair protein"
/protein_id="YP_006197175.1"
/db_xref="GI:384359323"
/db_xref="GeneID:12214994"
/translation="MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIY
MLSFGKSFRTNKDKEMVRFNSENLYIGGSFSKYNKYSLIELIIGKDKKGIRINKVPLQ
KIQELLGNLNVVIFSPEDLRLVKEGPKERRAFIDKEISQIIPKYYKYLTNYNKTLSQR
SRVLKNIHVDEALLDVYDDTLAKYGSYIYILRRDFIKKIANISENMHMNLTNGVERLS
IRYKNQINITDEDTIDTVYNKFLAKLSSNRPNDIESKTTRYGIHKDDLNIFINDLDAR
LFGSQGQQRTASISLKLSEIELIKNEVEEYPVLILDDVFSELDEARQKLLVNNLSNVQ
MFITSAEVSHKKIFDEKNVTIFNIENGDVISIENGGN"
misc_feature 3029..4123
/locus_tag="CDBI1_00020"
/note="recombination protein F; Reviewed; Region: recF;
PRK00064"
/db_xref="CDD:178835"
misc_feature 3035..>3586
/locus_tag="CDBI1_00020"
/note="ATP-binding cassette domain of RecF; Region:
ABC_RecF; cd03242"
/db_xref="CDD:213209"
misc_feature 3116..3139
/locus_tag="CDBI1_00020"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213209"
misc_feature order(3125..3130,3134..3142,3329..3331)
/locus_tag="CDBI1_00020"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213209"
misc_feature 3320..3331
/locus_tag="CDBI1_00020"
/note="Q-loop/lid; other site"
/db_xref="CDD:213209"
misc_feature <3806..4111
/locus_tag="CDBI1_00020"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
misc_feature 3863..3892
/locus_tag="CDBI1_00020"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213179"
misc_feature 3950..3967
/locus_tag="CDBI1_00020"
/note="Walker B; other site"
/db_xref="CDD:213179"
misc_feature 3974..3985
/locus_tag="CDBI1_00020"
/note="D-loop; other site"
/db_xref="CDD:213179"
misc_feature 4037..4057
/locus_tag="CDBI1_00020"
/note="H-loop/switch region; other site"
/db_xref="CDD:213179"
gene 4145..6046
/gene="gyrB"
/locus_tag="CDBI1_00025"
/db_xref="GeneID:12214996"
CDS 4145..6046
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="'COG0187 Type IIA topoisomerase (DNA gyrase/topo
II, topoisomerase IV), B subunit'"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit B"
/protein_id="YP_006197176.1"
/db_xref="GI:384359324"
/db_xref="GeneID:12214996"
/translation="MKQEYGASQIQVLEGLEAVRKRPGMYIGSTSPRGLHHLVYEVVD
NSIDEALQGYCSDIYVSINEDGSVLVKDNGRGIPVEIHPKTGKSTLETVLTNLHAGGK
FGGGGYKVSGGLHGVGVSVVNALSKWMVAEVYLNGKIYKQTYEKGLPTSKLEVVGESQ
DKGTMIQFMPDETIFDEIEFKYETLEYRLRELSFLNKGIKIVFEDKREGQEKRKEFHY
TGGLVEYIKYLNKSRTGIHDDIVYIDKKVDDCFVELAMQYTDGYTENIYSFANNINTH
EGGSHLSGFKAALTKTVNDYAKRNKFLKENDVNLLGEDIREGLTAVVSVKLPEPQFEG
QTKTKLGNSFMRGIVDSVTVDELGSFLEENPSTARIIVDKALRAQRAREAAKKARELT
RRKSVLESTSLPGKLADCAEKDPSKSEIFLVEGDSAGGSAKQGRDRNSQAILPLRGKI
LNVEKSRLDRILSSDEIKNMITAYGCGIGEDFDIDKARYHKIIIMTDADVDGAHIRTL
LLTFFFRYMRPLIDEGYVYAAQPPLYKVTKQKKEHYVYSDKELNILLDEIGRNGVELQ
RYKGLGEMNAEQLWETTMNPETRTLLQVTVEDAAIADEVFSMLMGDKVAPRKEFIEEN
ARFVRNLDI"
misc_feature 4145..6043
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="DNA gyrase subunit B; Validated; Region: gyrB;
PRK05644"
/db_xref="CDD:180181"
misc_feature 4247..>4396
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature 4277..4279
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(4364..4366,4370..4372)
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
misc_feature 4802..5263
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
a ribosomal S5 domain 2-like fold, of the type found in
proteins of the type IIA family of DNA topoisomerases
similar to the B subunits of E. coli DNA gyrase and E.
coli Topoisomerase IV which are; Region:
TopoII_Trans_DNA_gyrase; cd00822"
/db_xref="CDD:48467"
misc_feature 4955..4957
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="anchoring element; other site"
/db_xref="CDD:48467"
misc_feature order(5129..5131,5138..5143,5147..5149)
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:48467"
misc_feature order(5147..5149,5153..5155)
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:48467"
misc_feature 5396..5737
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in proteins of the type IIA family of DNA topoisomerases
similar to the Escherichia coli GyrB subunit. TopoIIA
enzymes cut both strands of the...; Region:
TOPRIM_TopoIIA_GyrB; cd03366"
/db_xref="CDD:173786"
misc_feature order(5414..5419,5426..5428,5633..5635,5639..5641,
5645..5647)
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="active site"
/db_xref="CDD:173786"
misc_feature order(5414..5416,5633..5635)
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173786"
misc_feature 5819..6010
/gene="gyrB"
/locus_tag="CDBI1_00025"
/note="DNA gyrase B subunit, carboxyl terminus; Region:
DNA_gyraseB_C; pfam00986"
/db_xref="CDD:201537"
gene 6066..8492
/locus_tag="CDBI1_00030"
/db_xref="GeneID:12215153"
CDS 6066..8492
/locus_tag="CDBI1_00030"
/note="'COG0188 Type IIA topoisomerase (DNA gyrase/topo
II, topoisomerase IV), A subunit'"
/codon_start=1
/transl_table=11
/product="DNA gyrase subunit A"
/protein_id="YP_006197177.1"
/db_xref="GI:384359325"
/db_xref="GeneID:12215153"
/translation="MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVH
RRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLV
DGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPA
RYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPT
AAIIMGKESIAEAYRTGRGKVKVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIA
ELVKEKRIEGISDLRDESNRNGMRIVIELKRDANANIVLNNLYKHSQMEDTFSIIMLA
LVDGQPRVLNLKQILYHYIKHQEDVVTRRTKFELNKAEARAHILEGLKIALDNIDAVI
SLIRASKTGQEAKIGLIEKFKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKIN
RLKEILADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLT
HFGYIKRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKL
NAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPIDGNDENEYLLLATKKGIVKKTKR
EEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYMGRTA
MGVKGITLSKEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNI
SEKTGTIVGADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVV
SIAKINIEEE"
misc_feature 6072..8486
/locus_tag="CDBI1_00030"
/note="DNA gyrase subunit A; Validated; Region: PRK05560"
/db_xref="CDD:180128"
misc_feature 6153..7475
/locus_tag="CDBI1_00030"
/note="DNA Topoisomerase, subtype IIA; domain A';
bacterial DNA topoisomerase IV (C subunit, ParC),
bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
toposiomerases II. DNA topoisomerases are essential
enzymes that regulate the conformational changes in
DNA...; Region: TOP4c; cd00187"
/db_xref="CDD:29149"
misc_feature order(6153..6233,6246..6395,6399..6455,6459..6530,
6537..6539)
/locus_tag="CDBI1_00030"
/note="CAP-like domain; other site"
/db_xref="CDD:29149"
misc_feature 6426..6428
/locus_tag="CDBI1_00030"
/note="active site"
/db_xref="CDD:29149"
misc_feature order(7221..7229,7236..7247,7269..7274,7323..7373)
/locus_tag="CDBI1_00030"
/note="primary dimer interface [polypeptide binding];
other site"
/db_xref="CDD:29149"
misc_feature 7578..7712
/locus_tag="CDBI1_00030"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 7725..7871
/locus_tag="CDBI1_00030"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 7887..8024
/locus_tag="CDBI1_00030"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8031..8174
/locus_tag="CDBI1_00030"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8184..8327
/locus_tag="CDBI1_00030"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
misc_feature 8334..8477
/locus_tag="CDBI1_00030"
/note="DNA gyrase C-terminal domain, beta-propeller;
Region: DNA_gyraseA_C; pfam03989"
/db_xref="CDD:202843"
gene 8561..8857
/locus_tag="CDBI1_00035"
/db_xref="GeneID:12215155"
CDS 8561..8857
/locus_tag="CDBI1_00035"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197178.1"
/db_xref="GI:384359326"
/db_xref="GeneID:12215155"
/translation="MCNKRSCKKGGFLLLGAILGFIFGMFFAPKKGSELRKETKEKFN
DVKENPKEVLHETFNDVKERIINLVDDDNNEEDIKISEEDIVISKSFDDEGDVN"
misc_feature <8645..8773
/locus_tag="CDBI1_00035"
/note="YtxH-like protein; Region: YtxH; pfam12732"
/db_xref="CDD:205050"
gene 8857..9117
/locus_tag="CDBI1_00040"
/db_xref="GeneID:12213909"
CDS 8857..9117
/locus_tag="CDBI1_00040"
/note="COG0477 Permeases of the major facilitator
superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197179.1"
/db_xref="GI:384359327"
/db_xref="GeneID:12213909"
/translation="MNAWGWQIGAVLVGSSALIVAIYLAKTLNSINKVVEKAYKIVDY
NERHIQDIVENASSISKGIDDIVYVINKILSIGNIFKIIKRK"
misc_feature <8857..>8976
/locus_tag="CDBI1_00040"
/note="alpha-ketoglutarate transporter; Provisional;
Region: PRK10406"
/db_xref="CDD:182433"
gene 9129..9446
/locus_tag="CDBI1_00045"
/db_xref="GeneID:12213911"
CDS 9129..9446
/locus_tag="CDBI1_00045"
/note="COG1366 Anti-anti-sigma regulatory factor
(antagonist of anti-sigma factor)"
/codon_start=1
/transl_table=11
/product="anti-sigma-B factor antagonist"
/protein_id="YP_006197180.1"
/db_xref="GI:384359328"
/db_xref="GeneID:12213911"
/translation="MSMNIDSNLDSQNKFWNVCLDGELDVSTADKLKEHLHALIEKNM
LDVKINLKDLDYIDSTGLGAMIGVLKKLKINEKEIYIVNPKSNVKKIFTITGLDKIFK
VEG"
misc_feature 9180..9437
/locus_tag="CDBI1_00045"
/note="Sulphate Transporter and Anti-Sigma factor
antagonist) domain of anti-anti-sigma factors, key
regulators of anti-sigma factors by phosphorylation;
Region: STAS_anti-anti-sigma_factors; cd07043"
/db_xref="CDD:132914"
misc_feature <9186..9440
/locus_tag="CDBI1_00045"
/note="Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism];
Region: SUL1; COG0659"
/db_xref="CDD:31004"
misc_feature order(9195..9197,9201..9209,9225..9227,9294..9296,
9300..9308,9312..9320,9327..9332,9396..9398,9408..9413,
9417..9419)
/locus_tag="CDBI1_00045"
/note="anti sigma factor interaction site; other site"
/db_xref="CDD:132914"
misc_feature 9303..9305
/locus_tag="CDBI1_00045"
/note="regulatory phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:132914"
gene 9450..9857
/locus_tag="CDBI1_00050"
/db_xref="GeneID:12213913"
CDS 9450..9857
/locus_tag="CDBI1_00050"
/note="COG2172 Anti-sigma regulatory factor (Ser/Thr
protein kinase)"
/codon_start=1
/transl_table=11
/product="anti-sigma-B factor (serine-protein kinase)"
/protein_id="YP_006197181.1"
/db_xref="GI:384359329"
/db_xref="GeneID:12213913"
/translation="MACETIKMEITTNPDYVSIIRLTASGIANKMGFPIDDIEDIKVA
VSEACTNAIKHSKDDVFNIVFNILDNAINIEIQDNGKGYDVSSISTPDLENPKESGLG
LFIIKTLMDDVDIESEHNQGTKIKMTKYLGVDI"
misc_feature 9477..9836
/locus_tag="CDBI1_00050"
/note="Histidine kinase-like ATPase domain; Region:
HATPase_c_2; pfam13581"
/db_xref="CDD:205759"
misc_feature 9570..9833
/locus_tag="CDBI1_00050"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(9588..9590,9600..9602,9609..9611,9675..9677,
9681..9683,9687..9689,9693..9698,9747..9758,9792..9794,
9798..9800,9813..9818,9822..9824)
/locus_tag="CDBI1_00050"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 9600..9602
/locus_tag="CDBI1_00050"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(9687..9689,9693..9695,9747..9749,9753..9755)
/locus_tag="CDBI1_00050"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 9857..10630
/locus_tag="CDBI1_00055"
/db_xref="GeneID:12215442"
CDS 9857..10630
/locus_tag="CDBI1_00055"
/note="COG1191 DNA-directed RNA polymerase specialized
sigma subunit"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma-B factor"
/protein_id="YP_006197182.1"
/db_xref="GI:384359330"
/db_xref="GeneID:12215442"
/translation="MKNVANATHYLNMDTKELFNLYNKNKNVDIRNILIERHLYLARL
LAKKYINKGVDFEDIYQVASLALIYAIDRYDVEKGFEFSSFATPTIVGEIKKYFRDKV
WTLRVPRRIQELSKKISDAKIKLEQENKKHPKVKDIADYIGVSEEDVLEAMEASYGYQ
PMSLDSSSNDDSEDKDITLIDKIGKEEGNFGSIEYEDFINKFIETLNELEVKIFKDRF
FFDKTQSSIAKELGISQMTVSRLEKKVVEKLKKEYEKNL"
misc_feature 9938..10576
/locus_tag="CDBI1_00055"
/note="RNA polymerase sigma-70 factor, sigma-B/F/G
subfamily; Region: SigBFG; TIGR02980"
/db_xref="CDD:200225"
misc_feature 9956..10168
/locus_tag="CDBI1_00055"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 10193..>10336
/locus_tag="CDBI1_00055"
/note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
/db_xref="CDD:146934"
misc_feature 10451..10576
/locus_tag="CDBI1_00055"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(10475..10477,10505..10507,10523..10528,10556..10558,
10562..10567,10571..10576)
/locus_tag="CDBI1_00055"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 10811..12323
/locus_tag="CDBI1_r18386"
/db_xref="GeneID:12215443"
rRNA 10811..12323
/locus_tag="CDBI1_r18386"
/product="16S ribosomal RNA"
/db_xref="GeneID:12215443"
misc_feature 12625..15446
/note="potential RNA of insufficient length (23S ribosomal
RNA)"
gene 15697..15813
/locus_tag="CDBI1_r18364"
/db_xref="GeneID:12215444"
rRNA 15697..15813
/locus_tag="CDBI1_r18364"
/product="5S ribosomal RNA"
/db_xref="GeneID:12215444"
gene 15819..15907
/locus_tag="CDBI1_t18212"
/db_xref="GeneID:12215445"
tRNA 15819..15907
/locus_tag="CDBI1_t18212"
/product="tRNA-Leu"
/db_xref="GeneID:12215445"
gene 15919..15995
/locus_tag="CDBI1_t18214"
/db_xref="GeneID:12215446"
tRNA 15919..15995
/locus_tag="CDBI1_t18214"
/product="tRNA-Met"
/db_xref="GeneID:12215446"
gene 16104..17616
/locus_tag="CDBI1_r18388"
/db_xref="GeneID:12215447"
rRNA 16104..17616
/locus_tag="CDBI1_r18388"
/product="16S ribosomal RNA"
/db_xref="GeneID:12215447"
gene 17663..17738
/locus_tag="CDBI1_t18216"
/db_xref="GeneID:12215448"
tRNA 17663..17738
/locus_tag="CDBI1_t18216"
/product="tRNA-Ala"
/db_xref="GeneID:12215448"
misc_feature 17993..20837
/note="potential RNA of insufficient length (23S ribosomal
RNA)"
gene 21001..21117
/locus_tag="CDBI1_r18366"
/db_xref="GeneID:12215449"
rRNA 21001..21117
/locus_tag="CDBI1_r18366"
/product="5S ribosomal RNA"
/db_xref="GeneID:12215449"
gene 21244..21753
/locus_tag="CDBI1_00060"
/db_xref="GeneID:12215450"
CDS 21244..21753
/locus_tag="CDBI1_00060"
/note="COG1827 Predicted small molecule binding protein
(contains 3H domain)"
/codon_start=1
/transl_table=11
/product="small-molecule-binding protein"
/protein_id="YP_006197183.1"
/db_xref="GI:384359331"
/db_xref="GeneID:12215450"
/translation="MNSDERRSKLIDILKESKCPVKGGMLAEILNVSRQVIVQDIALI
RARGFEIIATPQGYIIYNQPYFTKQIKCKNHRNSKEIYDELKIIVDLGGIVKDVIVNH
PTYGQITAELNIHSKMDIDNFMKKVETNEFKQLSVLTECSHIHTIETLKEETIEVITK
ELEDRGILS"
misc_feature 21244..21747
/locus_tag="CDBI1_00060"
/note="Predicted small molecule binding protein (contains
3H domain) [General function prediction only]; Region:
COG1827"
/db_xref="CDD:32012"
misc_feature 21259..21420
/locus_tag="CDBI1_00060"
/note="HTH domain; Region: HTH_11; pfam08279"
/db_xref="CDD:116863"
misc_feature 21451..21747
/locus_tag="CDBI1_00060"
/note="3H domain; Region: 3H; pfam02829"
/db_xref="CDD:202419"
gene 21765..22646
/locus_tag="CDBI1_00065"
/db_xref="GeneID:12215451"
CDS 21765..22646
/locus_tag="CDBI1_00065"
/note="COG0668 Small-conductance mechanosensitive channel"
/codon_start=1
/transl_table=11
/product="putative mechanosensitive ion channel protein"
/protein_id="YP_006197184.1"
/db_xref="GI:384359332"
/db_xref="GeneID:12215451"
/translation="MNFLSLAKAASTNSNITKRTLENMLNNFSDNIPNIIYAIIVFVI
GIYISKIVRKMVSRFLIKYGMSKGVNNFIVYGIYISMLSIISLISLGVIGIQTTSVVA
VLGAAGFSIGLAFKEILSNLGSGMIILFFKPFNIGDYIQGSGVEGTVSDIQIFSTVLK
TPDNKTIIIPNFQLTSNNIINYTHQNKRRIDFSYNISYDSDIDVVKSILNEIFINEKR
ILDDPKPIIGLNSIGNNTMQIVARPWVKTDDYWDVYFDVMEKVKNKFDENNIKVPFVP
SSLLFNNMSNSNTMDKR"
misc_feature 22050..22580
/locus_tag="CDBI1_00065"
/note="Mechanosensitive ion channel; Region: MS_channel;
pfam00924"
/db_xref="CDD:201506"
gene 23104..24375
/locus_tag="CDBI1_00070"
/db_xref="GeneID:12215452"
CDS 23104..24375
/locus_tag="CDBI1_00070"
/EC_number="6.1.1.11"
/note="COG0172 Seryl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="seryl-tRNA synthetase"
/protein_id="YP_006197185.1"
/db_xref="GI:384359333"
/db_xref="GeneID:12215452"
/translation="MLDIKRIRENLDDIKKAMERRGEREFDLDAVVELDNKRREILQE
VEVMKNELNVNSKKIPQLIKEGKDVTEEKTRLKELSDKIKGIDEKVKEVEAKMEYTLM
RIPNVPHPEVPQGETDEDNVQIRTWGEPTKFDFEYKAHWDIGTGLGILDFERAGKITG
SRFTLYRGLGARLERSLMNFFLNTHTAKHGYTEVLPPFMANRNSFIGTGQLPKFEEDM
FKIEGLEYFLIPTAEVPVTNIHANEILDVAELPIKYCAYTPCFRSEAGSAGRDTRGLV
RQHQFNKVELVKFVKPEDSYNELESLTHDAETMLQMLGLPYRVVKICTGDLGFTAAFK
YDLEVWMPSYNRYVEISSCSNFEDFQARRAGIRFKRDKKSKAEYVHTLNGSGLAIGRC
LAAILENYQQADGSVVVPEELRPYMGVDVIK"
misc_feature 23104..24372
/locus_tag="CDBI1_00070"
/note="seryl-tRNA synthetase; Provisional; Region:
PRK05431"
/db_xref="CDD:180077"
misc_feature 23104..23427
/locus_tag="CDBI1_00070"
/note="Seryl-tRNA synthetase N-terminal domain; Region:
Seryl_tRNA_N; pfam02403"
/db_xref="CDD:202232"
misc_feature 23461..24354
/locus_tag="CDBI1_00070"
/note="Seryl-tRNA synthetase (SerRS) class II core
catalytic domain. SerRS is responsible for the attachment
of serine to the 3' OH group of ribose of the appropriate
tRNA. This domain It is primarily responsible for
ATP-dependent formation of the enzyme bound...; Region:
SerRS_core; cd00770"
/db_xref="CDD:29815"
misc_feature order(23563..23580,23587..23607,23617..23619,23623..23625,
23629..23631,23638..23640,23677..23688,23692..23700,
23704..23706,23758..23763,23767..23769,23779..23781,
23806..23808,23818..23820,23830..23832,23878..23880,
23941..23943,24349..24354)
/locus_tag="CDBI1_00070"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29815"
misc_feature order(23584..23586,23794..23796,23800..23802,23887..23889,
23893..23895,23911..23913,23920..23922,23929..23931,
23935..23937,23944..23946,23950..23952,23956..23958,
24148..24159,24250..24252,24256..24258,24274..24276)
/locus_tag="CDBI1_00070"
/note="active site"
/db_xref="CDD:29815"
misc_feature 23677..23700
/locus_tag="CDBI1_00070"
/note="motif 1; other site"
/db_xref="CDD:29815"
misc_feature 23884..23895
/locus_tag="CDBI1_00070"
/note="motif 2; other site"
/db_xref="CDD:29815"
misc_feature order(24259..24267,24274..24276)
/locus_tag="CDBI1_00070"
/note="motif 3; other site"
/db_xref="CDD:29815"
gene 24695..25150
/locus_tag="CDBI1_00075"
/db_xref="GeneID:12215453"
CDS 24695..25150
/locus_tag="CDBI1_00075"
/note="COG0590 Cytosine/adenosine deaminases"
/codon_start=1
/transl_table=11
/product="cytosine/adenosine deaminase"
/protein_id="YP_006197186.1"
/db_xref="GI:384359334"
/db_xref="GeneID:12215453"
/translation="MESSFYMKEALKEAYKAYNKKETPIGAIIVKDNQIIARAHNLTE
TLKDSTAHAEILAIKQASEKLGGWRLTDCDLYVTMEPCIMCSGAIVNSRIKKLIIGTR
HVKNSYIEKQHEFKLDYFNNNNVKVAFDVLQEECSIILQEFFKALRKRD"
misc_feature 24713..25003
/locus_tag="CDBI1_00075"
/note="Nucleoside deaminases include adenosine, guanine
and cytosine deaminases. These enzymes are Zn dependent
and catalyze the deamination of nucleosides. The zinc ion
in the active site plays a central role in the proposed
catalytic mechanism, activating a...; Region:
nucleoside_deaminase; cd01285"
/db_xref="CDD:29828"
misc_feature order(24767..24769,24815..24817,24848..24856,24938..24940,
24947..24949)
/locus_tag="CDBI1_00075"
/note="nucleoside/Zn binding site; other site"
/db_xref="CDD:29828"
misc_feature order(24842..24844,24857..24859,24869..24871,24941..24946,
24953..24958,24965..24970)
/locus_tag="CDBI1_00075"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29828"
misc_feature order(24848..24856,24935..24940,24947..24949)
/locus_tag="CDBI1_00075"
/note="catalytic motif [active]"
/db_xref="CDD:29828"
gene 25151..25242
/locus_tag="CDBI1_t18218"
/db_xref="GeneID:12215454"
tRNA 25151..25242
/locus_tag="CDBI1_t18218"
/product="tRNA-Ser"
/db_xref="GeneID:12215454"
misc_feature 25165..25350
/note="potential protein location (hypothetical protein
CDBI1_00080 [Clostridium difficile BI1]) that overlaps RNA
(tRNA-S)"
gene 25621..27258
/locus_tag="CDBI1_00085"
/db_xref="GeneID:12215455"
CDS 25621..27258
/locus_tag="CDBI1_00085"
/EC_number="2.7.7.7"
/note="'COG2812 DNA polymerase III, gamma/tau subunits'"
/codon_start=1
/transl_table=11
/product="DNA polymerase III subunits gamma and tau"
/protein_id="YP_006197187.1"
/db_xref="GI:384359335"
/db_xref="GeneID:12215455"
/translation="MHKALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCG
TRGTGKTSTAKIFSRAVNCLNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDD
IRELRESVKYSPANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHK
IPATILSRCQRYDFKRVTVKDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALS
ILDQCMSFGESKIDYKDVVELMGSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKD
IRNLINDLIDHFRNLMVCKVSSELDEIISLPEETIEQLKIQSKNIDINDLIRILNILS
ITQDDIKSSSNPRVLVEITIMKIAQPMFDESKEALIKRVENLEKMIELGNFKSEKIGN
NKEKEYEVDREIDVKQENVVYEDVKNEDVILIESSWKNILKQIKKDKKMPIYALLSEV
KSFNVYSNMLYVIFDDKFDFAKTRLSSQDTINYLEKTIRDVLNRSFNVKIVLTSEVKD
INLEVKEKKDIGEEILKNIVSEEILEIKYSIDENESK"
misc_feature 25621..27228
/locus_tag="CDBI1_00085"
/note="DNA polymerase III subunits gamma and tau;
Validated; Region: PRK05563"
/db_xref="CDD:180131"
misc_feature 25672..26133
/locus_tag="CDBI1_00085"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 25750..25773
/locus_tag="CDBI1_00085"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(25753..25776,25993..25995,26086..26088)
/locus_tag="CDBI1_00085"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 25981..25998
/locus_tag="CDBI1_00085"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 26122..26124
/locus_tag="CDBI1_00085"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 26311..26739
/locus_tag="CDBI1_00085"
/note="DNA polymerase III subunits gamma and tau domain
III; Region: DNA_pol3_gamma3; pfam12169"
/db_xref="CDD:152604"
gene 27317..27667
/locus_tag="CDBI1_00090"
/db_xref="GeneID:12215456"
CDS 27317..27667
/locus_tag="CDBI1_00090"
/note="COG0718 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197188.1"
/db_xref="GI:384359336"
/db_xref="GeneID:12215456"
/translation="MAKKGFGGGMMPGGGNMNNLLKQAQKMQENMQKAQQELESKEVE
ASVGGGAVTVKVNGKKEVIDITIKPEVVDPDDIEMLQDLVLSAVNQALRNIDDIQASQ
MSKVTGGMNIPGLF"
misc_feature 27374..27664
/locus_tag="CDBI1_00090"
/note="hypothetical protein; Validated; Region: PRK00153"
/db_xref="CDD:178904"
gene 27680..28279
/locus_tag="CDBI1_00095"
/db_xref="GeneID:12215457"
CDS 27680..28279
/locus_tag="CDBI1_00095"
/note="COG0353 Recombinational DNA repair protein (RecF
pathway)"
/codon_start=1
/transl_table=11
/product="recombination protein RecR"
/protein_id="YP_006197189.1"
/db_xref="GI:384359337"
/db_xref="GeneID:12215457"
/translation="MQVYTGPITRLIEEFSKLPGVGRKTAQRLAFHIINMNTNDVEAL
SKAIIDAKREIRYCSICCNITDTDPCSMCSNKSRDSSVICVVEDPRDVAAMERTREFK
GQYHVLNGVISPMDGIGPDMLKIKELIQRLGNQEVKEIIMATNPTIEGEATAMYIARL
VKPMGIKVTRIAHGLPVGGDLEYADEVTISKALEGRREI"
misc_feature 27689..28276
/locus_tag="CDBI1_00095"
/note="recombination protein RecR; Reviewed; Region: recR;
PRK00076"
/db_xref="CDD:178844"
misc_feature 27797..27916
/locus_tag="CDBI1_00095"
/note="RecR protein; Region: RecR; pfam02132"
/db_xref="CDD:202123"
misc_feature 27920..28255
/locus_tag="CDBI1_00095"
/note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
nucleotidyl transferase/hydrolase domain of the type found
in Escherichia coli RecR. RecR participates in the RecFOR
pathway of homologous recombinational repair in
prokaryotes. This pathway provides a...; Region:
TOPRIM_recR; cd01025"
/db_xref="CDD:173775"
misc_feature order(27938..27943,27950..27952,28112..28114,28118..28120,
28124..28126)
/locus_tag="CDBI1_00095"
/note="putative active site [active]"
/db_xref="CDD:173775"
misc_feature order(27938..27940,28112..28114)
/locus_tag="CDBI1_00095"
/note="putative metal-binding site [ion binding]; other
site"
/db_xref="CDD:173775"
misc_feature order(27956..27964,27968..27973,28094..28096,28100..28102,
28106..28108,28115..28117,28151..28153,28181..28216,
28220..28222,28235..28237,28241..28243,28247..28255)
/locus_tag="CDBI1_00095"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:173775"
gene 28420..28641
/locus_tag="CDBI1_00100"
/db_xref="GeneID:12215458"
CDS 28420..28641
/locus_tag="CDBI1_00100"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197190.1"
/db_xref="GI:384359338"
/db_xref="GeneID:12215458"
/translation="MKPIMNLEEHNAMKEKRVKKMKSKDKPKYDDFEDISFSNKKKTK
KNVRNKNAEFRNNYKNYQYDYEEDFYEPI"
gene complement(28712..29917)
/locus_tag="CDBI1_00105"
/db_xref="GeneID:12215459"
CDS complement(28712..29917)
/locus_tag="CDBI1_00105"
/note="COG0707 UDP-N-acetylglucosamine:LPS
N-acetylglucosamine transferase"
/codon_start=1
/transl_table=11
/product="glycosyl transferase"
/protein_id="YP_006197191.1"
/db_xref="GI:384359339"
/db_xref="GeneID:12215459"
/translation="MSKKVLIMSASTGGGHNRAALAIKEELTSKTLDGEPIECEIIDS
LKLVNNTMDKIISRGYEKSAIYTPKAYGSVYRLSETNLLSKNEFKDNLLITFMAKKFK
KLIRSEKPDLIIGTHPFPMIALSTLKKNFNLHNNESNAYTEHFYKHYTNTINVPPLIS
VLTDYTTHSTWIQNEIDYYIVGHEYVKELLVFDGVGPSKIRTFGIPVEKSFLSHRDKD
IVLSELNLSPDKLTVLLMGGSFGAGNIKETLDELLDTDRDFQILVITGKNESLKEKIE
KKLMSRYHDKNVCVLGYTDKMNDILASIDVLVSKPGGLTTTEALLKDVPMIVPYYIPG
QEEENLDFLSNCGAALRTTKKYNLSILLKVLIDDPSRLEMLKRNVKSIRKSNSAQNIA
NLILNIISG"
misc_feature complement(28763..29911)
/locus_tag="CDBI1_00105"
/note="diacylglycerol glucosyltransferase; Provisional;
Region: PRK13609"
/db_xref="CDD:184180"
misc_feature complement(29297..29872)
/locus_tag="CDBI1_00105"
/note="Monogalactosyldiacylglycerol (MGDG) synthase;
Region: MGDG_synth; pfam06925"
/db_xref="CDD:191643"
misc_feature complement(<28928..29224)
/locus_tag="CDBI1_00105"
/note="Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The acceptor
molecule can be a lipid, a protein, a heterocyclic
compound, or another carbohydrate...; Region:
Glycosyltransferase_GTB_type; cl10013"
/db_xref="CDD:214166"
gene 30424..31936
/locus_tag="CDBI1_r18390"
/db_xref="GeneID:12215460"
rRNA 30424..31936
/locus_tag="CDBI1_r18390"
/product="16S ribosomal RNA"
/db_xref="GeneID:12215460"
misc_feature 32238..35059
/note="potential RNA of insufficient length (23S ribosomal
RNA)"
gene 35290..35406
/locus_tag="CDBI1_r18368"
/db_xref="GeneID:12215461"
rRNA 35290..35406
/locus_tag="CDBI1_r18368"
/product="5S ribosomal RNA"
/db_xref="GeneID:12215461"
gene 35413..35487
/locus_tag="CDBI1_t18220"
/db_xref="GeneID:12215462"
tRNA 35413..35487
/locus_tag="CDBI1_t18220"
/product="tRNA-Asn"
/db_xref="GeneID:12215462"
gene 35494..35579
/locus_tag="CDBI1_t18222"
/db_xref="GeneID:12215463"
tRNA 35494..35579
/locus_tag="CDBI1_t18222"
/product="tRNA-Leu"
/db_xref="GeneID:12215463"
gene 35595..35670
/locus_tag="CDBI1_t18224"
/db_xref="GeneID:12215464"
tRNA 35595..35670
/locus_tag="CDBI1_t18224"
/product="tRNA-Met"
/db_xref="GeneID:12215464"
gene 35678..35752
/locus_tag="CDBI1_t18226"
/db_xref="GeneID:12215465"
tRNA 35678..35752
/locus_tag="CDBI1_t18226"
/product="tRNA-Glu"
/db_xref="GeneID:12215465"
gene 35762..35835
/locus_tag="CDBI1_t18228"
/db_xref="GeneID:12215466"
tRNA 35762..35835
/locus_tag="CDBI1_t18228"
/product="tRNA-Gly"
/db_xref="GeneID:12215466"
gene 35841..35916
/locus_tag="CDBI1_t18230"
/db_xref="GeneID:12215467"
tRNA 35841..35916
/locus_tag="CDBI1_t18230"
/product="tRNA-Val"
/db_xref="GeneID:12215467"
gene 35922..35998
/locus_tag="CDBI1_t18232"
/db_xref="GeneID:12215468"
tRNA 35922..35998
/locus_tag="CDBI1_t18232"
/product="tRNA-Asp"
/db_xref="GeneID:12215468"
gene 36008..36082
/locus_tag="CDBI1_t18234"
/db_xref="GeneID:12215469"
tRNA 36008..36082
/locus_tag="CDBI1_t18234"
/product="tRNA-Thr"
/db_xref="GeneID:12215469"
misc_feature complement(36090..36239)
/note="potential protein location (hypothetical protein
CDBI1_00110 [Clostridium difficile BI1]) that overlaps RNA
(tRNA-L)"
gene 36097..36181
/locus_tag="CDBI1_t18236"
/db_xref="GeneID:12215470"
tRNA 36097..36181
/locus_tag="CDBI1_t18236"
/product="tRNA-Tyr"
/db_xref="GeneID:12215470"
gene 36190..36273
/locus_tag="CDBI1_t18238"
/db_xref="GeneID:12215471"
tRNA 36190..36273
/locus_tag="CDBI1_t18238"
/product="tRNA-Leu"
/db_xref="GeneID:12215471"
gene 36303..36379
/locus_tag="CDBI1_t18240"
/db_xref="GeneID:12215472"
tRNA 36303..36379
/locus_tag="CDBI1_t18240"
/product="tRNA-Arg"
/db_xref="GeneID:12215472"
gene 36387..36462
/locus_tag="CDBI1_t18242"
/db_xref="GeneID:12215473"
tRNA 36387..36462
/locus_tag="CDBI1_t18242"
/product="tRNA-Gln"
/db_xref="GeneID:12215473"
gene 36551..36639
/locus_tag="CDBI1_t18244"
/db_xref="GeneID:12215474"
tRNA 36551..36639
/locus_tag="CDBI1_t18244"
/product="tRNA-Ser"
/db_xref="GeneID:12215474"
gene 36643..36718
/locus_tag="CDBI1_t18246"
/db_xref="GeneID:12215475"
tRNA 36643..36718
/locus_tag="CDBI1_t18246"
/product="tRNA-Phe"
/db_xref="GeneID:12215475"
gene 36725..36801
/locus_tag="CDBI1_t18248"
/db_xref="GeneID:12215476"
tRNA 36725..36801
/locus_tag="CDBI1_t18248"
/product="tRNA-Met"
/db_xref="GeneID:12215476"
gene 36813..36889
/locus_tag="CDBI1_t18250"
/db_xref="GeneID:12215477"
tRNA 36813..36889
/locus_tag="CDBI1_t18250"
/product="tRNA-Met"
/db_xref="GeneID:12215477"
gene 36913..36989
/locus_tag="CDBI1_t18252"
/db_xref="GeneID:12215478"
tRNA 36913..36989
/locus_tag="CDBI1_t18252"
/product="tRNA-Pro"
/db_xref="GeneID:12215478"
gene 36997..37073
/locus_tag="CDBI1_t18254"
/db_xref="GeneID:12215479"
tRNA 36997..37073
/locus_tag="CDBI1_t18254"
/product="tRNA-His"
/db_xref="GeneID:12215479"
gene 37082..37157
/locus_tag="CDBI1_t18256"
/db_xref="GeneID:12215480"
tRNA 37082..37157
/locus_tag="CDBI1_t18256"
/product="tRNA-Lys"
/db_xref="GeneID:12215480"
gene 37165..37238
/locus_tag="CDBI1_t18258"
/db_xref="GeneID:12215481"
tRNA 37165..37238
/locus_tag="CDBI1_t18258"
/product="tRNA-Cys"
/db_xref="GeneID:12215481"
gene 37245..37319
/locus_tag="CDBI1_t18260"
/db_xref="GeneID:12215482"
tRNA 37245..37319
/locus_tag="CDBI1_t18260"
/product="tRNA-Asn"
/db_xref="GeneID:12215482"
gene 37325..37410
/locus_tag="CDBI1_t18262"
/db_xref="GeneID:12215483"
tRNA 37325..37410
/locus_tag="CDBI1_t18262"
/product="tRNA-Leu"
/db_xref="GeneID:12215483"
gene 37426..37501
/locus_tag="CDBI1_t18264"
/db_xref="GeneID:12215484"
tRNA 37426..37501
/locus_tag="CDBI1_t18264"
/product="tRNA-Met"
/db_xref="GeneID:12215484"
gene 37509..37583
/locus_tag="CDBI1_t18266"
/db_xref="GeneID:12215485"
tRNA 37509..37583
/locus_tag="CDBI1_t18266"
/product="tRNA-Glu"
/db_xref="GeneID:12215485"
gene 37593..37666
/locus_tag="CDBI1_t18268"
/db_xref="GeneID:12215486"
tRNA 37593..37666
/locus_tag="CDBI1_t18268"
/product="tRNA-Gly"
/db_xref="GeneID:12215486"
gene 37672..37747
/locus_tag="CDBI1_t18270"
/db_xref="GeneID:12215487"
tRNA 37672..37747
/locus_tag="CDBI1_t18270"
/product="tRNA-Val"
/db_xref="GeneID:12215487"
gene 37753..37829
/locus_tag="CDBI1_t18272"
/db_xref="GeneID:12215488"
tRNA 37753..37829
/locus_tag="CDBI1_t18272"
/product="tRNA-Asp"
/db_xref="GeneID:12215488"
gene 37839..37913
/locus_tag="CDBI1_t18274"
/db_xref="GeneID:12215489"
tRNA 37839..37913
/locus_tag="CDBI1_t18274"
/product="tRNA-Thr"
/db_xref="GeneID:12215489"
gene 37928..38012
/locus_tag="CDBI1_t18276"
/db_xref="GeneID:12215490"
tRNA 37928..38012
/locus_tag="CDBI1_t18276"
/product="tRNA-Tyr"
/db_xref="GeneID:12215490"
gene 38022..38105
/locus_tag="CDBI1_t18278"
/db_xref="GeneID:12215491"
tRNA 38022..38105
/locus_tag="CDBI1_t18278"
/product="tRNA-Leu"
/db_xref="GeneID:12215491"
gene 38129..38203
/locus_tag="CDBI1_t18280"
/db_xref="GeneID:12215492"
tRNA 38129..38203
/locus_tag="CDBI1_t18280"
/product="tRNA-Gly"
/db_xref="GeneID:12215492"
gene 38228..38304
/locus_tag="CDBI1_t18282"
/db_xref="GeneID:12215493"
tRNA 38228..38304
/locus_tag="CDBI1_t18282"
/product="tRNA-Arg"
/db_xref="GeneID:12215493"
gene 38314..38389
/locus_tag="CDBI1_t18284"
/db_xref="GeneID:12215494"
tRNA 38314..38389
/locus_tag="CDBI1_t18284"
/product="tRNA-Gln"
/db_xref="GeneID:12215494"
gene 38398..38473
/locus_tag="CDBI1_t18286"
/db_xref="GeneID:12215495"
tRNA 38398..38473
/locus_tag="CDBI1_t18286"
/product="tRNA-Lys"
/db_xref="GeneID:12215495"
gene 38476..38564
/locus_tag="CDBI1_t18288"
/db_xref="GeneID:12215496"
tRNA 38476..38564
/locus_tag="CDBI1_t18288"
/product="tRNA-Ser"
/db_xref="GeneID:12215496"
gene 38568..38643
/locus_tag="CDBI1_t18290"
/db_xref="GeneID:12215497"
tRNA 38568..38643
/locus_tag="CDBI1_t18290"
/product="tRNA-Phe"
/db_xref="GeneID:12215497"
gene 38650..38726
/locus_tag="CDBI1_t18292"
/db_xref="GeneID:12215498"
tRNA 38650..38726
/locus_tag="CDBI1_t18292"
/product="tRNA-Met"
/db_xref="GeneID:12215498"
gene 38738..38814
/locus_tag="CDBI1_t18294"
/db_xref="GeneID:12215499"
tRNA 38738..38814
/locus_tag="CDBI1_t18294"
/product="tRNA-Met"
/db_xref="GeneID:12215499"
gene 38832..38908
/locus_tag="CDBI1_t18296"
/db_xref="GeneID:12215500"
tRNA 38832..38908
/locus_tag="CDBI1_t18296"
/product="tRNA-His"
/db_xref="GeneID:12215500"
gene 38917..38992
/locus_tag="CDBI1_t18298"
/db_xref="GeneID:12215501"
tRNA 38917..38992
/locus_tag="CDBI1_t18298"
/product="tRNA-Lys"
/db_xref="GeneID:12215501"
gene 39000..39073
/locus_tag="CDBI1_t18300"
/db_xref="GeneID:12215502"
tRNA 39000..39073
/locus_tag="CDBI1_t18300"
/product="tRNA-Cys"
/db_xref="GeneID:12215502"
gene 39081..39157
/locus_tag="CDBI1_t18302"
/db_xref="GeneID:12215503"
tRNA 39081..39157
/locus_tag="CDBI1_t18302"
/product="tRNA-Arg"
/db_xref="GeneID:12215503"
gene 39170..39245
/locus_tag="CDBI1_t18304"
/db_xref="GeneID:12215504"
tRNA 39170..39245
/locus_tag="CDBI1_t18304"
/product="tRNA-Val"
/db_xref="GeneID:12215504"
gene 39321..39734
/locus_tag="CDBI1_00115"
/db_xref="GeneID:12215505"
CDS 39321..39734
/locus_tag="CDBI1_00115"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197192.1"
/db_xref="GI:384359340"
/db_xref="GeneID:12215505"
/translation="MYIVIGNEIVDSEELKIIIDENSKFKVEKDLSKSTKREDVIAYQ
LSIDLNYLDSLINEQCNLSSLSDEEKFDEYMTLSDELALDLEELMPKYTIINARAYKL
DEVDGIVKIILAVAYADLGHLKLSDVVKRLSRQVD"
gene 40043..43474
/locus_tag="CDBI1_00120"
/db_xref="GeneID:12215506"
CDS 40043..43474
/locus_tag="CDBI1_00120"
/EC_number="6.4.1.1"
/note="COG1038 Pyruvate carboxylase"
/codon_start=1
/transl_table=11
/product="pyruvate carboxylase"
/protein_id="YP_006197193.1"
/db_xref="GI:384359341"
/db_xref="GeneID:12215506"
/translation="MLKKFNKILVANRGEIAIRIFRACSELGIKSVGIYSKEDKYGLF
RTKADESYLIGEGKGPIDAYLDMDGIIDLAKRKKVDAIHPGYGFLAENAEFARKCEEN
GITFIGPSSKVMNMMGDKINSKKIAKEVNVQTIPGVEKAIRSTEEAKEVANKIGYPVM
IKASNGGGGRGMRIVHREEDLELEYETACSESRKAFGEDIIFIEKYIADPKHIEVQIL
GDNYGNIVHLYERDCSVQRRHQKIIEYAPAFSLDDKVRKEICEDAVKLSKHVGYSNAG
TLEFLVDANGGHYFIEMNTRVQVEHTVTEMVTGIDIVQSQILIAQGYSLDSEEINIKS
QDDVEIRGYSIQCRITTEDPKNKFMPDTGKIQVYRTGSGFGIRLDGGNGFTGANISPH
YDSLLVKTISWDRTFQGAINKTIRSIKELRVRGVKTNVGFLVNVLNNPIFSNGKCSTK
FIDENPDLFEITESKDRGTKLLQFIGDVIVNDNACKEKPLFDALHDPRMDKDGSKSEG
SKILFDKLGKSAYIEKIKNDKKLLLTDTTMRDAHQSLLATRIRTYDLLKAAKPTEKYQ
KDLFSLEMWGGATYDVAYRFLKESPWRRLQKLREEIPSIMFQMLLRASNGVGYKNYPD
NVIEEFTKESARQGIDVFRIFDSLNWVENMKPSINTALETGKIVEATMCYTGDILDKT
KTKYNLEYYIKMAQELESLGADIIAIKDMSGLLKPYSAYTLVKELKKNVKAPIHLHTH
DTSGNGVATCLMASEAGVDIIDAALESMAGLTSQPSLNAIVEALKNTERDTGIDLFGY
DELGKYYKDLRKVYNKFESDLTNSCAEIYNFEIPGGQYTNLKPQADSLGLVNRFDEVK
EKYKEANEVVGDIIKVTPSSKVVGDLAIFMTKNKLDKDNIIEEGKNLSFPDSVVDYCK
GMIGQPEGGIPKDLQEVVLKGEEAITVRPGSLLPAEDFDEIAKYLNEKYDINANIRNV
ISYALYPKVYEDYIKHLQHYNDISKLESDVFFYGLNKNEECEVEIEEGKVLTIRLVEI
GEVKENGFRTIGFELNGMVREVEIKDKNFSGKINNVEKADMNDPLQIGASIPGKVIKI
MVKEEDEVKANQPLIVIEAMKMETIIVAKTDGVIKSIKVKEDDMVEDKQLLMIMK"
misc_feature 40043..43471
/locus_tag="CDBI1_00120"
/note="pyruvate carboxylase; Reviewed; Region: PRK12999"
/db_xref="CDD:183835"
misc_feature 40055..40381
/locus_tag="CDBI1_00120"
/note="Carbamoyl-phosphate synthase L chain, N-terminal
domain; Region: CPSase_L_chain; pfam00289"
/db_xref="CDD:201133"
misc_feature 40397..40933
/locus_tag="CDBI1_00120"
/note="ATP-grasp domain; Region: ATP-grasp_4; pfam13535"
/db_xref="CDD:205713"
misc_feature 41078..41401
/locus_tag="CDBI1_00120"
/note="Biotin carboxylase C-terminal domain; Region:
Biotin_carb_C; smart00878"
/db_xref="CDD:197946"
misc_feature 41639..42487
/locus_tag="CDBI1_00120"
/note="Pyruvate carboxylase and Transcarboxylase 5S,
carboxyltransferase domain; Region: DRE_TIM_PC_TC_5S;
cd07937"
/db_xref="CDD:163675"
misc_feature order(41657..41662,41669..41671,41759..41761,41771..41773,
41870..41872,41876..41878,42059..42061,42167..42169,
42254..42256,42260..42262,42362..42364)
/locus_tag="CDBI1_00120"
/note="active site"
/db_xref="CDD:163675"
misc_feature order(41657..41662,41759..41761)
/locus_tag="CDBI1_00120"
/note="catalytic residues [active]"
/db_xref="CDD:163675"
misc_feature order(41660..41662,42167..42169,42254..42256,42260..42262)
/locus_tag="CDBI1_00120"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163675"
misc_feature order(42188..42190,42194..42196,42269..42271,42275..42277,
42281..42283,42293..42298,42338..42343,42347..42349,
42377..42379,42395..42397,42437..42439)
/locus_tag="CDBI1_00120"
/note="homodimer binding site [polypeptide binding]; other
site"
/db_xref="CDD:163675"
misc_feature 43268..43468
/locus_tag="CDBI1_00120"
/note="The biotinyl-domain or biotin carboxyl carrier
protein (BCCP) domain is present in all biotin-dependent
enzymes, such as acetyl-CoA carboxylase, pyruvate
carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
carboxylase, geranyl-CoA carboxylase; Region:
biotinyl_domain; cd06850"
/db_xref="CDD:133459"
misc_feature order(43337..43339,43364..43372,43391..43393)
/locus_tag="CDBI1_00120"
/note="carboxyltransferase (CT) interaction site; other
site"
/db_xref="CDD:133459"
misc_feature 43367..43369
/locus_tag="CDBI1_00120"
/note="biotinylation site [posttranslational
modification]; other site"
/db_xref="CDD:133459"
gene 43716..45644
/locus_tag="CDBI1_00125"
/db_xref="GeneID:12215507"
CDS 43716..45644
/locus_tag="CDBI1_00125"
/note="COG0480 Translation elongation factors (GTPases)"
/codon_start=1
/transl_table=11
/product="putative translation elongation factor"
/protein_id="YP_006197194.1"
/db_xref="GI:384359342"
/db_xref="GeneID:12215507"
/translation="MKVYDSKMLRNVAVLGHSGCGKTNLIETIAYTANTNKIPKLTDK
VNMTYSMGLIPIEYNDYKFNLLDTPGYFDFSGDVVSSLRASDAAIIVIDATAPIQVGT
EKSLELTESIPKIMFINKIDNEKARYKDAIAMLREKYNNKIVPMISPIYKDKNFVKLH
NVFENIDDLEGEFKEQAMSVKEALMELIAETDDQILDKYFNGEELTTEEIQKGIIIGI
QRGDIIPVICGSTINNIGTKEILDTISSYLEPIFTEESKPFRGLVFKTMVDPFVGKMS
YIKITEGVLSKDKDVFNINKNVKEKIANIYTLRNSELVEIEKAKAGDIVVITKVNSLK
TGDTISADKDAEALEKIDFPKPQIYYAVTPKNKGDEEKVASVLNKLVEEDPTLHWYRN
TETKQALLGGQGELHIKTIKNKMKDKFGVDVELNDLKVPYRETIKGTADVQGKHKKQS
GGHGQYGDVKIRFERCESDFEFTEEIFGGSVPKQYIPAVEKGLKDSMQKGILAGYPVT
NIKATLYDGSYHDVDSSEMAFKMAASAAFKKGMEEAHPILLEPIMKLKITVPEEYMGD
VMGDINKRRGKIFGMEPDDKGKQIIFAEAPQAETFKYAIDLRAMTQGRGYFEMELERY
GEVPSQFAEKIIGLATAK"
misc_feature 43746..44459
/locus_tag="CDBI1_00125"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
misc_feature 43758..45623
/locus_tag="CDBI1_00125"
/note="elongation factor G; Reviewed; Region: PRK12740"
/db_xref="CDD:183713"
misc_feature 43761..43784
/locus_tag="CDBI1_00125"
/note="G1 box; other site"
/db_xref="CDD:206648"
misc_feature order(43767..43787,43923..43925,44070..44075,44079..44081,
44403..44411)
/locus_tag="CDBI1_00125"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206648"
misc_feature 43854..43856
/locus_tag="CDBI1_00125"
/note="G2 box; other site"
/db_xref="CDD:206648"
misc_feature 43869..43877
/locus_tag="CDBI1_00125"
/note="Switch I region; other site"
/db_xref="CDD:206648"
misc_feature 43914..43925
/locus_tag="CDBI1_00125"
/note="G3 box; other site"
/db_xref="CDD:206648"
misc_feature order(43920..43925,43971..43976)
/locus_tag="CDBI1_00125"
/note="Switch II region; other site"
/db_xref="CDD:206648"
misc_feature 44070..44081
/locus_tag="CDBI1_00125"
/note="G4 box; other site"
/db_xref="CDD:206648"
misc_feature 44403..44411
/locus_tag="CDBI1_00125"
/note="G5 box; other site"
/db_xref="CDD:206648"
misc_feature 44490..44735
/locus_tag="CDBI1_00125"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:58095"
misc_feature 45009..45284
/locus_tag="CDBI1_00125"
/note="Elongation Factor G-like domain IV. This family
includes the translational elongation factor termed EF-2
(for Archaea and Eukarya) and EF-G (for Bacteria),
ribosomal protection proteins that mediate tetracycline
resistance and, an evolutionarily...; Region: EFG_like_IV;
cl02789"
/db_xref="CDD:207734"
misc_feature 45363..45599
/locus_tag="CDBI1_00125"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:58065"
gene 46097..46561
/locus_tag="CDBI1_00130"
/db_xref="GeneID:12215508"
CDS 46097..46561
/locus_tag="CDBI1_00130"
/note="COG4463 Transcriptional repressor of class III
stress genes"
/codon_start=1
/transl_table=11
/product="transcriptional regulator CtsR"
/protein_id="YP_006197195.1"
/db_xref="GI:384359343"
/db_xref="GeneID:12215508"
/translation="MATMTDIIEKFIKDLMEEDNSIQIQRNELANLFSCAPSQINYVL
TTRFTIDRGYYIESKKGGGGYVQIEKIRKSKDGHIRELLNEKIGSQISYKKAKELLEG
LKESDLINERELKLILYAIDDKSLCMPIYELKEKVRSNILKNIIIGLFSIEE"
misc_feature 46100..46546
/locus_tag="CDBI1_00130"
/note="Firmicute transcriptional repressor of class III
stress genes (CtsR); Region: CtsR; pfam05848"
/db_xref="CDD:147806"
gene 46568..47062
/locus_tag="CDBI1_00135"
/db_xref="GeneID:12215509"
CDS 46568..47062
/locus_tag="CDBI1_00135"
/note="COG3880 Uncharacterized protein with conserved CXXC
pairs"
/codon_start=1
/transl_table=11
/product="DNA repair protein"
/protein_id="YP_006197196.1"
/db_xref="GI:384359344"
/db_xref="GeneID:12215509"
/translation="MLCQKCNKNKASVYYNKIVNGEKTEMYLCSECAKENTEMNFNLD
MPFSMMDIFSNLGFQPKKELEEKLVCPKCNTTYSEFKNNGRFGCSECYNAFSSQVNPM
LQNIHGHIEHTGKAPKKSFYKISVENEIKELKEDLDRAIKNEEYELAAQFRDKIKYLK
GSID"
misc_feature 46568..47047
/locus_tag="CDBI1_00135"
/note="Modulator of heat shock repressor CtsR, McsA
[Signal transduction mechanisms]; Region: COG3880"
/db_xref="CDD:33669"
misc_feature 46946..47047
/locus_tag="CDBI1_00135"
/note="UvrB/uvrC motif; Region: UVR; pfam02151"
/db_xref="CDD:145355"
gene 47096..48103
/locus_tag="CDBI1_00140"
/db_xref="GeneID:12215510"
CDS 47096..48103
/locus_tag="CDBI1_00140"
/note="COG3869 Arginine kinase"
/codon_start=1
/transl_table=11
/product="ATP:guanido phosphotransferase"
/protein_id="YP_006197197.1"
/db_xref="GI:384359345"
/db_xref="GeneID:12215510"
/translation="MKSRVRLARNLNNYPFPNKLDKECAMEIIEKVKNAFINSNLEQK
EEFDFYKIEDLDQSKKMLMVEEHIISPDLAENDKSAVIVKKDKTISIMINEEDHIRIQ
TICDDLNLEYAYSVANEIDDLLESSLEYAFNTKLGYLTSCPTNTGTGMRASVMMHLPA
LSQLGYMDELYKISSQIGIAIRGIYGERTEALGNIYQISNQLTLGRTESNIIENVSGL
TKDAISKEIKAREILQKKLGIKLEDKIFRSIGTLENSRVMSSAEAMSHLSNIKMGIEM
NYIDKLDLRAIEQLMIGIQPAHQSIMYKSDDVENRDINRATYIRETLEKLRGGMNCEL
Q"
misc_feature 47096..48061
/locus_tag="CDBI1_00140"
/note="ATP:guanido phosphotransferase; Provisional;
Region: PRK01059"
/db_xref="CDD:179213"
misc_feature 47096..47782
/locus_tag="CDBI1_00140"
/note="Phosphagen (guanidino) kinases found in bacteria;
Region: bacterial_phosphagen_kinase; cd07930"
/db_xref="CDD:153077"
misc_feature order(47099..47101,47105..47107,47111..47113,47294..47296,
47369..47371,47393..47395,47546..47548,47552..47560,
47639..47641,47645..47647,47651..47656,47684..47686)
/locus_tag="CDBI1_00140"
/note="ADP binding site [chemical binding]; other site"
/db_xref="CDD:153077"
misc_feature order(47381..47383,47519..47521,47657..47662)
/locus_tag="CDBI1_00140"
/note="phosphagen binding site; other site"
/db_xref="CDD:153077"
misc_feature order(47630..47674,47678..47695)
/locus_tag="CDBI1_00140"
/note="substrate specificity loop; other site"
/db_xref="CDD:153077"
gene 48090..50537
/locus_tag="CDBI1_00145"
/db_xref="GeneID:12215511"
CDS 48090..50537
/locus_tag="CDBI1_00145"
/note="'COG0542 ATPases with chaperone activity,
ATP-binding subunit'"
/codon_start=1
/transl_table=11
/product="ATP-dependent Clp protease"
/protein_id="YP_006197198.1"
/db_xref="GI:384359346"
/db_xref="GeneID:12215511"
/translation="MNFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEG
IAAKVLSKVGFTEAYLEGKIVDMEGKGEEISEDIVLSPRSKQILELSGMFANKLKTNY
IGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMMGISDKNQYKAENSYTGNQ
NQAESKVLDKYGRNLTLYAKQNKIDPVIGREKEIQRVIQILSRRTKNNPVLIGDPGVG
KTAIAEGLATNIALGNVPETLKNKTLYSLEMGSLLAGAKYRGEFEERIKEVVDEVVKN
GNIILFIDEMHTIIGAGSTGEGSIDASNILKPALARGEIQVIGATTIDEYRKHVEKDS
ALERRFQPVMVDEPTKEDSIKILEGLRDKYEAHHKVKITDDAIKAAVELSTRYISDRY
LPDKAIDLIDEAASKVRLKENTPPSEIKKLELEIENIDKEKEEAVRCQDFEKAAKIRD
EQGLLKKQLEDVRERWNKSSKHSDLVDGEVIAEVVGLWTGIPVNKILEEEADRLLRLE
EILHNRVIGQEQAVKSISKAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTELSKALAEV
QFGDENQIIRIDMSEYMEKHAVSRMIGSPPGYVGHDEGGQLTEKVRRNPYSVILFDEI
EKAHPDVFNILLQILDDGRLTDSKGRTVDFKNTIVIMTSNVGASTIGRQKTLGFSIAK
GDEEEKSQYEKMKENIMGELKQRFRPEFLNRIDDIIVFHSLNENHISKIVLLMAAKLQ
ERLKEMDIKLEMSDEAVKLISKSGFDLEYGARPLKRALQKELEDELSEAILKGNVKKG
SNVVAKVKDEKIVFETK"
misc_feature 48096..50516
/locus_tag="CDBI1_00145"
/note="Clp protease ATP binding subunit; Region: clpC;
CHL00095"
/db_xref="CDD:177027"
misc_feature 48372..48518
/locus_tag="CDBI1_00145"
/note="Clp amino terminal domain; Region: Clp_N;
pfam02861"
/db_xref="CDD:202433"
misc_feature 48651..49112
/locus_tag="CDBI1_00145"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 48726..48749
/locus_tag="CDBI1_00145"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(48729..48752,48939..48941,49053..49055)
/locus_tag="CDBI1_00145"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 48927..48944
/locus_tag="CDBI1_00145"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 49104..49106
/locus_tag="CDBI1_00145"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 49635..50081
/locus_tag="CDBI1_00145"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 49737..49760
/locus_tag="CDBI1_00145"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(49740..49763,49953..49955,50079..50081)
/locus_tag="CDBI1_00145"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 49941..49958
/locus_tag="CDBI1_00145"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 50256..50495
/locus_tag="CDBI1_00145"
/note="C-terminal, D2-small domain, of ClpB protein;
Region: ClpB_D2-small; pfam10431"
/db_xref="CDD:204486"
gene 50717..52090
/locus_tag="CDBI1_00150"
/db_xref="GeneID:12215512"
CDS 50717..52090
/locus_tag="CDBI1_00150"
/note="COG1066 Predicted ATP-dependent serine protease"
/codon_start=1
/transl_table=11
/product="DNA repair protein RadA"
/protein_id="YP_006197199.1"
/db_xref="GI:384359347"
/db_xref="GeneID:12215512"
/translation="MAKIKTKYVCQSCGYETAKWLGKCPECTKWNTFVEEIDQKSTKK
EVFIIDKSSSKPVSINSIESKEEERFTTDINELDRVLGGGIVKGSLVLVGGDPGIGKS
TLLIQVSSNVANLGKTVLYITGEESESQIKMRAKRLGINSENLYIFAENNLSIIESYL
ESVNPELIILDSIQTVFSPEISSAPGTVSQIKEGTSKFMKISKKMGISTFIVGHVTKE
GSLAGPKLLEHMVDTVLYFEGERYNTYRLVRAVKNRFGSTNELGVFEMRDLGLVELDN
PSKILISEKPKDVAGSVIISTVEGTRPMLLELQALVSPTSFGIPKRTSTGVDYNRVGM
LLAVLEKRVGLQIQNQDVYINIVGGIKINEPSIDLGIAISVASSFRNIPIDENIAVTG
EVGLTGEVRAVSFIEKRIAECKKLGFKKIVVPRSNYDVVKETKGIEIWPVDNLRQAIN
IVLGRNQ"
misc_feature 50717..52081
/locus_tag="CDBI1_00150"
/note="DNA repair protein RadA; Provisional; Region:
PRK11823"
/db_xref="CDD:183326"
misc_feature 50738..51850
/locus_tag="CDBI1_00150"
/note="Sms (bacterial radA) DNA repair protein. This
protein is not related to archael radA any more than is to
other RecA-like NTPases. Sms has a role in recombination
and recombinational repair and is responsible for the
stabilization or processing of...; Region: Sms; cd01121"
/db_xref="CDD:29987"
misc_feature 50999..51022
/locus_tag="CDBI1_00150"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:29987"
misc_feature order(51002..51004,51014..51022,51077..51079,51083..51085,
51227..51232)
/locus_tag="CDBI1_00150"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29987"
misc_feature 51218..51229
/locus_tag="CDBI1_00150"
/note="Walker B motif; other site"
/db_xref="CDD:29987"
misc_feature <51788..51997
/locus_tag="CDBI1_00150"
/note="Subunit ChlI of Mg-chelatase; Region: ChlI;
cl12214"
/db_xref="CDD:209472"
gene 52093..53163
/locus_tag="CDBI1_00155"
/db_xref="GeneID:12215513"
CDS 52093..53163
/locus_tag="CDBI1_00155"
/note="COG1623 Predicted nucleic-acid-binding protein
(contains the HHH domain)"
/codon_start=1
/transl_table=11
/product="DNA integrity scanning protein DisA"
/protein_id="YP_006197200.1"
/db_xref="GI:384359348"
/db_xref="GeneID:12215513"
/translation="MENFLDNKNMLYALKMISPGTPLRLGLNNVLRAKTGGLIVIATN
EDVMKIVDGGFAINAEYSPSYLYELAKMDGAIVLSGDVKKILFANAQLIPDYFIETSE
TGTRHRTAERVAKQTGAIVIGISQRRNVITVYRGNEKYVVEDISKIFTKANQAIQTLE
KYKTVLDQAVTNLNALEFNDLVTIYDVALVMQKMEMVMRVTSIIEKYVIELGDEGTLV
SMQLEELMGTTRIDQKLIFKDYNKENTEIKELMKKVKNLNSEELIELVNMAKLLGYSG
FSESMDMPIKTRGYRILSKIHRLPTAIIENLVNYFENFQQILDASIEELDEVEGIGEI
RATYIKNGLIKMKQLVLLDRHI"
misc_feature 52108..53160
/locus_tag="CDBI1_00155"
/note="DNA integrity scanning protein DisA; Provisional;
Region: PRK13482"
/db_xref="CDD:184079"
misc_feature 52159..52512
/locus_tag="CDBI1_00155"
/note="DisA bacterial checkpoint controller
nucleotide-binding; Region: DisA_N; pfam02457"
/db_xref="CDD:190315"
misc_feature 52516..52947
/locus_tag="CDBI1_00155"
/note="DisA bacterial checkpoint controller linker region;
Region: DisA-linker; pfam10635"
/db_xref="CDD:151152"
gene 53252..54346
/locus_tag="CDBI1_00160"
/db_xref="GeneID:12215514"
CDS 53252..54346
/locus_tag="CDBI1_00160"
/note="COG4956 Integral membrane protein (PIN domain
superfamily)"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197201.1"
/db_xref="GI:384359349"
/db_xref="GeneID:12215514"
/translation="MIRKVTRILFILLGFTIGITTYLTLMKDFEILTFGKETYGYIAA
VVAGIIIAILGYLIEPWVVNKVKEIAKIVDKELSKYPQTDILLGSMGLIVGFVIAYLL
SGLVNRIPIVGGILSLLLYLFLGYLGMKVALKSKNDLFNIGKLGRLANPIKDKDKDKE
NKKEVKAIPPKVLDTSVIIDGRIADICKTGFIEGKLIIPAFVLEELRHIADSSDDLKR
VRGRRGLDILNIIQKELNIEVEISERDFDDIAEVDSKLLKLAQVLNGKVVTNDYNLNK
VAQFQGVEVLNINELANAIKPVAIPGEDMVVQVVKEGKEAQQGVAYLDDGTMIVVDGG
RKYMNETIKVLVTSVLQTPAGRMIFAKPKN"
misc_feature 53429..54343
/locus_tag="CDBI1_00160"
/note="Integral membrane protein (PIN domain superfamily)
[General function prediction only]; Region: COG4956"
/db_xref="CDD:34564"
misc_feature 53762..54142
/locus_tag="CDBI1_00160"
/note="PIN domain of Thermus Thermophilus Hb8,
uncharacterized Bacillus subtilis YacL, and other
bacterial homologs; Region: PIN_YacL; cd09877"
/db_xref="CDD:189047"
misc_feature order(53771..53773,53864..53866,54008..54010,54062..54064)
/locus_tag="CDBI1_00160"
/note="putative active site [active]"
/db_xref="CDD:189047"
gene 54475..56652
/locus_tag="CDBI1_00165"
/db_xref="GeneID:12215515"
CDS 54475..56652
/locus_tag="CDBI1_00165"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197202.1"
/db_xref="GI:384359350"
/db_xref="GeneID:12215515"
/translation="MRKKIISFLATFIIILTSASQYSFADDMSTRGKVIFIDMNRTSM
SNMLRIKSLREELDNRGYIGLMNIRGDKGSDDRRSYASMGAGGRANVANEEDINFESS
SKDRNIVFESATGKSAKGINNLTINKSINENLNFGEYGSVLGSLGQSLSENGLKASVL
GNSDIIENGQLIKNRNLCLTAMDEYGRIPNGNVDTINKKDLSMPYGISTDYDKLIVET
KEAYKNNDVVFVELGDTYRLDLYKPNLNEKTYESVKDNIEKNIDVYLKNIFSMVEEND
TVYIASAFPSDLDYKNKRRLSPIIKLNGEGKGILSSSTTRREGIVTNLDVGVEILDNF
NIKNQNMVGRKYELINRDDNKEFLMDEYQKIVSISSIRSTILNGFVSIVFLSWIVAMI
AILFRKHISKNYKETTFFILKELLKIGIVMPLSFMITPIMNFKTPLAISLGIIIITLT
IYLISKVLIKNDLKNMLFFTGLTIVIMVIDAGFGSYLMKSNVMSYDCIIGARYYGVGN
EYQGVAIGSAIFTFAILLTYKNIPKWSIIVFSLVILITSASPIMGANVGSAISECVAF
LLFILLIYNVKIDFKKIVLLGIAVLFVLGVFVAIDMILGSNSHLGMFVKEIYFNGPGE
IIQTFSRKIEMNLKLAQTSAWVNILLTGIGVILVLMINQIRYFKQLMDEYPIVFKGFI
ASIAGCLVTLLVNDSGIVSSATAFIYVIVPMITLSINLTALKE"
gene complement(56838..57683)
/locus_tag="CDBI1_00170"
/db_xref="GeneID:12215516"
CDS complement(56838..57683)
/locus_tag="CDBI1_00170"
/note="COG2207 AraC-type DNA-binding domain-containing
proteins"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_006197203.1"
/db_xref="GI:384359351"
/db_xref="GeneID:12215516"
/translation="MNRNNFSHEIIEPIDNLDVNFKLFDDSGSYVANHWHNSLEIIYI
TSGDLQINMEGYTYNLKANECMFINSGIIHSTRCTYQDTSILLQVPLSFLNKYIPDFK
NCYFDFKVNANDNNYKKNSGKVKLILENMREIKLSSPPAANLLFTSLLFELLFELYTN
FKISVGNKNMKKTVLDLSKFEPVLEYTKINYKMPISINKIAKVAHLQPEYFCRKFKQY
MGQTYLEYLNDVRISHIYKDLINTNDTLCSILEAHGFTNTKLFYRIFKEKFKCTPKHI
RKKST"
misc_feature complement(57423..57602)
/locus_tag="CDBI1_00170"
/note="Cupin domain; Region: Cupin_2; pfam07883"
/db_xref="CDD:203791"
misc_feature complement(57000..57116)
/locus_tag="CDBI1_00170"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature complement(56853..57104)
/locus_tag="CDBI1_00170"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
gene 57900..59066
/locus_tag="CDBI1_00175"
/db_xref="GeneID:12215517"
CDS 57900..59066
/locus_tag="CDBI1_00175"
/note="COG2730 Endoglucanase"
/codon_start=1
/transl_table=11
/product="beta-glucosidase"
/protein_id="YP_006197204.1"
/db_xref="GI:384359352"
/db_xref="GeneID:12215517"
/translation="MYIKGVNLGGWLVLEKWMTSSLFEGTEAEDEYYLPRQLSREAYE
SRIKTHRSEYITERDFATIKSMGFNSVRIPVPYFIFGDCEPFIGCVKELDKAFAWADK
YGLSILIDLHTVPGSQNGFDNGGISGICSWSQNPEYVAFTLNVLERLAKRYGMRHELY
GIQILNEPITERMWNIMNVPNRFKAVDKEMARGSKPNSLEFLRDFYIKAYKVMRPYMR
EENVIVFHDAFELKAWKDFMREEEFKNIVLDTHQYLMLAESDGCEQSIDSYLKYIREN
YAKDILQMQKYFPVICGEWSLFNSYACGIDTNGGQSPLNGIESNIDKLSKDDKRELYR
KIAKAQLDAWRNGSGHYYWNYKLLLDTVNEEGWIGWDSWDLGKCVAQEWYPIEY"
misc_feature 57903..>58424
/locus_tag="CDBI1_00175"
/note="Endoglucanase [Carbohydrate transport and
metabolism]; Region: BglC; COG2730"
/db_xref="CDD:32616"
misc_feature 58047..>58403
/locus_tag="CDBI1_00175"
/note="Glycosyl hydrolases family 2, TIM barrel domain;
Region: Glyco_hydro_2_C; cl15381"
/db_xref="CDD:212627"
gene 59088..60734
/locus_tag="CDBI1_00180"
/db_xref="GeneID:12215518"
CDS 59088..60734
/locus_tag="CDBI1_00180"
/note="COG3507 Beta-xylosidase"
/codon_start=1
/transl_table=11
/product="xylan 1,4-beta-xylosidase"
/protein_id="YP_006197205.1"
/db_xref="GI:384359353"
/db_xref="GeneID:12215518"
/translation="MIKNPILPGFNPDPCICRKGDDYYLVVSSFEWFPGIPVYHSKDL
KNWELYTHILTDETKIDLKKLPSSKGIWAPCLTYCEEEDLFYIVYGIMNSMNARYFDV
DNYLITSKDIKGEWSEPVYIHSSGFDASILHDDDGKKWIASLDWETREGYEKPGVICL
VEYCTKKKEIVGYPKRIWSGGTDRGCIEAPHITKRGDYYYIMCAEGGTGYGHSVTMGR
AKNIWRPYEKDSMNPIVTSIPGDFYERHDPDHLKPKYYNPESKLQKSGHGSYIETTSG
EVYLVHLTSRPFVPELRCTLGRETAIQKMKWTKDNWLRMEDESNLAKEYVSESKLEEH
LVSSIPSFDDFDSNVLGLQYYAPRISPLSFADVKSRPGYVRIRGQESRTSLNKVSILA
RKLTSVYARITTKMEFYPEVHQHSAGLIMYYDNMNYINLRKYYSETLGQSALSIIHLE
NGEKTEFLNTRIPIKDIPIYLRLYIQGRKSYFEWSYDEKNYQRIGKVFDTTKFSDEYC
KYGEFTGTFIGLTCADRVKHKHYADFDFFEYIADESKDVD"
misc_feature 59088..60704
/locus_tag="CDBI1_00180"
/note="Beta-xylosidase [Carbohydrate transport and
metabolism]; Region: XynB; COG3507"
/db_xref="CDD:33310"
misc_feature 59097..60032
/locus_tag="CDBI1_00180"
/note="Glycosyl hydrolase family 43, beta-D-xylosidase;
Region: GH43_XYL_1; cd09000"
/db_xref="CDD:185741"
misc_feature order(59124..59126,59175..59177,59301..59306,59466..59471,
59649..59651,59706..59711,59886..59888,59979..59981)
/locus_tag="CDBI1_00180"
/note="inhibitor binding site; inhibition site"
/db_xref="CDD:185741"
misc_feature order(59124..59126,59469..59471,59649..59651)
/locus_tag="CDBI1_00180"
/note="active site"
/db_xref="CDD:185741"
gene 60831..62204
/locus_tag="CDBI1_00185"
/db_xref="GeneID:12215519"
CDS 60831..62204
/locus_tag="CDBI1_00185"
/note="COG2211 Na+/melibiose symporter and related
transporters"
/codon_start=1
/transl_table=11
/product="xylose transporter"
/protein_id="YP_006197206.1"
/db_xref="GI:384359354"
/db_xref="GeneID:12215519"
/translation="MNTEVNVKATTIRYEKISFFERISYGCGDLGCNIIYSAMSAFLL
FYYTNYADVSAAAVGSIMLVSRILDGFSDLTMGIIVDRTKSKYGKARPWILRMAIPFA
IAAVLLFSVPSNLGITSKLIYIFITYNLVSTVIYTAINVPYATLNSLITQNQYERGVL
SIFRMILATCGTLLINGLTLPLVEYFGNNLSAWTKTFFVFGIASIMVFFITFTGTKER
VKAVKQDRNEVIPFKIGIKSLFRNKYWIQITLCLVCIFIVFAINGGSSVYYAKFILGD
EKLFGPINMVSNISQIIAMFMVAPFIKKFGKRNVLIVGSIILISSNVMFIIVGQNYIG
VIFASAIKGIGSAGIASTMFAIVSDTIEYGEWKTGYRTEGLINSASSFGFKVGNGLGS
AILGAVLSIGGYVGTSATQSDLAIVSIKVCFIYLPIFITILQIIIMFFYKLDKEYSTI
LNELNTK"
misc_feature 60873..62099
/locus_tag="CDBI1_00185"
/note="melibiose:sodium symporter; Provisional; Region:
PRK10429; cl15392"
/db_xref="CDD:199528"
misc_feature 60897..62165
/locus_tag="CDBI1_00185"
/note="MFS/sugar transport protein; Region: MFS_2;
pfam13347"
/db_xref="CDD:205527"
gene 62649..63602
/locus_tag="CDBI1_00190"
/db_xref="GeneID:12215520"
CDS 62649..63602
/locus_tag="CDBI1_00190"
/note="'COG2390 Transcriptional regulator, contains sigma
factor-related N-terminal domain'"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_006197207.1"
/db_xref="GI:384359355"
/db_xref="GeneID:12215520"
/translation="MKKIGDLRLMMKCCSLYYEDNLNQQEIANQLGISRPTISRILKE
AFEQGIVKIQIVDVLKNDYQKIERSLERKYKLKEVIVVDDKQDALTQKQELARAVSEY
LTRVVKENDIIGVSIGTTLKEIPRYVEKSNCKNVTFIPLLGGIGDNEIDIHANQIAVS
LARAFGGDFKLLHAPAVMSDLSTKEKLCKDEKIKEVLDLIDKTTIAIVGIGNPMSLNS
TIMASGYMNEADIEDLKKYNSIGAICLQAFDKEGKTSILEFNQRVLGVKLEDLKKIKR
TIGVASGDEKIEAIKASLKAKFINSLAINHSLALKLLEDCD"
misc_feature 62649..63593
/locus_tag="CDBI1_00190"
/note="Transcriptional regulator, contains sigma
factor-related N-terminal domain [Transcription]; Region:
DeoR; COG2390"
/db_xref="CDD:32535"
misc_feature <62694..62792
/locus_tag="CDBI1_00190"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(62697..62699,62715..62720,62748..62750,62754..62759,
62763..62771,62775..62780,62784..62786)
/locus_tag="CDBI1_00190"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
misc_feature 62841..63590
/locus_tag="CDBI1_00190"
/note="Putative sugar-binding domain; Region: Sugar-bind;
pfam04198"
/db_xref="CDD:202929"
gene 63640..64602
/locus_tag="CDBI1_00195"
/db_xref="GeneID:12215600"
CDS 63640..64602
/locus_tag="CDBI1_00195"
/note="'COG1071 Pyruvate/2-oxoglutarate dehydrogenase
complex, dehydrogenase (E1) component, eukaryotic type,
alpha subunit'"
/codon_start=1
/transl_table=11
/product="acetoin:2,6-dichlorophenolindophenol
oxidoreductase subunit alpha"
/protein_id="YP_006197208.1"
/db_xref="GI:384359356"
/db_xref="GeneID:12215600"
/translation="MSISKETLLEMYKRMNQARKFEEKVSWFFARGMVHGTTHLSVGQ
EASSVAAVMALEKGDLVSLTHRGHSQFIGMGIDLNKMMAELMGKETGFCKGKGGSMHI
ADIESGNLGANGVVGGGLTIAPGAALTQQYKKTGKIVLCSFGDGASNEGTFHEGINLS
SIWKLPIIFYCENNLYGMSTSIKRHMNIESIATRAASYGIEGISIDGYNPIEVYETVQ
KAAEKCRRGEGPVLIESRTYRWLGHSKSDANVYRTKEEIESWKAKDPIEFLKNYLIEN
NLSNEDELDKIQEFAKQSIEDAVEFAQNSPNPKIESLLEDVYAD"
misc_feature 63652..64596
/locus_tag="CDBI1_00195"
/note="pyruvate dehydrogenase E1 component, alpha subunit;
Region: PDH_E1_alph_y; TIGR03182"
/db_xref="CDD:188297"
misc_feature 63670..64545
/locus_tag="CDBI1_00195"
/note="Thiamine pyrophosphate (TPP) family, E1 of
PDC_ADC_BCADC subfamily, TPP-binding module; composed of
proteins similar to the E1 components of the human
pyruvate dehydrogenase complex (PDC), the acetoin
dehydrogenase complex (ADC) and the branched chain...;
Region: TPP_E1_PDC_ADC_BCADC; cd02000"
/db_xref="CDD:48163"
misc_feature order(63742..63744,63898..63900,63979..63984,64075..64077,
64081..64092,64099..64101,64111..64113,64123..64125,
64168..64179,64219..64221,64234..64236,64387..64389)
/locus_tag="CDBI1_00195"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:48163"
misc_feature order(63832..63837,63979..63981,63985..63987,64069..64080,
64159..64161,64165..64167,64366..64368)
/locus_tag="CDBI1_00195"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48163"
misc_feature order(63964..63966,63970..63972,63976..63978,63991..63993,
64000..64005,64012..64017,64021..64026,64033..64035,
64090..64095,64111..64116,64123..64125)
/locus_tag="CDBI1_00195"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:48163"
misc_feature order(64351..64371,64375..64377,64378..64404,64426..64434)
/locus_tag="CDBI1_00195"
/note="phosphorylation loop region [posttranslational
modification]"
/db_xref="CDD:48163"
gene 64627..65613
/locus_tag="CDBI1_00200"
/db_xref="GeneID:12215601"
CDS 64627..65613
/locus_tag="CDBI1_00200"
/note="'COG0022 Pyruvate/2-oxoglutarate dehydrogenase
complex, dehydrogenase (E1) component, eukaryotic type,
beta subunit'"
/codon_start=1
/transl_table=11
/product="acetoin:2,6-dichlorophenolindophenol
oxidoreductase subunit beta"
/protein_id="YP_006197209.1"
/db_xref="GI:384359357"
/db_xref="GeneID:12215601"
/translation="MSTRELTYAQAIKEAMSEEMRRDENVIFMGEDIGIYGGAFGVSV
GMIDEFGPERVRDTPISEAAIAGAAAGAAATGLRPIMEVMFMDFVTISMDAIVNQAAK
MRYMFGGKAQVPMVVRCPGGSGTGSAEQHSQSLEAWFCHVPGVKVVAPSTPADAKGLL
KAAIRDNNPVIFVENKLLYRKKGFVPEDDYVIEIGKADIKREGTDVTVITYGRMLQSV
EEAAETLSKENINVEIIDLRTLYPLDKETIVKSVCKTGRVLICHEAAKTGGLGGEISA
LITESESFDYLDAPVKRICGKDVPIPYNPELEKAVVPRVDEIEEAIKSLIVR"
misc_feature 64639..65604
/locus_tag="CDBI1_00200"
/note="Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, beta
subunit [Energy production and conversion]; Region: AcoB;
COG0022"
/db_xref="CDD:30372"
misc_feature 64654..65154
/locus_tag="CDBI1_00200"
/note="Pyrimidine (PYR) binding domain of the beta
subunits of the E1 components of human pyruvate
dehydrogenase complex (E1- PDHc) and related proteins;
Region: TPP_PYR_E1-PDHc-beta_like; cd07036"
/db_xref="CDD:132919"
misc_feature order(64696..64698,64702..64704,64720..64722,64786..64788,
64795..64797,64801..64818,64825..64830,64834..64842,
64897..64899,64906..64911,64936..64941,65005..65007,
65014..65016,65059..65064,65125..65130)
/locus_tag="CDBI1_00200"
/note="alpha subunit interface [polypeptide binding];
other site"
/db_xref="CDD:132919"
misc_feature order(64717..64719,64804..64806,64810..64812,64888..64890,
64897..64899)
/locus_tag="CDBI1_00200"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132919"
misc_feature order(64720..64722,64795..64797,64801..64812,64894..64899,
64903..64905,64918..64920,64930..64932,64939..64941,
65005..65007,65011..65016,65038..65040,65044..65049,
65053..65055)
/locus_tag="CDBI1_00200"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:132919"
misc_feature 65209..65565
/locus_tag="CDBI1_00200"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene 65626..66672
/locus_tag="CDBI1_00205"
/db_xref="GeneID:12215602"
CDS 65626..66672
/locus_tag="CDBI1_00205"
/note="'COG0508 Pyruvate/2-oxoglutarate dehydrogenase
complex, dihydrolipoamide acyltransferase (E2) component,
and related enzymes'"
/codon_start=1
/transl_table=11
/product="E2 component of acetoin dehydrogenase enzyme
system (dihydrolipoamide acetyltransferase)"
/protein_id="YP_006197210.1"
/db_xref="GI:384359358"
/db_xref="GeneID:12215602"
/translation="MVANKIKATPAARSQARKDNIKLDRLIGSGENGRIHLVDVLNYL
KDNKANTTPLARRIAEDLNIDLETIVGTGYSGKIRKCDVEKLTAKETIVSNNTSKYSE
KKELKIENENSSMFNTVEGIFEKPNPMRATVAKRMSESYFSAPVFTFNIEVDATELKV
LRAKLIDTVKESTGVKLTMTDLIVMAVSKILPNHQALNSAWTDEGIFRYKDVNIAIAV
GLDEGLYVPVVKNANKKSLKEIAKESKELAEKVKTGKLMPADQEGNTFTISNVGMYGI
TTFTPIINMPSSAILGVGATQDKFVPVNGEAKIKPIMNLSLTSDHRVIDGTVAAKFLK
DLKELLENPLSMLV"
misc_feature 65626..66669
/locus_tag="CDBI1_00205"
/note="dihydrolipoamide acetyltransferase; Provisional;
Region: PRK14843"
/db_xref="CDD:184847"
misc_feature 65635..65751
/locus_tag="CDBI1_00205"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
misc_feature 65779..65880
/locus_tag="CDBI1_00205"
/note="e3 binding domain; Region: E3_binding; pfam02817"
/db_xref="CDD:202412"
misc_feature 66034..66669
/locus_tag="CDBI1_00205"
/note="2-oxoacid dehydrogenases acyltransferase (catalytic
domain); Region: 2-oxoacid_dh; pfam00198"
/db_xref="CDD:201074"
gene 66839..68569
/locus_tag="CDBI1_00210"
/db_xref="GeneID:12215603"
CDS 66839..68569
/locus_tag="CDBI1_00210"
/note="'COG0508 Pyruvate/2-oxoglutarate dehydrogenase
complex, dihydrolipoamide acyltransferase (E2) component,
and related enzymes'"
/codon_start=1
/transl_table=11
/product="E3 component of acetoin dehydrogenase enzyme
system (dihydrolipoyl dehydrogenase)"
/protein_id="YP_006197211.1"
/db_xref="GI:384359359"
/db_xref="GeneID:12215603"
/translation="MSVEVIMPKAGVAMEEGTIVSWLKQEGEEVKIGEPILEITTDKV
NMEIESEGEGTLAVIIHKEEGEVLPVFTVIGVIAEKGENQEEVKAKYLSGNVSKEDIV
EENQNIEVKEEKINKKECNHDYDVVVIGGGPGGYLSALKAALLGGRVALVEENILGGT
CLNRGCIPTKTYIKTAEILEEIDQLSKRGVKVTVDKEQDIKKAIKYKNRVVKKLTAGV
GGLLKSRDVDVFNLKASVKEEHKVILSDGKVLDTENIIIATGSKVRILPIKGIESNLI
ITSTEALDLETVPEELVIIGGGVIGCEFAEIFNSRGSKVTIVEMEDRVIPRMDKELSE
SLKYSLSKKGINVLTKKKVSEFKEEGNNILVCIEGEVPIKADLCLYAIGREANLSGIE
DLDIKIDKGSIVVNSKMETSIPSIYAVGDVTGGVMLAHAAFKMGEVAASNALGVNKEV
DLGALPSCVYTIPEVASVGITEEDARKKYNVKVGKFNFAGNGRALASGQEQGYVKVVA
DAKYGEILGIHMFGCGVAELINHAASFKALEIPTDEASELIFGHPCTSEALMEALADV
NGECLHLPKK"
misc_feature 66845..67069
/locus_tag="CDBI1_00210"
/note="Lipoyl domain of the dihydrolipoyl acyltransferase
component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
dehydrogenase multienzyme complexes, like pyruvate
dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
and branched-chain 2-oxo acid...; Region: lipoyl_domain;
cd06849"
/db_xref="CDD:133458"
misc_feature order(66935..66937,66956..66973,66983..66985)
/locus_tag="CDBI1_00210"
/note="E3 interaction surface; other site"
/db_xref="CDD:133458"
misc_feature 66965..66967
/locus_tag="CDBI1_00210"
/note="lipoyl attachment site [posttranslational
modification]; other site"
/db_xref="CDD:133458"
misc_feature 67208..68554
/locus_tag="CDBI1_00210"
/note="dihydrolipoamide dehydrogenase; Region:
lipoamide_DH; TIGR01350"
/db_xref="CDD:211643"
misc_feature 67742..67948
/locus_tag="CDBI1_00210"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
misc_feature 68204..68524
/locus_tag="CDBI1_00210"
/note="Pyridine nucleotide-disulphide oxidoreductase,
dimerisation domain; Region: Pyr_redox_dim; pfam02852"
/db_xref="CDD:202431"
gene 68987..71935
/locus_tag="CDBI1_00215"
/db_xref="GeneID:12215604"
CDS 68987..71935
/locus_tag="CDBI1_00215"
/note="COG1221 Transcriptional regulators containing an
AAA-type ATPase domain and a DNA-binding domain"
/codon_start=1
/transl_table=11
/product="transcription antiterminator"
/protein_id="YP_006197212.1"
/db_xref="GI:384359360"
/db_xref="GeneID:12215604"
/translation="MRQRIKNLIENEDKKNPLTDEAISSRLNIRREDVTFLRNELKIE
DSRQRRKVVLIKAIKDILKEEKTINKNDITRRLNSIGFTVSRFTVIQYLKEIQDSGDL
KLDKESDDKKEEIINNRENKDIAFDKLIGSSGSLSTIIKLAKAAILYPPHGLHTIIMG
PTGVGKSELAECMYKFAVESSRFPKNAPFIVFNAADYSENPQLLLSQLFGHVKGAFTG
ADENKEGLVSKADGGILFIDEIHRLPHEGQEILFQLIDKGMVRKLGETRLTHKIDVMI
ISATSEPIDSHLLNTFKRRIPVTIEIPELVARPLNERFDIINNFFLIEAQRMGANIHI
KSDVLKALMLYDCIGNVGQLRSDIQVACARGLLNQLTNKLKEVNISISDVPGYVKQGL
IKIRNCRGKIENYVDGDLIIDSNLQGEIEKKNEDIYTFPDEIYKLTERRHIDLLEQGL
DFDVINRIIGGELESCIQKYIKQVKKVSISNNLPDISPIVGKYIVELTYEVIKIASQY
LSSLEPNLHLCLAVHLKAAFERLKEGKVISNAHLKEIIGNYPLEYSVAEKVAQYLKER
YNINLPKEEIGIIAIYFKMSSRRDMSEQKKIGVLLMAHGRVASSVCEVTNKLLGINHA
RYLDMPFEKKPEEMIEEATTIIKDIDEGRGVIILVDMGSLSYFGDIISGKTGINIRTI
SRFDTLLSIEVIRRAVLPDLTIDEIVDEVKGIEPQVKEKVSKCNNTKVDFRKPIILTL
CITGLGGACKIKKILEENIKSITEKVDIEPIGMIEYPSLDLEIKQISNDKNVIAIVGT
IDPQIANIPFFSLVDINDKAKLNQINNLIDTNQIGETNKKYELSDLIHKEDIFVDLQV
KSKEEVLKYMSKKLREKGYVTKNFYKKVVERDNLFPTELSDEIAIPHTDGIDVIRPAI
SIAILKKPIVWSKSKVKIILLLAVDQKCFNPLSTLLSFIETDEFKKIKNIKDRDFIRE
MILDGVNENN"
misc_feature <68987..69139
/locus_tag="CDBI1_00215"
/note="Sigma-54, DNA binding domain; Region: Sigma54_DBD;
pfam04552"
/db_xref="CDD:113327"
misc_feature 69437..69898
/locus_tag="CDBI1_00215"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 69440..69880
/locus_tag="CDBI1_00215"
/note="ATPases associated with a variety of cellular
activities; Region: AAA; smart00382"
/db_xref="CDD:197690"
misc_feature 69464..69487
/locus_tag="CDBI1_00215"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(69467..69490,69698..69700,69827..69829)
/locus_tag="CDBI1_00215"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 69686..69703
/locus_tag="CDBI1_00215"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 69869..69871
/locus_tag="CDBI1_00215"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 70481..70744
/locus_tag="CDBI1_00215"
/note="PRD domain; Region: PRD; pfam00874"
/db_xref="CDD:201484"
misc_feature 70775..71137
/locus_tag="CDBI1_00215"
/note="PTS_IIA, PTS system, mannose/sorbose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_man; cl00025"
/db_xref="CDD:206789"
misc_feature order(70796..70798,70838..70843,70871..70873,70973..70975,
71069..71071)
/locus_tag="CDBI1_00215"
/note="active pocket/dimerization site"
/db_xref="CDD:28890"
misc_feature order(70796..70798,70964..70966,70973..70975)
/locus_tag="CDBI1_00215"
/note="active site"
/db_xref="CDD:28890"
misc_feature 70796..70798
/locus_tag="CDBI1_00215"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:28890"
misc_feature 71519..71908
/locus_tag="CDBI1_00215"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:29266"
misc_feature order(71645..71647,71693..71695)
/locus_tag="CDBI1_00215"
/note="active site"
/db_xref="CDD:29266"
misc_feature 71693..71695
/locus_tag="CDBI1_00215"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29266"
gene 71913..72377
/locus_tag="CDBI1_00220"
/db_xref="GeneID:12215605"
CDS 71913..72377
/locus_tag="CDBI1_00220"
/note="COG1762 Phosphotransferase system
mannitol/fructose-specific IIA domain (Ntr-type)"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIA"
/protein_id="YP_006197213.1"
/db_xref="GI:384359361"
/db_xref="GeneID:12215605"
/translation="MESMKIISSNLIFKNIEVSNNEDALKFLGQRLFDEQYVKESYIQ
AVVAREKKYATGLPTEIYGVAIPHTDIVHVNEPGIAIGILNKPVKFIMMGTDDTEIDV
KVVFMLAVKEPQEQLQLLEKLMTIFQDKNILNNIVDLSEESVSDLLNSKLKN"
misc_feature 71931..72338
/locus_tag="CDBI1_00220"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:29266"
misc_feature order(72057..72059,72114..72116)
/locus_tag="CDBI1_00220"
/note="active site"
/db_xref="CDD:29266"
misc_feature 72114..72116
/locus_tag="CDBI1_00220"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29266"
gene 72505..72792
/locus_tag="CDBI1_00225"
/db_xref="GeneID:12215606"
CDS 72505..72792
/locus_tag="CDBI1_00225"
/note="'COG3414 Phosphotransferase system,
galactitol-specific IIB component'"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIB"
/protein_id="YP_006197214.1"
/db_xref="GI:384359362"
/db_xref="GeneID:12215606"
/translation="MTKKILVACGTGVCTSTIAINKLKKALQDIGKLDMVNITQCKVV
EVASKAPDYDLIICTTQVSSSIKTPVINGLPFLTGVGMDKLINDVLEELEL"
misc_feature 72511..72783
/locus_tag="CDBI1_00225"
/note="PTS_IIB_galactitol: subunit IIB of enzyme II (EII)
of the galactitol-specific
phosphoenolpyruvate:carbohydrate phosphotransferase system
(PTS). In this system, EII is a galactitol-specific
permease with two cytoplasmic domains (IIA and IIB) and
a...; Region: PTS_IIB_galactitol; cd05566"
/db_xref="CDD:99908"
misc_feature order(72529..72540,72544..72552)
/locus_tag="CDBI1_00225"
/note="P-loop; other site"
/db_xref="CDD:99908"
misc_feature order(72529..72531,72535..72540,72547..72552)
/locus_tag="CDBI1_00225"
/note="active site"
/db_xref="CDD:99908"
misc_feature 72529..72531
/locus_tag="CDBI1_00225"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:99908"
gene 72869..74218
/locus_tag="CDBI1_00230"
/db_xref="GeneID:12215607"
CDS 72869..74218
/locus_tag="CDBI1_00230"
/note="'COG3775 Phosphotransferase system,
galactitol-specific IIC component'"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIC"
/protein_id="YP_006197215.1"
/db_xref="GI:384359363"
/db_xref="GeneID:12215607"
/translation="MEILNFIVGLGAQVMMPIIICIFGLILGTKLGKSLRAGLTVGVG
FIGLNTIIALLTDNLGPATQQMVKNLGLSLSIIDVGWPAASAIAFASTVGALIIPIGL
VVNIVMLITNTTQTVDVDIWDYWHFAFTGALVAGATQSVMWGVFAAVANMVIVLVMAD
LTAPGIEEYLGMPGISLPHGFTQAFVPIAIVVNKLLDLIPGINKIEINADTLQKKFGL
FGEPLIMGSVIGVIIGIAAKYDIKGILQLGVTMGAVLILIPKMAALLMEGLLPVSEAA
QEFIEKRFKNRGKIYIGLDSAVGIGHPVTLSVALVLVPLTILIAAILPGNKVLPFADL
AVIPFALVLIVPITKGNVFRTLIIGIIIITSGLLIATNLAPLFTQMALNASFKMPEGA
TMISSICDGANPLSWVFVKVMNYKVIGGVVFGVIALGMAIYNRNRIINENKKLSIEE"
misc_feature 72872..74194
/locus_tag="CDBI1_00230"
/note="Phosphotransferase system, galactitol-specific IIC
component [Carbohydrate transport and metabolism]; Region:
GatC; COG3775"
/db_xref="CDD:33570"
misc_feature 72887..74107
/locus_tag="CDBI1_00230"
/note="PTS system sugar-specific permease component;
Region: EIIC-GAT; cl04451"
/db_xref="CDD:213436"
gene 74253..74726
/locus_tag="CDBI1_00235"
/db_xref="GeneID:12215608"
CDS 74253..74726
/locus_tag="CDBI1_00235"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197216.1"
/db_xref="GI:384359364"
/db_xref="GeneID:12215608"
/translation="MKKYKYDSKRYLLSVTIPGFFMILILIYALFNNYINFNLNIYSL
LIIVCTYGIFNTFISSSNPKKIIIDSKCIHFTSFMTTHKYEIKDIEKIRIREFYNKKI
YLKINDGDLFKGRYWIRTNMFNNSIALYSYFIELEECLYPDSLRFRNKKFENKNI"
gene 74898..75548
/locus_tag="CDBI1_00240"
/db_xref="GeneID:12215609"
CDS 74898..75548
/locus_tag="CDBI1_00240"
/note="COG0235 Ribulose-5-phosphate 4-epimerase and
related epimerases and aldolases"
/codon_start=1
/transl_table=11
/product="sugar-phosphate aldolase"
/protein_id="YP_006197217.1"
/db_xref="GI:384359365"
/db_xref="GeneID:12215609"
/translation="MLLEKLRKEVLQASLDLLNYNLVTLTGGNVSGRDEQTGYIAITP
SGMDYRNLTPSDIVIVDVDGNIIDGKWKASVDLSDHLYIYKHREDINSIIHTHSTYSS
CFAILNEPIECASTTLANEVGGSVPVAKFSPPTFKKMGKCVIEAIGDKRACLLANHGV
IAVGPSVGHALTAAVMLEDSAKVYYLAKSIGTPVLLPDEEIQRARDVFFNVYGQDK"
misc_feature 74904..75539
/locus_tag="CDBI1_00240"
/note="Class II Aldolase and Adducin head (N-terminal)
domain. Aldolases are ubiquitous enzymes catalyzing
central steps of carbohydrate metabolism. Based on
enzymatic mechanisms, this superfamily has been divided
into two distinct classes (Class I and II); Region:
Aldolase_II; cl00214"
/db_xref="CDD:206906"
misc_feature order(74931..74933,74943..74945,74967..74969,75039..75041,
75045..75050,75186..75188,75192..75197,75210..75218,
75237..75239,75243..75248,75288..75290,75366..75368,
75399..75401,75420..75422,75432..75434,75453..75455)
/locus_tag="CDBI1_00240"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29521"
misc_feature order(74982..74984,75030..75035,75117..75125,75180..75182,
75186..75188,75369..75371)
/locus_tag="CDBI1_00240"
/note="active site"
/db_xref="CDD:29521"
misc_feature order(75180..75182,75186..75188,75369..75371)
/locus_tag="CDBI1_00240"
/note="Zn2+ binding site [ion binding]; other site"
/db_xref="CDD:29521"
gene 75722..76654
/locus_tag="CDBI1_00245"
/db_xref="GeneID:12215610"
CDS 75722..76654
/locus_tag="CDBI1_00245"
/note="COG0095 Lipoate-protein ligase A"
/codon_start=1
/transl_table=11
/product="lipoate-protein ligase"
/protein_id="YP_006197218.1"
/db_xref="GI:384359366"
/db_xref="GeneID:12215610"
/translation="MYYLLNKSTNPYFNLALEEYLFLNDKYNDDIIIIWRNEDSIFIG
KNQNPYQEVHHDVIEKGEIPILRRISGGGTVYHDLGNINMSFIQKDRQLHEIDFLEHT
KFMQKMLSTLGLDVSITERKDLFLNGKKISGSAQSIKRKNSLYHGTLLYDSDLNKLTK
YLNSNKATESNATKSVSSKVTNIKFLLEKDINYFLDYCVEYLKSNIKNIKELELDEED
IKSVYNIGEDKYRKIEWTYGKTPKFQVVLPFNNESKINIHVNRWKVSKFFISYDDNVI
NMDKLLDLNFFKEEIKESILENYPHYIDLINLIF"
misc_feature 75722..76438
/locus_tag="CDBI1_00245"
/note="Lipoate-protein ligase A [Coenzyme metabolism];
Region: LplA; COG0095"
/db_xref="CDD:30444"
misc_feature 75848..76183
/locus_tag="CDBI1_00245"
/note="Biotin/lipoate A/B protein ligase family; Region:
BPL_LplA_LipB; pfam03099"
/db_xref="CDD:202534"
gene 76928..77641
/locus_tag="CDBI1_00250"
/db_xref="GeneID:12215611"
CDS 76928..77641
/locus_tag="CDBI1_00250"
/note="COG1211 4-diphosphocytidyl-2-methyl-D-erithritol
synthase"
/codon_start=1
/transl_table=11
/product="2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase"
/protein_id="YP_006197219.1"
/db_xref="GI:384359367"
/db_xref="GeneID:12215611"
/translation="MYSVIIVAAGSGRRMNLDINKQFIKLREKEIIAHTIQVFYENIN
IDEIVVCIKKEEEDFFKENIINKYNFKNIKIAYGGKERQDSIYNGLKKLDENCDIVLI
HDGARPFVDHRIINESIKVAKEKKAVVVGVPVSDTIKIVSDGTVQETPERNLLWAAQT
PQTFEYNLIIDAYEQAYKNNYYGTDDSMLVENIGQSVTMVMGSYENIKITSPEDLNIA
EQILNMEKRDEVNSRRRII"
misc_feature 76931..77581
/locus_tag="CDBI1_00250"
/note="CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production; Region:
CDP-ME_synthetase; cd02516"
/db_xref="CDD:133009"
misc_feature order(76946..76948,76952..76969,76988..76990,77162..77173,
77180..77182,77237..77245,77549..77551)
/locus_tag="CDBI1_00250"
/note="substrate binding site; other site"
/db_xref="CDD:133009"
misc_feature order(77246..77248,77303..77305,77327..77329,77333..77335,
77384..77401,77477..77482,77486..77491,77498..77500,
77513..77524,77534..77539)
/locus_tag="CDBI1_00250"
/note="dimer interface; other site"
/db_xref="CDD:133009"
gene 77638..78123
/locus_tag="CDBI1_00255"
/db_xref="GeneID:12215612"
CDS 77638..78123
/locus_tag="CDBI1_00255"
/note="'COG0245 2C-methyl-D-erythritol
2,4-cyclodiphosphate synthase'"
/codon_start=1
/transl_table=11
/product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase"
/protein_id="YP_006197220.1"
/db_xref="GI:384359368"
/db_xref="GeneID:12215612"
/translation="MRIGLGYDVHKLTENRKLIIGGVEIPHDKGLLGHSDADVLIHAI
MDSILGALALGDIGKHFPDTDEEYKGADSMKLLEHVYNLITSKGYKIGNIDSTIIAQS
PKMAPYIESMRSNISKVLNTDIDNINIKATTEEGLGFTGAKQGIASQSICLLLLTSQN
N"
misc_feature 77641..78099
/locus_tag="CDBI1_00255"
/note="MECDP_synthase
(2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase),
encoded by the ispF gene, catalyzes the formation of
2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the
non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid
biosynthesis; Region: MECDP_synthase; cd00554"
/db_xref="CDD:100025"
misc_feature order(77641..77646,77650..77652,77656..77658,77662..77670,
77680..77682,77785..77787,77791..77796,77800..77805,
77914..77916,77920..77922,77926..77928,77947..77949,
77953..77955,78019..78021,78025..78030,78037..78045,
78082..78084,78088..78090,78094..78096)
/locus_tag="CDBI1_00255"
/note="homotrimer interaction site [polypeptide binding];
other site"
/db_xref="CDD:100025"
misc_feature order(77659..77661,77665..77667,77761..77763)
/locus_tag="CDBI1_00255"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:100025"
misc_feature order(77803..77805,77809..77811,77935..77940,77944..77955,
78028..78036)
/locus_tag="CDBI1_00255"
/note="CDP-binding sites; other site"
/db_xref="CDD:100025"
gene 78490..80205
/locus_tag="CDBI1_00260"
/db_xref="GeneID:12215613"
CDS 78490..80205
/locus_tag="CDBI1_00260"
/EC_number="6.1.1.15"
/note="COG0442 Prolyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="prolyl-tRNA synthetase"
/protein_id="YP_006197221.1"
/db_xref="GI:384359369"
/db_xref="GeneID:12215613"
/translation="MKMSKMFMPTLKEIPADAEITSHQLMVRSGMIKKMTSGVYNQLP
MGLRVFKKIEQIIREELNKKDCQEILCAALLPSELWKESGRWTAMGEEMFRLKDRTER
EYCLGPTHEEAFTDIIRQEITSYKQLPLNLYQIQVKYRDERRPRFGVMRTKTFTMKDA
YSFDVDDKGLDKSYQDMFDAYVSIFDRCGLENSPVQADSGAIGGSTSAEFMVKSEVGE
DEVVFCSGCDYAANVERAESCNLASQKEEMKELEEVHTPGAATIKELEEFLKTSPDKF
AKTLVYEADGKTVVVVVRGDREVNEIKVSNAIGSVIEFALATDDVVRKVTNAEVGFAG
PIGINADYVFIDKEIVEQRNIVVGANKTEYHIKNANYGRDFEGIVGDFRNVQEGDQCI
VCGKPLEIARGVEVGHIFKLGTKYSESMNANFIDKDGKSKPIVMGCYGIGVERTAAAI
IEQHNDEKGIIWPLSVAPYHVVIVPANMKNEEQISIAENIYNDLQAMGVEVLLDDRDE
RIGVKFNDSELIGIPMRITVGKNINEGKVEFKLRHKEDKEIIDIEEINEKVKAEFIRN
NVRLG"
misc_feature 78490..80118
/locus_tag="CDBI1_00260"
/note="prolyl-tRNA synthetase; Provisional; Region:
PRK09194"
/db_xref="CDD:181689"
misc_feature 78538..>79137
/locus_tag="CDBI1_00260"
/note="Prolyl-tRNA synthetase (ProRS) class II core
catalytic domain. ProRS is a homodimer. It is responsible
for the attachment of proline to the 3' OH group of ribose
of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent formation of...; Region:
ProRS_core_prok; cd00779"
/db_xref="CDD:73229"
misc_feature order(78586..78591,78610..78621,78640..78642,78691..78699,
78703..78708,78766..78768,78772..78786,78838..78840,
78898..78900,78949..78951)
/locus_tag="CDBI1_00260"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73229"
misc_feature 78685..78708
/locus_tag="CDBI1_00260"
/note="motif 1; other site"
/db_xref="CDD:73229"
misc_feature order(78814..78816,78820..78822,78907..78909,78913..78915,
78937..78945,78952..78954,78958..78960,78964..78966)
/locus_tag="CDBI1_00260"
/note="active site"
/db_xref="CDD:73229"
misc_feature 78904..78915
/locus_tag="CDBI1_00260"
/note="motif 2; other site"
/db_xref="CDD:73229"
misc_feature 79165..79635
/locus_tag="CDBI1_00260"
/note="INS is an amino acid-editing domain inserted (INS)
into the bacterial class II prolyl-tRNA synthetase (ProRS)
however, this CD is not exclusively bacterial. It is also
found at the N-terminus of the eukaryotic/archaea-like
ProRS's of yeasts and...; Region: ProRS-INS; cd04334"
/db_xref="CDD:88585"
misc_feature order(79321..79323,79480..79485,79561..79563)
/locus_tag="CDBI1_00260"
/note="putative deacylase active site [active]"
/db_xref="CDD:88585"
misc_feature <79561..79848
/locus_tag="CDBI1_00260"
/note="Class II tRNA amino-acyl synthetase-like catalytic
core domain. Class II amino acyl-tRNA synthetases (aaRS)
share a common fold and generally attach an amino acid to
the 3' OH of ribose of the appropriate tRNA. PheRS is an
exception in that it attaches...; Region:
class_II_aaRS-like_core; cl00268"
/db_xref="CDD:206944"
misc_feature order(79696..79701,79711..79713,79801..79806,79810..79815,
79822..79824)
/locus_tag="CDBI1_00260"
/note="active site"
/db_xref="CDD:29813"
misc_feature order(79813..79815,79822..79824)
/locus_tag="CDBI1_00260"
/note="motif 3; other site"
/db_xref="CDD:29813"
misc_feature 79891..80118
/locus_tag="CDBI1_00260"
/note="ProRS Prolyl-anticodon binding domain, short
version found predominantly in bacteria. ProRS belongs to
class II aminoacyl-tRNA synthetases (aaRS). This alignment
contains the anticodon binding domain, which is
responsible for specificity in tRNA-binding; Region:
ProRS_anticodon_short; cd00861"
/db_xref="CDD:29801"
misc_feature order(79915..79920,80032..80034,80050..80052,80074..80076,
80101..80103,80107..80109)
/locus_tag="CDBI1_00260"
/note="anticodon binding site; other site"
/db_xref="CDD:29801"
gene 80327..81772
/locus_tag="CDBI1_00265"
/db_xref="GeneID:12215614"
CDS 80327..81772
/locus_tag="CDBI1_00265"
/EC_number="6.1.1.15"
/note="COG0442 Prolyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="prolyl-tRNA synthetase"
/protein_id="YP_006197222.1"
/db_xref="GI:384359370"
/db_xref="GeneID:12215614"
/translation="MAKNEKQFVEEITKMEDDFPQWYTDVITKTDLVDYAPVKGFMVV
KPYGYALWEKMQEFMDKKFKETGHKNCYFPLLIPESLLNKEAEHVEGFAPEVAWVTHG
GNKKLEERLCVRPTSETIICTMYAKWLKSYRELPYLYNQWCSVVRWEKSTRPFLRTSE
FLWQEGHTLHETAEEAQEETIQQLEVYKALCEELLAMPVVAGQKSESEKFAGGERTYT
IEAMMHDGKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWGASTRLIGGLIM
THSDNRGLVLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKTKGVAVEVDDRDNYT
TGWKFNEWEMKGAPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAICDLFDVI
HNDMFEKARKHREDNTSIVENMDEFRKALEEKPGFIKTMWCGDAECEAKIKEETGATI
RCLPFEQENLGHKCVYCGKEADSMVVMAKAY"
misc_feature 80342..81769
/locus_tag="CDBI1_00265"
/note="prolyl-tRNA synthetase; Provisional; Region:
PRK08661"
/db_xref="CDD:181528"
misc_feature 80378..81157
/locus_tag="CDBI1_00265"
/note="Prolyl-tRNA synthetase (ProRS) class II core
catalytic domain. ProRS is a homodimer. It is responsible
for the attachment of proline to the 3' OH group of ribose
of the appropriate tRNA. This domain is primarily
responsible for ATP-dependent formation of...; Region:
ProRS_core_arch_euk; cd00778"
/db_xref="CDD:29823"
misc_feature order(80426..80431,80453..80464,80483..80485,80534..80542,
80546..80551,80612..80614,80618..80632,80696..80698,
80756..80758,80804..80806)
/locus_tag="CDBI1_00265"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29823"
misc_feature 80528..80551
/locus_tag="CDBI1_00265"
/note="motif 1; other site"
/db_xref="CDD:29823"
misc_feature order(80672..80674,80678..80680,80765..80767,80771..80773,
80792..80800,80807..80809,80813..80815,80819..80821,
81014..81016,81020..81025,81029..81031,81113..81121,
81125..81127,81131..81133)
/locus_tag="CDBI1_00265"
/note="active site"
/db_xref="CDD:29823"
misc_feature 80762..80773
/locus_tag="CDBI1_00265"
/note="motif 2; other site"
/db_xref="CDD:29823"
misc_feature 81119..81133
/locus_tag="CDBI1_00265"
/note="motif 3; other site"
/db_xref="CDD:29823"
misc_feature 81233..81769
/locus_tag="CDBI1_00265"
/note="ProRS Prolyl-anticodon binding domain, long version
found predominantly in eukaryotes and archaea. ProRS
belongs to class II aminoacyl-tRNA synthetases (aaRS).
This alignment contains the anticodon binding domain,
which is responsible for specificity in...; Region:
ProRS_anticodon_zinc; cd00862"
/db_xref="CDD:29802"
misc_feature order(81344..81346,81362..81364,81386..81388,81416..81418,
81422..81424)
/locus_tag="CDBI1_00265"
/note="anticodon binding site; other site"
/db_xref="CDD:29802"
misc_feature order(81623..81625,81638..81640,81716..81718,81725..81727)
/locus_tag="CDBI1_00265"
/note="zinc-binding site [ion binding]; other site"
/db_xref="CDD:29802"
gene 82212..83693
/gene="gltX"
/locus_tag="CDBI1_00270"
/db_xref="GeneID:12215615"
CDS 82212..83693
/gene="gltX"
/locus_tag="CDBI1_00270"
/EC_number="6.1.1.17"
/note="COG0008 Glutamyl- and glutaminyl-tRNA synthetases"
/codon_start=1
/transl_table=11
/product="glutamyl-tRNA synthetase"
/protein_id="YP_006197223.1"
/db_xref="GI:384359371"
/db_xref="GeneID:12215615"
/translation="MNVRVRFAPSPTGFVHIGSLRTALYNYLFAKKMGGEYILRVEDT
DQSRLVEGAIENMLNAMKWAGVNHSEGVILDDSGKVVQKGEYGPYIQSQRLDIYQEYI
KQLLDSGKAYYCFCTKERLDEVRDAQRAAGETAKYDGHCKNLSKEEVEANIKAGIPYV
IRLRLPENHTIKFTDLVRGDMEFNTNDLDDQVLMKTDGFPTYHFAVVVDDYLMKITHV
IRGEEWVSSTPKHVYLYEAFGWEAPVFVHLPNILNKEKKKLSKRQGDVAVEDFKKKGY
LPEGLVNYVALVGWSPEDNQELFTMEELEKAFSVERVSKSGGVFDTEKLNWVNQHYIK
DGDDAYLTDLAIPFLVEDGFITEEEATNKYDFLKSMISVLKEKLQYVKEITEHASIFF
GDKIEVETEEGREFLRLEHIPTLIDALREKIEKTEVLNAEFVQAMLKEIQKEYKIKGK
NLFMGSRIILTGQMHGPDLPKVMEVLGKETCLNRIAYVKNNIL"
misc_feature 82212..83675
/gene="gltX"
/locus_tag="CDBI1_00270"
/note="glutamyl-tRNA synthetase; Reviewed; Region: gltX;
PRK01406"
/db_xref="CDD:179296"
misc_feature 82215..>82559
/gene="gltX"
/locus_tag="CDBI1_00270"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature order(82227..82229,82233..82241,82263..82268,82272..82277,
82335..82337,82548..82550)
/gene="gltX"
/locus_tag="CDBI1_00270"
/note="active site"
/db_xref="CDD:173905"
misc_feature 82257..82268
/gene="gltX"
/locus_tag="CDBI1_00270"
/note="HIGH motif; other site"
/db_xref="CDD:173905"
misc_feature <82779..83213
/gene="gltX"
/locus_tag="CDBI1_00270"
/note="catalytic core domain of discriminating
glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
/db_xref="CDD:173905"
misc_feature order(82815..82817,82827..82829,82869..82874,82878..82883,
82956..82961,82983..82988)
/gene="gltX"
/locus_tag="CDBI1_00270"
/note="active site"
/db_xref="CDD:173905"
misc_feature 82983..82997
/gene="gltX"
/locus_tag="CDBI1_00270"
/note="KMSKS motif; other site"
/db_xref="CDD:173905"
gene 84214..85611
/gene="cysS"
/locus_tag="CDBI1_00275"
/db_xref="GeneID:12215616"
CDS 84214..85611
/gene="cysS"
/locus_tag="CDBI1_00275"
/EC_number="6.1.1.16"
/note="COG0215 Cysteinyl-tRNA synthetase"
/codon_start=1
/transl_table=11
/product="cysteinyl-tRNA synthetase"
/protein_id="YP_006197224.1"
/db_xref="GI:384359372"
/db_xref="GeneID:12215616"
/translation="MKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFI
IFDTLRRYLEYRGYDVTYVQNFTDVDDKIINRSHEEGISPEEVAAKYIKEYFVDCDGL
GIKRATVHPQVTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQED
LEAGARIEVNDQKRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGET
IDIHAGGQDLTFPHHENEIAQSEARSGKIFSKYWMHNGYININDEKMSKSKGNFFTVR
DISKLYDLEIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVES
PLTEKEVELVKELDDFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAK
KCLDEFNELTGVLNIVNKKKDTVLDKDIEELIQKRTDAKKNKEFQLADDIRQQLLDMG
IVLEDTRQGVKWKRI"
misc_feature 84214..85608
/gene="cysS"
/locus_tag="CDBI1_00275"
/note="cysteinyl-tRNA synthetase; Validated; Region: cysS;
PRK00260"
/db_xref="CDD:178951"
misc_feature 84217..>84552
/gene="cysS"
/locus_tag="CDBI1_00275"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature order(84292..84303,84319..84321,84325..84330,84337..84342,
84406..84408,84412..84414)
/gene="cysS"
/locus_tag="CDBI1_00275"
/note="active site"
/db_xref="CDD:173899"
misc_feature 84319..84330
/gene="cysS"
/locus_tag="CDBI1_00275"
/note="HIGH motif; other site"
/db_xref="CDD:173899"
misc_feature <84820..85122
/gene="cysS"
/locus_tag="CDBI1_00275"
/note="catalytic core domain of cysteinyl tRNA synthetase;
Region: CysRS_core; cd00672"
/db_xref="CDD:173899"
misc_feature 85003..85017
/gene="cysS"
/locus_tag="CDBI1_00275"
/note="KMSKS motif; other site"
/db_xref="CDD:173899"
misc_feature 85123..85605
/gene="cysS"
/locus_tag="CDBI1_00275"
/note="Anticodon-binding domain of cysteinyl tRNA
synthetases; Region: Anticodon_Ia_Cys; cd07963"
/db_xref="CDD:153417"
misc_feature order(85129..85131,85138..85140,85150..85152,85159..85161,
85168..85170,85177..85179,85300..85302,85306..85311,
85318..85320,85327..85332,85339..85341,85348..85350,
85492..85494,85504..85506,85519..85521,85531..85533,
85540..85542,85567..85578,85600..85602)
/gene="cysS"
/locus_tag="CDBI1_00275"
/note="tRNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:153417"
misc_feature order(85492..85494,85504..85506,85519..85521,85531..85533,
85540..85542,85570..85578)
/gene="cysS"
/locus_tag="CDBI1_00275"
/note="anticodon binding site; other site"
/db_xref="CDD:153417"
gene 85596..86009
/locus_tag="CDBI1_00280"
/db_xref="GeneID:12215617"
CDS 85596..86009
/locus_tag="CDBI1_00280"
/note="COG1939 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197225.1"
/db_xref="GI:384359373"
/db_xref="GeneID:12215617"
/translation="MEKDIKMEKTELVTMSPLVLAYLGDTVYETYIREYLIRQNTQRK
VNDLHKLAIKYVKAKAQATIIHEIEIELTEEESKIYKRGRNQKSNTSPKNADIIDYKH
ATGFEALVGYLYLNNEIERLQYIINKGIKIIERDM"
misc_feature 85653..86006
/locus_tag="CDBI1_00280"
/note="RIBOc. Ribonuclease III C terminal domain. This
group consists of eukaryotic, bacterial and archeal
ribonuclease III (RNAse III) proteins. RNAse III is a
double stranded RNA-specific endonuclease. Prokaryotic
RNAse III is important in...; Region: RIBOc; cd00593"
/db_xref="CDD:29697"
misc_feature order(85656..85658,85668..85670,85905..85907,85914..85916)
/locus_tag="CDBI1_00280"
/note="active site"
/db_xref="CDD:29697"
misc_feature order(85656..85658,85905..85907,85914..85916)
/locus_tag="CDBI1_00280"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29697"
misc_feature order(85659..85664,85671..85673,85680..85685,85692..85697,
85701..85709,85737..85739,85935..85937,85962..85964)
/locus_tag="CDBI1_00280"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29697"
gene 86116..86226
/gene="thyX"
/locus_tag="CDBI1_00285"
/db_xref="GeneID:12215618"
CDS 86116..86226
/gene="thyX"
/locus_tag="CDBI1_00285"
/EC_number="2.1.1.148"
/codon_start=1
/transl_table=11
/product="FAD-dependent thymidylate synthase"
/protein_id="YP_006197226.1"
/db_xref="GI:384359374"
/db_xref="GeneID:12215618"
/translation="MKVKLISHTPEPEKVIAMAAKLCYSPVGTDEIEKDF"
misc_feature 86116..>86220
/gene="thyX"
/locus_tag="CDBI1_00285"
/note="Thymidylate synthase complementing protein; Region:
Thy1; cl03630"
/db_xref="CDD:207983"
gene 86517..87347
/locus_tag="CDBI1_00290"
/db_xref="GeneID:12215619"
CDS 86517..87347
/locus_tag="CDBI1_00290"
/note="COG0207 Thymidylate synthase"
/codon_start=1
/transl_table=11
/product="thymidylate synthase"
/protein_id="YP_006197227.1"
/db_xref="GI:384359375"
/db_xref="GeneID:12215619"
/translation="MSLADKIFIDMCNNILENGVSSDGEVVRAKWDDGQPAHTIKKFC
VVNRYDLSKEFPILTLRPTNLKAAIDELLWIWQKKSNNINDLNSRIWDSWADETGSIG
KAYGYQIGQKHKYKEGEFDQIDRVIYDLKYNPYSRRIITNIYNHNDLNEMNLYPCAYS
MTFNVTGNRLNAILNQRSNDILVANNWNVTQYAILVHMLAQISDLEVGELVHVIADAH
IYDRHIPLVKELINRESYDAPKLIINPNIKNFYDFRVEDFTLENYKSGPQIKKIPVAI
"
misc_feature 86538..87200
/locus_tag="CDBI1_00290"
/note="Thymidylate synthase and pyrimidine
hydroxymethylase: Thymidylate synthase (TS) and
deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs
that catalyze analogous alkylation of C5 of pyrimidine
nucleotides. Both enzymes are involved in the...; Region:
TS_Pyrimidine_HMase; cd00351"
/db_xref="CDD:58645"
misc_feature order(86574..86576,86613..86615,86637..86639,86643..86645,
86925..86930,86949..86954,86994..86996,87000..87002,
87012..87014,87039..87041,87045..87050,87159..87164)
/locus_tag="CDBI1_00290"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:58645"
misc_feature order(86616..86618,86727..86729,86787..86789,86796..86798,
86829..86831,86985..86990,87042..87050,87054..87056,
87075..87080,87168..87170,87174..87176)
/locus_tag="CDBI1_00290"
/note="active site"
/db_xref="CDD:58645"
gene 87360..87854
/locus_tag="CDBI1_00295"
/db_xref="GeneID:12215620"
CDS 87360..87854
/locus_tag="CDBI1_00295"
/note="COG0262 Dihydrofolate reductase"
/codon_start=1
/transl_table=11
/product="dihydrofolate reductase region"
/protein_id="YP_006197228.1"
/db_xref="GI:384359376"
/db_xref="GeneID:12215620"
/translation="MKVIVAVDLNWGIGYGGKLLQSIPEDMKFFKEKTVGNVVVMGRE
TFKSLPGKKALKDRVNIVLTRSKSFNDDRLIVCNSIDETLKELQKYENDKIFIIGGET
VYKQFLPYCNELYVTKIQKTYEADRFFPNIDIMSNWDLIKESEVKEYNNIRYVFSTYI
NNSL"
misc_feature 87360..87839
/locus_tag="CDBI1_00295"
/note="Dihydrofolate reductase (DHFR). Reduces
7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
as a cofactor. This is an essential step in the
biosynthesis of deoxythymidine phosphate since
5,6,7,8-tetrahydrofolate is required to regenerate 5;
Region: DHFR; cd00209"
/db_xref="CDD:29264"
misc_feature order(87369..87371,87420..87422,87435..87437,87531..87533,
87651..87653,87669..87671,87708..87710)
/locus_tag="CDBI1_00295"
/note="folate binding site [chemical binding]; other site"
/db_xref="CDD:29264"
misc_feature order(87375..87377,87396..87398,87486..87494,87552..87554,
87654..87665)
/locus_tag="CDBI1_00295"
/note="NADP+ binding site [chemical binding]; other site"
/db_xref="CDD:29264"
gene 87881..89257
/locus_tag="CDBI1_00300"
/db_xref="GeneID:12215621"
CDS 87881..89257
/locus_tag="CDBI1_00300"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197229.1"
/db_xref="GI:384359377"
/db_xref="GeneID:12215621"
/translation="MKKDIFVNRVSNALENDRGAVFVGSGISFSSTEVDWFKLLEPLV
NELDITLDNKSDDLPMIAQYIVNNYSGNRGPLVNEISKTFNRKFKLNKYHKYLATTKL
STIWTTNYDMLLEDAFYDFDTSVKVSDDSITRNRLEYDVEIIKMHGCISRSDWNEIVI
TQEDYDDFSINKPAISQRLSEDLINKSFLFIGYSYRDPNIRNIMINARRLSKKHTQQH
YIILKKLKDSDSNITQDDVVRQELWCNDLKRLGISTLFIDEYSELEELLREISQKSRG
KTVYVTGSHKESNMNARKLGTKLAKHKDITLLSGQSSGIGSEVVAAFTEECIKSKEDI
INRMKIFPNPYSADEKYSDDITLIPDLKKCRTKMLNSTQVVVVFSGGIGTEAEIDVAI
KQNCNIIPVITCKEDRENPAIKKILNYSDNMKNIEIKDATYYNKIVDEDGVVTMEEIY
ICISKIMN"
misc_feature 88187..88567
/locus_tag="CDBI1_00300"
/note="SIR2-like domain; Region: SIR2_2; pfam13289"
/db_xref="CDD:205469"
gene 89233..90333
/locus_tag="CDBI1_00305"
/db_xref="GeneID:12215622"
CDS 89233..90333
/locus_tag="CDBI1_00305"
/note="COG0422 Thiamine biosynthesis protein ThiC"
/codon_start=1
/transl_table=11
/product="thiamine biosynthesis protein thic"
/protein_id="YP_006197230.1"
/db_xref="GI:384359378"
/db_xref="GeneID:12215622"
/translation="MHIKNNELKHDIIKLKKRNGFIEVGKDKKTLVNCLIGANELEDY
KYEIKKIDCILNISEKPDIVSDLSTKRRKISESIWYKIVKDTPFVSATLPIYLVSKNN
NKIDSNELLDIIIEQMENGVGMITIHPTANKQIFEDSKNRMVPVTSRGGGMVIQDLIS
KNFSEDNVYLKILPEIIKYAQKHNVCISLGATFRSGNIFDSNDRAQITEIKSQIELAK
RIYKSNVGVIIESPGHSRPSDIIKISSILKKEGFPIMPLGPIPTDIAIGMDHIAAAIG
ATIMGIEGCANIISTVTREEHTGGRPSIESTVESIRTAKIAAHIIDIHQMNDINLDMS
VSKSRAKSNTCIFGKDTRYCDRCRELCPLCIR"
misc_feature 89302..90255
/locus_tag="CDBI1_00305"
/note="ThiC family; Region: ThiC; cl08031"
/db_xref="CDD:208807"
gene 90499..90801
/locus_tag="CDBI1_00310"
/db_xref="GeneID:12215623"
CDS 90499..90801
/locus_tag="CDBI1_00310"
/note="COG1351 Predicted alternative thymidylate synthase"
/codon_start=1
/transl_table=11
/product="thymidylate synthase"
/protein_id="YP_006197231.1"
/db_xref="GI:384359379"
/db_xref="GeneID:12215623"
/translation="MKKYQEDYDKLVEILFENHYNKLIKGGKNEKTSKRQVEKKAIED
ARYVFPNACETKMVFTINARSLFNFFEHRCYENGSCLEGTMTCGDIVQVRKKFKNL"
misc_feature <90499..90720
/locus_tag="CDBI1_00310"
/note="Thymidylate synthase complementing protein; Region:
Thy1; cl03630"
/db_xref="CDD:207983"
gene 90814..91551
/locus_tag="CDBI1_00315"
/db_xref="GeneID:12215624"
CDS 90814..91551
/locus_tag="CDBI1_00315"
/note="COG0566 rRNA methylases"
/codon_start=1
/transl_table=11
/product="tRNA/rRNA methyltransferase"
/protein_id="YP_006197232.1"
/db_xref="GI:384359380"
/db_xref="GeneID:12215624"
/translation="MASIEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDK
NIIIQYVDKHKLDEVSTSHSHQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEI
TDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTI
KRLKEEGLWIAAADMDGETFYKQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIG
NVTSLNASVAGGILLYEIFRQRLDKSK"
misc_feature 90823..91533
/locus_tag="CDBI1_00315"
/note="rRNA methylase, putative, group 3; Region:
rRNA_methyl_3; TIGR00186"
/db_xref="CDD:129290"
misc_feature 90823..91041
/locus_tag="CDBI1_00315"
/note="RNA 2'-O ribose methyltransferase substrate
binding; Region: SpoU_sub_bind; pfam08032"
/db_xref="CDD:203842"
misc_feature 91093..91515
/locus_tag="CDBI1_00315"
/note="SpoU rRNA Methylase family; Region: SpoU_methylase;
pfam00588"
/db_xref="CDD:201328"
gene 91554..92081
/locus_tag="CDBI1_00320"
/db_xref="GeneID:12215625"
CDS 91554..92081
/locus_tag="CDBI1_00320"
/note="COG3688 Predicted RNA-binding protein containing a
PIN domain"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197233.1"
/db_xref="GI:384359381"
/db_xref="GeneID:12215625"
/translation="MKKNINHYLIIDGYNIINAWDNLKELAKEDLEDSREKLIDDIIE
FSEFMGYKTIIVFDAYNVKNSREKVEKRKHITIVYTREHQTADSYIEKFITSLSKYDD
VKVATNDYAEQQMILGKGATRMSARELKLELDRSKNKMKEKNIGLRKKIQRNWLEERL
DKETLSKLENIRRKR"
misc_feature 91578..92072
/locus_tag="CDBI1_00320"
/note="YacP-like NYN domain; Region: NYN_YacP; pfam05991"
/db_xref="CDD:203367"
gene 92146..92793
/locus_tag="CDBI1_00325"
/db_xref="GeneID:12215626"
CDS 92146..92793
/locus_tag="CDBI1_00325"
/EC_number="2.7.7.6"
/note="'COG1595 DNA-directed RNA polymerase specialized
sigma subunit, sigma24 homolog'"
/codon_start=1
/transl_table=11
/product="RNA polymerase factor sigma-70"
/protein_id="YP_006197234.1"
/db_xref="GI:384359382"
/db_xref="GeneID:12215626"
/translation="MLVAKEKSYELVDNCQQDEYNIVLRASEGDKIALEYIITKYRNF
VKAKAKSYFLIGADKEDIIQEGMIGLYKAVRDFDGSKTNSFKCFAEICITRQIITAIK
TATRQKHIPLNSYVSLNKPIYDEESDRTLLDIIATSIVTDPEELIISKEELKNIESKM
NELLSDLELEVLELYLNGKSYQFIADKLKRDVKSIDNALQRVKRKLEKHLENRND"
misc_feature 92209..92790
/locus_tag="CDBI1_00325"
/note="RNA polymerase factor sigma-70; Validated; Region:
PRK08295"
/db_xref="CDD:181361"
misc_feature 92254..92466
/locus_tag="CDBI1_00325"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
gene 92867..94060
/locus_tag="CDBI1_00330"
/db_xref="GeneID:12215627"
CDS 92867..94060
/locus_tag="CDBI1_00330"
/note="COG0050 GTPases - translation elongation factors"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="YP_006197235.1"
/db_xref="GI:384359383"
/db_xref="GeneID:12215627"
/translation="MAKAKYERTKPHVNIGTIGHVDHGKTTLTAAITKTLYDRYQLGE
AVDFANIDKAPEERERGITISTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDG
AILVCSATDGPMPQTREHILLSRQVGVPYIVVFLNKCDMVDDEELLELVEMEVRDLLT
EYDFPGDDTPIVRGSALMALEDPKSEWGDKIVELFEQIDEYIPAPERDTDKPFLMPVE
DVFSITGRGTVATGRVERGVLKVQDEVELVGLTEAPRKVVVTGVEMFRKLLDQAQAGD
NIGALLRGVQRNEIERGQVLAKTGSVKAHTKFTAEVYVLKKEEGGRHTPFFDGYRPQF
YFRTTDVTGACKLPEGIEMVMPGDNVTMEVDLINSIVVEEGLRFSIREGGRTVASGVV
ATIIE"
misc_feature 92867..94057
/locus_tag="CDBI1_00330"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:178823"
misc_feature 92897..93481
/locus_tag="CDBI1_00330"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 92921..92944
/locus_tag="CDBI1_00330"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(92924..92926,92930..92932,92942..92947,92954..92956,
92963..92968,92978..92980,93065..93070,93122..93127,
93194..93199,93203..93214,93221..93223,93314..93316,
93326..93328,93404..93409)
/locus_tag="CDBI1_00330"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(92930..92947,93008..93010,93275..93280,93284..93286,
93389..93397)
/locus_tag="CDBI1_00330"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 93035..93067
/locus_tag="CDBI1_00330"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 93053..93055
/locus_tag="CDBI1_00330"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 93110..93121
/locus_tag="CDBI1_00330"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 93116..93172
/locus_tag="CDBI1_00330"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 93275..93286
/locus_tag="CDBI1_00330"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 93389..93397
/locus_tag="CDBI1_00330"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 93503..93766
/locus_tag="CDBI1_00330"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature 93773..94042
/locus_tag="CDBI1_00330"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature order(93809..93811,93815..93823,93875..93877,93995..94003,
94031..94033)
/locus_tag="CDBI1_00330"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene 94310..94459
/gene="rpmG"
/locus_tag="CDBI1_00335"
/db_xref="GeneID:12215628"
CDS 94310..94459
/gene="rpmG"
/locus_tag="CDBI1_00335"
/note="COG0267 Ribosomal protein L33"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L33"
/protein_id="YP_006197236.1"
/db_xref="GI:384359384"
/db_xref="GeneID:12215628"
/translation="MRVKVTLACTECKQRNYNTTKNKKNNPDRIELQKYCRFCKKHTT
HKETK"
misc_feature 94310..94456
/gene="rpmG"
/locus_tag="CDBI1_00335"
/note="50S ribosomal protein L33; Validated; Region: rpmG;
PRK00504"
/db_xref="CDD:179049"
gene 94485..94706
/locus_tag="CDBI1_00340"
/db_xref="GeneID:12215629"
CDS 94485..94706
/locus_tag="CDBI1_00340"
/note="COG0690 Preprotein translocase subunit SecE"
/codon_start=1
/transl_table=11
/product="preprotein translocase SecE subunit"
/protein_id="YP_006197237.1"
/db_xref="GI:384359385"
/db_xref="GeneID:12215629"
/translation="MAAQKNDGAKTKKRFSLFGYLKETKQELKRVTWPTKKELFKNTS
IVLTVVISCTILVWGIDTILSGALALLLK"
misc_feature 94530..94697
/locus_tag="CDBI1_00340"
/note="SecE/Sec61-gamma subunits of protein translocation
complex; Region: SecE; pfam00584"
/db_xref="CDD:201325"
gene 94726..95268
/locus_tag="CDBI1_00345"
/db_xref="GeneID:12215630"
CDS 94726..95268
/locus_tag="CDBI1_00345"
/note="COG0250 Transcription antiterminator"
/codon_start=1
/transl_table=11
/product="transcription antitermination protein"
/protein_id="YP_006197238.1"
/db_xref="GI:384359386"
/db_xref="GeneID:12215630"
/translation="MSELQEASWYVVHTYSGHENKVKATIEKAVKTRGMEDCIRQVVV
PTEEVVETTKTGKEKTRQRKVYPSYVLVKMIITDESWYVVRNTKGVTGFVGPGSKPVP
LSEDEVKAMGIDTTDPKVVNSDVDFEIGDTVKVSQGPFSGQIGNIEEIDLENREVKVC
INAFGKRTLFVIELEGIEKI"
misc_feature 94729..95265
/locus_tag="CDBI1_00345"
/note="transcription antitermination protein NusG;
Validated; Region: nusG; PRK05609"
/db_xref="CDD:180161"
misc_feature 94750..95058
/locus_tag="CDBI1_00345"
/note="Bacterial N-Utilization Substance G (NusG)
N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
cd09891"
/db_xref="CDD:193580"
misc_feature order(94756..94758,94858..94860,94921..94923,94930..94932,
94936..94938,95032..95034,95056..95058)
/locus_tag="CDBI1_00345"
/note="putative homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:193580"
misc_feature 95101..95178
/locus_tag="CDBI1_00345"
/note="KOW (Kyprides, Ouzounis, Woese) motif; Region: KOW;
smart00739"
/db_xref="CDD:128978"
gene 95304..95729
/gene="rplK"
/locus_tag="CDBI1_00350"
/db_xref="GeneID:12215631"
CDS 95304..95729
/gene="rplK"
/locus_tag="CDBI1_00350"
/note="COG0080 Ribosomal protein L11"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L11"
/protein_id="YP_006197239.1"
/db_xref="GI:384359387"
/db_xref="GeneID:12215631"
/translation="MAKKVIGQIKLQIPAGKATPAPPVGPALGQHGVNIMGFTKEFNA
KTADQAGMIIPVVITVYQDRSFSFITKTPPAAVLIKKALNLKSGSGEPNKKKVAKMTS
AQVREIAELKMPDLNAASVEAAMSMIAGTARSMGVVIED"
misc_feature 95304..95726
/gene="rplK"
/locus_tag="CDBI1_00350"
/note="50S ribosomal protein L11; Validated; Region: rplK;
PRK00140"
/db_xref="CDD:178895"
misc_feature 95328..95720
/gene="rplK"
/locus_tag="CDBI1_00350"
/note="Ribosomal protein L11. Ribosomal protein L11,
together with proteins L10 and L7/L12, and 23S rRNA, form
the L7/L12 stalk on the surface of the large subunit of
the ribosome. The homologous eukaryotic cytoplasmic
protein is also called 60S ribosomal...; Region:
Ribosomal_L11; cd00349"
/db_xref="CDD:100101"
misc_feature order(95331..95333,95391..95393,95523..95531,95541..95543,
95562..95564,95637..95639,95652..95660,95670..95672,
95679..95684,95691..95696,95700..95708)
/gene="rplK"
/locus_tag="CDBI1_00350"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:100101"
misc_feature order(95331..95333,95472..95474,95478..95489,95499..95501,
95505..95510,95640..95645,95652..95657)
/gene="rplK"
/locus_tag="CDBI1_00350"
/note="L7/L12 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
misc_feature order(95379..95381,95391..95393)
/gene="rplK"
/locus_tag="CDBI1_00350"
/note="putative thiostrepton binding site; other site"
/db_xref="CDD:100101"
misc_feature order(95580..95582,95589..95591)
/gene="rplK"
/locus_tag="CDBI1_00350"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:100101"
gene 95799..96497
/gene="rplA"
/locus_tag="CDBI1_00355"
/db_xref="GeneID:12215632"
CDS 95799..96497
/gene="rplA"
/locus_tag="CDBI1_00355"
/note="COG0081 Ribosomal protein L1"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L1"
/protein_id="YP_006197240.1"
/db_xref="GI:384359388"
/db_xref="GeneID:12215632"
/translation="MAKKGKRYAGALQKVDRTKFYDASEALTLVSDIAGAKFDETVEA
HIKLGVDSRHADQQVRGAVVLPHGTGKTKRVLVFAKGEKAKEAEQAGADFVGAEELVQ
KIQGENWFDFDIVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIDEIKAG
KVEYRLDKTNIIHVPVGKVSFGGEKLTENFTALMDAIIKAKPAAAKGQYLRSITVASS
MGPGVKINPARTAE"
misc_feature 95871..96473
/gene="rplA"
/locus_tag="CDBI1_00355"
/note="Ribosomal protein L1. The L1 protein, located near
the E-site of the ribosome, forms part of the L1 stalk
along with 23S rRNA. In bacteria and archaea, L1
functions both as a ribosomal protein that binds rRNA, and
as a translation repressor that binds...; Region:
Ribosomal_L1; cd00403"
/db_xref="CDD:88601"
misc_feature order(95904..95912,95919..95921,95925..95927,95931..95933,
95937..95939,96303..96305,96309..96311,96315..96317,
96453..96458,96462..96464)
/gene="rplA"
/locus_tag="CDBI1_00355"
/note="mRNA/rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88601"
gene 96720..97226
/gene="rplJ"
/locus_tag="CDBI1_00360"
/db_xref="GeneID:12215633"
CDS 96720..97226
/gene="rplJ"
/locus_tag="CDBI1_00360"
/note="COG0244 Ribosomal protein L10"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L10"
/protein_id="YP_006197241.1"
/db_xref="GI:384359389"
/db_xref="GeneID:12215633"
/translation="MRKAIEIKSEVVSEIVEKLQKSSAAVVVDYKGLTVEEVTELRKQ
MREAGVDYKVYKNTLVRRAAKEVGIEQFNDELLVGTNAIAFGYDDPVAPARILKGFMD
SHPKMKLKMGIVEGAFYDESKIVEMANIPSREVLIAKLLGSLKAPVSNFAYLIDAIAK
KAEGQEEA"
misc_feature 96774..97202
/gene="rplJ"
/locus_tag="CDBI1_00360"
/note="Ribosomal protein L10 family, L10 subfamily;
composed of bacterial 50S ribosomal protein and eukaryotic
mitochondrial 39S ribosomal protein, L10. L10 occupies the
L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
of L10 interacts with L11 protein...; Region:
Ribosomal_L10; cd05797"
/db_xref="CDD:88597"
misc_feature order(96885..96896,96903..96905)
/gene="rplJ"
/locus_tag="CDBI1_00360"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88597"
misc_feature order(96990..96992,97059..97061,97068..97070,97116..97118,
97125..97130,97137..97142,97146..97163,97167..97175,
97182..97187,97191..97196,97200..97202)
/gene="rplJ"
/locus_tag="CDBI1_00360"
/note="Interface with L7/L12 ribosomal proteins
[polypeptide binding]; other site"
/db_xref="CDD:88597"
gene 97284..97649
/locus_tag="CDBI1_00365"
/db_xref="GeneID:12215634"
CDS 97284..97649
/locus_tag="CDBI1_00365"
/note="COG0222 Ribosomal protein L7/L12"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L7/L12"
/protein_id="YP_006197242.1"
/db_xref="GI:384359390"
/db_xref="GeneID:12215634"
/translation="MTIEQILEAIENMKVLELNELVKAAEEKFGVSASAPVMVAGAAA
GGPAAEEKTEFDVVLTDVGSSKVGVIKAVREITGLGLKEAKEVVDNAPKTVKEGASKE
EADQIKEKLEAAGAKVEVK"
misc_feature 97284..97643
/locus_tag="CDBI1_00365"
/note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
refers to the large ribosomal subunit proteins L7 and L12,
which are identical except that L7 is acetylated at the N
terminus. It is a component of the L7/L12 stalk, which is
located at the surface of...; Region: Ribosomal_L7_L12;
cd00387"
/db_xref="CDD:100102"
misc_feature order(97284..97286,97323..97331,97338..97343,97350..97352,
97359..97361,97404..97406,97413..97418,97422..97430,
97440..97445,97506..97508,97512..97517,97521..97523,
97527..97532,97572..97577,97581..97583,97590..97592)
/locus_tag="CDBI1_00365"
/note="core dimer interface [polypeptide binding]; other
site"
/db_xref="CDD:100102"
misc_feature order(97293..97295,97302..97304,97314..97316,97353..97355,
97368..97370)
/locus_tag="CDBI1_00365"
/note="peripheral dimer interface [polypeptide binding];
other site"
/db_xref="CDD:100102"
misc_feature order(97335..97337,97344..97349,97359..97361,97368..97370)
/locus_tag="CDBI1_00365"
/note="L10 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(97479..97484,97491..97496,97503..97505,97524..97529,
97536..97538)
/locus_tag="CDBI1_00365"
/note="L11 interface [polypeptide binding]; other site"
/db_xref="CDD:100102"
misc_feature order(97482..97484,97494..97496,97503..97505,97524..97529,
97536..97538)
/locus_tag="CDBI1_00365"
/note="putative EF-Tu interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
misc_feature order(97482..97484,97491..97496,97503..97505)
/locus_tag="CDBI1_00365"
/note="putative EF-G interaction site [polypeptide
binding]; other site"
/db_xref="CDD:100102"
gene 98041..98829
/locus_tag="CDBI1_00370"
/db_xref="GeneID:12215635"
CDS 98041..98829
/locus_tag="CDBI1_00370"
/note="COG1028 Dehydrogenases with different specificities
(related to short-chain alcohol dehydrogenases)"
/codon_start=1
/transl_table=11
/product="NADP-dependent 7-alpha-hydroxysteroid
dehydrogenase"
/protein_id="YP_006197243.1"
/db_xref="GI:384359391"
/db_xref="GeneID:12215635"
/translation="MEKLQGKIAVVTAATKGIGLASAEILAKNGATVYLAARSEELAN
EVINKISAEGGCAKFVYFNAREEETFTSMIEEVVKKEGKIDILVNNFGSTNPSLDKDL
VTGDTDNFFDTVNTNLKSVYLPCKAAIPHMIKNGKGSIVNISSIGSVLPDLSRIAYCV
SKAAINSLTQNIATQYAKDNVRCNAVLPGLIATKAALDNMSPEFIKEFLKHVPLNRIG
EPDDIAKAVLFYASDDSSFITGDLLEVAGGFGLPTPQFADNILG"
misc_feature 98047..98793
/locus_tag="CDBI1_00370"
/note="3-ketoacyl-(acyl-carrier-protein) reductase;
Validated; Region: fabG; PRK05653"
/db_xref="CDD:180183"
misc_feature 98065..98775
/locus_tag="CDBI1_00370"
/note="classical (c) SDRs; Region: SDR_c; cd05233"
/db_xref="CDD:212491"
misc_feature order(98077..98079,98083..98094,98149..98157,98224..98232,
98308..98316,98386..98388,98467..98475,98512..98514,
98524..98526,98602..98613,98617..98622)
/locus_tag="CDBI1_00370"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:212491"
misc_feature order(98389..98391,98473..98475,98512..98514,98524..98526)
/locus_tag="CDBI1_00370"
/note="active site"
/db_xref="CDD:212491"
gene 99300..103016
/gene="rpoB"
/locus_tag="CDBI1_00375"
/db_xref="GeneID:12215636"
CDS 99300..103016
/gene="rpoB"
/locus_tag="CDBI1_00375"
/EC_number="2.7.7.6"
/note="'COG0085 DNA-directed RNA polymerase, beta
subunit/140 kD subunit'"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta"
/protein_id="YP_006197244.1"
/db_xref="GI:384359392"
/db_xref="GeneID:12215636"
/translation="MPHPVTIGKRTRMSFSKIKEIADVPNLIEIQVDSYEWFLKEGLK
EVFDDISPIEDYTGNLILEFVDYSLDDKPKYDIEECKERDATYCAPLKVKVRLINKET
GEIKEQEVFMGDFPLMTERGTFVINGAERVIVSQLVRSPGVYYAEERDKTGKRLISST
VIPNRGAWLEYETDSNDVISVRVDRTRKQPVTVLLRALGIGTDAEIIDLLGEDERLSA
TLEKDNTKTVEEGLVEIYKKLRPGEPPTVESASSLLNALFFDPKRYDLAKVGRYKFNK
KLALCYRIMNKISAEDIINPETGEVFVKAGEKISYDLAKAIQNAGINVVNLLMDDDKK
VRVIGNNFVDIKSHIDFDIDDLNIKEKVHYPTLKEILDGYSDEEEIKEAIKSRIKELI
PKHILLDDIIASISYEFNIFYNIGNIDDIDHLGNRRIRSVGELLQNQVRIGLSRMERV
IKERMTVQDMEAITPQALVNIRPVSAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSA
LGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLGTYAKINEFGFIESP
YRKFDKETSTVTDEIHYLTADEEDLFVRAQANEPLTEDGKFVNHRVVCRTVNGAVEMV
PESRVDYMDISPKQVVSVATAMIPFLENDDANRALMGANMQRQAVPLVRREAPIIGTG
IEYRAAKDSGAVVVARNSGIAERVTADEIIIKREDGNRDRYNLLKFKRSNSGTCINQT
PIINKGDQIIKGDVIADGPATDLGEVALGRNCLIAFMTWEGYNYEDAILINERLVKED
RLSTIHIEEYECEARDTKLGPEEITRDIPNVGDSAIKNLDDRGIIRIGAEVDSGDILV
GKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTRENGDDL
SPGVNELVRCYIAKKRKIKVGDKMAGRHGNKGVISRVLPEEDMPFMENGTPLDIILNP
QGIPSRMNIGQVLEVHLGLAAKTLGWYVATSVFDGANEYDIMDALEEAGYPRDGKLTL
YDGRTGQSFDNRITVGYMYYLKLHHLVDEKLHARSTGPYSLVTQQPLGGKAQFGGQRF
GEMEVWALEAYGAAHILQEILTVKSDDVVGRVRTYEAIVKGENIPEPGIPESFKVLIK
ELQSLCLDVKVLTDEDQEIEVRESVDEDDTIGEFELDVVNHMGEVEESNIIEEIEDDF
VEATEDEDIENLEEFTEDDLFEEEIDFESDDFDM"
misc_feature 99378..>99866
/gene="rpoB"
/locus_tag="CDBI1_00375"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cl04593"
/db_xref="CDD:156170"
misc_feature 99714..>100139
/gene="rpoB"
/locus_tag="CDBI1_00375"
/note="RNA polymerase Rpb2, domain 2; Region:
RNA_pol_Rpb2_2; pfam04561"
/db_xref="CDD:203048"
misc_feature <100437..>101369
/gene="rpoB"
/locus_tag="CDBI1_00375"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature <100467..102791
/gene="rpoB"
/locus_tag="CDBI1_00375"
/note="DNA-directed RNA polymerase subunit beta; Reviewed;
Region: rpoB; PRK00405"
/db_xref="CDD:179007"
misc_feature <101103..102770
/gene="rpoB"
/locus_tag="CDBI1_00375"
/note="RNA polymerase beta subunit. RNA polymerases
catalyse the DNA dependent polymerization of RNA.
Prokaryotes contain a single RNA polymerase compared to
three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). Each RNA polymerase...; Region:
RNA_pol_B_RPB2; cd00653"
/db_xref="CDD:73223"
misc_feature order(101196..101198,101250..101258,101262..101264,
101625..101636,101643..101645,101649..101657,
102132..102134,102138..102140,102144..102146,
102210..102212,102216..102218,102225..102227,
102234..102236,102249..102251,102261..102263,
102312..102314,102393..102395,102417..102425,
102429..102431,102468..102470,102477..102485,
102489..102494,102555..102563,102573..102575,
102579..102584,102588..102590,102594..102611,
102615..102632,102642..102644,102711..102713,
102723..102725,102729..102731,102735..102740,
102744..102746,102750..102761,102765..102767)
/gene="rpoB"
/locus_tag="CDBI1_00375"
/note="RPB1 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(101514..101519,101610..101612,101616..101618,
101679..101681,101688..101690,102159..102161,
102198..102200,102279..102284,102288..102290,
102381..102383,102432..102434)
/gene="rpoB"
/locus_tag="CDBI1_00375"
/note="RPB10 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(101643..101645,101685..101687,102156..102158,
102399..102401)
/gene="rpoB"
/locus_tag="CDBI1_00375"
/note="RPB11 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(101685..101690,101700..101702,102078..102080,
102084..102086,102159..102167,102174..102176,
102180..102185,102396..102419,102423..102425)
/gene="rpoB"
/locus_tag="CDBI1_00375"
/note="RPB3 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
misc_feature order(101700..101702,101811..101813,101817..101819,
101829..101837,101841..101843)
/gene="rpoB"
/locus_tag="CDBI1_00375"
/note="RPB12 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:73223"
gene 103058..106543
/locus_tag="CDBI1_00380"
/db_xref="GeneID:12215637"
CDS 103058..106543
/locus_tag="CDBI1_00380"
/EC_number="2.7.7.6"
/note="'COG0086 DNA-directed RNA polymerase, beta'
subunit/160 kD subunit'"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit beta'"
/protein_id="YP_006197245.1"
/db_xref="GI:384359393"
/db_xref="GeneID:12215637"
/translation="MFELNNFESIKIALASPEKIRQWSRGEVKKPETINYRTLKPEKD
GLFCERIFGPQKDWECHCGKYRRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPMS
HIWYFKGIPSRMGLLLDMSPRSLEKILYFASYVVVDPGETGLNEKQLLTEKEYRTALE
KYGYTFTVGMGAEAVKTLLQNIDLEQQSKDLRAELKDSTGQKKVRTIRRLEVVEAFKK
SGNKPEWMILDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGA
PDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPELKFYQCGLPKKMALELFKPFVMDKLVKEGYAHNIKSAKSIVEK
VKPEVWDVLEDVIKSHPVLLNRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAYNADF
DGDQMAVHVPLSVEAQAEARFLMLSVNNILAPKDGSPITTPSQDMVLGCYYLTIEAQD
GAKGTGMVFKDFNELLLAYYNKSVHLHALVKLKVTLEDGRSSLVESTVGRFIFNENIP
QDLGFVDRKENPFALEVDFLADKKSLGKIIDKCFRKHGNTETAELLDYIKALGFKYST
LGGITVAVDDMSVPEEKKVFIAEAEAKVDKYEKAYRRGLISDEERYEKVIETWTETTD
KVTDALMGGLDRLNNIYIMAHSGARGSKNQIRQLAGMRGLMANASGKTVEIPVKSNFR
EGLSVLEYFTSSHGARKGLADTAIRTAESGYLTRRLVDVSQDVIVREIDCGTEDTTEI
YAIKEGNEVIEEIYDRIVGRYTIDPILNPETGEVLVEADSMIQEDEAETIVALGIEKI
RIRTVLNCKTNHGVCSKCYGRNLATGKEVNIGEAVGIIAAQSIGEPGTQLTMRTFHTG
GVAGADITQGLPRVEELFEARKPKGLAVITEVSGRVEIDETGKRKEVNVIPEEGETQT
YVIPYGSRLKVKQGQMLEAGDPLTQGFINPHDIVRVNGVKGVQEYIVKEVQRVYRLQG
VDVNDKHIEVIVRQMLSKVKVEDPGDTDLLPGGYEDVLTFNECNKDAIDKGLRPAVAK
RVLLGITKASLATDSFLSAASFQETTRVLTEAAIKGKEDHLIGLKENVILGKLIPAGT
GMKKYRNIAVEKIED"
misc_feature 103058..106540
/locus_tag="CDBI1_00380"
/note="DNA-directed RNA polymerase subunit beta';
Provisional; Region: PRK00566"
/db_xref="CDD:179068"
misc_feature 103067..104050
/locus_tag="CDBI1_00380"
/note="RNA polymerase Rpb1, domain 1; Region:
RNA_pol_Rpb1_1; pfam04997"
/db_xref="CDD:147265"
misc_feature 103727..104557
/locus_tag="CDBI1_00380"
/note="RNA polymerase I subunit A N-terminus; Region:
RPOLA_N; smart00663"
/db_xref="CDD:197824"
misc_feature 104489..104962
/locus_tag="CDBI1_00380"
/note="RNA polymerase Rpb1, domain 3; Region:
RNA_pol_Rpb1_3; pfam04983"
/db_xref="CDD:147253"
misc_feature 105047..105277
/locus_tag="CDBI1_00380"
/note="RNA polymerase Rpb1, domain 4; Region:
RNA_pol_Rpb1_4; pfam05000"
/db_xref="CDD:203147"
misc_feature 105704..>105868
/locus_tag="CDBI1_00380"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(105704..105706,105713..105718,105722..105724)
/locus_tag="CDBI1_00380"
/note="Rpb1 (beta') - Rpb6 (omega) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
misc_feature 105779..105805
/locus_tag="CDBI1_00380"
/note="G-loop; other site"
/db_xref="CDD:132721"
misc_feature 105893..>106063
/locus_tag="CDBI1_00380"
/note="Apocytochrome F, C-terminal; Region:
Apocytochr_F_C; cl03168"
/db_xref="CDD:213110"
misc_feature 106028..106501
/locus_tag="CDBI1_00380"
/note="Largest subunit (beta') of Bacterial DNA-dependent
RNA polymerase (RNAP), C-terminal domain; Region:
RNAP_beta'_C; cd02655"
/db_xref="CDD:132721"
misc_feature order(106343..106345,106388..106393)
/locus_tag="CDBI1_00380"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:132721"
misc_feature order(106433..106435,106451..106453,106469..106471,
106478..106483,106493..106495)
/locus_tag="CDBI1_00380"
/note="Rpb1 (beta') - Rpb2 (beta) interaction site
[polypeptide binding]; other site"
/db_xref="CDD:132721"
gene 106832..107254
/gene="rpsL"
/locus_tag="CDBI1_00385"
/db_xref="GeneID:12215638"
CDS 106832..107254
/gene="rpsL"
/locus_tag="CDBI1_00385"
/note="COG0048 Ribosomal protein S12"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S12"
/protein_id="YP_006197246.1"
/db_xref="GI:384359394"
/db_xref="GeneID:12215638"
/translation="MPTINQLVRKSRKALEKKSTAPALQKGYNSLNKKVTDASAPQKR
GVCTSVKTVTPKKPNSALRKVARVRLTNGIEVSAYIPGEGHNLQEHSVVLIRGGRVKD
LPGVRYHILRGTLDTAGVDKRRQSRSKYGAKRPKEAKK"
misc_feature 106838..107200
/gene="rpsL"
/locus_tag="CDBI1_00385"
/note="S12-like family, 30S ribosomal protein S12
subfamily; S12 is located at the interface of the large
and small ribosomal subunits of prokaryotes, chloroplasts
and mitochondria, where it plays an important role in both
tRNA and ribosomal subunit...; Region: Ribosomal_S12;
cd03368"
/db_xref="CDD:48341"
misc_feature order(106841..106846,106850..106855,106862..106867)
/gene="rpsL"
/locus_tag="CDBI1_00385"
/note="S17 interaction site [polypeptide binding]; other
site"
/db_xref="CDD:48341"
misc_feature 106841..106843
/gene="rpsL"
/locus_tag="CDBI1_00385"
/note="S8 interaction site; other site"
/db_xref="CDD:48341"
misc_feature order(106865..106873,106907..106909,106952..106957,
106961..106963,107006..107011,107015..107023,
107042..107044,107066..107068,107075..107080,
107117..107122,107132..107137,107198..107200)
/gene="rpsL"
/locus_tag="CDBI1_00385"
/note="16S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(106997..107002,107132..107134)
/gene="rpsL"
/locus_tag="CDBI1_00385"
/note="streptomycin interaction site [chemical binding];
other site"
/db_xref="CDD:48341"
misc_feature 107000..107005
/gene="rpsL"
/locus_tag="CDBI1_00385"
/note="23S rRNA interaction site [nucleotide binding];
other site"
/db_xref="CDD:48341"
misc_feature order(107003..107020,107078..107104)
/gene="rpsL"
/locus_tag="CDBI1_00385"
/note="aminoacyl-tRNA interaction site (A-site)
[nucleotide binding]; other site"
/db_xref="CDD:48341"
gene 107377..107847
/locus_tag="CDBI1_00390"
/db_xref="GeneID:12215639"
CDS 107377..107847
/locus_tag="CDBI1_00390"
/note="COG0049 Ribosomal protein S7"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S7"
/protein_id="YP_006197247.1"
/db_xref="GI:384359395"
/db_xref="GeneID:12215639"
/translation="MPRKGNIPKREVLPDPMYGSKVVTKLINNLMVDGKKGKSQRIVY
DAFAIVAEKTGEEALEVFNKAMDNIMPVLEVKARRVGGANYQVPIEVRPERRQTLGLR
WLVKYTRARGEKGMVEKLAKEIMDAANNTGASVKKKEDTHKMAEANKAFAHYRW"
misc_feature 107377..107844
/locus_tag="CDBI1_00390"
/note="30S ribosomal protein S7; Validated; Region:
PRK05302"
/db_xref="CDD:180003"
gene 107896..109962
/locus_tag="CDBI1_00395"
/db_xref="GeneID:12215640"
CDS 107896..109962
/locus_tag="CDBI1_00395"
/note="COG0480 Translation elongation factors (GTPases)"
/codon_start=1
/transl_table=11
/product="elongation factor G"
/protein_id="YP_006197248.1"
/db_xref="GI:384359396"
/db_xref="GeneID:12215640"
/translation="MARKFPLEKTRNIGIMAHIDAGKTTTTERILFYTGQTHKIGETH
EGASQMDWMEQEKERGITITSAATTASWKDHRINIIDTPGHVDFTVEVERSLRVLDGS
VAVFCAKGGVEPQSENVWRQAETYGVPRIAFINKMDILGADFYNVISMMKSRLNSNAV
PMQLPIGKEDSFIGIIDLLKMDAVIYKDDLGVEMEETDIPEDMKELAAEWREKLVESV
AETDEELMMKYLEGEELTIDELKVAIRKATIACEMNPVFCGTAYRNKGVQLVIDAVLD
YLPAPTDIPAIKGILADGEEAERHSSDEEPFSALAFKIMTDPFVGKLAFFRVYSGTLE
SGSYVLNATKNKRERIGRILQMHANTREEITKVYAGDIAAAVGLKDTTTGDTLCDPAN
PIILESMEFPEPVISVAIEPSSKAAQEKMGIALQKLAEEDPTFTVKTDQETGQTIISG
MGELHLEIIVDRLLREFKVEAKVGAPQVAYRETITQPVDVEYKYSKQSGGRGQYGHVK
IRVAPQEPGEGYKFTNKTVGGSVPKEYVGPVDMGIQGAMQSGIVAGYPVVDVAVELYD
GSYHEVDSSEMAFKMAGSMAFKDAMKKGNAVLLEPYFKVEVVTPEDYMGDVMGDLNSR
RGLIQGMEARSGAQVINAFVPLSEMFGYSTDLRSSTQGRATYTMIFDHYEQVPASVAK
KIAEGK"
misc_feature 107896..109953
/locus_tag="CDBI1_00395"
/note="elongation factor G; Reviewed; Region: PRK00007"
/db_xref="CDD:178789"
misc_feature 107929..108738
/locus_tag="CDBI1_00395"
/note="Elongation factor G (EF-G) family involved in both
the elongation and ribosome recycling phases of protein
synthesis; Region: EF-G; cd01886"
/db_xref="CDD:206673"
misc_feature 107944..107967
/locus_tag="CDBI1_00395"
/note="G1 box; other site"
/db_xref="CDD:206673"
misc_feature order(107947..107949,107953..107955,107965..107970,
107977..107979,107986..107991,108091..108096,
108148..108153,108220..108225,108331..108333,
108343..108345)
/locus_tag="CDBI1_00395"
/note="putative GEF interaction site [polypeptide
binding]; other site"
/db_xref="CDD:206673"
misc_feature order(107953..107955,107959..107970,108298..108303,
108307..108309,108673..108681)
/locus_tag="CDBI1_00395"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206673"
misc_feature 108034..108093
/locus_tag="CDBI1_00395"
/note="Switch I region; other site"
/db_xref="CDD:206673"
misc_feature 108079..108081
/locus_tag="CDBI1_00395"
/note="G2 box; other site"
/db_xref="CDD:206673"
misc_feature 108136..108147
/locus_tag="CDBI1_00395"
/note="G3 box; other site"
/db_xref="CDD:206673"
misc_feature 108142..108198
/locus_tag="CDBI1_00395"
/note="Switch II region; other site"
/db_xref="CDD:206673"
misc_feature 108298..108309
/locus_tag="CDBI1_00395"
/note="G4 box; other site"
/db_xref="CDD:206673"
misc_feature 108673..108681
/locus_tag="CDBI1_00395"
/note="G5 box; other site"
/db_xref="CDD:206673"
misc_feature 108814..109062
/locus_tag="CDBI1_00395"
/note="EFG_mtEFG_II: this subfamily represents the domain
II of elongation factor G (EF-G) in bacteria and, the
C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
and G2 (mtEFG2)_like proteins found in eukaryotes. During
the process of peptide synthesis...; Region: EFG_mtEFG_II;
cd04088"
/db_xref="CDD:58095"
misc_feature 109333..109680
/locus_tag="CDBI1_00395"
/note="EFG_mtEFG1_IV: domains similar to domain IV of the
bacterial translational elongation factor (EF) EF-G.
Included in this group is a domain of mitochondrial
Elongation factor G1 (mtEFG1) proteins homologous to
domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG1_IV; cd01434"
/db_xref="CDD:58274"
misc_feature 109693..109926
/locus_tag="CDBI1_00395"
/note="EFG_mtEFG_C: domains similar to the C-terminal
domain of the bacterial translational elongation factor
(EF) EF-G. Included in this group is the C-terminus of
mitochondrial Elongation factor G1 (mtEFG1) and G2
(mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
EFG_mtEFG_C; cd03713"
/db_xref="CDD:58065"
gene 110053..111246
/locus_tag="CDBI1_00400"
/db_xref="GeneID:12215641"
CDS 110053..111246
/locus_tag="CDBI1_00400"
/note="COG0050 GTPases - translation elongation factors"
/codon_start=1
/transl_table=11
/product="elongation factor Tu"
/protein_id="YP_006197249.1"
/db_xref="GI:384359397"
/db_xref="GeneID:12215641"
/translation="MAKAKYERTKPHVNIGTIGHVDHGKTTLTAAITKTLYDRYQLGE
AVDFANIDKAPEERERGITISTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDG
AILVCSATDGPMPQTREHILLSRQVGVPYIVVFLNKCDMVDDEELLELVEMEVRDLLT
EYDFPGDDTPIVRGSALMALEDPKSEWGDKIVELFEQIDEYIPAPERDTDKPFLMPVE
DVFSITGRGTVATGRVERGVLKVQDEVELVGLTEAPRKVVVTGVEMFRKLLDQAQAGD
NIGALLRGVQRNEIERGQVLAKTGSVKAHTKFTAEVYVLKKEEGGRHTPFFDGYRPQF
YFRTTDVTGACKLPEGIEMVMPGDNVTMEVDLINSIVVEEGLRFSIREGGRTVASGVV
ATIIE"
misc_feature 110053..111243
/locus_tag="CDBI1_00400"
/note="elongation factor Tu; Reviewed; Region: PRK00049"
/db_xref="CDD:178823"
misc_feature 110083..110667
/locus_tag="CDBI1_00400"
/note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
Region: EF_Tu; cd01884"
/db_xref="CDD:206671"
misc_feature 110107..110130
/locus_tag="CDBI1_00400"
/note="G1 box; other site"
/db_xref="CDD:206671"
misc_feature order(110110..110112,110116..110118,110128..110133,
110140..110142,110149..110154,110164..110166,
110251..110256,110308..110313,110380..110385,
110389..110400,110407..110409,110500..110502,
110512..110514,110590..110595)
/locus_tag="CDBI1_00400"
/note="GEF interaction site [polypeptide binding]; other
site"
/db_xref="CDD:206671"
misc_feature order(110116..110133,110194..110196,110461..110466,
110470..110472,110575..110583)
/locus_tag="CDBI1_00400"
/note="GTP/Mg2+ binding site [chemical binding]; other
site"
/db_xref="CDD:206671"
misc_feature 110221..110253
/locus_tag="CDBI1_00400"
/note="Switch I region; other site"
/db_xref="CDD:206671"
misc_feature 110239..110241
/locus_tag="CDBI1_00400"
/note="G2 box; other site"
/db_xref="CDD:206671"
misc_feature 110296..110307
/locus_tag="CDBI1_00400"
/note="G3 box; other site"
/db_xref="CDD:206671"
misc_feature 110302..110358
/locus_tag="CDBI1_00400"
/note="Switch II region; other site"
/db_xref="CDD:206671"
misc_feature 110461..110472
/locus_tag="CDBI1_00400"
/note="G4 box; other site"
/db_xref="CDD:206671"
misc_feature 110575..110583
/locus_tag="CDBI1_00400"
/note="G5 box; other site"
/db_xref="CDD:206671"
misc_feature 110689..110952
/locus_tag="CDBI1_00400"
/note="EFTU_II: Elongation factor Tu domain II. Elongation
factors Tu (EF-Tu) are three-domain GTPases with an
essential function in the elongation phase of mRNA
translation. The GTPase center of EF-Tu is in the
N-terminal domain (domain I), also known as the...;
Region: EFTU_II; cd03697"
/db_xref="CDD:58088"
misc_feature 110959..111228
/locus_tag="CDBI1_00400"
/note="Domain III of elongation factor (EF) Tu. Ef-Tu
consists of three structural domains, designated I, II and
III. Domain III adopts a beta barrel structure. Domain III
is involved in binding to both charged tRNA and binding to
elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
/db_xref="CDD:58073"
misc_feature order(110995..110997,111001..111009,111061..111063,
111181..111189,111217..111219)
/locus_tag="CDBI1_00400"
/note="Antibiotic Binding Site [chemical binding]; other
site"
/db_xref="CDD:58073"
gene 111619..111930
/locus_tag="CDBI1_00405"
/db_xref="GeneID:12215642"
CDS 111619..111930
/locus_tag="CDBI1_00405"
/note="COG0051 Ribosomal protein S10"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S10"
/protein_id="YP_006197250.1"
/db_xref="GI:384359398"
/db_xref="GeneID:12215642"
/translation="MAKNEKIRIRLKSYDHKLLDFSAGKIVETAKKAGSQVSGPVPLP
TEKQVVTILRAVHKYKDSREQFEIRTHKRLIDIANPTPKTVDSLMRLDLPAGVDIEIK
L"
misc_feature 111625..111927
/locus_tag="CDBI1_00405"
/note="30S ribosomal protein S10; Reviewed; Region: rpsJ;
PRK00596"
/db_xref="CDD:179076"
gene 112022..112651
/gene="rplC"
/locus_tag="CDBI1_00410"
/db_xref="GeneID:12215643"
CDS 112022..112651
/gene="rplC"
/locus_tag="CDBI1_00410"
/note="COG0087 Ribosomal protein L3"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L3"
/protein_id="YP_006197251.1"
/db_xref="GI:384359399"
/db_xref="GeneID:12215643"
/translation="MKGILGKKVGMTQIFTDKGVVIPVTAVEAGPMVVTQIKTVDKDG
YNAIQIGFEDAKEKALNKPKKGHLAAANVLKKHLKEFRVDSVEGYTVGQEIKADVFEA
GAKIDVTGISKGKGFQGPIKRHGQSRGPETHGSRYHRRPGSMGACSYPGRVFKNKKLA
GHMGSVKVTVQNLEVVKVDADKNLILVKGAIPGAKGSVVTIKEAIKVSK"
misc_feature 112022..112648
/gene="rplC"
/locus_tag="CDBI1_00410"
/note="50S ribosomal protein L3; Validated; Region: rplC;
PRK00001"
/db_xref="CDD:178784"
gene 112681..113304
/gene="rplD"
/locus_tag="CDBI1_00415"
/db_xref="GeneID:12215644"
CDS 112681..113304
/gene="rplD"
/locus_tag="CDBI1_00415"
/note="COG0088 Ribosomal protein L4"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L4"
/protein_id="YP_006197252.1"
/db_xref="GI:384359400"
/db_xref="GeneID:12215644"
/translation="MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANK
RQGTQSAKTRAEVRGGGRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLP
KKVRRLAMKSALSSKVQNSEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKN
DNVIKSARNIEGVQTALVNTMNVYDILKYDSFIITTDAVKKVEEVYA"
misc_feature 112684..113301
/gene="rplD"
/locus_tag="CDBI1_00415"
/note="50S ribosomal protein L4; Provisional; Region:
rplD; PRK05319"
/db_xref="CDD:180011"
gene 113304..113594
/gene="rplW"
/locus_tag="CDBI1_00420"
/db_xref="GeneID:12215645"
CDS 113304..113594
/gene="rplW"
/locus_tag="CDBI1_00420"
/note="COG0089 Ribosomal protein L23"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L23"
/protein_id="YP_006197253.1"
/db_xref="GI:384359401"
/db_xref="GeneID:12215645"
/translation="MTNPHDVIIRPVVTEHSMAEMGEKKYTFVVAKDANKTEIKKAVE
KVFGVSVDKVNTLNYDGKVKRMGRTQGRTASFKKAVVKLTADSKEIEFFQGM"
misc_feature 113316..113591
/gene="rplW"
/locus_tag="CDBI1_00420"
/note="50S ribosomal protein L23; Reviewed; Region: rplW;
PRK05738"
/db_xref="CDD:180228"
gene 113624..114454
/gene="rplB"
/locus_tag="CDBI1_00425"
/db_xref="GeneID:12215646"
CDS 113624..114454
/gene="rplB"
/locus_tag="CDBI1_00425"
/note="COG0090 Ribosomal protein L2"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L2"
/protein_id="YP_006197254.1"
/db_xref="GI:384359402"
/db_xref="GeneID:12215646"
/translation="MAIKKFRPTSPALRQMTVLVSDEITCNQPEKSLLVNLKKNAGRN
VHGRITVRHRGGGQKRKYRIIDFKRDKDGIPAKVATIEYDPNRTANIALLNYADGEKR
YILAPVGINVGDTILSGLGADIKPGNCLALKDMPVGTIIHNIELKPGKGAQLVRSAGV
SAQLMAKEGKNALLRLPSGEMRLVSINCKATIGQVGNIEHGNVVIGKAGRKRHMGIRP
TVRGSVMNPNDHPHGGGEGRSPIGRPSPVTPWGKPALGYKTRKKNKASNKLIVSRRTK
"
misc_feature 113624..114451
/gene="rplB"
/locus_tag="CDBI1_00425"
/note="50S ribosomal protein L2; Validated; Region: rplB;
PRK09374"
/db_xref="CDD:181807"
misc_feature 113747..113977
/gene="rplB"
/locus_tag="CDBI1_00425"
/note="Ribosomal Proteins L2, RNA binding domain; Region:
Ribosomal_L2; pfam00181"
/db_xref="CDD:109247"
misc_feature 113993..114382
/gene="rplB"
/locus_tag="CDBI1_00425"
/note="Ribosomal Proteins L2, C-terminal domain; Region:
Ribosomal_L2_C; pfam03947"
/db_xref="CDD:202823"
gene 114489..114770
/gene="rpsS"
/locus_tag="CDBI1_00430"
/db_xref="GeneID:12215647"
CDS 114489..114770
/gene="rpsS"
/locus_tag="CDBI1_00430"
/note="COG0185 Ribosomal protein S19"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S19"
/protein_id="YP_006197255.1"
/db_xref="GI:384359403"
/db_xref="GeneID:12215647"
/translation="MSRSTKKGPFVHARLLKKIEAMNASGNKEVIKTWSRSSTVFPQM
VENTIAVHDGRKHVPVYITEDMVGHKLGEFVPTRTFKGHKDDEKSNKRK"
misc_feature 114489..114764
/gene="rpsS"
/locus_tag="CDBI1_00430"
/note="30S ribosomal protein S19; Reviewed; Region: rpsS;
PRK00357"
/db_xref="CDD:178985"
gene 114802..115137
/gene="rplV"
/locus_tag="CDBI1_00435"
/db_xref="GeneID:12215648"
CDS 114802..115137
/gene="rplV"
/locus_tag="CDBI1_00435"
/note="COG0091 Ribosomal protein L22"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L22"
/protein_id="YP_006197256.1"
/db_xref="GI:384359404"
/db_xref="GeneID:12215648"
/translation="MEAKATAKYVRVSPRKAGQICDLVRGKNVDEALAILKFTPRGAA
SIIAKVVKSAKANAENNHEMDTEKLYIASIVANQGPTMKRFMPRAMGRATTIRKRTSH
IEVVVKEKK"
misc_feature 114808..115122
/gene="rplV"
/locus_tag="CDBI1_00435"
/note="Ribosomal protein L22/L17e. L22 (L17 in
eukaryotes) is a core protein of the large ribosomal
subunit. It is the only ribosomal protein that interacts
with all six domains of 23S rRNA, and is one of the
proteins important for directing the proper...; Region:
Ribosomal_L22; cd00336"
/db_xref="CDD:48343"
misc_feature order(114808..114813,114877..114885,114889..114894,
114898..114903,114964..114981,115006..115023,
115117..115122)
/gene="rplV"
/locus_tag="CDBI1_00435"
/note="putative translocon binding site; other site"
/db_xref="CDD:48343"
misc_feature order(114817..114819,114823..114825,114832..114834,
114838..114846,114853..114855,114865..114867,
114874..114876,114958..114960,114970..114972,
114979..114981,115018..115020,115024..115032,
115036..115038,115045..115047,115081..115098)
/gene="rplV"
/locus_tag="CDBI1_00435"
/note="protein-rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:48343"
gene 115160..115975
/gene="rpsC"
/locus_tag="CDBI1_00440"
/db_xref="GeneID:12215649"
CDS 115160..115975
/gene="rpsC"
/locus_tag="CDBI1_00440"
/note="COG0092 Ribosomal protein S3"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S3"
/protein_id="YP_006197257.1"
/db_xref="GI:384359405"
/db_xref="GeneID:12215649"
/translation="MGQKVNPHGLRVGVIKDWDSRWFATDKKEFGNLLLEDHNIRKFL
KKRLYSAGVAKIEIERSANKIKMDLHVAKPGVVIGRAGAGIEALKAELEKMTKKTIIV
NIVEVRSTDKNAQLVAENIALAIERRVAFRRAMKQAIQRAMKSGAKGIKVSASGRLGG
AEMARTEGYSEGNVPLQTLRADIDYGFAEADTTYGKIGIKVWICNGEVLPTRDGVNPR
EESRKSDRRDNKRDNRRNDRRGNDRRGNDNRGNYRGQRPQGGSRPQRTENKGN"
misc_feature 115160..115828
/gene="rpsC"
/locus_tag="CDBI1_00440"
/note="30S ribosomal protein S3; Reviewed; Region: rpsC;
PRK00310"
/db_xref="CDD:178972"
misc_feature 115163..115483
/gene="rpsC"
/locus_tag="CDBI1_00440"
/note="K homology RNA-binding (KH) domain of the
prokaryotic 30S small ribosomal subunit protein S3. S3 is
part of the head region of the 30S ribosomal subunit and
is believed to interact with mRNA as it threads its way
from the latch into the channel. The KH...; Region:
30S_S3_KH; cd02412"
/db_xref="CDD:48410"
misc_feature 115394..115405
/gene="rpsC"
/locus_tag="CDBI1_00440"
/note="G-X-X-G motif; other site"
/db_xref="CDD:48410"
misc_feature 115517..115768
/gene="rpsC"
/locus_tag="CDBI1_00440"
/note="Ribosomal protein S3, C-terminal domain; Region:
Ribosomal_S3_C; pfam00189"
/db_xref="CDD:201068"
gene 116011..116442
/gene="rplP"
/locus_tag="CDBI1_00445"
/db_xref="GeneID:12215650"
CDS 116011..116442
/gene="rplP"
/locus_tag="CDBI1_00445"
/note="COG0197 Ribosomal protein L16/L10E"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L16"
/protein_id="YP_006197258.1"
/db_xref="GI:384359406"
/db_xref="GeneID:12215650"
/translation="MLMPKRVKRRRVHRGSMAGQAHKGNKVTYGEFGLVALEASWITS
NQIEAARIAMTRYIKRGGKVWIKIFPHKPVTRKPAETRMGAGKGSPEYWVAVVKPGRV
MFELAGVSEDKAREAMRLAAHKLPIKCKFVKKEDLEVKGGE"
misc_feature 116077..116406
/gene="rplP"
/locus_tag="CDBI1_00445"
/note="Ribosomal_L16_L10e: L16 is an essential protein in
the large ribosomal subunit of bacteria, mitochondria, and
chloroplasts. Large subunits that lack L16 are defective
in peptidyl transferase activity, peptidyl-tRNA hydrolysis
activity, association with...; Region: Ribosomal_L16_L10e;
cd01433"
/db_xref="CDD:88606"
misc_feature order(116077..116079,116083..116088,116095..116097,
116143..116148,116155..116157,116164..116166,
116176..116178,116185..116187,116203..116211,
116215..116217,116221..116223,116233..116238,
116257..116271,116311..116313,116365..116370,
116377..116382)
/gene="rplP"
/locus_tag="CDBI1_00445"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88606"
misc_feature 116122..116127
/gene="rplP"
/locus_tag="CDBI1_00445"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:88606"
misc_feature order(116158..116166,116173..116178)
/gene="rplP"
/locus_tag="CDBI1_00445"
/note="putative antibiotic binding site [chemical
binding]; other site"
/db_xref="CDD:88606"
misc_feature order(116185..116187,116194..116199,116203..116205,
116329..116331)
/gene="rplP"
/locus_tag="CDBI1_00445"
/note="L25 interface [polypeptide binding]; other site"
/db_xref="CDD:88606"
misc_feature order(116251..116256,116263..116268)
/gene="rplP"
/locus_tag="CDBI1_00445"
/note="L27 interface [polypeptide binding]; other site"
/db_xref="CDD:88606"
gene 116444..116647
/locus_tag="CDBI1_00450"
/db_xref="GeneID:12215651"
CDS 116444..116647
/locus_tag="CDBI1_00450"
/note="COG0255 Ribosomal protein L29"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L29"
/protein_id="YP_006197259.1"
/db_xref="GI:384359407"
/db_xref="GeneID:12215651"
/translation="MKAKELRDLTSEELMNKLNDFKSELFSLRFQLATGQLENTARIK
FVKKDIAKVKTVLAERKLYETRA"
misc_feature 116453..116623
/locus_tag="CDBI1_00450"
/note="Ribosomal L29 protein/HIP. L29 is a protein of the
large ribosomal Subunit. A homolog, called heparin/heparan
sulfate interacting protein (HIP), has also been
identified in mammals. L29 is located on the surface of
the large ribosomal subunit, where it...; Region:
Ribosomal_L29_HIP; cd00427"
/db_xref="CDD:88602"
misc_feature order(116453..116455,116462..116464,116564..116566,
116594..116599,116603..116608,116618..116620)
/locus_tag="CDBI1_00450"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88602"
misc_feature order(116453..116461,116465..116467,116477..116482,
116486..116491,116498..116503,116510..116515,
116522..116524,116531..116536,116558..116560,
116567..116569,116579..116581,116588..116593,
116600..116605,116612..116614)
/locus_tag="CDBI1_00450"
/note="putative translocon interaction site; other site"
/db_xref="CDD:88602"
misc_feature order(116501..116503,116513..116515,116522..116524,
116534..116536,116579..116581)
/locus_tag="CDBI1_00450"
/note="signal recognition particle (SRP54) interaction
site; other site"
/db_xref="CDD:88602"
misc_feature order(116519..116521,116528..116533)
/locus_tag="CDBI1_00450"
/note="L23 interface [polypeptide binding]; other site"
/db_xref="CDD:88602"
misc_feature 116540..116545
/locus_tag="CDBI1_00450"
/note="trigger factor interaction site; other site"
/db_xref="CDD:88602"
gene 116671..116925
/locus_tag="CDBI1_00455"
/db_xref="GeneID:12215652"
CDS 116671..116925
/locus_tag="CDBI1_00455"
/note="COG0186 Ribosomal protein S17"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S17"
/protein_id="YP_006197260.1"
/db_xref="GI:384359408"
/db_xref="GeneID:12215652"
/translation="MERGRRKVRIGRVVSDKMDKTIVVAVEEFVRHPLYNKRVKRTKK
FKAHDEKNICNIGDRVKIMETRPLSKDKRFRLVEVVEKVK"
misc_feature 116713..116922
/locus_tag="CDBI1_00455"
/note="30S ribosomal protein S17; Reviewed; Region: rpsQ;
PRK05610"
/db_xref="CDD:180162"
gene 116951..117319
/gene="rplN"
/locus_tag="CDBI1_00460"
/db_xref="GeneID:12215653"
CDS 116951..117319
/gene="rplN"
/locus_tag="CDBI1_00460"
/note="COG0093 Ribosomal protein L14"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L14"
/protein_id="YP_006197261.1"
/db_xref="GI:384359409"
/db_xref="GeneID:12215653"
/translation="MIQQESRLRVADNSGAKELLCIRVLGGSKRRYGNIGDVIVATVK
SATPGGVVKKGKVVKAVIVRSKQGVRRNDGSYISFDENAAVIIKDDKTPVGTRIFGPV
ARELRDNEFMKIVSLAPEVL"
misc_feature 116951..117316
/gene="rplN"
/locus_tag="CDBI1_00460"
/note="50S ribosomal protein L14; Validated; Region: rplN;
PRK05483"
/db_xref="CDD:180117"
gene 117343..117648
/gene="rplX"
/locus_tag="CDBI1_00465"
/db_xref="GeneID:12215654"
CDS 117343..117648
/gene="rplX"
/locus_tag="CDBI1_00465"
/note="COG0198 Ribosomal protein L24"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L24"
/protein_id="YP_006197262.1"
/db_xref="GI:384359410"
/db_xref="GeneID:12215654"
/translation="MRVKKGDTVVVIAGKDKGKKGSVLKVYPKTSKVLVEGVNVITKH
QKPSAMNQQGGIINKEAPIHISNVMPFDPETGKGVRVRYEVKDGNKVRVSAKSGKEL"
misc_feature 117343..117645
/gene="rplX"
/locus_tag="CDBI1_00465"
/note="50S ribosomal protein L24; Reviewed; Region: rplX;
PRK00004"
/db_xref="CDD:178786"
misc_feature 117343..117546
/gene="rplX"
/locus_tag="CDBI1_00465"
/note="50S ribosomal protein L24; Reviewed; Region: rplX;
PRK12281"
/db_xref="CDD:183399"
gene 117678..118220
/gene="rplE"
/locus_tag="CDBI1_00470"
/db_xref="GeneID:12215655"
CDS 117678..118220
/gene="rplE"
/locus_tag="CDBI1_00470"
/note="COG0094 Ribosomal protein L5"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L5"
/protein_id="YP_006197263.1"
/db_xref="GI:384359411"
/db_xref="GeneID:12215655"
/translation="MASRLQEKYMKEVAPALMEKFGYKNVMEIPKLNKIVINMGIGDA
RENPKGLEKGVEELEMISGQKPVITKARKSVANFKLREGMPIGTKVTLRADKMFYFMD
KLVSVSLPRVRDFRGVNPNAFDGRGNYALGVKEQLIFPEIEYDKIDKVRGMDIIFVTT
AKTDEEARELLKLLGMPFSK"
misc_feature 117684..118217
/gene="rplE"
/locus_tag="CDBI1_00470"
/note="50S ribosomal protein L5; Validated; Region: rplE;
PRK00010"
/db_xref="CDD:178791"
misc_feature 117750..117920
/gene="rplE"
/locus_tag="CDBI1_00470"
/note="Ribosomal protein L5; Region: Ribosomal_L5;
pfam00281"
/db_xref="CDD:109342"
misc_feature 117930..118211
/gene="rplE"
/locus_tag="CDBI1_00470"
/note="ribosomal L5P family C-terminus; Region:
Ribosomal_L5_C; pfam00673"
/db_xref="CDD:201383"
gene 118238..118423
/gene="rpsN"
/locus_tag="CDBI1_00475"
/db_xref="GeneID:12215656"
CDS 118238..118423
/gene="rpsN"
/locus_tag="CDBI1_00475"
/note="COG0199 Ribosomal protein S14"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S14"
/protein_id="YP_006197264.1"
/db_xref="GI:384359412"
/db_xref="GeneID:12215656"
/translation="MARKAMVVKQQRKQKYATREYTRCTICGRPHSVLKKFGICRICF
RELAYKGQIPGVRKASW"
misc_feature 118238..118420
/gene="rpsN"
/locus_tag="CDBI1_00475"
/note="30S ribosomal protein S14; Reviewed; Region: rpsN;
PRK08061"
/db_xref="CDD:181216"
gene 118456..118854
/gene="rpsH"
/locus_tag="CDBI1_00480"
/db_xref="GeneID:12215657"
CDS 118456..118854
/gene="rpsH"
/locus_tag="CDBI1_00480"
/note="COG0096 Ribosomal protein S8"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S8"
/protein_id="YP_006197265.1"
/db_xref="GI:384359413"
/db_xref="GeneID:12215657"
/translation="MTMTDPIADMLTRIRNANVVKHETVDVPASNMKKELARILLEEG
FIRGYDVIEDGKQGIIRIQLKYGQEGERVITGLKKISKPGMRVYAANHEIPKVLNGLG
ISVISTSKGILTDKQARKENVGGEVICYVW"
misc_feature 118459..118851
/gene="rpsH"
/locus_tag="CDBI1_00480"
/note="30S ribosomal protein S8; Validated; Region: rpsH;
PRK00136"
/db_xref="CDD:178892"
gene 118885..119427
/gene="rplF"
/locus_tag="CDBI1_00485"
/db_xref="GeneID:12215658"
CDS 118885..119427
/gene="rplF"
/locus_tag="CDBI1_00485"
/note="COG0097 Ribosomal protein L6P/L9E"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L6"
/protein_id="YP_006197266.1"
/db_xref="GI:384359414"
/db_xref="GeneID:12215658"
/translation="MSRIGVKPIIIPAGVEVTIAEGNLVTVKGPKGTLTKQLSAELNI
KKEENTIMVERPTDNKKHRSLHGLTRTLLDNMVVGVNTGFEKKLELKGVGYRAQKQGK
KLVMNLGFSHPVEMEDPEGITVEAPNQTELIVKGIDKQLVGNYAAKIRAWRKPEPYKG
KGIKYVDEVIRRKEGKTGKK"
misc_feature 118885..119421
/gene="rplF"
/locus_tag="CDBI1_00485"
/note="50S ribosomal protein L6; Validated; Region: rplF;
PRK05498"
/db_xref="CDD:180118"
misc_feature 118915..119124
/gene="rplF"
/locus_tag="CDBI1_00485"
/note="Ribosomal protein L6; Region: Ribosomal_L6;
pfam00347"
/db_xref="CDD:109407"
misc_feature 119158..119379
/gene="rplF"
/locus_tag="CDBI1_00485"
/note="Ribosomal protein L6; Region: Ribosomal_L6;
pfam00347"
/db_xref="CDD:109407"
gene 119463..119831
/gene="rplR"
/locus_tag="CDBI1_00490"
/db_xref="GeneID:12215659"
CDS 119463..119831
/gene="rplR"
/locus_tag="CDBI1_00490"
/note="COG0256 Ribosomal protein L18"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L18"
/protein_id="YP_006197267.1"
/db_xref="GI:384359415"
/db_xref="GeneID:12215659"
/translation="MLKKADKNANRLQRHKRVRRKISGTSQRPRLCVFRSANNIYAQI
IDDTKRVTLVAASSLEAEVKSAVNHTGNKEAAKKVGELVAKKAVEKGITEVVFDRGGY
LYHGRIQELAEGAREAGLKF"
misc_feature 119517..119822
/gene="rplR"
/locus_tag="CDBI1_00490"
/note="Ribosomal L18/L5e: L18 (L5e) is a ribosomal
protein found in the central protuberance (CP) of the
large subunit. L18 binds 5S rRNA and induces a
conformational change that stimulates the binding of L5 to
5S rRNA. Association of 5S rRNA with 23S rRNA...; Region:
Ribosomal_L18_L5e; cd00432"
/db_xref="CDD:88603"
misc_feature order(119520..119522,119526..119531,119535..119537,
119550..119552,119562..119579,119583..119585,
119589..119591,119610..119618,119625..119627,
119748..119750,119781..119783)
/gene="rplR"
/locus_tag="CDBI1_00490"
/note="5S rRNA interface [nucleotide binding]; other site"
/db_xref="CDD:88603"
misc_feature order(119520..119522,119529..119534)
/gene="rplR"
/locus_tag="CDBI1_00490"
/note="L27 interface [polypeptide binding]; other site"
/db_xref="CDD:88603"
misc_feature order(119523..119528,119751..119753,119760..119762,
119808..119810)
/gene="rplR"
/locus_tag="CDBI1_00490"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88603"
misc_feature 119766..119768
/gene="rplR"
/locus_tag="CDBI1_00490"
/note="L5 interface [polypeptide binding]; other site"
/db_xref="CDD:88603"
gene 119852..120361
/gene="rpsE"
/locus_tag="CDBI1_00495"
/db_xref="GeneID:12215660"
CDS 119852..120361
/gene="rpsE"
/locus_tag="CDBI1_00495"
/note="COG0098 Ribosomal protein S5"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S5"
/protein_id="YP_006197268.1"
/db_xref="GI:384359416"
/db_xref="GeneID:12215660"
/translation="MLRRKPIDAGQLDLQEKVVEVRRVTKVVKGGRNFRFAALVVVGD
ENGHVGIGAGKAMEVPDAIKKAVEDAKKNLIVVPIVGTTIPHEVRGHFGAGNILIMPA
VEGTGVIAGGPARAVLELAGLKDVRAKSLGSNNPRNMVNATIEGLNSLKTVEDIAKLR
GKKVEELLG"
misc_feature 119858..120358
/gene="rpsE"
/locus_tag="CDBI1_00495"
/note="30S ribosomal protein S5; Validated; Region: rpsE;
PRK00550"
/db_xref="CDD:179061"
misc_feature <119951..120088
/gene="rpsE"
/locus_tag="CDBI1_00495"
/note="Ribosomal protein S5, N-terminal domain; Region:
Ribosomal_S5; pfam00333"
/db_xref="CDD:144065"
misc_feature 120113..120334
/gene="rpsE"
/locus_tag="CDBI1_00495"
/note="Ribosomal protein S5, C-terminal domain; Region:
Ribosomal_S5_C; pfam03719"
/db_xref="CDD:190724"
gene 120376..120561
/gene="rpmD"
/locus_tag="CDBI1_00500"
/db_xref="GeneID:12215661"
CDS 120376..120561
/gene="rpmD"
/locus_tag="CDBI1_00500"
/note="COG1841 Ribosomal protein L30/L7E"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L30"
/protein_id="YP_006197269.1"
/db_xref="GI:384359417"
/db_xref="GeneID:12215661"
/translation="MAKLQIKLVRSVIGTTPNQKKNVEALGLRKREQVVVKEDNAQTR
GMINKVSHLLEVTEIAE"
misc_feature 120385..120543
/gene="rpmD"
/locus_tag="CDBI1_00500"
/note="Ribosomal protein L30, which is found in eukaryotes
and prokaryotes but not in archaea, is one of the smallest
ribosomal proteins with a molecular mass of about 7kDa.
L30 binds the 23SrRNA as well as the 5S rRNA and is one of
five ribosomal proteins that...; Region: Ribosomal_L30;
cd01658"
/db_xref="CDD:100100"
misc_feature order(120403..120408,120412..120417,120421..120429,
120436..120441,120448..120456,120460..120462,
120469..120471,120484..120489,120496..120504,
120508..120513)
/gene="rpmD"
/locus_tag="CDBI1_00500"
/note="23S rRNA binding site [nucleotide binding]; other
site"
/db_xref="CDD:100100"
gene 120594..121037
/gene="rplO"
/locus_tag="CDBI1_00505"
/db_xref="GeneID:12215662"
CDS 120594..121037
/gene="rplO"
/locus_tag="CDBI1_00505"
/note="COG0200 Ribosomal protein L15"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L15"
/protein_id="YP_006197270.1"
/db_xref="GI:384359418"
/db_xref="GeneID:12215662"
/translation="MKLHELKPAEGAVRAKRRLGRGTATGQGKTAGRGQKGQWSRSGG
GVRVGFEGGQMPLARRLPKRGFNNIFKKVYTEVNVEVLNRFENGTEITAELLKSTKTI
SKIGKDGIKILGEGNLEKALTVKAAKFTASAQEKIEKAGGKAELV"
misc_feature 120594..121034
/gene="rplO"
/locus_tag="CDBI1_00505"
/note="50S ribosomal protein L15; Reviewed; Region: rplO;
PRK05592"
/db_xref="CDD:180155"
gene 121081..122349
/locus_tag="CDBI1_00510"
/db_xref="GeneID:12215663"
CDS 121081..122349
/locus_tag="CDBI1_00510"
/note="COG0201 Preprotein translocase subunit SecY"
/codon_start=1
/transl_table=11
/product="preprotein translocase SecY subunit"
/protein_id="YP_006197271.1"
/db_xref="GI:384359419"
/db_xref="GeneID:12215663"
/translation="MLSKLKQAWKIKAVRKKVMYTLMMIVIFRIGTTIPVPGIDTSII
QKMVGGNSLLSLYNMFTGGAFSNFSLFALGISPYITASIIIQLLTVGFESLAELQKSG
EEGKKKINKYTKYTALALAVVQALGITLGIVRSALISNSVFFITTVVITLVSASMLVM
WIGDKITEKGIGNGSSVIIFAGIISRIPTDVIKISQQVKSGEVAPWVIVILAVVILLT
VTGVTFIQEATRKIPVQYAKRVVGRKMYGGQSSHIPMKVNQSGVMPIIFASSLLAFPQ
TIAMFMGPNAQAFVQKYLSMATEQGFWTYRSIEILLIIFFSYFYTTVSFNTEDISKNM
KNNGGFIPGIRPGEPTMDYLNRILTRLTLAGATFLAIIAMVPALTTHYMKVNMSLAGT
SLLIVVGVALELKRQLESNLVMRSYQGFLK"
misc_feature 121081..122343
/locus_tag="CDBI1_00510"
/note="preprotein translocase subunit SecY; Reviewed;
Region: secY; PRK09204"
/db_xref="CDD:181698"
misc_feature 121285..122292
/locus_tag="CDBI1_00510"
/note="SecY translocase; Region: SecY; pfam00344"
/db_xref="CDD:201169"
gene 122366..123016
/gene="adk"
/locus_tag="CDBI1_00515"
/db_xref="GeneID:12215664"
CDS 122366..123016
/gene="adk"
/locus_tag="CDBI1_00515"
/EC_number="2.7.4.3"
/note="COG0563 Adenylate kinase and related kinases"
/codon_start=1
/transl_table=11
/product="adenylate kinase"
/protein_id="YP_006197272.1"
/db_xref="GI:384359420"
/db_xref="GeneID:12215664"
/translation="MRIILLGPPGAGKGTQAAGIVEKYNIPHISTGDIFRKNIKEGTE
LGKKAKEYMDQGLLVPDELTVGLVTDRISQEDCKNGFMLDGFPRNVAQGEHLDIFLKN
AGISLDKVVNIEVDKSILVSRAVGRRICKSCGATYHVEFNPPKVEGVCDVCQGELYQR
ADDNEETVSKRIQVYLDETKPLVDYYSKQGIIADIKGDQAIDKVFEDIVAALGSGK"
misc_feature 122366..123007
/gene="adk"
/locus_tag="CDBI1_00515"
/note="adenylate kinase; Reviewed; Region: adk; PRK00279"
/db_xref="CDD:178957"
misc_feature 122369..122977
/gene="adk"
/locus_tag="CDBI1_00515"
/note="Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP) to
adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for...; Region: ADK;
cd01428"
/db_xref="CDD:30189"
misc_feature order(122456..122458,122471..122473,122540..122542,
122615..122620,122624..122629,122639..122641)
/gene="adk"
/locus_tag="CDBI1_00515"
/note="AMP-binding site [chemical binding]; other site"
/db_xref="CDD:30189"
misc_feature order(122471..122473,122615..122617,122627..122629,
122744..122746,122876..122878,122888..122890)
/gene="adk"
/locus_tag="CDBI1_00515"
/note="ATP-AMP (Ap5A)-binding site [chemical binding];
other site"
/db_xref="CDD:30189"
gene 123017..123763
/locus_tag="CDBI1_00520"
/db_xref="GeneID:12215665"
CDS 123017..123763
/locus_tag="CDBI1_00520"
/note="COG0024 Methionine aminopeptidase"
/codon_start=1
/transl_table=11
/product="methionine aminopeptidase"
/protein_id="YP_006197273.1"
/db_xref="GI:384359421"
/db_xref="GeneID:12215665"
/translation="MIILKSKKEIELLREAGKIVADTHEVLRKAISPGISTLELDKIA
EENIRKYNAEPSFKGYGGFPGSICASINREVVHGIPGETILQEGDIVSLDIGAYYKGY
HGDSAKTHGVGMISEEDRKLIEVTRESFYEGIKFAKLGYRLSDISHAVQTHVEKHGFS
VVRDLVGHGVGANLHEDPQVPNYGLPGKGPRLREGMVIAIEPMVNAGRYHVKTLSDGW
TTVTIDGKKSAHYEHTIAITEHEPLILTKL"
misc_feature 123044..123757
/locus_tag="CDBI1_00520"
/note="Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides;
Region: MetAP1; cd01086"
/db_xref="CDD:29971"
misc_feature order(123245..123247,123296..123298,123329..123331,
123518..123520,123617..123619,123710..123712)
/locus_tag="CDBI1_00520"
/note="active site"
/db_xref="CDD:29971"
gene 123785..124054
/locus_tag="CDBI1_00525"
/db_xref="GeneID:12215666"
CDS 123785..124054
/locus_tag="CDBI1_00525"
/note="COG2163 Ribosomal protein L14E/L6E/L27E"
/codon_start=1
/transl_table=11
/product="ribosomal protein"
/protein_id="YP_006197274.1"
/db_xref="GI:384359422"
/db_xref="GeneID:12215666"
/translation="MLSDNLSIGQVVKVSLGRDKGNLFFVVKIINNEYVLIADGKKRK
LDKPKLKKVKHLKKYNFINDEVRKRVVSGQEITDSFLRAELTKLN"
misc_feature 123800..>123904
/locus_tag="CDBI1_00525"
/note="Ribosomal protein L14E/L6E/L27E [Translation,
ribosomal structure and biogenesis]; Region: RPL14A;
COG2163"
/db_xref="CDD:32346"
gene 124092..124310
/gene="infA"
/locus_tag="CDBI1_00530"
/db_xref="GeneID:12215667"
CDS 124092..124310
/gene="infA"
/locus_tag="CDBI1_00530"
/note="COG0361 Translation initiation factor 1 (IF-1)"
/codon_start=1
/transl_table=11
/product="translation initiation factor IF-1"
/protein_id="YP_006197275.1"
/db_xref="GI:384359423"
/db_xref="GeneID:12215667"
/translation="MAKKDVIELEGTVSEALPNAMFKVKLENGHEILCHISGKLRMNF
IRILEGDKVNVELSPYDLTRGRITWRKK"
misc_feature 124110..124301
/gene="infA"
/locus_tag="CDBI1_00530"
/note="S1_IF1: Translation Initiation Factor IF1, S1-like
RNA-binding domain. IF1 contains an S1-like RNA-binding
domain, which is found in a wide variety of RNA-associated
proteins. Translation initiation includes a number of
interrelated steps preceding the...; Region: S1_IF1;
cd04451"
/db_xref="CDD:88417"
misc_feature order(124134..124142,124158..124160,124194..124196,
124203..124208,124221..124232,124281..124283,
124287..124289)
/gene="infA"
/locus_tag="CDBI1_00530"
/note="rRNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88417"
misc_feature order(124194..124196,124206..124208,124299..124301)
/gene="infA"
/locus_tag="CDBI1_00530"
/note="predicted 30S ribosome binding site; other site"
/db_xref="CDD:88417"
gene 124346..124459
/gene="rpmJ"
/locus_tag="CDBI1_00535"
/db_xref="GeneID:12215668"
CDS 124346..124459
/gene="rpmJ"
/locus_tag="CDBI1_00535"
/note="COG0257 Ribosomal protein L36"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L36"
/protein_id="YP_006197276.1"
/db_xref="GI:384359424"
/db_xref="GeneID:12215668"
/translation="MKVRPSVKPICEKCKVIKRKGKVMVICENPKHKQKQG"
misc_feature 124346..124456
/gene="rpmJ"
/locus_tag="CDBI1_00535"
/note="50S ribosomal protein L36; Reviewed; Region: rpmJ;
PRK00465"
/db_xref="CDD:179039"
gene 124612..124983
/gene="rpsM"
/locus_tag="CDBI1_00540"
/db_xref="GeneID:12215669"
CDS 124612..124983
/gene="rpsM"
/locus_tag="CDBI1_00540"
/note="COG0099 Ribosomal protein S13"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S13"
/protein_id="YP_006197277.1"
/db_xref="GI:384359425"
/db_xref="GeneID:12215669"
/translation="MARIAGVDLPREKRAEIGLTYIYGIGKATANEILAKAEINPDTR
IKDLSEDQVNELRKVIDDDFLVEGDLRREIALNIKRLRDIKCYRGIRHAKGLPLRGQR
TKTNARTRKGPRKTVSRKKKK"
misc_feature 124612..124977
/gene="rpsM"
/locus_tag="CDBI1_00540"
/note="30S ribosomal protein S13; Validated; Region: rpsM;
PRK05179"
/db_xref="CDD:179955"
misc_feature 124618..124956
/gene="rpsM"
/locus_tag="CDBI1_00540"
/note="Ribosomal protein S13/S18; Region: Ribosomal_S13;
cl00331"
/db_xref="CDD:214049"
gene 125019..125417
/locus_tag="CDBI1_00545"
/db_xref="GeneID:12215670"
CDS 125019..125417
/locus_tag="CDBI1_00545"
/note="COG0100 Ribosomal protein S11"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S11"
/protein_id="YP_006197278.1"
/db_xref="GI:384359426"
/db_xref="GeneID:12215670"
/translation="MAKPKKKVTRIRRRERKNIERGHAHIQSTFNNTIITLTDVHGNA
ISWASSGQLGFKGSRKSTPFASQMAAETAAKAAMEHGLKSVEVFVKGPGSGREAAIRA
LQATGLEVTMIKDVTPIPHNGCRPPKRRRV"
misc_feature 125082..125414
/locus_tag="CDBI1_00545"
/note="30S ribosomal protein S11; Validated; Region:
PRK05309"
/db_xref="CDD:180007"
gene 125449..126072
/gene="rpsD"
/locus_tag="CDBI1_00550"
/db_xref="GeneID:12215671"
CDS 125449..126072
/gene="rpsD"
/locus_tag="CDBI1_00550"
/note="COG0522 Ribosomal protein S4 and related proteins"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S4"
/protein_id="YP_006197279.1"
/db_xref="GI:384359427"
/db_xref="GeneID:12215671"
/translation="MARYTGASCRQCRREGMKLFLKGDRCYTDKCAIVKRNYAPGQHG
QGRKKVSNYGLQLREKQKVKRIYGVLETQFRNLYERAENMPGKAGENLLSLLERRLDN
VVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFKNL
VEVNSRIAPKWLEANVEGMTAKVVGVPTREDIDLEIAEHLIIELYSK"
misc_feature 125449..126069
/gene="rpsD"
/locus_tag="CDBI1_00550"
/note="30S ribosomal protein S4; Validated; Region: rpsD;
PRK05327"
/db_xref="CDD:180018"
misc_feature 125452..125739
/gene="rpsD"
/locus_tag="CDBI1_00550"
/note="Ribosomal protein S4/S9 N-terminal domain; Region:
Ribosomal_S4; pfam00163"
/db_xref="CDD:201048"
misc_feature 125740..125922
/gene="rpsD"
/locus_tag="CDBI1_00550"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cd00165"
/db_xref="CDD:29105"
misc_feature order(125743..125745,125779..125784,125788..125793,
125797..125802,125809..125814,125818..125820,
125839..125862,125866..125868)
/gene="rpsD"
/locus_tag="CDBI1_00550"
/note="RNA binding surface [nucleotide binding]; other
site"
/db_xref="CDD:29105"
gene 126150..127097
/locus_tag="CDBI1_00555"
/db_xref="GeneID:12215672"
CDS 126150..127097
/locus_tag="CDBI1_00555"
/EC_number="2.7.7.6"
/note="'COG0202 DNA-directed RNA polymerase, alpha
subunit/40 kD subunit'"
/codon_start=1
/transl_table=11
/product="DNA-directed RNA polymerase subunit alpha"
/protein_id="YP_006197280.1"
/db_xref="GI:384359428"
/db_xref="GeneID:12215672"
/translation="MIEIEKPKVDIVELSEDYRYGKFVIEPLERGYGITIGNALRRIL
LSSLPGVAVNAIKIDGVLHEFSTIPGVKEDVTEIILTLKELSATIDGEGSRTLKIEAQ
GPCSITGADIICPPDVEILSKDLAIATLDDNAKLNMEIFVDKGRGYVSAEENKTENVP
IGVLPVDSIYTPVEKVSYHVENTRVGQKTDYDKLVLEVWTNGSINPQEGISLAAKVLV
EHLNLFIDLTEHVSSVEIMVEKEEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVEE
LANKSEDDMMKVRNLGKKSLEEVIQKLEELGLGLKPSEE"
misc_feature 126153..127082
/locus_tag="CDBI1_00555"
/note="DNA-directed RNA polymerase subunit alpha;
Provisional; Region: PRK05182"
/db_xref="CDD:179956"
misc_feature 126192..126821
/locus_tag="CDBI1_00555"
/note="N-terminal domain of the Alpha subunit of Bacterial
RNA polymerase; Region: RNAP_alpha_NTD; cd06928"
/db_xref="CDD:132904"
misc_feature order(126213..126215,126249..126251,126261..126263,
126270..126275,126336..126338,126342..126344,
126348..126350,126354..126365,126378..126380,
126396..126398,126540..126542,126591..126593,
126648..126650,126654..126656,126672..126680,
126684..126695,126723..126725,126732..126734,
126738..126740)
/locus_tag="CDBI1_00555"
/note="alphaNTD - beta interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature order(126222..126224,126231..126233,126237..126245,
126252..126254,126264..126266,126273..126278,
126288..126290,126789..126791,126798..126803,
126807..126812,126816..126821)
/locus_tag="CDBI1_00555"
/note="alphaNTD homodimer interface [polypeptide binding];
other site"
/db_xref="CDD:132904"
misc_feature order(126342..126344,126378..126380,126387..126389,
126396..126401,126588..126593,126597..126599,
126654..126656,126669..126674,126699..126701)
/locus_tag="CDBI1_00555"
/note="alphaNTD - beta' interaction site [polypeptide
binding]; other site"
/db_xref="CDD:132904"
misc_feature 126864..127064
/locus_tag="CDBI1_00555"
/note="Bacterial RNA polymerase, alpha chain C terminal
domain; Region: RNA_pol_A_CTD; pfam03118"
/db_xref="CDD:202541"
gene 127118..127459
/gene="rplQ"
/locus_tag="CDBI1_00560"
/db_xref="GeneID:12215673"
CDS 127118..127459
/gene="rplQ"
/locus_tag="CDBI1_00560"
/note="COG0203 Ribosomal protein L17"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L17"
/protein_id="YP_006197281.1"
/db_xref="GI:384359429"
/db_xref="GeneID:12215673"
/translation="MAKYRKLGRETAHRNLMLRNLVTCLLRSGRIETTVTRAKETRRM
AEKMITLAKRGDLHARRQVLAYVMDETVVNNLFTDLAPKYAERNGGYTRIIKIGPRKG
DAAEMAFIELV"
misc_feature 127118..127456
/gene="rplQ"
/locus_tag="CDBI1_00560"
/note="50S ribosomal protein L17; Validated; Region: rplQ;
PRK05591"
/db_xref="CDD:180154"
gene 127580..128413
/locus_tag="CDBI1_00565"
/db_xref="GeneID:12215674"
CDS 127580..128413
/locus_tag="CDBI1_00565"
/note="'COG1122 ABC-type cobalt transport system, ATPase
component'"
/codon_start=1
/transl_table=11
/product="cobalt transporter ATP-binding subunit"
/protein_id="YP_006197282.1"
/db_xref="GI:384359430"
/db_xref="GeneID:12215674"
/translation="MDNIVKVNNISFEYITDEAKLKAIDNLSLDVKKGEFVAIIGHNG
SGKSTLSKNLNAILMPTEGNILIDDMDTKEEERLWDIRQTAGMVFQNPDNQIVATIVE
EDVAFGPENLGIEPKEIRRIVEESLKSVGMYDLRDRQPHLLSGGQKQRVAIAGIIAMR
PKCIIFDEATAMLDPSGRKEVMKTIKRLNKEENITVIHITHFMEEAVEADRVVVMEKG
KKILEGTPREVFSKIKMLKEIGLDVPCMTELSSLLIEEGINISSDILTVDEMVMELCQ
L"
misc_feature 127580..128410
/locus_tag="CDBI1_00565"
/note="cobalt transporter ATP-binding subunit;
Provisional; Region: PRK13633"
/db_xref="CDD:184193"
misc_feature 127595..128236
/locus_tag="CDBI1_00565"
/note="First domain of the ATP-binding cassette component
of cobalt transport system; Region:
ABC_cobalt_CbiO_domain1; cd03225"
/db_xref="CDD:213192"
misc_feature 127700..127723
/locus_tag="CDBI1_00565"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213192"
misc_feature order(127709..127714,127718..127726,127847..127849,
128078..128083,128180..128182)
/locus_tag="CDBI1_00565"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213192"
misc_feature 127838..127849
/locus_tag="CDBI1_00565"
/note="Q-loop/lid; other site"
/db_xref="CDD:213192"
misc_feature 128006..128035
/locus_tag="CDBI1_00565"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213192"
misc_feature 128066..128083
/locus_tag="CDBI1_00565"
/note="Walker B; other site"
/db_xref="CDD:213192"
misc_feature 128090..128101
/locus_tag="CDBI1_00565"
/note="D-loop; other site"
/db_xref="CDD:213192"
misc_feature 128168..128188
/locus_tag="CDBI1_00565"
/note="H-loop/switch region; other site"
/db_xref="CDD:213192"
gene 128401..129267
/gene="cbiO"
/locus_tag="CDBI1_00570"
/db_xref="GeneID:12215675"
CDS 128401..129267
/gene="cbiO"
/locus_tag="CDBI1_00570"
/note="'COG1122 ABC-type cobalt transport system, ATPase
component'"
/codon_start=1
/transl_table=11
/product="cobalt transporter ATP-binding subunit"
/protein_id="YP_006197283.1"
/db_xref="GI:384359431"
/db_xref="GeneID:12215675"
/translation="MSIIVKNLTHIYNEGMPFASKALDDISFEIKDRDFVGLIGHTGS
GKSTLIQHLNGLLKPSSGEIFINDFNITDKNLNLTEIRKRVGVVFQYPEYQLFEETID
KDIAFGPSNLGLEESEIHNRVKASMEAVGLDYEGFKDKSPFELSGGQKRRVAIAGVIA
MNPEVLILDEPTAGLDPGGRDEIFNLIKDLHEKKNMTIILSSHSMDDMAKLAKTLIVM
NHGSVEFMGTPREVFKSNASKLKDIGLDIPQVLELALKLREKGFDISEDILTLEEAKQ
EILKVVRGRGLC"
misc_feature 128401..129264
/gene="cbiO"
/locus_tag="CDBI1_00570"
/note="cobalt transporter ATP-binding subunit;
Provisional; Region: cbiO; PRK13637"
/db_xref="CDD:184197"
misc_feature 128413..129063
/gene="cbiO"
/locus_tag="CDBI1_00570"
/note="First domain of the ATP-binding cassette component
of cobalt transport system; Region:
ABC_cobalt_CbiO_domain1; cd03225"
/db_xref="CDD:213192"
misc_feature 128518..128541
/gene="cbiO"
/locus_tag="CDBI1_00570"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213192"
misc_feature order(128527..128532,128536..128544,128668..128670,
128905..128910,129007..129009)
/gene="cbiO"
/locus_tag="CDBI1_00570"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213192"
misc_feature 128659..128670
/gene="cbiO"
/locus_tag="CDBI1_00570"
/note="Q-loop/lid; other site"
/db_xref="CDD:213192"
misc_feature 128833..128862
/gene="cbiO"
/locus_tag="CDBI1_00570"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213192"
misc_feature 128893..128910
/gene="cbiO"
/locus_tag="CDBI1_00570"
/note="Walker B; other site"
/db_xref="CDD:213192"
misc_feature 128917..128928
/gene="cbiO"
/locus_tag="CDBI1_00570"
/note="D-loop; other site"
/db_xref="CDD:213192"
misc_feature 128995..129015
/gene="cbiO"
/locus_tag="CDBI1_00570"
/note="H-loop/switch region; other site"
/db_xref="CDD:213192"
gene 129261..130064
/locus_tag="CDBI1_00575"
/db_xref="GeneID:12215676"
CDS 129261..130064
/locus_tag="CDBI1_00575"
/note="'COG0619 ABC-type cobalt transport system, permease
component CbiQ and related transporters'"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_006197284.1"
/db_xref="GI:384359432"
/db_xref="GeneID:12215676"
/translation="MLKDITIGQYYPTSSAIHKLDPRIKLVATIVFMVSIFVVNKFWP
YIVVLLCLLAMIKLANIPVKYIVKGVKPLKWIILFTFLINIFFLPGDEIWSFGFLAIT
KQGLRQAIFMAIRLIFLVVGTSLLTLTTSPIELTDGIERLLNPFKKIGLPVHELAMMM
TIALRFIPTLLDETDKIMKAQMSRGADFESKNLINRAKNLVPLLVPLFVSAFRRADEL
AMAMEARCYRGGHNRTKMRESVISRRDYMACVFQVVYLGAIIATRFIAI"
misc_feature 129300..129968
/locus_tag="CDBI1_00575"
/note="Cobalt transport protein; Region: CbiQ; pfam02361"
/db_xref="CDD:145484"
gene 130096..130827
/locus_tag="CDBI1_00580"
/db_xref="GeneID:12215677"
CDS 130096..130827
/locus_tag="CDBI1_00580"
/note="COG0101 Pseudouridylate synthase"
/codon_start=1
/transl_table=11
/product="tRNA pseudouridine synthase ACD"
/protein_id="YP_006197285.1"
/db_xref="GI:384359433"
/db_xref="GeneID:12215677"
/translation="MRNIKIKIQYNGKNYCGWQKQPDSLGIQGTIERAIYDITKEETS
LIGSGRTDSGVHAIGQIANFKINSGISIESIPMALNAKLPKDISVIEACEVNDDFHSR
YSAKGKTYKYLVYNSKFRNPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMSSG
SSVKDTVRTIYDIDISKKDDLITFEISGNGFLYNMVRIIVGTLVDMGRGRINEPFLDI
IQSKTRSRCGHTAPAQGLFLKKVHY"
misc_feature 130096..130824
/locus_tag="CDBI1_00580"
/note="tRNA pseudouridine synthase A; Validated; Region:
truA; PRK00021"
/db_xref="CDD:178798"
misc_feature 130111..130824
/locus_tag="CDBI1_00580"
/note="Eukaryotic and bacterial pseudouridine synthases
similar to E. coli TruA; Region: PseudoU_synth_EcTruA;
cd02570"
/db_xref="CDD:211337"
misc_feature order(130120..130122,130333..130335,130342..130365)
/locus_tag="CDBI1_00580"
/note="dimerization interface 3.5A [polypeptide binding];
other site"
/db_xref="CDD:211337"
misc_feature order(130240..130251,130684..130686)
/locus_tag="CDBI1_00580"
/note="active site"
/db_xref="CDD:211337"
gene 130947..131378
/gene="rplM"
/locus_tag="CDBI1_00585"
/db_xref="GeneID:12215678"
CDS 130947..131378
/gene="rplM"
/locus_tag="CDBI1_00585"
/note="COG0102 Ribosomal protein L13"
/codon_start=1
/transl_table=11
/product="50S ribosomal protein L13"
/protein_id="YP_006197286.1"
/db_xref="GI:384359434"
/db_xref="GeneID:12215678"
/translation="MKSYIAKPADVQRKWYLVDAEGKTLGRLATEIATVLRGKHKPTF
TPHVDGGDFVVVVNAEKIVLSGKKLDQKYYRYHTGYVGGLKEISYRDMMDKKPEEVIS
HAVSGMLPKNKLRSRMMTRLRVFAGAEHTHAAQNPEVLNFK"
misc_feature 130989..131330
/gene="rplM"
/locus_tag="CDBI1_00585"
/note="Ribosomal protein L13. Protein L13, a large
ribosomal subunit protein, is one of five proteins
required for an early folding intermediate of 23S rRNA in
the assembly of the large subunit. L13 is situated on the
bottom of the large subunit, near the...; Region:
Ribosomal_L13; cd00392"
/db_xref="CDD:88313"
misc_feature order(131016..131018,131022..131027,131034..131036,
131043..131045,131055..131057,131139..131141,
131145..131147,131229..131234,131250..131258,
131262..131270,131274..131282,131286..131288,
131292..131294,131304..131306,131313..131318)
/gene="rplM"
/locus_tag="CDBI1_00585"
/note="23S rRNA interface [nucleotide binding]; other
site"
/db_xref="CDD:88313"
misc_feature 131232..131234
/gene="rplM"
/locus_tag="CDBI1_00585"
/note="L3 interface [polypeptide binding]; other site"
/db_xref="CDD:88313"
gene 131407..131799
/gene="rpsI"
/locus_tag="CDBI1_00590"
/db_xref="GeneID:12215679"
CDS 131407..131799
/gene="rpsI"
/locus_tag="CDBI1_00590"
/note="COG0103 Ribosomal protein S9"
/codon_start=1
/transl_table=11
/product="30S ribosomal protein S9"
/protein_id="YP_006197287.1"
/db_xref="GI:384359435"
/db_xref="GeneID:12215679"
/translation="MANVQYYGTGRRKSSVARVRLVAGEGNILVNGRALENYFNYETL
IRDVKQPLVLTGNENKYDVIVKVEGGGFTGQAGAIRHGISRALLKADLDLRPALKKEG
FLTRDARMKERKKYGLKAARRAPQFSKR"
misc_feature 131407..131796
/gene="rpsI"
/locus_tag="CDBI1_00590"
/note="30S ribosomal protein S9; Reviewed; Region: rpsI;
PRK00132"
/db_xref="CDD:178888"
gene 132258..133010
/locus_tag="CDBI1_00595"
/db_xref="GeneID:12215760"
CDS 132258..133010
/locus_tag="CDBI1_00595"
/note="COG0860 N-acetylmuramoyl-L-alanine amidase"
/codon_start=1
/transl_table=11
/product="germination-specific N-acetylmuramoyl-L-alanine
amidase"
/protein_id="YP_006197288.1"
/db_xref="GI:384359436"
/db_xref="GeneID:12215760"
/translation="MEYYSVFISIHIQGDVVRKYIKHIIFSFAMICLVVVSIFEIKNI
SEDVIKYMPVTNKTIILDAGHGGIDPGALNKDKSTSEKDINLAITLKLRELIESSGGL
VILTREDDSSLYKEENNKTTRQKYNENLKNRKEIISNSNANMFVSIHLNAFEQSKYYG
AQTFYPKDKQDSKELSKCIQEELKRVVDKTNNREVKPRDDIYLLKENNIPSVLIECGF
LSNEKECKLLTDETYQEKIAWAIYIGIQKYLS"
misc_feature 132375..133007
/locus_tag="CDBI1_00595"
/note="N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane]; Region: AmiC; COG0860"
/db_xref="CDD:31201"
misc_feature 132429..132995
/locus_tag="CDBI1_00595"
/note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
(also known as peptidoglycan aminohydrolase, NAMLA
amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
3.5.1.28) is an autolysin that hydrolyzes the amide bond
between N-acetylmuramoyl and L-amino...; Region:
MurNAc-LAA; cd02696"
/db_xref="CDD:119407"
misc_feature order(132450..132452,132498..132500,132702..132704,
132900..132902)
/locus_tag="CDBI1_00595"
/note="active site"
/db_xref="CDD:119407"
misc_feature order(132450..132452,132498..132500,132702..132704)
/locus_tag="CDBI1_00595"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:119407"
gene 133293..134805
/locus_tag="CDBI1_r18392"
/db_xref="GeneID:12215761"
rRNA 133293..134805
/locus_tag="CDBI1_r18392"
/product="16S ribosomal RNA"
/db_xref="GeneID:12215761"
gene 134852..134927
/locus_tag="CDBI1_t18306"
/db_xref="GeneID:12215762"
tRNA 134852..134927
/locus_tag="CDBI1_t18306"
/product="tRNA-Ala"
/db_xref="GeneID:12215762"
misc_feature 135227..138048
/note="potential RNA of insufficient length (23S ribosomal
RNA)"
gene 138230..138346
/locus_tag="CDBI1_r18370"
/db_xref="GeneID:12215763"
rRNA 138230..138346
/locus_tag="CDBI1_r18370"
/product="5S ribosomal RNA"
/db_xref="GeneID:12215763"
gene 138353..138427
/locus_tag="CDBI1_t18308"
/db_xref="GeneID:12215764"
tRNA 138353..138427
/locus_tag="CDBI1_t18308"
/product="tRNA-Asn"
/db_xref="GeneID:12215764"
misc_feature 138419..138700
/note="potential protein location (hypothetical protein
CDBI1_00600 [Clostridium difficile BI1]) that overlaps RNA
(tRNA-D)"
gene 138432..138506
/locus_tag="CDBI1_t18310"
/db_xref="GeneID:12215765"
tRNA 138432..138506
/locus_tag="CDBI1_t18310"
/product="tRNA-Glu"
/db_xref="GeneID:12215765"
gene 138512..138587
/locus_tag="CDBI1_t18312"
/db_xref="GeneID:12215766"
tRNA 138512..138587
/locus_tag="CDBI1_t18312"
/product="tRNA-Val"
/db_xref="GeneID:12215766"
gene 138593..138669
/locus_tag="CDBI1_t18314"
/db_xref="GeneID:12215767"
tRNA 138593..138669
/locus_tag="CDBI1_t18314"
/product="tRNA-Asp"
/db_xref="GeneID:12215767"
gene 138680..138754
/locus_tag="CDBI1_t18316"
/db_xref="GeneID:12215768"
tRNA 138680..138754
/locus_tag="CDBI1_t18316"
/product="tRNA-Thr"
/db_xref="GeneID:12215768"
gene 138870..140382
/locus_tag="CDBI1_r18394"
/db_xref="GeneID:12215769"
rRNA 138870..140382
/locus_tag="CDBI1_r18394"
/product="16S ribosomal RNA"
/db_xref="GeneID:12215769"
gene 140429..140504
/locus_tag="CDBI1_t18318"
/db_xref="GeneID:12215770"
tRNA 140429..140504
/locus_tag="CDBI1_t18318"
/product="tRNA-Ala"
/db_xref="GeneID:12215770"
misc_feature 140804..143625
/note="potential RNA of insufficient length (23S ribosomal
RNA)"
gene 143802..143918
/locus_tag="CDBI1_r18372"
/db_xref="GeneID:12215771"
rRNA 143802..143918
/locus_tag="CDBI1_r18372"
/product="5S ribosomal RNA"
/db_xref="GeneID:12215771"
gene complement(144132..145316)
/locus_tag="CDBI1_00605"
/db_xref="GeneID:12215772"
CDS complement(144132..145316)
/locus_tag="CDBI1_00605"
/note="COG0436 Aspartate/tyrosine/aromatic
aminotransferase"
/codon_start=1
/transl_table=11
/product="aspartate aminotransferase"
/protein_id="YP_006197289.1"
/db_xref="GI:384359437"
/db_xref="GeneID:12215772"
/translation="MLSKRLNFITPSYTIGISSKVKEMESNGVKVINLSIGEPDFNVP
NNAKSYGIDSLNKDYTKYDLVPGLKILREEICKKLIEENNCNYSIDEIVVSSGAKNSI
TNTLLALTDEGDEVLLPKPYWVSYPEMIKLVNAVPVFIDTKKENGFKLTKEELEKSIT
DKTKILVINNPSNPTGSVYTKDELIEIVDVCIQNKIYILADEIYEKICYTGEFTSIAS
LSEEAKDITITINGFSKSAAMTGLRLGYTASNKTIAKAMSSIQGHLISHPSLTAQYIA
YGALKDCSIDIDNMVKTYKSRRDLIKSKLDSIDNVGYVNPNGAFYIFIDLSKVSEKFE
YKDSFSIEFCNQFLEEYNVAVVPGIAFGMDKYIRISYACSENTFLSGLDKLKEFVYKI
MA"
misc_feature complement(144138..145316)
/locus_tag="CDBI1_00605"
/note="aspartate aminotransferase; Provisional; Region:
PRK05764"
/db_xref="CDD:180244"
misc_feature complement(144156..145223)
/locus_tag="CDBI1_00605"
/note="Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal phosphate
combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine...; Region: AAT_like;
cd00609"
/db_xref="CDD:99734"
misc_feature complement(order(144588..144590,144612..144617,
144621..144623,144705..144707,144798..144800,
144948..144950,145020..145028))
/locus_tag="CDBI1_00605"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99734"
misc_feature complement(order(144492..144494,144501..144503,
144588..144596,144726..144728,144918..144920,
145017..145019))
/locus_tag="CDBI1_00605"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:99734"
misc_feature complement(144612..144614)
/locus_tag="CDBI1_00605"
/note="catalytic residue [active]"
/db_xref="CDD:99734"
gene 145689..148040
/locus_tag="CDBI1_00610"
/db_xref="GeneID:12215773"
CDS 145689..148040
/locus_tag="CDBI1_00610"
/EC_number="1.17.4.2"
/note="COG1328 Oxygen-sensitive
ribonucleoside-triphosphate reductase"
/codon_start=1
/transl_table=11
/product="anaerobic ribonucleoside triphosphate reductase"
/protein_id="YP_006197290.1"
/db_xref="GI:384359438"
/db_xref="GeneID:12215773"
/translation="MVEFVKKRDGRVIPFNEDRITRAIFLAATNVAEREGIVPDYKLS
EQLTQEVIKFLNHKYSESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNS
KTRLMKAIEEITFEDAEDADIKRENANINGNTAMGTMLQYGSTVSKEFCKTHILKPEH
SFAHDNGDIHIHDMDFLNMGTLTCCQIDVKKLFNGGFSTGHGFLREPQDIISYGALAA
IAIQSNQNDQHGGQSIPFFDYGLAEGVYKTFKKFYIGNLAKALKLFKGIENNDVIKNI
VYNTEKETNQKVGLKRDELYLNLEKEKLIQTFDIDDELVNKMQNFAFEESYRETDKKT
YQSMEAFIHNLNTMHSRAGAQVPFSSVNFGTDTSEEGRMVTKNLLLSQERGLGNGETP
IFPILIFKVKEGINLNPEDPNYDLFKLSCRVSAKRLFPNFSFLDAPFNAKYYKKGEPD
TEATYMGCRTRVLSNVCGSETVSGRGNISFTTVNLPRLGIKHGIINNEKANLDGFFEE
LDEKINLIIEQLLERFEVQGNKKMKNFPFLMGQGVWKGSDDLVPEDTLKEVIKQGTLT
IGFIGLAECLIALIGKHHGESKEAQELGLKIVSHMRHKMDEATDKYKLNFSLMGTPAE
GLSGRFTKIDKKVYGEIKGITDKEYYTNSFHVPVYYNISAYDKIEIEAPYHELTNAGH
ITYVELDGDPSDNLEAFETVIKAMKDLGIGYGSINHPVDRDPICGFSGVITSNICPVC
GRNEDESDIKFERIRRITGYLVGTVDRFNNAKKAEVRDRVKHR"
misc_feature 145689..148037
/locus_tag="CDBI1_00610"
/note="anaerobic ribonucleoside triphosphate reductase;
Provisional; Region: PRK07111"
/db_xref="CDD:180846"
misc_feature 145698..145982
/locus_tag="CDBI1_00610"
/note="ATP cone domain; Region: ATP-cone; pfam03477"
/db_xref="CDD:202657"
misc_feature 146064..147977
/locus_tag="CDBI1_00610"
/note="Class III ribonucleotide reductase; Region:
RNR_III; cd01675"
/db_xref="CDD:153084"
misc_feature order(146196..146198,146202..146207,146298..146312,
146322..146324,146331..146336,146343..146345,
146439..146441,147555..147566,147573..147575)
/locus_tag="CDBI1_00610"
/note="effector binding site; other site"
/db_xref="CDD:153084"
misc_feature order(146238..146240,146379..146381,147057..147062,
147123..147125,147549..147551,147558..147560)
/locus_tag="CDBI1_00610"
/note="active site"
/db_xref="CDD:153084"
misc_feature order(147855..147857,147864..147866,147897..147899,
147906..147908)
/locus_tag="CDBI1_00610"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:153084"
misc_feature 147954..147968
/locus_tag="CDBI1_00610"
/note="glycine loop; other site"
/db_xref="CDD:153084"
gene 148062..148601
/locus_tag="CDBI1_00615"
/db_xref="GeneID:12215774"
CDS 148062..148601
/locus_tag="CDBI1_00615"
/note="COG0602 Organic radical activating enzymes"
/codon_start=1
/transl_table=11
/product="anaerobic ribonucleoside-triphosphate reductase
activating protein"
/protein_id="YP_006197291.1"
/db_xref="GI:384359439"
/db_xref="GeneID:12215774"
/translation="MKIRMSSTISYDSIVDGPGLRMVIWTQGCIHNCKECHNPQTHDL
CGGFYMDTEEIINKVKSLKLQKGITLSGGEPFLQPEPLEEIAREAKINGLDVWSYTGF
TFEQLLDKKNRAYFKNLNLLKQIDILVDGKFIAEKKDISLKFRGSSNQRIIDVQKSLK
YKKVFLVEQYMKDDLSIAE"
misc_feature 148104..148520
/locus_tag="CDBI1_00615"
/note="4Fe-4S single cluster domain; Region: Fer4_12;
pfam13353"
/db_xref="CDD:205533"
misc_feature 148137..>148562
/locus_tag="CDBI1_00615"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(148146..148148,148152..148154,148158..148160,
148164..148172,148272..148274,148278..148283,
148353..148361,148443..148445)
/locus_tag="CDBI1_00615"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 149379..150891
/locus_tag="CDBI1_r18396"
/db_xref="GeneID:12215775"
rRNA 149379..150891
/locus_tag="CDBI1_r18396"
/product="16S ribosomal RNA"
/db_xref="GeneID:12215775"
gene 150938..151013
/locus_tag="CDBI1_t18320"
/db_xref="GeneID:12215776"
tRNA 150938..151013
/locus_tag="CDBI1_t18320"
/product="tRNA-Ala"
/db_xref="GeneID:12215776"
misc_feature 151313..154134
/note="potential RNA of insufficient length (23S ribosomal
RNA)"
gene 154385..154501
/locus_tag="CDBI1_r18374"
/db_xref="GeneID:12215777"
rRNA 154385..154501
/locus_tag="CDBI1_r18374"
/product="5S ribosomal RNA"
/db_xref="GeneID:12215777"
gene 154507..154595
/locus_tag="CDBI1_t18322"
/db_xref="GeneID:12215778"
tRNA 154507..154595
/locus_tag="CDBI1_t18322"
/product="tRNA-Leu"
/db_xref="GeneID:12215778"
gene 154607..154683
/locus_tag="CDBI1_t18324"
/db_xref="GeneID:12215779"
tRNA 154607..154683
/locus_tag="CDBI1_t18324"
/product="tRNA-Met"
/db_xref="GeneID:12215779"
gene 154792..156304
/locus_tag="CDBI1_r18398"
/db_xref="GeneID:12215780"
rRNA 154792..156304
/locus_tag="CDBI1_r18398"
/product="16S ribosomal RNA"
/db_xref="GeneID:12215780"
gene 156351..156426
/locus_tag="CDBI1_t18326"
/db_xref="GeneID:12215781"
tRNA 156351..156426
/locus_tag="CDBI1_t18326"
/product="tRNA-Ala"
/db_xref="GeneID:12215781"
misc_feature 156828..159649
/note="potential RNA of insufficient length (23S ribosomal
RNA)"
gene 159826..159942
/locus_tag="CDBI1_r18376"
/db_xref="GeneID:12215782"
rRNA 159826..159942
/locus_tag="CDBI1_r18376"
/product="5S ribosomal RNA"
/db_xref="GeneID:12215782"
gene 159950..160024
/locus_tag="CDBI1_t18328"
/db_xref="GeneID:12215783"
tRNA 159950..160024
/locus_tag="CDBI1_t18328"
/product="tRNA-Asn"
/db_xref="GeneID:12215783"
gene 160030..160115
/locus_tag="CDBI1_t18330"
/db_xref="GeneID:12215784"
tRNA 160030..160115
/locus_tag="CDBI1_t18330"
/product="tRNA-Leu"
/db_xref="GeneID:12215784"
gene 160131..160206
/locus_tag="CDBI1_t18332"
/db_xref="GeneID:12215785"
tRNA 160131..160206
/locus_tag="CDBI1_t18332"
/product="tRNA-Met"
/db_xref="GeneID:12215785"
gene 160214..160288
/locus_tag="CDBI1_t18334"
/db_xref="GeneID:12215786"
tRNA 160214..160288
/locus_tag="CDBI1_t18334"
/product="tRNA-Glu"
/db_xref="GeneID:12215786"
gene 160303..160376
/locus_tag="CDBI1_t18336"
/db_xref="GeneID:12215787"
tRNA 160303..160376
/locus_tag="CDBI1_t18336"
/product="tRNA-Gly"
/db_xref="GeneID:12215787"
gene 160382..160457
/locus_tag="CDBI1_t18338"
/db_xref="GeneID:12215788"
tRNA 160382..160457
/locus_tag="CDBI1_t18338"
/product="tRNA-Val"
/db_xref="GeneID:12215788"
gene 160463..160539
/locus_tag="CDBI1_t18340"
/db_xref="GeneID:12215789"
tRNA 160463..160539
/locus_tag="CDBI1_t18340"
/product="tRNA-Asp"
/db_xref="GeneID:12215789"
gene 160550..160624
/locus_tag="CDBI1_t18342"
/db_xref="GeneID:12215790"
tRNA 160550..160624
/locus_tag="CDBI1_t18342"
/product="tRNA-Gly"
/db_xref="GeneID:12215790"
gene 160634..160707
/locus_tag="CDBI1_t18344"
/db_xref="GeneID:12215791"
tRNA 160634..160707
/locus_tag="CDBI1_t18344"
/product="tRNA-Arg"
/db_xref="GeneID:12215791"
gene 161683..162522
/locus_tag="CDBI1_00620"
/db_xref="GeneID:12215792"
CDS 161683..162522
/locus_tag="CDBI1_00620"
/note="COG1624 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197292.1"
/db_xref="GI:384359440"
/db_xref="GeneID:12215792"
/translation="MLDINSFLNGFFNIILRMSIYDLIDISIVAYIFYKIFMFIKDTR
AEQVFKGIIFLLLATQLSNTFKLHTVYWISLKALDYGVIAALIIFQPEFRAGLEHIGR
AKFNLFGKNVNTSEETLNRNIEEIVEALYSLSRQKIGALIIMERETRISDIINTGTII
DAEISRQLLINIFIPNTPLHDGAVVIRDSKVKAAACFLPLTESKDLSKDLGTRHRAGI
GVSEVSDCITLIVSEETGGVSIAKAGKLYRDISRERMMNILRSNLKTNTETRSFFKGG
IFK"
misc_feature 161746..162444
/locus_tag="CDBI1_00620"
/note="Uncharacterized conserved protein [Function
unknown]; Region: COG1624"
/db_xref="CDD:31811"
misc_feature 162058..162423
/locus_tag="CDBI1_00620"
/note="DisA bacterial checkpoint controller
nucleotide-binding; Region: DisA_N; pfam02457"
/db_xref="CDD:190315"
gene 162519..163700
/locus_tag="CDBI1_00625"
/db_xref="GeneID:12215793"
CDS 162519..163700
/locus_tag="CDBI1_00625"
/note="COG4856 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197293.1"
/db_xref="GI:384359441"
/db_xref="GeneID:12215793"
/translation="MINRLKNNTKIKIISFLSAIALWMYVMAVVDPEETKGFEDIPVS
ISNMSDLKDKNLVIYPDEKLTADVYIKGSLSKVQSVKKEDIHVYGTIEDPIQGQKEVY
LKANIPQGVTLEFKHDVLVVNLEKNIKEKRDIKVEVSGNSKRNINKIELSKEFVDVSG
PRTLVKEVKSVRANLDVGNETDDFSKKLQLIPLNSDGTKVEGVTLSSSFVTAKIELLK
EKIVPIRVSLNDNKDNDVLKNYKLSKEQVTIKGKKEDIDKISYIKTKPIDLADLANGE
EKEVSLEIPEGITLEDSSITIKLNDTKQLSAEFLYNAGDIELRNIPTNIDNPNVISDV
DIKVVVESTEDLSKLNKKDISLYIDLSQGPEEDSKYKIKYETTYQFKKINIEPNIVEV
E"
misc_feature 162519..163643
/locus_tag="CDBI1_00625"
/note="Uncharacterized protein conserved in bacteria
[Function unknown]; Region: COG4856"
/db_xref="CDD:34465"
misc_feature <163245..163415
/locus_tag="CDBI1_00625"
/note="YbbR-like protein; Region: YbbR; pfam07949"
/db_xref="CDD:203816"
gene 164004..164906
/locus_tag="CDBI1_00630"
/db_xref="GeneID:12215794"
CDS 164004..164906
/locus_tag="CDBI1_00630"
/EC_number="2.3.1.19"
/note="COG0280 Phosphotransacetylase"
/codon_start=1
/transl_table=11
/product="phosphate butyryltransferase"
/protein_id="YP_006197294.1"
/db_xref="GI:384359442"
/db_xref="GeneID:12215794"
/translation="MRSFEEVIKFAKERGPKTISVACCQDKEVLMAVEMARKEKIANA
ILVGDIEKTKEIAKSIDMDIENYELIDIKDLAEASLKSVELVSQGKADMVMKGLVDTS
IILKAVLNKEVGLRTGNVLSHVAVFDVEGYDRLFFVTDAAMNLAPDTNTKKQIIENAC
TVAHSLDISEPKVAAICAKEKVNPKMKDTVEAKELEEMYERGEIKGCMVGGPFAIDNA
VSLEAAKHKGINHPVAGRADILLAPDIEGGNILYKALVFFSKSKNAGVIVGAKAPIIL
TSRADSEETKLNSIALGVLMAAKA"
misc_feature 164004..164903
/locus_tag="CDBI1_00630"
/note="phosphate butyryltransferase; Validated; Region:
PRK05805"
/db_xref="CDD:180267"
misc_feature 164013..164900
/locus_tag="CDBI1_00630"
/note="Phosphotransacetylase [Energy production and
conversion]; Region: Pta; COG0280"
/db_xref="CDD:30628"
gene 164928..166007
/locus_tag="CDBI1_00635"
/db_xref="GeneID:12215795"
CDS 164928..166007
/locus_tag="CDBI1_00635"
/EC_number="2.7.2.7"
/note="COG3426 Butyrate kinase"
/codon_start=1
/transl_table=11
/product="butyrate kinase"
/protein_id="YP_006197295.1"
/db_xref="GI:384359443"
/db_xref="GeneID:12215795"
/translation="MSKIFKILTINPGSTSTKIAVFDNEDLVFEKTLRHSSEEIGKYE
KVSDQFEFRKQVIEEALKEGGVKTSELDAVVGRGGLLKPIKGGTYSVSAAMIEDLKVG
VLGEHASNLGGIIAKQIGEEVNVPSYIVDPVVVDELEDVARISGMPEISRASVVHALN
QKAIARRYAREINKKYEDINLIVAHMGGGVSVGAHKNGKIVDVANALDGEGPFSPERS
GGLPVGALVKMCFSGKYTQDEIKKKIKGNGGLVAYLNTNDAREVEERIEAGDEKAKLV
YEAMAYQISKEIGASAAVLKGDVKAILLTGGIAYSKMFTEMIADRVKFIADVKVYPGE
DEMIALAQGGLRVLTGEEEAQVYDN"
misc_feature 164949..165545
/locus_tag="CDBI1_00635"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cd00012"
/db_xref="CDD:212657"
misc_feature order(164958..164969,164973..164975,164979..164981,
165393..165395,165480..165491)
/locus_tag="CDBI1_00635"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
misc_feature <165417..165851
/locus_tag="CDBI1_00635"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:214262"
gene 165997..166674
/locus_tag="CDBI1_00640"
/db_xref="GeneID:12215796"
CDS 165997..166674
/locus_tag="CDBI1_00640"
/codon_start=1
/transl_table=11
/product="ATP/GTP-binding protein"
/protein_id="YP_006197296.1"
/db_xref="GI:384359444"
/db_xref="GeneID:12215796"
/translation="MITNDKRIRIITGHYGSGKSEFAMNYVVKLRDMVSGKVAIADLD
VVNVYFRTREKKELMKSLGIQPIDSSINAPTLDLPAVSAEVMSPMVDHSYNSVIDLGG
DNVGARVIGRFSHLLKEGDYDMLFVINANREKTQTSEEVIQYIKEIEKSSKLKVTGLI
NNTHLIRFTTIDDVLRGQKVAKEVSEKCNIPIRYVACLENLVEQLPKDLEGEIFPIKL
YMREDWM"
gene 166717..166932
/locus_tag="CDBI1_00645"
/db_xref="GeneID:12215797"
CDS 166717..166932
/locus_tag="CDBI1_00645"
/note="COG1146 Ferredoxin"
/codon_start=1
/transl_table=11
/product="ferredoxin"
/protein_id="YP_006197297.1"
/db_xref="GI:384359445"
/db_xref="GeneID:12215797"
/translation="MAKGKVSFNQERCKGCGLCVEACPVKIIQLDSNVINKKGYNPAT
VFEMEKCIGCASCATMCPDVVITVERD"
misc_feature <166750..>166902
/locus_tag="CDBI1_00645"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
misc_feature 166753..166902
/locus_tag="CDBI1_00645"
/note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
/db_xref="CDD:205099"
gene 166961..168040
/locus_tag="CDBI1_00650"
/db_xref="GeneID:12215798"
CDS 166961..168040
/locus_tag="CDBI1_00650"
/EC_number="1.2.7.7"
/note="'COG0674 Pyruvate:ferredoxin oxidoreductase and
related 2-oxoacid:ferredoxin oxidoreductases, alpha
subunit'"
/codon_start=1
/transl_table=11
/product="2-ketoisovalerate ferredoxin reductase"
/protein_id="YP_006197298.1"
/db_xref="GI:384359446"
/db_xref="GeneID:12215798"
/translation="MAKILMKGNEAFGKAAIEAGCKYFFGYPITPQSELPEYLSRELP
KIGGAFVQAESEVSAINMVYGGAGAGARVMTSSSSPGVALKQEGITYAVGAEVPCVVL
NVMRGGPGLGSIQPSQADYFMSTRGGGNGDYRTPVFAPATVQEAVDMIMEAFDVADYY
RSPVMVVADGMIGQMMEPVEFRAPEKKRELPPKDWATVGTKGKRKPNVINSLYLEPEV
LEDHCWHLQEKFDAMEKNEVQYEMYKTEDAEFVFAAYGTTSRVVKSAIDILREEGIKA
GLIRPKVLWPFPFEAFNQIPNARNILTVEMSMGQMVEDVKMAVEGKLPVYFHGRPGGM
TPTPAEIVEKAKKIIAGELVAGGAR"
misc_feature 166961..168016
/locus_tag="CDBI1_00650"
/note="2-ketoisovalerate ferredoxin reductase; Validated;
Region: PRK07119"
/db_xref="CDD:180853"
misc_feature 166982..167470
/locus_tag="CDBI1_00650"
/note="Pyrimidine (PYR) binding domain of pyruvate
ferredoxin oxidoreductase (PFOR), indolepyruvate
ferredoxin oxidoreductase alpha subunit (IOR-alpha), and
related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like;
cd07034"
/db_xref="CDD:132917"
misc_feature order(167027..167032,167048..167050,167060..167062,
167069..167071,167111..167122,167141..167146,
167150..167158,167165..167167,167171..167173,
167222..167224,167231..167233,167243..167245,
167282..167287,167336..167341)
/locus_tag="CDBI1_00650"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature order(167027..167032,167039..167044,167048..167050,
167066..167071,167111..167122,167141..167146,
167150..167158,167165..167167,167171..167173,
167222..167224,167231..167233)
/locus_tag="CDBI1_00650"
/note="PYR/PP interface [polypeptide binding]; other site"
/db_xref="CDD:132917"
misc_feature order(167042..167044,167126..167128)
/locus_tag="CDBI1_00650"
/note="TPP binding site [chemical binding]; other site"
/db_xref="CDD:132917"
misc_feature order(167048..167050,167276..167278)
/locus_tag="CDBI1_00650"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:132917"
misc_feature 167720..>167875
/locus_tag="CDBI1_00650"
/note="Transketolase, C-terminal domain; Region:
Transketolase_C; pfam02780"
/db_xref="CDD:202391"
gene 168040..168792
/locus_tag="CDBI1_00655"
/db_xref="GeneID:12215799"
CDS 168040..168792
/locus_tag="CDBI1_00655"
/note="'COG1013 Pyruvate:ferredoxin oxidoreductase and
related 2-oxoacid:ferredoxin oxidoreductases, beta
subunit'"
/codon_start=1
/transl_table=11
/product="subunit of oxidoreductase"
/protein_id="YP_006197299.1"
/db_xref="GI:384359447"
/db_xref="GeneID:12215799"
/translation="MAVVFKKTEGLQDTQTHYCPGCTHGIIHRLVGEVLEELGVLGDA
VGVVPVGCSVLGYKYFNCDTQEAAHGRAPAAATGIKRVHPENTVFTYQGDGDLASIGT
AEIVHAAARGEKITTIFVNNTTYGMTGGQMAPTTLVGQRATTAQSGRNAETQGYPIRV
SEMLATLTGAVFVERVAVDTPAHVRQAKKAIKKAFQVQQAGLGFGIVEVLSTCPTNWG
LAPNDALQWLRDNMIPYYPLGNFKNVEVEEVK"
misc_feature 168049..168783
/locus_tag="CDBI1_00655"
/note="Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy
production and conversion]; Region: PorB; COG1013"
/db_xref="CDD:31217"
misc_feature 168091..168687
/locus_tag="CDBI1_00655"
/note="Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and...; Region:
TPP_enzymes; cl01629"
/db_xref="CDD:207466"
misc_feature order(168244..168246,168316..168327,168403..168405,
168409..168411)
/locus_tag="CDBI1_00655"
/note="TPP-binding site [chemical binding]; other site"
/db_xref="CDD:48162"
gene 168793..169350
/locus_tag="CDBI1_00660"
/db_xref="GeneID:12215800"
CDS 168793..169350
/locus_tag="CDBI1_00660"
/note="'COG1014 Pyruvate:ferredoxin oxidoreductase and
related 2-oxoacid:ferredoxin oxidoreductases, gamma
subunit'"
/codon_start=1
/transl_table=11
/product="subunit of oxidoreductase"
/protein_id="YP_006197300.1"
/db_xref="GI:384359448"
/db_xref="GeneID:12215800"
/translation="MSTARVICAGFGGQGVMSMGQLLTYAGMLEGKEVSWLPSYGPEM
RGGTANCAVTVSNEPVGSPLITDDATAAILLNIPAFEKFKDDVIPGGKIIVNSSLIKE
KVDRTDVDVYYIPANELAAELGNDKVANMIMLGAYLKVSDTVDIESVLEAFKKVFGPR
KEKFVPLNREALQKGMDATCSKATN"
misc_feature 168817..169323
/locus_tag="CDBI1_00660"
/note="2-oxoglutarate ferredoxin oxidoreductase subunit
gamma; Validated; Region: PRK08537"
/db_xref="CDD:181462"
misc_feature 168826..169317
/locus_tag="CDBI1_00660"
/note="Pyruvate ferredoxin/flavodoxin oxidoreductase;
Region: POR; pfam01558"
/db_xref="CDD:201860"
gene 169520..170866
/locus_tag="CDBI1_00665"
/db_xref="GeneID:12215801"
CDS 169520..170866
/locus_tag="CDBI1_00665"
/note="COG1109 Phosphomannomutase"
/codon_start=1
/transl_table=11
/product="phosphoglucosamine mutase"
/protein_id="YP_006197301.1"
/db_xref="GI:384359449"
/db_xref="GeneID:12215801"
/translation="MRKYFGTDGVRGVANTELTCDLAYKLGRAGGFVLAQGDHRVKVV
VGKDTRISGDMLEASLIAGLMSVGCDVITVGIIPTPAVAYLTRKYGADCGVVISASHN
PVEYNGIKFFNKNGYKLDDEIELKIEEYIDDIDKIDCLPIGENVGRKLHEHCAQRDYV
DYLKSIISTDFKGLKVVLDCANGASYKVAPIVFDELGASVISINSSPDGNNINYKCGS
THPEQLQRAVLEHNADLGLAYDGDADRLIAVNEKGQIVDGDHIMILSALNLKKNNKLA
QDTLVVTVMSNIGLTIAAKENGINLSTTAVGDRYVLEDMVKNGYNLGGEQSGHMIFLD
YNTTGDGVLSSLILANIILQEKKPLSEIASIMSQYPQVLVNATIKNENKNKYMEYPEI
KTEIERIESILNGNGRVLIRPSGTEPLVRVMLEGKEEGQIKELATNLANLIQEKLS"
misc_feature 169526..170863
/locus_tag="CDBI1_00665"
/note="phosphoglucosamine mutase; Provisional; Region:
glmM; PRK14316"
/db_xref="CDD:184616"
misc_feature 169529..170839
/locus_tag="CDBI1_00665"
/note="GlmM is a bacterial phosphoglucosamine mutase
(PNGM) that belongs to the alpha-D-phosphohexomutase
superfamily. It is required for the interconversion of
glucosamine-6-phosphate and glucosamine-1-phosphate in the
biosynthetic pathway of...; Region: GlmM; cd05802"
/db_xref="CDD:100095"
misc_feature order(169535..169537,169541..169543,169550..169552,
169817..169825,169847..169849,170237..170239,
170243..170245,170249..170254,170372..170374,
170435..170443,170492..170494,170498..170500,
170504..170506,170753..170755,170759..170767,
170780..170782)
/locus_tag="CDBI1_00665"
/note="active site"
/db_xref="CDD:100095"
misc_feature order(169541..169543,169817..169819,170252..170254,
170372..170374,170435..170437,170441..170443,
170492..170494,170498..170500,170504..170506,
170753..170755,170759..170767,170780..170782)
/locus_tag="CDBI1_00665"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:100095"
misc_feature order(169817..169819,170237..170239,170243..170245,
170249..170251)
/locus_tag="CDBI1_00665"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:100095"
gene 171133..172965
/locus_tag="CDBI1_00670"
/db_xref="GeneID:12215802"
CDS 171133..172965
/locus_tag="CDBI1_00670"
/note="'COG0449 Glucosamine 6-phosphate synthetase,
contains amidotransferase and phosphosugar isomerase
domains'"
/codon_start=1
/transl_table=11
/product="glucosamine--fructose-6-phosphate
aminotransferase, isomerizing"
/protein_id="YP_006197302.1"
/db_xref="GI:384359450"
/db_xref="GeneID:12215802"
/translation="MCGIVGYLGSRKAAEVIVEGLSKLEYRGYDSAGVAVNSSNEEEL
NIRKFKGRLSVLAEDLEKNPIDGNLGIGHTRWATHGEPSDVNSHPHFNQAKTIAVVHN
GIIENYMEIKEELISEGVKFESQTDTEVIAHLVDKYYEGNLLDAVYKTISKLRGAYAL
GVICKEHGNELVAVRKDSPLVVGVGEGENFIASDIPALLKYTRDVYFLENGEVVHLKD
ENVTVYDSNRNLVEKEVFHVTWDVEAASKGGYDYFMSKEIHEQPTGVRETLERRLDDN
GNIILDSINISKEDLEKINKVYIVACGTAYNAGLLGKYAIEKFVNIPVITDIASEFRY
SDPFVDENSLVILVSQSGETADTLAVLRDSKAKGARILSITNVVGSSIARESDDVFYT
WAGPEVAVASTKAYTTQITSLYMIALDFAIKKGTITREFYDSMISKMKEIPSKIQEIL
DNEEYIKEVAKTVVSSEHAFYLGRGIDYSLAMEGSLKLKEISYIHAEAFAAGELKHGT
IALIEKGTPVIAIATQEKLFEKMVSNMEEVRARGAYVVAIAQSHNKDVEKAADKIIYI
PNSDDILSPILAVVPMQLLAYHVSVLRGCDVDKPRNLAKSVTVE"
misc_feature 171133..172962
/locus_tag="CDBI1_00670"
/note="glucosamine--fructose-6-phosphate aminotransferase;
Reviewed; Region: PRK00331"
/db_xref="CDD:178980"
misc_feature 171136..171780
/locus_tag="CDBI1_00670"
/note="Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the N-terminus
of glucosamine-6P synthase (GlmS, or GFAT in humans). The
glutaminase domain catalyzes amide nitrogen transfer from
glutamine to the appropriate substrate. In...; Region:
GFAT; cd00714"
/db_xref="CDD:48478"
misc_feature order(171136..171138,171211..171213,171355..171360,
171364..171369,171394..171396,171436..171441,
171511..171516)
/locus_tag="CDBI1_00670"
/note="glutaminase active site [active]"
/db_xref="CDD:48478"
misc_feature 172018..172395
/locus_tag="CDBI1_00670"
/note="SIS (Sugar ISomerase) domain repeat 1 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_1; cd05008"
/db_xref="CDD:88405"
misc_feature order(172036..172041,172069..172074,172081..172086,
172105..172107,172111..172113,172123..172125,
172132..172134,172198..172200)
/locus_tag="CDBI1_00670"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88405"
misc_feature order(172042..172047,172177..172185)
/locus_tag="CDBI1_00670"
/note="active site"
/db_xref="CDD:88405"
misc_feature 172492..172956
/locus_tag="CDBI1_00670"
/note="SIS (Sugar ISomerase) domain repeat 2 found in
Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and phosphosugar
binding proteins. GlmS contains a N-terminal...; Region:
SIS_GlmS_GlmD_2; cd05009"
/db_xref="CDD:88406"
misc_feature order(172555..172557,172597..172599,172609..172611,
172615..172617,172621..172623,172627..172629,
172639..172641,172645..172653,172657..172668,
172717..172722,172732..172734,172738..172743,
172933..172938,172951..172953)
/locus_tag="CDBI1_00670"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:88406"
misc_feature order(172591..172593,172600..172602)
/locus_tag="CDBI1_00670"
/note="active site"
/db_xref="CDD:88406"
gene 173418..174713
/locus_tag="CDBI1_00675"
/db_xref="GeneID:12215803"
CDS 173418..174713
/locus_tag="CDBI1_00675"
/note="COG2897 Rhodanese-related sulfurtransferase"
/codon_start=1
/transl_table=11
/product="thiosulfate sulfurtransferase"
/protein_id="YP_006197303.1"
/db_xref="GI:384359451"
/db_xref="GeneID:12215803"
/translation="MTNDFKKEKKEDYFVNLKAISTEVLQEKMQDNAWVIVDTRLNDA
YNGWKLDGVKRGGHIKRAVDFSANWLNVYSDRKDEVLEQALKTKRIDLDKNIVLYDAN
GKDALVVADYLSKKGYKYLYKYDIKQWADDENLPMERYKNYQMIVPAFIIKDILDGKI
PETFEDSKNIKMIEASWGEESYTKGHIPTSVHVNTDIIEPPPTWMLDNDDNLTKFALD
YGLTKDDTVIVSSITPMASYRLAVILRYIGVKDVRVLNGGTNSWLSAGYELEFISNPK
HSCTNFGADIPVNSQLVVTTSELRQKLKEKNKFILVDNRTWDEHIGKVSGYTYYDKKG
RIPGALYGHSGSNSVSLEEYRNIDNTMRNKSEILEMWDKENIDVNKQLIFMCGSGWRA
AEVLTYANVIGVENTSLYSDGWMGWSLDNSNLIEVGEHK"
misc_feature 173478..>173747
/locus_tag="CDBI1_00675"
/note="Rhodanese-like domain; Region: Rhodanese;
pfam00581"
/db_xref="CDD:201322"
misc_feature 173715..173717
/locus_tag="CDBI1_00675"
/note="active site residue [active]"
/db_xref="CDD:29073"
misc_feature 173820..174704
/locus_tag="CDBI1_00675"
/note="Rhodanese-related sulfurtransferase [Inorganic ion
transport and metabolism]; Region: SseA; COG2897"
/db_xref="CDD:32722"
misc_feature 173913..174215
/locus_tag="CDBI1_00675"
/note="Rhodanese Homology Domain (RHOD); an alpha beta
fold domain found duplicated in the rhodanese protein. The
cysteine containing enzymatically active version of the
domain is also found in the Cdc25 class of protein
phosphatases and a variety of proteins...; Region: RHOD;
cl00125"
/db_xref="CDD:212175"
misc_feature 174105..174107
/locus_tag="CDBI1_00675"
/note="active site residue [active]"
/db_xref="CDD:29073"
misc_feature 174297..174671
/locus_tag="CDBI1_00675"
/note="Thiosulfate sulfurtransferase (TST), C-terminal,
catalytic domain. TST contains 2 copies of the Rhodanese
Homology Domain; this is the second repeat. Only the
second repeat contains the catalytically active Cys
residue; Region: TST_Repeat_2; cd01449"
/db_xref="CDD:29080"
misc_feature 174573..174575
/locus_tag="CDBI1_00675"
/note="active site residue [active]"
/db_xref="CDD:29080"
gene 175190..175927
/locus_tag="CDBI1_00680"
/db_xref="GeneID:12215804"
CDS 175190..175927
/locus_tag="CDBI1_00680"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197304.1"
/db_xref="GI:384359452"
/db_xref="GeneID:12215804"
/translation="MKKVKLAISFFILMIIGMTISYADTSINTRYNRLSKALEISEAN
FKFYNVKINSVINHNLSNKEFHNIFIEIINNLKLDKKGINWNQKGSGDKIQLCATIKG
SDKEISIKGINKNNKESYIVVDILDNKVYKHKEVIYSNVENVLNKYSSQVDVSACIVG
EYTKRLQNNKYDDILQKILYNMSAKQIDEVKDVNFLSITAYSKVLNDYELEYLGEKIN
LNIGIKYNEDDGKTLIYIATPIIKLDY"
misc_feature 175415..175924
/locus_tag="CDBI1_00680"
/note="Protein of unknown function (DUF1779); Region:
DUF1779; pfam08680"
/db_xref="CDD:204024"
gene 175948..177201
/locus_tag="CDBI1_00685"
/db_xref="GeneID:12215805"
CDS 175948..177201
/locus_tag="CDBI1_00685"
/EC_number="2.5.1.7"
/note="COG0766 UDP-N-acetylglucosamine enolpyruvyl
transferase"
/codon_start=1
/transl_table=11
/product="UDP-N-acetylglucosamine
1-carboxyvinyltransferase"
/protein_id="YP_006197305.1"
/db_xref="GI:384359453"
/db_xref="GeneID:12215805"
/translation="MAKIIVKKSNPLKGSVKIDGAKNAVLPIIAATLLANGKSTLNGV
PNLRDVHVISDLLRHVGAEVEYKENTLTVDASNIKTCEAPYELVRKMRASFLVMGPLL
ARFNSTKISMPGGCAIGTRPIDLHLKGFKALGAKIEMDHGFVEAATEKLVGNKLYLDF
PSVGATENIMMAASLAEGTTIIENAAEEPEIVDLANFLNEMGADVKGAGTNTIKIKGV
KELKGAEHNVIPDRIEAATYMVAAAMTKGDITVENVLMEHLKPVVAKLREAGCEITEM
DNSVRVVGPKVLKPIDIKTLPHPGFPTDVQAQFMAMLTVANGTGVVIETVFENRFMHV
AEFNRMGANIKIDGRSAVVNGVDELHGAAVNATDLRAGAALILCGLIAEGETQIGEIY
HIQRGYVDIDKKITALGGQIEIVED"
misc_feature 175948..177186
/locus_tag="CDBI1_00685"
/note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
Region: murA; TIGR01072"
/db_xref="CDD:162190"
misc_feature 175981..177171
/locus_tag="CDBI1_00685"
/note="UDP-N-acetylglucosamine enolpyruvyl transferase
catalyzes enolpyruvyl transfer as part of the first step
in the biosynthesis of peptidoglycan, a component of the
bacterial cell wall. The reaction is phosphoenolpyruvate +
UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555"
/db_xref="CDD:30128"
misc_feature order(175999..176010,176629..176640)
/locus_tag="CDBI1_00685"
/note="hinge; other site"
/db_xref="CDD:30128"
misc_feature order(176014..176016,176221..176223,176233..176235,
176308..176325,176425..176427,176434..176439,
176857..176859)
/locus_tag="CDBI1_00685"
/note="active site"
/db_xref="CDD:30128"
gene 177288..178352
/locus_tag="CDBI1_00690"
/db_xref="GeneID:12215806"
CDS 177288..178352
/locus_tag="CDBI1_00690"
/note="COG2385 Sporulation protein and related proteins"
/codon_start=1
/transl_table=11
/product="stage II sporulation protein D"
/protein_id="YP_006197306.1"
/db_xref="GI:384359454"
/db_xref="GeneID:12215806"
/translation="MKNPLVVLLGFVTCSVLVPSLITLVSYKNVELTEKPESPVSINK
TIKKSDIEDKGNKEEKSTVSYETVNKKAPIINVYNHITGKTEKMDMENYLCGVLAGEM
SSEFDIEALKAQSVAARTYVVYKQEHGKSSKHKNAVVCTDYKHCQEYKSYDTLKKLNG
EEWIKNKYSKIQEAVRGTKGQIITYNDKAILPLYFSTSSGKTENSEEVFSAKYPYLKS
VESPYDKYSPKFASTLKISNTDFVKSLRRAYSTIVIDVNNLSKQVSITKRSDAGTVEK
IKLGNKELTGKDIRTVFKLNSANFDIKFGEGYIDFVVKGYGHGVGMSQWGAEGMAEEG
YKYYDILSHYYTDTKIKDIY"
misc_feature 177510..177842
/locus_tag="CDBI1_00690"
/note="Stage II sporulation protein; Region: SpoIID;
pfam08486"
/db_xref="CDD:203956"
misc_feature 177543..178340
/locus_tag="CDBI1_00690"
/note="SpoIID/LytB domain; Region: SpoIID_LytB; TIGR02669"
/db_xref="CDD:200209"
gene 178418..179086
/locus_tag="CDBI1_00695"
/db_xref="GeneID:12215807"
CDS 178418..179086
/locus_tag="CDBI1_00695"
/note="COG0739 Membrane proteins related to
metalloendopeptidases"
/codon_start=1
/transl_table=11
/product="cell wall endopeptidase"
/protein_id="YP_006197307.1"
/db_xref="GI:384359455"
/db_xref="GeneID:12215807"
/translation="MKKKLLEKDGFYLSLFVCVCLLAVGGVWFTNNNVDKLASNKGIM
ENANKDSEEEIHLIEKDKKDAIPTATDSKQNLEKAKSKEENKSSTTKLNYIGDKVIRG
YSEKEPSYSKTLDVWETHKGVDISCTKGKEVKSLLNGIVVDVFNDEEYGQSVKIKSDN
NIVVVYSNLDKNVSVKKEQKVTEGQSLGTVGSTSQIESEEGIHVHLEAYSGEKSIDPM
SLIK"
misc_feature <178757..179071
/locus_tag="CDBI1_00695"
/note="Membrane proteins related to metalloendopeptidases
[Cell envelope biogenesis, outer membrane]; Region: NlpD;
COG0739"
/db_xref="CDD:31082"
misc_feature 178775..179068
/locus_tag="CDBI1_00695"
/note="Peptidase family M23; Region: Peptidase_M23;
pfam01551"
/db_xref="CDD:201854"
gene 179184..179444
/locus_tag="CDBI1_00700"
/db_xref="GeneID:12215808"
CDS 179184..179444
/locus_tag="CDBI1_00700"
/note="COG2378 Predicted transcriptional regulator"
/codon_start=1
/transl_table=11
/product="stage III sporulation protein D"
/protein_id="YP_006197308.1"
/db_xref="GI:384359456"
/db_xref="GeneID:12215808"
/translation="MRSHIEERAIVVAKYILEKNTTVRQTAKTFGVSKSTIHKDVTER
LKEINPSLAKEVKNVLDKNKSERHIRGGLATKLKYEKEHKKM"
misc_feature 179187..179432
/locus_tag="CDBI1_00700"
/note="Stage III sporulation protein D; Region: SpoIIID;
pfam12116"
/db_xref="CDD:152551"
gene 179641..180660
/locus_tag="CDBI1_00705"
/db_xref="GeneID:12215809"
CDS 179641..180660
/locus_tag="CDBI1_00705"
/note="COG1077 Actin-like ATPase involved in cell
morphogenesis"
/codon_start=1
/transl_table=11
/product="rod shape-determining protein Mbl"
/protein_id="YP_006197309.1"
/db_xref="GI:384359457"
/db_xref="GeneID:12215809"
/translation="MAGADIGIDLGTANVLVYVSGKGIVLEEPSVVAIDKRTDSVLAV
GEEAKKMIGRTPGNIVAIRPLRDGVISDYDVTEKMLKSFIDKIVDKKGFGRFFMPRIM
VCVPTGVTEVEKRAVEDATRQAGAREVYIIEEPIAAAIGAGVDISQPNGNMIIDIGGG
TVDIAVISLGGAVVSESIKVGGDRFDDAIVKYMKKQHNLLIGERTAEKIKFEIGSAFK
REEEKYMKITGRNLITGLPSSITINSTEMLEALRECVEQIVVATHAVLEKTPPELAAD
IGDVGIIMTGGGSLLYGLDKIIEQRTGITVTIADEPLSCVAKGTGIALGSIDLLETGG
SFKRK"
misc_feature 179641..180657
/locus_tag="CDBI1_00705"
/note="rod shape-determining protein Mbl; Provisional;
Region: PRK13928"
/db_xref="CDD:184402"
misc_feature 179656..180624
/locus_tag="CDBI1_00705"
/note="MreB and similar proteins; Region: MreB_like;
cd10225"
/db_xref="CDD:212668"
misc_feature order(179665..179667,179671..179682,179842..179844,
180040..180042,180106..180108,180112..180123,
180184..180189,180259..180261,180268..180273,
180496..180504,180508..180513,180577..180579,
180586..180588)
/locus_tag="CDBI1_00705"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212668"
misc_feature order(179665..179667,180106..180108)
/locus_tag="CDBI1_00705"
/note="Mg binding site [ion binding]; other site"
/db_xref="CDD:212668"
misc_feature order(179743..179745,179791..179793,179815..179817,
180085..180087,180091..180093,180151..180153,
180247..180249,180253..180255,180322..180324,
180346..180348,180355..180357,180445..180447,
180454..180456,180550..180552,180622..180624)
/locus_tag="CDBI1_00705"
/note="putative protofilament interaction site
[polypeptide binding]; other site"
/db_xref="CDD:212668"
misc_feature order(180067..180072,180094..180096,180472..180480,
180553..180555,180559..180561,180568..180570)
/locus_tag="CDBI1_00705"
/note="RodZ interaction site [polypeptide binding]; other
site"
/db_xref="CDD:212668"
gene 180676..181104
/gene="fabZ"
/locus_tag="CDBI1_00710"
/db_xref="GeneID:12215810"
CDS 180676..181104
/gene="fabZ"
/locus_tag="CDBI1_00710"
/EC_number="4.2.1.-"
/note="COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl
carrier protein) dehydratases"
/codon_start=1
/transl_table=11
/product="(3R)-hydroxymyristoyl-ACP dehydratase"
/protein_id="YP_006197310.1"
/db_xref="GI:384359458"
/db_xref="GeneID:12215810"
/translation="MLNIDEIKKLIPHRYPFLLVDKITELEVGKRAVGIKNVTVNEPF
FQGHFPEYPLMPGVLIVEALAQVCGVAMMSVEENKGKLGVFAGIDKVRIKREVRPGDT
LTMEIEMTTLRKNIAKADAKAYVGEELVCKGELMFALVEK"
misc_feature 180706..181095
/gene="fabZ"
/locus_tag="CDBI1_00710"
/note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
protein (ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid...; Region: FabZ; cd01288"
/db_xref="CDD:48033"
gene complement(181215..181724)
/locus_tag="CDBI1_00715"
/db_xref="GeneID:12215811"
CDS complement(181215..181724)
/locus_tag="CDBI1_00715"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197311.1"
/db_xref="GI:384359459"
/db_xref="GeneID:12215811"
/translation="MYLAKVNYSDDDVIQMLSSVLKTIINENTIVVCIGTDRAIGDTL
GPLVGTILKNSNFKYPVYGTLDNPIHALNIYESLDTIKNTHIQGNFLAIDACLGSQSN
IGNIQIREGPILPGKGVGKKLPQIGNYSIVGIVDKIDENNKLSFNNIRLSFILDLAET
IALALLVST"
misc_feature complement(181239..181712)
/locus_tag="CDBI1_00715"
/note="Protein of unknown function (DUF1256); Region:
DUF1256; cl06087"
/db_xref="CDD:141909"
gene 182153..183346
/locus_tag="CDBI1_00720"
/db_xref="GeneID:12215812"
CDS 182153..183346
/locus_tag="CDBI1_00720"
/note="COG0192 S-adenosylmethionine synthetase"
/codon_start=1
/transl_table=11
/product="S-adenosylmethionine synthetase"
/protein_id="YP_006197312.1"
/db_xref="GI:384359460"
/db_xref="GeneID:12215812"
/translation="MARHLFTSESVTEGHPDKICDQISDSILDALLEKDPQSRVACET
TVTTGLVLVAGEISTSAYVDIPKLVRETVREIGYTRAKYGFDCDTCAVITSIDEQSGD
IAMGVDEGLESKTGEEIEEEIEKVGAGDQGIMFGFACNETPELMPLPISLAHKLSRRL
TEVRKTGLVDYLRPDGKTQVTVEYEGSKAVRVHTVLISAQHCETVSNDKIREDLINHV
IKEVIPAELLDEETKIYINPTGRFVIGGPQGDTGLTGRKIIIDTYGGYSRHGGGAFSG
KDPTKVDRSAAYAARYVAKNIVAAGLADKCEIELAYAIGIARPLSIFIDTFGTGKVSE
EKLVELVNKHFDLRPGAIIRDLDLRKPLYKKVAAYGHFGRTDIDLPWERTDKVEQLRK
DALGE"
misc_feature 182159..183334
/locus_tag="CDBI1_00720"
/note="S-adenosylmethionine synthetase; Validated; Region:
PRK05250"
/db_xref="CDD:179974"
misc_feature 182159..182452
/locus_tag="CDBI1_00720"
/note="S-adenosylmethionine synthetase, N-terminal domain;
Region: S-AdoMet_synt_N; pfam00438"
/db_xref="CDD:201226"
misc_feature 182525..182878
/locus_tag="CDBI1_00720"
/note="S-adenosylmethionine synthetase, central domain;
Region: S-AdoMet_synt_M; pfam02772"
/db_xref="CDD:202384"
misc_feature 182882..183301
/locus_tag="CDBI1_00720"
/note="S-adenosylmethionine synthetase, C-terminal domain;
Region: S-AdoMet_synt_C; pfam02773"
/db_xref="CDD:111646"
gene 183662..184759
/locus_tag="CDBI1_00725"
/db_xref="GeneID:12215813"
CDS 183662..184759
/locus_tag="CDBI1_00725"
/note="COG3949 Uncharacterized membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197313.1"
/db_xref="GI:384359461"
/db_xref="GeneID:12215813"
/translation="MSGKVNIKTVISFAGAYVATVIGSGFATGQEILQFFTFYGYAGI
IGGIISMVLFSWFGAEVIDKGRELKLKEPIKIYQVYCGKYLGTFFEWFGPLFLFGTLV
IMIAGAGATLSEYYGLNPYVGRIGMAIVSLITVSLGLTRLSKILGNIGPIIIIFTLLV
GAISLFSNIDALSNAGNMVDSLNIKTATSNGYFSGVLYTCYNVIIVITFLTGMGASAV
NKKDAVWGGIVGGVALMAAAIMMNLALLSNIGNIYTKEIPALYLADKISPIIGILFSV
VLLLGIYTTAVPLLWSVTNRFVEDDHPKFKIITIVVSILACIGGLLPFDKLVGTLYPY
TGYMGILILLCMLYRRITKTEGYKENKSEIS"
misc_feature 183707..184705
/locus_tag="CDBI1_00725"
/note="Uncharacterized membrane protein [Function
unknown]; Region: COG3949"
/db_xref="CDD:33730"
gene 185023..187242
/locus_tag="CDBI1_00730"
/db_xref="GeneID:12215814"
CDS 185023..187242
/locus_tag="CDBI1_00730"
/note="'COG0507 ATP-dependent exoDNAse (exonuclease V),
alpha subunit - helicase superfamily I member'"
/codon_start=1
/transl_table=11
/product="DNA-binding protein"
/protein_id="YP_006197314.1"
/db_xref="GI:384359462"
/db_xref="GeneID:12215814"
/translation="MEKLEGMISEIVFKNEDNGYTIAHLVNENDEIVVVGCMPTLAIG
ESIEVEGKWVNHKIYGTQFEVNSFMPVTPSSLEGIYVYLSSGMIHGIGEKMAKRIIDK
FGVDTLEVIQNSPEKLQEVEGIGSKKVKQIVKSYEEDRELRNIIIQLSPFGITPNYCL
KIYKKYKSSAIEVINKNPYQLAEDIRGIGFKVADSIASKIGIDKNSKDRICQGILYTL
NKSLSNGHTYLPEHVLIQDSEKLLELNGEIIKECVMMLVYNQKIHIEKVNNENLIYLM
PYYLAENGVCSQIVKLSQYEFEDLKIDIDNEINVLEEDKKIKLAEKQILAVKESVNSG
VLIITGGPGTGKTTTINAIIDIFENNGKSVTLAAPTGRAAKRMSETSNKEAKTIHRLL
EMGFSTDDDLTFFKDEEDPINSDVIIVDEVSMVDIILMYNLLRAIKLGTRVILVGDSD
QLPSVGAGNVLKDMINSNIINVVKLNEIFRQAQESMIIVNAHKINNGEPLYLNTKGKD
FFFIRKSTNEEILNEIIGLVNERLPKFYKVDKLKDIQVLSSMRKGELGVTNLNIELQK
YLNKKEKFKVEESFSKRLFRVGDKVMQVKNNYTKKWETEDQKESGEGIYNGDIGYVYH
IDKDKKTIYILFDQTKIVSYLYDELDEIDHSFCTTIHKSQGSEFPVVVLPIAWAPPML
LSRNLLYTAVTRAKKLVVLVGDVKYLEYMIKNNRVNQRYSNLGYKLNKFKQEGLLIE"
misc_feature 185032..187170
/locus_tag="CDBI1_00730"
/note="helicase, putative, RecD/TraA family; Region:
recD_rel; TIGR01448"
/db_xref="CDD:162366"
misc_feature 185974..186519
/locus_tag="CDBI1_00730"
/note="AAA domain; Region: AAA_30; pfam13604"
/db_xref="CDD:205782"
misc_feature 186775..187128
/locus_tag="CDBI1_00730"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene 187245..188027
/locus_tag="CDBI1_00735"
/db_xref="GeneID:12215815"
CDS 187245..188027
/locus_tag="CDBI1_00735"
/note="COG1040 Predicted amidophosphoribosyltransferases"
/codon_start=1
/transl_table=11
/product="phosphoribosyl transferase"
/protein_id="YP_006197315.1"
/db_xref="GI:384359463"
/db_xref="GeneID:12215815"
/translation="MKICNDNFIKNFKNMINKCLDFIYPENISCIICDKSIKKTNTYS
ICKSCFKEMNFIQDGCMKCGKPIIRHSIEKEFIEECSYCFNKDFYFDKSISCIEYNDV
TKKMVLGLKYNQKTFMAKYIAQIMKEKLYLENIKFDYILFVPLHKKRLNKRGFNQAQK
IAFNLSKIVNIPLLDCISRKKYTRMLYKLNKKERKEELKNVFVVKENVKLINNKNILL
IDDIFTTGLTTNEISKLLKLSGANKVFVLTLLTKANDNYIME"
misc_feature 187422..187991
/locus_tag="CDBI1_00735"
/note="comF family protein; Region: comF; TIGR00201"
/db_xref="CDD:161762"
misc_feature 187608..188000
/locus_tag="CDBI1_00735"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(187674..187676,187701..187703,187902..187910,
187914..187928,187998..188000)
/locus_tag="CDBI1_00735"
/note="active site"
/db_xref="CDD:206754"
gene 188368..190272
/locus_tag="CDBI1_00740"
/db_xref="GeneID:12215816"
CDS 188368..190272
/locus_tag="CDBI1_00740"
/note="COG3711 Transcriptional antiterminator"
/codon_start=1
/transl_table=11
/product="transcription antiterminator"
/protein_id="YP_006197316.1"
/db_xref="GI:384359464"
/db_xref="GeneID:12215816"
/translation="MNKRQENLLTTLLLKEEFINVNKIANDFECSERTIRNDCKYIDE
WLSTFCNAYIKRKPNIGIKFSGDGTDKILVNQKLRGEVKRVNSELHKQVEILNLLLCN
NKKVTLNDLSNKLYINKNIVREEISKLSVALNNYNLNVSTKKGSGIYIEGDEKDIRIM
LVSFLFKYIDKYRLNIDEIEYFHIVDIIIVKNIMLTIEEDMDIRLTDISFKQLMLFLL
INIIRIRLGNSLKVSNTKKELKLKMLILDIEDELKSNLSIVLNYEEKLFIESLILGMN
KQINSNNIKKSLYLNEELASYTKKIINLVSEESGINFNNDILLYEQLICHLNVTMHQM
KSNVYLENPLLDNIKTKFCFLFTVISSSIEIELKGKQITEDEIGYLTLHFQTSLERKY
SKRESNKKASIVCPFSFGVSMLLKVKIEKRFDNIKIIETLREEDLKRDNFNKTIDFII
AFQEYENIQKPIFITTPLFTDEDENKLKEFTNKIKEKDTSYKLMNRLMMSDYLIRELE
HDDIYEAITYLTNLLIEKHYAEKEYLQSIITREKSYPTNVGKGILFPHGDMKYIKQSV
LCFARLKTPIKIRNGKDIKIILLLAYKKDDDRKVFRELFKEISNLTEDENMLDILSKC
DIEKVKDILI"
misc_feature 188368..189891
/locus_tag="CDBI1_00740"
/note="Transcriptional antiterminator [Transcription];
Region: BglG; COG3711"
/db_xref="CDD:33506"
misc_feature 189262..189528
/locus_tag="CDBI1_00740"
/note="PRD domain; Region: PRD; pfam00874"
/db_xref="CDD:201484"
misc_feature 189562..189819
/locus_tag="CDBI1_00740"
/note="PTS_IIB_bgl_like: the PTS (phosphotransferase
system) IIB domain of a family of sensory systems composed
of a membrane-bound sugar-sensor (similar to BglF) and a
transcription antiterminator (similar to BglG) which
regulate expression of genes involved...; Region:
PTS_IIB_bgl_like; cd05568"
/db_xref="CDD:99910"
misc_feature order(189580..189591,189595..189603)
/locus_tag="CDBI1_00740"
/note="P-loop; other site"
/db_xref="CDD:99910"
misc_feature order(189580..189582,189586..189591,189598..189603)
/locus_tag="CDBI1_00740"
/note="active site"
/db_xref="CDD:99910"
misc_feature 189580..189582
/locus_tag="CDBI1_00740"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:99910"
misc_feature 189868..190266
/locus_tag="CDBI1_00740"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:29266"
misc_feature order(189985..189987,190033..190035)
/locus_tag="CDBI1_00740"
/note="active site"
/db_xref="CDD:29266"
misc_feature 190033..190035
/locus_tag="CDBI1_00740"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29266"
gene 190413..190721
/locus_tag="CDBI1_00745"
/db_xref="GeneID:12215817"
CDS 190413..190721
/locus_tag="CDBI1_00745"
/note="COG1447 Phosphotransferase system
cellobiose-specific component IIA"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIA"
/protein_id="YP_006197317.1"
/db_xref="GI:384359465"
/db_xref="GeneID:12215817"
/translation="MEEIVLKIIIHAGNAKSMLYEALDYAKENDFKKADELIENANEE
ILKAHKVQTELIQKEAGGDKSDISILLIHSQDHLMTCMSERNLIKEMIMLRKEIQKLK
"
misc_feature 190413..190703
/locus_tag="CDBI1_00745"
/note="PTS_IIA, PTS system, lactose/cellobiose specific
IIA subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_lac;
cd00215"
/db_xref="CDD:29270"
misc_feature order(190413..190415,190575..190577,190623..190628,
190647..190649)
/locus_tag="CDBI1_00745"
/note="methionine cluster; other site"
/db_xref="CDD:29270"
misc_feature order(190458..190460,190629..190631,190635..190643)
/locus_tag="CDBI1_00745"
/note="active site"
/db_xref="CDD:29270"
misc_feature 190629..190631
/locus_tag="CDBI1_00745"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29270"
misc_feature 190638..190640
/locus_tag="CDBI1_00745"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:29270"
gene 190746..191072
/locus_tag="CDBI1_00750"
/db_xref="GeneID:12215818"
CDS 190746..191072
/locus_tag="CDBI1_00750"
/note="COG1440 Phosphotransferase system
cellobiose-specific component IIB"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIB"
/protein_id="YP_006197318.1"
/db_xref="GI:384359466"
/db_xref="GeneID:12215818"
/translation="MKRKVYLFCSFGMSTSLLADKMQKVADEHNLPIEVEAFPIAEID
KIVEEKNPDCILLGPQVKYMLKELKPKFEAQGKLIDIINEVDYGTMNGEKVLKLAIKL
IKSKQA"
misc_feature 190755..191048
/locus_tag="CDBI1_00750"
/note="PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme
II (EII) of the N,N-diacetylchitobiose-specific and
lichenan-specific phosphoenolpyruvate:carbohydrate
phosphotransferase system (PTS). In these systems, EII is
either a lichenan- or an N; Region:
PTS_IIB_chitobiose_lichenan; cd05564"
/db_xref="CDD:99906"
misc_feature order(190770..190772,190776..190781,190785..190790,
190923..190925,191004..191006)
/locus_tag="CDBI1_00750"
/note="active site"
/db_xref="CDD:99906"
misc_feature 190770..190790
/locus_tag="CDBI1_00750"
/note="P-loop; other site"
/db_xref="CDD:99906"
misc_feature 190770..190772
/locus_tag="CDBI1_00750"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:99906"
gene 191111..192445
/locus_tag="CDBI1_00755"
/db_xref="GeneID:12215819"
CDS 191111..192445
/locus_tag="CDBI1_00755"
/note="COG1455 Phosphotransferase system
cellobiose-specific component IIC"
/codon_start=1
/transl_table=11
/product="PTS system, cellobiose-specific IIC component"
/protein_id="YP_006197319.1"
/db_xref="GI:384359467"
/db_xref="GeneID:12215819"
/translation="MNRLERILMPLAEKIGKNKLLIAIRDGFLISSPLLIIGSLFLLV
ANFPIKGWNEFVGQIFGPDWAVKLQQPTVATFEVMTLLAVLGIGYSYAKQIDVDPIAS
AAVAIVAFFIVTPFVIPYTPEGTESVYMVTGIPLGWMGSKGMFVGMITAITSVKLFAA
VVKKGWTLKMPDGVPPTVSKSFAALIPSAIVMVVFFLVKIAFEATPYGSIHEFIFKFL
QMPLLKLGNSLGAMAIAYIFLHLFWFFGINGSSVVGAVYNPILKILSAENLAAFQAGS
KIPNIITGQFQDMFATFGGAGSTLSLVIAMLLICKSKRIKSMGKLSILPGIFGINEPL
IFGLPIMLNPILLIPFAIVPTINIIIAYFCMSAGLVPLTNGVQLPWTTPIIFSGFLTT
GWQGAVLQLVLLILGIFMYIPFIKMLDKQYLREENETVEEEDDDISFDDLVL"
misc_feature 191120..192382
/locus_tag="CDBI1_00755"
/note="Phosphotransferase system cellobiose-specific
component IIC [Carbohydrate transport and metabolism];
Region: CelB; COG1455"
/db_xref="CDD:31644"
misc_feature 191132..192382
/locus_tag="CDBI1_00755"
/note="Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
transport and metabolism]; Region: PtsG; cl00557"
/db_xref="CDD:214082"
gene 192456..192974
/locus_tag="CDBI1_00760"
/db_xref="GeneID:12215820"
CDS 192456..192974
/locus_tag="CDBI1_00760"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197320.1"
/db_xref="GI:384359468"
/db_xref="GeneID:12215820"
/translation="MKKIVMILDQIQAGAGGKEKSNIPPAGKSSPLGPGVMMEQFLNE
SKVIATLFCGDEFFVNNEKEVTSKMIAMVKKLNPDVVICGPSFNYENFSKMSAILSKN
INDKTDIPAFAAMSEENIDVINEYKNDICIVKTPKKGGIGLNDSLNNICKLAKAIANK
EDITLMKEEFCY"
misc_feature 192462..>192962
/locus_tag="CDBI1_00760"
/note="glycine reductase, selenoprotein B; Region:
gly_red_sel_B; TIGR01917"
/db_xref="CDD:130972"
gene 193070..194029
/locus_tag="CDBI1_00765"
/db_xref="GeneID:12215821"
CDS 193070..194029
/locus_tag="CDBI1_00765"
/note="COG1446 Asparaginase"
/codon_start=1
/transl_table=11
/product="glycosylasparaginase"
/protein_id="YP_006197321.1"
/db_xref="GI:384359469"
/db_xref="GeneID:12215821"
/translation="MWGMIATWRMALEGITEASEHLEKGMEAGDAVELAVRRVEDYPF
YKSVGYGGLPNENCEVELDAAFMDGNTLDIGAVAGIRDYSNPVSIARKLSYEKVNNFL
VGIGAEDYAHKNGFERKNMLTDRAKLHYKKRKKETLDKGLSPYAGHDTVGMISLDKTG
KMCAATSTSGLFMKKRGRIGDSALSGSGFYVDSSIGGATATGLGEDLMKGCISYEIVR
LMKEGKHPQEACDIAVNELDKQLIKRRGKAGDLSLVAMNNKGEWGVATNIVDFTFSVV
TKEESPAVYISNRVDGKTIHKVISNEWMEAYEARIKAPIEVSE"
misc_feature 193076..193894
/locus_tag="CDBI1_00765"
/note="Glycosylasparaginase catalyzes the hydrolysis of
the glycosylamide bond of asparagine-linked glycoproteins.
This enzyme is an amidase located inside lysosomes.
Mutation of this gene in humans causes a genetic disorder
known as aspartylglycosaminuria (AGU)...; Region:
Glycosylasparaginase; cd04513"
/db_xref="CDD:72875"
misc_feature order(193091..193093,193511..193519,193571..193573,
193601..193603,193670..193672)
/locus_tag="CDBI1_00765"
/note="active site"
/db_xref="CDD:72875"
misc_feature order(193283..193291,193304..193306,193364..193378,
193382..193387,193394..193399,193595..193606,
193619..193627,193637..193639,193682..193684,
193691..193693,193709..193711,193721..193723,
193775..193777)
/locus_tag="CDBI1_00765"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:72875"
misc_feature 193517..193519
/locus_tag="CDBI1_00765"
/note="catalytic nucleophile [active]"
/db_xref="CDD:72875"
gene 194077..195129
/locus_tag="CDBI1_00770"
/db_xref="GeneID:12215822"
CDS 194077..195129
/locus_tag="CDBI1_00770"
/note="COG0624 Acetylornithine
deacetylase/Succinyl-diaminopimelate desuccinylase and
related deacylases"
/codon_start=1
/transl_table=11
/product="peptidase"
/protein_id="YP_006197322.1"
/db_xref="GI:384359470"
/db_xref="GeneID:12215822"
/translation="MNIISNKIDELKEDLLSDIIDIVKIPSVKGESENGFPFGEKVGE
ALNKALEISKKLGFKVRNLDNYIGYAEHGDSDDYVCVIGHVDVVHEGDGWKHQPYKGE
ETNGRIYGRGVLDNKGPIMSALYGLYAIKELNLKLDKRVRIIFGTNEESGFEDIPYYL
EKEKTPIMGFTPDCKYPVVYGEKGMAKIRIKSKINYEEDVYLGFIENMSENVLVTYKE
LNIENSNTILDIKVKYDFSYKLKDVLDEIKASFPNSIDIEVISNFNPVYFDKESNLVK
KLQLAYERVTSLDGTPVTTNGGTYAKVMPNIVPFGPSFPGQKGIAHNPDEYMDIEDII
LNAKIFANAIYELAKE"
misc_feature 194077..195126
/locus_tag="CDBI1_00770"
/note="Acetylornithine
deacetylase/Succinyl-diaminopimelate desuccinylase and
related deacylases [Amino acid transport and metabolism];
Region: ArgE; COG0624"
/db_xref="CDD:30969"
misc_feature 194095..>194694
/locus_tag="CDBI1_00770"
/note="Zinc peptidases M18, M20, M28, and M42; Region:
Zinc_peptidase_like; cl14876"
/db_xref="CDD:214231"
misc_feature order(194326..194328,194419..194421,194521..194526,
194593..194595)
/locus_tag="CDBI1_00770"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193495"
misc_feature <194731..195117
/locus_tag="CDBI1_00770"
/note="Zinc peptidases M18, M20, M28, and M42; Region:
Zinc_peptidase_like; cl14876"
/db_xref="CDD:214231"
gene 195132..195806
/locus_tag="CDBI1_00775"
/db_xref="GeneID:12215823"
CDS 195132..195806
/locus_tag="CDBI1_00775"
/note="COG3142 Uncharacterized protein involved in copper
resistance"
/codon_start=1
/transl_table=11
/product="copper homeostasis protein"
/protein_id="YP_006197323.1"
/db_xref="GI:384359471"
/db_xref="GeneID:12215823"
/translation="MLEIIGMSVEDAKIIEDCGADRIELVSALTEGGLTPSFGLIESV
VNSVKIPVNVMIRHHAKSFVYSKEDISIMQKDIGVVKEIGANGVVFGVLDKNNNIDEK
NLNVLLKCCDNLDVTFHRAIDESNTIDSVKILKDYDKITNILTSGGKGSIVDNIQMIK
NMMLSSNHIKILLGGGLNFNNIEKIKELTKASNFHFGTAIRINNSPFEDIDRQKLKQL
VNIISR"
misc_feature 195132..195740
/locus_tag="CDBI1_00775"
/note="Uncharacterized protein involved in copper
resistance [Inorganic ion transport and metabolism];
Region: CutC; COG3142"
/db_xref="CDD:32956"
gene 196359..196910
/locus_tag="CDBI1_00780"
/db_xref="GeneID:12215824"
CDS 196359..196910
/locus_tag="CDBI1_00780"
/note="COG1544 Ribosome-associated protein Y (PSrp-1)"
/codon_start=1
/transl_table=11
/product="RNA-binding protein"
/protein_id="YP_006197324.1"
/db_xref="GI:384359472"
/db_xref="GeneID:12215824"
/translation="MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSAR
KARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKS
IRFQDSEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN
IDSDEIAVVYKRNNGGYGIIEHE"
misc_feature 196362..196595
/locus_tag="CDBI1_00780"
/note="RaiA ('ribosome-associated inhibitor A', also known
as Protein Y (PY), YfiA, and SpotY, is a stress-response
protein that binds the ribosomal subunit interface and
arrests translation by interfering with aminoacyl-tRNA
binding to the ribosomal A site; Region: RaiA; cd00552"
/db_xref="CDD:29642"
misc_feature order(196368..196370,196374..196376,196380..196382,
196434..196436,196443..196445,196461..196466,
196476..196478,196488..196490,196515..196517,
196527..196538,196545..196547,196551..196553,
196560..196562,196566..196568,196575..196577)
/locus_tag="CDBI1_00780"
/note="30S subunit binding site; other site"
/db_xref="CDD:29642"
gene 197042..199717
/locus_tag="CDBI1_00785"
/db_xref="GeneID:12215825"
CDS 197042..199717
/locus_tag="CDBI1_00785"
/note="'COG0653 Preprotein translocase subunit SecA
(ATPase, RNA helicase)'"
/codon_start=1
/transl_table=11
/product="preprotein translocase SecA subunit"
/protein_id="YP_006197325.1"
/db_xref="GI:384359473"
/db_xref="GeneID:12215825"
/translation="MSFMDNLFNMADKKELKKFNKTVDIIDSLEPKFESMADSELKNM
TNIFKERLANGESIDDILPEAFAVVREVSKRVLGLRHYRVQMIGGIVLHQGRIAEMKT
GEGKTLVATAPVYLNALTGKGVHVVTVNDYLAKRDRDQMAKIYEFLGMSVGVIIHGQN
PKVRKEQYDCDITYGTNNEYGFDYLKDNMVIHKEQRVQRGLNYAIVDEVDSILIDEAR
TPLIISGPGDKSTHLYSDANTFVLTLKPDDYELEEKDKAVSLTASGIQKAEVYFNVDN
ITDISHTELYHHINQALRAHVIMKKDVDYVAKDGEIVIVDEFTGRLMFGRRYSEGLHQ
AIEAKEGLKIQRESKTLATVTFQNYFRMYKKLSGMTGTAKTEEEEFKAIYKMDVFQVP
TNKLMVREDLPDSVYKSEIGKFNAVAQEIIERHKVNQPILVGTVSIEKSELLSQILKK
KGIKHEVLNAKHHDKEAEIIAQAGRLGAVTIATNMAGRGTDIVLGGNPDFLTKREMRR
NGFKEEIVNRVDTPIEGIPVKGNEILFEAREEYEKLFEKFKQQTQEEQKQVVEAGGLA
IIGTERHESRRIDNQLRGRAGRQGDPGSSRFYIGLDDDLMRLFGSDRISGIVDKIGLE
EDMPIEHRILSKSIEGAQKKVEGKNFGIRKHVLQYDDVMNKQREIIYAERKRVLEGED
LQEQIQSMTHSIIEEAVTLYTQDKGFDEEGFKEHMYNLFLPKGSIEIPEIEKLNPVEI
TEKVYEIAMKIYTSKEEQVGYERMREVERVILLQAVDNHWIDHIDAMDQLRQGIGLRA
VGQQDPVIAYKMEGFDMFDEMNKHIKEDTVRYLFNITIETPVERKAVVDVENLSSPSD
GTLPTSKTVKKDEKVGRNDLCPCGSGKKYKNCCGR"
misc_feature 197042..199714
/locus_tag="CDBI1_00785"
/note="preprotein translocase subunit SecA; Reviewed;
Region: PRK12904"
/db_xref="CDD:183826"
misc_feature 197315..>197680
/locus_tag="CDBI1_00785"
/note="DEAD/DEAH box helicase; Region: DEAD; pfam00270"
/db_xref="CDD:201124"
misc_feature 197348..197362
/locus_tag="CDBI1_00785"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28927"
misc_feature 197660..197671
/locus_tag="CDBI1_00785"
/note="putative Mg++ binding site [ion binding]; other
site"
/db_xref="CDD:28927"
misc_feature 197717..198052
/locus_tag="CDBI1_00785"
/note="SecA preprotein cross-linking domain; Region:
SecA_PP_bind; smart00958"
/db_xref="CDD:198026"
misc_feature 198257..>198517
/locus_tag="CDBI1_00785"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
misc_feature order(198347..198358,198416..198421,198488..198496)
/locus_tag="CDBI1_00785"
/note="nucleotide binding region [chemical binding]; other
site"
/db_xref="CDD:28960"
misc_feature 199658..199714
/locus_tag="CDBI1_00785"
/note="SEC-C motif; Region: SEC-C; pfam02810"
/db_xref="CDD:202406"
gene 199853..200839
/locus_tag="CDBI1_00790"
/db_xref="GeneID:12215826"
CDS 199853..200839
/locus_tag="CDBI1_00790"
/note="COG1186 Protein chain release factor B"
/codon_start=1
/transl_table=11
/product="peptide chain release factor 2"
/protein_id="YP_006197326.1"
/db_xref="GI:384359474"
/db_xref="GeneID:12215826"
/translation="MNQQDFWNDNEVAQRVLQENKSLKETLEEYESLKSLLEDIEVLI
EIGLEEDDDSVERDIEKSIESMEEKLSEMKIKTLLNGEYDKNNAILSINAGTGGLDAQ
DWAQMLLRMYIRWSESKGYKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHR
LVRISPFDPSGKRHTSFASIDVTPELDENIEVEINPSDLKIDTYRASGAGGQHVNTTD
SAVRITHIPTGVVVQCQNERSQHLNKDRAMRLLMAKLIELKELEQKEKIEDIQGKYSQ
ITWGSQIRSYVFQPYKLVKDHRTNAEFGNVDSVMNGNIDLFINEYLKMNKIV"
misc_feature 199853..200830
/locus_tag="CDBI1_00790"
/note="peptide chain release factor 2; Provisional;
Region: PRK05589"
/db_xref="CDD:180152"
misc_feature 199985..200317
/locus_tag="CDBI1_00790"
/note="PCRF domain; Region: PCRF; pfam03462"
/db_xref="CDD:202648"
misc_feature 200405..200746
/locus_tag="CDBI1_00790"
/note="RF-1 domain; Region: RF-1; pfam00472"
/db_xref="CDD:201249"
gene 200983..203124
/locus_tag="CDBI1_00795"
/db_xref="GeneID:12215827"
CDS 200983..203124
/locus_tag="CDBI1_00795"
/note="COG2183 Transcriptional accessory protein"
/codon_start=1
/transl_table=11
/product="RNA-binding protein"
/protein_id="YP_006197327.1"
/db_xref="GI:384359475"
/db_xref="GeneID:12215827"
/translation="MDINQILKKEFNLRDEQINNTLKLIDEGNTIPFIARYRKEMTGE
MSDVTLREFYEKLMYLRNLQSRKDDVVRLIDEQGKLTDEITQNIEKAKTLQEVEDIYA
PYKQKKRTRATIAKEKGLENLALSILENNLDNIEIEAKNYLDEEKEVLSIEDALKGAR
DIIAELVSDDAKIRKYIRELALREGMIVSKSATDEKSVYDMYYDYNEAVKSMAPHRVL
AINRGEKESFLKVKLEINNDKVLNYIINEYVNDKNFKNKEEIVSSIEDSYKRLIFPSI
EREIRNHLTEIAQERAISVFGKNVKSLLLQPPVKDKVVMGFDPAFRTGCKIAVVDKNG
KLLDYTTVYPTDPQNDVEGAKKVLKGLIEKYDIDIISIGNGTASRESETFVSEMIKEI
DSEVQYVIVSEAGASVYSASELANEEHPDINVSIRGAISIARRLQDPLAELVKIDPKS
IGVGQYQHDLNKKRLEEVLDGVVEDSVNSVGVDLNTASYSLLEHVAGISKAIAKNIIA
YREENGDFTSRAQLKKVKRLGPQAFTQCAGFMRILEGKNPLDNTGVHPESYDICKKMI
EIIGYSLDDVKNKNIGEIDEKIKEIGLRELSEKLEVGQVTLKDIIAEIKKPGRDPREE
GIKPILRTDVLKIEDIQEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKD
PMSIVTVGDIVDVKVIGIDLNKKRVALSMKK"
misc_feature 200983..203121
/locus_tag="CDBI1_00795"
/note="Transcriptional accessory protein [Transcription];
Region: Tex; COG2183"
/db_xref="CDD:32366"
misc_feature 201001..201570
/locus_tag="CDBI1_00795"
/note="Tex-like protein N-terminal domain; Region: Tex_N;
pfam09371"
/db_xref="CDD:150144"
misc_feature 201916..202212
/locus_tag="CDBI1_00795"
/note="Likely ribonuclease with RNase H fold; Region:
YqgFc; smart00732"
/db_xref="CDD:128971"
misc_feature 202909..203112
/locus_tag="CDBI1_00795"
/note="S1_like: Ribosomal protein S1-like RNA-binding
domain. Found in a wide variety of RNA-associated
proteins. Originally identified in S1 ribosomal protein.
This superfamily also contains the Cold Shock Domain
(CSD), which is a homolog of the S1 domain; Region:
S1_like; cl09927"
/db_xref="CDD:209094"
misc_feature order(202933..202935,202957..202959,202987..202989,
202993..202995)
/locus_tag="CDBI1_00795"
/note="RNA binding site [nucleotide binding]; other site"
/db_xref="CDD:88416"
gene 203272..204438
/locus_tag="CDBI1_00800"
/db_xref="GeneID:12215828"
CDS 203272..204438
/locus_tag="CDBI1_00800"
/note="COG1228 Imidazolonepropionase and related
amidohydrolases"
/codon_start=1
/transl_table=11
/product="amidohydrolase"
/protein_id="YP_006197328.1"
/db_xref="GI:384359476"
/db_xref="GeneID:12215828"
/translation="MIFIKNGKINTITNGIIHGDILIDEGKIIEIGEDLIAPLDVEVI
DASNKLVFPGFIDAHTHLGLWEDGIGFEGADGNEETDPITPQLNPIDGINPMDRTFKE
AFEGGITSVCTTPGSANVMGGQCIAIKTCGKRIDKMVIKNPVASKIAFGENPKSCYGQ
DDKSPQTRMAIAALLRENLKKAEEYLEDIDMYESHDDEDCEKPEYDIKMESLIPVLRR
EIPFKAHAHRADDMFTAIRIAKEFNLKLTLDHCTEGHLIVDELVEEGFPVIVGPSLSE
RSKFELRNLTFNTAGILSNAGLDVCIMTDHPVIPVQYLPICAGIAVKHGMKEEKAIES
ITINPAKTLGIEDRVGSIEVGKDADLVIWDNSPLEIQSNVLYTIINGKVVYEKK"
misc_feature 203383..204426
/locus_tag="CDBI1_00800"
/note="Metallo-dependent hydrolases, subgroup C is part of
the superfamily of metallo-dependent hydrolases, a large
group of proteins that show conservation in their
3-dimensional fold (TIM barrel) and in details of their
active site. The vast majority of the...; Region:
Met_dep_hydrolase_C; cd01309"
/db_xref="CDD:30052"
misc_feature 203404..204354
/locus_tag="CDBI1_00800"
/note="Amidohydrolase; Region: Amidohydro_4; pfam13147"
/db_xref="CDD:205328"
misc_feature order(203446..203448,203452..203454,203944..203946,
204019..204021,204184..204186)
/locus_tag="CDBI1_00800"
/note="active site"
/db_xref="CDD:30052"
gene 204740..205345
/locus_tag="CDBI1_00805"
/db_xref="GeneID:12215829"
CDS 204740..205345
/locus_tag="CDBI1_00805"
/note="COG3601 Predicted membrane protein"
/codon_start=1
/transl_table=11
/product="riboflavin transporter"
/protein_id="YP_006197329.1"
/db_xref="GI:384359477"
/db_xref="GeneID:12215829"
/translation="MQNTAKRGNMISTRTLVVMSILSAISYLLMFIQAPIPGIFPDFL
KIDLSDIPAIFGGMSLGPLVGFGIVVVKNVLQAITATTTGGIGEFANILIGGSYVMIL
CYSYKRSGDLKGVLIGFVLGTISMTIIGSLVNYFVMLPLYGQLMGLDAIIGLGSAINP
QVHDLFTFVIWMIAPFNVLKAVIISLVTLPLYKKMGNIIKK"
misc_feature 204767..205342
/locus_tag="CDBI1_00805"
/note="ECF-type riboflavin transporter, S component;
Region: ECF-ribofla_trS; cl01942"
/db_xref="CDD:211450"
misc_feature 204779..205315
/locus_tag="CDBI1_00805"
/note="Protein of unknown function (DUF3816); Region:
DUF3816; pfam12822"
/db_xref="CDD:205090"
gene 205674..206714
/locus_tag="CDBI1_00810"
/db_xref="GeneID:12215830"
CDS 205674..206714
/locus_tag="CDBI1_00810"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197330.1"
/db_xref="GI:384359478"
/db_xref="GeneID:12215830"
/translation="MHLSKKIKKLFLDDKGYYFNSNWEDIHIGIYDTKLGDSLKYITN
EYIENMERVKYDYRELKNIENQTDGMCILAIRQNYKALEYVKNQTEELCLEAIKYNYK
ALEYVKEQTEYLCLEAIKKDCNALKYVRNKTEGLIIKAISHSSNIDVVSILKALETQT
RRICLEAIKKDGRCLAYVREQSEELCIEAIKQNYKALKYVKNQTEKMCIESVRQNGMA
LQYVNKQTDKICIEAVKQDGRSLQFVNNKTEEICINAIRYLNKKYNIKDVLSYIDKYT
EDICIEIVRQNGKMLMYIKNQTEKMCIEAVKENYKSLKYVKEQSERICKEALKQNHKA
KEYVKIAIDDCI"
misc_feature 205941..206069
/locus_tag="CDBI1_00810"
/note="Domain of unknown function (DUF4116); Region:
DUF4116; pfam13475"
/db_xref="CDD:205653"
misc_feature 206154..206279
/locus_tag="CDBI1_00810"
/note="Domain of unknown function (DUF4116); Region:
DUF4116; pfam13475"
/db_xref="CDD:205653"
misc_feature 206220..206345
/locus_tag="CDBI1_00810"
/note="Domain of unknown function (DUF4116); Region:
DUF4116; pfam13475"
/db_xref="CDD:205653"
misc_feature 206286..206414
/locus_tag="CDBI1_00810"
/note="Domain of unknown function (DUF4116); Region:
DUF4116; pfam13475"
/db_xref="CDD:205653"
gene 206853..207305
/locus_tag="CDBI1_00815"
/db_xref="GeneID:12215831"
CDS 206853..207305
/locus_tag="CDBI1_00815"
/note="COG0802 Predicted ATPase or kinase"
/codon_start=1
/transl_table=11
/product="ATP/GTP hydrolase"
/protein_id="YP_006197331.1"
/db_xref="GI:384359479"
/db_xref="GeneID:12215831"
/translation="MAKIYLENENKTREIGYKLGKLLKEGSVICLVGDLGAGKTTMTQ
SLADSLGIEDYITSPTFTIINEYEGKIPLYHFDVYRIGSSDEMYDIGYDEYVNSNGIC
IIEWANLIEDILPKEYLNIELRYKDEGREMILTPKGEFYKEIVEELIK"
misc_feature 206859..207296
/locus_tag="CDBI1_00815"
/note="Predicted ATPase or kinase [General function
prediction only]; Region: COG0802"
/db_xref="CDD:31145"
gene 207305..208021
/locus_tag="CDBI1_00820"
/db_xref="GeneID:12215832"
CDS 207305..208021
/locus_tag="CDBI1_00820"
/note="'COG1214 Inactive homolog of metal-dependent
proteases, putative molecular chaperone'"
/codon_start=1
/transl_table=11
/product="glycoprotease"
/protein_id="YP_006197332.1"
/db_xref="GI:384359480"
/db_xref="GeneID:12215832"
/translation="MKILGMDTSSMAASVAVVEDDNLICEFTVNNKKTHSQKLMPMIE
NMLSMSDLSIKDMDLLAVCIGPGSFTGLRIGMATVKAMAHVNNIPIIAVNSLESLANN
INFCDRKICCILDAQKNQVYSAKYKFENGEMIELDGVDVVEFDALVDEIVSTNEEFII
VGEAVYKYKDKLENIKNIKIPSPANNVSNAGSLCSLALNKYNKNIDVHTCYTINPMYI
RKSQAEVQYDEKMKRLNNGR"
misc_feature 207311..207961
/locus_tag="CDBI1_00820"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:214262"
misc_feature 207401..>207916
/locus_tag="CDBI1_00820"
/note="Glycoprotease family; Region: Peptidase_M22;
pfam00814"
/db_xref="CDD:201456"
gene 208011..208487
/locus_tag="CDBI1_00825"
/db_xref="GeneID:12215833"
CDS 208011..208487
/locus_tag="CDBI1_00825"
/note="COG0456 Acetyltransferases"
/codon_start=1
/transl_table=11
/product="putative ribosomal-protein-alanine
acetyltransferase"
/protein_id="YP_006197333.1"
/db_xref="GI:384359481"
/db_xref="GeneID:12215833"
/translation="MEDNTKLIVDDIKIEEMTTEDIDEVFEVEKNCFEDYWSKESFRK
ELSNEVARYIVAKLNGKIVGYVGIWLILDEGHINNVAVHSDYRGKKIGDKLIKCIVDL
CKDNNIASMTLEVRASNKIAQNLYRKYGFKMGGIRKEYYSDNKEDAIIMWNQLKEV"
misc_feature 208071..208463
/locus_tag="CDBI1_00825"
/note="ribosomal-protein-alanine acetyltransferase;
Region: rimI; TIGR01575"
/db_xref="CDD:162430"
misc_feature 208167..208352
/locus_tag="CDBI1_00825"
/note="N-Acyltransferase superfamily: Various enzymes that
characteristically catalyze the transfer of an acyl group
to a substrate; Region: NAT_SF; cd04301"
/db_xref="CDD:173926"
misc_feature order(208248..208256,208284..208289)
/locus_tag="CDBI1_00825"
/note="Coenzyme A binding pocket [chemical binding]; other
site"
/db_xref="CDD:173926"
gene 208493..209509
/locus_tag="CDBI1_00830"
/db_xref="GeneID:12215834"
CDS 208493..209509
/locus_tag="CDBI1_00830"
/note="COG0533 Metal-dependent proteases with possible
chaperone activity"
/codon_start=1
/transl_table=11
/product="UGMP family protein"
/protein_id="YP_006197334.1"
/db_xref="GI:384359482"
/db_xref="GeneID:12215834"
/translation="MSDIITLAIESSCDETAASVLKNGREVLSNIISTQIETHKKFGG
VVPEVASRKHVENIDIVVQEALDKANIGFNDIDHIAVTYGPGLVGALLVGLSYAKALA
YTLNIPLVGVNHIEGHLSANYIEHKDLKPPFITLIVSGGHTHLVEVKDYGKYEILGKT
RDDASGEAFDKISRAMNLGYPGGPIIDNLAKNGNKHAIEFPRAYLEEDSYDFSFSGLK
SSVLNYLNGKRMKNEEIVVEDVAASFQEAVVEVLSNKALKAVKDKGYNIITLSGGVAS
NSGLRAKITELAKDNGITVKYPPLILCTDNAAMIGCAGYYNFINGKTHDMSLNAVPNL
KINQ"
misc_feature 208502..209500
/locus_tag="CDBI1_00830"
/note="UGMP family protein; Validated; Region: PRK09604"
/db_xref="CDD:181984"
misc_feature 208508..>208831
/locus_tag="CDBI1_00830"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:214262"
gene 209806..212514
/locus_tag="CDBI1_00835"
/db_xref="GeneID:12215835"
CDS 209806..212514
/locus_tag="CDBI1_00835"
/note="COG1882 Pyruvate-formate lyase"
/codon_start=1
/transl_table=11
/product="4-hydroxyphenylacetate decarboxylase catalytic
subunit"
/protein_id="YP_006197335.1"
/db_xref="GI:384359483"
/db_xref="GeneID:12215835"
/translation="MSQSKEDKIRSILEAKNIKSNFQNKENLSEFNEKKASKRAEDLL
DVYYNTLSTADMEFPYWYNREYRKSDGDIPVVRRAKALKAAFSHMTPNIIPGEKIVMQ
KTRHYRGSFPMPWVSESFFVAQGEQMREEAKKLASNTADELTKFGSGGGNVTESFGNV
VSIAGKFGMRKEEVPVLVKMAKEWVGKSVEDLGFHYEKMMPDYDLKENLMSTLICMFD
SGYTLPQGREVINYFYPLNYGLDGIIEMAKECKKAVAGNASGDGLIGMDRLYFYEAVI
QVIEGLQTWILNYAKHAKYLESIETDLEAKKEYSDLVEILEHIAHKQPRTFREALQLT
YTIHIASVNEDAISGMSIGRFGQILYPWYEQDIEKGLITKEEVIELLELYRIKITCID
CFASAGVNGGVLSGNTFNTLSIGGLKEDGSTGANELEELLLEASMRCRTPQPSLTMLY
DEKLPEDFLMKAAECTKLGSGYPAWVNNSNGTTFMMKQFADEGMTVEEARAFALGGCL
ETSPGCWKQLTLNGKTYSIAGGAGQSAGSGVHFIANPKILELVLMNGKDHRMNIQVFE
PHNKPLDTYEEVIEVFKDYYKQAINVLERANNIELDIWRKFDTSIINSLLKPDCLDKG
QHIGNMGYRYNATLNVETCGTVTMVNSFAALKKLVYDDKAFTIEEMKDAILNNFGFKD
ALEVGNYSMADQVKVDKTGKYDAIYKACLDAPKYGNNDLYADNILKNYEVWLSKVCEE
AQSLYAKKMYPCQISVSTHGPQGAATLATPDGRLSGTTYSDGSVSAYAGTDKNGVYAL
FESATIWDQAVVQNSQMNLKLHPTTIKGQQGTKKLLDLTRSYLRKGGFHIQYNVVDSE
TLKDAQKNPDNYRQLMVRVAGFTQYWCELGKPIQDEVIARTEYEGV"
misc_feature 209989..212502
/locus_tag="CDBI1_00835"
/note="glycyl radical enzyme, PFL2/glycerol dehydratase
family; Region: PFL2-3; TIGR01774"
/db_xref="CDD:162527"
misc_feature 210031..212499
/locus_tag="CDBI1_00835"
/note="Pyruvate formate lyase 2 and related enzymes;
Region: PFL2_DhaB_BssA; cd01677"
/db_xref="CDD:153086"
misc_feature order(210148..210156,210175..210177,210391..210399,
210409..210414,210421..210432,210601..210606,
210610..210615,211597..211599,211609..211611,
211624..211626,212023..212031,212035..212037)
/locus_tag="CDBI1_00835"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153086"
misc_feature order(210484..210486,210847..210852,211012..211014,
211030..211032,211321..211326,211330..211332,
211417..211419,212065..212067,212071..212073)
/locus_tag="CDBI1_00835"
/note="active site"
/db_xref="CDD:153086"
misc_feature 212425..212439
/locus_tag="CDBI1_00835"
/note="glycine loop; other site"
/db_xref="CDD:153086"
gene 212518..212775
/locus_tag="CDBI1_00840"
/db_xref="GeneID:12215836"
CDS 212518..212775
/locus_tag="CDBI1_00840"
/codon_start=1
/transl_table=11
/product="4-hydroxyphenylacetate decarboxylase regulatory
subunit"
/protein_id="YP_006197336.1"
/db_xref="GI:384359484"
/db_xref="GeneID:12215836"
/translation="MRKHSDCMNFCAVDATKGICRLSKQMINLDDSACPEIKVMPKCK
NCKNFVEANDEGIGKCVGLEKEDWVYSTLNAITCEGHVFNE"
gene 212768..213718
/locus_tag="CDBI1_00845"
/db_xref="GeneID:12215837"
CDS 212768..213718
/locus_tag="CDBI1_00845"
/note="COG1180 Pyruvate-formate lyase-activating enzyme"
/codon_start=1
/transl_table=11
/product="4-hydroxyphenylacetate decarboxylase activating
subunit"
/protein_id="YP_006197337.1"
/db_xref="GI:384359485"
/db_xref="GeneID:12215837"
/translation="MSSQKQLEGMIFDVQSFSVHDGPGCRTTVFLNGCPLSCKWCANP
ESWTVRPHMMFSELSCQYENGCTVCHGKCKNGALSFNLDNKPVIDWNICKDCESFECV
NSCYYNAFKLCAKPYTVDELVQVIKRDSNNWRSNGGVTFSGGEPLLQHEFLHEVLLKC
HEVNIHTAIETSACVSNEVFNKIFKDIDFAFIDIKHMDREKHKEQTGVYNDLILENIS
NLANSDWNGRLVLRVPVISGFNDSAENISDIISFMHKNNLIEINLLPFHRLGESKWIQ
LGKEYEYSDKGDIDEEHLEELQDIFLDNGIACYVGHETAF"
misc_feature 212798..213682
/locus_tag="CDBI1_00845"
/note="glycyl-radical enzyme activating protein family;
Region: PFLE_PFLC; TIGR02494"
/db_xref="CDD:162887"
misc_feature 212822..>212938
/locus_tag="CDBI1_00845"
/note="anaerobic ribonucleotide reductase-activating
protein; Provisional; Region: nrdG; cl15804"
/db_xref="CDD:214252"
gene 214038..215000
/locus_tag="CDBI1_00850"
/db_xref="GeneID:12215838"
CDS 214038..215000
/locus_tag="CDBI1_00850"
/note="COG1266 Predicted metal-dependent membrane
protease"
/codon_start=1
/transl_table=11
/product="membrane-associated CAAX amino terminal
protease"
/protein_id="YP_006197338.1"
/db_xref="GI:384359486"
/db_xref="GeneID:12215838"
/translation="MNKSWSNLIIKNKDKKVRSGWIIITVMAAFYIFEYYLSTILMEI
IRKILIATGDINLKTNYFSEYANWLNDVGLQVVFQILTDSLMIIIPIIVWRFIMKNPI
SEMGLHSYRIKKKEGYVGMLLGIFNCTVIFIITITIGGGHVTSWVPKISPLTVSWILV
FILVAFAEEILNRGFFMAVLRRCKNIYFIMIVPSVIFGLIHIWNPDVTFLSVINIIII
GILFSYMFIKSSNIWMCIGYHFTWNVFQGIIYGMPVSGLQVPGIITTQITHGNLLNGG
MFGIEGGILTTFVNLLSFIFVWYYYRDSKYDFVSDKVNVTNIKN"
misc_feature 214488..214772
/locus_tag="CDBI1_00850"
/note="CAAX protease self-immunity; Region: Abi;
pfam02517"
/db_xref="CDD:202269"
gene complement(215099..216079)
/locus_tag="CDBI1_00855"
/db_xref="GeneID:12215839"
CDS complement(215099..216079)
/locus_tag="CDBI1_00855"
/note="COG1266 Predicted metal-dependent membrane
protease"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197339.1"
/db_xref="GI:384359487"
/db_xref="GeneID:12215839"
/translation="MNLKLIWINILNPVFIKNEIKRKKIQIIIFFFINFGLTYSLGLL
LYYNKFIDPENFASFMMILPLSSVAIAKFYTEGLNNDMYEFYSLIILFFLIYSLLIVL
KLLNLINNNEFIIINLILTFISSLSIIIYSSNKKNLYPVKNIKLGSLLIIYFMISVIV
PTSFILILQGAQPNYSGIIKFIFTPITSLTTIYIFFSEEYAWRGFLQNIFFDKFGKKL
GVIILGMCWSLWHLPLIFTLYTPEAPILGVILRSIHIVGISIFLGYLYIKTKNIWFCA
IIHVLNNSAFLITNSKESTITYHDILIVSMVVLIFYVPFLFTKEYKNNLE"
misc_feature complement(215231..215515)
/locus_tag="CDBI1_00855"
/note="CAAX protease self-immunity; Region: Abi;
pfam02517"
/db_xref="CDD:202269"
gene 217207..217674
/locus_tag="CDBI1_00860"
/db_xref="GeneID:12215919"
CDS 217207..217674
/locus_tag="CDBI1_00860"
/note="COG0346 Lactoylglutathione lyase and related
lyases"
/codon_start=1
/transl_table=11
/product="glyoxalase"
/protein_id="YP_006197340.1"
/db_xref="GI:384359488"
/db_xref="GeneID:12215919"
/translation="MKFLNVLIVVEDIEKSKKFYYDILGLKVICDFGENVVLEGNISL
QEKKLWLEFINKSDSEVKFNGNDAELYFEEDNFDTFVERLSTMKGIDYVHLAIEHRWG
QRAIRFYDLDGHIIEIGETMSSVCRRFLDSGLSIDEVAKRMDVTVEYIESVLE"
misc_feature 217207..217572
/locus_tag="CDBI1_00860"
/note="This domain superfamily is found in a variety of
structurally related metalloproteins, including the type I
extradiol dioxygenases, glyoxalase I and a group of
antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
cl14632"
/db_xref="CDD:214225"
misc_feature order(217219..217221,217231..217233,217309..217311,
217333..217335,217339..217341,217411..217413,
217525..217527,217549..217551,217555..217557)
/locus_tag="CDBI1_00860"
/note="active site"
/db_xref="CDD:211348"
misc_feature order(217219..217221,217411..217413,217555..217557)
/locus_tag="CDBI1_00860"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:211348"
misc_feature 217222..217560
/locus_tag="CDBI1_00860"
/note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
superfamily; Region: Glyoxalase; pfam00903"
/db_xref="CDD:201499"
gene 218845..219558
/locus_tag="CDBI1_00865"
/db_xref="GeneID:12215920"
CDS 218845..219558
/locus_tag="CDBI1_00865"
/note="COG3279 Response regulator of the LytR/AlgR family"
/codon_start=1
/transl_table=11
/product="two-component response regulator"
/protein_id="YP_006197341.1"
/db_xref="GI:384359489"
/db_xref="GeneID:12215920"
/translation="MINIIICEGKKSERVILNDYINTFFYNYNFEYNIKEFENGGDLL
KKYPNNVDIIFMDIDLNDENGFNVSKEIKKFDESVRIIFVSSSNKYIKKGYEIGVYRY
LEKPLKYSLFKEAISSYLKECYKNEAILSIKCKCKIYFIKVDDILYLEVLKNDLTIHT
EKGIYTFKNSMKEIESNLEEHNFFRCHKSYLINLMKVNMLDIENNIVFINQNSIIVSR
YKIKLLREKLNSCLVDVII"
misc_feature 218986..219531
/locus_tag="CDBI1_00865"
/note="Response regulator of the LytR/AlgR family
[Transcription / Signal transduction mechanisms]; Region:
LytT; COG3279"
/db_xref="CDD:33090"
misc_feature <218989..219204
/locus_tag="CDBI1_00865"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(219013..219015,219037..219039,219097..219099,
219148..219150,219157..219162)
/locus_tag="CDBI1_00865"
/note="active site"
/db_xref="CDD:29071"
misc_feature 219013..219015
/locus_tag="CDBI1_00865"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(219022..219027,219031..219039)
/locus_tag="CDBI1_00865"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 219157..219165
/locus_tag="CDBI1_00865"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 219253..219525
/locus_tag="CDBI1_00865"
/note="LytTr DNA-binding domain; Region: LytTR;
smart00850"
/db_xref="CDD:197918"
gene 219831..221603
/locus_tag="CDBI1_00870"
/db_xref="GeneID:12215921"
CDS 219831..221603
/locus_tag="CDBI1_00870"
/note="'COG1132 ABC-type multidrug transport system,
ATPase and permease components'"
/codon_start=1
/transl_table=11
/product="lantibiotic ABC transporter ATP-binding protein"
/protein_id="YP_006197342.1"
/db_xref="GI:384359490"
/db_xref="GeneID:12215921"
/translation="MENGKFQFFKGVRNCFNMIYLHDKRYLFISMFMAIFQGIVPSIS
LLVSQNIINNMQTFSKSVKEILVLLIMYLIINIIPSIFQSFYGYYRIKFNKNFEKHIE
TMMLEKSLTLSLKDFEDDNTYDMINRAQSQKGFNITILSENLISIIRESVSTLSLIVV
LSQFQLWLIIVVIVIPVLKSLYSIKLGKEQYDVSVNRTWKERKAWYIDYLLSKGYAYK
EIMVFRIGSKLINHYKKLKEDIISQDMNIAKKNFIATLLCTVLDSIVSAGIIGFIIIQ
GILKKILIGDATTYIQAVQSIKDNVESIFSLFSSVIQDLFYTDLLFKFLDYNCKEDSI
EHIKIFEKIGDINKIELINISYKYNHSSEYSLKNINLTLNKNDPIAILGKNGSGKTTL
LKILLGFYDDYEGDILINGKNLKDIEKDEYIRKVSCMFQDYIKYEATLKENVAMGDVY
KSNLEEKVKSKLKETKLKPSIYEEDGLETILGTWFGKKQLSMGEWQKVAISRTLMKDA
DMYIFDEPDSSLDSEAGNELLSLYKKTFENKIGIFITHHIQHAKKITNNIVVLENGKL
LESGRHDELMDKKGVYFNLFCNCK"
misc_feature 219903..221591
/locus_tag="CDBI1_00870"
/note="ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms]; Region: MdlB;
COG1132"
/db_xref="CDD:31327"
misc_feature 220875..221525
/locus_tag="CDBI1_00870"
/note="ATP-binding cassette domain of multidrug resistance
protein-like transporters; Region: ABCC_MRP_Like; cd03228"
/db_xref="CDD:213195"
misc_feature 220977..221000
/locus_tag="CDBI1_00870"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213195"
misc_feature order(220986..220991,220995..221003,221121..221123,
221370..221375,221466..221468)
/locus_tag="CDBI1_00870"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213195"
misc_feature 221112..221123
/locus_tag="CDBI1_00870"
/note="Q-loop/lid; other site"
/db_xref="CDD:213195"
misc_feature 221298..221327
/locus_tag="CDBI1_00870"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213195"
misc_feature 221358..221375
/locus_tag="CDBI1_00870"
/note="Walker B; other site"
/db_xref="CDD:213195"
misc_feature 221382..221393
/locus_tag="CDBI1_00870"
/note="D-loop; other site"
/db_xref="CDD:213195"
misc_feature 221454..221474
/locus_tag="CDBI1_00870"
/note="H-loop/switch region; other site"
/db_xref="CDD:213195"
gene 221625..223046
/locus_tag="CDBI1_00875"
/db_xref="GeneID:12215922"
CDS 221625..223046
/locus_tag="CDBI1_00875"
/note="COG0641 Arylsulfatase regulator (Fe-S
oxidoreductase)"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_006197343.1"
/db_xref="GI:384359491"
/db_xref="GeneID:12215922"
/translation="MNQKPFIHTFKAGKSYFIYDVNTDKILKVNAAVYNYLNKIEHNL
EKESDWNIEIEDEINTLINYGFLKNKRVNKTMHPETKYIKYHIENNLSSIILQVTQNC
NLRCDYCIYSGSYSNRVHTNKRMNIDVAKRSIDYLIKNSSQLNEVSVGFYGGEPLLEF
DLIKQIVEYVKVVGEGKEIYFNLTTNATLFNEEIIEFFVKNNITTMISLDGGKEIHDK
SRKFANTGEGSHDVVLKNVRYIKNKYPEYYKKNITFNTVINSENDYISIDDFISKNET
LKDSNFLASTLNNNYSDKEIVSSDEYILGKSYDRFLTLLNKLKFIKDESMSPLSRIER
ALLDDFRYEKNIEGRLELPDVWHHGGPCIPGAFRIFVTTDGEFFPCERVSESSKMGMI
GNLDSGVDIEKAEKLLNIGKLYEEQCSDCWAYSYCDICIAKIDDTKCNENEIKPHDCD
RIRHSTENNMKDYCVLKSLGYQY"
misc_feature 221640..223040
/locus_tag="CDBI1_00875"
/note="Cys-rich peptide radical SAM maturase CcpM; Region:
rSAM_ocin_clost; TIGR04068"
/db_xref="CDD:188583"
misc_feature 221910..>222437
/locus_tag="CDBI1_00875"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(221928..221930,221934..221936,221940..221942,
221946..221954,222078..222080,222084..222089,
222174..222182,222246..222248,222390..222392)
/locus_tag="CDBI1_00875"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 223075..224145
/locus_tag="CDBI1_00880"
/db_xref="GeneID:12215923"
CDS 223075..224145
/locus_tag="CDBI1_00880"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197344.1"
/db_xref="GI:384359492"
/db_xref="GeneID:12215923"
/translation="MEKVLIYPFNYNFFTILNHCNKISDIEINSLVSPSGWGLCNKEY
NVNNIITKVTNDFQSELKKNSLVWFVDSKENLDLEKFIIPKLKVALKEGKKILYTRDD
LNKISRYISHYEFKKINEWNLEKYEIRDIEGISQINTPIIFICGLYGGLDTFDVNIRI
GEELRKRGFSILQFGPKKESYLFKMIPIPEFMFDDSISSKTKIINFNHFIKDKEVEAK
PDLIIIEVPGELFPFSRKMVGNFGIRAFEISNAVINDCGILCIPSSIYDREYCEELKY
FIKGRHGINIDYFSIEKKVIDTYETEVKQKFSYMSLDENFFVEDIEDYEKTFFIHDNK
QLLELVDNIVNQLKEYAKVISI"
misc_feature 223078..224121
/locus_tag="CDBI1_00880"
/note="peptide maturation system protein, TIGR04066
family; Region: nat_prod_clost"
/db_xref="CDD:188581"
gene 224161..224412
/locus_tag="CDBI1_00885"
/db_xref="GeneID:12215924"
CDS 224161..224412
/locus_tag="CDBI1_00885"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197345.1"
/db_xref="GI:384359493"
/db_xref="GeneID:12215924"
/translation="MNYTEKELLLENIFFDVTGINFNKNNNLKKELFFSPSLHIQPRE
LLLVFCEVIENFNIKIPEEKLLNRQFTSFDNVLKIINMV"
misc_feature 224173..224400
/locus_tag="CDBI1_00885"
/note="peptide maturation system acyl carrier-related
protein; Region: ocin_ACP_rel; TIGR04069"
/db_xref="CDD:188584"
gene 224463..224666
/locus_tag="CDBI1_00890"
/db_xref="GeneID:12215925"
CDS 224463..224666
/locus_tag="CDBI1_00890"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197346.1"
/db_xref="GI:384359494"
/db_xref="GeneID:12215925"
/translation="MSFGKRIEMNNIGVETRGVCTIMCPYTCKMMASSSCNCKNNDYN
ARGGSYNTYYNKLIHGQRTPDGM"
gene 225150..225443
/locus_tag="CDBI1_00895"
/db_xref="GeneID:12215926"
CDS 225150..225443
/locus_tag="CDBI1_00895"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197347.1"
/db_xref="GI:384359495"
/db_xref="GeneID:12215926"
/translation="MISMIMMLIGVLFIVFGIILTAVEIKGKMPGFYGVGQNAVRKNA
IGIIAAGIALIFFRNGLDSIDSILTYGVFLVIELVVIGLYFLIRIKYDKDGNL"
gene complement(225575..226924)
/locus_tag="CDBI1_00900"
/db_xref="GeneID:12215927"
CDS complement(225575..226924)
/locus_tag="CDBI1_00900"
/note="COG0531 Amino acid transporters"
/codon_start=1
/transl_table=11
/product="amino acid transporter"
/protein_id="YP_006197348.1"
/db_xref="GI:384359496"
/db_xref="GeneID:12215927"
/translation="MEKAKKLGLFSMILLGINSIIGSGIFLLPGKVYSLAGQNSMFIY
IFATLLVLSILLCFAEVGSMFDKNGGAYLYSKKAFGDFIGFEVGTMSWFIRIISWSTL
AVGFATALGSFWPESATEYKGCIAAILVTLLSINSLFGIKSTKIMNNVITIAKLVPLI
VFVIVGIFFIKFVNIVPSGNVVNSSMGPAIILVFYAFTGFESFIVASGEMENPKKNLP
IALITTIFICAIIYILIQIVCMGILGDRLFENSIPIADASSVFLGNYGKVFISVATLI
SIFGINIGSSIVTPKCGSSLAEEGSLPAFIGKTNKYGAPYVAIIISLICCIPLVLTGS
FEQLAVMSVIARFAQYIPTCLSVIVLRKRTDVKASFKIPFGPVIPMVAILGSLWLLQQ
AWAEDISKPITQNRVLIGLGAMLLIAPLYIFMKKNKEIEHKNKSEDSKLYISREKIQ"
misc_feature complement(225614..226831)
/locus_tag="CDBI1_00900"
/note="Amino acid transporters [Amino acid transport and
metabolism]; Region: PotE; COG0531"
/db_xref="CDD:30877"
misc_feature complement(<226271..226828)
/locus_tag="CDBI1_00900"
/note="Spore germination protein; Region: Spore_permease;
cl15802"
/db_xref="CDD:210202"
gene complement(226961..228181)
/locus_tag="CDBI1_00905"
/db_xref="GeneID:12215928"
CDS complement(226961..228181)
/locus_tag="CDBI1_00905"
/note="COG1473 Metal-dependent
amidase/aminoacylase/carboxypeptidase"
/codon_start=1
/transl_table=11
/product="amidohydrolase/peptidase"
/protein_id="YP_006197349.1"
/db_xref="GI:384359497"
/db_xref="GeneID:12215928"
/translation="MQQALKLKYQTKELGKDFVIESCNSIKPWLINIRRELHKIPELA
LEENLTKQKVISYLKEIGIDYMEFTKHNGIMAYILKESADKTICIRADMDALPIEEEN
NIPYKSIHSGKMHACGHDAHTTMLLGACKVLHSIKDKLNVNVKFLFQPAEEGFGGAKF
LVEDGCLENPKADYIFGLHVMPHIETGLIETKYDTLNASVDTIKISIKGKRAHGAYPE
NGIDAIVTASQIVTSLQTIISRNLEPNNAAVLTIGKIYGGDAHNVICEDVKLEGTLRT
LNSKTRNFMIDKIAKIVGDTASAFGCVGTLHVSDENYPAVINEKELVDTVISSTKELL
GEEKFILRPNPSLGGEDFSFYTEHCKGAFFHLGCKNEEKGLISPLHTSSFNIDEDCLP
IGVMMHVMNTLYFN"
misc_feature complement(226985..228124)
/locus_tag="CDBI1_00905"
/note="Metal-dependent
amidase/aminoacylase/carboxypeptidase [General function
prediction only]; Region: AbgB; COG1473"
/db_xref="CDD:31662"
misc_feature complement(226973..228094)
/locus_tag="CDBI1_00905"
/note="M20 Peptidase Aminoacylase 1 family; Region:
M20_Acy1; cd03886"
/db_xref="CDD:193507"
misc_feature complement(order(227042..227044,227645..227647,
227723..227725,227825..227827,227831..227833))
/locus_tag="CDBI1_00905"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193507"
misc_feature complement(order(227363..227371,227387..227389,
227393..227398,227408..227428,227477..227479,
227486..227488,227495..227497,227507..227512,
227576..227578))
/locus_tag="CDBI1_00905"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:193507"
gene complement(228550..230562)
/locus_tag="CDBI1_00910"
/db_xref="GeneID:12215929"
CDS complement(228550..230562)
/locus_tag="CDBI1_00910"
/note="'COG3829 Transcriptional regulator containing PAS,
AAA-type ATPase, and DNA-binding domains'"
/codon_start=1
/transl_table=11
/product="sigma-54-dependent transcriptional regulator"
/protein_id="YP_006197350.1"
/db_xref="GI:384359498"
/db_xref="GeneID:12215929"
/translation="MKKSVALVNDSRKDLIDFLENNLKLVFGDSININRYFINEINDN
DIINDDVILVMSVERLDKIINNILDKKKVIVVRRTFREDKIYNLLSLPQGTNALIVND
SDETTLETISLFYKIGVTNIRPIPYMNDNNYKNIKIAITPGVPEKVPSFISDIFDLGH
RYIDISTFIEIINLLQIDSKEIQSNLVKYSEEIISLDTGIKDKYKELFLKIEELDTIL
NLSKDGILFTSKDGEINTYNSKVKDILDINEDIYGKYIDDIFVDSLKVLLSEKEILDK
VVVFNKKYINVNKKNIYNRDEKMGTYYSLQEITYIKKLEQNLTKKLREKGQIAKYTFK
DIKTNSPKMFECIDLAKKVSKSDLSILIRGESGTGKELIAQSIHNNSNRKNQPFIAVN
CAAVPENLLESQLFGYDKGTFTGGLKDGKQGLFELANNGTIFLDEIGDMPLELQTKLL
RVLQEKQIMPVGSHNVINIDVRIISATNKNLEQMIDNSQFREDLYYRLNTIPINIPPL
RERKEDILIIMEDLINKKLVITPEAKKLIQNYMWKGNIRELQNVTSYLNIMCEDIVLE
KDLPPNLRSSDNKNTSLKLKYSKNDILNILEILILNKESDVGIGRGLILKALLDKNLQ
ITEGKIKKIFEYLKKEELIICSSGRYGSKITQKGEDFYNKLKYKGL"
misc_feature complement(228844..229944)
/locus_tag="CDBI1_00910"
/note="Transcriptional regulator containing PAS, AAA-type
ATPase, and DNA-binding domains [Transcription / Signal
transduction mechanisms]; Region: RocR; COG3829"
/db_xref="CDD:33622"
misc_feature complement(229042..229503)
/locus_tag="CDBI1_00910"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature complement(229450..229473)
/locus_tag="CDBI1_00910"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature complement(order(229129..229131,229255..229257,
229447..229470))
/locus_tag="CDBI1_00910"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature complement(229252..229269)
/locus_tag="CDBI1_00910"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature complement(229072..229074)
/locus_tag="CDBI1_00910"
/note="arginine finger; other site"
/db_xref="CDD:99707"
gene 231033..231683
/locus_tag="CDBI1_00915"
/db_xref="GeneID:12215930"
CDS 231033..231683
/locus_tag="CDBI1_00915"
/note="COG0664 cAMP-binding proteins - catabolite gene
activator and regulatory subunit of cAMP-dependent protein
kinases"
/codon_start=1
/transl_table=11
/product="cyclic nucleotide-binding protein"
/protein_id="YP_006197351.1"
/db_xref="GI:384359499"
/db_xref="GeneID:12215930"
/translation="MKAEKTSIYPIIKNNLNKISIVEYKKGQRFVASDKDLQEVFFII
EGVALVECTTRGGNKFLVDIVPENEFIGKISYIYEHNLKCDIFAKTNIKLFRFEKNVF
EEFYLKPDFIALFHRKCTRRIYELYKTRMVRELFSCTEVIAYCISNKQENNVCNIKAI
RNFSEIYSISRKSRYHSLLKLTEKEIVKKMGNTYEILNYDELHKLAFEVKEFLEDE"
misc_feature 231060..231626
/locus_tag="CDBI1_00915"
/note="cAMP-binding proteins - catabolite gene activator
and regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms]; Region: Crp; COG0664"
/db_xref="CDD:31008"
misc_feature 231078..231347
/locus_tag="CDBI1_00915"
/note="effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
cd00038"
/db_xref="CDD:28920"
misc_feature order(231246..231251,231276..231284)
/locus_tag="CDBI1_00915"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:28920"
gene complement(231823..233199)
/locus_tag="CDBI1_00920"
/db_xref="GeneID:12215931"
CDS complement(231823..233199)
/locus_tag="CDBI1_00920"
/note="COG0534 Na+-driven multidrug efflux pump"
/codon_start=1
/transl_table=11
/product="drug/sodium antiporter"
/protein_id="YP_006197352.1"
/db_xref="GI:384359500"
/db_xref="GeneID:12215931"
/translation="MQELFSLKDENKRFYKILLSLCIPIIIQNLISTSVNVIDTIMIS
SLGETSVASVGVANQFFFLFNMSLSGITGGAGVFISQFYGKKDVSNIRKVTGLTCVLA
IVLSFVFVIPALLTPKPIIHIFSYDSEVVKLCIDYFSIAVFSYPLIAVSTVFSTGSRG
VRNPKLGMICSAFALVTNVILNYGFIFGNFGLPALGVKGAALATVIARICELILMITY
VYLYKKDYILKFGLKNLKAIDKIFIKSFSSKSFPIFVNDSVWAIGTVLYSVAYARAGT
SAIAASQIATSTGNFFIMTAVCIASGASIMLGNELGADHIKRAIEYAKKFSILVFSAG
LILGIILILNIPLLLKMFSVSDSLASDITKIFFIMGILMALKSFNTLVIIGILRSGGD
TKYALFLELGCMWLASIPLTFIAAFKGAPIFVLVLLTYSEEVVKFIFGVPRALSKKWA
INIVKEID"
misc_feature complement(231832..233199)
/locus_tag="CDBI1_00920"
/note="Na+-driven multidrug efflux pump [Defense
mechanisms]; Region: NorM; COG0534"
/db_xref="CDD:30880"
misc_feature complement(232651..233130)
/locus_tag="CDBI1_00920"
/note="MatE; Region: MatE; pfam01554"
/db_xref="CDD:190033"
misc_feature complement(231958..>232332)
/locus_tag="CDBI1_00920"
/note="MatE; Region: MatE; cl10513"
/db_xref="CDD:209159"
gene complement(233215..235128)
/locus_tag="CDBI1_00925"
/db_xref="GeneID:12215932"
CDS complement(233215..235128)
/locus_tag="CDBI1_00925"
/note="COG0488 ATPase components of ABC transporters with
duplicated ATPase domains"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_006197353.1"
/db_xref="GI:384359501"
/db_xref="GeneID:12215932"
/translation="MIVLSCNNLNKSFGIDSILENISFTVNEGDKIGIIGVNGTGKTT
LFKIISGIYGYDSGDIYTSKDCEIGYLEQNTNFYSDNTILEEVLEVFKNLIEMESYLR
ELEVKISEESTKTNSPIIEKIMDEYSHKLELFSDLNGYGYKSEAKGVLKGLGFSDNDM
DKPISILSGGEKTRVLLGKLLLKKPTLLLLDEPTNHLDSEAIEWLEVFLKQYKGTVML
ISHDRYFLDQSVNRIFEVHNKKLKVYNGNYSKFVELSKIEKELELKKFEDQQKEIKKQ
EESIERLKAYGREKHLKRARSKEKALDKVDVLDKPEAYRKKARIQFTPSVQSGNDVLQ
IRDVSMGYGERILFKDLDLDIYRGEKVALIGANGVGKSTLFKIITNELQPLSGNIKFG
TNVHVSYFHQEQKTLNLDNTIIDEIWENNTHLTQTTLRNMLGAFLFVDEEVFKKISTL
SGGERARVAILKLILSNANLLLLDEPTNHLDIDSKEVLEEALTNYDGTIFTISHDRYF
LNTVVDKILVLDENGITEYLGNYDYYIDKKRQIQEMSIIEEKEEKTRTQIKDEKRKER
EQREIEKKNRIKRQNIEKEIEKLEIEIEKLDILLCQEEVYSNPDKAKEVSQEKINLEN
NLASLYDEWEEFM"
misc_feature complement(233509..235128)
/locus_tag="CDBI1_00925"
/note="ATPase components of ABC transporters with
duplicated ATPase domains [General function prediction
only]; Region: Uup; COG0488"
/db_xref="CDD:30834"
misc_feature complement(<234910..235119)
/locus_tag="CDBI1_00925"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
misc_feature complement(234409..>234630)
/locus_tag="CDBI1_00925"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
misc_feature complement(234163..234429)
/locus_tag="CDBI1_00925"
/note="ABC transporter; Region: ABC_tran_2; pfam12848"
/db_xref="CDD:205105"
misc_feature complement(233560..234132)
/locus_tag="CDBI1_00925"
/note="ATP-binding cassette domain of elongation factor 3,
subfamily F; Region: ABCF_EF-3; cd03221"
/db_xref="CDD:213188"
gene 235264..235896
/locus_tag="CDBI1_00930"
/db_xref="GeneID:12215933"
CDS 235264..235896
/locus_tag="CDBI1_00930"
/note="COG2344 AT-rich DNA-binding protein"
/codon_start=1
/transl_table=11
/product="redox-sensing transcriptional repressor Rex"
/protein_id="YP_006197354.1"
/db_xref="GI:384359502"
/db_xref="GeneID:12215933"
/translation="MLGNKNISMAVIRRLPKYHRYLGDLLDRDIQRISSKELSDIIGF
TASQIRQDLNNFGGFGQQGYGYNVEALHTEIGKILGLDRPYNAVLVGAGNLGQAIANY
AGFRKAGFEIKALFDANPRMIGLKIREFEVLDSDTLEDFIKNNNIDIAVLCIPKNGAQ
EVINRVVKAGIKGVWNFAPLDLEVPKGVIVENVNLTESLFTLSYLMKEGK"
misc_feature 235264..235893
/locus_tag="CDBI1_00930"
/note="redox-sensing transcriptional repressor Rex;
Provisional; Region: PRK05472"
/db_xref="CDD:180107"
misc_feature 235276..235422
/locus_tag="CDBI1_00930"
/note="Putative DNA-binding protein N-terminus; Region:
Put_DNA-bind_N; pfam06971"
/db_xref="CDD:203556"
misc_feature 235507..235800
/locus_tag="CDBI1_00930"
/note="CoA binding domain; Region: CoA_binding; pfam02629"
/db_xref="CDD:202320"
gene 236044..236574
/locus_tag="CDBI1_00935"
/db_xref="GeneID:12215934"
CDS 236044..236574
/locus_tag="CDBI1_00935"
/note="COG2191 Formylmethanofuran dehydrogenase subunit E"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197355.1"
/db_xref="GI:384359503"
/db_xref="GeneID:12215934"
/translation="MEELWKKAIEFHGHECPGLAIGFKAALAARKYLGCKQSGDEEIV
CISENDACGIDGIQVVLSCTMGKGNLLLRMTGKSVYHFFNRENGKSIRIYVKSKPFQM
DREGYKKYLLESDFEEIFEITDTKLRLPEKARIFKSLKCEVCGEFASEQYIRIEEGKK
VCLDCFNKYERFYEEY"
misc_feature 236047..236550
/locus_tag="CDBI1_00935"
/note="Formylmethanofuran dehydrogenase subunit E [Energy
production and conversion]; Region: COG2191"
/db_xref="CDD:32374"
misc_feature 236071..236406
/locus_tag="CDBI1_00935"
/note="FmdE, Molybdenum formylmethanofuran dehydrogenase
operon; Region: FmdE; pfam02663"
/db_xref="CDD:202336"
misc_feature 236464..236556
/locus_tag="CDBI1_00935"
/note="Prokaryotic dksA/traR C4-type zinc finger; Region:
zf-dskA_traR; pfam01258"
/db_xref="CDD:201690"
gene complement(236750..236920)
/locus_tag="CDBI1_00940"
/db_xref="GeneID:12215935"
CDS complement(236750..236920)
/locus_tag="CDBI1_00940"
/note="COG1145 Ferredoxin"
/codon_start=1
/transl_table=11
/product="ferredoxin"
/protein_id="YP_006197356.1"
/db_xref="GI:384359504"
/db_xref="GeneID:12215935"
/translation="MAYKITDACISCGACEAECPVSCISAGDDAYVIDAGSCIDCGSC
AGACPVDAPQPE"
misc_feature complement(236774..236914)
/locus_tag="CDBI1_00940"
/note="4Fe-4S dicluster domain; Region: Fer4_10;
pfam13237"
/db_xref="CDD:205417"
misc_feature complement(<236762..>236911)
/locus_tag="CDBI1_00940"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
gene 237205..238272
/locus_tag="CDBI1_00945"
/db_xref="GeneID:12215936"
CDS 237205..238272
/locus_tag="CDBI1_00945"
/note="COG2843 Putative enzyme of poly-gamma-glutamate
biosynthesis (capsule formation)"
/codon_start=1
/transl_table=11
/product="lipoprotein"
/protein_id="YP_006197357.1"
/db_xref="GI:384359505"
/db_xref="GeneID:12215936"
/translation="MKNKLVYICIMSLLLFVVGCSNNPNKESTIKKDSKNNQSQVKEE
KREPVKKDITISFAGDVTMGNYKGSSYYGSFDHEFKRQGEDYNYFLKNVKPVFEKDDL
TVVNLEGPLTTASNAKEKKFAFKGKPGYVNILKSGSIEAVSIANNHSEDYFEEGMKDT
QFILDENKINYFGLGKDAVVDVKGIKVGLLGYNGLSTEYNEKNLKQMEDDIKSLKKKS
DVVVVYFHWGIELDYYPDKKQKDFAHYAIDKGADLVMGSHPHVIQGIEKYKNKYIAYS
LGNFCFGGNKNPSDTDSYIYQQTFTFSDNKLTSIKEPNIIPTSITSSSSRNNYQPKVL
DGSEKDRVLNKLEKISKDLNK"
misc_feature 237364..238053
/locus_tag="CDBI1_00945"
/note="Bacterial capsule synthesis protein PGA_cap;
Region: PGA_cap; smart00854"
/db_xref="CDD:197922"
misc_feature 237367..238050
/locus_tag="CDBI1_00945"
/note="CapA and related proteins, metallophosphatase
domain; Region: MPP_CapA; cd07381"
/db_xref="CDD:163624"
misc_feature order(237382..237384,237388..237390,237526..237528,
237643..237648,237880..237882,237976..237978,
237982..237984)
/locus_tag="CDBI1_00945"
/note="putative active site [active]"
/db_xref="CDD:163624"
misc_feature order(237382..237384,237388..237390,237526..237528,
237643..237645,237880..237882,237976..237978,
237982..237984)
/locus_tag="CDBI1_00945"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:163624"
gene 238442..240343
/locus_tag="CDBI1_00950"
/db_xref="GeneID:12215937"
CDS 238442..240343
/locus_tag="CDBI1_00950"
/note="COG1151 6Fe-6S prismane cluster-containing protein"
/codon_start=1
/transl_table=11
/product="oxidoreductase, acetyl-CoA synthase subunit"
/protein_id="YP_006197358.1"
/db_xref="GI:384359506"
/db_xref="GeneID:12215937"
/translation="MACNTCKMCESADKKLESFVASKDVETAFHRTEDQKVKCGFGLQ
GVCCRLCSNGPCRVTPKSPRGICGADADTIVARNFLRAVASGAACYLHVVENTAKNLK
NVGITKGVVKGEKTLNQLAEMFGIESDEKYDKCIKVADKVINDLYKSRDDKMELVEKI
AYAPRVKKWKELGIMPGGAKSEVFDAIVKSSTNLNSDPVDMLVNCLNLGISTGLYGLT
LTNLLNDVMLGEPVIRMAPVGFNVIDPDYINIMITGHQHSTFANFQDRLKDEDVIKLA
QSVGAKGFKLVGCTCVGQDLQLRGEHYQEVFAGHAGNNFTSEAVLSTGAIDIVLSEFN
CTIPGLEPIADKYKVKMVCLDDVAKKANAEYIGLDRSKLDELSNTLIEKALESYKERR
GSIEIDIPKDHGFEQSLTGVSEKNLKAFLGDSWKPLINLIAEGKIKGVAAVVGCSNMT
AGGHDVNTVELTKELIKKDIIVLSAGCSTGGLENVGLMSPGAEELAGENLKEVCKTLG
IPPVLNFGPCLAIGRLEIVATELAAELGIDLPQLPLVLSAPQWLEEQALADGAFGLAL
GLPLHLALPPFITGGKLVTEVLTEKLKDLTGGHVIVNPDPKSSANQLEEIIIDRRKNL
GLKDVECNA"
misc_feature 238466..240319
/locus_tag="CDBI1_00950"
/note="carbon-monoxide dehydrogenase, catalytic subunit;
Region: CO_DH_cata; TIGR01702"
/db_xref="CDD:130763"
misc_feature 238496..240319
/locus_tag="CDBI1_00950"
/note="The HCP family of iron-sulfur proteins includes
hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
and carbon monoxide dehydrogenase (CODH), all of which
contain [Fe4-S4] metal clusters at their active sites.
These proteins have a conserved...; Region: HCP_like;
cl14655"
/db_xref="CDD:187409"
misc_feature order(238685..238687,238691..238696,238703..238708,
240101..240106)
/locus_tag="CDBI1_00950"
/note="ACS interaction site; other site"
/db_xref="CDD:73219"
misc_feature order(238694..238696,238703..238705,238715..238717,
238724..238726,240098..240106)
/locus_tag="CDBI1_00950"
/note="CODH interaction site; other site"
/db_xref="CDD:73219"
misc_feature order(239777..239779,239870..239872,239993..239995,
240098..240100,240104..240106)
/locus_tag="CDBI1_00950"
/note="metal cluster binding site [ion binding]; other
site"
/db_xref="CDD:73219"
gene 240336..240809
/locus_tag="CDBI1_00955"
/db_xref="GeneID:12215938"
CDS 240336..240809
/locus_tag="CDBI1_00955"
/note="COG1142 Fe-S-cluster-containing hydrogenase
components 2"
/codon_start=1
/transl_table=11
/product="oxidoreductase, electron transfer subunit"
/protein_id="YP_006197359.1"
/db_xref="GI:384359507"
/db_xref="GeneID:12215938"
/translation="MHRIFINKDLCTGCKSCVLACMLKHNKDYDMYTLDLENIDNDSR
GHIELDSKHNNPVPILCRHCDEPECVLACMSGAMHKDSESGIVSYDEEKCGSCYMCVM
SCPYGLLKPDDRSKQNILKCDLCKDEEYPRCVANCPSGAIELQKEENDELCSVRG"
misc_feature 240504..240770
/locus_tag="CDBI1_00955"
/note="4Fe-4S dicluster domain; Region: Fer4_11;
pfam13247"
/db_xref="CDD:205427"
misc_feature <240609..240782
/locus_tag="CDBI1_00955"
/note="RPB11 and RPB3 subunits of RNA polymerase; Region:
RNAP_RPB11_RPB3; cl11409"
/db_xref="CDD:209307"
gene 240784..242010
/locus_tag="CDBI1_00960"
/db_xref="GeneID:12215939"
CDS 240784..242010
/locus_tag="CDBI1_00960"
/note="COG0446 Uncharacterized NAD(FAD)-dependent
dehydrogenases"
/codon_start=1
/transl_table=11
/product="oxidoreductase, NAD/FAD binding subunit"
/protein_id="YP_006197360.1"
/db_xref="GI:384359508"
/db_xref="GeneID:12215939"
/translation="MNYVVLGASAAGINAVKTLRELDKDSNIVVISKDENVYSRCMLH
HVISEHRTLKQINFVDEDFMEQNNVKWIAGKTVKGIDINKKVVQTEDITVNYDKLLIA
TGASSAIPPIKNLRDGNFVYSVRNIDDIYKIKEKAQNSKNVVIIGAGLVGIDALVGLF
KYEQLNISVAFMEKYILDRQLDEYTASVYENKFKEKGVKFYPSASIQEIVLDNSKNVT
GVAFSNGEVLDADMVIVATGVKPNADFLDGTGIEYDRGIIIDDMCQTTQKDIYAAGDV
VGKNAIWPLAVKQGIVAAYNMVGKDKKIEDEFAFKNSMNFMDIPTISIGMNTPVDDSY
KVLTRHGINDYKKFVFKDNVIYGAVIQGDISYVGVLTYLIKNKVEIYDLENRIFDVCY
ADFFNIKENGEFCYSV"
misc_feature 240787..241617
/locus_tag="CDBI1_00960"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox_2; pfam07992"
/db_xref="CDD:203833"
misc_feature 241207..241458
/locus_tag="CDBI1_00960"
/note="Pyridine nucleotide-disulphide oxidoreductase;
Region: Pyr_redox; pfam00070"
/db_xref="CDD:200974"
gene complement(242149..243336)
/locus_tag="CDBI1_00965"
/db_xref="GeneID:12215940"
CDS complement(242149..243336)
/locus_tag="CDBI1_00965"
/note="COG2230 Cyclopropane fatty acid synthase and
related methyltransferases"
/codon_start=1
/transl_table=11
/product="cyclopropane-fatty-acyl-phospholipid synthase"
/protein_id="YP_006197361.1"
/db_xref="GI:384359509"
/db_xref="GeneID:12215940"
/translation="MNITKNFLKDYLEKFGETPFLVRLKDEEEFLIGEGSPQFKVIVN
NDISKSELLKSTSLALGEAYINRDIEVEGDLFLTLNLLLKQIDKFNIDNSAVKHLLHS
SNSMRHQKKEIHAHYDIGNDFYSLWLDKTLSYSCAYFRNDNDTLYDAQVNKVHHILTK
LNLEEGMSLLDIGCGWGFLLIEAAKKYKIHGVGITLSEEQFKEFNARIKEENLQDYLE
VRLMDYRELKKSDLMFDRVVSVGMLEHVGRENYELFIKNVNAVLKDGGLFLLHYISGL
QESYGDPWIKKYIFPGGVIPSLREMIHICSDYKYHTIDVESLRLHYVKTLLYWQKSFS
ENLPKIKEMFDDKFIRMWDLYLCSCAAAFNTGIIDIHQILFTKGIKNDLPLTREYMYN
CSK"
misc_feature complement(242206..243027)
/locus_tag="CDBI1_00965"
/note="Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane]; Region: Cfa; COG2230"
/db_xref="CDD:32411"
misc_feature complement(242518..242832)
/locus_tag="CDBI1_00965"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature complement(order(242617..242619,242665..242673,
242749..242754,242803..242823))
/locus_tag="CDBI1_00965"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 243609..244433
/locus_tag="CDBI1_00970"
/db_xref="GeneID:12215941"
CDS 243609..244433
/locus_tag="CDBI1_00970"
/note="'COG0444 ABC-type dipeptide/oligopeptide/nickel
transport system, ATPase component'"
/codon_start=1
/transl_table=11
/product="ATP-binding protein"
/protein_id="YP_006197362.1"
/db_xref="GI:384359510"
/db_xref="GeneID:12215941"
/translation="MEVYALVGSSGTGKSFKALEFAYENDIEYIIDDGILIYKNKVLA
GISAKQANTTIEAVKRAIFYNLEHRQEVREAIKKENIRKILIIGTSKKMVNQIVERLS
IGRVCKFINIQDISTKYEIEIAKQARKEGNHVIPVPAVEIKSMASGLSINSLKRLFRK
GNNRNMVVLEKTIIRPTFSYIGKFYISADVIKQIIEYEVYNFGSIDRINKINIENCNN
FMNIFVSININDLETIKKIEDIQQTIKKSIEKMTLVNVQKIDINIHKIKKINFLQC"
misc_feature <243672..243842
/locus_tag="CDBI1_00970"
/note="Pyruvate ferredoxin/flavodoxin oxidoreductase;
Region: POR; cl00546"
/db_xref="CDD:207101"
gene 244562..245827
/locus_tag="CDBI1_00975"
/db_xref="GeneID:12215942"
CDS 244562..245827
/locus_tag="CDBI1_00975"
/note="COG0334 Glutamate dehydrogenase/leucine
dehydrogenase"
/codon_start=1
/transl_table=11
/product="glutamate dehydrogenase, NAD-specific"
/protein_id="YP_006197363.1"
/db_xref="GI:384359511"
/db_xref="GeneID:12215942"
/translation="MSGKDVNVFEMAQSQVKNACDKLGMEPAVYELLKEPMRVIEVSI
PVKMDDGSIKTFKGFRSQHNDAVGPTKGGIRFHQNVSRDEVKALSIWMTFKCSVTGIP
YGGGKGGIIVDPSTLSQGELERLSRGYIDGIYKLIGEKVDVPAPDVNTNGQIMSWMVD
EYNKLTGQSSIGVITGKPVEFGGSLGRTAATGFGVAVTAREAAAKLGIDMKKAKIAVQ
GIGNVGSYTVLNCEKLGGTVVAMAEWCKSEGSYAIYNENGLDGQAMLDYMKEHGNLLN
FPGAKRISLEEFWASDVDIVIPAALENSITKEVAESIKAKLVCEAANGPTTPEADEVF
AERGIVLTPDILTNAGGVTVSYFEWVQNLYGYYWSEEEVEQKEEIAMVKAFESIWKIK
EEYNVTMREAAYMHSIKKVAEAMKLRGWY"
misc_feature 244580..245824
/locus_tag="CDBI1_00975"
/note="Glutamate dehydrogenase/leucine dehydrogenase
[Amino acid transport and metabolism]; Region: GdhA;
COG0334"
/db_xref="CDD:30682"
misc_feature 244667..245059
/locus_tag="CDBI1_00975"
/note="Glu/Leu/Phe/Val dehydrogenase, dimerisation domain;
Region: ELFV_dehydrog_N; pfam02812"
/db_xref="CDD:202408"
misc_feature 245105..245800
/locus_tag="CDBI1_00975"
/note="NAD(P) binding domain of glutamate dehydrogenase,
subgroup 1; Region: NAD_bind_1_Glu_DH; cd01076"
/db_xref="CDD:133445"
misc_feature order(245222..245230,245288..245293,245459..245464,
245522..245530)
/locus_tag="CDBI1_00975"
/note="NAD(P) binding site [chemical binding]; other site"
/db_xref="CDD:133445"
gene 246020..246676
/locus_tag="CDBI1_00980"
/db_xref="GeneID:12215943"
CDS 246020..246676
/locus_tag="CDBI1_00980"
/note="'COG4219 Antirepressor regulating drug resistance,
predicted signal transduction N-terminal membrane
component'"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197364.1"
/db_xref="GI:384359512"
/db_xref="GeneID:12215943"
/translation="MYFLPPHDYKLEELDWIFGHELMYFKSKDLHLKYLVLFLKIVYW
FNPFIYIMEKYMDLDCELYCDERVLKNCTVQQKQEYALTIVNSMKRGINFSNKFVTGL
NKQSDIRKRVMNMFSEKHKNGILMALIISLFSSITFFKFDSTSLIEENDFLERSRYAF
EGRQEDMFVTIDSTYADAPIKLRKEHEENCRVNGIVPKDSDSIEIIPRFYKDCMDLKK
"
misc_feature <246053..246361
/locus_tag="CDBI1_00980"
/note="Peptidase family M48; Region: Peptidase_M48;
cl12018"
/db_xref="CDD:214202"
gene 247007..248140
/locus_tag="CDBI1_00985"
/db_xref="GeneID:12215944"
CDS 247007..248140
/locus_tag="CDBI1_00985"
/note="'COG4219 Antirepressor regulating drug resistance,
predicted signal transduction N-terminal membrane
component'"
/codon_start=1
/transl_table=11
/product="membrane-associated metalloprotease"
/protein_id="YP_006197365.1"
/db_xref="GI:384359513"
/db_xref="GeneID:12215944"
/translation="MSNFILNGIFRTVIVSSLSILLILIFKKNVFKRFSKKFNYYIWM
IVVIKLFLPFTYYTFTINILRSKKHININNINLEGFNNVSTISNNIILYTWIITVVVY
LIYTIFKYIKLKNLINDLSYDVDDREIVNLYKNILEEFNITKDIKLKYSYEVETPAFF
NSCVLLPPHEYKLKELDWIFRHELMHFKSRDLYLKYVILFLKTVYWFNPFIYIMDKHI
DLDCELYCDERVLKNRNSEEKKDYALTILNAMRKGSNTSNKFIAGLHKQSDIKKRVMN
MFNEKYKNGILMALTLCLLSSITFLKVNSTSIVNLNVLPKGFEDLRTVSSIRFSVIGF
TYADAPKNMREEYKINCESLGLIPKDSDKIEVGVEYYDSLLND"
misc_feature 247100..247834
/locus_tag="CDBI1_00985"
/note="Peptidase family M48; Region: Peptidase_M48;
cl12018"
/db_xref="CDD:214202"
gene 249067..250089
/locus_tag="CDBI1_00990"
/db_xref="GeneID:12215945"
CDS 249067..250089
/locus_tag="CDBI1_00990"
/note="COG3103 SH3 domain protein"
/codon_start=1
/transl_table=11
/product="cell wall hydrolase"
/protein_id="YP_006197366.1"
/db_xref="GI:384359514"
/db_xref="GeneID:12215945"
/translation="MKKKILIPVFASVMALSVSSIVNADEVNDSSQNKDDKTNTELNL
GEYKEVKYKVAKIKDGVAIKIREEGQVQNIAYSGDEFTVLGTQGEWVKVKVEDGEGWL
ATRYVDISEGVGYTNADKVNLRKDKSESSEVIEELEKGSSLLVLEDNGDWLKVKDGET
EGYVKSSYISDKAPVIEEPQVNPSIDQNVDSTNNNQQNNANTNQQNNNSNVPTANSNA
VQAVLNLAYSKQGCPYVWGAEGPNTFDCSGFTQYVYRNAVGKNIPRTSKAQSKYGQTV
SKANLQPGDLVFFTTNGSGSVSHVGIYVGGGNMIHSPSTGKTVSVTSINSSYYTARFV
TAKRIL"
misc_feature 249067..>249624
/locus_tag="CDBI1_00990"
/note="SH3 domain protein [Signal transduction
mechanisms]; Region: COG3103"
/db_xref="CDD:32917"
misc_feature <249295..249387
/locus_tag="CDBI1_00990"
/note="Src Homology 3 domain superfamily; Region: SH3;
cl17036"
/db_xref="CDD:213143"
misc_feature 249421..249576
/locus_tag="CDBI1_00990"
/note="Bacterial SH3 domain; Region: SH3_3; pfam08239"
/db_xref="CDD:116824"
misc_feature <249724..250077
/locus_tag="CDBI1_00990"
/note="Cell wall-associated hydrolases
(invasion-associated proteins) [Cell envelope biogenesis,
outer membrane]; Region: Spr; COG0791"
/db_xref="CDD:31134"
misc_feature 249757..250080
/locus_tag="CDBI1_00990"
/note="NlpC/P60 family; Region: NLPC_P60; pfam00877"
/db_xref="CDD:189752"
gene 250385..251305
/locus_tag="CDBI1_00995"
/db_xref="GeneID:12215946"
CDS 250385..251305
/locus_tag="CDBI1_00995"
/note="'COG0540 Aspartate carbamoyltransferase, catalytic
chain'"
/codon_start=1
/transl_table=11
/product="aspartate carbamoyltransferase"
/protein_id="YP_006197367.1"
/db_xref="GI:384359515"
/db_xref="GeneID:12215946"
/translation="MLKSRNLIQPEDFSIEEIDEILELAQKIIDNPSKYSRICEGKLL
ATLFYEPSTRTRLSFESAMNRLGGRVVGFSEPNSSSASKGETLGDTMRIVSGYVDIIA
MRHPQSGAASEAARYTEVPFINAGDGKNQHPTQTLTDLLTIKSLKGTLESHTIGLCGD
LKYGRTVHSLVKAMARYKNTKFVFIAPEELKMPDYIKEAIKGHAYYETNNLDDVIGSL
DVLYMTRVQQERFEDKSEYERLKNYYILNKAKLEKASKDMLVMHPLPRVNEIDIDVDS
DDRAVYFKQAKYGMYVRMALIIKLLGINED"
misc_feature 250385..251299
/locus_tag="CDBI1_00995"
/note="aspartate carbamoyltransferase catalytic subunit;
Provisional; Region: pyrB; PRK00856"
/db_xref="CDD:179144"
misc_feature 250397..250816
/locus_tag="CDBI1_00995"
/note="Aspartate/ornithine carbamoyltransferase,
carbamoyl-P binding domain; Region: OTCace_N; pfam02729"
/db_xref="CDD:202362"
misc_feature 250844..251284
/locus_tag="CDBI1_00995"
/note="Aspartate/ornithine carbamoyltransferase, Asp/Orn
binding domain; Region: OTCace; pfam00185"
/db_xref="CDD:201065"
gene 251344..252036
/locus_tag="CDBI1_01000"
/db_xref="GeneID:12215947"
CDS 251344..252036
/locus_tag="CDBI1_01000"
/EC_number="1.3.5.2"
/note="COG0543 2-polyprenylphenol hydroxylase and related
flavodoxin oxidoreductases"
/codon_start=1
/transl_table=11
/product="dihydroorotate dehydrogenase electron transfer
subunit"
/protein_id="YP_006197368.1"
/db_xref="GI:384359516"
/db_xref="GeneID:12215947"
/translation="MYKILENIYIGEDMYRMKVKGNFEGKMGQFYMLRAWDTYPVLSR
PISIHDIDEEGITFLYKVVGEGTQILSNLKVNDNIKLEGPYGNGYAKVDGKVALVGGG
IGVAPLYLVAKNIKNCDAYLGFREDVILEDEYKQVCNKVYTTVGNTFVTDIIDVEKYD
YILTCGPTPMMEKLVKMVEGTKTRIMVSLENHMACGVGACLVCTCKTNGGNKKTCKDG
PVFWGEDVIFNG"
misc_feature 251344..252027
/locus_tag="CDBI1_01000"
/note="dihydroorotate dehydrogenase electron transfer
subunit; Reviewed; Region: PRK00054"
/db_xref="CDD:178828"
misc_feature 251353..252009
/locus_tag="CDBI1_01000"
/note="FAD/NAD binding domain in the electron transfer
subunit of dihydroorotate dehydrogenase. Dihydroorotate
dehydrogenases (DHODs) catalyze the only redox reaction in
pyrimidine de novo biosynthesis. They catalyze the
oxidation of (S)-dihydroorotate to...; Region:
DHOD_e_trans; cd06218"
/db_xref="CDD:99814"
misc_feature order(251467..251469,251473..251484,251518..251526,
251542..251550,251650..251652,251914..251919)
/locus_tag="CDBI1_01000"
/note="FAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99814"
misc_feature order(251473..251475,251479..251484)
/locus_tag="CDBI1_01000"
/note="FAD binding motif [chemical binding]; other site"
/db_xref="CDD:99814"
misc_feature order(251539..251541,251548..251550,251557..251559,
251569..251571,251593..251595,251599..251601)
/locus_tag="CDBI1_01000"
/note="phosphate binding motif [ion binding]; other site"
/db_xref="CDD:99814"
misc_feature order(251635..251637,251647..251658,251662..251664)
/locus_tag="CDBI1_01000"
/note="beta-alpha-beta structure motif; other site"
/db_xref="CDD:99814"
misc_feature order(251650..251655,251710..251718,251839..251844)
/locus_tag="CDBI1_01000"
/note="NAD binding pocket [chemical binding]; other site"
/db_xref="CDD:99814"
misc_feature order(251926..251928,251941..251943,251950..251952,
251986..251988)
/locus_tag="CDBI1_01000"
/note="Iron coordination center [ion binding]; other site"
/db_xref="CDD:99814"
gene 252029..252931
/locus_tag="CDBI1_01005"
/db_xref="GeneID:12215948"
CDS 252029..252931
/locus_tag="CDBI1_01005"
/EC_number="1.3.98.1"
/note="COG0167 Dihydroorotate dehydrogenase"
/codon_start=1
/transl_table=11
/product="dihydroorotate dehydrogenase 1B"
/protein_id="YP_006197369.1"
/db_xref="GI:384359517"
/db_xref="GeneID:12215948"
/translation="MGNLSVKFGSVEFKNPVIMASGTFGFGKEYNEIYDIQKLGGISS
KGLTLNKKPGNNGMRVHETPSGMMNSVGLENPGVQGFIDYELPFFSKLDLVRIANVGG
GTLEDYLLGVQMLNDKPIDIIELNISCPNVKAGGMAFGIKNEVAREVVREVRNITKLP
LVIKLSPNAEDIVGMAKVCEEEGADGVSLVNTFKAMAIDIKNRRPVFENVYAGLSGPA
IKPIALRMVHEVCKNVNIPVMGMGGITKATDAIEFIMAGATCIQVGTANFMNPRIGIE
IIDGINEFMDREGIKSLDEIRGII"
misc_feature 252038..252925
/locus_tag="CDBI1_01005"
/note="dihydroorotate dehydrogenase (subfamily 1) family
protein; Region: pyrD_sub1_fam; TIGR01037"
/db_xref="CDD:130109"
misc_feature 252041..252928
/locus_tag="CDBI1_01005"
/note="Dihydroorotate dehydrogenase (DHOD) class 1B
FMN-binding domain. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step and
the only redox reaction in the de novo biosynthesis of
UMP, the precursor of all pyrimidine...; Region:
DHOD_1B_like; cd04740"
/db_xref="CDD:73402"
misc_feature order(252113..252118,252125..252127,252161..252163,
252185..252187,252203..252208,252212..252214,
252248..252250,252677..252679,252833..252835,
252839..252844)
/locus_tag="CDBI1_01005"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73402"
misc_feature order(252164..252166,252233..252235,252404..252406,
252413..252415,252518..252520,252596..252604,
252674..252676,252755..252757,252818..252823)
/locus_tag="CDBI1_01005"
/note="active site"
/db_xref="CDD:73402"
misc_feature order(252164..252166,252233..252235,252404..252406,
252518..252520,252596..252601,252674..252676,
252755..252757,252818..252823)
/locus_tag="CDBI1_01005"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73402"
misc_feature order(252215..252223,252449..252451,252533..252535,
252608..252628,252635..252643,252677..252679,
252686..252694,252698..252703,252782..252784,
252791..252796,252914..252916,252923..252925)
/locus_tag="CDBI1_01005"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:73402"
misc_feature order(252233..252235,252404..252406,252410..252412,
252599..252604)
/locus_tag="CDBI1_01005"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:73402"
gene 253016..253600
/gene="pyrE"
/locus_tag="CDBI1_01010"
/db_xref="GeneID:12215949"
CDS 253016..253600
/gene="pyrE"
/locus_tag="CDBI1_01010"
/EC_number="2.4.2.10"
/note="COG0461 Orotate phosphoribosyltransferase"
/codon_start=1
/transl_table=11
/product="orotate phosphoribosyltransferase"
/protein_id="YP_006197370.1"
/db_xref="GI:384359518"
/db_xref="GeneID:12215949"
/translation="MSKVDVVDILKKSDALLEGHFLLSSGKHSNRYVQCAKVLRFPEY
AAEVLSTVVEQIKDLDIDLVVGPAMGGVIVSYELGRQLGKEAVFTERKDNTMELRRGF
EVKKGAKIIIAEDVVTTGKSTMETKRVLEALGGEVVGVACIADRTNHDIGMPIYSAIK
LDIQVYESDECPLCKEGKLPVVKPGSREFKELGM"
misc_feature 253169..>253399
/gene="pyrE"
/locus_tag="CDBI1_01010"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(253217..253219,253223..253225,253355..253363,
253367..253381)
/gene="pyrE"
/locus_tag="CDBI1_01010"
/note="active site"
/db_xref="CDD:206754"
gene 253815..254741
/locus_tag="CDBI1_01015"
/db_xref="GeneID:12215950"
CDS 253815..254741
/locus_tag="CDBI1_01015"
/note="COG1893 Ketopantoate reductase"
/codon_start=1
/transl_table=11
/product="putative ketopantoate reductase"
/protein_id="YP_006197371.1"
/db_xref="GI:384359519"
/db_xref="GeneID:12215950"
/translation="MKNQLNENHKKVVFFGVGAVGATFAEQFFNSKYDFKILCDNERK
KRYLEEGFIINGKRYDFNYVTKDEYKQEADFIIIGLKYNNLKENIKELDGLVGKNTVI
MSLLNGVDSEEIIGERFGIGKMVYSYVTNIDAKKINNNIIHTTNGIIVFGNKDNSEDR
KTNIITEVFDDVNIEYILSKDIQRDMWWKYMVNIGVNQTSAILGAPYGVFQSSEHLRE
LAKSAMREVVAIAQAKDISLTEDDVENSLHRILEHSKEGRTSMLQDVEAHRPTEVDMF
SKNICKLGKKYSIPTPINQTLFYMIKVIESRF"
misc_feature 253911..254735
/locus_tag="CDBI1_01015"
/note="2-dehydropantoate 2-reductase; Region: apbA_panE;
TIGR00745"
/db_xref="CDD:162018"
misc_feature 253935..254204
/locus_tag="CDBI1_01015"
/note="Ketopantoate reductase PanE/ApbA; Region: ApbA;
pfam02558"
/db_xref="CDD:202282"
misc_feature 254355..254729
/locus_tag="CDBI1_01015"
/note="Ketopantoate reductase PanE/ApbA C terminal;
Region: ApbA_C; pfam08546"
/db_xref="CDD:203977"
gene complement(254793..255683)
/locus_tag="CDBI1_01020"
/db_xref="GeneID:12215951"
CDS complement(254793..255683)
/locus_tag="CDBI1_01020"
/note="COG0583 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="YP_006197372.1"
/db_xref="GI:384359520"
/db_xref="GeneID:12215951"
/translation="MFEELKTFVAVVEYKNFTKAGEYLNLSQPSVSKHIKNLENYFKV
VLINRSIKQKTIFITESGQILYKRAKEILNLLNITYHDVSQVSDAITGHLKIGASLTI
GEYILPNFLALFSQKYPDIYVEVFIKNTSIVSSHVKDYILDIGLIEGTCSSPSFIQEY
FFEDKMVLALPYNSHLLKDFSFDKLQDQKWIVREDGSGTRDYLDMFLSVKEIIPKSMM
VFGSNYAVKESVRNNLGITIVSNLVTSLPVLNNELSVIELGSSYNRHFSYIFPKDITL
SKAATIFIEELKIFSNLNSI"
misc_feature complement(254820..255683)
/locus_tag="CDBI1_01020"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(255495..255680)
/locus_tag="CDBI1_01020"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(254823..255407)
/locus_tag="CDBI1_01020"
/note="C-terminal substrate binding domain of LysR-type
transcriptional regulator CysL, which activates the
transcription of the cysJI operon encoding sulfite
reductase, contains the type 2 periplasmic binding fold;
Region: PBP2_CysL_like; cd08420"
/db_xref="CDD:176112"
misc_feature complement(order(254988..254993,254997..255002,
255018..255035,255303..255323,255327..255329,
255339..255341,255348..255353,255357..255362))
/locus_tag="CDBI1_01020"
/note="putative dimerization interface [polypeptide
binding]; other site"
/db_xref="CDD:176112"
gene 255893..256903
/locus_tag="CDBI1_01025"
/db_xref="GeneID:12215952"
CDS 255893..256903
/locus_tag="CDBI1_01025"
/note="COG2855 Predicted membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197373.1"
/db_xref="GI:384359521"
/db_xref="GeneID:12215952"
/translation="MTLKTIREILPGLFISVLVGYISIFISILIPKVGAASISIFLGM
FVGNLFLNQKVFQKGYKFSETDLLSYSIVLLGATLSVSTLIDLKVSGILFIILQMTIT
IIAALYIGKKLGFEENFRFLMASGNAVCGSSAIGAIVPVVNATDKEKGIAVTIVNVTG
IFLMFLLPIISQFLYSHELVKTSAMIGGTLQSIGQVVASGAIVGENVKDLATIFKIVR
VIFLVVVVLVFGHMKNQSNREILEEEKDEIKKKKVTIPWYVIGFFITCALFSMNIIPK
EVSVLCKEISNKLEIIALAAIGLKVNVKDLVKQGKEVSLYGLFVGTVQVVSAVVLIKI
FI"
misc_feature 255893..256897
/locus_tag="CDBI1_01025"
/note="Predicted membrane protein [Function unknown];
Region: COG2855"
/db_xref="CDD:32683"
gene 257197..258072
/locus_tag="CDBI1_01030"
/db_xref="GeneID:12215953"
CDS 257197..258072
/locus_tag="CDBI1_01030"
/note="COG0122 3-methyladenine DNA
glycosylase/8-oxoguanine DNA glycosylase"
/codon_start=1
/transl_table=11
/product="DNA glycosylase"
/protein_id="YP_006197374.1"
/db_xref="GI:384359522"
/db_xref="GeneID:12215953"
/translation="MNVYEKGNGVILEGVTDFDPVHIFECGQCFRWHKQEDGSYTGVA
RGRILNVKKENDKIYLNNTNLKEFNSIWYNYFDLGTDYTEIKNKLKNMDEYLNKATEF
GWGIRILRQDGWEMLISFIISSNNRIPMIQRAIENLSRKFGKYIGEYEGNEYYAFPTP
EELNKASQEEIRACQTGFRDKYIKSTTQAVIENNDEVSEYTNLSTEDCRKELLKFNGV
GPKVCDCIALFGMQKYDSFPVDVWVKRVMQEFYIDEDMSLPKMRTYGIDKFKEMSGFA
QQYLFYYARELGIGK"
misc_feature 257224..257547
/locus_tag="CDBI1_01030"
/note="8-oxoguanine DNA glycosylase, N-terminal domain;
Region: OGG_N; pfam07934"
/db_xref="CDD:203810"
misc_feature 257239..258051
/locus_tag="CDBI1_01030"
/note="8-oxoguanine DNA-glycosylase (ogg); Region: ogg;
TIGR00588"
/db_xref="CDD:211589"
misc_feature 257536..258048
/locus_tag="CDBI1_01030"
/note="endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
glycosidases (Alka-family) and other DNA glycosidases;
Region: ENDO3c; cd00056"
/db_xref="CDD:28938"
misc_feature order(257569..257577,257584..257586,257731..257733)
/locus_tag="CDBI1_01030"
/note="minor groove reading motif; other site"
/db_xref="CDD:28938"
misc_feature 257839..257862
/locus_tag="CDBI1_01030"
/note="helix-hairpin-helix signature motif; other site"
/db_xref="CDD:28938"
misc_feature order(257869..257871,258025..258027,258037..258039)
/locus_tag="CDBI1_01030"
/note="substrate binding pocket [chemical binding]; other
site"
/db_xref="CDD:28938"
misc_feature 257914..257916
/locus_tag="CDBI1_01030"
/note="active site"
/db_xref="CDD:28938"
gene 258090..259580
/locus_tag="CDBI1_01035"
/db_xref="GeneID:12215954"
CDS 258090..259580
/locus_tag="CDBI1_01035"
/note="COG1502
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi
n synthases and related enzymes"
/codon_start=1
/transl_table=11
/product="cardiolipin synthetase"
/protein_id="YP_006197375.1"
/db_xref="GI:384359523"
/db_xref="GeneID:12215954"
/translation="MGVIGTIFLFYLIISYLAGAIISVIILLENRDPAKTMSWLLMFI
IFPGVGLMIYAISGRNIRKRKLFKTQKLANNIKEKKLFDTLEKITEIVELEKESIKQN
KLLRDEEDGSYRKRVINMLLKTGMFPFTKNNKVDVFVDGNEKFKRLIEDIREAKDHIH
LEYFIIKDSEIGRVLKEELIKKAKEGIKIRILYDDVGCWRFWFNRKFFREMREVGIEI
AAFLPTKFPIIGGKLNYRNHRKIVVIDGIIGYTGGINIGDEYLGKNDKFGYWRDTHIR
IKGISVYMLQMTFLIDWYYTTKEVLVTKNYFPSVGNVGESMIQVVASGPDSDWEDIHY
AYFSAICQARKNVYIETPYFIPDESLLKAIKSAALSGVDVRIIFPKIADHKIVNIASY
SYFEEILRAGGKVYLYNKGFIHSKVVIIDDKIASAGTANMDLRSFMLNFEVNAFIYDE
EVIRVMTDDFFEDLSHCEELNLEVFKNRNIIQKIKESVARLFSPIL"
misc_feature 258099..259577
/locus_tag="CDBI1_01035"
/note="cardiolipin synthetase; Reviewed; Region: cls;
PRK01642"
/db_xref="CDD:179315"
misc_feature 258135..258269
/locus_tag="CDBI1_01035"
/note="Phospholipase_D-nuclease N-terminal; Region:
PLDc_N; pfam13396"
/db_xref="CDD:205574"
misc_feature 258504..258971
/locus_tag="CDBI1_01035"
/note="Catalytic domain, repeat 1, of bacterial
cardiolipin synthase and similar proteins; Region:
PLDc_CLS_1; cd09110"
/db_xref="CDD:197209"
misc_feature order(258801..258803,258807..258809,258846..258848,
258852..258854,258903..258905)
/locus_tag="CDBI1_01035"
/note="putative active site [active]"
/db_xref="CDD:197209"
misc_feature 258801..258803
/locus_tag="CDBI1_01035"
/note="catalytic site [active]"
/db_xref="CDD:197209"
misc_feature 259050..259571
/locus_tag="CDBI1_01035"
/note="catalytic domain repeat 2 of bacterial cardiolipin
synthase and similar proteins; Region: PLDc_CLS_2;
cd09112"
/db_xref="CDD:197211"
misc_feature order(259329..259331,259335..259337,259374..259376,
259380..259382,259413..259415)
/locus_tag="CDBI1_01035"
/note="putative active site [active]"
/db_xref="CDD:197211"
misc_feature 259329..259331
/locus_tag="CDBI1_01035"
/note="catalytic site [active]"
/db_xref="CDD:197211"
gene 259773..260057
/locus_tag="CDBI1_01040"
/db_xref="GeneID:12215955"
CDS 259773..260057
/locus_tag="CDBI1_01040"
/note="COG0234 Co-chaperonin GroES (HSP10)"
/codon_start=1
/transl_table=11
/product="10 kDa chaperonin"
/protein_id="YP_006197376.1"
/db_xref="GI:384359524"
/db_xref="GeneID:12215955"
/translation="MKIRPLADRVVIKKVEAEEKTASGIVLPGAAKEQPQIAEVVEVG
PGGIVEGKEIKMELTVGDKVIFQKYSGTEVKIEGQEYTILRQSDVLAVIE"
misc_feature 259776..260051
/locus_tag="CDBI1_01040"
/note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
to assist the folding and assembly of proteins and is
found in eubacterial cytosol, as well as in the matrix of
mitochondria and chloroplasts. It...; Region: cpn10;
cd00320"
/db_xref="CDD:73192"
misc_feature order(259776..259778,259782..259784,259788..259790,
259797..259799,259878..259883,259941..259943,
259971..259973,259986..259988,259992..259994,
260040..260048)
/locus_tag="CDBI1_01040"
/note="oligomerisation interface [polypeptide binding];
other site"
/db_xref="CDD:73192"
misc_feature 259824..259865
/locus_tag="CDBI1_01040"
/note="mobile loop; other site"
/db_xref="CDD:73192"
misc_feature order(259902..259904,259935..259937)
/locus_tag="CDBI1_01040"
/note="roof hairpin; other site"
/db_xref="CDD:73192"
gene 260090..261718
/locus_tag="CDBI1_01045"
/db_xref="GeneID:12215956"
CDS 260090..261718
/locus_tag="CDBI1_01045"
/note="COG0459 Chaperonin GroEL (HSP60 family)"
/codon_start=1
/transl_table=11
/product="chaperonin GroEL"
/protein_id="YP_006197377.1"
/db_xref="GI:384359525"
/db_xref="GeneID:12215956"
/translation="MAKEIKFSEETRRALEAGVNKLADTVKVTLGPKGRNVILDKKFG
SPLITNDGVTIAKEIELEDRFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREG
LKNVTAGANPILLRKGIQKAVIVAVEELKNQSRIVETQEAISQVASISAGDEEVGKLI
AEAMEIVGKDGVITVEESQTMNTELDAVEGMQFDRGFVSAYMVTDVDKMEAVLNDPYI
LITDKKISNIQELLPVLEQIVQQGKKLLIIAEDVEGEALSTLVVNKLRGTFDVVAVKA
PGFGDRRKEMLQDIAILTGAQVISEELGYDLKEADLSMLGRASSVKVTKESTTIVDGS
GDKKAIEDRVTQIKHQVEQTTSDFDREKLMERLAKLAGGVAVVKVGAATEVELKERKL
RIEDALNATRAAVEEGIVAGGGTAFVSVIPAIGTLIESLEGEVKLGAQIVKKALEEPL
RQIAINAGLEGAVIVQNVVNSEAETGFDALNEKYVNMIEAGIVDPTKVSRSALQNAAS
IASTFLTTEAAVADLPEKEDAGMPGMGGGMPGMM"
misc_feature 260090..261676
/locus_tag="CDBI1_01045"
/note="chaperonin GroEL; Reviewed; Region: groEL;
PRK12849"
/db_xref="CDD:183791"
misc_feature 260096..261655
/locus_tag="CDBI1_01045"
/note="GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of type
I is seven-fold and they are found...; Region: GroEL;
cd03344"
/db_xref="CDD:48161"
misc_feature order(260096..260098,260108..260110,260159..260161,
260192..260203,260207..260209,260222..260227,
260231..260233,260261..260263,260267..260269,
260291..260293,260303..260305,260312..260314,
260672..260674,260768..260770,260852..260854,
261233..261235,261239..261241,261461..261463,
261623..261625,261632..261652)
/locus_tag="CDBI1_01045"
/note="ring oligomerisation interface [polypeptide
binding]; other site"
/db_xref="CDD:48161"
misc_feature order(260177..260185,260345..260347,260357..260359,
260534..260536,261275..261277,261326..261328,
261446..261448,261563..261565,261569..261571)
/locus_tag="CDBI1_01045"
/note="ATP/Mg binding site [chemical binding]; other site"
/db_xref="CDD:48161"
misc_feature order(260411..260413,261386..261388,261440..261442,
261467..261469,261473..261478,261485..261487)
/locus_tag="CDBI1_01045"
/note="stacking interactions; other site"
/db_xref="CDD:48161"
misc_feature order(260507..260509,260639..260641,260660..260662,
261206..261208,261308..261313)
/locus_tag="CDBI1_01045"
/note="hinge regions; other site"
/db_xref="CDD:48161"
gene 261980..262720
/locus_tag="CDBI1_01050"
/db_xref="GeneID:12215957"
CDS 261980..262720
/locus_tag="CDBI1_01050"
/note="COG1691 NCAIR mutase (PurE)-related proteins"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197378.1"
/db_xref="GI:384359526"
/db_xref="GeneID:12215957"
/translation="MDLRKLLEEVKNENIDIDFALEKLKDLPYEDLGYANIDHHRELR
NGYPEVIYCEGKSDEHILGIIDKMNQKSSNILGTRCRKETFLKIKEIYNHAEYEEASK
ILKIQNHDIENIGKGKIVIATGGTSDIPVADEAYHTAKFLGNDVDRIYDVGVAGIHRL
LNKRHKIDSARVIVAVAGMEGALASVIGGLVDVPVIAVPTSVGYGANFGGLAALLAML
NSCASGISVVNIDNGFGAGYLASMINKL"
misc_feature 261980..262717
/locus_tag="CDBI1_01050"
/note="NCAIR mutase (PurE)-related proteins [General
function prediction only]; Region: COG1691"
/db_xref="CDD:31877"
misc_feature 262328..262708
/locus_tag="CDBI1_01050"
/note="AIR carboxylase; Region: AIRC; smart01001"
/db_xref="CDD:198069"
gene 262804..263538
/locus_tag="CDBI1_01055"
/db_xref="GeneID:12215958"
CDS 262804..263538
/locus_tag="CDBI1_01055"
/note="COG1641 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197379.1"
/db_xref="GI:384359527"
/db_xref="GeneID:12215958"
/translation="MSEKILYFDIISGISGDMTLASLLNLGVPKEIFLEEIHKLRMSD
EFNINISSKTENGIVGTKVEVITKEKHTHRNLVDIFEVIDKSTLNENVKSKAKKIFMV
IGEAEAKVHGTTIDKIHFHEVGAIDSIVDIVGASILVDLLCVDKVCASTVSVGSGFVK
CEHGIIPIPAPATIEILKGVPIKLNNVNGECTTPTGAAIIKVLCDEFVDELEFSPKQI
GYGIGHKKFEVPNILRTVLGEKKKKN"
misc_feature 262813..>263520
/locus_tag="CDBI1_01055"
/note="Protein of unknown function DUF111; Region: DUF111;
cl03398"
/db_xref="CDD:199395"
gene 263592..263987
/locus_tag="CDBI1_01060"
/db_xref="GeneID:12215959"
CDS 263592..263987
/locus_tag="CDBI1_01060"
/note="COG1641 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197380.1"
/db_xref="GI:384359528"
/db_xref="GeneID:12215959"
/translation="MYEKILDEKALDIYTESIYMKKNRPATKVSILCNESDLEKFIKI
LLLETSTFGVRYNAYNREILERKFVKLDTKYGVVTVKLGYYKGKLVKVTPEYNECKTI
AKNEDIPIKKVFADINFRIKEEFSENLLT"
misc_feature <263598..263930
/locus_tag="CDBI1_01060"
/note="Protein of unknown function DUF111; Region: DUF111;
cl03398"
/db_xref="CDD:199395"
gene 264369..265904
/gene="guaA"
/locus_tag="CDBI1_01065"
/db_xref="GeneID:12215960"
CDS 264369..265904
/gene="guaA"
/locus_tag="CDBI1_01065"
/EC_number="6.3.5.2"
/note="COG0518 GMP synthase - Glutamine amidotransferase
domain"
/codon_start=1
/transl_table=11
/product="GMP synthase"
/protein_id="YP_006197381.1"
/db_xref="GI:384359529"
/db_xref="GeneID:12215960"
/translation="MKHELVLVIDFGGQYNQLIARRVRENNVYCEILPCTASIERIKE
KNPKGIIFTGGPNSAYLEDSPTISKEIFELGVPILGICYGIQIMSHVLGGVVRKGNKQ
EKEYGKTSITYGKSSLFEGITTNSVWMSHTDLIEKVPEGFTIVANTNDCPVAAMENVE
RNLYGVQFHPEVEHCLEGDKILTNFLYNICKVKGDWTTDSFIEDKIKELKEKIGDKKA
LCALSGGVDSSVAAVLIHKAIGDNLTCIFVDHGLLRKNEGNDVERIFREKFDINLIRV
NAEDRFLSKLKGVSEPEAKRKIIGEEFIRVFEEESNKLGKMDFLVQGTIYPDVIESGH
GNAATIKSHHNVGGIPEDVDFQEIVEPLRELFKDEVRKIGLELGIEEGLIFRHPFPGP
GLGIRVIGDVTKEKCDILREADAVYMDELRKAGLYREIWQAFATLPDVKTVGVMGDER
TYAYLVGLRAVTSSDGMTSDWYKMPYDVLERISNRIINEVDGVNRVVYDITSKPPGTI
EWE"
misc_feature 264369..265901
/gene="guaA"
/locus_tag="CDBI1_01065"
/note="GMP synthase; Reviewed; Region: guaA; PRK00074"
/db_xref="CDD:178842"
misc_feature 264384..264926
/gene="guaA"
/locus_tag="CDBI1_01065"
/note="Type 1 glutamine amidotransferase (GATase1) domain
found in GMP synthetase; Region: GATase1_GMP_Synthase;
cd01742"
/db_xref="CDD:153213"
misc_feature order(264405..264410,264528..264536,264612..264617,
264756..264758,264873..264875)
/gene="guaA"
/locus_tag="CDBI1_01065"
/note="AMP/PPi binding site [chemical binding]; other
site"
/db_xref="CDD:153213"
misc_feature order(264531..264533,264615..264617)
/gene="guaA"
/locus_tag="CDBI1_01065"
/note="candidate oxyanion hole; other site"
/db_xref="CDD:153213"
misc_feature order(264612..264614,264873..264875,264879..264881)
/gene="guaA"
/locus_tag="CDBI1_01065"
/note="catalytic triad [active]"
/db_xref="CDD:153213"
misc_feature order(264624..264626,264759..264761,264867..264869)
/gene="guaA"
/locus_tag="CDBI1_01065"
/note="potential glutamine specificity residues [chemical
binding]; other site"
/db_xref="CDD:153213"
misc_feature 265020..265898
/gene="guaA"
/locus_tag="CDBI1_01065"
/note="The C-terminal domain of GMP synthetase. It
contains two subdomains; the ATP pyrophosphatase domain
which closes to the N-termial and the dimerization domain
at C-terminal end. The ATP-PPase is a twisted,
five-stranded parallel beta-sheet sandwiched...; Region:
GMP_synthase_C; cd01997"
/db_xref="CDD:30184"
misc_feature order(265020..265091,265095..265127,265131..265163,
265194..265307,265323..265367,265389..265418,
265431..265433,265437..265508,265524..265568)
/gene="guaA"
/locus_tag="CDBI1_01065"
/note="ATP Binding subdomain [chemical binding]; other
site"
/db_xref="CDD:30184"
misc_feature order(265029..265037,265041..265052,265104..265106,
265110..265112,265467..265469)
/gene="guaA"
/locus_tag="CDBI1_01065"
/note="Ligand Binding sites [chemical binding]; other
site"
/db_xref="CDD:30184"
misc_feature order(265593..265631,265656..265685,265692..265724,
265734..265781,265800..265826,265830..265898)
/gene="guaA"
/locus_tag="CDBI1_01065"
/note="Dimerization subdomain; other site"
/db_xref="CDD:30184"
gene 266443..267873
/locus_tag="CDBI1_01070"
/db_xref="GeneID:12215961"
CDS 266443..267873
/locus_tag="CDBI1_01070"
/note="'COG0737 5'-nucleotidase/2',3'-cyclic
phosphodiesterase and related esterases'"
/codon_start=1
/transl_table=11
/product="membrane-associated nucleotidase"
/protein_id="YP_006197382.1"
/db_xref="GI:384359530"
/db_xref="GeneID:12215961"
/translation="MILNQIFIEDGGIMRNKIIIGITFSLVLLMSGCASKQTAEINVL
ATTDLHGVIPYELTSYVKEERKKDKNLTLVDAGDFFDSGEVFGSSMDSYFSARYKDGD
NNTESYIETPISKDMKEVGYDVAVLGNHEFISNNKFYLDNMISDFEKQKINILSANTY
KKNGDSYTKPYIIKNINTPEGNVKLGILGLTIKEVGERKQWKDGKLVDSKSLELKDQE
GYNGELYMNDLVEDAKKWVGIMEKEKPDIIVAVAHTGEKPKKPRNPGNRIQDLAQQVD
GIDAIVAGHNHVQIEQHDYKNKSGENVIVTEPGKHGEYISKINFKLEKNNDKWNIVDK
SSKLIKFEKNQESDKFGEFISSINKVSKDKKEIRLSEVKTPEWDKIYVFKSGTSADDI
YKTIGYKWRNISSPKGDDMVQIVVMNNNKPVSYIYGEAEVMPINIKCDESEYKNNVVT
IYPNKNDKFKIEKGKQEYSINLKHIQ"
misc_feature 266563..267459
/locus_tag="CDBI1_01070"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:212351"
misc_feature 266569..267309
/locus_tag="CDBI1_01070"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature order(266584..266586,266590..266592,266674..266676,
266827..266832,267199..267201,267295..267297)
/locus_tag="CDBI1_01070"
/note="active site"
/db_xref="CDD:163614"
misc_feature order(266584..266586,266590..266592,266674..266676,
266827..266829,267199..267201,267295..267297)
/locus_tag="CDBI1_01070"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163614"
gene complement(268021..268896)
/locus_tag="CDBI1_01075"
/db_xref="GeneID:12215962"
CDS complement(268021..268896)
/locus_tag="CDBI1_01075"
/note="COG0583 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197383.1"
/db_xref="GI:384359531"
/db_xref="GeneID:12215962"
/translation="MINIRYLEILEAIEQTGTFTGAAKKLHITQSAVSHAIAELEQQA
ETSLFDRLPRGVCLTRCGISLLDEARSILTACRNLDKKISRLEECTPINIVSSITIAS
FLLPPILSRLKNSFPSLKVNVRVESANSAMDILKSGEADICFWEGIEPQGAFRTILLG
SYKLCVACAPTFPLSEQTLSLRQLCTFPLLLREQGSAIRDTLDSVLSLSNQKAYPVWE
SVNSFALIKAAEAGLGITILPENLLLDSLLHKKLRLIELDEIDMENKMLAILHKDKNI
TQPLEIILDNISNVL"
misc_feature complement(268024..268893)
/locus_tag="CDBI1_01075"
/note="Transcriptional regulator [Transcription]; Region:
LysR; COG0583"
/db_xref="CDD:30928"
misc_feature complement(268711..268887)
/locus_tag="CDBI1_01075"
/note="Bacterial regulatory helix-turn-helix protein, lysR
family; Region: HTH_1; pfam00126"
/db_xref="CDD:201021"
misc_feature complement(268042..268623)
/locus_tag="CDBI1_01075"
/note="LysR substrate binding domain; Region:
LysR_substrate; pfam03466"
/db_xref="CDD:202651"
misc_feature complement(order(268204..268209,268213..268218,
268234..268251,268522..268542,268546..268548,
268558..268560,268567..268572,268576..268581))
/locus_tag="CDBI1_01075"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:176102"
gene 269016..269579
/locus_tag="CDBI1_01080"
/db_xref="GeneID:12215963"
CDS 269016..269579
/locus_tag="CDBI1_01080"
/note="COG2059 Chromate transport protein ChrA"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197384.1"
/db_xref="GI:384359532"
/db_xref="GeneID:12215963"
/translation="MNQSRKIYFWLLIINLFISTFTFGGGYVVVPMIRRYFVNQKQFF
TEDDLMSMAAVAQSTPGAIAINLSALAGYRVAGTLGVVISCTAAIIPPLVILGLVSAF
YTTFISNAIVTAVLKGMQAGVAALIVDLIIDMCSMILKQRSLFLSTMIPIAFFANFVM
SINVIFILSVCCFVCVMQVFYKKRENK"
misc_feature 269022..269525
/locus_tag="CDBI1_01080"
/note="Chromate transport protein ChrA [Inorganic ion
transport and metabolism]; Region: ChrA; COG2059"
/db_xref="CDD:32242"
misc_feature 269034..269528
/locus_tag="CDBI1_01080"
/note="Chromate transporter; Region: Chromate_transp;
pfam02417"
/db_xref="CDD:190304"
gene 269576..270142
/locus_tag="CDBI1_01085"
/db_xref="GeneID:12215964"
CDS 269576..270142
/locus_tag="CDBI1_01085"
/note="COG2059 Chromate transport protein ChrA"
/codon_start=1
/transl_table=11
/product="chromate transporter"
/protein_id="YP_006197385.1"
/db_xref="GI:384359533"
/db_xref="GeneID:12215964"
/translation="MNTIWNLFFIFLKIGLFSIGGGYAIIPLIQEKVVNQTGWISEKM
FTDIITISQMTPGPLAVNTSTFVGLQIGGFWGAVAATLGCVLCGVVISLFLYNFFQKH
QNSTYIFEILNGLKSASLGLIISAAATIIILALFGTNKVYFNSIFEMLNWTALIIFFV
ILLIVRKWKINPIVIIIISGILGIFFYL"
misc_feature 269579..>269917
/locus_tag="CDBI1_01085"
/note="Chromate transport protein ChrA [Inorganic ion
transport and metabolism]; Region: ChrA; COG2059"
/db_xref="CDD:32242"
misc_feature 269582..>269917
/locus_tag="CDBI1_01085"
/note="Chromate transporter; Region: Chromate_transp;
pfam02417"
/db_xref="CDD:190304"
gene complement(270271..270507)
/locus_tag="CDBI1_01090"
/db_xref="GeneID:12215965"
CDS complement(270271..270507)
/locus_tag="CDBI1_01090"
/note="COG2267 Lysophospholipase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197386.1"
/db_xref="GI:384359534"
/db_xref="GeneID:12215965"
/translation="MLECFIAEDSKIKDGVNIPTLVFKTLHDRYFKTQYFDSYYNSLK
CKKKLVEINNVHNSYYIDSEKFCQEAYDWFVENQ"
gene complement(270817..274245)
/locus_tag="CDBI1_01095"
/db_xref="GeneID:12215966"
CDS complement(270817..274245)
/locus_tag="CDBI1_01095"
/note="COG0178 Excinuclease ATPase subunit"
/codon_start=1
/transl_table=11
/product="DNA repair protein"
/protein_id="YP_006197387.1"
/db_xref="GI:384359535"
/db_xref="GeneID:12215966"
/translation="MKINNYKNQSIITNPKKFENKYQDLPKTPIELLKVVQSLVIHGD
QGKLYGISFNKQQSDEELLRTIPQMLKRIFEINSNPLTIPRNPKQRLVGMCRDYSLLL
VSLLRYRGFEARMRAGFANYFENELTYEDHWLVEYYDTLTKRWIRIDAQIDDIQKNYF
QINFDTHDVGKTDGFLTGSEAWIRCRQGHAHPDDFGYNKNWKGWHSVKGNLLHDFNNM
IGLELLPWDLWTELSSKKYNQLTRAEKNLLDEMAEILSSGNIKIEDLNLLIEKLPEDY
LKSIFSQLKILGISEIKELGNPLELEKKFKFAKAINKSIKNSLCHNKSSIYLKGGRQN
NLKDVEVTIPKNQITVITGVSGSGKSSLAFDTIYEEGKRRYFENLGNGAKLSEQLQKP
EFDLLQGLTPTIAIEQKKGSQNPRSTVGTLTSIWDYLRMLFVSIGKSYCPYCKTPLEK
KNNTKNYCPHCQTIFSKINTSTFNANSHTGACHDCNGLGFTYQVNPQLIVKDPTISIL
DGATYYFGKLRGKKPNGNWMVGELYAIAKDKNIDLDIPWNELPRDFIDAILYGTDDKI
YEFSFESKGRESKIRRPASGAINHIQRLFRESSSENNTLHQYMNKIPCNTCGGELLCI
EARFTTIKGYRFPELTKMTIEQLWNWLCELPNQLQKNELSLVNDILTELKIRVSYLLK
VGLSYISTDRTAPTLSGGELQRVRLSSQLGSELVGLTYILDEPSIGLHPRDHNLIIKM
IEELRDKGNTVIVVEHDKDTILSADYIIDVGPNAGTKGGFIIAEGTTQEIIKNPNSIT
GKYLSTYNKISSQNKIIPSKWLSLKGCHANNLKNIDVEIPLNCMCSITGVSGSGKSSL
VFHSLLPALEEKLKQKSIPNKNYTALTGFDAIDDFILMDQTPIGKSSRSTPATYINIF
DEIRSLFTETPQAKQKLLDESYFSFNSKKGQCPNCQGLGKTKIILQYMADQWVTCNEC
QGKRYQKEILSIQYKGKTIADILDMEVAEAKTFFSDCSDIYRKLSLLDEVGLGYLKLG
QNTLGLSGGESQRIKLAKELGTKTKKRMLYILDEPTTGLHFKDIENLLITFRKLVNEQ
HSLLIIEHNTEVIRASDWIIDIGPDSGINGGEIVASGTPDEIKINPNSITGHFI"
misc_feature complement(<272935..273270)
/locus_tag="CDBI1_01095"
/note="ATP-binding cassette domain I of the excision
repair protein UvrA; Region: ABC_UvrA_I; cd03270"
/db_xref="CDD:213237"
misc_feature complement(271891..>272229)
/locus_tag="CDBI1_01095"
/note="ATP-binding cassette domain I of the excision
repair protein UvrA; Region: ABC_UvrA_I; cd03270"
/db_xref="CDD:213237"
misc_feature complement(270865..271788)
/locus_tag="CDBI1_01095"
/note="ATP-binding cassette domain II of the excision
repair protein UvrA; Region: ABC_UvrA_II; cd03271"
/db_xref="CDD:213238"
misc_feature complement(270940..271713)
/locus_tag="CDBI1_01095"
/note="AAA domain; Region: AAA_21; pfam13304"
/db_xref="CDD:205484"
gene 274564..276798
/locus_tag="CDBI1_01100"
/db_xref="GeneID:12215967"
CDS 274564..276798
/locus_tag="CDBI1_01100"
/note="'COG5001 Predicted signal transduction protein
containing a membrane domain, an EAL and a GGDEF domain'"
/codon_start=1
/transl_table=11
/product="signaling protein"
/protein_id="YP_006197388.1"
/db_xref="GI:384359536"
/db_xref="GeneID:12215967"
/translation="MKLSRYKKNSLVLSIILCSLIISILVITVFNTVKLHNISNKQSK
NYLNDVSTQIVMNVDSKIKFILSDLRIMADFIKQYEGDSRYEYLSKRKTSYKYYDVGI
IDLEGKAEFLSGKKFDLKNTASYKKGIEGKEYSEVIESMGFVLYSVPIFNDNHEVSSI
LIGVSNKESMDEILNIDSFNGEGTIEIINSQGKTLFIGKNNELIKDLSYKYKDSADEP
WAQKMLNDFKNDKSGNITITSSKGVQCLLTYHPITRGLNDWHFLLIVPEDVVLGELNK
LNSFTIIMTFITTCIIGIITLILYIIRRKYVNQIENIAYLDSITNGINSTKFSMLVKP
LISESPDSTYMMIAMNIKDFKLINDCFGSEKGNMTLKHLYNILYKNIDENEEFVCRHD
ADLFYLLIKNRPVLEALELLYKIEADTNYFNKNRENPYFLRLSVGIYTIENHNEDLIT
IQDHANTARKSFNKTHQSDFSFYSDIERKRLISEKEISNLMEKALENKEFFMCLQPKI
DIKSGKISGAESLVRWKNSEKGIIYPSNFIPLFEKSGFICKLDLYILEETCKLISKWI
KEGKEVLRISVNVSRQHLNDKLFLEKYKHICNKYNVPTCLIDLELTESIFLENPEAID
IIEDIHSNGFKCSIDDFGFGYSSLGILKDFKVDIIKLDRSFFVSKNNIDRGKVVIKSI
IELSKRLGMKVTAEGIEELEQVEFLKNVGCDYIQGYVFSKPLLISDFENFAYENNKIK
NIHY"
misc_feature 275470..275982
/locus_tag="CDBI1_01100"
/note="c-di-GMP synthetase (diguanylate cyclase, GGDEF
domain) [Signal transduction mechanisms]; Region:
COG2199"
/db_xref="CDD:32381"
misc_feature 275506..275937
/locus_tag="CDBI1_01100"
/note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
GGDEF; cd01949"
/db_xref="CDD:143635"
misc_feature order(275611..275613,275743..275745)
/locus_tag="CDBI1_01100"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143635"
misc_feature order(275626..275628,275635..275640,275650..275652,
275662..275664,275731..275733,275737..275748)
/locus_tag="CDBI1_01100"
/note="active site"
/db_xref="CDD:143635"
misc_feature order(275716..275718,275803..275805)
/locus_tag="CDBI1_01100"
/note="I-site; other site"
/db_xref="CDD:143635"
misc_feature 276028..276747
/locus_tag="CDBI1_01100"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cd01948"
/db_xref="CDD:30163"
gene 277054..279084
/locus_tag="CDBI1_01105"
/db_xref="GeneID:12215968"
CDS 277054..279084
/locus_tag="CDBI1_01105"
/note="COG3711 Transcriptional antiterminator"
/codon_start=1
/transl_table=11
/product="putative transcription antiterminator"
/protein_id="YP_006197389.1"
/db_xref="GI:384359537"
/db_xref="GeneID:12215968"
/translation="MISGRMLLIMNFLKGKNKTSYKDISKQLSIEERKVRYDINNLNI
VLRSLNKSVIQKMNKGVLIIPDDFQVVCINNNEYVFSLTERVSIMKIISMFKIDNLNL
EKLSKEFQVSRSSIKNDLNVLSSELERNQITITYDKSFKISGEEDLIYKQRLNILKSY
SYLFGKEKSDLSVFEKYLVNVIEKIFKGIYLIDIYNWSMNLLLQMGWTLNDESFTWYV
SNIFLFTWYIHSDEKHPLESASLSEPCFENKFDQEFETIIQKKLTKEQIFLLKSFVFF
TNKYASLNEDMDLISTEIIVQDLIYNMSEILEISFKEDMILYKGLLNHIAPLIERIKQ
NIQIYEELLHVIPDKYQYVLEATKVSIQKNRVLSQIKNENEIILLAIHFLGSIHRNER
NNYKNILLVCGFGYGVIAMLKDSLVNDYQINIVESIPSYKLQDYKEWESIDFIITTSK
IVIDLPKTIIEINPFLQEEDYLKFEEKGIKRKNVLTNYMSIKKRLDFLEEDAQKRVLS
IICQELGYSDERILFRQLNLSDLIGIDTIRIIDEDMKWEDAVKISSNILANCDFVSAQ
YAENIIDILKNVGFYAVKDNEFALLHGNDSSLVKVSSISLLICKEAVSFGDKKVKIIF
CLASRDKKEQIPAIINLTKMVYKTNFIAMLESAKTKEEAEVLIHKYEKEVTV"
misc_feature 277066..278460
/locus_tag="CDBI1_01105"
/note="Transcriptional antiterminator [Transcription];
Region: BglG; COG3711"
/db_xref="CDD:33506"
misc_feature 277942..278211
/locus_tag="CDBI1_01105"
/note="PRD domain; Region: PRD; pfam00874"
/db_xref="CDD:201484"
misc_feature 278239..278496
/locus_tag="CDBI1_01105"
/note="PTS_IIB_bgl_like: the PTS (phosphotransferase
system) IIB domain of a family of sensory systems composed
of a membrane-bound sugar-sensor (similar to BglF) and a
transcription antiterminator (similar to BglG) which
regulate expression of genes involved...; Region:
PTS_IIB_bgl_like; cd05568"
/db_xref="CDD:99910"
misc_feature order(278257..278268,278272..278280)
/locus_tag="CDBI1_01105"
/note="P-loop; other site"
/db_xref="CDD:99910"
misc_feature order(278257..278259,278263..278268,278275..278280)
/locus_tag="CDBI1_01105"
/note="active site"
/db_xref="CDD:99910"
misc_feature 278257..278259
/locus_tag="CDBI1_01105"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:99910"
misc_feature 278644..279039
/locus_tag="CDBI1_01105"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cl00163"
/db_xref="CDD:206872"
misc_feature order(278773..278775,278827..278829)
/locus_tag="CDBI1_01105"
/note="active site"
/db_xref="CDD:29266"
misc_feature 278827..278829
/locus_tag="CDBI1_01105"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29266"
gene 279081..279533
/locus_tag="CDBI1_01110"
/db_xref="GeneID:12215969"
CDS 279081..279533
/locus_tag="CDBI1_01110"
/note="COG1762 Phosphotransferase system
mannitol/fructose-specific IIA domain (Ntr-type)"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIA"
/protein_id="YP_006197390.1"
/db_xref="GI:384359538"
/db_xref="GeneID:12215969"
/translation="MNKLVNVKCSFKIHANSKEEAIVSLVDVVSKEGYLIDKNQFLED
VLKREETLSTYIGHGIGLPHSQSVGVKNSCITIGKLDIPIEWTEEGEKVDLIFLISVT
KDNENNLHLKILSKLARLLMHESFRNQIRCSDEQTVYNLIKEKIEEED"
misc_feature 279111..279506
/locus_tag="CDBI1_01110"
/note="PTS_IIA, PTS system, fructose/mannitol specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This...; Region: PTS_IIA_fru;
cd00211"
/db_xref="CDD:29266"
misc_feature order(279222..279224,279270..279272)
/locus_tag="CDBI1_01110"
/note="active site"
/db_xref="CDD:29266"
misc_feature 279270..279272
/locus_tag="CDBI1_01110"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29266"
gene 279535..280590
/locus_tag="CDBI1_01115"
/db_xref="GeneID:12215970"
CDS 279535..280590
/locus_tag="CDBI1_01115"
/note="'COG1299 Phosphotransferase system,
fructose-specific IIC component'"
/codon_start=1
/transl_table=11
/product="putative PTS system fructose-like transporter
subunit EIIC"
/protein_id="YP_006197391.1"
/db_xref="GI:384359539"
/db_xref="GeneID:12215970"
/translation="MRILKFLQKHLMTATSYMIPFVVAGGILFALSVTLSGQAAVPET
GWLAKLNQIGAAGLALFIPILGGYIAFSMADKPGLAPGMIGAYLAKEVNAGFIGGIIA
GFIAGFVVLQLKKIKLAPTMRTLGSIFIYPLIGTLITGGIIVFLIGEPIASFMTWMTN
WLNGMSGVSKIPLGGILGGMIASDMGGPINKVAATFAQTQVDTLPYLMGGVGVAICIP
PIGLGLATLLFPKKFSKEERDSGKASLLMGCVGITEGAIPFATSDPVRVIPCIMAGSI
IGNIMAFLLGCLNHAPWGGLIVLPVVDNRLGYIASVLTGAVVVAVLMKLVKKDVKEDE
EIEEDLDESIELIFEEL"
misc_feature 279535..280482
/locus_tag="CDBI1_01115"
/note="putative PTS system fructose-like transporter
subunit EIIC; Provisional; Region: PRK10478"
/db_xref="CDD:182490"
gene 280657..280965
/locus_tag="CDBI1_01120"
/db_xref="GeneID:12215971"
CDS 280657..280965
/locus_tag="CDBI1_01120"
/EC_number="2.7.1.69"
/note="COG1445 Phosphotransferase system fructose-specific
component IIB"
/codon_start=1
/transl_table=11
/product="putative PTS system fructose-like transporter
subunit EIIB"
/protein_id="YP_006197392.1"
/db_xref="GI:384359540"
/db_xref="GeneID:12215971"
/translation="MKIVAVTSCPSGVAHTYMSAESLELSAKKFGIEIKVETQGSSGI
DNELSLKDIDEATCVILTNDVEIRNMERFKGKKVVRMSVSEIIKKSDALIKKIKDTFQ
"
misc_feature 280663..280947
/locus_tag="CDBI1_01120"
/note="PTS_IIB_fructose: subunit IIB of enzyme II (EII) of
the fructose-specific phosphoenolpyruvate:carbohydrate
phosphotransferase system (PTS). In this system, EII (also
referred to as FruAB) is a fructose-specific permease made
up of two proteins (FruA and...; Region: PTS_IIB_fructose;
cd05569"
/db_xref="CDD:99911"
misc_feature order(280681..280692,280696..280704)
/locus_tag="CDBI1_01120"
/note="P-loop; other site"
/db_xref="CDD:99911"
misc_feature order(280681..280683,280687..280692,280699..280704)
/locus_tag="CDBI1_01120"
/note="active site"
/db_xref="CDD:99911"
misc_feature 280681..280683
/locus_tag="CDBI1_01120"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:99911"
gene 281069..282334
/locus_tag="CDBI1_01125"
/db_xref="GeneID:12215972"
CDS 281069..282334
/locus_tag="CDBI1_01125"
/note="COG4573 Predicted tagatose 6-phosphate kinase"
/codon_start=1
/transl_table=11
/product="sugar-phosphate kinase"
/protein_id="YP_006197393.1"
/db_xref="GI:384359541"
/db_xref="GeneID:12215972"
/translation="MKKLPIKTVVQRLLDLQEEGKSATLLGIGPMSPNLLQASFELAK
DDDFPLMFIASRNQVDADELGGGYVNGWNQETFTKDIKKIADKVGFDGLYYLCRDHGG
PWQRDKERNDHLSVDEAMELGKKSYLADIEAGFDLLMIDPTKDPFEIGKVIPLDVVLE
RTVELIEYCENERKRLNLPDIGYEVGTEETNGGLTSTETYETFITRLKVELDNRGLPM
PTFIVGQTGTLTRKTEQVGTFNFRNAYDLAQMAKKYGVGLKEHNGDYLDDVTLLEHIP
SQIIATNVAPQYGTEETRAYLKLAEVECKLEKEGLVDKTSNIRHVLLVNAIECGRWRK
WVVGEQKNLTTEEIFKNEVLSNEILDIAGHYTFNNDDVKKEIEVLYDNLSKNNIDGQR
FVVDHIKRPLRDYAECYNLKGVTTRILNK"
misc_feature 281081..>281659
/locus_tag="CDBI1_01125"
/note="Tagatose 6 phosphate kinase; Region:
Tagatose_6_P_K; cl09211"
/db_xref="CDD:209001"
gene 282422..283138
/locus_tag="CDBI1_01130"
/db_xref="GeneID:12215973"
CDS 282422..283138
/locus_tag="CDBI1_01130"
/note="COG1011 Predicted hydrolase (HAD superfamily)"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="YP_006197394.1"
/db_xref="GI:384359542"
/db_xref="GeneID:12215973"
/translation="MINLIFDVDDTLYNQLTPFYTAYNKVFSSIKDISIEDLYMSSRK
YSDEVFHMTENGEMPIKEMHIYRIMKAFEELGNSITEKDAQSFQDEYIYQQSQITLIP
EVERILNFSKERNINLGIITNGPSNHQRMKLKQLNIENWVDKSNIFISSEVGFSKPDT
NIFRVAENVMNLDRENTYYVGDSYRNDVLGAKKAGWKSIWLNHRGHEVEELFYKPDFV
ILEHKDLISLFIKICSYKNM"
misc_feature 282428..283105
/locus_tag="CDBI1_01130"
/note="Predicted hydrolase (HAD superfamily) [General
function prediction only]; Region: COG1011"
/db_xref="CDD:31215"
misc_feature 282686..283021
/locus_tag="CDBI1_01130"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 282785..282787
/locus_tag="CDBI1_01130"
/note="motif II; other site"
/db_xref="CDD:119389"
gene complement(283333..283626)
/locus_tag="CDBI1_01135"
/db_xref="GeneID:12215974"
CDS complement(283333..283626)
/locus_tag="CDBI1_01135"
/note="COG5577 Spore coat protein"
/codon_start=1
/transl_table=11
/product="spore coat protein"
/protein_id="YP_006197395.1"
/db_xref="GI:384359543"
/db_xref="GeneID:12215974"
/translation="MRNMIENLIKNNTYIDDKVIMLSMLSSAKASANMYLNSALTSST
PELRAIYSASLTQMVEGHTALTELSINKGWVKPYDKPIQQLTCSYKESQNVID"
misc_feature complement(283390..283581)
/locus_tag="CDBI1_01135"
/note="Coat F domain; Region: Coat_F; pfam07875"
/db_xref="CDD:203788"
gene complement(283632..283847)
/locus_tag="CDBI1_01140"
/db_xref="GeneID:12215975"
CDS complement(283632..283847)
/locus_tag="CDBI1_01140"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197396.1"
/db_xref="GI:384359544"
/db_xref="GeneID:12215975"
/translation="MRTLSETEKISLAAVIKMESDGLLMQRAINMLISDEDLKRQSES
SILATEGRIKAIQQFIVENEILISEEV"
gene complement(284392..284904)
/locus_tag="CDBI1_01145"
/db_xref="GeneID:12215976"
CDS complement(284392..284904)
/locus_tag="CDBI1_01145"
/note="COG0778 Nitroreductase"
/codon_start=1
/transl_table=11
/product="nitroreductase"
/protein_id="YP_006197397.1"
/db_xref="GI:384359545"
/db_xref="GeneID:12215976"
/translation="MLEVIKNRRSIRTYIDKNIEEDKITEILKSAMQAPSSKNAQPWE
FIIVDDKELLKELSKSQHRAKHIEFAPLCIVVLGNRDKFLKPGKWIQDLGACTQNLLL
EVTNQGLAACWAGVFPKNKVVNKVKQILDLPVKLVPYALISIGYSEEKNEFIDRFDEN
KIHRNVYKNR"
misc_feature complement(284404..284901)
/locus_tag="CDBI1_01145"
/note="NAD(P)H:flavin oxidoreductase-like family 1. A
subfamily of the nitroreductase family containing
uncharacterized proteins that are similar to
nitroreductase. Nitroreductase catalyzes the reduction of
nitroaromatic compounds such as nitrotoluenes; Region:
NADPH_oxidoreductase_1; cd02150"
/db_xref="CDD:48395"
misc_feature complement(order(284557..284562,284791..284793,
284869..284871,284875..284877,284881..284883))
/locus_tag="CDBI1_01145"
/note="putative FMN binding site [chemical binding]; other
site"
/db_xref="CDD:48395"
gene 285354..285830
/locus_tag="CDBI1_01150"
/db_xref="GeneID:12215977"
CDS 285354..285830
/locus_tag="CDBI1_01150"
/note="COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR)
mutase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole carboxylase
catalytic subunit"
/protein_id="YP_006197398.1"
/db_xref="GI:384359546"
/db_xref="GeneID:12215977"
/translation="MKVAVVMGSKSDYPKLEEGIKLLEKYGIEVVARALSAHRTPEQL
SIFLKEIEDDTDVIIAAAGKAAHLPGVIASQTLIPVIGLPIKSSTMDGLDSLLSIVQM
PKGIPVATVTIDLGLNAALLALQIMTLKYPKLKEDLKSYREEMAQKVLEDDKNLRG"
misc_feature 285354..285800
/locus_tag="CDBI1_01150"
/note="AIR carboxylase; Region: AIRC; pfam00731"
/db_xref="CDD:144362"
gene 285836..286534
/locus_tag="CDBI1_01155"
/db_xref="GeneID:12215978"
CDS 285836..286534
/locus_tag="CDBI1_01155"
/EC_number="6.3.2.6"
/note="COG0152
Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR)
synthase"
/codon_start=1
/transl_table=11
/product="phosphoribosylaminoimidazole-succinocarboxamide
synthase"
/protein_id="YP_006197399.1"
/db_xref="GI:384359547"
/db_xref="GeneID:12215978"
/translation="MLLYEGKAKQVYSTDNENEYVVYYKDDATAFNGEKKAEISSKGI
LNNKISTIIFEMLKENNINTHFIKSLSDREMLVKKVEILPLEVIVRNIAAGSICKRVG
LEEGVVFDEPIFEISYKNDAYGDPMLNDDYAVAMKLATREELKFLREETLKINELLKA
FFLKLNLKLVDFKIEFGKDSEGNIILADEVSPDTCRLWDVNTNEKLDKDRFRKDLGDL
VEGYTEVLSRMNNK"
misc_feature 285839..286531
/locus_tag="CDBI1_01155"
/note="phosphoribosylaminoimidazole-succinocarboxamide
synthase; Reviewed; Region: PRK09362"
/db_xref="CDD:181800"
misc_feature 285839..286528
/locus_tag="CDBI1_01155"
/note="bacterial and archaeal
5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide
(SAICAR) synthase; Region: SAICAR_synt_PurC; cd01415"
/db_xref="CDD:133470"
misc_feature order(285842..285847,285851..285856,285860..285862,
285866..285871,285893..285895,285899..285901,
286028..286030,286067..286069,286073..286075,
286079..286081,286190..286192,286358..286360,
286394..286399)
/locus_tag="CDBI1_01155"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:133470"
misc_feature order(285845..285847,285851..285862,285866..285868,
285893..285895,285929..285931,286031..286033,
286064..286075,286079..286081,286091..286093,
286097..286099,286103..286105,286115..286123,
286184..286186,286190..286192,286208..286210,
286346..286354,286358..286360,286397..286399,
286412..286423)
/locus_tag="CDBI1_01155"
/note="active site"
/db_xref="CDD:133470"
misc_feature order(285929..285931,286091..286093,286097..286099,
286103..286105,286115..286123,286184..286186,
286208..286210,286346..286354,286412..286423)
/locus_tag="CDBI1_01155"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:133470"
gene 286546..287913
/locus_tag="CDBI1_01160"
/db_xref="GeneID:12215979"
CDS 286546..287913
/locus_tag="CDBI1_01160"
/note="COG0034 Glutamine phosphoribosylpyrophosphate
amidotransferase"
/codon_start=1
/transl_table=11
/product="amidophosphoribosyltransferase"
/protein_id="YP_006197400.1"
/db_xref="GI:384359548"
/db_xref="GeneID:12215979"
/translation="MCGVLGIYSNKDVTKELYYSLYSMQHRGQESCGLALLDDGEIKY
KKDMGLVGDVFKENELSKLKGNIGIGHVRYSTAGGSHVSNCQPLVGSCRKRQLAIAHN
GNLVNANYLKDMLEEDGYMFQTNSDTEVILYILARYYKGDIVESLKVTMDYIKGAYAL
VIMSQEELVAVRDPHGFRPLVLGKKGDEYIFASENCAIDILGGEVIRDVEPGEIIVVK
DGELKSYFYSENYKPVKKSCIFEHIYFARNDATIDNVNAYEFRIKCGERLAQNETVKA
DMVVPVPDSGWPGAIGYANASGLKISEGLVKNRYVGRTFIKPTQEEREIAVKIKLNPL
STIIKGKSIILVDDSIVRGTTSKQLVKSLREAGAKEIHLRITSPPVAYSCYYGIDTPN
RSKLIASSNNVEEMREYIGCDSLKFLDIEGMLDATEHKSTFCKACFDGEYPVKKIDKE
ELLSC"
misc_feature 286549..287874
/locus_tag="CDBI1_01160"
/note="amidophosphoribosyltransferase; Region: purF;
TIGR01134"
/db_xref="CDD:213588"
misc_feature 286549..287304
/locus_tag="CDBI1_01160"
/note="Glutamine amidotransferases class-II (GN-AT)_GPAT-
type. This domain is found at the N-terminus of glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase) . The glutaminase domain catalyzes amide
nitrogen transfer from glutamine to the...; Region:
GPATase_N; cd00715"
/db_xref="CDD:48479"
misc_feature order(286549..286551,286624..286629,286762..286764,
286849..286854,286924..286926)
/locus_tag="CDBI1_01160"
/note="active site"
/db_xref="CDD:48479"
misc_feature order(286597..286602,286609..286611,286630..286632,
286813..286815,286930..286932,286939..286944,
286951..286956)
/locus_tag="CDBI1_01160"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:48479"
misc_feature 287335..287673
/locus_tag="CDBI1_01160"
/note="Phosphoribosyl transferase (PRT)-type I domain;
Region: PRTases_typeI; cd06223"
/db_xref="CDD:206754"
misc_feature order(287392..287394,287398..287400,287584..287592,
287596..287610)
/locus_tag="CDBI1_01160"
/note="active site"
/db_xref="CDD:206754"
gene 287907..288983
/locus_tag="CDBI1_01165"
/db_xref="GeneID:12215980"
CDS 287907..288983
/locus_tag="CDBI1_01165"
/note="COG0150 Phosphoribosylaminoimidazole (AIR)
synthetase"
/codon_start=1
/transl_table=11
/product="phosphoribosylformylglycinamidine cyclo-ligase"
/protein_id="YP_006197401.1"
/db_xref="GI:384359549"
/db_xref="GeneID:12215980"
/translation="MLTYKESGVDIDEGNRAVDLIKGKIKGTYDGNVVGDLGNFSGLY
SLKDFVGMKEPVLLASTDGVGTKLKIAQMMDKHDTVGIDLVAMCVNDLICQGAKPLFF
LDYIALGKLVPEHIEKIVGGIADGCKMSGCALIGGETAEMPGMYGEDDYDLAGFSVGI
ADKEKIVSGNNVKSGDVLVGISSSGVHSNGFSFIRKIFLETYNYKMEQYVEELGMTVG
EALLTPTKIYVKLALDVLAKHDIKAIAHITGGGLIENITRVIPKGLGLDINKKSWEKP
PIFKMIEGFNAVDERELHKSFNMGIGLVLIVDKENADDVVNFINNRENDNAAYVDKKY
SELLEDKAYIIGEVVDSHEGVELC"
misc_feature 287910..288950
/locus_tag="CDBI1_01165"
/note="phosphoribosylaminoimidazole synthetase;
Provisional; Region: PRK05385"
/db_xref="CDD:180049"
misc_feature 288009..288953
/locus_tag="CDBI1_01165"
/note="PurM (Aminoimidazole Ribonucleotide [AIR]
synthetase), one of eleven enzymes required for purine
biosynthesis, catalyzes the conversion of
formylglycinamide ribonucleotide (FGAM) and ATP to AIR,
ADP, and Pi, the fifth step in de novo purine
biosynthesis; Region: PurM; cd02196"
/db_xref="CDD:100032"
misc_feature order(288024..288038,288072..288083,288087..288089,
288093..288095,288111..288113,288177..288179,
288189..288191,288207..288209,288216..288218,
288225..288227,288318..288320,288330..288332,
288336..288338,288357..288362,288372..288374,
288678..288680)
/locus_tag="CDBI1_01165"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100032"
misc_feature order(288177..288179,288312..288320)
/locus_tag="CDBI1_01165"
/note="putative ATP binding site [chemical binding]; other
site"
/db_xref="CDD:100032"
gene 288977..289570
/locus_tag="CDBI1_01170"
/db_xref="GeneID:12215981"
CDS 288977..289570
/locus_tag="CDBI1_01170"
/note="COG0299 Folate-dependent phosphoribosylglycinamide
formyltransferase PurN"
/codon_start=1
/transl_table=11
/product="phosphoribosylglycinamide formyltransferase"
/protein_id="YP_006197402.1"
/db_xref="GI:384359550"
/db_xref="GeneID:12215981"
/translation="MLNIGVLISGGGTNLQAVIDGTESGEIKGQVKVVISSKQGAYGL
ERAKNHNIKAICETDEDKIIEILKENKIDLVVLAGYLKIISPKLVNEFRNKMINIHPS
LIPSFCGAGFYGEKVHQGVIDYGAKVTGATVHFVDEGADTGPIIMQDVVKVNQDDDAK
TLAKRVLEVEHRILKESISLFCENKLKLQGRRVFINE"
misc_feature 288977..289561
/locus_tag="CDBI1_01170"
/note="phosphoribosylglycinamide formyltransferase;
Reviewed; Region: purN; PRK05647"
/db_xref="CDD:180182"
misc_feature 288983..289519
/locus_tag="CDBI1_01170"
/note="Phosphoribosylglycinamide formyltransferase (GAR
transformylase, GART); Region: FMT_core_GART; cd08645"
/db_xref="CDD:187714"
misc_feature order(288998..289000,289013..289021,289205..289228,
289241..289243,289268..289279,289316..289318,
289376..289378,289382..289387,289394..289399,
289484..289486)
/locus_tag="CDBI1_01170"
/note="active site"
/db_xref="CDD:187714"
misc_feature order(289013..289018,289208..289213,289271..289273,
289277..289279,289484..289486)
/locus_tag="CDBI1_01170"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187714"
misc_feature order(289205..289207,289214..289216,289220..289228,
289241..289243,289268..289270,289382..289387,
289394..289399)
/locus_tag="CDBI1_01170"
/note="cosubstrate binding site; other site"
/db_xref="CDD:187714"
misc_feature order(289268..289270,289274..289276,289397..289399)
/locus_tag="CDBI1_01170"
/note="catalytic site [active]"
/db_xref="CDD:187714"
gene 289563..291095
/gene="purH"
/locus_tag="CDBI1_01175"
/db_xref="GeneID:12215982"
CDS 289563..291095
/gene="purH"
/locus_tag="CDBI1_01175"
/EC_number="3.5.4.10"
/note="COG0138 AICAR transformylase/IMP cyclohydrolase
PurH (only IMP cyclohydrolase domain in Aful)"
/codon_start=1
/transl_table=11
/product="bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase"
/protein_id="YP_006197403.1"
/db_xref="GI:384359551"
/db_xref="GeneID:12215982"
/translation="MSKRALISVTDKTGVVEFAKELNKLDYEIISTGNTFKTLKENGV
NVMQVEDVTNFPEILDGRVKTLNPYIHGGILYKRDKESHVETVNEHKIHSIDLVAVNL
YDFEGTLKAGKSHDEIIENIDIGGPSMIRSAAKNYKDVIVVVDIKDYDSIIEKLKTDT
MTLEDRKKLSYKAFSTTGRYDALISSYFAGEVGDTYPDILNLTFQKEQTLRYGENPHQ
NGFLYSQSNAKNPILNYEQLGGKELSFNNLNDLHGCLEVMREFKDSEEVVSVAIKHAN
SCGVGLGKDAFEAYTKCYEADKVSIFGGIVGITSTIDKATAEKLNEIFLEIVVAYDFE
PEALEVLKQKKNLRILKLAKIEDSLQPYEMKYLDGKLLIQDRNNILAEKSENVTKAKP
TDAQLKDMEFGMRVVKNMKSNAIAIVKNGQTLALGCGQTSRIWALKNALENNKDKDFT
GAVLASDAFFPFDDCVTLAHEYGISAVVQPGGSIKDKDSIEACDKYDMVMVFTGIRHF
KH"
misc_feature 289563..291092
/gene="purH"
/locus_tag="CDBI1_01175"
/note="bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase; Provisional; Region:
purH; PRK00881"
/db_xref="CDD:179152"
misc_feature 289569..290126
/gene="purH"
/locus_tag="CDBI1_01175"
/note="Inosine monophosphate cyclohydrolase domain. This
is the N-terminal domain in the purine biosynthesis
pathway protein ATIC (purH). The bifunctional ATIC protein
contains a C-terminal ATIC formylase domain that
formylates...; Region: IMPCH; cd01421"
/db_xref="CDD:29633"
misc_feature order(289590..289592,289596..289598,289656..289658,
289665..289667,289752..289757,289863..289865,
289929..289931)
/gene="purH"
/locus_tag="CDBI1_01175"
/note="purine monophosphate binding site [chemical
binding]; other site"
/db_xref="CDD:29633"
misc_feature order(289725..289727,289734..289739,289746..289751,
289758..289766,289773..289778,289785..289787,
289926..289934,289941..289943,289953..289958,
289965..289967,290061..290063,290070..290078,
290100..290108,290112..290117,290124..290126)
/gene="purH"
/locus_tag="CDBI1_01175"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29633"
misc_feature order(289752..289754,289929..289931)
/gene="purH"
/locus_tag="CDBI1_01175"
/note="putative catalytic residues [active]"
/db_xref="CDD:29633"
misc_feature 289959..290888
/gene="purH"
/locus_tag="CDBI1_01175"
/note="AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas;
smart00798"
/db_xref="CDD:197879"
misc_feature <290901..291092
/gene="purH"
/locus_tag="CDBI1_01175"
/note="AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas;
cl03362"
/db_xref="CDD:198815"
gene 291106..292356
/locus_tag="CDBI1_01180"
/db_xref="GeneID:12215983"
CDS 291106..292356
/locus_tag="CDBI1_01180"
/note="COG0151 Phosphoribosylamine-glycine ligase"
/codon_start=1
/transl_table=11
/product="phosphoribosylamine--glycine ligase"
/protein_id="YP_006197404.1"
/db_xref="GI:384359552"
/db_xref="GeneID:12215983"
/translation="MKILVVGGGGREHAICWKLSKEKNVEKVYCAPGNAGITNVAECV
NIGDTNIEELLKFAKENEIGLTIVGPEVPLVMGIVDEFEKEGLRVFGPNKKCAQLEGS
KAFSKEFMIKHNIPTAKYKEYTNLEEAISEIDSFGYPVVIKADGLAAGKGVVIPENRE
DAIATLKEMMSDKKFGAAGDKIVIEEFLKGIETSILAFVDNDTIVPMASAKDHKKVNN
YEQGPNTGGMGTFSPSEIYTEELANKVKETVLEKTLEGFKKDGLNFKGILFVGLMITE
DGEKVLEYNVRFGDPETQSVLFRLETDLHEIMETILDNKLKDIEINYSDDEAVCVMLT
SGGYPDSYEKGKIITGLENLDDDIVVFHSGTKMLDGNLVTNGGRVIGITAKSTTVKDA
AEKVYENIKKINFEGMHYRTDIGR"
misc_feature 291106..292350
/locus_tag="CDBI1_01180"
/note="phosphoribosylamine--glycine ligase; Provisional;
Region: PRK00885"
/db_xref="CDD:179154"
misc_feature 291106..291405
/locus_tag="CDBI1_01180"
/note="Phosphoribosylglycinamide synthetase, N domain;
Region: GARS_N; pfam02844"
/db_xref="CDD:202429"
misc_feature 291406..291984
/locus_tag="CDBI1_01180"
/note="Phosphoribosylglycinamide synthetase, ATP-grasp (A)
domain; Region: GARS_A; pfam01071"
/db_xref="CDD:201585"
misc_feature 292087..292353
/locus_tag="CDBI1_01180"
/note="Phosphoribosylglycinamide synthetase, C domain;
Region: GARS_C; pfam02843"
/db_xref="CDD:202428"
gene 292381..296187
/locus_tag="CDBI1_01185"
/db_xref="GeneID:12215984"
CDS 292381..296187
/locus_tag="CDBI1_01185"
/note="'COG0046 Phosphoribosylformylglycinamidine (FGAM)
synthase, synthetase domain'"
/codon_start=1
/transl_table=11
/product="formylglycinamidine ribonucleotide synthetase"
/protein_id="YP_006197405.1"
/db_xref="GI:384359553"
/db_xref="GeneID:12215984"
/translation="MLNTENKDSMVRRVLVEKREGFDLEAKALKKDLVESLHIDNIEN
LRILNRYDVEGISEEVYENAAKTIFSEPNLDVVYYEEIPKLNDERVFAIEFLPGQYDQ
RGDWAAQCVQIVNQGIRPAINTAKVYILSGKITDEEFSKIKDYCINPVDSREASLEKP
ETLKMETEIPTTVEVLDGFIDLDENGLRTFVSEKGLAMTLGDLQHVQKYFKDTEKRNP
TITEIKVLDTYWSDHCRHTTFMTEIENVKIEDGKFNDIVKEAYQMYLNSRDNVYVNRH
KDICLMDIATVAVKELKKNGKLNDLDESEEINACSINVDVEVDGKMEKYLVMFKNETH
NHPTEIEPFGGAATCLGGAIRDPLSGRSYVYQAMRVTGSADPRTTLEDTLPGKLMQRK
ITTEAAHGYSSYGNQIGLTTGQVAEVYDENFVAKRMEIGAVIAAVPKENVVRERPEAG
DVIVLLGGKTGRDGCGGATGSSKEHSEESILTCSAEVQKGDAPNERKIQRFFRNKEVA
QMIKRCNDFGAGGVCVAIGEIADSLDINLDLVPKKYDGLDGTELAISESQERMAVAIK
KENKDKFIQLAVEENLEATHVATVTDTGYLRMFWNGKAIVDINREFLDTNGVKQTTDV
HVTKVDEENTFFSSNEIVKDVKCASMKDKFTKVLSDLNVCSQKGLVEMFDNTIGGNTV
LMPFGGKYQATPTQGMVAKIPVLGGETNTSTIMTYGYNPKVGKWSPFHGALYAVVESV
CKLVAIGGNYSTTRLTFQEYFEKLGNNPEKWGKPFSALLGAFYAQSKFEIPAIGGKDS
MSGTFKDIEVPPTLVSFAVDTVDAKKVVSPEFKKADSKVVMLCVNKAENDVVDFEELK
RNLDKVRELIHGNKVLSTYALGFAGVGEAISKMAFGNKIGFKFSEEAEKTFTDDKLFE
ASYGNIVLELANDDLCMLEGYNYVVLGSTTKEASIFIKGEELALDELYKAHCSTLEPI
FPTKTEEVKSKIETISYISQGEAKKSSLSIATPRVFIPAFPGTNCEYDSARAFERVGA
NANIRVFKNLTYKDIEDSIDTIVNEIKSSQIIMLPGGFSAGDEPDGSGKFIATVFRNP
RVQEAINEFLTQKDGLMLGICNGFQVLIKLGLVPYGEIRVPSESAPTLTYNNIGRHQA
KIARTRISSNKSPWLAQTNVGDIHNIAISHGEGKFVASEDVMRELIANGQVATQYVDF
NNEATYDIEFNPNGSFYAVEGITSADGRVFGKMGHSERIGEEVFKNIIGEKDQKIFES
GVKYFR"
misc_feature 292414..296181
/locus_tag="CDBI1_01185"
/note="phosphoribosylformylglycinamidine synthase, clade
II; Region: FGAM-synthase; TIGR01857"
/db_xref="CDD:130916"
misc_feature 293044..>293127
/locus_tag="CDBI1_01185"
/note="AIR (aminoimidazole ribonucleotide) synthase
related protein. This family includes Hydrogen
expression/formation protein HypE, AIR synthases, FGAM
(formylglycinamidine ribonucleotide) synthase and
Selenophosphate synthetase (SelD). The N-terminal
domain...; Region: PurM-like; cl10019"
/db_xref="CDD:214167"
misc_feature 293353..294204
/locus_tag="CDBI1_01185"
/note="PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), first repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP; Region:
PurL_repeat1; cd02203"
/db_xref="CDD:100034"
misc_feature order(293356..293367,293371..293373,293446..293448,
293476..293478,293485..293487,293494..293496,
293626..293628,293659..293664,293674..293676)
/locus_tag="CDBI1_01185"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100034"
misc_feature order(293434..293436,293446..293448,293620..293628)
/locus_tag="CDBI1_01185"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100034"
misc_feature 294466..295209
/locus_tag="CDBI1_01185"
/note="PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), second repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP; Region:
PurL_repeat2; cd02204"
/db_xref="CDD:100035"
misc_feature order(294514..294525,294529..294531,294604..294606,
294643..294645,294652..294654,294661..294663,
294766..294768,294808..294813,294823..294825)
/locus_tag="CDBI1_01185"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:100035"
misc_feature order(294592..294594,294604..294606,294760..294768)
/locus_tag="CDBI1_01185"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:100035"
misc_feature 295399..296172
/locus_tag="CDBI1_01185"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain found in Formylglycinamide ribonucleotide
amidotransferase; Region: GATase1_FGAR_AT; cd01740"
/db_xref="CDD:153211"
misc_feature order(295579..295584,295594..295596,295705..295707,
295717..295719,295903..295908,296089..296091,
296095..296106)
/locus_tag="CDBI1_01185"
/note="putative active site [active]"
/db_xref="CDD:153211"
misc_feature order(295705..295707,296095..296097,296101..296103)
/locus_tag="CDBI1_01185"
/note="catalytic triad [active]"
/db_xref="CDD:153211"
gene 296393..297265
/locus_tag="CDBI1_01190"
/db_xref="GeneID:12215985"
CDS 296393..297265
/locus_tag="CDBI1_01190"
/note="COG1091 dTDP-4-dehydrorhamnose reductase"
/codon_start=1
/transl_table=11
/product="dtdp-4-dehydrorhamnose reductase"
/protein_id="YP_006197406.1"
/db_xref="GI:384359554"
/db_xref="GeneID:12215985"
/translation="MKILITGSNGQLGKELVSQLEAINQSINQPKYVILATTRNDLDI
SNQTNIDNFILHNKPDVIVNCAAYTKVDACEDNIEIAYKINALGVRNLAIASEKVNAK
LVHISTDYVFNGFSKYPYREDNKTEPNSVYGKSKLMGEKFVEQFSHKYFILRTAWLYG
NGNNFVKTMIKLSLENKEVNVVNDQFGTPTSTVDLAKIIIRIMETEHYGVYHATCEGE
CSWYDFAKKIFELKNIDIKVNPIKSNEFKCKAQRPLYSVLDNFMLKLIGLNSFRKWEE
SIEEYLERYDINEK"
misc_feature 296396..297226
/locus_tag="CDBI1_01190"
/note="dTDP-6-deoxy-L-lyxo-4-hexulose reductase and
related proteins, extended (e) SDRs; Region:
dTDP_HR_like_SDR_e; cd05254"
/db_xref="CDD:187564"
misc_feature 296399..297247
/locus_tag="CDBI1_01190"
/note="RmlD substrate binding domain; Region:
RmlD_sub_bind; pfam04321"
/db_xref="CDD:113104"
misc_feature order(296411..296413,296417..296428,296504..296509,
296516..296527,296585..296593,296597..296599,
296642..296644,296708..296716,296786..296788,
296798..296800,296855..296866)
/locus_tag="CDBI1_01190"
/note="NADP binding site [chemical binding]; other site"
/db_xref="CDD:187564"
misc_feature order(296645..296647,296714..296716,296786..296788,
296798..296800)
/locus_tag="CDBI1_01190"
/note="active site"
/db_xref="CDD:187564"
misc_feature order(296714..296716,296786..296788,296861..296863,
296897..296899,296933..296935,296951..296953)
/locus_tag="CDBI1_01190"
/note="putative substrate binding site [chemical binding];
other site"
/db_xref="CDD:187564"
gene 297374..298255
/locus_tag="CDBI1_01195"
/db_xref="GeneID:12215986"
CDS 297374..298255
/locus_tag="CDBI1_01195"
/note="COG1209 dTDP-glucose pyrophosphorylase"
/codon_start=1
/transl_table=11
/product="glucose-1-phosphate thymidylyltransferase"
/protein_id="YP_006197407.1"
/db_xref="GI:384359555"
/db_xref="GeneID:12215986"
/translation="MKGIILAGGSGTRLYPITKCISKQTLPIYDKPMIYYPMSVLMLA
GIQDILIISTPRDIKAFEELFGDGSSLGLKITYAIQEKANGIAEAFIIGEEFIGNDRV
SLVLGDNIFYGYGFSERLENAVKRKGATIFGYHVSNPNSFGVVEFDKDFNVLSIEEKP
TVPKSNYAIPGLYFYDNDVVEIAKLVEPSDRGELEITSINSEYLKRGKLKVELLGRGM
AWLDTGTHKGLLDASNYVEVVQTRQGLYIACLEEIAYTKGYISREQLMKLAKPLIKTE
YGQYLLKLASEDMQYGR"
misc_feature 297374..298090
/locus_tag="CDBI1_01195"
/note="G1P_TT_short is the short form of
glucose-1-phosphate thymidylyltransferase; Region:
G1P_TT_short; cd02538"
/db_xref="CDD:133019"
misc_feature 297377..298228
/locus_tag="CDBI1_01195"
/note="glucose-1-phosphate thymidylyltransferase, short
form; Region: rmlA; TIGR01207"
/db_xref="CDD:130274"
misc_feature order(297389..297391,297395..297400,297611..297613,
297620..297631,297695..297697,297800..297802,
297845..297850,297878..297880,297962..297964)
/locus_tag="CDBI1_01195"
/note="substrate binding site; other site"
/db_xref="CDD:133019"
misc_feature order(297407..297409,297416..297424,297431..297436,
297446..297454,297458..297469,297476..297478,
297551..297553,297707..297712,297773..297784,
297794..297799,298031..298039,298049..298054,
298061..298063,298070..298078,298085..298090)
/locus_tag="CDBI1_01195"
/note="tetramer interface; other site"
/db_xref="CDD:133019"
gene 298292..298849
/locus_tag="CDBI1_01200"
/db_xref="GeneID:12215987"
CDS 298292..298849
/locus_tag="CDBI1_01200"
/note="'COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and
related enzymes'"
/codon_start=1
/transl_table=11
/product="dtdp-4-dehydrorhamnose 3,5-epimerase"
/protein_id="YP_006197408.1"
/db_xref="GI:384359556"
/db_xref="GeneID:12215987"
/translation="MGKINVIKTKIEGLYIVEPNVFCDERGYFMESYNKKDFIEQGLD
MCFIQDNESSSRKGVLRGMHFQVRYPQGKLVRVTEGEVFDVAVDLRKDSQTFGKWEGV
ILSDKNKKQFYIPEGFAHGFLVLSEKAVFNYKCTNYYYPEFEHGFIWNDKQISIEWPL
KGIEEIFLSEKDKKQKSFKDICIRR"
misc_feature 298307..298831
/locus_tag="CDBI1_01200"
/note="dTDP-4-dehydrorhamnose 3,5-epimerase; Region:
dTDP_sugar_isom; pfam00908"
/db_xref="CDD:144487"
gene 298887..299870
/locus_tag="CDBI1_01205"
/db_xref="GeneID:12215988"
CDS 298887..299870
/locus_tag="CDBI1_01205"
/note="'COG1088 dTDP-D-glucose 4,6-dehydratase'"
/codon_start=1
/transl_table=11
/product="dtdp-glucose 4,6-dehydratase"
/protein_id="YP_006197409.1"
/db_xref="GI:384359557"
/db_xref="GeneID:12215988"
/translation="MKKILITGGAGFIGSNFVHYMLNKYVDYFIVNLDLLTYAGNLET
LIEIQDSSNYKFVKGDISNREQMYKLFEEERFDIVVNFAAESHVDRSVENPDLFIKTN
IIGTQVLLDASIKYGVKRYHQISTDEVYGDLPIDRKDLFFTEQSPINPSSPYSASKAS
ADLLVSSYYRTYGLLTTISRCSNNYGPYHFPEKLIPLMILNALENKQLPVYGNGENVR
DWLHVYDHCTAIDLIIHKGNIGEIYNIGGHNERSNLEVVKMILNLLDKSEELISYVND
RPGHDLRYAIDATKIENELGWKAKYDFDLGIKETVKWYIENESWWKAVLSV"
misc_feature 298890..299864
/locus_tag="CDBI1_01205"
/note="dTDP-D-glucose 4,6-dehydratase [Cell envelope
biogenesis, outer membrane]; Region: RfbB; COG1088"
/db_xref="CDD:31285"
misc_feature 298890..299843
/locus_tag="CDBI1_01205"
/note="dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs;
Region: dTDP_GD_SDR_e; cd05246"
/db_xref="CDD:187557"
misc_feature order(298908..298910,298914..298925,298986..298997,
299001..299006,299061..299069,299130..299138,
299142..299144,299187..299189,299256..299264,
299346..299348,299358..299360,299427..299438)
/locus_tag="CDBI1_01205"
/note="NAD binding site [chemical binding]; other site"
/db_xref="CDD:187557"
misc_feature order(299142..299150,299262..299270,299346..299348,
299427..299435,299460..299468,299475..299480,
299511..299519,299532..299534,299538..299540,
299643..299645,299715..299717,299724..299726,
299736..299738)
/locus_tag="CDBI1_01205"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:187557"
misc_feature order(299154..299156,299160..299162,299169..299174,
299181..299183,299193..299198,299205..299207,
299217..299219,299226..299228,299280..299282,
299319..299321,299325..299330,299334..299345,
299352..299354,299361..299366,299373..299378,
299385..299390,299394..299402,299727..299729)
/locus_tag="CDBI1_01205"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:187557"
misc_feature order(299190..299192,299262..299264,299346..299348,
299358..299360)
/locus_tag="CDBI1_01205"
/note="active site"
/db_xref="CDD:187557"
gene 299909..300577
/locus_tag="CDBI1_01210"
/db_xref="GeneID:12215989"
CDS 299909..300577
/locus_tag="CDBI1_01210"
/note="COG0741 Soluble lytic murein transglycosylase and
related regulatory proteins (some contain LysM/invasin
domains)"
/codon_start=1
/transl_table=11
/product="transglycosylase"
/protein_id="YP_006197410.1"
/db_xref="GI:384359558"
/db_xref="GeneID:12215989"
/translation="MNEISSLINILALTQLSGSNTTNQCNCTYNSSSGFDMIMMTLLK
ALSQNNQQTSNGYNLSSNSENLFDELGSVVNNTASRFIDVDTKDKSVKSRIENAIEQA
SKKYNVDSNLIKAIIKVESDFNPNTVSSAGAKGLMQLMPENCRDLGVTDPFNIEQNID
AGTRHIKEYIDMFGGSIEMGLMAYNGGPGRMKSRGVESISDLYKMPKETQNYIPKVMK
YYRG"
misc_feature <300107..300568
/locus_tag="CDBI1_01210"
/note="Soluble lytic murein transglycosylase and related
regulatory proteins (some contain LysM/invasin domains)
[Cell envelope biogenesis, outer membrane]; Region: MltE;
COG0741"
/db_xref="CDD:31084"
misc_feature 300239..300571
/locus_tag="CDBI1_01210"
/note="Lytic Transglycosylase (LT) and Goose Egg White
Lysozyme (GEWL) domain. Members include the soluble and
insoluble membrane-bound LTs in bacteria, the LTs in
bacteriophage lambda, as well as, the eukaryotic
'goose-type' lysozymes (GEWL). LTs catalyze...; Region:
LT_GEWL; cd00254"
/db_xref="CDD:29556"
misc_feature order(300266..300268,300326..300328,300401..300403,
300458..300460)
/locus_tag="CDBI1_01210"
/note="N-acetyl-D-glucosamine binding site [chemical
binding]; other site"
/db_xref="CDD:29556"
misc_feature 300266..300268
/locus_tag="CDBI1_01210"
/note="catalytic residue [active]"
/db_xref="CDD:29556"
gene 300586..301014
/locus_tag="CDBI1_01215"
/db_xref="GeneID:12215990"
CDS 300586..301014
/locus_tag="CDBI1_01215"
/note="COG1728 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197411.1"
/db_xref="GI:384359559"
/db_xref="GeneID:12215990"
/translation="MGINIDKLNISPSINMEVKKLKESNKFSDKLNSLKQSSSLEDIK
RNLESVKKAGERLVLTQNYGDISIYKNAVKEYLKSVVDNMYSLDKNSSFWEHQYYKNV
KIVDSKLEDMTSKLISEEKENIDIVSTVDMIQGLLIDMYR"
misc_feature 300586..301011
/locus_tag="CDBI1_01215"
/note="Protein of unknown function (DUF327); Region:
DUF327; pfam03885"
/db_xref="CDD:190781"
gene 301038..301352
/locus_tag="CDBI1_01220"
/db_xref="GeneID:12215991"
CDS 301038..301352
/locus_tag="CDBI1_01220"
/note="COG1886 Flagellar motor switch/type III secretory
pathway protein"
/codon_start=1
/transl_table=11
/product="flagellar motor switch protein"
/protein_id="YP_006197412.1"
/db_xref="GI:384359560"
/db_xref="GeneID:12215991"
/translation="MNSKKEDIYELNFGQLIEEKSGVIEENQNVFNAKVNVAVSIGNT
TETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESIITNEKLSVRLSKIEDSD
VN"
misc_feature 301119..301343
/locus_tag="CDBI1_01220"
/note="Surface presentation of antigens (SPOA); Region:
SpoA; pfam01052"
/db_xref="CDD:201573"
gene 301504..301779
/locus_tag="CDBI1_01225"
/db_xref="GeneID:12215992"
CDS 301504..301779
/locus_tag="CDBI1_01225"
/note="COG2747 Negative regulator of flagellin synthesis
(anti-sigma28 factor)"
/codon_start=1
/transl_table=11
/product="negative regulator of flagellin synthesis"
/protein_id="YP_006197413.1"
/db_xref="GI:384359561"
/db_xref="GeneID:12215992"
/translation="MDIKNVSSNIVVNNYLKNTSGVKKVEEVKKINKTDKIELSKFAK
EMASVSNMSDENIRNKKVDEIKNALENGTYKIKPKEIAKKMIEDMRG"
misc_feature 301606..301770
/locus_tag="CDBI1_01225"
/note="Anti-sigma-28 factor, FlgM; Region: FlgM;
pfam04316"
/db_xref="CDD:202970"
gene 301784..302200
/locus_tag="CDBI1_01230"
/db_xref="GeneID:12215993"
CDS 301784..302200
/locus_tag="CDBI1_01230"
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis protein"
/protein_id="YP_006197414.1"
/db_xref="GI:384359562"
/db_xref="GeneID:12215993"
/translation="MITDLKVIIYEEKNIISKMMELLKEQFDYIVEKDLENLNMLNPK
LEDISRELASIEIKRRQLFGDDISMSEVVENSNDRYLKEIYTDLKHILALAKNQQESN
DSLIKKELIFTKKMINFIKPADKQTATYNSYGNIRK"
misc_feature 301793..302194
/locus_tag="CDBI1_01230"
/note="FlgN protein; Region: FlgN; pfam05130"
/db_xref="CDD:203170"
gene 302218..303528
/locus_tag="CDBI1_01235"
/db_xref="GeneID:12215994"
CDS 302218..303528
/locus_tag="CDBI1_01235"
/note="COG1256 Flagellar hook-associated protein"
/codon_start=1
/transl_table=11
/product="putative flagellar hook-associated protein"
/protein_id="YP_006197415.1"
/db_xref="GI:384359563"
/db_xref="GeneID:12215994"
/translation="MAGLFSILNTANSGMNAHQKAIQTISHNISNLDTDGYSRQRTEF
ATNSPMYMPSLSNSIARGQLGTGVHVTDVTRARNSFYDYQFRAEAHKYGNTVSKYDYY
NTIETIINEPSDYGISAGIDDFFKGWESLAKDINSDSKKSLVVENASNLATLISESYK
KLNKLKGDIDDNINSEIKQINDMLKSLEDLNKSIDVISGSGSTPNDLLDERDRILDDL
SFKLDLENSDVKNMLSDGKLELNELKNADGTWKTGVSGTLQGLFEMHGKIDTYKSDLK
DVSDGLAKQINDVYNTSAGITVTDFFITSNVDGEDIIKVNPAIKSNPNELKLTADEAS
KIAKLKDEKIDIGVAGGKVSTISDHYKAFAESVGLDSQKVNQDEVNQRKIINNIDNSR
MSVSGVSLDEEMTELIKIQRSYQASAKVMSTAVQLLDVVINGII"
misc_feature 302218..303519
/locus_tag="CDBI1_01235"
/note="flagellar hook-associated protein FlgK; Validated;
Region: flgK; PRK07739"
/db_xref="CDD:181099"
misc_feature 302239..302328
/locus_tag="CDBI1_01235"
/note="Flagella basal body rod protein; Region:
Flg_bb_rod; pfam00460"
/db_xref="CDD:109515"
misc_feature <303379..303516
/locus_tag="CDBI1_01235"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene 303547..304479
/locus_tag="CDBI1_01240"
/db_xref="GeneID:12215995"
CDS 303547..304479
/locus_tag="CDBI1_01240"
/note="COG1344 Flagellin and related hook-associated
proteins"
/codon_start=1
/transl_table=11
/product="flagellar hook-associated protein"
/protein_id="YP_006197416.1"
/db_xref="GI:384359564"
/db_xref="GeneID:12215995"
/translation="MRVSTGMMSSNYLNSLQDNLQRLDKVNRQVNTTKEINKLSDNPY
KAIKILNSKSEIKTMETYVENCKDTGNWLETTDTALDQLGKLLSDIKKTLVASGDGAY
SDDELKTLSNETNEKMKEIANALNATHEGKYIFSGSNTGVPPVECIDNADGSVSLKFN
SSLNLNKLNDSLSMDIAQGISVDYNVKLSSLGFDPTKTDPFEELNNISKKLANPDADA
IKELTTTCLGDMEQLIENTVNVRSIYGTKANTVEAMKEKNDDSLIQLKDILSQNEEID
YGEKLVQLKAAELTYQASLQTGGKLFNVSILDYI"
misc_feature 303547..304473
/locus_tag="CDBI1_01240"
/note="flagellar hook-associated protein FlgL; Validated;
Region: flgL; PRK07701"
/db_xref="CDD:181087"
misc_feature 303553..303966
/locus_tag="CDBI1_01240"
/note="Bacterial flagellin N-terminal helical region;
Region: Flagellin_N; pfam00669"
/db_xref="CDD:144315"
gene 304498..304887
/locus_tag="CDBI1_01245"
/db_xref="GeneID:12215996"
CDS 304498..304887
/locus_tag="CDBI1_01245"
/note="COG1699 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="flagellar assembly factor fliW"
/protein_id="YP_006197417.1"
/db_xref="GI:384359565"
/db_xref="GeneID:12215996"
/translation="MKVTLKKGILGFENLKEYELLDIEDNDSLKEFNSTEEEGIGFVV
VSPFEIINEYEIVLNQETIEKLEVKSPKDVVLFNIITLGQTFEESTVNMKAPIVINIK
TNFGMQIILQDDKYSIRHPLLRGDNGC"
misc_feature 304507..304866
/locus_tag="CDBI1_01245"
/note="FliW protein; Region: FliW; pfam02623"
/db_xref="CDD:202316"
gene 304881..305093
/locus_tag="CDBI1_01250"
/db_xref="GeneID:12215997"
CDS 304881..305093
/locus_tag="CDBI1_01250"
/note="COG1551 Carbon storage regulator (could also
regulate swarming and quorum sensing)"
/codon_start=1
/transl_table=11
/product="carbon storage regulator"
/protein_id="YP_006197418.1"
/db_xref="GI:384359566"
/db_xref="GeneID:12215997"
/translation="MLVISRKKDEAVLIGESIEVKIVGVDGNNVKLAISAPNNISILR
KEIYEKVKSENIKATNKNIKILKSLK"
misc_feature 304881..305042
/locus_tag="CDBI1_01250"
/note="Global regulator protein family; Region: CsrA;
pfam02599"
/db_xref="CDD:202301"
gene 305115..305510
/locus_tag="CDBI1_01255"
/db_xref="GeneID:12215998"
CDS 305115..305510
/locus_tag="CDBI1_01255"
/note="COG1516 Flagellin-specific chaperone FliS"
/codon_start=1
/transl_table=11
/product="flagellar protein FliS"
/protein_id="YP_006197419.1"
/db_xref="GI:384359567"
/db_xref="GeneID:12215998"
/translation="MYGENPYNSYKQNAVFMASKEQLLLMLVDGAVKYTKIARAAILD
KNTQKAHRELVRVQDIFTELMVTLDQNAGQWAKDMYKVYDFVRYELSRANIRKDIQVI
DNVLPVIEQIKDTWHEADKKSKEERSRYK"
misc_feature 305115..305498
/locus_tag="CDBI1_01255"
/note="Flagellin-specific chaperone FliS [Cell motility
and secretion / Intracellular trafficking and secretion /
Posttranslational modification, protein turnover,
chaperones]; Region: FliS; COG1516"
/db_xref="CDD:31705"
gene 305510..305866
/locus_tag="CDBI1_01260"
/db_xref="GeneID:12216078"
CDS 305510..305866
/locus_tag="CDBI1_01260"
/note="COG1516 Flagellin-specific chaperone FliS"
/codon_start=1
/transl_table=11
/product="flagellar protein"
/protein_id="YP_006197420.1"
/db_xref="GI:384359568"
/db_xref="GeneID:12216078"
/translation="MELNLAELDKLSKEELLLMLVDGTVKYTNISKEALLNNDYLKAH
NELIRVQNIFTELMTTLDQDAGQWAKDMYKVYEFIKSELAIADENKDIKIIDDILPIV
KQIRDTWHEVYNQLKI"
misc_feature <305573..305851
/locus_tag="CDBI1_01260"
/note="Flagellar protein FliS; Region: FliS; cl00654"
/db_xref="CDD:207152"
gene 305887..307410
/locus_tag="CDBI1_01265"
/db_xref="GeneID:12216079"
CDS 305887..307410
/locus_tag="CDBI1_01265"
/note="COG1345 Flagellar capping protein"
/codon_start=1
/transl_table=11
/product="flagellar cap protein"
/protein_id="YP_006197421.1"
/db_xref="GI:384359569"
/db_xref="GeneID:12216079"
/translation="MSSISPIRVTGLSGNFDMEGIIEASMIRDKEKVDKAKQEQQIVK
WKQEIYRNVIQESKDLYDKYLSVNSPNSIVSEKAYSSTRITSSDESIIVAKGSAGAEK
INYQFAVSQMAEPAKFTIKLNSSEPIVRQFPPNASGASSLTIGDVNIPISEQDTTSTI
VSKINSLCADNDIKASYSEMTGELIISRKQTGSSSDINLKVIGNDNLAQQIANDNGIT
FANDASGNKVASVYGKNLEADVTDEHGRVTHISKEQNSFNIDNIDYNVNSKGTAKLTS
VTDTEEAVKNMQAFVDDYNKLMDKVYGLVTTKKPKDYPPLTDAQKEDMTTEEIEKWEK
KAKEGILRNDDELRGFVEDIQSAFFGDGKNIIALRKLGINESENYNKKGQISFNADTF
SKALIDDSDKVYKTLAGYSSNYDDKGMFEKLKDIVYEYSGSSTSKLPKKAGIEKTASA
SENVYSKQIAEQERNISRLVEKMNDKEKRLYAKYSALESLLNQYSSQMNYFSQAQGN"
misc_feature 305905..307404
/locus_tag="CDBI1_01265"
/note="flagellar capping protein; Validated; Region: fliD;
PRK07737"
/db_xref="CDD:181097"
misc_feature 305923..306237
/locus_tag="CDBI1_01265"
/note="Flagellar hook-associated protein 2 C-terminus;
Region: FliD_N; pfam02465"
/db_xref="CDD:202247"
misc_feature 306583..307374
/locus_tag="CDBI1_01265"
/note="Flagellar hook-associated protein 2 C-terminus;
Region: FliD_C; pfam07195"
/db_xref="CDD:115824"
gene 307413..307748
/locus_tag="CDBI1_01270"
/db_xref="GeneID:12216080"
CDS 307413..307748
/locus_tag="CDBI1_01270"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197422.1"
/db_xref="GI:384359570"
/db_xref="GeneID:12216080"
/translation="MDKLKEKLNLYKDISLQIINLIEKEEYIKISSKLGERQEIINSV
SEIDRNDFIQLYNRMELIEIDSRIRDILQGQLLEVKKELHEYKLTKQVNTMYYNLNRE
KVNIFNKKV"
misc_feature 307464..307700
/locus_tag="CDBI1_01270"
/note="Flagellar protein FliT; Region: FliT; pfam05400"
/db_xref="CDD:203244"
gene 307850..308722
/locus_tag="CDBI1_01275"
/db_xref="GeneID:12216081"
CDS 307850..308722
/locus_tag="CDBI1_01275"
/note="COG1344 Flagellin and related hook-associated
proteins"
/codon_start=1
/transl_table=11
/product="flagellin subunit"
/protein_id="YP_006197423.1"
/db_xref="GI:384359571"
/db_xref="GeneID:12216081"
/translation="MRVNTNVSALIANNQMGRNVNAQSKSMEKLSSGVRIKRAADDAA
GLAISEKMRAQIKGLDQAGRNVQDGISVVQTAEGALEETGNILQRMRTLSVQSSNETN
TAEERQKIADELLQLKDEVERISSSIEFNGKKLLDGSSTEIRLQVGANFGTNVAGTTN
NNNEIKVALVNTSSIMSKAGITSSTIASLNADGTSGTDAAKQMVSSLDVALKELNTSR
AKLGAQQNRLESTQNNLNNTIENVTAAESRIRDTDVASEMVNLSKMNILVQASQSMLA
QANQQPQGVLQLLG"
misc_feature 307850..308716
/locus_tag="CDBI1_01275"
/note="flagellin; Provisional; Region: PRK12804"
/db_xref="CDD:183759"
misc_feature 307856..308272
/locus_tag="CDBI1_01275"
/note="Bacterial flagellin N-terminal helical region;
Region: Flagellin_N; pfam00669"
/db_xref="CDD:144315"
misc_feature 308459..308716
/locus_tag="CDBI1_01275"
/note="Bacterial flagellin C-terminal helical region;
Region: Flagellin_C; pfam00700"
/db_xref="CDD:144340"
gene 308737..310956
/locus_tag="CDBI1_01280"
/db_xref="GeneID:12216082"
CDS 308737..310956
/locus_tag="CDBI1_01280"
/note="COG0463 Glycosyltransferases involved in cell wall
biogenesis"
/codon_start=1
/transl_table=11
/product="glycosyltransferase"
/protein_id="YP_006197424.1"
/db_xref="GI:384359572"
/db_xref="GeneID:12216082"
/translation="MDIEERVRLCFTPFFFYKYTFERKIYMLLSIVMIVKNEEKILEK
TLKSLTTLRSSIESELIIVDTGSTDDTINISRKYTENVYFHNWNNDFSSMRNISISYA
KGEWLLILDADEILIDSSTIVKFFKDGLDKKFNSASIQLKNLYSYDKKLYGYCSVLRL
FKNIDFRYHGKVHEQPIYKNPIFNNVADFEHYGYLFEDEEIRLNKVKRNEKLLFEELK
ENDNSPYTNYQLGKNFIILGKYHEALYYLEKSYELYSKLESAPGYLITSLVKTYLYLG
KHKKCEKLCLKYIKKDMNNIDIYYYIAQAQVDLGKYENSIDSYKRYIYLLDNYEISTQ
ANSLFSDTDTVGLRDEAIITLIKIYYKLEKYESVISEYNNIEDMEKKKNVYFSLFMSL
YKLNRFEDIKNYYKEVSNSKIEKNSFYKNIEEVINNIKDDEKEHVYKILCDIEGNYGI
LNQIRINKCVSIDKCKEILNEEKEIIYAYIIKVAFEDKIDLLDIFYEMEYVWIEKYLK
YLLALERSFNLVLYKYIISRPNTSDIKKIRVYKAISKVVLESISLSDEKYKEIFYLYI
MYSYKYIRYIYRNLSDFELIKFVCNDLDKFTIEFKHLLDIKNKVNDANEKLEYIHSMR
KLLNEYPFYNKIIKILISELEENIKESEEFKDLKDSFIISIENMIETGKINDAKSLVD
DYSKTFMDDVKILNIKGILYMFENKLDKADFMLKKALSLDVENEDTIYNIEYLKSLR"
misc_feature 308821..>309354
/locus_tag="CDBI1_01280"
/note="Glycosyltransferase family A (GT-A) includes
diverse families of glycosyl transferases with a common
GT-A type structural fold; Region: Glyco_tranf_GTA_type;
cl11394"
/db_xref="CDD:212311"
misc_feature order(308836..308838,308842..308844,308923..308925,
309067..309069,309073..309075)
/locus_tag="CDBI1_01280"
/note="active site"
/db_xref="CDD:132997"
gene 310980..312857
/locus_tag="CDBI1_01285"
/db_xref="GeneID:12216083"
CDS 310980..312857
/locus_tag="CDBI1_01285"
/note="COG1216 Predicted glycosyltransferases"
/codon_start=1
/transl_table=11
/product="glycosyl transferase group 2 family protein"
/protein_id="YP_006197425.1"
/db_xref="GI:384359573"
/db_xref="GeneID:12216083"
/translation="MNTPIVVNEKSKDIIKDWQYTYTNEDIKFTSIIILTYNQIEYTK
LCIESIRKFTPKNKYEIIIIDNNSSDGTVEWLKGQSDIKSVYNNKNLGFPKGCNQGIE
LATGENILLLNNDVIVTPNWLYNLNKALWSQDNIGAVGPITNACSYYQQIDVDYKSIE
DMFMFAHKINTSNINLWKYRLKLVGFCMLIKKSVLDNVGVLDELFTPGNFEDDDLSFR
MLESGYKLLLCQDTFIHHFGSVSFKENRNKYTDIMYINRRKFETKWGFNPEYSGMIRT
DLISKIDDSLEANINVLEIGCGIGATLLEIKNIYKNASIYGIEISESAGKLAKYSADV
LIADIEKVKLDYEKDFFDYIILGDVLEHLTDPWKIVNELKQYLKKDGCLISSIPNIMH
VSVLRNLVLGNFTYEDSGILDKTHLRFFTLNEITKMFNDSNYIINSVTATSMPLSEID
NRFIDTMCKESCKEMRQQYESYQYIVKATKSIDTKRYSSISMVNLKYALMRIDNELDV
DSNLSYIFDNYNITEPCFVDDIEYLVDTFVINKATLLNRLGVEAFNRGLGDFSINMFM
TVLEMDRDDIDSIYNITSVLCELEEFDTAYNLIKNSSKKVQSESDIQDILYFIEGKRY
E"
misc_feature 311070..311825
/locus_tag="CDBI1_01285"
/note="Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane];
Region: WcaA; COG0463"
/db_xref="CDD:30811"
misc_feature 311073..311693
/locus_tag="CDBI1_01285"
/note="Subfamily of Glycosyltransferase Family GT2 of
unknown function; Region: GT_2_like_c; cd04186"
/db_xref="CDD:133029"
misc_feature order(311175..311177,311319..311324)
/locus_tag="CDBI1_01285"
/note="Probable Catalytic site; other site"
/db_xref="CDD:133029"
misc_feature order(311322..311324,311613..311615,311619..311621)
/locus_tag="CDBI1_01285"
/note="metal-binding site"
/db_xref="CDD:133029"
misc_feature 311808..312287
/locus_tag="CDBI1_01285"
/note="Methyltransferase domain; Region: Methyltransf_23;
pfam13489"
/db_xref="CDD:205667"
misc_feature 311850..312140
/locus_tag="CDBI1_01285"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(311862..311882,311934..311939,311988..311996,
312048..312050)
/locus_tag="CDBI1_01285"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 312850..314964
/locus_tag="CDBI1_01290"
/db_xref="GeneID:12216084"
CDS 312850..314964
/locus_tag="CDBI1_01290"
/note="COG0745 Response regulators consisting of a
CheY-like receiver domain and a winged-helix DNA-binding
domain"
/codon_start=1
/transl_table=11
/product="glycosyl transferase group 2 family protein"
/protein_id="YP_006197426.1"
/db_xref="GI:384359574"
/db_xref="GeneID:12216084"
/translation="MNNDKICFITCVNDERLYEECLVYINSLDIPKNFSIETVALRGA
DSIASAYNKAMRETDSKYKVYLHQDAFIINKNFIYDILEIFKKNTDVGMIGVAGVKDI
PVNGIWWDSDKKAGKVYDSHTGKMDIYEFSNFEECFNEVMAIDGLIMITQYDVFWRED
KFDGWHFYDLSQSMEFRQNKYKVIVPKQNKPWCMHDSGVANINNGYDEYRIKFVKEYI
NLDLYRENFYEFDKKKASTILKSNKHVMDCMKEELTEQLRLKNYKDVLDIVSKIAHFS
VFNHTGLYSCEKCERALLECANNLPEIENTKLFTKKDLKRRKVLHVLSEGYSTGGHTR
LVKNWIEIDKDSVHSVVTTWQSDTLPDWLLKAIDDSGGEVISLDLISDDYLKRAVALR
KIAYDWADIVILYVHMWDTIPVVAFGVDGKIPILHVNHYDSTFWLGTSIADIVIDFSE
ASQLITLDKRGIDKSEILPMPLKEKEVFSKSEVRKRYNLEDDVTIILTIASERKYNSV
NDINYFKIAKTLIENTDNTIIIVVGVDTENLYWKTLSNVTDNRVICFGTTANIDDFYK
ISDIYLESFMVGSHTSKLDAILYDLIPVKFKNEVSPIFTNMWNFIDKFDYKNIKEVID
MIRRYNTSEFDRDKIKEKQSEIKHFVIDKHCIEIKNYIDKIYKEANHHKVKYDLYKND
EIEDYQLFVALYGYMVKNKNMS"
misc_feature 312865..313500
/locus_tag="CDBI1_01290"
/note="Glycosyltransferase like family; Region:
Glyco_tranf_2_5; pfam13712"
/db_xref="CDD:205887"
gene 314973..315968
/locus_tag="CDBI1_01295"
/db_xref="GeneID:12216085"
CDS 314973..315968
/locus_tag="CDBI1_01295"
/note="COG2348 Uncharacterized protein involved in
methicillin resistance"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197427.1"
/db_xref="GI:384359575"
/db_xref="GeneID:12216085"
/translation="MNNIHINKFEKSCEKNWDYFVENKSINGTFLQTRNFLNYHEEGK
FTDHSLIIYKGEEILAVVPACETYENGERVFFSHLGSTFGGIIIRSGFNDIRHVNAIT
NKLETYLQEQSFNKVYLKNTSRIFCKEDTSLLEYFLFKNNYMFYDELSMFLELSKYKK
DILANFRYSKRRYFKYSLKNNLTFKRLYSDEDIVCFFNLLSNCLDSKGAKVIHSVEEL
LEFKNNRLKDIVEFYAVYIDDIMICGSMVFNFQERVYHTQYLASNSTYNKYYPMIFLY
YNLIKDALERNFKYLSFGISTLNRGKYLDEGLATFKEGFGSSAICNRTYYKNINK"
misc_feature 315462..315857
/locus_tag="CDBI1_01295"
/note="Acetyltransferase (GNAT) domain; Region:
Acetyltransf_6; pfam13480"
/db_xref="CDD:205658"
gene 316060..317292
/locus_tag="CDBI1_01300"
/db_xref="GeneID:12216086"
CDS 316060..317292
/locus_tag="CDBI1_01300"
/note="COG0439 Biotin carboxylase"
/codon_start=1
/transl_table=11
/product="carbamoyl-phosphate-synthetase"
/protein_id="YP_006197428.1"
/db_xref="GI:384359576"
/db_xref="GeneID:12216086"
/translation="MKRLMILGSIKYFENIVMSAKKEGIYTIVCDNRIDTPAKKICDE
AIDVDVFDFDKIKSIAIDKKIDGILTGFTDSLMKPYVYIANELNLPCVISCNQLESVT
NKAIMKKYFKNNAIPTTDYCIIESLKDLEKIQGLNFPLVIKPVDGYGSRGVYFVSNIE
ELIEKFEYSKEASQDGQVIIEEFYESEEIQGLAWVHNGESHVFYIGDRELVNIHTGRA
GKPDRLLYPSKYCFQYEEEIKSIYQNITQAFDIKNGPLYVQMLVGAYGIKVSEVMPRL
PGGCDYMAISQITDLDIGSLFANFSVNNEVNFDEIKKYNMHLSKCVYALPIYIRPGTI
KKINNIDKIENLDYVTQFLLLVKEGDTIGLYEDERQDCGRVYGIANNIFDANIKKKCI
HEMIEIFDENNENMIENF"
misc_feature 316360..316899
/locus_tag="CDBI1_01300"
/note="ATP-grasp domain; Region: ATP-grasp_4; pfam13535"
/db_xref="CDD:205713"
gene 317312..318256
/locus_tag="CDBI1_01305"
/db_xref="GeneID:12216087"
CDS 317312..318256
/locus_tag="CDBI1_01305"
/note="'COG2423 Predicted ornithine cyclodeaminase,
mu-crystallin homolog'"
/codon_start=1
/transl_table=11
/product="ornithine cyclodeaminase"
/protein_id="YP_006197429.1"
/db_xref="GI:384359577"
/db_xref="GeneID:12216087"
/translation="MKLITHEQIMSLNISQKQGYEWIKESFLTKKDCQLPPKISMVEE
GHVFYNVMPSLNHNHMIGGIKMVTRLPGRNPSLNSDIFLYNMKDAKLKAILDGNYITA
FRTAAVAGLAIDTFAKKDFNTISIMGLGVTASAIMNMLSYTLKDKNINIKLLKYKDQA
ESFIKKYEKNEQFSFEICDTHEELIVDSDVVISTVTYTDEYLSEFKWFKKGALLLPVH
VMGFGNVDYLFDKVYLDDYNHLKHLENIDRYKYSCEFYNVLSKQAKGRENDDERIISY
NIGLSIHDILFANKIYELCETLNCEEIELKEPKEKYWI"
misc_feature 317312..318190
/locus_tag="CDBI1_01305"
/note="Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism]; Region:
COG2423"
/db_xref="CDD:32552"
misc_feature <317585..318190
/locus_tag="CDBI1_01305"
/note="Rossmann-fold NAD(P)(+)-binding proteins; Region:
NADB_Rossmann; cl09931"
/db_xref="CDD:214164"
gene 318350..318757
/locus_tag="CDBI1_01310"
/db_xref="GeneID:12216088"
CDS 318350..318757
/locus_tag="CDBI1_01310"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197430.1"
/db_xref="GI:384359578"
/db_xref="GeneID:12216088"
/translation="MDKYNLIKFLSIGNEYIGNLVALESNKAIPFDIKRVYYIYDVPN
NVKRGFHAHKNLEQVLVCLNGSVKIKCYDGVKESIFNLHKNDVGLYIGTGVWHEMFDF
DEKTVLISIASEHYNEEDYIRDYKEFLKYLNNM"
misc_feature 318353..318748
/locus_tag="CDBI1_01310"
/note="WxcM-like, C-terminal; Region: FdtA; pfam05523"
/db_xref="CDD:203266"
gene 318844..319935
/locus_tag="CDBI1_01315"
/db_xref="GeneID:12216089"
CDS 318844..319935
/locus_tag="CDBI1_01315"
/note="COG0399 Predicted pyridoxal phosphate-dependent
enzyme apparently involved in regulation of cell wall
biogenesis"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197431.1"
/db_xref="GI:384359579"
/db_xref="GeneID:12216089"
/translation="MLVKFNNLLKQFQTHKEEYEQKIKDVMESGYYILGNEVRHFEEE
FASYVGSKYCVGLASGLDALIIAFRALGISEGDEVIVQSNTYIASVMGISINGATPVF
VEPNEYYNIDSSKIEEKINSKTKAILVVHLYGQASKMKDIQELCDKYNLYLIEDCAQS
HGAKYDGKMTGTFGDIGCFSFYPSKNLGAFGDAGAIVTSNEEIADKVKILRNYGSEKR
YYNKFVGYNSRLDEIQAGLLRVKLKYLNEIEIEKSKIVDRYLNEINNPKVILPKIENN
CTHVWHLFVLQVEKRDTFMEYLKKNGIESIIHYPIPPHLSEAYAYLGYKKGSFNIAEN
YSDKVVSIPLFVGMEDEEVSYIIKIINEY"
misc_feature 318892..319926
/locus_tag="CDBI1_01315"
/note="DegT/DnrJ/EryC1/StrS aminotransferase family;
Region: DegT_DnrJ_EryC1; pfam01041"
/db_xref="CDD:201569"
misc_feature 318898..319926
/locus_tag="CDBI1_01315"
/note="3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The members of this CD are involved in various
biosynthetic pathways for secondary...; Region: AHBA_syn;
cd00616"
/db_xref="CDD:99740"
misc_feature order(319021..319026,319309..319311,319318..319320,
319381..319383,319393..319398,319765..319767)
/locus_tag="CDBI1_01315"
/note="inhibitor-cofactor binding pocket; inhibition site"
/db_xref="CDD:99740"
misc_feature order(319021..319026,319096..319098,319309..319311,
319318..319320,319381..319383,319396..319398)
/locus_tag="CDBI1_01315"
/note="pyridoxal 5'-phosphate binding site [chemical
binding]; other site"
/db_xref="CDD:99740"
misc_feature 319396..319398
/locus_tag="CDBI1_01315"
/note="catalytic residue [active]"
/db_xref="CDD:99740"
gene 320741..321058
/locus_tag="CDBI1_01320"
/db_xref="GeneID:12216090"
CDS 320741..321058
/locus_tag="CDBI1_01320"
/note="COG1815 Flagellar basal body protein"
/codon_start=1
/transl_table=11
/product="flagellar basal-body rod protein"
/protein_id="YP_006197432.1"
/db_xref="GI:384359580"
/db_xref="GeneID:12216090"
/translation="MNTYDIIKMGLDATNLRSQTIANNIANINTEGYKRHYVTFEETL
NDAMPKIEEKTDNSKGLRVDGNNVDIEEEKVNQAMATLQYNALISFANGKIAMTKSII
SGR"
misc_feature 320747..321049
/locus_tag="CDBI1_01320"
/note="flagellar basal body rod protein FlgB; Provisional;
Region: flgB; PRK12623"
/db_xref="CDD:183630"
gene 321066..321470
/locus_tag="CDBI1_01325"
/db_xref="GeneID:12216091"
CDS 321066..321470
/locus_tag="CDBI1_01325"
/note="COG1558 Flagellar basal body rod protein"
/codon_start=1
/transl_table=11
/product="flagellar basal body rod protein FlgC"
/protein_id="YP_006197433.1"
/db_xref="GI:384359581"
/db_xref="GeneID:12216091"
/translation="MSVFSGMRISASGLTAESLKMDIISSNVANINATRGPNGEAYRR
KVVSFEENYDNKLGMLGVKVTSVEDDKSPLKEVYDPSHPDAKPNGYVEYPNVNILVEM
TDLITASRAYDSNVDTLNAQKSMISKALEIGK"
misc_feature 321066..321467
/locus_tag="CDBI1_01325"
/note="flagellar basal body rod protein FlgC; Reviewed;
Region: flgC; PRK05681"
/db_xref="CDD:180197"
misc_feature 321084..321170
/locus_tag="CDBI1_01325"
/note="Flagella basal body rod protein; Region:
Flg_bb_rod; pfam00460"
/db_xref="CDD:109515"
misc_feature <321330..321461
/locus_tag="CDBI1_01325"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene 321480..321797
/gene="fliE"
/locus_tag="CDBI1_01330"
/db_xref="GeneID:12216092"
CDS 321480..321797
/gene="fliE"
/locus_tag="CDBI1_01330"
/note="COG1677 Flagellar hook-basal body protein"
/codon_start=1
/transl_table=11
/product="flagellar hook-basal body protein FliE"
/protein_id="YP_006197434.1"
/db_xref="GI:384359582"
/db_xref="GeneID:12216092"
/translation="MPITQINNLMQGAKLDNLIGETKPLTLNNKEEKKNFEDVIIDTI
DKVNFQQVTADDMKEKFIKGEDVSMHEVMLIGQEAQLSMQYLIEVRNKIHDAYQEMNK
VQI"
misc_feature 321489..321794
/gene="fliE"
/locus_tag="CDBI1_01330"
/note="flagellar hook-basal body protein FliE;
Provisional; Region: fliE; PRK12728"
/db_xref="CDD:183706"
gene 321822..323372
/gene="fliF"
/locus_tag="CDBI1_01335"
/db_xref="GeneID:12216093"
CDS 321822..323372
/gene="fliF"
/locus_tag="CDBI1_01335"
/note="COG1766 Flagellar biosynthesis/type III secretory
pathway lipoprotein"
/codon_start=1
/transl_table=11
/product="flagellar MS-ring protein"
/protein_id="YP_006197435.1"
/db_xref="GI:384359583"
/db_xref="GeneID:12216093"
/translation="MIASFKNKIKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVF
TAISASKNKYAVLFSELDVQDAADISAELESKKIDTKVKGSTIYVPRTEVDKLRLELA
PSLTGGSKGFALMDDSSSIGLTDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFG
ESSVFEKEAIPGSAAVYLMLKPGTTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMN
LLSEGILEDEDVDENNQPTNSLINVDKNKASEQALNKQLEKSILEMLEPIFGKGKVKA
TVNADLSFDTAEKTEIKIDPDKVAIKETRSKNSSKSATNNVQGVDANMNNQGNNNGTN
TEDSLDESFEYETGKIETHTIVAPGELNRLTASVAIDGKIAKGVQADVEDIVNNAIGM
DGARGDTLSVVSMVFDPEGKAEAKQELEEIKKEGFKKNIIKAVIGVVAVVAIGAIGYL
IYKKRSEREDMDYEDEDYISKSDSVDRKDNPLLGDDPELTLEEAVKMYAEEKPDQVTE
IIKTWLNE"
misc_feature 321837..323369
/gene="fliF"
/locus_tag="CDBI1_01335"
/note="flagellar MS-ring protein; Reviewed; Region: fliF;
PRK06007"
/db_xref="CDD:180348"
misc_feature 321906..322487
/gene="fliF"
/locus_tag="CDBI1_01335"
/note="Secretory protein of YscJ/FliF family; Region:
YscJ_FliF; cl01907"
/db_xref="CDD:199376"
misc_feature 322614..323042
/gene="fliF"
/locus_tag="CDBI1_01335"
/note="Flagellar M-ring protein C-terminal; Region:
YscJ_FliF_C; pfam08345"
/db_xref="CDD:192009"
gene 323385..324455
/locus_tag="CDBI1_01340"
/db_xref="GeneID:12216094"
CDS 323385..324455
/locus_tag="CDBI1_01340"
/note="COG1536 Flagellar motor switch protein"
/codon_start=1
/transl_table=11
/product="flagellar motor switch protein"
/protein_id="YP_006197436.1"
/db_xref="GI:384359584"
/db_xref="GeneID:12216094"
/translation="MSTEITNVNAFDLSDINESDKKEKIEGEGLKKAAVLLMTLGPNV
SSDIIKSLPDKQVQKIGLEIANISSIASKERREILKEFVEINRAKDYVIEGGLEYARE
LLSNALGNAKANKLLEGISINTSTKPFKHIIKLDVKKILEILRDESAQTIAVLLAHME
PENGAEVLSYLDFDLQNEVAMRISSMGSISPEVIKVIESSLEDKLHSISGDDFKDYGG
VSTLVQILINSDRKTEKNILGTIEEQDPALAAQIKSHIFVFEDIVKLDDISIQKVLKE
VTMKDLVYALKGVDDEISDAIYRNQSSRAADALKEEMEMVGVIKVTQVEAAQQKIANI
VRKLEREGAITIVRNFGGDFVE"
misc_feature 323481..324422
/locus_tag="CDBI1_01340"
/note="flagellar motor switch protein G; Validated;
Region: fliG; PRK05686"
/db_xref="CDD:180201"
misc_feature 324096..324422
/locus_tag="CDBI1_01340"
/note="FliG C-terminal domain; Region: FliG_C; pfam01706"
/db_xref="CDD:190075"
gene 324448..325179
/locus_tag="CDBI1_01345"
/db_xref="GeneID:12216095"
CDS 324448..325179
/locus_tag="CDBI1_01345"
/note="COG1317 Flagellar biosynthesis/type III secretory
pathway protein"
/codon_start=1
/transl_table=11
/product="flagellar assembly protein"
/protein_id="YP_006197437.1"
/db_xref="GI:384359585"
/db_xref="GeneID:12216095"
/translation="MNNKIIKSKKASYKGVLDLTIIDKVRVGESNVNKENDCRFRDEV
IKEAIESAEIKKNEILEEAKMNAQNIEKQAYEKGYSQGQKNGYEDGYKESYDEYTQKA
KDEADFIKNQADLILLQANEKMTEYIKEKNKEIVRLAINMASSVLKKHFEDEESMSDL
LKQIIQDYEGSSSFIVRCNSFYKDNIEKEFELFKEETSLKSSVFVIADDSIDKGNAII
QKENGRIIVGIDCAMEKLKEELLGE"
misc_feature 324556..325176
/locus_tag="CDBI1_01345"
/note="Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion]; Region: FliH; COG1317"
/db_xref="CDD:31508"
gene 325183..326502
/locus_tag="CDBI1_01350"
/db_xref="GeneID:12216096"
CDS 325183..326502
/locus_tag="CDBI1_01350"
/note="COG1157 Flagellar biosynthesis/type III secretory
pathway ATPase"
/codon_start=1
/transl_table=11
/product="flagellum-specific ATP synthase"
/protein_id="YP_006197438.1"
/db_xref="GI:384359586"
/db_xref="GeneID:12216096"
/translation="MYKTDISIDFDKINKKIENLELTISEGRVKKIIGLTVEVEGIKA
FVGELCVIYNQVNKPVNCEVVGFKDKEVILMALGELTLIAPGCKVISKGIPLSVMCSD
NLLGKVLDGLGNPIDNSDAVLGDRYNLNNEPPDPMKRKKIRNIMETGVRAIDAFTTCG
EGQRIGIFAGSGVGKSTTLGMIARNAKADVNVIALIGERGREVLDFIDKDLGEEGMKK
SVVVCATSDKAPLVRLKGALTATAIAEYFRDQGKKVILMMDSVTRFAMAQREVGIAIG
EPPAQKGYTPSVFAILPKLMERTGTSDKGSITAFYTVLVDGDDFNEPIADTTRGILDG
HIVLSRDLANKNHYPSIDVLNSLSRLMNEIASKEDIKIASFARDMLAEYREAEDLINI
GAYASGTNKKIDEAIYYHEHIINFLKQGINEKSSFNETISSLRRIFE"
misc_feature 325261..326496
/locus_tag="CDBI1_01350"
/note="flagellar protein export ATPase FliI; Region:
FliI_clade2; TIGR03497"
/db_xref="CDD:211826"
misc_feature 325267..325461
/locus_tag="CDBI1_01350"
/note="ATP synthase alpha/beta family, beta-barrel domain;
Region: ATP-synt_ab_N; pfam02874"
/db_xref="CDD:145823"
misc_feature 325465..326439
/locus_tag="CDBI1_01350"
/note="Flagellum-specific ATPase/type III secretory
pathway virulence-related protein. This group of ATPases
are responsible for the export of flagellum and
virulence-related proteins. The bacterial flagellar motor
is similar to the F0F1-ATPase, in that they...; Region:
ATPase_flagellum-secretory_path_III; cd01136"
/db_xref="CDD:30002"
misc_feature 325690..325710
/locus_tag="CDBI1_01350"
/note="Walker A motif/ATP binding site; other site"
/db_xref="CDD:30002"
misc_feature 325945..325959
/locus_tag="CDBI1_01350"
/note="Walker B motif; other site"
/db_xref="CDD:30002"
gene 326540..326980
/locus_tag="CDBI1_01355"
/db_xref="GeneID:12216097"
CDS 326540..326980
/locus_tag="CDBI1_01355"
/codon_start=1
/transl_table=11
/product="flagellar protein FliJ"
/protein_id="YP_006197439.1"
/db_xref="GI:384359587"
/db_xref="GeneID:12216097"
/translation="MDKNFKFRLQKVLDLKIKDEEEIKMEFAKIQQKKIDIESNLENL
ESNYSKYSISKNNDSVQNQKITINYLLALNNSIMDLSEELDKSTNELEKARKQLISKQ
IERKSLEKLKEKKYGQYYKEEQLKEQSTNDEFASMSYLRNRQVL"
gene 327008..328213
/locus_tag="CDBI1_01360"
/db_xref="GeneID:12216098"
CDS 327008..328213
/locus_tag="CDBI1_01360"
/note="COG3144 Flagellar hook-length control protein"
/codon_start=1
/transl_table=11
/product="flagellar hook-length control protein"
/protein_id="YP_006197440.1"
/db_xref="GI:384359588"
/db_xref="GeneID:12216098"
/translation="MKIQADSYNIIKDIGNRKSSSKNKNIKNNKFEDNLYKATDHKKV
KDRRETSKQNVSSDKRENSDNECHLDEDKSNHLEDENTYEKDCSNNNEALHQLLNLLK
DNYKKDKDINTILNNLKKLSISDELKQELKLNKNILNKIANQNLELNRASTNNPNDIE
NLDIMKLRELLENNASEDIEVISKTTENDTKSIDLYSFDSNRIDTLNSNKQKDDSSDI
LEKLAGVNGNKSGNFGQVINKSVDMNKIKNDNVNLKQIESNVMDDSIKAIKHMKTNDI
QELTIKLRPKELGDMNIQLLKDGESMRAVVTVFNKDVFDSINKNIADLKQHLELTNVN
IKDVSVQMHSDNTNTSDTFDKAFEQQNRQNNQENMSKQNTNDKRNNVVIEDEIKENII
DDDRVDLLA"
misc_feature 327803..328039
/locus_tag="CDBI1_01360"
/note="Flagellar hook-length control protein FliK; Region:
Flg_hook; pfam02120"
/db_xref="CDD:202116"
gene 328231..328839
/locus_tag="CDBI1_01365"
/db_xref="GeneID:12216099"
CDS 328231..328839
/locus_tag="CDBI1_01365"
/note="COG1843 Flagellar hook capping protein"
/codon_start=1
/transl_table=11
/product="basal-body rod modification protein"
/protein_id="YP_006197441.1"
/db_xref="GI:384359589"
/db_xref="GeneID:12216099"
/translation="MYGIATALAGTQVNYRSNNLSQLERNINDIANKQVRSKGNQTVT
DNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMSAMND
KLDILLALSNSTLINSALSMATSLIGKEVEVSGEEEEDENIVGVVKSTYIKDGEVHLE
LEVDGSDKTVGVKYEKLLKIGEVDANSGEENDSSEQESPEEV"
misc_feature <328384..328551
/locus_tag="CDBI1_01365"
/note="Flagellar hook capping protein - N-terminal region;
Region: FlgD; pfam03963"
/db_xref="CDD:202834"
gene 328866..329849
/locus_tag="CDBI1_01370"
/db_xref="GeneID:12216100"
CDS 328866..329849
/locus_tag="CDBI1_01370"
/note="COG4786 Flagellar basal body rod protein"
/codon_start=1
/transl_table=11
/product="flagellar hook protein"
/protein_id="YP_006197442.1"
/db_xref="GI:384359590"
/db_xref="GeneID:12216100"
/translation="MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDS
FYQTVLYASAPTAALGGTNLGQVGVGSKISSINKDMTQGNVQPTNRPSDLMIDGDGYL
PVVRQGTVMYTRDGSFNLDTGFKAADGALKNIKGGRLVNGDGYMLQGVIYDGEYKADT
GEFIKKGDAKGKEPIVIPLQSISPKDGTVQNVLEYNISKDGTVEFLLSDGQRTQFVYD
IPDGAKVGDTPAGIDKLKGTIQKVQTYAFQNPAGLDAEGGNLFKPSANSGDPQIAGAT
GNIIQGAIEASNVDIAEEFTEMIIASRSFQANSKIISTSDEILQEIINLKR"
misc_feature 328866..329846
/locus_tag="CDBI1_01370"
/note="flagellar basal body rod protein FlgG; Provisional;
Region: flgG; PRK12636"
/db_xref="CDD:183640"
misc_feature 328878..328970
/locus_tag="CDBI1_01370"
/note="Flagella basal body rod protein; Region:
Flg_bb_rod; pfam00460"
/db_xref="CDD:109515"
misc_feature 329616..329840
/locus_tag="CDBI1_01370"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene 329862..330065
/locus_tag="CDBI1_01375"
/db_xref="GeneID:12216101"
CDS 329862..330065
/locus_tag="CDBI1_01375"
/note="'COG1582 Uncharacterized protein, possibly involved
in motility'"
/codon_start=1
/transl_table=11
/product="flagellar protein"
/protein_id="YP_006197443.1"
/db_xref="GI:384359591"
/db_xref="GeneID:12216101"
/translation="MIRVTDLNGRRYILNSDLIVRIDSVPESRILLTTGEKNLVKESV
DEIVDKVIKYKRKVNVGYIRSEK"
misc_feature 329862..330041
/locus_tag="CDBI1_01375"
/note="Flagellar protein (FlbD); Region: FlbD; pfam06289"
/db_xref="CDD:148101"
gene 330065..330883
/locus_tag="CDBI1_01380"
/db_xref="GeneID:12216102"
CDS 330065..330883
/locus_tag="CDBI1_01380"
/note="COG1291 Flagellar motor component"
/codon_start=1
/transl_table=11
/product="chemotaxis protein"
/protein_id="YP_006197444.1"
/db_xref="GI:384359592"
/db_xref="GeneID:12216102"
/translation="MKKTDSLTFIGLILSTVLVLFGAVKGSSSGLKSFFDFASILITV
FGSFGALMITFTIDDIKLIKDALQYSFKTMNISKLDLLNQFKTLSKKARREGLLSIES
DVMKIQDPFMKKGLELCIDGLEVNEIRSILELEIDSVEETNNRYSKLFKTWGTFAPAF
GMLGTLIGLIQMLSDLTSPDLIASGMGKALITTFYGSLLANIALNPIAYNIDEKTEKE
IYVKEMMLEGIISIQSGESSIVVEERLATYLSNNEKLEIMKSNKNTERAMSNGA"
misc_feature 330065..330826
/locus_tag="CDBI1_01380"
/note="flagellar motor protein MotP; Reviewed; Region:
PRK06926"
/db_xref="CDD:180755"
misc_feature 330077..330811
/locus_tag="CDBI1_01380"
/note="MotA/TolQ/ExbB proton channel family; Region:
MotA_ExbB; cl00568"
/db_xref="CDD:214083"
gene 330873..331568
/locus_tag="CDBI1_01385"
/db_xref="GeneID:12216103"
CDS 330873..331568
/locus_tag="CDBI1_01385"
/note="COG1360 Flagellar motor protein"
/codon_start=1
/transl_table=11
/product="chemotaxis protein"
/protein_id="YP_006197445.1"
/db_xref="GI:384359593"
/db_xref="GeneID:12216103"
/translation="MARKKNKKKDEINPDAWLATYADTITLILTFFVLLYATSVVDME
KFKNIADALKGQFSGISMFSTGSSTSEKSPIESVLVDKNDKSNLEQDLKDKVNNSNLQ
NSVTVKDDSRGILLELDDSILFDSGISELKADSKATLNKVYDMIKMMKNKIVIEGHTD
NVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDPRLFSATGCGEYQPLVSNETAKGR
AENRRVNILITID"
misc_feature 330873..331556
/locus_tag="CDBI1_01385"
/note="flagellar motor protein MotB; Reviewed; Region:
motB; PRK07734"
/db_xref="CDD:181095"
misc_feature 330873..331046
/locus_tag="CDBI1_01385"
/note="Membrane MotB of proton-channel complex MotA/MotB;
Region: MotB_plug; pfam13677"
/db_xref="CDD:205853"
misc_feature 331233..331556
/locus_tag="CDBI1_01385"
/note="Peptidoglycan binding domains similar to the
C-terminal domain of outer-membrane protein OmpA; Region:
OmpA_C-like; cd07185"
/db_xref="CDD:143586"
misc_feature order(331248..331253,331347..331352,331371..331373,
331383..331388,331395..331397,331524..331526,
331536..331538)
/locus_tag="CDBI1_01385"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:143586"
gene 331580..332023
/locus_tag="CDBI1_01390"
/db_xref="GeneID:12216104"
CDS 331580..332023
/locus_tag="CDBI1_01390"
/note="COG1580 Flagellar basal body-associated protein"
/codon_start=1
/transl_table=11
/product="flagellar basal body-associated protein"
/protein_id="YP_006197446.1"
/db_xref="GI:384359594"
/db_xref="GeneID:12216104"
/translation="MFKNKKIIIIILILIIFSAGAGFFILGEGGNKQIDKIAGLFIPT
GKGKDEVKTENLDLEEMVLKLADEGVRYLKVSITVSYDSSYKDIEKNTPLIRDNIINC
FMAKRADDFTADNLKNIKEEIKNTLNIQLGENVIQNIYFTNIVVQ"
misc_feature 331745..332020
/locus_tag="CDBI1_01390"
/note="Flagellar basal body-associated protein FliL;
Region: FliL; pfam03748"
/db_xref="CDD:202757"
gene 332038..332412
/locus_tag="CDBI1_01395"
/db_xref="GeneID:12216105"
CDS 332038..332412
/locus_tag="CDBI1_01395"
/codon_start=1
/transl_table=11
/product="flagellar protein"
/protein_id="YP_006197447.1"
/db_xref="GI:384359595"
/db_xref="GeneID:12216105"
/translation="MILYLLKILICIPIILILIVLSLKISQGTLLKKYNDKYIKILDI
VNISKNNSIIILKIGEEGCIMASSSSSMNKIKDLTKEEILRIENDIKERNFKIQDFKM
ERIKKKYDFSRYIGKFTKKEDK"
gene 332413..333078
/gene="fliP"
/locus_tag="CDBI1_01400"
/db_xref="GeneID:12216106"
CDS 332413..333078
/gene="fliP"
/locus_tag="CDBI1_01400"
/note="'COG1338 Flagellar biosynthesis pathway, component
FliP'"
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis protein FliP"
/protein_id="YP_006197448.1"
/db_xref="GI:384359596"
/db_xref="GeneID:12216106"
/translation="MELLSKLPLADVPYTSSMQLFLFLTALMFLPFVMFMMTSFVRIV
ISLSFLKSALGAQQAIPSQILVGLAIVLTIFIMRPVLNEINEKALQPYMKEEVTMEEA
MKEAEGPIKEFLLKQTRQTDLDLFVEQAGLKEKKLTRENIPLSVVVPAFAISELKTAF
QIGFLIYIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWNLIVKTLIL
GFG"
misc_feature 332452..333075
/gene="fliP"
/locus_tag="CDBI1_01400"
/note="flagellar biosynthesis protein FliP; Reviewed;
Region: fliP; PRK05699"
/db_xref="CDD:180209"
gene 333091..333360
/locus_tag="CDBI1_01405"
/db_xref="GeneID:12216107"
CDS 333091..333360
/locus_tag="CDBI1_01405"
/note="'COG1987 Flagellar biosynthesis pathway, component
FliQ'"
/codon_start=1
/transl_table=11
/product="flagellar export protein"
/protein_id="YP_006197449.1"
/db_xref="GI:384359597"
/db_xref="GeneID:12216107"
/translation="MSEFMIMSVLKNGMFTGAMIAAPVLIVSLVVGLLISVFQATTQI
QEQTLTFVPKLIAILLVVAIGGSWMLHTLISFTSEIFNMMSLITK"
misc_feature 333103..333327
/locus_tag="CDBI1_01405"
/note="Bacterial export proteins, family 3; Region:
Bac_export_3; pfam01313"
/db_xref="CDD:201723"
gene 333372..335186
/locus_tag="CDBI1_01410"
/db_xref="GeneID:12216108"
CDS 333372..335186
/locus_tag="CDBI1_01410"
/note="'COG1684 Flagellar biosynthesis pathway, component
FliR'"
/codon_start=1
/transl_table=11
/product="bifunctional flagellar biosynthesis protein
FliR/FlhB"
/protein_id="YP_006197450.1"
/db_xref="GI:384359598"
/db_xref="GeneID:12216108"
/translation="MIFVFIRIVAFFGTLRILFPAGTPALFKSLFAIIISILISSTMQ
IEYATNIDNIVLFTLYGINETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSMINMFD
PNSMTQTTLIDNLMNWTARMIFFSMDGHHVLIRGIRYSFELIPIGKSFVDNNIDYIIN
IFVQCFLTGFKIAIPIVLCLLMADFILGLISRSVPQLNVMIIGMPLKILVGIALFIIS
IPLIVNQISHLLSQIPKMYEGTFALAPMFFMGSTDKTEEATPKKKGEQRKKGNIAKSK
ELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYFLSLDFYMNINYSSIEKLVIAGLMDF
FKIFLPIAIPFLVLGIVANLFQVGILFTGETLKPNLSKLNPVSGFKNMFSMRSLSTLI
KDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLMYTVKDLVYSILSKICVAMIVIA
VADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAKIKQKQRQISSQRTMQAVPSA
TVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIREIAKGNDIPIIENKPIARL
LYKQVEIDQEIPEDMYQAFAEILVAVYKIKNRYKVLKR"
misc_feature 333372..335165
/locus_tag="CDBI1_01410"
/note="bifunctional flagellar biosynthesis protein
FliR/FlhB; Provisional; Region: PRK12772"
/db_xref="CDD:183736"
misc_feature 333372..334070
/locus_tag="CDBI1_01410"
/note="flagellar biosynthesis protein FliR; Reviewed;
Region: fliR; PRK05701"
/db_xref="CDD:180211"
misc_feature 334926..335171
/locus_tag="CDBI1_01410"
/note="Uncharacterized homolog of the cytoplasmic domain
of flagellar protein FhlB [Function unknown]; Region:
COG2257"
/db_xref="CDD:32438"
gene 335195..337270
/gene="flhA"
/locus_tag="CDBI1_01415"
/db_xref="GeneID:12216109"
CDS 335195..337270
/gene="flhA"
/locus_tag="CDBI1_01415"
/note="'COG1298 Flagellar biosynthesis pathway, component
FlhA'"
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis protein FlhA"
/protein_id="YP_006197451.1"
/db_xref="GI:384359599"
/db_xref="GeneID:12216109"
/translation="MNKFNLKENMDVIVAFGVVGIVLMMIVPLPTFILDILLAINISL
SVLILLMTLFTTNVLDLSIFPTVLLVTTLFRLGLNLSSTRLILTQGYAGEVIEAFGSF
VVGGNYVVGIIIFLIILIVQFVVITNGSGRVSEVTARFTLDAMPGKQMSIDADLNAGV
IDDKTARKRRKELQQEADFYGSMDGANKFVKGDAIAGLIVTAINIIGGIVIGAVMLNM
TLMGAAQTYVRLTIGDGLVSQIPALLISTSAGIIVTRASTDENFGGLVSKQLTAIPKA
VMMTGCVLIVLGMMPGLPKPAFFSLGIGAIAAGYFLGREKKDTLEDLEFEKPDMVNPD
KNEVEDVTNLINVESIEVEIGYGLISLADESAGGDLLQRIASIRRQCAIDMGIVVQPI
RIRDNLQLNPNQYNIKIKGNVVGGYEIMPNMVLCMDPMNQGFSIFGIKTIEPTFGIEA
LWIESDKVEDAEIKGYTVVDSSTILITHLLDIIKSNAHELLGRQEVKTIIDAARENYS
AVVDELIPDLMTLGEIQKVLKNLLREKVNIKDRVTILETLADQSRNTKDIELLTEYVR
IALARSICNNLVDDDKTIVVATLSPETEELVSNNLQRSVNGTYPAVDPENTNKIFESI
QEVMNNVYFNHNIPVIVVSPKIRAPFRKLVEIVYPNLTVLSLNEIPNDIKIKAEGVVS
IYDDEKVYS"
misc_feature 335195..337243
/gene="flhA"
/locus_tag="CDBI1_01415"
/note="flagellar biosynthesis protein FlhA; Validated;
Region: flhA; PRK06012"
/db_xref="CDD:180350"
misc_feature 335252..337219
/gene="flhA"
/locus_tag="CDBI1_01415"
/note="FHIPEP family; Region: FHIPEP; pfam00771"
/db_xref="CDD:201434"
gene 337245..338261
/gene="flhF"
/locus_tag="CDBI1_01420"
/db_xref="GeneID:12216110"
CDS 337245..338261
/gene="flhF"
/locus_tag="CDBI1_01420"
/note="COG1419 Flagellar GTP-binding protein"
/codon_start=1
/transl_table=11
/product="flagellar biosynthesis regulator FlhF"
/protein_id="YP_006197452.1"
/db_xref="GI:384359600"
/db_xref="GeneID:12216110"
/translation="MMTKKYTANTIQDAMNLAKMELGDNITLIDKKEVRKSGIQGIFS
KKDIELTIGWEKRENVEQKDLKREIEQLKLIINNMGFDNKNDNDIDKICKNLLSLELN
EEIVESIRIDLQEMKFNGIDTSKNLVEILKKKIKIENQAINGKIALVGPPGVGKTTTI
AKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPFKGVISPDEMELALDEM
KDCDVVLIDTTGRGYKNSMQILEIKNLIDKAETDNIHLVVNCTTRESDTKAIIDSYRN
VNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTGQNVPDDIIKPNEDKIIRLLLG
VESI"
misc_feature 337245..337934
/gene="flhF"
/locus_tag="CDBI1_01420"
/note="flagellar biosynthetic protein FlhF; Region: FlhF;
TIGR03499"
/db_xref="CDD:213818"
misc_feature 337674..338246
/gene="flhF"
/locus_tag="CDBI1_01420"
/note="SRP54-type protein, GTPase domain; Region: SRP54;
smart00962"
/db_xref="CDD:198030"
misc_feature 337680..338174
/gene="flhF"
/locus_tag="CDBI1_01420"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:214148"
gene 338258..339136
/locus_tag="CDBI1_01425"
/db_xref="GeneID:12216111"
CDS 338258..339136
/locus_tag="CDBI1_01425"
/note="COG0455 ATPases involved in chromosome
partitioning"
/codon_start=1
/transl_table=11
/product="flagellar number regulator"
/protein_id="YP_006197453.1"
/db_xref="GI:384359601"
/db_xref="GeneID:12216111"
/translation="MIDQAQILRKMAMEKRGLDEFIVENENVPKIITIASGKGGVGKS
NLATNLSICLTKLNKKVLILDADIGMSNIDIIMGVNVKGTIIDVINGEKNIEDIISQT
KYGVNIISGGSALNHIEDFTEAQRNKFIHSIEQIHDVDFIIIDTGAGMSKSLLSFIYC
STEFFLITTPEPTSLTDAYSLLKAISNFGIKRSANIIINRVIDLEEAKSTYKRIKMVV
DKFLNLNLELYGYIIDDKKVSLCVKKQIPFILEYPTSIASKCIIAIAKRMVSQSREDI
VDNKSFLRKMFSIFKS"
misc_feature 338345..339130
/locus_tag="CDBI1_01425"
/note="Septum formation inhibitor-activating ATPase [Cell
division and chromosome partitioning]; Region: MinD;
COG2894"
/db_xref="CDD:32719"
misc_feature 338348..>338482
/locus_tag="CDBI1_01425"
/note="FleN is a member of the Fer4_NifH superfamily. It
shares the common function as an ATPase, with the
ATP-binding domain at the N-terminus. In Pseudomonas
aeruginosa, FleN gene is involved in regulating the number
of flagella and chemotactic motility by...; Region:
FleN-like; cd02038"
/db_xref="CDD:73301"
misc_feature 338366..338389
/locus_tag="CDBI1_01425"
/note="P-loop; other site"
/db_xref="CDD:73301"
misc_feature <338669..338953
/locus_tag="CDBI1_01425"
/note="FleN is a member of the Fer4_NifH superfamily. It
shares the common function as an ATPase, with the
ATP-binding domain at the N-terminus. In Pseudomonas
aeruginosa, FleN gene is involved in regulating the number
of flagella and chemotactic motility by...; Region:
FleN-like; cd02038"
/db_xref="CDD:73301"
gene 339150..339851
/locus_tag="CDBI1_01430"
/db_xref="GeneID:12216112"
CDS 339150..339851
/locus_tag="CDBI1_01430"
/note="COG1191 DNA-directed RNA polymerase specialized
sigma subunit"
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor for flagellar
operon"
/protein_id="YP_006197454.1"
/db_xref="GI:384359602"
/db_xref="GeneID:12216112"
/translation="MNREELIKENMPLVKSIARKFFIPGKGFEYQDLVNSGVIGLIDA
INKFDAEKGAKFSSYSYIKIKSAILDEIRNQSPISKHNLTKVNKYNRVVEKLQSKLLR
EPTSYEIAKELNVSEKELHDIESNIDMLNIVSLNYVIFEDTNETVQDVISDREEEAPE
NIIEEEEKLEILSKAISNLNEREKLILSLYYYEDLNLKEIGKVLGVSESRVSQLHRKS
IRNLRNKIKELKYSI"
misc_feature 339165..339830
/locus_tag="CDBI1_01430"
/note="RNA polymerase sigma factor, FliA/WhiG family;
Region: FliA_WhiG; TIGR02479"
/db_xref="CDD:162877"
misc_feature 339165..339377
/locus_tag="CDBI1_01430"
/note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
/db_xref="CDD:146937"
misc_feature 339402..339608
/locus_tag="CDBI1_01430"
/note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
/db_xref="CDD:146934"
misc_feature 339663..339818
/locus_tag="CDBI1_01430"
/note="Sigma70, region (SR) 4 refers to the most
C-terminal of four conserved domains found in Escherichia
coli (Ec) sigma70, the main housekeeping sigma, and
related sigma-factors (SFs). A SF is a dissociable subunit
of RNA polymerase, it directs bacterial or...; Region:
Sigma70_r4; cd06171"
/db_xref="CDD:100119"
misc_feature order(339687..339689,339717..339719,339735..339740,
339768..339770,339774..339779,339783..339791,
339795..339800,339804..339806)
/locus_tag="CDBI1_01430"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:100119"
gene 339867..340289
/locus_tag="CDBI1_01435"
/db_xref="GeneID:12216113"
CDS 339867..340289
/locus_tag="CDBI1_01435"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197455.1"
/db_xref="GI:384359603"
/db_xref="GeneID:12216113"
/translation="MIQIILIVVSILIIVTIVINLHKESKNKDNRYFDKIFEQEYEAN
DRLIIAEKRRFFLDKVLAEIRSNNHIKVYENYNLIKANEERKENIFIESKKEVRQENE
LSLKVKHLISSGYDDVEICKMLDIGKGELSLIRSCYKI"
gene 340274..340459
/locus_tag="CDBI1_01440"
/db_xref="GeneID:12216114"
CDS 340274..340459
/locus_tag="CDBI1_01440"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197456.1"
/db_xref="GI:384359604"
/db_xref="GeneID:12216114"
/translation="MLQNIRILLCDKKVFLGIGIGILISTLCIMLFSNNDMSKAEIEK
KARALGMKYTSEMKVLE"
gene 340500..341273
/gene="flgG"
/locus_tag="CDBI1_01445"
/db_xref="GeneID:12216115"
CDS 340500..341273
/gene="flgG"
/locus_tag="CDBI1_01445"
/note="COG4786 Flagellar basal body rod protein"
/codon_start=1
/transl_table=11
/product="flagellar basal body rod protein FlgG"
/protein_id="YP_006197457.1"
/db_xref="GI:384359605"
/db_xref="GeneID:12216115"
/translation="MIRGLYTAVSAMITNQQKQNVVVNNLANMDTNGYKSKQLLTKSF
DELKLEGYNNYANGTKQKQIIGDISPGISMDETITNFNQGPIKTTDNKMDVAIQGKGF
FLVSDAAGNQFYTRNGNFRTDNQGDLITSEGYYVLGTNTATGAVGHINVGNQKFEVAK
DNTISLDGNAMYKFNIVDFNDYNNLKKEGDNLYSGGGAMKVNNALTIQSAIESSNVDM
VSEINNMMTISREYEANQKIIQAMDSKLAKIASEIGSVR"
misc_feature 340500..341267
/gene="flgG"
/locus_tag="CDBI1_01445"
/note="flagellar basal body rod protein FlgG; Reviewed;
Region: flgG; PRK12818"
/db_xref="CDD:183768"
misc_feature 340956..341198
/gene="flgG"
/locus_tag="CDBI1_01445"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; cl15855"
/db_xref="CDD:214255"
gene 341294..342055
/gene="flgG"
/locus_tag="CDBI1_01450"
/db_xref="GeneID:12216116"
CDS 341294..342055
/gene="flgG"
/locus_tag="CDBI1_01450"
/note="COG4786 Flagellar basal body rod protein"
/codon_start=1
/transl_table=11
/product="flagellar basal body rod protein FlgG"
/protein_id="YP_006197458.1"
/db_xref="GI:384359606"
/db_xref="GeneID:12216116"
/translation="MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDL
VDEVLNRPSYPTNGNDISTGTGAKATAPMRIYEQGALAPTDSKSNLAIDGEGFFRVIR
KDGTYAYTRNGGFNIDGLGKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELF
VDNKKIGKINLYQPIGTQNFISEGDSLFVATDAAQIKQVEKVDIVQGYRERSNVSLQE
EFVDLIATQRAFQMNSKGIKTADEMWQIANNLRAK"
misc_feature 341294..342049
/gene="flgG"
/locus_tag="CDBI1_01450"
/note="flagellar basal body rod protein FlgG; Reviewed;
Region: flgG; PRK12817"
/db_xref="CDD:183767"
misc_feature 341306..341398
/gene="flgG"
/locus_tag="CDBI1_01450"
/note="Flagella basal body rod protein; Region:
Flg_bb_rod; pfam00460"
/db_xref="CDD:109515"
misc_feature 341825..342043
/gene="flgG"
/locus_tag="CDBI1_01450"
/note="Flagellar basal body rod FlgEFG protein C-terminal;
Region: Flg_bbr_C; pfam06429"
/db_xref="CDD:203447"
gene 342078..342959
/locus_tag="CDBI1_01455"
/db_xref="GeneID:12216117"
CDS 342078..342959
/locus_tag="CDBI1_01455"
/note="COG1868 Flagellar motor switch protein"
/codon_start=1
/transl_table=11
/product="putative flagellar motor switch protein"
/protein_id="YP_006197459.1"
/db_xref="GI:384359607"
/db_xref="GeneID:12216117"
/translation="MNDMKEYDFGKPQSYSRENLTCLNFLLAEFCKKYKNYIIYELKC
NSSMIVDSIDQVNYQTFLDRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITSGG
TGVIKDNDRELTELDKKVLLHLMDDLVRNMHLFEGFENIQVLDTHTHINLPQLCSPTA
PVCVVDLKVLNDNEYIGSVSLCFPYNGLEALLESISVIEFFDNDVGDDSEEFTKKIYN
SVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENSKSYTATPGF
ISSKKGVKINDAVGKEV"
misc_feature 342096..342656
/locus_tag="CDBI1_01455"
/note="Flagellar motor switch protein FliM; Region: FliM;
pfam02154"
/db_xref="CDD:111086"
misc_feature 342729..342953
/locus_tag="CDBI1_01455"
/note="Surface presentation of antigens (SPOA); Region:
SpoA; pfam01052"
/db_xref="CDD:201573"
gene 342962..343336
/locus_tag="CDBI1_01460"
/db_xref="GeneID:12216118"
CDS 342962..343336
/locus_tag="CDBI1_01460"
/note="COG1886 Flagellar motor switch/type III secretory
pathway protein"
/codon_start=1
/transl_table=11
/product="flagellar motor switch protein"
/protein_id="YP_006197460.1"
/db_xref="GI:384359608"
/db_xref="GeneID:12216118"
/translation="MDNSNLISDEEAKMLLNDKVESEVDGDDELALDVSEVNRNNIQR
ILDLKLELSVVIGRTKMTLRDILNLHKGSLIELNTLADQDVEILIDNKVLAYGKVVVV
DLNFGVKITSIVSEEDMVKSLV"
misc_feature <343022..343300
/locus_tag="CDBI1_01460"
/note="Flagellar motor switch/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion]; Region: FliN; COG1886"
/db_xref="CDD:32070"
gene 343368..344771
/locus_tag="CDBI1_01465"
/db_xref="GeneID:12216119"
CDS 343368..344771
/locus_tag="CDBI1_01465"
/note="'COG1241 Predicted ATPase involved in replication
control, Cdc46/Mcm family'"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197461.1"
/db_xref="GI:384359609"
/db_xref="GeneID:12216119"
/translation="MVLILNLNDIKKDILKLNKKDSCSLYNESINNINNNCISTGLKF
LKQARDLNPDDVDILNLTGLVNLLKCNFDDAVESFYKSSLCEKTALCEKYINMLTSEE
FLIFFEKYNQLIRLINKGMYKEAIQGFKLITDQYCDLIEPYELLALLYDKEEEYIKFD
ECLEVLKIIDKENYLLNQENNTLDMYNSANIQTKSNVKVDDYKNEFLHKSSSNHKIND
YNNVTKEKSSSKNQKSSDSNKKKSIKKNKYLYIAIILGILLVGQSIYSSYKMNNLTDK
ISKNNETKNEESIDSNLTKKENNIEENEDMSKASNINKSNKNINKEADVKSKKNTVEN
EDDKDSDLFTEDELMSKANTLKSEKKTKSSIQLYKKVADIGENKGNTSEATYQVAILS
EKLKDYKTAEEYYKMYVENYSEKDAYFDESYYNLGMMYYNNGDLKNSKLTLKKLVNKV
PNSMYNNSKVKEILKEE"
misc_feature 344409..344609
/locus_tag="CDBI1_01465"
/note="Tetratricopeptide repeat; Region: TPR_12;
pfam13424"
/db_xref="CDD:205602"
gene 344887..346824
/locus_tag="CDBI1_01470"
/db_xref="GeneID:12216120"
CDS 344887..346824
/locus_tag="CDBI1_01470"
/note="'COG0326 Molecular chaperone, HSP90 family'"
/codon_start=1
/transl_table=11
/product="heat shock protein 90"
/protein_id="YP_006197462.1"
/db_xref="GI:384359610"
/db_xref="GeneID:12216120"
/translation="MEFEKGSISIHTENIFPIIKKWLYSDKDIFIRELISNGCDAVSK
HKRLVSLGEISENKSSDYKITVSVNKGEGTLKFIDNGIGMTEEEIKKYINQVAFSGAE
DFFNKYKDKMEESNDIIGHFGLGFYSAFMVSKKVQIDTLSYTEGATPVRWISEGGTEY
EISESDARNDRGTTITLFIDDDSKEFLDEFTVRGIINKYCSFLPVEIYLEDVERLERE
AKEAEEKAKKQKEDGKEEIVDAKVIEPLNDTNPLWLKSPKDCTDEEYKEFYRKVFNVF
DEPLFWIHLNVDYPFNLKGILYFPKLKNEFELTEGKVKLYNNQVFVADNIKEVIPEFL
LLLKGVIDCPDLPLNVSRSFLQNDRDVSKISKHIIKKVADKLKSLCKNEREEYNKFWD
DIQIFIKYGCLKDESFYEKVKECILFKTIDDEYITIQDYLEKCKDKHENKVFYVSDKE
QQSQYIKLFKEYDLSAVVLNSSIDTHFISFMEYKENGVKFNRIDADLSDVLKDKNENK
DSEENKEEIAKIEGLFKEAVGERVKNYSVEGLKNEDTPAMVLVSEQSIRMAEMQSRFA
GMDLGMNFEEEKTLVINENSPIIKKLVSLKDDEEKKDKITLICNQIADLALLSNKELK
PDELDSFVQRSNKLMSLLIEL"
misc_feature 344887..346818
/locus_tag="CDBI1_01470"
/note="heat shock protein 90; Provisional; Region:
PRK05218"
/db_xref="CDD:179965"
misc_feature 344974..>345291
/locus_tag="CDBI1_01470"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(344983..344985,344995..344997,345004..345006,
345115..345117,345121..345123,345127..345129,
345133..345138,345253..345264)
/locus_tag="CDBI1_01470"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 344995..344997
/locus_tag="CDBI1_01470"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(345127..345129,345133..345135,345253..345255,
345259..345261)
/locus_tag="CDBI1_01470"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 347212..348342
/locus_tag="CDBI1_01475"
/db_xref="GeneID:12216121"
CDS 347212..348342
/locus_tag="CDBI1_01475"
/note="'COG1454 Alcohol dehydrogenase, class IV'"
/codon_start=1
/transl_table=11
/product="1,3-propanediol dehydrogenase"
/protein_id="YP_006197463.1"
/db_xref="GI:384359611"
/db_xref="GeneID:12216121"
/translation="MNFNYNLPVNILFGRGRINDVGKEVSKYGKKVLIVTGKNSTKKT
GLLDKTIDLLKDSKIEYEVFDRVEQNPLITTIYSGVEIIKSTGCDCVLGLGGGSIMDA
AKSIAFSYKNPGDLNDYIFGIRQGEEALPIILVPTTSGTGSEGNCFAVLTNSETKDKK
SIKKNSMYAKASIIDPELMVTMPKHIIASVGFDALAHNMEAYLSNGRNPLADVQAIYG
IELISENLIKVYNDVNDLEAWEKITLASTIGGMTIGTAGTALPHGMEHPVSGLRDVMH
GKGLAALTPTIIESSWDIDIERFGNISKVLGGTCAEDCSDAIRNFLKKIDLDIKLSDL
GIEKSDIDWLTDNCMKISVANIKRHPKYFNKEQIKEMYHKSL"
misc_feature 347224..348330
/locus_tag="CDBI1_01475"
/note="Iron-containing alcohol dehydrogenases-like;
Region: Fe-ADH1; cd08185"
/db_xref="CDD:173944"
misc_feature 347233..348315
/locus_tag="CDBI1_01475"
/note="Iron-containing alcohol dehydrogenase; Region:
Fe-ADH; pfam00465"
/db_xref="CDD:201245"
misc_feature order(347320..347322,347497..347505,347512..347514,
347521..347523,347620..347625,347629..347631,
347686..347691,347743..347745,347767..347769,
347788..347790,347800..347802,347995..347997,
348007..348009,348037..348039)
/locus_tag="CDBI1_01475"
/note="putative active site [active]"
/db_xref="CDD:173944"
misc_feature order(347788..347790,347800..347802,347995..347997,
348037..348039)
/locus_tag="CDBI1_01475"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173944"
gene 348569..349591
/locus_tag="CDBI1_01480"
/db_xref="GeneID:12216122"
CDS 348569..349591
/locus_tag="CDBI1_01480"
/note="COG1533 DNA repair photolyase"
/codon_start=1
/transl_table=11
/product="spore photoproduct lyase"
/protein_id="YP_006197464.1"
/db_xref="GI:384359612"
/db_xref="GeneID:12216122"
/translation="MFNPKRIIFEKGTLDTDVGKKIYNKFRDNKDVEIINISSNRIKE
HIPGENLYEQYRSGKQTMVVGIRKSLKFQTCKPSANYQLPLVSGCMGRCEYCYLNTQL
GDKPFIRVFVNVDEILEQTKKYIEDRKPQVTIFEGAATSDPVPVEPYTNSLKKTIEFF
GREEKGRFRFVTKYSDVDSLLDAEHNNHTEIRFSINTPRIINEHEHYTASANKRIESA
VKLARAGYQIGFIIAPVFLYEGWKEEYKNLIISIKEALPKDFDKKIIFEVISHRYTTK
AKNRILEIYPDTLLPMENEDRKFKYGQFGYGKYVYDKEQLDDMKEFFLKEINGVFKNS
LIKYII"
misc_feature 348704..349588
/locus_tag="CDBI1_01480"
/note="DNA repair photolyase [DNA replication,
recombination, and repair]; Region: SplB; COG1533"
/db_xref="CDD:31722"
misc_feature 348815..349444
/locus_tag="CDBI1_01480"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(348833..348835,348839..348841,348845..348847,
348851..348859,348971..348973,348977..348982,
349061..349069,349148..349150,349265..349267,
349370..349375)
/locus_tag="CDBI1_01480"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene 349773..350684
/locus_tag="CDBI1_01485"
/db_xref="GeneID:12216123"
CDS 349773..350684
/locus_tag="CDBI1_01485"
/note="COG2207 AraC-type DNA-binding domain-containing
proteins"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_006197465.1"
/db_xref="GI:384359613"
/db_xref="GeneID:12216123"
/translation="MHAWESIQITLDLIEANLSEEISINELANKANLSPFYYQRLFKR
LVNKTVMEYIKLRRLARASEYLAEHKNRILDVALNFGFASHETFTRSFKKAYGLTPEK
YRANPVKLNHFIKPELILNYAMVDEGVPLIADDIVIEVNRKTLSNPRTFVGIEIEVPI
CQLVGGETTGIAIVEELWMKLGSQRHNIPNQIPGGNEFAALYMGNAKEGNCMYMAGVE
VESGTSVEGYNTFELPAKEYLVCGFEAENFNELVNSAVFKADKFMERWMKKHNLTTTD
FAIEMYYPTTPEAAYLEHWIVPVPIEQ"
misc_feature 349812..349937
/locus_tag="CDBI1_01485"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature 349833..350084
/locus_tag="CDBI1_01485"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature 349974..350084
/locus_tag="CDBI1_01485"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature 350208..350660
/locus_tag="CDBI1_01485"
/note="GyrI-like small molecule binding domain; Region:
GyrI-like; cl01368"
/db_xref="CDD:207387"
gene 350699..351115
/locus_tag="CDBI1_01490"
/db_xref="GeneID:12216124"
CDS 350699..351115
/locus_tag="CDBI1_01490"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197466.1"
/db_xref="GI:384359614"
/db_xref="GeneID:12216124"
/translation="MNWQDAFFQDTKPTFEQINEFINNPLWDKLNKTLVSTYNVEPKL
EYSKCSMQRGWNVKYKKRGKSLCTLYPQEGYFKALVIVSESNRVEVDLFINTCCDYIK
KIYNEVNFFNGSKWLMIQVDSLLVLNDMLELIKFRA"
misc_feature 350723..351112
/locus_tag="CDBI1_01490"
/note="Protein of unknown function (DUF3788); Region:
DUF3788; pfam12663"
/db_xref="CDD:205001"
gene complement(351209..351601)
/locus_tag="CDBI1_01495"
/db_xref="GeneID:12216125"
CDS complement(351209..351601)
/locus_tag="CDBI1_01495"
/note="COG1733 Predicted transcriptional regulators"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_006197467.1"
/db_xref="GI:384359615"
/db_xref="GeneID:12216125"
/translation="MSINTEKNITKNVEELTCPIRYALDIVGGKWKLPIICMLAVENP
IRYSSIKRKLDGITNTMLAQSLKDLESTGIVHRKQYNEIPPKVEYTLTSKGKSIVPIL
QQFANWGATNMQEKNTCGLSCKECRKIK"
misc_feature complement(351251..351574)
/locus_tag="CDBI1_01495"
/note="Predicted transcriptional regulators
[Transcription]; Region: COG1733"
/db_xref="CDD:31919"
gene 351742..352137
/locus_tag="CDBI1_01500"
/db_xref="GeneID:12216126"
CDS 351742..352137
/locus_tag="CDBI1_01500"
/note="COG5015 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197468.1"
/db_xref="GI:384359616"
/db_xref="GeneID:12216126"
/translation="MKALEFLNKAGVYYLATVDENNQAHVRPLGFVMEYNGKLTFCTS
NQKDMFKQLIFNPKVELCCIDQNLNTLRILGEAVFVTSKETQAKALEIMPSLGQMYSV
GDGKFEIFSIDKAKVSCCSMSGKKIDVEL"
misc_feature 351745..352113
/locus_tag="CDBI1_01500"
/note="Pyridoxine 5'-phosphate (PNP) oxidase-like
proteins; Region: PNPOx_like; cl00381"
/db_xref="CDD:214059"
gene 352540..352746
/locus_tag="CDBI1_01505"
/db_xref="GeneID:12216127"
CDS 352540..352746
/locus_tag="CDBI1_01505"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197469.1"
/db_xref="GI:384359617"
/db_xref="GeneID:12216127"
/translation="MSKYSSLWEYVKKNNSQSFKLTFEEIKDIAGIEIDHSFLKYKKE
LNEYGYQVGKISLKEKTVIFNKID"
gene complement(353057..353800)
/locus_tag="CDBI1_01510"
/db_xref="GeneID:12216128"
CDS complement(353057..353800)
/locus_tag="CDBI1_01510"
/note="COG1387 Histidinol phosphatase and related
hydrolases of the PHP family"
/codon_start=1
/transl_table=11
/product="putative hydrolase"
/protein_id="YP_006197470.1"
/db_xref="GI:384359618"
/db_xref="GeneID:12216128"
/translation="MNFLSDLHTHSIVSGHGYSTLLENINYCKENGIKILGTSEHGPK
MPGSPHRWYFHNIQNIPRIINNIIILRGCEANILDIKGNIDLEPFVIPRLDYLILSFH
EAVFSPNTLENNTKALINAINKHDNIEILGHLGNPNYPIDYELIIKLAIEKNILIEIN
NCSIKGVSRNGSSDNCKYIATLCKKYGAKIILTSDAHICFDIGNYEYSENILKEINFP
DELIMNYPKKLINHFHQKGKLLDVDYTNI"
misc_feature complement(353060..353800)
/locus_tag="CDBI1_01510"
/note="putative hydrolase; Validated; Region: PRK09248"
/db_xref="CDD:181726"
misc_feature complement(353093..353794)
/locus_tag="CDBI1_01510"
/note="Polymerase and Histidinol Phosphatase domain of
Ycdx like; Region: PHP_HisPPase_Ycdx_like; cd07437"
/db_xref="CDD:213992"
misc_feature complement(order(353210..353212,353216..353218,
353402..353404,353495..353497,353579..353581,
353678..353680,353753..353755,353771..353773,
353777..353779))
/locus_tag="CDBI1_01510"
/note="active site"
/db_xref="CDD:213992"
gene 353966..356533
/locus_tag="CDBI1_01515"
/db_xref="GeneID:12216129"
CDS 353966..356533
/locus_tag="CDBI1_01515"
/note="COG1221 Transcriptional regulators containing an
AAA-type ATPase domain and a DNA-binding domain"
/codon_start=1
/transl_table=11
/product="transcription antiterminator"
/protein_id="YP_006197471.1"
/db_xref="GI:384359619"
/db_xref="GeneID:12216129"
/translation="MTQKKLSRKEKVLICLKRLTEEHLNFNNGIRFGFDAEYIATEVG
INRSNASKELNQLIKESIIIKIKGKPVQYLYKESIESILGKKLNKGIFDNINSINEYS
ENDSIKDEYILESIKKENNIFNLVGCDGSLRSQIEQAKAAVIYPPKGLSTLIIGPTGV
GKSIFAEYMYKYSLTIKEDSDNAPFIIFNCADYSDNQQLLLAQLFGYVKGAFTGADKD
KYGIVHEANNGVLFLDEVHRLSAEGQEMLFLLMDKGIYRRLGEANKVHECRVMIIAAT
TEDPETAMLETFLRRIPVTIKIPSLEERGFQERMKLICYFFKEESVRIGVKLKVSKEV
IKAFILYKCKGNIGQLKSDIQLICARAFLDYMTYKRECVYVRLSLLPNNIRESLYGNN
RKEEFVQNFSFIGKDDIIFLPEEKDFESENLLIENKKYDLDFYGMIKETWNKLQQEGI
KESQIRSVIDGDIQKYSYNLMNTFIYNNSNQTAYNNIVNDSIATTVKYILQKHDKWSK
REGLDKLIKAIALHIQNLIERIKIGNIVKHPNKDEIMKERAYEYNIAKEILSNMSLMY
GVEFPEDEAIFLATFLYLSYVGLNEESIAILVIMHGESTASSMVNVANTLLDCNHAVA
INMGLEDRVQDILVQAVEIANKIDKGKGILILTDMGSILTFAKVIRDATGKEVKAVDM
VSTPIVIEATRKALTPEMTLEKLYFNIIESIKKHYGDMEVTYAEKDNGGRYFDRLLID
NISKTLTFLNGEKAYFILKEVINRISEHYSLVIQDELLVKFIFHCSCMIERVIIKESL
VYKSYEERISRNKELYLVIKESFKLVEETFDIIISDMEYANILDIFESQYDTDKFKS"
misc_feature 354062..355324
/locus_tag="CDBI1_01515"
/note="Transcriptional regulators containing an AAA-type
ATPase domain and a DNA-binding domain [Transcription /
Signal transduction mechanisms]; Region: PspF; COG1221"
/db_xref="CDD:31414"
misc_feature 354368..354865
/locus_tag="CDBI1_01515"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 354431..354454
/locus_tag="CDBI1_01515"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(354434..354457,354665..354667,354794..354796)
/locus_tag="CDBI1_01515"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 354653..354670
/locus_tag="CDBI1_01515"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 354836..354838
/locus_tag="CDBI1_01515"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 355502..355714
/locus_tag="CDBI1_01515"
/note="PRD domain; Region: PRD; pfam00874"
/db_xref="CDD:201484"
misc_feature 355745..356110
/locus_tag="CDBI1_01515"
/note="PTS_IIA, PTS system, mannose/sorbose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_man; cl00025"
/db_xref="CDD:206789"
misc_feature order(355766..355768,355811..355816,355844..355846,
355946..355948,356042..356044)
/locus_tag="CDBI1_01515"
/note="active pocket/dimerization site"
/db_xref="CDD:28890"
misc_feature order(355766..355768,355937..355939,355946..355948)
/locus_tag="CDBI1_01515"
/note="active site"
/db_xref="CDD:28890"
misc_feature 355766..355768
/locus_tag="CDBI1_01515"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:28890"
misc_feature 356240..356503
/locus_tag="CDBI1_01515"
/note="PRD domain; Region: PRD; pfam00874"
/db_xref="CDD:201484"
gene 356763..357167
/locus_tag="CDBI1_01520"
/db_xref="GeneID:12216130"
CDS 356763..357167
/locus_tag="CDBI1_01520"
/note="'COG2893 Phosphotransferase system,
mannose/fructose-specific component IIA'"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIA"
/protein_id="YP_006197472.1"
/db_xref="GI:384359620"
/db_xref="GeneID:12216130"
/translation="MIGIIVMTHGSFSEEIIKSCELIAGPAERTAAIKLNRNDNIEDL
NKNFVEKLNELDEGDGVLVLADLLGGSPSNVASLNLKKGGKFHALTGVNLPMLLEALI
NREGKSLEELAEACIEAGQTGINNINKVLSSM"
misc_feature 356766..357125
/locus_tag="CDBI1_01520"
/note="PTS_IIA, PTS system, mannose/sorbose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_man; cd00006"
/db_xref="CDD:28890"
misc_feature order(356787..356789,356829..356834,356865..356867,
356973..356975,357066..357068)
/locus_tag="CDBI1_01520"
/note="active pocket/dimerization site"
/db_xref="CDD:28890"
misc_feature order(356787..356789,356958..356960,356973..356975)
/locus_tag="CDBI1_01520"
/note="active site"
/db_xref="CDD:28890"
misc_feature 356787..356789
/locus_tag="CDBI1_01520"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:28890"
gene 357191..357688
/locus_tag="CDBI1_01525"
/db_xref="GeneID:12216131"
CDS 357191..357688
/locus_tag="CDBI1_01525"
/note="'COG3444 Phosphotransferase system,
mannose/fructose/N-acetylgalactosamine-specific component
IIB'"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIB"
/protein_id="YP_006197473.1"
/db_xref="GI:384359621"
/db_xref="GeneID:12216131"
/translation="MSLVKYCRCDDRLIHGQVIYKWVKHLGVKKIVVVDDETTNDVIA
KGLIKMAAPKNIDLSILTVSESRRYFYNNQADDNVFVLIKNLDTANRMIEEGINIKKL
IVGRIPTGIGKKKISQNVYINKKEFLLIDEFIKKNINVSIQMVPDEEEVELNQNINRY
KGEFI"
misc_feature 357209..357646
/locus_tag="CDBI1_01525"
/note="PTS system sorbose subfamily IIB component; Region:
PTSIIB_sorb; pfam03830"
/db_xref="CDD:190766"
misc_feature order(357212..357214,357224..357226,357233..357235)
/locus_tag="CDBI1_01525"
/note="active site"
/db_xref="CDD:28885"
misc_feature 357233..357235
/locus_tag="CDBI1_01525"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:28885"
gene 357691..358092
/locus_tag="CDBI1_01530"
/db_xref="GeneID:12216132"
CDS 357691..358092
/locus_tag="CDBI1_01530"
/codon_start=1
/transl_table=11
/product="PTS system, IIa component"
/protein_id="YP_006197474.1"
/db_xref="GI:384359622"
/db_xref="GeneID:12216132"
/translation="MNKYKVIILCHGTWGKVLVEETNKNFGLSNQYEVLSLSSEKDVS
VFMKEVEEVVDKEDVKIIISDLYGGSTSSVAIAVAIRRGIDAINGLSLQTILIVDEEL
SKEDKLHTLPERIVKKNNNLCVDLIKEFKKI"
misc_feature 357703..358047
/locus_tag="CDBI1_01530"
/note="PTS_IIA, PTS system, mannose/sorbose specific IIA
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIA_man; cl00025"
/db_xref="CDD:206789"
misc_feature order(357721..357723,357763..357768,357799..357801,
357898..357900,357988..357990)
/locus_tag="CDBI1_01530"
/note="active pocket/dimerization site"
/db_xref="CDD:28890"
misc_feature order(357721..357723,357883..357885,357898..357900)
/locus_tag="CDBI1_01530"
/note="active site"
/db_xref="CDD:28890"
misc_feature 357721..357723
/locus_tag="CDBI1_01530"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:28890"
gene 358110..358598
/locus_tag="CDBI1_01535"
/db_xref="GeneID:12216133"
CDS 358110..358598
/locus_tag="CDBI1_01535"
/note="'COG3444 Phosphotransferase system,
mannose/fructose/N-acetylgalactosamine-specific component
IIB'"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIB"
/protein_id="YP_006197475.1"
/db_xref="GI:384359623"
/db_xref="GeneID:12216133"
/translation="MAKITLVRVDHRLIHGQVITKWVKIAQAQKIIIVDDFLGQDEFM
ADIYKMAAPSGVEVVILTAEDAGQAFQNNTLGDKNIFILFKNVDMANKAYKAGLKYEK
IQLGGIPNEAGKKMVFTAVSLGNEDVEQLNELNENGVEIVLQVIPEESSMTYENALKK
FK"
misc_feature 358116..358562
/locus_tag="CDBI1_01535"
/note="PTS system sorbose subfamily IIB component; Region:
PTSIIB_sorb; pfam03830"
/db_xref="CDD:190766"
misc_feature order(358131..358133,358143..358145,358152..358154)
/locus_tag="CDBI1_01535"
/note="active site"
/db_xref="CDD:28885"
misc_feature 358152..358154
/locus_tag="CDBI1_01535"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:28885"
gene 358625..359380
/locus_tag="CDBI1_01540"
/db_xref="GeneID:12216134"
CDS 358625..359380
/locus_tag="CDBI1_01540"
/note="'COG3715 Phosphotransferase system,
mannose/fructose/N-acetylgalactosamine-specific component
IIC'"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIC"
/protein_id="YP_006197476.1"
/db_xref="GI:384359624"
/db_xref="GeneID:12216134"
/translation="MESVLMLAIVTGLWYWFAAGLAGYTLFSTLKSPLFIGFSLGLLW
GDVTTGMIVGASIEMVYLGMVAAGGNIPSDKCLAALIAIPVALQTGVNAEVAVSIAVP
LGVIGVLVNNLRRTGNAVLVHKADKYAEEGNTKGIWRCATLYSLIFGFVLRFPIVFVC
NFFGADLVQSLLDVIPQWLMNGLTVMGGILPALGFATTIFTIGKNKFLPMFIIGFFMV
QYFEISITAAAIFGVCIALLITFMKEDKRVGEV"
misc_feature 358625..359341
/locus_tag="CDBI1_01540"
/note="PTS system sorbose-specific iic component; Region:
EII-Sor; pfam03609"
/db_xref="CDD:146312"
gene 359380..360243
/locus_tag="CDBI1_01545"
/db_xref="GeneID:12216135"
CDS 359380..360243
/locus_tag="CDBI1_01545"
/note="'COG3716 Phosphotransferase system,
mannose/fructose/N-acetylgalactosamine-specific component
IID'"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IID"
/protein_id="YP_006197477.1"
/db_xref="GI:384359625"
/db_xref="GeneID:12216135"
/translation="MQEIKNKEVKNGQGPTEVNKTRVLTKKDVTKTYLRWWWTAELSN
SFERMQALAVCASFTPALEKLYKKKEDLVDALKRHLQFFNTQAIWGGLIHGTVLAMEE
EKATEGKIPGEVISGVKNGLMGPLAGIGDTLDFGTFQTIFLALGASFGAEGSVIGAFF
PIMFSILLFCEGYYLFHLGYSLGRDSIKKILSGGIVNKIIDGASILGMFMMGALSATT
VKLSTPLSFDIGGKAIVVQDTLNMIAPGLLPLGVVFFVYWGMKYKKWTITKLLVILVV
LALVGSFIGIF"
misc_feature 359446..360240
/locus_tag="CDBI1_01545"
/note="PTS system mannose/fructose/sorbose family IID
component; Region: EIID-AGA; pfam03613"
/db_xref="CDD:146316"
gene 360290..360769
/locus_tag="CDBI1_01550"
/db_xref="GeneID:12216136"
CDS 360290..360769
/locus_tag="CDBI1_01550"
/note="'COG0715 ABC-type nitrate/sulfonate/bicarbonate
transport systems, periplasmic components'"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197478.1"
/db_xref="GI:384359626"
/db_xref="GeneID:12216136"
/translation="MSEKMYTEKEYLEGIRGATGERAVWFYLLMKEAEKLGANPDDIC
KEAIYGFGKMRGQKYNVADTPGKMAEMLYNSKGQKVFEMELVENTDENGVLKFHHCPL
DAAWKEYGLTKEERKEICRLACYGDYGRVDCAQGVKLDFAQKCAHDDEVCELVFTKK"
misc_feature 360353..360757
/locus_tag="CDBI1_01550"
/note="L-2-amino-thiazoline-4-carboxylic acid hydrolase;
Region: ATC_hydrolase; pfam14196"
/db_xref="CDD:206364"
gene 360834..362141
/locus_tag="CDBI1_01555"
/db_xref="GeneID:12216137"
CDS 360834..362141
/locus_tag="CDBI1_01555"
/note="COG0624 Acetylornithine
deacetylase/Succinyl-diaminopimelate desuccinylase and
related deacylases"
/codon_start=1
/transl_table=11
/product="peptidase"
/protein_id="YP_006197479.1"
/db_xref="GI:384359627"
/db_xref="GeneID:12216137"
/translation="MDISRSVDNSLNRTIEFLKELIKIDSQQGEPISQCPFGIGPKKS
LDKTLDYCASLGFSVKNIDNYIGYAEIGEGEELIGIPMHLDIVPPGEGWSVDPFSGAV
IDNIIYGRGVIDNKGAVSMLIHVLKNIEDMYPTINKRIRLIFGTNEETDMKCIKYYLD
KGEEIPSMGFTPDAMYPVVNGEKGRVHIRIEKEIKIDKSKPYIIVRGGTKENVVPSHC
TAKIINGIISELTTKGVAVHASNPEKGENAISKMVIKIVEDNMDFQHREDIELVSKYL
CSDYYGDALGINQYDEVFKNTTLNLGILKVNEEKIVCELDIRYGKNIVLNNIIDRFKK
VFCNGWKIEVIAHKDLHYVDESNLVLKKLLEAYEEVTDENGYTIAMGGGTYASWFKDM
VAFGPKFLAYKTGGHGVDERVPINHIRKNMEIYTLALIKLLEL"
misc_feature 360834..362129
/locus_tag="CDBI1_01555"
/note="dipeptidase PepV; Reviewed; Region: PRK07318"
/db_xref="CDD:180927"
misc_feature 360876..362129
/locus_tag="CDBI1_01555"
/note="M20 Peptidase Xaa-His dipeptidase (PepV) degrades
hydrophobic dipeptides; Region: M20_PepV; cd03888"
/db_xref="CDD:193509"
misc_feature order(361080..361082,361173..361178,361275..361280,
361350..361355,361467..361469,361545..361547,
361785..361787,361977..361982,362043..362045,
362049..362054)
/locus_tag="CDBI1_01555"
/note="active site"
/db_xref="CDD:193509"
misc_feature order(361080..361082,361173..361175,361275..361280,
361350..361352,362052..362054)
/locus_tag="CDBI1_01555"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193509"
gene 363104..364198
/locus_tag="CDBI1_01560"
/db_xref="GeneID:12216138"
CDS 363104..364198
/locus_tag="CDBI1_01560"
/note="COG1396 Predicted transcriptional regulators"
/codon_start=1
/transl_table=11
/product="DNA-binding protein"
/protein_id="YP_006197480.1"
/db_xref="GI:384359628"
/db_xref="GeneID:12216138"
/translation="MNELNIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSY
PDITFLPQLATYFNITVDELICYEPQMMKEDINKLYNKLCKDFTVKPFDEVMDEIREI
IKKYYSCFPLIFRMGLLIVNHYDIVDEKKRELLISEALEIFIRIQETCNDIDICRQAK
SMEATCYILLNQPIQVIDLLQNSNFPMINESILLAQGQMMNGQMDEARETFQLGAYQN
LISLVQNLVGILQNADKLQMKEIERRILAISDIFELDTLSPAIMLSSYLTQTQINLIH
GDNEGAIKSLRKYVDLATRDIYPIIIHGDDFFNKLDRWISEIGTGITRDDTIVKAGIV
AAIKNNPMFSLLSENKEYKFLIEKLSLLEE"
misc_feature 363122..363295
/locus_tag="CDBI1_01560"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature order(363134..363136,363146..363148,363221..363223)
/locus_tag="CDBI1_01560"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(363143..363145,363218..363220)
/locus_tag="CDBI1_01560"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(363164..363169,363200..363202,363209..363211,
363221..363226)
/locus_tag="CDBI1_01560"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
gene 364203..364403
/locus_tag="CDBI1_01565"
/db_xref="GeneID:12216139"
CDS 364203..364403
/locus_tag="CDBI1_01565"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197481.1"
/db_xref="GI:384359629"
/db_xref="GeneID:12216139"
/translation="MENLMEYLPLLIPVIILDLILIITALVHVLRHPNYKIGNKAIWI
IVVLFISLIGPILYFTIGRGEE"
misc_feature 364272..364391
/locus_tag="CDBI1_01565"
/note="Phospholipase_D-nuclease N-terminal; Region:
PLDc_N; pfam13396"
/db_xref="CDD:205574"
gene 364403..365320
/locus_tag="CDBI1_01570"
/db_xref="GeneID:12216140"
CDS 364403..365320
/locus_tag="CDBI1_01570"
/note="'COG1131 ABC-type multidrug transport system,
ATPase component'"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_006197482.1"
/db_xref="GI:384359630"
/db_xref="GeneID:12216140"
/translation="MNIVSINGLSKGFGNRKIIDNLNFTVPEGSVFGFVGKNGAGKTT
TMKMVLGLLEPDSGTIDVCGEKVTYGRTSSNRHVGYLPDVPEFYNYMRPLEYLSLCGE
ITGLSKKEIKIRSEELLSLVGLGNEKRRIGGFSRGMKQRLGIAQALLSRPKLLICDEP
TSALDPVGRKEILDIMLKIKDSTTVIFSTHILSDVERICDHVAILNKGSIALSGTLSE
IKSMHGKDRLLLEFASNNEIQKFKSSGGIKSLLKDSEETNMEIVLHGKDIKAIQKTVI
STLAEMNLCPVKMELIELSLENLFLEVVK"
misc_feature 364403..365317
/locus_tag="CDBI1_01570"
/note="ABC-type multidrug transport system, ATPase
component [Defense mechanisms]; Region: CcmA; COG1131"
/db_xref="CDD:31326"
misc_feature 364412..365032
/locus_tag="CDBI1_01570"
/note="ATP-binding cassette domain of the drug resistance
transporter and related proteins, subfamily A; Region:
ABC_DR_subfamily_A; cd03230"
/db_xref="CDD:213197"
misc_feature 364508..364531
/locus_tag="CDBI1_01570"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213197"
misc_feature order(364517..364522,364526..364534,364649..364651,
364874..364879,364970..364972)
/locus_tag="CDBI1_01570"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213197"
misc_feature 364640..364651
/locus_tag="CDBI1_01570"
/note="Q-loop/lid; other site"
/db_xref="CDD:213197"
misc_feature order(364697..364699,364805..364831)
/locus_tag="CDBI1_01570"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213197"
misc_feature 364862..364879
/locus_tag="CDBI1_01570"
/note="Walker B; other site"
/db_xref="CDD:213197"
misc_feature 364886..364897
/locus_tag="CDBI1_01570"
/note="D-loop; other site"
/db_xref="CDD:213197"
misc_feature 364958..364978
/locus_tag="CDBI1_01570"
/note="H-loop/switch region; other site"
/db_xref="CDD:213197"
gene 365317..366075
/locus_tag="CDBI1_01575"
/db_xref="GeneID:12216141"
CDS 365317..366075
/locus_tag="CDBI1_01575"
/note="'COG1277 ABC-type transport system involved in
multi-copper enzyme maturation, permease component'"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_006197483.1"
/db_xref="GI:384359631"
/db_xref="GeneID:12216141"
/translation="MREYIAFTKKEFKENIRNYKLLSLTILFLVFGIMSPLSAKFMPD
LIAHFAPTLKVTTAPTALDSWTQFSGNISGLGTSLTLIVFCNILSNEYSKGTLVIMLT
KGLSRSSVVLSKFSIAVIIMTIGFWLSFLCTYGYTMYFWPTANLNHIIFSAFNLWLIS
IMYISILILGCVLFRPAFASVLLVLAATAILSLISIPKQIAPYTPNFILSKNIDLVSG
KVTPPEFIIPIIVTIVISIVCLLLAVVLFNKKAV"
misc_feature 365341..>365742
/locus_tag="CDBI1_01575"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:214176"
gene 366458..367531
/locus_tag="CDBI1_01580"
/db_xref="GeneID:12216142"
CDS 366458..367531
/locus_tag="CDBI1_01580"
/note="COG2768 Uncharacterized Fe-S center protein"
/codon_start=1
/transl_table=11
/product="iron-sulfur-binding protein"
/protein_id="YP_006197484.1"
/db_xref="GI:384359632"
/db_xref="GeneID:12216142"
/translation="MEKSKVYFCDLYSNSQNKNVPNNVRRLFDEAGFKDLIEKNDQVA
IKLHFGEKGNTTYMSPVAVRQVVDKVKDCEGKPFLTDTNTLYTGSRTNSVDHLTTAIE
NGFAYAVVNAPVIIADGLYSRNYENVKIDKKHFESVKIGGEIYNSSAMIVMSHFKGHE
AAGFGGALKNLAMGCASAAGKQMQHSDVTPVVKEKKCVGCGKCVNSCPTKAISIVDKK
AVIDSDVCYGCGECPTVCPTRAVTIQWESDSDVFVEKMAEYAYGAVSNKKDKVGYITF
VMNVTPLCDCVPWSGRPIAHDIGILASTDPVAIEQACYDLICKEMGHDVFKHEHPHVN
GTRIIDYACEMGMGSKEYELIKL"
misc_feature 366467..367528
/locus_tag="CDBI1_01580"
/note="Uncharacterized Fe-S center protein [General
function prediction only]; Region: COG2768"
/db_xref="CDD:32630"
gene 367601..367864
/locus_tag="CDBI1_01585"
/db_xref="GeneID:12216143"
CDS 367601..367864
/locus_tag="CDBI1_01585"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197485.1"
/db_xref="GI:384359633"
/db_xref="GeneID:12216143"
/translation="MKIYYEKENSKKANVNNIPSVFAFNFLRNFLTSKEYEETRKEYF
INNLTKSQVNQAMKDLKWLFREYEGLEVITMESLDGVKTRIVL"
gene 368070..369047
/locus_tag="CDBI1_01590"
/db_xref="GeneID:12216144"
CDS 368070..369047
/locus_tag="CDBI1_01590"
/note="COG0502 Biotin synthase and related enzymes"
/codon_start=1
/transl_table=11
/product="biotin synthase"
/protein_id="YP_006197486.1"
/db_xref="GI:384359634"
/db_xref="GeneID:12216144"
/translation="MEKYIIKLKNKVLREKEISYEEALNLISLDTNNKNDFDILLKSA
NEIREYFMGRKADLCTIMNAKSGKCSEDCKFCAQSSHYKTGVEEYSLLDYNEILNRAK
EMESKGVHRFSLVTSGKGMSGKEFNNILNIYEGLRENTNLKLCASLGIIDYEQAKMLK
SAGVTTYHHNVETCRDNFHNICTTHTYKDRIKTIKDAKKAGLDVCVGGIIGMNESEEQ
RLKMVFEIRELNVKSFPINILNPIKNTPMENYDVLEPMEILKTTAVFRFIIPNVYIRY
AGGRLSLKGYDKVGFNGGVNSAIVGDYLTTVGSGIENDKKMIIEQGFEL"
misc_feature 368175..369041
/locus_tag="CDBI1_01590"
/note="biotin synthase; Region: bioB; TIGR00433"
/db_xref="CDD:200012"
misc_feature 368274..368855
/locus_tag="CDBI1_01590"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature order(368274..368276,368280..368282,368286..368288,
368292..368300,368412..368414,368418..368423,
368502..368510,368577..368579,368694..368696,
368781..368786)
/locus_tag="CDBI1_01590"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
misc_feature 368772..369041
/locus_tag="CDBI1_01590"
/note="Biotin and Thiamin Synthesis associated domain;
Region: BATS; pfam06968"
/db_xref="CDD:148534"
gene 369275..370288
/locus_tag="CDBI1_01595"
/db_xref="GeneID:12216145"
CDS 369275..370288
/locus_tag="CDBI1_01595"
/note="COG1609 Transcriptional regulators"
/codon_start=1
/transl_table=11
/product="ribose operon repressor"
/protein_id="YP_006197487.1"
/db_xref="GI:384359635"
/db_xref="GeneID:12216145"
/translation="MSITIKEIGELAGVSKTTVSKVINNKDENISQATREKILKIMKE
KNYVPNKLAQSLVTKKTNTIGLLIPDIRNPFFTDVSRGVEDKANEEGYNIILCNTDED
AKKEYEGIRTLSERMIDGIIFAASSNTNWKEANYKDIKIPTVLIDKKISMNKETLKGI
VKINNFEGAYIATKHLLDIGNKKIIYLSGPLQNEIAVDRLEGYKKALIECNLSYNSAY
VFEGKYKIEWGQEFIKNLEKIDFDAIFCANDLIAIGVIRGLKERGLSIPNDVSVVGFD
DIQTSSLISPSLTTVKQPSYDIGYKASEILINCLRGDKKESFDELIFKPELVIRDSTK
ESE"
misc_feature 369281..370276
/locus_tag="CDBI1_01595"
/note="Transcriptional regulators [Transcription]; Region:
PurR; COG1609"
/db_xref="CDD:31797"
misc_feature 369290..369448
/locus_tag="CDBI1_01595"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; Region:
HTH_LacI; cd01392"
/db_xref="CDD:143331"
misc_feature order(369290..369292,369314..369328,369332..369337,
369344..369346,369362..369367,369374..369376,
369413..369415,369422..369424,369431..369436,
369440..369445)
/locus_tag="CDBI1_01595"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:143331"
misc_feature 369413..369442
/locus_tag="CDBI1_01595"
/note="domain linker motif; other site"
/db_xref="CDD:143331"
misc_feature 369461..370258
/locus_tag="CDBI1_01595"
/note="Ligand binding domain of the LacI tanscriptional
regulator family belonging to the type I
periplasmic-binding fold protein superfamily; Region:
PBP1_LacI_sugar_binding_like; cd06267"
/db_xref="CDD:107262"
misc_feature order(369461..369463,369500..369508,369515..369520,
369524..369529,369548..369562,369566..369568,
369599..369601,369608..369610,369617..369625,
369953..369955,370031..370033,370043..370045,
370052..370057)
/locus_tag="CDBI1_01595"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:107262"
misc_feature order(369497..369502,369509..369511,369644..369646,
369713..369715,369761..369763,369869..369871,
369944..369946,370100..370102,370151..370153)
/locus_tag="CDBI1_01595"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107262"
gene 370330..371220
/locus_tag="CDBI1_01600"
/db_xref="GeneID:12216146"
CDS 370330..371220
/locus_tag="CDBI1_01600"
/note="'COG0524 Sugar kinases, ribokinase family'"
/codon_start=1
/transl_table=11
/product="ribokinase"
/protein_id="YP_006197488.1"
/db_xref="GI:384359636"
/db_xref="GeneID:12216146"
/translation="MGNIVVIGSVNMDMVCSVDKRPEKGETVLGNSFFTSPGGKGANQ
AISASKLGANVKMISCIGEDGLGEELIRNFRTNKVDYSLVSRNNHKSSGVAVITLCEN
DNSIVVVPGTNELVDIELIKKNEEEIKNADIVLLQLEIPLKTINYVVNFCFENRIKVL
LNPAPAVKLNEDIIEKVTYLTPNEHEYKIVFDTNEGIEEVLKKYPNKLVITEGKNGAR
FYDGEEIKHVSCISVDVQDTTGAGDTFNGALAVAITEGKKLYTAVEYAVVVSGLSVTK
LGAQSGMPYKEDVEKYLNNK"
misc_feature 370336..371214
/locus_tag="CDBI1_01600"
/note="Sugar kinases, ribokinase family [Carbohydrate
transport and metabolism]; Region: RbsK; COG0524"
/db_xref="CDD:30870"
misc_feature 370336..371184
/locus_tag="CDBI1_01600"
/note="Ribokinase catalyses the phosphorylation of ribose
to ribose-5-phosphate using ATP. This reaction is the
first step in the ribose metabolism. It traps ribose
within the cell after uptake and also prepares the sugar
for use in the synthesis of nucleotides...; Region:
ribokinase; cd01174"
/db_xref="CDD:29358"
misc_feature order(370360..370362,370366..370368,370441..370449,
370456..370458,370612..370614,370618..370620,
370645..370647,370651..370653,370744..370746,
371044..371049,371056..371058,371164..371166)
/locus_tag="CDBI1_01600"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:29358"
misc_feature order(370369..370371,370375..370377,370390..370410,
370447..370449,370609..370611,370615..370623,
370636..370659,370822..370824)
/locus_tag="CDBI1_01600"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:29358"
misc_feature order(370876..370878,370960..370968,370975..370977,
371014..371016,371032..371034,371041..371043,
371050..371055,371062..371064,371128..371130,
371137..371142,371149..371151)
/locus_tag="CDBI1_01600"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:29358"
gene 371268..372230
/locus_tag="CDBI1_01605"
/db_xref="GeneID:12216147"
CDS 371268..372230
/locus_tag="CDBI1_01605"
/note="'COG1879 ABC-type sugar transport system,
periplasmic component'"
/codon_start=1
/transl_table=11
/product="D-ribose ABC transporter substrate-binding
protein"
/protein_id="YP_006197489.1"
/db_xref="GI:384359637"
/db_xref="GeneID:12216147"
/translation="MRVRKILSLGIAGILAIGMLTGCSMEGPSKSDNKGGSDKKDLTI
GVSTITLQHQFFIDIDEGIKEKAKELGVKVIVNDPDQDVAKQTSAIEDFIQQNVDGMI
VLGTDNSAIVPAVEGAFEKMPVVTVDAVLNTENITSYVGTVSYDAGKKLGEYTKKYID
EKLGGKSEIAIVTDLKSQIQMQRIDGFKDALKGSANVKILNSQPGYDREESLNTVENL
IQSNPDVDIIYATAENSVLGAKAALESAKNKDVKIVGFDLTEEASSGITDGTILAMIQ
QQPKEMGRLAVEAVVKAIKGEKVEKNIPVPALLYDKENIKDFKN"
misc_feature 371394..372185
/locus_tag="CDBI1_01605"
/note="Periplasmic sugar-binding domain of active
transport systems that are members of the type I
periplasmic binding protein (PBP1) superfamily; Region:
PBP1_ABC_sugar_binding_like; cd01536"
/db_xref="CDD:107249"
misc_feature 371397..372161
/locus_tag="CDBI1_01605"
/note="Periplasmic binding protein domain; Region:
Peripla_BP_4; pfam13407"
/db_xref="CDD:205585"
misc_feature order(371430..371432,371649..371651,371814..371816,
372036..372038,372096..372098)
/locus_tag="CDBI1_01605"
/note="ligand binding site [chemical binding]; other site"
/db_xref="CDD:107249"
gene 372284..373795
/locus_tag="CDBI1_01610"
/db_xref="GeneID:12216148"
CDS 372284..373795
/locus_tag="CDBI1_01610"
/note="'COG1129 ABC-type sugar transport system, ATPase
component'"
/codon_start=1
/transl_table=11
/product="ribose ABC transporter, ATP-binding protein"
/protein_id="YP_006197490.1"
/db_xref="GI:384359638"
/db_xref="GeneID:12216148"
/translation="MSNIILKLSNIAKEFPGVRALDNVNFELFHGEVHALLGENGAGK
STMIKILTGAHSKTSGKFIFEGKEIENISPDISKKIGINAIYQELTVFDELTVAQNIF
MGKEINGKVLTNDKKMNEEAKKIFDNMGIDINPNSLVKELSIAQKQMVEIARVLSSET
KVLIMDEPTSSISKKETEILFRLINDLKESGVSIIYISHRMEELFEICDRITIMRDGK
TISTLNTKDVSSEEELVNLMIDRKLDQFFPKRKVEIKEEIMRVENLTKNNVFNDISFN
IRKGEILGIGGLVGSKRSEIVEAIFGLRTYDSGKIYLNNEEVKFKTPSDAIENGLGLI
TEDRKGTGLFLQMSVKENTTMAGLKKISKFKSIIDRKKEKEILEKYIEALKIKTPHMN
QVIQSLSGGNQQKAIIARWLLLQPDILIMDEPTRGIDVNAKAEIYNLMGDLVESGVSI
IMISSEIPELISMSDRIMVMREGHISGFLEGEEMVENNVLKLAFGGKINEFNN"
misc_feature 372284..373771
/locus_tag="CDBI1_01610"
/note="ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism]; Region: MglA;
COG1129"
/db_xref="CDD:31325"
misc_feature 372299..372949
/locus_tag="CDBI1_01610"
/note="First domain of the ATP-binding cassette component
of monosaccharide transport system; Region:
ABC_Carb_Monos_I; cd03216"
/db_xref="CDD:213183"
misc_feature 372395..372418
/locus_tag="CDBI1_01610"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213183"
misc_feature order(372404..372409,372413..372421,372542..372544,
372779..372784,372878..372880)
/locus_tag="CDBI1_01610"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213183"
misc_feature 372533..372544
/locus_tag="CDBI1_01610"
/note="Q-loop/lid; other site"
/db_xref="CDD:213183"
misc_feature order(372566..372577,372719..372736)
/locus_tag="CDBI1_01610"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213183"
misc_feature 372767..372784
/locus_tag="CDBI1_01610"
/note="Walker B; other site"
/db_xref="CDD:213183"
misc_feature 372791..372802
/locus_tag="CDBI1_01610"
/note="D-loop; other site"
/db_xref="CDD:213183"
misc_feature 372866..372886
/locus_tag="CDBI1_01610"
/note="H-loop/switch region; other site"
/db_xref="CDD:213183"
misc_feature 373049..373708
/locus_tag="CDBI1_01610"
/note="Second domain of the ATP-binding cassette component
of monosaccharide transport system; Region:
ABC_Carb_Monos_II; cd03215"
/db_xref="CDD:213182"
gene 373779..374777
/locus_tag="CDBI1_01615"
/db_xref="GeneID:12216149"
CDS 373779..374777
/locus_tag="CDBI1_01615"
/note="'COG1172 Ribose/xylose/arabinose/galactoside
ABC-type transport systems, permease components'"
/codon_start=1
/transl_table=11
/product="ribose ABC transporter, permease protein"
/protein_id="YP_006197491.1"
/db_xref="GI:384359639"
/db_xref="GeneID:12216149"
/translation="MSSITKHKEEKSSPLLTKLTSVFRDQGSAAVGLVIIFIIMSVAS
SNFLTLDNLINVGRQISINAILAVGMTFVIITGGIDLSVGAVIALVGTFWATTVVNYN
APIWVGMILALAIGTILGVIKGAIISTQKLPPFIVTLAMLTIISGASFVFTGGRPISV
NTDAFKMLGRGYIGPIPIPVIIMIIVVIAGHFLLKRTNFGRHVHAVGGNEEAARLCGV
KVNKVIVKVYALAGLLTALAGIILSSRLASGSPTVGDGAELDAIAAVVLGGTNMMGGS
GSIVGTCIGVGIIGILGNGLNLLSVSSYNQMIIKGLVMLFAIWINNIKLKKSAKSK"
misc_feature 373860..374588
/locus_tag="CDBI1_01615"
/note="ABC-type branched-chain amino acid transport
system, permease component [Amino acid transport and
metabolism]; Region: LivM; COG4177"
/db_xref="CDD:33917"
misc_feature 373956..374741
/locus_tag="CDBI1_01615"
/note="Transmembrane subunit (TM) of Escherichia coli AraH
and related proteins. E. coli AraH is the TM of a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of the
monosaccharide arabinose. This group...; Region:
TM_PBP1_transp_AraH_like; cd06579"
/db_xref="CDD:119321"
misc_feature 374409..374465
/locus_tag="CDBI1_01615"
/note="TM-ABC transporter signature motif; other site"
/db_xref="CDD:119321"
gene 374961..376223
/locus_tag="CDBI1_01620"
/db_xref="GeneID:12216150"
CDS 374961..376223
/locus_tag="CDBI1_01620"
/note="COG0624 Acetylornithine
deacetylase/Succinyl-diaminopimelate desuccinylase and
related deacylases"
/codon_start=1
/transl_table=11
/product="acetylornithine deacetylase"
/protein_id="YP_006197492.1"
/db_xref="GI:384359640"
/db_xref="GeneID:12216150"
/translation="MKKILLDTLNSKKQEYIDYLKELVSIKTEDVGHGILGGFEKEGQ
EYIEKLANYIGFSVDRQEMSEELIKKAKNIYKEGNLGHNYQDRYNLICKYSDDLPGKT
IVFNGHVDTMPPGDISKWKYNPYRATEDNGKLYGLGTADMKSGLIASILAVKLIKDSG
LNVPGNVKIMSVVDEEGGGNGTINAVMNGIGGDCCIICEPSEQNLIVAHMGFVFFEVE
VKGVSLHCGSKWEGVNAIEKAMLLLQDIKELEHNWLMIYKHPLLPSPTINLGVINGGT
AGSTVPDKCVFNLCVHFLPNIMSYEQVVNDVTNVIMTRANGDLWLKDNKPNINIYQSG
LGFQMDKDSDFVVNAHKILEETLGKKLEIKGSTAGNDARLMKNLAEIPTLILGPGSIE
QCHSIDEYVEIKEYLDSILMYASLILNL"
misc_feature 375009..376193
/locus_tag="CDBI1_01620"
/note="acetylornithine deacetylase or
succinyl-diaminopimelate desuccinylase; Region: DapE-ArgE;
TIGR01910"
/db_xref="CDD:162596"
misc_feature 375012..376214
/locus_tag="CDBI1_01620"
/note="Zinc peptidases M18, M20, M28, and M42; Region:
Zinc_peptidase_like; cl14876"
/db_xref="CDD:213133"
misc_feature order(375282..375284,375381..375383,375483..375488,
375555..375557,376143..376145)
/locus_tag="CDBI1_01620"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193495"
gene 376243..376986
/locus_tag="CDBI1_01625"
/db_xref="GeneID:12216151"
CDS 376243..376986
/locus_tag="CDBI1_01625"
/note="COG5426 Uncharacterized membrane protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197493.1"
/db_xref="GI:384359641"
/db_xref="GeneID:12216151"
/translation="MKKVLIVGESWVKNITHIKGFDTFVTTHYEEAVKWLKEAIESGG
YETVHMPAHVAADSFPYKLEELNEYDCIILSDIGSNTFLLSNSTFIDCNSNPDRLELI
KEYVNNGGALIMVGGYMSFTGIDAKARFGETAIKDVLPITMIDKDDRVEKPAGIIPEV
IDSEHPVLKGIPTEWPKFLGYNKTVARDNCPVLATIGGDPFVAVGEFGKGKSAIFSSD
CAPHWGPKEFTDWKYYNKLWVNMLDWLTC"
misc_feature 376246..376980
/locus_tag="CDBI1_01625"
/note="Type 1 glutamine amidotransferase (GATase1)-like
domain; Region: GAT_1; cl00020"
/db_xref="CDD:213412"
misc_feature 376594..376596
/locus_tag="CDBI1_01625"
/note="conserved cys residue [active]"
/db_xref="CDD:153222"
gene 377159..378544
/locus_tag="CDBI1_01630"
/db_xref="GeneID:12216152"
CDS 377159..378544
/locus_tag="CDBI1_01630"
/note="COG1473 Metal-dependent
amidase/aminoacylase/carboxypeptidase"
/codon_start=1
/transl_table=11
/product="aminobenzoyl-glutamate utilization protein"
/protein_id="YP_006197494.1"
/db_xref="GI:384359642"
/db_xref="GeneID:12216152"
/translation="MDNLNKKFLMEYIDEIQGELRDISDKIWKNPELQYKEYYASNLQ
KECLKKHGFSIEGLEGMDTAFVASYGEGRPVIAVLGEYDALDGLSQKVSTTKEPIVDG
GAGHGCGHNLLGTGSIGAVIAVKELIKLKKLKGTIKYYGCPAEEDLSGKVLMIKKGFF
DGIDCAFSWHPFDINTPIRIPTLANYSVKFRYNGISAHAAQAPYNGRSALDAVELMNI
GCNYLREHIFDNCRVHYVTTNGGKMPNIVPDFAEVWYYIRGVKMEHVRDVFGRIVDIA
KGAALMTGTIMEYDIISGVYDYIPNTILTDILSQNMKLVGVQNYNEDDYYFADKLAET
VSIDKRSSVSSVLSGNKDITKMNLHDEVTDDTFTHNNCISLSLDIGDVSYIIPTAQCS
CSVWPIGISAHTWQSCASAGSDMGFKAMLLASKSISCSINDVMLDELVINKAKKELKD
TVGSFEYTPII"
misc_feature 377195..378502
/locus_tag="CDBI1_01630"
/note="M20 Peptidase Aminoacylase 1-like protein 2
aminobenzoyl-glutamate utilization protein B subfamily;
Region: M20_Acy1L2_AbgB; cd05673"
/db_xref="CDD:193548"
misc_feature order(377480..377482,377486..377488,377594..377596,
377666..377668,378365..378367)
/locus_tag="CDBI1_01630"
/note="putative metal binding site [ion binding]; other
site"
/db_xref="CDD:193548"
gene complement(378881..379525)
/locus_tag="CDBI1_01635"
/db_xref="GeneID:12216153"
CDS complement(378881..379525)
/locus_tag="CDBI1_01635"
/note="COG0778 Nitroreductase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197495.1"
/db_xref="GI:384359643"
/db_xref="GeneID:12216153"
/translation="MNNLDKNNVNEVLDMLLRTRRSIRSFTKEVPSKGLIEEIIETGR
LAPYAILSVAKQTDFRHFFVISNNSLQMNKIKTILVDVIKTQISVNEKKAKNNITLQS
FITSLKMQVEKGVLGIGTAPYLIIVAERRGIPPIEQKSLSHVMQNMWLKSTALGLGFE
LVSVIGRLSDNKDFCDILGVPTGEYGFDACAIGFPTTSVTREGRAIPHPSIKWI"
misc_feature complement(378944..379477)
/locus_tag="CDBI1_01635"
/note="Nitroreductase family; Region: Nitroreductase;
pfam00881"
/db_xref="CDD:201487"
misc_feature complement(order(379028..379030,379037..379039,
379397..379399,379451..379453,379457..379459,
379463..379465))
/locus_tag="CDBI1_01635"
/note="FMN binding site [chemical binding]; other site"
/db_xref="CDD:73303"
misc_feature complement(order(379076..379078,379085..379090,
379097..379102,379106..379108))
/locus_tag="CDBI1_01635"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:73303"
gene 379789..380403
/locus_tag="CDBI1_01640"
/db_xref="GeneID:12216154"
CDS 379789..380403
/locus_tag="CDBI1_01640"
/note="COG1309 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_006197496.1"
/db_xref="GI:384359644"
/db_xref="GeneID:12216154"
/translation="MKKVSIDRRTIRTKKMIRSALAELIDEKGFNNISVTDLTQRADI
NRGTFYLHYVDKYDLLERIENEIIQEIEEETKHLDSSNMMEIDTSSEPLPFMVKLFEY
FRKNSVIIKSILGPKGDPTFERKIKKFIETNLFEKQKLINFNIDEAIISEEYFIQYIL
SADLGVIQYWLEKNMKESPEEMALILARMSLLGPLRAVGIRKDS"
misc_feature 379837..379968
/locus_tag="CDBI1_01640"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
misc_feature 380047..380304
/locus_tag="CDBI1_01640"
/note="Transcriptional regulator C-terminal region;
Region: TetR_C_8; pfam14278"
/db_xref="CDD:206446"
misc_feature complement(380994..381441)
/note="potential frameshift: common BLAST hit:
gi|170754594|ref|YP_001780490.1| acetyltransferase"
gene 382139..383050
/locus_tag="CDBI1_01655"
/db_xref="GeneID:12216155"
CDS 382139..383050
/locus_tag="CDBI1_01655"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197497.1"
/db_xref="GI:384359645"
/db_xref="GeneID:12216155"
/translation="MHYKINELENKYNLYNKVVQKGVFMFGYVKINKMDLTFREYDYY
KAYYCGLCKYLKRNHGEISRFSLNYDITFLIVLLTAVYNPESISTEEVCIVNPFKKKK
VITNDITEYAASMNILLTYYKLEDNLMDDKRIKDKLAYYIYKNKLKLAYEKYPEKAEY
IKQQLNELNKLEKDKNINIDEVSSIFGNIMGEVFVYKKDENERNLRMIGFNIGKYIYL
LDAYEDLDEDFKKGRYNPFIEYIDKNDELKEKVKKIIVTSLGFLARGIDNLNLNKNVG
IIENIIYSGVYLRYINILESRGGKNVQ"
gene 383040..383483
/locus_tag="CDBI1_01660"
/db_xref="GeneID:12216156"
CDS 383040..383483
/locus_tag="CDBI1_01660"
/note="COG0457 FOG: TPR repeat"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197498.1"
/db_xref="GI:384359646"
/db_xref="GeneID:12216156"
/translation="MYSNTYNNENFMRARAFIENSEFKKAYDFLKTLTDKCAEWYYLT
GFSAMNIGYYEEGEDFLKRAKFMEPENSEYSDALRSYTQYRNDYSNRADNYNRRRRND
LDGCCCCCCDDCCCCLGDDCCENCAKLWCLDSCCECFGGDLITCC"
misc_feature 383070..383255
/locus_tag="CDBI1_01660"
/note="Tetratricopeptide repeat; Region: TPR_16;
pfam13432"
/db_xref="CDD:205610"
gene 383494..383985
/locus_tag="CDBI1_01665"
/db_xref="GeneID:12216157"
CDS 383494..383985
/locus_tag="CDBI1_01665"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197499.1"
/db_xref="GI:384359647"
/db_xref="GeneID:12216157"
/translation="MSIKVAYGGVLLALNVILLTLTNIIPVNTLFIMGLASLLVSIVI
MEWGFKSGIAFYIGSIVLGFIVMASKSQWIVYSLTFGIYGIVKYLIEKDRSIYIEYFM
KLVFANIMILILYFLLRTIVYIPINIFIIGSFEIAFIVYDYVYSSFIGYYNNRLRKML
FKK"
gene 383989..384171
/locus_tag="CDBI1_01670"
/db_xref="GeneID:12216238"
CDS 383989..384171
/locus_tag="CDBI1_01670"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197500.1"
/db_xref="GI:384359648"
/db_xref="GeneID:12216238"
/translation="MIFIFNFNEIVVWISVNDISEYTLKHKAKFNIFLVQHIKALIFS
QSFYMLDINIRYNISF"
gene complement(384187..384915)
/locus_tag="CDBI1_01675"
/db_xref="GeneID:12216239"
CDS complement(384187..384915)
/locus_tag="CDBI1_01675"
/note="COG0560 Phosphoserine phosphatase"
/codon_start=1
/transl_table=11
/product="phosphoserine phosphatase"
/protein_id="YP_006197501.1"
/db_xref="GI:384359649"
/db_xref="GeneID:12216239"
/translation="MKNIAAFFDIDGTLYRDSLMVEHFKKLIKYDIIDQKNWYKHARD
TFMDWDKRQGNYDDYLLEICDLYVDSLKGLDKTCINFTSDQVIKLKADRVYKYTRSRI
EWHLNQGHIVIFISGSPGFLVEKMAKKYNVTDFLGSDYVFENNIFTGTVIPMWDSISK
NNAINDFVVKYDLDLSNSYAYGDTNGDINMLKRVGNPIAINPTKELLSQISLDEEISK
NVEIIVERKDIIYSLSTDVNIVDI"
misc_feature complement(384286..384915)
/locus_tag="CDBI1_01675"
/note="Phosphoserine phosphatase [Amino acid transport and
metabolism]; Region: SerB; COG0560"
/db_xref="CDD:30906"
misc_feature complement(384298..384903)
/locus_tag="CDBI1_01675"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:214172"
gene 385040..386128
/locus_tag="CDBI1_01680"
/db_xref="GeneID:12216240"
CDS 385040..386128
/locus_tag="CDBI1_01680"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197502.1"
/db_xref="GI:384359650"
/db_xref="GeneID:12216240"
/translation="MNFNFAKATNSRLMGSLGLIINWIDDENNHFCQYFLLDAEGLGL
ADYVSLNNPTQEEAYMEEERLMGGFGSDRVELTKDESLFLVSYFGNKNLYYDKLLPGD
KCEYIDIIKNYKTDLIIEKLYNKICKRVDEEVEFINYMTMRFIAWDRESLKYFSGSDE
IANMHITNINGTLLKNVVSDKGQGRYISEALYEDNDGYYICKIAFCISKCYETGFRIN
SLLVTDKELMYDFEVFDEISKSEFVSVYSVNSPEEFAGVFYRENPFLLKSNMNEGIFF
TRFNFNNDHVKENVYIINNDMKAIYYLMGNKFFIGTYNENDCNYINEISQSNYSDYIK
FEEKFFFEQNALYDFAESGSLDFDDFLE"
gene complement(386566..387414)
/locus_tag="CDBI1_01685"
/db_xref="GeneID:12216241"
CDS complement(386566..387414)
/locus_tag="CDBI1_01685"
/codon_start=1
/transl_table=11
/product="spore coat assembly asparagine-rich protein"
/protein_id="YP_006197503.1"
/db_xref="GI:384359651"
/db_xref="GeneID:12216241"
/translation="MSNKKKKDLDTSYMPYLDPANYADYITNEEIPQDELRNDPQISN
GYTKIPNNQNINNLYPNNVNHYPKSSNSPNNLPNTNNTSGNMNYNTSATNNMPNNMNN
NTGMPNNMSNNMNSNMGMPNNMPNNMNSNMGMPNNMSNNMNSNMGMPNNMPNNMNSNM
GMPNNMPNNMNSNMGMPNNMPNNMNSNMGMPNNVPNNMNSNMGYNMNNTMGIPNFSCN
QNMPPNVLMMIPGVICHNTMQGMPVVMPSTMPPNIYPTPYGSSNMSIQGIPQATNIEE
FDEEEM"
gene 387613..387978
/locus_tag="CDBI1_01690"
/db_xref="GeneID:12216242"
CDS 387613..387978
/locus_tag="CDBI1_01690"
/note="COG0640 Predicted transcriptional regulators"
/codon_start=1
/transl_table=11
/product="ArsR family transcriptional regulator"
/protein_id="YP_006197504.1"
/db_xref="GI:384359652"
/db_xref="GeneID:12216242"
/translation="MREEINDCNCNIVHEEIVTEAKSTMPDEEMLYDLAELFKVFGDT
TRVKILYALFANEMCVCDIASLLNMTHSAISHQLRVLKQARLVKFRREGKTVYYSLDD
SHISQIFDCGLNHIRETYK"
misc_feature 387724..387918
/locus_tag="CDBI1_01690"
/note="Arsenical Resistance Operon Repressor and similar
prokaryotic, metal regulated homodimeric repressors. ARSR
subfamily of helix-turn-helix bacterial transcription
regulatory proteins (winged helix topology). Includes
several proteins that appear to...; Region: HTH_ARSR;
cd00090"
/db_xref="CDD:28974"
misc_feature order(387724..387729,387733..387735,387742..387744,
387751..387756,387763..387768,387775..387777,
387865..387867)
/locus_tag="CDBI1_01690"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:28974"
misc_feature order(387727..387732,387742..387750,387787..387795,
387820..387831,387835..387840,387847..387852,
387856..387861,387877..387885,387898..387906)
/locus_tag="CDBI1_01690"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28974"
misc_feature order(387787..387789,387796..387798)
/locus_tag="CDBI1_01690"
/note="putative Zn2+ binding site [ion binding]; other
site"
/db_xref="CDD:28974"
gene 388001..390388
/locus_tag="CDBI1_01695"
/db_xref="GeneID:12216243"
CDS 388001..390388
/locus_tag="CDBI1_01695"
/note="COG2217 Cation transport ATPase"
/codon_start=1
/transl_table=11
/product="heavy-metal-transporting ATPase"
/protein_id="YP_006197505.1"
/db_xref="GI:384359653"
/db_xref="GeneID:12216243"
/translation="MEANNLIKKEFILGGLNCAHCAEEINNKVSKLQEVKSSNLNFIN
KKLIVNIKESFNEDTTIEKIIDIIDSTEPGLDIQISSKENASSKTSIKKELILGGLNC
AHCAEEINNKVSKLKEVESSNLNFVNKKLTVNISNNFKEDDVINKIKEIINSTEPGLD
IQVGSTDKVKGRTTEKSGAVNDTNKKELVPLIIGALVYIFGIYQTATGYESQFSNIVF
IVAYVIVGGDVLLRAIRNISKGRVFDENFLMALATVGALTIGESSEAVGVMLFYKVGE
YLQGVAVGKSRKSITSLMQIRPDYANLKFNSEVKVVSPEEVNVGDIIVVKPGEKVPLD
GVVVDGVSMLDTSALTGESVLREVEKGDEILSGVINKNALLSIEVTKSFGESTVSKIL
DLVENSSIKKSKTENFISKFSRYYTPIVVIAALLIAFVPPLVISGEVFSDWLYRGLIF
LVVSCPCALVLSIPLSFFSGIGFASKNGILIKGSNYLEALRSVDTVVFDKTGTLTKGV
FNVTKLNPEGISEEELLEYAAIAEVNSNHPIAKSILSYYNKKIDLDTIDSYEEIAAYG
IRVKHNGNFILAGNEKLMKKENISYSSAKEVGTVVYIAVDKVYRGYIVISDEVKEDSK
NAIRSLKAIGVKEVVMLTGDNEKVAKNIAQELELDTVYSNLLPNEKVDRLEDLYEGRT
EKEKIAFVGDGINDAPVLARADVGIAMGGLGSDAAIEAADVVLMTDEPSKISKAIEIA
NKTNKIVWQNIIFALGVKIIVMILGAGGVATMWEAIFADVGVALIAVVNAMRAMR"
misc_feature 388028..>388147
/locus_tag="CDBI1_01695"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cl00207"
/db_xref="CDD:206901"
misc_feature order(388046..388054,388061..388063)
/locus_tag="CDBI1_01695"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature 388274..390385
/locus_tag="CDBI1_01695"
/note="Cation transport ATPase [Inorganic ion transport
and metabolism]; Region: ZntA; COG2217"
/db_xref="CDD:32399"
misc_feature 388280..388450
/locus_tag="CDBI1_01695"
/note="Heavy-metal-associated domain (HMA) is a conserved
domain of approximately 30 amino acid residues found in a
number of proteins that transport or detoxify heavy
metals, for example, the CPx-type heavy metal ATPases and
copper chaperones. HMA domain...; Region: HMA; cd00371"
/db_xref="CDD:29471"
misc_feature order(388298..388306,388313..388315)
/locus_tag="CDBI1_01695"
/note="metal-binding site [ion binding]"
/db_xref="CDD:29471"
misc_feature 388802..389467
/locus_tag="CDBI1_01695"
/note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
/db_xref="CDD:201018"
misc_feature 389654..390100
/locus_tag="CDBI1_01695"
/note="haloacid dehalogenase-like hydrolase; Region: HAD;
pfam12710"
/db_xref="CDD:205034"
gene 390970..392482
/locus_tag="CDBI1_r18400"
/db_xref="GeneID:12216244"
rRNA 390970..392482
/locus_tag="CDBI1_r18400"
/product="16S ribosomal RNA"
/db_xref="GeneID:12216244"
misc_feature 392722..395543
/note="potential RNA of insufficient length (23S ribosomal
RNA)"
gene 395720..395836
/locus_tag="CDBI1_r18378"
/db_xref="GeneID:12216245"
rRNA 395720..395836
/locus_tag="CDBI1_r18378"
/product="5S ribosomal RNA"
/db_xref="GeneID:12216245"
gene 396014..396622
/locus_tag="CDBI1_01700"
/db_xref="GeneID:12216246"
CDS 396014..396622
/locus_tag="CDBI1_01700"
/note="COG0586 Uncharacterized membrane-associated
protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197506.1"
/db_xref="GI:384359654"
/db_xref="GeneID:12216246"
/translation="MSVINSFILQYGLISVFVLIMIEYACFPLPSEVVLPLCGAIAAR
NHFGFLTILILSIIAGILGSIFCYTVGNWGGKSIINKIIEICPKAKKGIFASQDYFNK
YSSISVCVCRLIPLCRTYISFIAGIAGQNIITFVISSIVGITIWNTSLISIGYIFSES
WVRIMSHYNDYKFLVLIIPISIIFIGFVIKSFIHKKHHKIRL"
misc_feature 396044..396526
/locus_tag="CDBI1_01700"
/note="Uncharacterized membrane-associated protein
[Function unknown]; Region: DedA; COG0586"
/db_xref="CDD:30931"
misc_feature 396098..396478
/locus_tag="CDBI1_01700"
/note="SNARE associated Golgi protein; Region:
SNARE_assoc; pfam09335"
/db_xref="CDD:204201"
gene complement(397163..397936)
/locus_tag="CDBI1_01705"
/db_xref="GeneID:12216247"
CDS complement(397163..397936)
/locus_tag="CDBI1_01705"
/note="'COG1277 ABC-type transport system involved in
multi-copper enzyme maturation, permease component'"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_006197507.1"
/db_xref="GI:384359655"
/db_xref="GeneID:12216247"
/translation="MWKLLWAECQKIRRSKIVWITFFASIMIAVIVFAGGQDVYNDPD
LHYGLKSVYDGSRYIDNAGWYMDAVQPWSTFFVLPAVIALLGSYIICREEEEDTIKSL
RLIPINETKLTIAKMIITFIFSILLYLLLFTITFLTESVLHFSDLSTKLVLSCMKEYF
LDGIGVFFAISPIIALVSRMKKGYWLALVFTEVYSIAGLFAGMSNVLQTFFPIAAIFN
ISGYYITTGEKIMGSIISLLLCACLSAFILKGLKHNEKN"
misc_feature complement(<397586..397933)
/locus_tag="CDBI1_01705"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:213123"
misc_feature complement(397262..397918)
/locus_tag="CDBI1_01705"
/note="ABC-2 family transporter protein; Region:
ABC2_membrane_4; pfam12730"
/db_xref="CDD:205048"
gene complement(397947..398684)
/locus_tag="CDBI1_01710"
/db_xref="GeneID:12216248"
CDS complement(397947..398684)
/locus_tag="CDBI1_01710"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_006197508.1"
/db_xref="GI:384359656"
/db_xref="GeneID:12216248"
/translation="MLKLIQTEFLKLRRRKLIWLMLLSALIMPFFALLYFNYFGKTGV
EPTKFYKWSAFGYTLWIILPVVLGIFCTMLIHEENQYDMLKQLWIVPISKMGYFFSKF
FVVLIYSICFMLITAVASVLFSVLSGYVVFSWASILYLLKKCLEIGVITAFVMLPILA
IATSQKGYILPICITLVYAFSGFVIMTINMYLHPLSSMGVIIMRNKDIPGLIFSQEIN
VPLAFLCICIWSIVSVLFASIALGRRK"
misc_feature complement(<398295..398678)
/locus_tag="CDBI1_01710"
/note="ABC-2 type transporter; Region: ABC2_membrane;
cl11417"
/db_xref="CDD:214176"
misc_feature complement(397980..398663)
/locus_tag="CDBI1_01710"
/note="ABC-2 family transporter protein; Region:
ABC2_membrane_4; pfam12730"
/db_xref="CDD:205048"
gene complement(398677..399600)
/locus_tag="CDBI1_01715"
/db_xref="GeneID:12216249"
CDS complement(398677..399600)
/locus_tag="CDBI1_01715"
/note="'COG1131 ABC-type multidrug transport system,
ATPase component'"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_006197509.1"
/db_xref="GI:384359657"
/db_xref="GeneID:12216249"
/translation="MNDFVIETKQLTKIYGNQTVVDKVNLHVKKGRIYGLLGRNGAGK
TTIMKMILGLTSITYGEVDVFGENIKGCEKRVYPRIGAIIETPGFYPNLTGTENLEIF
AKLRGTAAPNSVKRALEIVGLPYKNKKLFSKYSLGMKQRLGIANAILHDPELLVLDEP
TNGLDPIGIAEMRKFIRDLSVEHGKTILISSHILSEISLLADDIGIIDHGVLLEESSM
SELEKKNSKYILLQVSDIPKTSLILERQFNTKDYSVQDDHTLRLYNTTLDMGEINKAL
VMQNVTVISSQLCNDTLEDYFKKITGGEGIA"
misc_feature complement(398692..399588)
/locus_tag="CDBI1_01715"
/note="ABC-type multidrug transport system, ATPase
component [Defense mechanisms]; Region: CcmA; COG1131"
/db_xref="CDD:31326"
misc_feature complement(398971..399585)
/locus_tag="CDBI1_01715"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(399466..399489)
/locus_tag="CDBI1_01715"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(399025..399027,399124..399129,
399346..399348,399463..399471,399475..399480))
/locus_tag="CDBI1_01715"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(399346..399357)
/locus_tag="CDBI1_01715"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(399172..399201)
/locus_tag="CDBI1_01715"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(399124..399141)
/locus_tag="CDBI1_01715"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(399106..399117)
/locus_tag="CDBI1_01715"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(399019..399039)
/locus_tag="CDBI1_01715"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene complement(399757..400680)
/locus_tag="CDBI1_01720"
/db_xref="GeneID:12216250"
CDS complement(399757..400680)
/locus_tag="CDBI1_01720"
/note="COG0642 Signal transduction histidine kinase"
/codon_start=1
/transl_table=11
/product="two-component sensor histidine kinase"
/protein_id="YP_006197510.1"
/db_xref="GI:384359658"
/db_xref="GeneID:12216250"
/translation="MNTSVYLLLILALSLIIIAYLVSVLLRVRIQLTLIKDALEDIKN
GNLNRRILTDENDITKQICYDINEIAINSQFQLIQQKQSEQAYKQLMTSLSHDVKTPL
ASLVGYLEAVESKIVVGEEKDEYIHVASNKAHYLKNFVENLFEWVKLDSKEQVFHFDI
FDLNELSRNIISDWIPVLESSHFEYEFDIPEIEYFLRIDANAYTRIINNLLQNIITHS
SGNKMTLRIFENKEQAQIIITDNGKGISSDNLPHIFERLYQCDHSRASKGNGLGLAIA
KELINAHKGNITANSTPGMGTEFTILLPKAL"
misc_feature complement(399763..400602)
/locus_tag="CDBI1_01720"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(400237..400431)
/locus_tag="CDBI1_01720"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(400252..400254,400264..400266,
400273..400275,400285..400287,400294..400296,
400306..400308,400357..400359,400366..400368,
400378..400380,400387..400389,400399..400401,
400411..400413))
/locus_tag="CDBI1_01720"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(400393..400395)
/locus_tag="CDBI1_01720"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(399772..400068)
/locus_tag="CDBI1_01720"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(399784..399786,399790..399795,
399808..399810,399814..399816,399862..399873,
399946..399951,399955..399957,399961..399963,
399967..399969,400033..400035,400042..400044,
400054..400056))
/locus_tag="CDBI1_01720"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(400042..400044)
/locus_tag="CDBI1_01720"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(399865..399867,399871..399873,
399949..399951,399955..399957))
/locus_tag="CDBI1_01720"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(400682..401383)
/locus_tag="CDBI1_01725"
/db_xref="GeneID:12216251"
CDS complement(400682..401383)
/locus_tag="CDBI1_01725"
/note="COG0745 Response regulators consisting of a
CheY-like receiver domain and a winged-helix DNA-binding
domain"
/codon_start=1
/transl_table=11
/product="two-component response regulator"
/protein_id="YP_006197511.1"
/db_xref="GI:384359659"
/db_xref="GeneID:12216251"
/translation="MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKN
RHTLSLVILDIMMPDIDGFQVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLT
KPFSINELMARVNSLIRRYTMLNPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTS
KEFDLLAFLASNKGRVFTKKQIYTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFY
ILTVRGVGYRFNKEA"
misc_feature complement(400685..401374)
/locus_tag="CDBI1_01725"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature complement(401030..401371)
/locus_tag="CDBI1_01725"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(401072..401077,401084..401086,
401141..401143,401198..401200,401222..401224,
401357..401362))
/locus_tag="CDBI1_01725"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(401222..401224)
/locus_tag="CDBI1_01725"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(401198..401206,401210..401215))
/locus_tag="CDBI1_01725"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(401069..401077)
/locus_tag="CDBI1_01725"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(400697..400981)
/locus_tag="CDBI1_01725"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature complement(order(400706..400708,400721..400723,
400757..400762,400784..400786,400793..400795,
400847..400852,400907..400909))
/locus_tag="CDBI1_01725"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene complement(401376..401564)
/locus_tag="CDBI1_01730"
/db_xref="GeneID:12216252"
CDS complement(401376..401564)
/locus_tag="CDBI1_01730"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197512.1"
/db_xref="GI:384359660"
/db_xref="GeneID:12216252"
/translation="MEYMSCPEVAKKWGISERRVQKLCEESRIPGVSKLGYMWLIPKN
AEKPVDGRAKRRKEVQYE"
misc_feature complement(<401436..401558)
/locus_tag="CDBI1_01730"
/note="Helix-turn-helix domain; Region: HTH_17; pfam12728"
/db_xref="CDD:205047"
gene 401793..402722
/locus_tag="CDBI1_01735"
/db_xref="GeneID:12216253"
CDS 401793..402722
/locus_tag="CDBI1_01735"
/note="COG0714 MoxR-like ATPases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197513.1"
/db_xref="GI:384359661"
/db_xref="GeneID:12216253"
/translation="MDIIDNLRVQGVDEKLIEDVLYFRNYYGLEKDLEYRVTKSKTYF
YGKDILSMCIAAILEEENILLSGPKATGKNLLADNLGEIFNRPQWNTSFHINTDSSTL
IGTDTFIDNEVKLRRGSVYECAINGGFGVFDEINMAKNDAIVVVHSALDYRRIIDVPG
YERVNLHPATRFIGTMNYEYAGTKELNEALVSRFMVIDIPPIEEDKLMMILKNEFSDA
DEEKLIHFAGIFLDLQLKSQNGEISSKAIDLRGLMASLKTIRRGLKPTLAINMGLTGK
TFDVYEKEMVGDVIKTRIPNKWESIDVFPISHI"
misc_feature 401877..>402464
/locus_tag="CDBI1_01735"
/note="MoxR-like ATPases [General function prediction
only]; Region: COG0714"
/db_xref="CDD:31058"
misc_feature 401976..402374
/locus_tag="CDBI1_01735"
/note="AAA domain (dynein-related subfamily); Region:
AAA_5; pfam07728"
/db_xref="CDD:203741"
gene 402736..404508
/locus_tag="CDBI1_01740"
/db_xref="GeneID:12216254"
CDS 402736..404508
/locus_tag="CDBI1_01740"
/note="COG4548 Nitric oxide reductase activation protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197514.1"
/db_xref="GI:384359662"
/db_xref="GeneID:12216254"
/translation="MKWIYDDYEFENRANNLSWTIAGDYNESIDISEKDYSSKEIGLY
FAIIAGARRKYVDWDIVKKYLTNRIRKGYNKDIILGLIQVILNTIVEEKVIKDRPGIE
DIRRNAYKDIVSRFTKIHNDNIMDKIKYTFVLYNMDKHPALDSMTRRIVNDIRNIDTN
QDMMEILKALDVIYLTYFEYILNGEENSLIDENNVESVEVNFDTFADFMYEELYSDEE
ENIIESDIDSISSSMLVEGVGDFDDSKCSNSADRVIYVDEDTANKIYSKIEHYYGKTY
LSKGEIKKIETQNCRNVHEGCRIHFTDGVLRSECNNVFQLKYVTRQKENNLGKFREHA
RMYRQQIKRLKESLSRILIEENAKSRVYSDCGTILANRAWRVGRSNNNKIFYKDIENE
KGKYVIDILLDASGSQSRNQGNVAIQAYIIANALTEVGIPNRVMGFSSFLDYTILKRF
KDYDDSIKNSENIFEYFCAGNNRDGLAIKSICSGLINRDEENKILIVLSDGRPNDVKI
GKSSERTLRGEKAYRGIVGLRDTANEVRKARKQNILVLGVFTGKESELEAERLIYGND
FIYSRDITRFSDVVSMYLKKIIRN"
misc_feature 403921..404394
/locus_tag="CDBI1_01740"
/note="Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is made
up of approximately 200 amino acid residues folded into a
classic a/b para-rossmann type of...; Region: vWFA;
cl00057"
/db_xref="CDD:213414"
misc_feature order(403942..403944,404149..404151,404233..404235)
/locus_tag="CDBI1_01740"
/note="metal ion-dependent adhesion site (MIDAS); other
site"
/db_xref="CDD:29222"
gene 405021..405773
/locus_tag="CDBI1_01745"
/db_xref="GeneID:12216255"
CDS 405021..405773
/locus_tag="CDBI1_01745"
/note="'COG0310 ABC-type Co2+ transport system, permease
component'"
/codon_start=1
/transl_table=11
/product="cobalt transport protein"
/protein_id="YP_006197515.1"
/db_xref="GI:384359663"
/db_xref="GeneID:12216255"
/translation="MKQNIKLGVIAALMLIVLTPVTSNAMHIMEGYLPVKWSIAWGVI
FIPFFLVGLKSIGKIVKQDPKKKVLLALCGAFVFVLSALKIPSVTGSCSHPTGVGLGA
IMFGPSVMFVLGTIVLIFQALLLAHGGITTLGANAFSMAIIGPIISFLIFKALKKKDG
NNAMPVFLAAAIGDLATYTVTSIQLALAFPDPSGGVMASAIKFLGIFFMTQIPIAIAE
GILTVIVYNLITENGEKSILENNDKGVKANEC"
misc_feature 405096..405713
/locus_tag="CDBI1_01745"
/note="cobalt transport protein CbiM; Validated; Region:
PRK08319"
/db_xref="CDD:181384"
misc_feature 405213..405707
/locus_tag="CDBI1_01745"
/note="Protein of unknown function (DUF3816); Region:
DUF3816; pfam12822"
/db_xref="CDD:205090"
gene 405763..406047
/locus_tag="CDBI1_01750"
/db_xref="GeneID:12216256"
CDS 405763..406047
/locus_tag="CDBI1_01750"
/note="'COG1930 ABC-type cobalt transport system,
periplasmic component'"
/codon_start=1
/transl_table=11
/product="cobalt transport protein"
/protein_id="YP_006197516.1"
/db_xref="GI:384359664"
/db_xref="GeneID:12216256"
/translation="MSAKTKTKTNILLLLLVVALIIFPLLVNSGAEYGGADGQAESEI
TKINPDYEPWFSSPYEPPSGEIESLLFSAQAALGAGVIGYILGVQKGKRS"
misc_feature <405844..406041
/locus_tag="CDBI1_01750"
/note="cobalt transport protein CbiN; Provisional; Region:
PRK02898"
/db_xref="CDD:179494"
gene 406050..406748
/locus_tag="CDBI1_01755"
/db_xref="GeneID:12216257"
CDS 406050..406748
/locus_tag="CDBI1_01755"
/note="'COG0619 ABC-type cobalt transport system, permease
component CbiQ and related transporters'"
/codon_start=1
/transl_table=11
/product="cobalt transport protein"
/protein_id="YP_006197517.1"
/db_xref="GI:384359665"
/db_xref="GeneID:12216257"
/translation="MLIIDKYAYTNRLSKVNPNKKVAIGVIFLIASMVIKNIFVLSGI
MILMSILVVCVAGIDLKNYLKLLRIPMYFLFLSIGITLVNISFNKADLLYSFEIFSFN
VGISKASIDMSIHVLFRAMSCLTCVYFCILTTPFNQLIFFFKKMHLPDTFVELSMLIY
RFIFIFLEEFSEIYKSQELRFGYINLKTSYKSLGILGSMLYKRLMTRYDDMCISLDIK
LYDGKFHIVGDNDV"
misc_feature 406050..406727
/locus_tag="CDBI1_01755"
/note="Cobalt transport protein; Region: CbiQ; cl00463"
/db_xref="CDD:186013"
gene 406741..407559
/locus_tag="CDBI1_01760"
/db_xref="GeneID:12216258"
CDS 406741..407559
/locus_tag="CDBI1_01760"
/note="'COG1122 ABC-type cobalt transport system, ATPase
component'"
/codon_start=1
/transl_table=11
/product="cobalt transporter ATP-binding subunit"
/protein_id="YP_006197518.1"
/db_xref="GI:384359666"
/db_xref="GeneID:12216258"
/translation="MFKINNLTYQYEKNTNALLNINMDFSKGNVIGIIGSNGSGKSTL
FMNLMGILKPTSGEILFKEEKLKYDKRSLYNLRKNVGIVFQDPEKQIFYSKVYDDIAF
AMRNIGIDEKIIKERINKALVAVNGIDFIDRPVHFLSYGQKKRVAIASVIAMENEIIL
LDEPTAGLDPVSTRSIVDIIKGLNKDNIKIVISSHDMNLMYEICDYIYVLDKGILIDE
GKAENVFVNENNIIQAGLESPWLVKVHRNMNLPLFKKEEDLYKYWKERELNTNK"
misc_feature 406741..407544
/locus_tag="CDBI1_01760"
/note="cobalt transporter ATP-binding subunit;
Provisional; Region: cbiO; PRK13638"
/db_xref="CDD:184198"
misc_feature 406747..407379
/locus_tag="CDBI1_01760"
/note="First domain of the ATP-binding cassette component
of cobalt transport system; Region:
ABC_cobalt_CbiO_domain1; cd03225"
/db_xref="CDD:213192"
misc_feature 406843..406866
/locus_tag="CDBI1_01760"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213192"
misc_feature order(406852..406857,406861..406869,406993..406995,
407224..407229,407323..407325)
/locus_tag="CDBI1_01760"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213192"
misc_feature 406984..406995
/locus_tag="CDBI1_01760"
/note="Q-loop/lid; other site"
/db_xref="CDD:213192"
misc_feature 407152..407181
/locus_tag="CDBI1_01760"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213192"
misc_feature 407212..407229
/locus_tag="CDBI1_01760"
/note="Walker B; other site"
/db_xref="CDD:213192"
misc_feature 407236..407247
/locus_tag="CDBI1_01760"
/note="D-loop; other site"
/db_xref="CDD:213192"
misc_feature 407311..407331
/locus_tag="CDBI1_01760"
/note="H-loop/switch region; other site"
/db_xref="CDD:213192"
gene 407814..410078
/locus_tag="CDBI1_01765"
/db_xref="GeneID:12216259"
CDS 407814..410078
/locus_tag="CDBI1_01765"
/note="COG0210 Superfamily I DNA and RNA helicases"
/codon_start=1
/transl_table=11
/product="ATP-dependent DNA helicase"
/protein_id="YP_006197519.1"
/db_xref="GI:384359667"
/db_xref="GeneID:12216259"
/translation="MNLDTLNPAQREAVEKTEGPVLILAGAGSGKTKVLTTRIAYLIE
DKGVQAPNILAITFTNKAANEMRERVEQNIGPETKDMWISTFHSCCVRILRKDINKIG
YNRSFVIYDSADQVTLVKDCLKELNLSDKVFEPKAVISAISGAKDKLYTPKQFKDINM
ADNRMVKIADIYALYQDRLKRNSALDFDDLILKTVELFKANDEVLAYYRSRFRYIMVD
EYQDTSKAQYELIKLLAREHQNICVVGDDDQSIYGWRGADIRNILEFEKDYDNVHVVK
LEQNYRSTQVILDAANKVISNNIERKRKKLWSEKKEGELIKIQLTGSEIEEADFIADS
IAQIARKENRPYKDFAVLYRANAQARPVEDALNRSQIPYNIYGGTKFYERKEIKDLLA
YLRVIQNPQDDISIKRIINVPRRGIGLRTIEKIEDRANLKQESIYSVLIDIETNSDIS
TKARASISGFVDIIGTLRTIKEVYPVSKLIEKVLDTTGYMDELVEIRNKNEKDLTGKG
EEAQDRIDNLREFISIALEFESSNDDTYENKDLETFLTSIALTSESNDEEDNDRVSLM
TIHTSKGLEFPVVFLTGMEEGLFPISRAIKSMSDSQIEEERRLCYVGITRAKEELYMS
LTEKRTLYGKTNVAIASRFMEELPEECIERLYKVKKELSYSKASYNMLDKYTKKYMST
ISKSKVADKVNATIKDSNKETNPDDIKLGSKVHHPKFGVGTVVSIIGTDVTIAFDQQG
IKKINKEYTTLNIL"
misc_feature 407820..410045
/locus_tag="CDBI1_01765"
/note="ATP-dependent DNA helicase PcrA; Region: pcrA;
TIGR01073"
/db_xref="CDD:162191"
misc_feature 407847..408077
/locus_tag="CDBI1_01765"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature <409509..409682
/locus_tag="CDBI1_01765"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene 410095..411393
/locus_tag="CDBI1_01770"
/db_xref="GeneID:12216260"
CDS 410095..411393
/locus_tag="CDBI1_01770"
/note="COG1362 Aspartyl aminopeptidase"
/codon_start=1
/transl_table=11
/product="putative aminopeptidase 2"
/protein_id="YP_006197520.1"
/db_xref="GI:384359668"
/db_xref="GeneID:12216260"
/translation="MDSINFAKNLIDFIYDSPSSFHAVESTKEILDKNGFEELVLNQR
WNLRVGGKYYVTKNLSAIVAFVVNSEDIERDGFRIIGSHSDSPTFSIKPNAEIEAEKS
YLKLNTECYGGAILSTWLDRPLGIAGRVVLKGDSILKPNERLIDFKKPICIIPNLAIH
LNRSINDGHSYNKQKDMLPLVGMLNDTLEKDNFLIKQIASNLDVNMEDIIDFDLFLYE
FEKGSLIGANDEFISIGRQDNLAMVHASLNALVNTKGQQGVNVMAVFDNEEVGSSTKQ
GADSNMLLNILERICISMGKDREGFFESIYSSFMISSDLAHAIHPNIPEKHDPTNKPI
MGKGPVIKINASQAYTSDGYSIAIYKNICREVNVEYQEFVNRSDERGGSTIGPISSTH
IDIPSVDVGSPILAMHSIRELGNVEDHYSIYKTFSKFFEI"
misc_feature 410113..411387
/locus_tag="CDBI1_01770"
/note="M18 Peptidase Aspartyl aminopeptidase; Region:
M18_DAP; cd05658"
/db_xref="CDD:193534"
misc_feature 410131..411384
/locus_tag="CDBI1_01770"
/note="Aminopeptidase I zinc metalloprotease (M18);
Region: Peptidase_M18; pfam02127"
/db_xref="CDD:202119"
misc_feature order(410341..410343,410806..410811,410896..410901,
411034..411039,411043..411045,411118..411120,
411139..411141,411238..411243,411313..411318)
/locus_tag="CDBI1_01770"
/note="active site"
/db_xref="CDD:193534"
misc_feature order(410341..410343,410806..410808,410896..410901,
411034..411036,411316..411318)
/locus_tag="CDBI1_01770"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:193534"
gene 411424..412176
/locus_tag="CDBI1_01775"
/db_xref="GeneID:12216261"
CDS 411424..412176
/locus_tag="CDBI1_01775"
/note="COG1752 Predicted esterase of the alpha-beta
hydrolase superfamily"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197521.1"
/db_xref="GI:384359669"
/db_xref="GeneID:12216261"
/translation="MKLGLCLEGGGAKGAYQAGVVKALYDGGINKFYSISGTSIGAIN
GYYLYTGNVDNLEKMWTNIKDIQNGNVKIVNNTVDNSPAIDNLRELDDSNIEEMNFYV
NYVEVDNKVVSEKIVDISKMPRNEAIISISYSGLLPSNPNATLGFKEQFVKDVQEGIY
DGFKLDGGLIRSALIEPLIGDNVDKIILISTKYNYELPEDIKKVYDEDKIIVVRPNTQ
FAPKDTLNFDDEFCKTIYQEGYEIGKNILDRL"
misc_feature 411436..412146
/locus_tag="CDBI1_01775"
/note="Hypothetical patatin similar to Z1214 protein of
Escherichia coli; Region: Pat_hypo_Ecoli_Z1214_like;
cd07209"
/db_xref="CDD:132848"
misc_feature order(411451..411456,411460..411462,411538..411540,
411919..411921)
/locus_tag="CDBI1_01775"
/note="active site"
/db_xref="CDD:132848"
misc_feature 411532..411546
/locus_tag="CDBI1_01775"
/note="nucleophile elbow; other site"
/db_xref="CDD:132848"
gene 412241..412765
/locus_tag="CDBI1_01780"
/db_xref="GeneID:12216262"
CDS 412241..412765
/locus_tag="CDBI1_01780"
/note="COG0652 Peptidyl-prolyl cis-trans isomerase
(rotamase) - cyclophilin family"
/codon_start=1
/transl_table=11
/product="peptidyl-prolyl cis-trans isomerase"
/protein_id="YP_006197522.1"
/db_xref="GI:384359670"
/db_xref="GeneID:12216262"
/translation="MENKNPIVTIEMENGKEIKIELYPNIAPNTVKNFVSLVNEGYYN
GIIFHRVIPGFMIQGGCPNGTGMGGPGHSIKGEFSGNGFTNNLKHERGVISMARTMAP
NSAGSQFFIMHKNSPHLDGQYAGFGRVIEGMDTVDEIASVRTDSADKPQTPQIMKSVT
VETFGIDYSDVEKN"
misc_feature 412265..412729
/locus_tag="CDBI1_01780"
/note="cyclophilin: cyclophilin-type peptidylprolyl cis-
trans isomerases. This family contains eukaryotic,
bacterial and archeal proteins which exhibit a
peptidylprolyl cis- trans isomerases activity (PPIase,
Rotamase) and in addition bind the...; Region:
cyclophilin; cd00317"
/db_xref="CDD:29390"
misc_feature 412280..412723
/locus_tag="CDBI1_01780"
/note="peptidyl-prolyl cis-trans isomerase B (rotamase B);
Provisional; Region: PRK10791"
/db_xref="CDD:182734"
misc_feature order(412388..412390,412394..412396,412403..412408,
412412..412414,412529..412534,412562..412564,
412568..412570,412592..412597,412607..412609)
/locus_tag="CDBI1_01780"
/note="active site"
/db_xref="CDD:29390"
gene 413443..413589
/locus_tag="CDBI1_01785"
/db_xref="GeneID:12216263"
CDS 413443..413589
/locus_tag="CDBI1_01785"
/codon_start=1
/transl_table=11
/product="exosporium glycoprotein"
/protein_id="YP_006197523.1"
/db_xref="GI:384359671"
/db_xref="GeneID:12216263"
/translation="MRKIILYLNDDTFISKKYPDKNFSNLDYCLIGSKCSNSFVKEKL
ITFF"
gene 413590..414183
/locus_tag="CDBI1_01790"
/db_xref="GeneID:12216264"
CDS 413590..414183
/locus_tag="CDBI1_01790"
/codon_start=1
/transl_table=11
/product="exosporium glycoprotein"
/protein_id="YP_006197524.1"
/db_xref="GI:384359672"
/db_xref="GeneID:12216264"
/translation="MRIPDILKDKSILKAELFIHIDSNKNHIFKEKVDIEIKRISEYY
NLRTITWNDRVSMENIRGYLPIGISDTSNYICLNITGTIKAWAMNKYPNYGLALSLNY
PYQIFEFTSSRDCNKPYILVTFEDRIIDNCYPKCECLPIRITGPMGPRGATGSIGPMG
ATGPTGATGNSSQPIANFLVNAPSPQTLNNGNAITGW"
gene 414352..414543
/locus_tag="CDBI1_01795"
/db_xref="GeneID:12216265"
CDS 414352..414543
/locus_tag="CDBI1_01795"
/codon_start=1
/transl_table=11
/product="exosporium glycoprotein"
/protein_id="YP_006197525.1"
/db_xref="GI:384359673"
/db_xref="GeneID:12216265"
/translation="MAGLTTEPGGGGVLSGYFAGFLFGGTTFTINNFSSTTVGIRNGQ
SAGTAATLTIFRIADTVMT"
gene complement(414778..416376)
/locus_tag="CDBI1_01800"
/db_xref="GeneID:12216266"
CDS complement(414778..416376)
/locus_tag="CDBI1_01800"
/EC_number="3.6.1.1"
/note="COG1227 Inorganic
pyrophosphatase/exopolyphosphatase"
/codon_start=1
/transl_table=11
/product="putative manganese-dependent inorganic
pyrophosphatase"
/protein_id="YP_006197526.1"
/db_xref="GI:384359674"
/db_xref="GeneID:12216266"
/translation="MSLLVFGHKNPDTDSICSAISLAHLKNKLGIKATAYALGDIRKE
AKYALDYFKVDAPEILDNVRIQVRDLNYDKVVPLTPTSSILEAYNLMDEKNVKTLPVT
YDDGTFAGIITMKEIAKNLLHQHFTTIHTSLSNICKNLNGTILVDCGEDIKGRVVTLS
FGMETLIETLKEGDIAIVGDRYDSIEYAIDTKVKLLILTNHTEISKDLLALAKINGVS
VVSVESDNYKTSNVINQCSFLDSIEATENLITFKEDDYMDEIKEIMLETNFRSYPILD
DDNKFLGLVSKGHLLNPSKKNVVLVDHNEYAQSADGIEQANIVEIIDHHKLGGISTDV
PMSFRVMPVGCNSTIIYQMYKENNVEIPYEIAGLLLSAILSDTLLFKSPTTTDMDKKA
CEELSKIAKVDMEKYAMDMFKCGTSLDEYTIEEIVNMDFKEFNMSGHRVGIGQVFTLD
IDSIFAKKDEFLSYINSTDYDKLILAVTDIIKEGSYLIYKAEDSLIANAFDVEGVQGT
FAPGVVSRKKQLVPNLTTAIKNFK"
misc_feature complement(414787..416376)
/locus_tag="CDBI1_01800"
/note="putative manganese-dependent inorganic
pyrophosphatase; Provisional; Region: PRK14869"
/db_xref="CDD:184871"
misc_feature complement(416017..416352)
/locus_tag="CDBI1_01800"
/note="This cd contains two tandem repeats of the
cystathionine beta-synthase (CBS pair) domains associated
with a DRTGG domain upstream. The function of the DRTGG
domain, named after its conserved residues, is unknown.
CBS is a small domain originally...; Region:
CBS_pair_DRTGG_assoc2; cd04597"
/db_xref="CDD:73097"
misc_feature complement(415669..415974)
/locus_tag="CDBI1_01800"
/note="DRTGG domain; Region: DRTGG; pfam07085"
/db_xref="CDD:203577"
misc_feature complement(415501..415647)
/locus_tag="CDBI1_01800"
/note="CBS domain; Region: CBS; pfam00571"
/db_xref="CDD:201313"
misc_feature complement(414793..415155)
/locus_tag="CDBI1_01800"
/note="DHHA2 domain; Region: DHHA2; pfam02833"
/db_xref="CDD:202421"
gene 417254..419896
/locus_tag="CDBI1_01805"
/db_xref="GeneID:12216267"
CDS 417254..419896
/locus_tag="CDBI1_01805"
/note="COG1012 NAD-dependent aldehyde dehydrogenases"
/codon_start=1
/transl_table=11
/product="bifunctional acetaldehyde-CoA/alcohol
dehydrogenase"
/protein_id="YP_006197527.1"
/db_xref="GI:384359675"
/db_xref="GeneID:12216267"
/translation="MEKKEKVVEKSNVEVCSPEIVNSVETLRMRLEEIRLAQKEFATF
TQEQVDKIFLAASTAANQQRIPLAKMAVEETGMGIVEDKVIKNHFASEYIYNAYKDTK
TCGVIEKDEAFGFTRIAEPVGVLSAVIPTTNPTSTAIFKSLIALKTRNGIIFSPHPRA
KNCTIEAARVVHDAAVKAGAPKGLIGWVDVPSIELTNVVMAEADLILATGGPGMVKSA
YSSGKPAVGVGPGNVPAIIDESADIKMAVSSILVSKSFDNGMICASEQAVIVPEKIYE
EVKKEFKYRGAHFLNKEETEKVGKVVIIDGSLNARIVGQPAHVIAKMADVEVPKTARI
IIGEVESVELNEPFAHEKLSPVLAMYKSKSFEDAVAKAEKLVADGGYGHTSSLYADSI
NHPDRVEKFVNAMKTCRVLVNTPSSQGGIGDLYNFKLAPSLTLGCGSWGGNSVSENVG
VKHLLNIKTVAERRENMLWFRAPEKVYFKKGCLGVAAREFKDVMDKKKAFIVTDSFLY
NNGYTKKLTDLLDEMGIKHTTFFDVAPDPTLACAREGAKAMADFQPDLIIAVGGGSAM
DAGKIMWVMYEHPEVDFQDLAMRFMDIRKRVYVFPKMGEKAYFAAIPTSAGTGSEVTP
FAVITDQDSGVKYPLADYELMPNMAIIDADMMMEMPPRLTAASGVDALTHALEAYVSM
LRTEPADGLALQAGKIIFEYLPRAYKNGKNDKEAREKMAMASTMAGMSFANAFLGICH
SLAHKLGAFHHVQHGVANALLINEVIKFNCAEAPNKMGAFSQYRYPDCIQRYAEFASF
AGIKGNTDQEKVDNLIKAIDELKARVGLPKTIKEAGVEESKFLETLDVMVEQAFDDQC
TGANPRYPLMSELKEIYLKVYYGK"
misc_feature 417305..419884
/locus_tag="CDBI1_01805"
/note="bifunctional acetaldehyde-CoA/alcohol
dehydrogenase; Provisional; Region: PRK13805"
/db_xref="CDD:184338"
misc_feature 417344..418642
/locus_tag="CDBI1_01805"
/note="Coenzyme A acylating aldehyde dehydrogenase (ACDH),
ALDH family 20-like; Region: ALDH_F20_ACDH; cd07122"
/db_xref="CDD:143440"
misc_feature 418037..418039
/locus_tag="CDBI1_01805"
/note="putative catalytic cysteine [active]"
/db_xref="CDD:143440"
misc_feature 418670..419875
/locus_tag="CDBI1_01805"
/note="C-terminal alcohol dehydrogenase domain of the
acetaldehyde dehydrogenase-alcohol dehydrogenase
bifunctional two-domain protein (AAD); Region: AAD_C;
cd08178"
/db_xref="CDD:173937"
misc_feature order(418763..418765,418937..418945,418952..418954,
418961..418963,419093..419098,419102..419104,
419159..419164,419216..419218,419240..419242,
419261..419263,419273..419275,419471..419473,
419483..419485,419513..419515)
/locus_tag="CDBI1_01805"
/note="putative active site [active]"
/db_xref="CDD:173937"
misc_feature order(419261..419263,419273..419275,419471..419473,
419513..419515)
/locus_tag="CDBI1_01805"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:173937"
gene complement(420256..420597)
/locus_tag="CDBI1_01810"
/db_xref="GeneID:12216268"
CDS complement(420256..420597)
/locus_tag="CDBI1_01810"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197528.1"
/db_xref="GI:384359676"
/db_xref="GeneID:12216268"
/translation="MLLILDNLNLNLDFDYRIIREENDDVDIFIDINYRSLDIDTDGS
NLFNSRIQFPFVRALILRINKNNQCMTIHLLRDIDLFSAFANFEVDYTDSIINIKNQN
EKVILNKSIKK"
gene complement(420624..421295)
/locus_tag="CDBI1_01815"
/db_xref="GeneID:12216269"
CDS complement(420624..421295)
/locus_tag="CDBI1_01815"
/note="'COG1136 ABC-type antimicrobial peptide transport
system, ATPase component'"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_006197529.1"
/db_xref="GI:384359677"
/db_xref="GeneID:12216269"
/translation="MPILEILNLGKIYGKKETAVHALKDANLKINKGEFVAIIGPSGS
GKSTFLHLVGGLERPSSGTIKVDGKDICCLSDKKLAKYRRQKVGFVFQQYNLIPVLNV
KENIELPLKLDNKKVDEEYIEDIINLLGLSERKNHLPNQLSGGQQQRVAIARALSAKP
SIILADEPTGNLDSKTTEEVMDLLKSSIKKYNQTLIIITHNENIARKADRIISIIDGE
LKLTL"
misc_feature complement(420639..421289)
/locus_tag="CDBI1_01815"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:31331"
misc_feature complement(420639..421286)
/locus_tag="CDBI1_01815"
/note="ATP-binding cassette domain of the transporters
involved in export of lipoprotein and macrolide, and cell
division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255"
/db_xref="CDD:213222"
misc_feature complement(421155..421178)
/locus_tag="CDBI1_01815"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213222"
misc_feature complement(order(420696..420698,420795..420800,
421020..421022,421152..421160,421164..421169))
/locus_tag="CDBI1_01815"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213222"
misc_feature complement(421020..421031)
/locus_tag="CDBI1_01815"
/note="Q-loop/lid; other site"
/db_xref="CDD:213222"
misc_feature complement(420843..420872)
/locus_tag="CDBI1_01815"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213222"
misc_feature complement(420795..420812)
/locus_tag="CDBI1_01815"
/note="Walker B; other site"
/db_xref="CDD:213222"
misc_feature complement(420777..420788)
/locus_tag="CDBI1_01815"
/note="D-loop; other site"
/db_xref="CDD:213222"
misc_feature complement(420690..420710)
/locus_tag="CDBI1_01815"
/note="H-loop/switch region; other site"
/db_xref="CDD:213222"
gene complement(421307..423892)
/locus_tag="CDBI1_01820"
/db_xref="GeneID:12216270"
CDS complement(421307..423892)
/locus_tag="CDBI1_01820"
/note="'COG0577 ABC-type antimicrobial peptide transport
system, permease component'"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_006197530.1"
/db_xref="GI:384359678"
/db_xref="GeneID:12216270"
/translation="MKDNLKIALRYIISYKARSLAIALSIILATSLIVGIGTLSRSAQ
QAEVDKLKRETGSDHVYFKDINKNQLEYIKSRKDIKNLGITSHYGYTDPNERLAINLE
YANKNYLTNQSKLIKGHLPKASNEVVVEKWILNSLGLKPEINQNITFKLYQKEKPETF
KVVGILEDRPIEKNKGTCEIFLNLNESKLDKFSYAYIEFNNGIDINTSIDNIVKNTML
DENSVGKNKMLIESTRENGTLDNSSKYTAITMSLFSGIVIYSIYVISIYQRIQEYGIL
RAIGSTNFKIFKFMFYELFILALIAIPIGICTGIGGAQIFNRTAGNIQFEGNVTVTPF
VIPDKIILLSIGSIILTILIISFFTYLKIRRISPIDSIRKTFGTDKNINKVNSLISKL
TLNISVTKSISAKNIFRNKKGFIIIILSMSLGGIMIIKENYKYSFSDIQNKNGQEETY
MNADFILTNFFLKLNQSNKADSFKDIKGLNDNQIDKIKNINGIDKVKTASILDTRIEV
DKLNGLDYYNIINSTPYYKDFPLFIKNKNTGKYTMKQKLRGYNDEMINSLEKYLVSGS
INLERMKKENLAILYVPQVSKTNKYKLSYTPGTETPAVDIKVGDTIKVKYPKGEIDQD
LYIKLKDNYEYLEYEFKVGAIVSYPFADNYLYSGDQGIDVITSNDYLKKLTGVDKYNV
VYVDINKNANVKKINTLLGEIGSESPGTTTANMLMEKENFDKMTARALTYAYGIVAVM
FIISVFNIINNISYNLTSRTSEFGMLRAIGISERGFKNMILYEGILYGILSSVITIVV
GLIIQFRMYYTYNFVSYGLGFSIDYKIYILVVLANIIVGILATYIPLRKINKISIVEA
INITE"
misc_feature complement(423251..423871)
/locus_tag="CDBI1_01820"
/note="MacB-like periplasmic core domain; Region:
MacB_PCD; pfam12704"
/db_xref="CDD:205030"
misc_feature complement(<422885..423091)
/locus_tag="CDBI1_01820"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:202350"
misc_feature complement(421334..421627)
/locus_tag="CDBI1_01820"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:202350"
gene 424100..425035
/locus_tag="CDBI1_01825"
/db_xref="GeneID:12216271"
CDS 424100..425035
/locus_tag="CDBI1_01825"
/note="COG3290 Signal transduction histidine kinase
regulating citrate/malate metabolism"
/codon_start=1
/transl_table=11
/product="two-component sensor histidine kinase"
/protein_id="YP_006197531.1"
/db_xref="GI:384359679"
/db_xref="GeneID:12216271"
/translation="MENNFIFPIVILTLFIFSNLIMNKYRFYKELDILKRGILTFFVS
CFVWILFMEGIEYIQLSLGYNFLLEGVLNIILFLILIILSFYIGFKFIRLLDNNNKQE
YKLQKLDSKINHKDNIIVKLRSQKHDYLKHLQVVYSLLNTGLAEDAKEYITNISNSFK
SKNSRYGKVSYLDAIASLKYEECLEKNISFDVYIQDFMDNLEIEPNDMSSVLLNIIDN
AIESLSAIQKEKKYIRLHAYEDEFQYIIAIKNNGPKIHNVESIFLDGFSTKEGQDRGF
GLYLVKNILDKYDYSILVNSDDFLTEFVILIPKYY"
misc_feature 424727..425020
/locus_tag="CDBI1_01825"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature order(424739..424741,424751..424753,424760..424762,
424841..424843,424847..424849,424853..424855,
424922..424933,424979..424981,424985..424987,
425000..425002,425006..425008)
/locus_tag="CDBI1_01825"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature 424751..424753
/locus_tag="CDBI1_01825"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature order(424853..424855,424922..424924,424928..424930)
/locus_tag="CDBI1_01825"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene 425054..425791
/locus_tag="CDBI1_01830"
/db_xref="GeneID:12216272"
CDS 425054..425791
/locus_tag="CDBI1_01830"
/note="COG3279 Response regulator of the LytR/AlgR family"
/codon_start=1
/transl_table=11
/product="two-component response regulator"
/protein_id="YP_006197532.1"
/db_xref="GI:384359680"
/db_xref="GeneID:12216272"
/translation="MIKVLICDDDKIVRDDIANIVKESGYVDYVKKVKDGIEAIEFIK
SEKIDLLIIDIDMPYKNGIDSAKEILSIDKDIHIVFVTGFADYSLESFKVHPIDFIVK
PFKKEKILDSINIAIDHINSHKIAKNNFIEDTLFVYKIRKQIHMINFDDIVMFEKNSR
AINLYTRDEDTIKFYENFDDLKKRLPPNFFMTHRQYIVNLRLIHKVIPINKSSLEIKF
INFQESATLNKSLEKDFLYRFYRVKRF"
misc_feature 425054..425722
/locus_tag="CDBI1_01830"
/note="Response regulator of the LytR/AlgR family
[Transcription / Signal transduction mechanisms]; Region:
LytT; COG3279"
/db_xref="CDD:33090"
misc_feature 425066..425404
/locus_tag="CDBI1_01830"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature order(425075..425080,425213..425215,425237..425239,
425297..425299,425348..425350,425357..425362)
/locus_tag="CDBI1_01830"
/note="active site"
/db_xref="CDD:29071"
misc_feature 425213..425215
/locus_tag="CDBI1_01830"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature order(425222..425227,425231..425239)
/locus_tag="CDBI1_01830"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature 425357..425365
/locus_tag="CDBI1_01830"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature 425477..>425713
/locus_tag="CDBI1_01830"
/note="LytTr DNA-binding domain; Region: LytTR; pfam04397"
/db_xref="CDD:146835"
gene complement(425951..431008)
/locus_tag="CDBI1_01835"
/db_xref="GeneID:12216273"
CDS complement(425951..431008)
/locus_tag="CDBI1_01835"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197533.1"
/db_xref="GI:384359681"
/db_xref="GeneID:12216273"
/translation="MLERTRVEKNPKIIENFKNNFTKSSSKQYYDLAKSLWDCIENSS
YYYREPEDKFLNMIKKYYNCHYYEIKNMDELLSGPLKNALELIFTSEQVEELCQLIKR
KMDYTYSGGYYRKGYRSNKLVDYFRGIIRFISNYVDLIYYDFSVIDYLTLPNKVLYYD
SIMSDKIALEIDKGNQKVTSALEEVIFGENQTALLTRQMIIGIMKSHSDKCYEMLSKL
LLAAKQQEGLRQQIVESLDEGTISASIYMLKTILDNNLERFSSVIRALDTWTGLGFSD
QKPGIIRKCLELSYKSLTDEKFRIESINSNDNLEIYFALWATATYNIYDSYSLIENLL
SCQEKYKKLVALYFLSHTESTYFKHSIASKNIKGDDLEILAWVITNFYVEGSVGYYYS
WQNRETNFDLSNTPIDKDFDARKEQFESLKHTLEILNSKTKSFSGSVFPWTWIEISSH
EILKCMMTLTAYDMNAQFIDVLMENCHLMSSDLRASLIVNFVNEPKTDRQREFLLECL
SDKSVSNRETVLSLLRKLELTDVELDKITNLLSLKTSSIRQTVIKILLEQDDSNLENI
ASSLIKSSNSQKCLGGLEIVNLLKDNSDRQELYNKLILLIEDIDKSKKNTSQVQILID
NLLGKAKNDYCKENGFGIYNPENKVQIPEQFDFKDDSNSSSKLNKIISNISLSTSEDS
VSVATKKEAKKILDTDINKIIKVYEKFDELITENADYEYEVERWSGNVDKVLLGYSTY
NLTPIKYKVSNDTLDNYPLAELWRETSKKLDLDYKLILDILFYSISTCGYNETEKSWF
SSIYSNVLDSKKQNKIYTKLEKFKFNGLTRKLLRVLLNEFDHKEIFNYCLEIYYKLRN
LLTIEQCKKQRVEFTKNYYRQNEYCPALNAPILNYWLDKAHSFIYDDISFTKFFYTTF
SNYQLLEYKFPFYTSINVFARAHELGLMTEEQVNREMISGYNASNIIRTLTNPRWAGD
TLEKYPWLKDNLKTVTNRIIEIESRRGDMPTEVSHLANNIQYFEGIDYFVNILVALGK
ETFQRGYSYGSNYSKKDVLSSLLKNCYPTKEDDSKKLKSLLKNTDITELRLIESAMYA
PQWVNIIEKYLNWKGLKSTIWYFHAHINEGFSAQKESEVALFSPISPRSFIDGAFDVD
WFLDSYKTIGEERFNILYKSAKYITSGGNSHRRAQLYADATLGKLDKDMLMKEIETNR
NQDKLRSFSLLPMKKGDLKEATFRYEFIQKFAKESKQFGAQRRESESKACTIALENLA
RSAGFGDVNRMMWALETEKLNEVAHLFKPKDIDGTSIWIDVDESGKASTKVQKGNKSL
KSIPKAIAKHPYVLELKSVQKDLKSQYSRAKQSLEQAMKNEIVFTVKEIANIYKNPVI
CPLIKNLVWVCDDNIGYVYNDKSKFFICNIEGETYKLTAKNKLKLAHPVHLFESGKWS
EFQHDLFSKQLVQPFKQVFREYYRINSDEISEKTISRRYAGHQIQPKKTVALLRNQLW
TVDYEEGLQKVFYKENIVAKMFALADWFSPADIEPPTIETVEFFDRKTYKSLELASIP
PILFSEVMRDIDLVVSVAHAGGVDPETSHSTVEMRIAIAKELLLLLKINNINFEGSHV
LITGNLGEYSVHMGSGIVHKKGMGALNILPVHSQSRGKIFLPFADEDPKTAEIMSKIL
LLAEDNKIKDPSILSNL"
misc_feature complement(426524..427057)
/locus_tag="CDBI1_01835"
/note="Domain of unknown function (DUF4132); Region:
DUF4132; pfam13569"
/db_xref="CDD:205747"
gene complement(431033..431452)
/locus_tag="CDBI1_01840"
/db_xref="GeneID:12216274"
CDS complement(431033..431452)
/locus_tag="CDBI1_01840"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197534.1"
/db_xref="GI:384359682"
/db_xref="GeneID:12216274"
/translation="MQIYFRVKAVGKRKPMLELTPFDVSDNINCLKEAISEIVSKNVL
EYNEKIPEKSIINFLTNEEIESQADIGKVGFGSIYNENKQSVEKAIEVALQAFEDGIY
KVLINEDVIEKLDSPINLKSGDIFTFIRLTLLAGRMF"
gene complement(431685..431936)
/locus_tag="CDBI1_01845"
/db_xref="GeneID:12216275"
CDS complement(431685..431936)
/locus_tag="CDBI1_01845"
/note="'COG0567 2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, and related enzymes'"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197535.1"
/db_xref="GI:384359683"
/db_xref="GeneID:12216275"
/translation="MNRYTKIINMMGSYYTKDFEKEKKNVIKVREVKEDTVRKFFLQG
DCEVLVVFEDTGKEILIDDFSPEEDIKKYLGTKFINKKR"
gene 432025..432756
/locus_tag="CDBI1_01850"
/db_xref="GeneID:12216276"
CDS 432025..432756
/locus_tag="CDBI1_01850"
/note="COG0727 Predicted Fe-S-cluster oxidoreductase"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197536.1"
/db_xref="GI:384359684"
/db_xref="GeneID:12216276"
/translation="MTSIKNKDILNCIDYSIKNKLFDKLNDVYKSLPVGNCSGCGNCC
MESVGINLIEFLNIFCYLEDRVDLKKSCISKILDYYFEEYTRKNPCPFKDTNNRCLIY
EVRPLNCRMFGHWKKEDYNKNLDNVIEKNNNYRELMKKQYGFEINDEVVNYRIDYCDR
FIPNKDYLSKSKRLSFFDELMILDSNIYSSGNIDIDFRDRGIVEYFIESLLYRNLAYN
VKIRISKEYKIRKRTIDRIKRIVLV"
misc_feature 432133..432393
/locus_tag="CDBI1_01850"
/note="Flagellin N-methylase; Region: FliB; pfam03692"
/db_xref="CDD:112504"
gene 432815..433726
/locus_tag="CDBI1_01855"
/db_xref="GeneID:12216277"
CDS 432815..433726
/locus_tag="CDBI1_01855"
/note="'COG0491 Zn-dependent hydrolases, including
glyoxylases'"
/codon_start=1
/transl_table=11
/product="metallo-beta-lactamase"
/protein_id="YP_006197537.1"
/db_xref="GI:384359685"
/db_xref="GeneID:12216277"
/translation="MNLTKVKGNTFFIKGGTNTGIYVFEDNTALMIDPGLCGSRPRRV
NKVLDENNIQVRYIINTHGHDDHYGACNQFKEYYKDVCIMSSEYDKLYIENPELFSKY
IVGGKSNVFMDNILKNKMLDDIKIDKSIEVGKIELNNEMFDIIEFQGHTPGSIAVLTK
DNVIFVGDLLIGDEILSKYDFLFLYDIQEQINSLEKLKNIDFEYLVLGHGKQVISKED
SYKLIEKHLNALKKYLYQIRELLVEPKSLEILLKNIINNNNLSNNYKEYHFFKSSLVS
VISYLVDLEEIGYILENGELLYYTKTK"
misc_feature 432848..433546
/locus_tag="CDBI1_01855"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
misc_feature 432875..433441
/locus_tag="CDBI1_01855"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
gene 433777..434589
/locus_tag="CDBI1_01860"
/db_xref="GeneID:12216278"
CDS 433777..434589
/locus_tag="CDBI1_01860"
/note="COG2357 Uncharacterized protein conserved in
bacteria"
/codon_start=1
/transl_table=11
/product="guanosine 3',5'-bis-pyrophosphate (ppGpp)
synthesis/degradation protein"
/protein_id="YP_006197538.1"
/db_xref="GI:384359686"
/db_xref="GeneID:12216278"
/translation="MEYEKWNEILAPYEHAVEELKIKFKNIRKEYLAKGEYSPIEFVT
GRTKKISSIISKLKRINAKDIETEIDDIAGIRIMCQFVEDIYAIVDLIKVRNDMTIIG
EKDYITNYKDSGYRSYHVIIKYPINSIAGSKEIICEIQIRTLAMNFWATIEHSLKYKY
DHYIPETLAERLRRASDAAFLLDQEMSEIREDIMKAQAMYQMKSIAIRDTLNRIQELY
DLGDTHKAMQYQRKLDRTETDKNITEILELKQEIDILLEQYKDTKVDDKVVQ"
misc_feature 433879..434232
/locus_tag="CDBI1_01860"
/note="Nucleotidyltransferase (NT) domain of RelA- and
SpoT-like ppGpp synthetases and hydrolases; Region:
NT_Rel-Spo_like; cd05399"
/db_xref="CDD:143389"
misc_feature order(433912..433914,433918..433920,433987..433992,
434002..434004,434086..434088,434092..434094,
434107..434109,434113..434115,434119..434121,
434131..434133,434188..434190,434194..434196,
434200..434202,434224..434229)
/locus_tag="CDBI1_01860"
/note="synthetase active site [active]"
/db_xref="CDD:143389"
misc_feature order(433912..433914,434086..434088,434092..434094,
434107..434109,434113..434115,434119..434121,
434131..434133,434188..434190,434194..434196,
434224..434226)
/locus_tag="CDBI1_01860"
/note="NTP binding site [chemical binding]; other site"
/db_xref="CDD:143389"
misc_feature order(433987..433989,434188..434190)
/locus_tag="CDBI1_01860"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:143389"
gene 434699..435391
/locus_tag="CDBI1_01865"
/db_xref="GeneID:12216279"
CDS 434699..435391
/locus_tag="CDBI1_01865"
/note="COG1768 Predicted phosphohydrolase"
/codon_start=1
/transl_table=11
/product="phosphoesterase"
/protein_id="YP_006197539.1"
/db_xref="GI:384359687"
/db_xref="GeneID:12216279"
/translation="MSLYAIGDLHFSTSVNKPMNIFGSNWDGHEKKIIDNWKEVVKEE
DMVLVLGDTSWGINLSEAKKDLDIISKLPGQKILIKGNHDYWWTTVTSLNKLYEDMRF
IQTNFYEYKDYAICGGRGWICPNDVKFDETDEKVYKREEHRLRLSLESARKSGHSKII
VITHYPPTNDKLEESLFTKLFEEYNVEKVIYGHLHGKESFKMGLKGIRNGVEYTLASC
DYTEFNLIKVHD"
misc_feature 434705..435370
/locus_tag="CDBI1_01865"
/note="metallophosphatase superfamily, metallophosphatase
domain; Region: MPP_superfamily; cl13995"
/db_xref="CDD:214216"
misc_feature 434705..435283
/locus_tag="CDBI1_01865"
/note="Calcineurin-like phosphoesterase; Region:
Metallophos; pfam00149"
/db_xref="CDD:201036"
misc_feature order(434720..434722,434726..434728,434852..434854,
434942..434947,435188..435190,435275..435277)
/locus_tag="CDBI1_01865"
/note="active site"
/db_xref="CDD:163614"
misc_feature order(434720..434722,434726..434728,434852..434854,
434942..434944,435188..435190,435275..435277)
/locus_tag="CDBI1_01865"
/note="metal binding site [ion binding]; metal-binding
site"
/db_xref="CDD:163614"
gene 435478..436419
/locus_tag="CDBI1_01870"
/db_xref="GeneID:12216280"
CDS 435478..436419
/locus_tag="CDBI1_01870"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197540.1"
/db_xref="GI:384359688"
/db_xref="GeneID:12216280"
/translation="MRWILVFIFLYLIPLVVIFRNYKNFKRSCIYSSIYVVLATTIMI
SNIYMSGLNKIKESMYYHNYISDETYDEKYVSNFKEKESTDLKQDNKKNEEISNNKNL
NNKQDRNIQNKESNEEGSNDIKEKNNSDSNVSVNNKSEKQEDNTKENNKYTSKEKNSE
DIKKIDMESIGIFKKEIYNIERAALVPMRECIPYTKDIAKNITKLSSIKKDVTNARNK
CKEVVKEYENMQIPELSKEKYTETLSNARDDVKKAYELREKSMESALKLINTKSPKYI
GKITEYLDLSDKQIESFKNRLNDLKEEINNSETNNIN"
gene 436456..437613
/locus_tag="CDBI1_01875"
/db_xref="GeneID:12216281"
CDS 436456..437613
/locus_tag="CDBI1_01875"
/note="COG0500 SAM-dependent methyltransferases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197541.1"
/db_xref="GI:384359689"
/db_xref="GeneID:12216281"
/translation="MNKQSIGKLNMFFMGITQRNLDNRHFFIELEVIFKSGRKEFKGI
AIEEDNKYKFNFKGKSDLYTFNELLKNISKEAENYDGLVFKYVERGTIVVIEGDNKKV
NVKYLDNKEEVPKIDEFTASQIKNRDYYVKVGQANALLKEIGVLTKDGKIKNDKIRKY
NQIDHFVELIDSILKEIKDKDCITILDCACGKSYLSFVLNFYIKEVLKKNCYFIGIDY
SDVVIEASKNMAKNLGYKNMSFIKEDLTNYTPNRDVDLVISLHACDTATDMAIGLGIR
AKSEAIVVVPCCHKELLGQYRYEAMEPILKHGVFKARFADLITDGLRTLLLEGNGYDT
SVVEYISPLDTPKNLMIRAIKTKTNNDKALKEYKELKSQFGVEPTLEKLIY"
misc_feature 437002..437346
/locus_tag="CDBI1_01875"
/note="Methyltransferase domain; Region: Methyltransf_31;
pfam13847"
/db_xref="CDD:206018"
misc_feature 437005..>437247
/locus_tag="CDBI1_01875"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cd02440"
/db_xref="CDD:100107"
misc_feature order(437017..437037,437104..437109,437182..437190,
437233..437235)
/locus_tag="CDBI1_01875"
/note="S-adenosylmethionine binding site [chemical
binding]; other site"
/db_xref="CDD:100107"
gene 437765..438325
/locus_tag="CDBI1_01880"
/db_xref="GeneID:12216282"
CDS 437765..438325
/locus_tag="CDBI1_01880"
/note="COG5663 Uncharacterized conserved protein"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197542.1"
/db_xref="GI:384359690"
/db_xref="GeneID:12216282"
/translation="MNKLNICIDIDGTITSPYHFLPYLNDIFNKNITEAECITHNWEE
LYGSGIRDVYAEFNNKYIHSYDEAKIVEGATEVISTLSKGHNLSFVTARHECLTDVTK
NWLSRQGFSDIDVYLLGSDYKVEKARELSCDIFIEDNPLNSVQLADDGVKVILLDTNY
NKDVKHQNIVRVSNWIDIEKIIKQGI"
misc_feature 437765..438316
/locus_tag="CDBI1_01880"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:214172"
gene 438353..438844
/locus_tag="CDBI1_01885"
/db_xref="GeneID:12216283"
CDS 438353..438844
/locus_tag="CDBI1_01885"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197543.1"
/db_xref="GI:384359691"
/db_xref="GeneID:12216283"
/translation="MIDLKIENRKGKIHVKSSEIKDILELRPDFEYVQDISNTINQEN
ILVFDCQLTGNSFDMDDLDIEEILEELGEEIDESYFSVLFEDVRAYLKDATDEIEADL
QDNYLFDNLRCYFDIYNINQEFTDFKFVFLVSFKDIKISSLANLAKIVSKRQLIGASK
FYS"
gene 439073..439624
/locus_tag="CDBI1_01890"
/db_xref="GeneID:12216284"
CDS 439073..439624
/locus_tag="CDBI1_01890"
/note="COG1396 Predicted transcriptional regulators"
/codon_start=1
/transl_table=11
/product="transcriptional regulator"
/protein_id="YP_006197544.1"
/db_xref="GI:384359692"
/db_xref="GeneID:12216284"
/translation="MQSLNEIIAENLKKIRKEKHLSLDKIAQLSGVSKSMLSQIEKCE
VNPTISTLKKITNGLKISFTSLMERQESDIELIQKSDIDHFIEDNGKYISYPIFPFDS
KRRFEIFMIEIEEGGNLDSNAELPGTQEFITVFSGEVTIKINGEDYIVSSGNSIRFKA
DVSHIYRNSGKGIAKMSMVVYYI"
misc_feature 439073..439600
/locus_tag="CDBI1_01890"
/note="DNA-binding transcriptional repressor PuuR;
Provisional; Region: PRK09943"
/db_xref="CDD:182158"
misc_feature 439097..439270
/locus_tag="CDBI1_01890"
/note="Helix-turn-helix XRE-family like proteins.
Prokaryotic DNA binding proteins belonging to the
xenobiotic response element family of transcriptional
regulators; Region: HTH_XRE; cd00093"
/db_xref="CDD:28977"
misc_feature order(439109..439111,439121..439123,439196..439198)
/locus_tag="CDBI1_01890"
/note="non-specific DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:28977"
misc_feature order(439118..439120,439193..439195)
/locus_tag="CDBI1_01890"
/note="salt bridge; other site"
/db_xref="CDD:28977"
misc_feature order(439139..439144,439175..439177,439184..439186,
439196..439201)
/locus_tag="CDBI1_01890"
/note="sequence-specific DNA binding site [nucleotide
binding]; other site"
/db_xref="CDD:28977"
misc_feature <439457..439615
/locus_tag="CDBI1_01890"
/note="Cupin domain; Region: Cupin_2; pfam07883"
/db_xref="CDD:203791"
gene 439710..440642
/locus_tag="CDBI1_01895"
/db_xref="GeneID:12216285"
CDS 439710..440642
/locus_tag="CDBI1_01895"
/note="COG1650 Uncharacterized protein conserved in
archaea"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197545.1"
/db_xref="GI:384359693"
/db_xref="GeneID:12216285"
/translation="MNNKKAVFFFCSDLKKDPVASNVIKCCEEIMDLNQTDIVIDDNF
VLEFKDKNNNLFHFVKTKDVISHNYKYYLPILNRHFRDYDFAGVVNWHEGENAPEHIL
TAHTIGDVPTGEFGNSNPRYFKNLINAIEDIKNENLLDEFTTLTEATHWSGTTYGEES
KLITEYSVPMLDIEIGSSSDSFNNSIAIQVLAKSLIRVFDCDEPLKTLLCVGGVHFEK
SFSDIIKNKEYNISIGHVLPNQWIVSGMYDDESGFEKLEKCINSIEGGIDCIVFHDKL
KGTYKEQCRKLGEKLNVPVFKHKILKNPKDLPIW"
misc_feature 439920..440603
/locus_tag="CDBI1_01895"
/note="D-aminoacyl-tRNA deacylase; Region: tRNA_deacylase;
cl00716"
/db_xref="CDD:193915"
gene 440697..441560
/locus_tag="CDBI1_01900"
/db_xref="GeneID:12216286"
CDS 440697..441560
/locus_tag="CDBI1_01900"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197546.1"
/db_xref="GI:384359694"
/db_xref="GeneID:12216286"
/translation="MILSYFALLIRVVLLAFERVVVRLLGDEEGDIYKNIASSFLFFF
IGGVCLLPFSIMDRVSDWSFLIPCYISSLVYSIGSVAYVTSLATGEVSLVTPINSLNS
LFLLLLSVIFLGEGLSLAKVAGIIIMIGGVFILKKVSSFLKNVSVIFNNLPCRLMFLY
IFLQSVGRVLDKAFFVQVSPILYSTILYFFVGLNLFIFLAFKKKQKIICEIFSNKKGL
SILSGAINGYSYLALLIALNNLELSIAEPFSQVSMIITLILAHFIFKENIKEKIPGSI
LILIGGWLLLL"
gene 441807..443669
/locus_tag="CDBI1_01905"
/db_xref="GeneID:12216287"
CDS 441807..443669
/locus_tag="CDBI1_01905"
/note="COG1264 Phosphotransferase system IIB components"
/codon_start=1
/transl_table=11
/product="PTS system beta-glucoside-specific transporter
subunit IIABC"
/protein_id="YP_006197547.1"
/db_xref="GI:384359695"
/db_xref="GeneID:12216287"
/translation="MNYKKTAIDIIEQVGGSKNILALEHCSTRLRFKLIDRSKVNQDA
LKKVQGVMSIVNGAQFQVVIGNSVVDVYDEILKVCPLDTNDSTVKTEEKINLGTRFIE
FIINIFQPLIFAIAGAGILKSLLMLLAMFNILKSDSTIYTLLVAISDATFYFLPLMVA
VTTANVLKCNRLVAIAAVGYLLLPATTTALSEGVELFGFTIPNIAYNAQVFPAILCVS
FLATMEKIFNKYSPKPIRTFFVPMMSLAITVPITLTILGPLGYNVGTIFTTIILFLYN
KMGFLVVGLLAAFLPFMVATGMHKALIPYSINTIGKLGYEALYMTSSLAHNISESGAC
FAVALRTKDETLKQTALSAGISALMGITEPALYGITLQHKRAMLGVVFSSAISGTFLG
LFAVKGFVIVGPGLASMSMFIDPNNGNNLIFASIGFVIAILGSFIITLIIWKEDTNTV
ESSIGDVVEEELEEEKEVNILVTPVEGKVIDLSKVNDELFASKTLGDGVAIIPTNGNL
YAPCDSEVVMLFETKHAIGLRTKNGAEILIHIGINTVSMNGDGFKTFVKTGDNVKEGD
LLIQFDLDKISHANLDSTVMIVNNNGADYAYKVLNQSYGNVKKGSILFDVKGGI"
misc_feature 441813..443657
/locus_tag="CDBI1_01905"
/note="PTS system, beta-glucoside-specific IIABC
component; Region: PTS-II-ABC-beta; TIGR01995"
/db_xref="CDD:162649"
misc_feature 441816..442040
/locus_tag="CDBI1_01905"
/note="PTS_IIB, PTS system, glucose/sucrose specific IIB
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIB_glc; cd00212"
/db_xref="CDD:29267"
misc_feature 441879..441899
/locus_tag="CDBI1_01905"
/note="active site turn [active]"
/db_xref="CDD:29267"
misc_feature 441882..441884
/locus_tag="CDBI1_01905"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29267"
misc_feature 442080..443153
/locus_tag="CDBI1_01905"
/note="Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
transport and metabolism]; Region: PtsG; COG1263"
/db_xref="CDD:31455"
misc_feature 443217..443654
/locus_tag="CDBI1_01905"
/note="Phosphotransferase system IIA components
[Carbohydrate transport and metabolism]; Region: NagE;
COG2190"
/db_xref="CDD:32373"
misc_feature order(443265..443276,443286..443291,443355..443360,
443364..443369,443385..443393,443409..443417,
443421..443423,443433..443435,443439..443444,
443478..443480,443574..443576,443583..443585)
/locus_tag="CDBI1_01905"
/note="HPr interaction site; other site"
/db_xref="CDD:29265"
misc_feature order(443265..443267,443271..443276,443280..443282,
443286..443291,443358..443360,443364..443366,
443376..443378,443415..443417,443421..443423,
443433..443435,443439..443444,443448..443450,
443574..443576)
/locus_tag="CDBI1_01905"
/note="glycerol kinase (GK) interaction site [polypeptide
binding]; other site"
/db_xref="CDD:29265"
misc_feature order(443370..443372,443376..443378,443421..443423,
443427..443429)
/locus_tag="CDBI1_01905"
/note="active site"
/db_xref="CDD:29265"
misc_feature 443421..443423
/locus_tag="CDBI1_01905"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29265"
gene 443672..445138
/locus_tag="CDBI1_01910"
/db_xref="GeneID:12216288"
CDS 443672..445138
/locus_tag="CDBI1_01910"
/note="COG2723
Beta-glucosidase/6-phospho-beta-glucosidase/beta-
galactosidase"
/codon_start=1
/transl_table=11
/product="6-phospho-beta-glucosidase"
/protein_id="YP_006197548.1"
/db_xref="GI:384359696"
/db_xref="GeneID:12216288"
/translation="MRKFPEGFLWGGATAANQFEGGWNLGGKGWSVSDVAKAHFDADV
KDYKSNNEITTKDIEEGLAHPEDEVNYPKRHGSDFYHHYKEDIALMAEMGFKTYRMSI
AWSRIFPNGDDKEPNEEGLQFYDDVFDELISYGIEPLVTMSHYEPPLNIVLNYDGWYS
RQVINMFVRYVETICERYKNKVKYWLTFNEVDSMIRHPYTTGGLVRDRFKDKNFEEVI
FQAMHHQFVASALATKICHEIIPNSKVGCMLTKLTYYPYTCRPEDVLATQQKMRSIYA
YSDTQVFGEYPVYLLSYFKNNNIQIAKEEHDDEIMKKYPVDFISFSYYMSSCEAADTT
GLDITPGNTLLAVKNPYLEMSEWGWQIDSIGLRISLIELYDRYRKPLFIVENGLGAKD
ILTEDKKVHDQYRINYLKEHFKCMLDAIIEDGVELWGYTSWGCIDLVSESTKQMSKRY
GYIYVDADDYGKGTYNRYKKDSFYWYKKVIENNSIDFK"
misc_feature 443672..445129
/locus_tag="CDBI1_01910"
/note="Glycosyl hydrolase family 1; Region: Glyco_hydro_1;
cl01046"
/db_xref="CDD:207297"
gene 445162..445998
/locus_tag="CDBI1_01915"
/db_xref="GeneID:12216289"
CDS 445162..445998
/locus_tag="CDBI1_01915"
/note="COG3711 Transcriptional antiterminator"
/codon_start=1
/transl_table=11
/product="beta-glucoside bgl operon transcription
antiterminator"
/protein_id="YP_006197549.1"
/db_xref="GI:384359697"
/db_xref="GeneID:12216289"
/translation="MNYIIKKVLNSSVVLVHDAKYNEFILLGKGIGYGKKTGEYICGS
NDNQMFVPVENTKSKKFLELMDDIPVDILKITQEIIVEAEKLLNSSFNKNLYLILADH
FNFAIERMRKGIKITNRVFWEIKNYYPNEFKVGMVAIYMVEERLGIQLPEEEAANIAF
HFANAMASDGNSYDTIKYAKVIGEIINIFVFSLNRTLDKKSMHYMRFITHIKFFVERF
FSDSMLSSGDDLLFNQMKRSNPKEMLIALKVRDFLEKKYGKKLTNEEIAFLVVHIARV
KQ"
misc_feature 445162..445995
/locus_tag="CDBI1_01915"
/note="transcriptional antiterminator BglG; Provisional;
Region: PRK09772"
/db_xref="CDD:170086"
misc_feature 445390..445656
/locus_tag="CDBI1_01915"
/note="PRD domain; Region: PRD; pfam00874"
/db_xref="CDD:201484"
misc_feature 445711..445986
/locus_tag="CDBI1_01915"
/note="PRD domain; Region: PRD; pfam00874"
/db_xref="CDD:201484"
gene 446564..448147
/locus_tag="CDBI1_01920"
/db_xref="GeneID:12216290"
CDS 446564..448147
/locus_tag="CDBI1_01920"
/note="COG0367 Asparagine synthase
(glutamine-hydrolyzing)"
/codon_start=1
/transl_table=11
/product="asparagine synthetase"
/protein_id="YP_006197550.1"
/db_xref="GI:384359698"
/db_xref="GeneID:12216290"
/translation="MINLEEKYLTRKDTYMIKILEYNGHIRNWKVLCEELGIDSSLCR
DERERAILVEAYKTWGYDMANHMHGMFAFALWDTVEKKLFCLRDQFGVKPFYYYETEN
GKLLYGSSIRKIMEQPGFVKELNEDMLQIYMSFTYVAGENTFFRGVKKLMPGHYLVYQ
NKTVCIGRYWKPEFHPDHSKSIEEWTDEIHTTLQKIMPEVKSENETAELFLSGGVDSS
YILAMSDIEKTGSCGYEEERFDESKLAQQTANILGCKNSRYIITPEEYFASVPYVMYH
MEQPTGDASAIVFAIGCKAAAENTNICYSGEGADEFFGGYNIYHKAECYGENLKTFYI
GNTNIMNEGEKRKILKKYNPDVLPIEVVKGIYEETEELDTLTNMSNVDIQIWLEGDIY
FNIDKMSTAVGLEVRMPLTDTRIFDIASRIPSEYKVKGKENKIAFRTAASKTLPEEIA
FRNKLGFIVPIRIWMADDQYNKDIRDKFNSEIADKFFNIDEINEIFNDYISGNSDNWR
KIWMIYTFLVWYEIYFVKC"
misc_feature <446618..447076
/locus_tag="CDBI1_01920"
/note="Glutamine amidotransferases class-II (GATase)
asparagine synthase_B type. Asparagine synthetase B
catalyses the ATP-dependent conversion of aspartate to
asparagine. This enzyme is a homodimer, with each monomer
composed of a glutaminase domain and a...; Region: AsnB;
cd00712"
/db_xref="CDD:48476"
misc_feature order(446630..446638,446705..446707)
/locus_tag="CDBI1_01920"
/note="active site"
/db_xref="CDD:48476"
misc_feature 447188..447943
/locus_tag="CDBI1_01920"
/note="The C-terminal domain of Asparagine Synthase B.
This domain is always found associated n-terminal
amidotransferase domain. Family members that contain this
domain catalyse the conversion of aspartate to asparagine.
Asparagine synthetase B catalyzes the...; Region:
Asn_Synthase_B_C; cd01991"
/db_xref="CDD:30178"
misc_feature order(447191..447199,447257..447265,447437..447439,
447476..447484)
/locus_tag="CDBI1_01920"
/note="Ligand Binding Site [chemical binding]; other site"
/db_xref="CDD:30178"
misc_feature order(447191..447199,447257..447265,447437..447439,
447476..447484)
/locus_tag="CDBI1_01920"
/note="Molecular Tunnel; other site"
/db_xref="CDD:30178"
gene complement(448212..448808)
/locus_tag="CDBI1_01925"
/db_xref="GeneID:12216291"
CDS complement(448212..448808)
/locus_tag="CDBI1_01925"
/note="COG0535 Predicted Fe-S oxidoreductases"
/codon_start=1
/transl_table=11
/product="radical SAM protein"
/protein_id="YP_006197551.1"
/db_xref="GI:384359699"
/db_xref="GeneID:12216291"
/translation="MNILYTIENSIYVNITNTCPCSCVFCIRNEKDEVANSGSLWLEH
EPSVDEVKEAFNKYNLDDYDEIVFCGYGEPLMRINELIEVAKFIKEKSSIKIRINTNG
LSDLIHNKKTAILLKDVIDTVSISLNAPNKEAYNRVTQPKFGEKSFDYMLGFARDCKK
YIKEVAFSVVDEISPEEIEESKQLAKKLDIPLRVRHKN"
misc_feature complement(448221..448805)
/locus_tag="CDBI1_01925"
/note="radical SAM protein, TatD family-associated;
Region: tatD_link_rSAM; TIGR04038"
/db_xref="CDD:188553"
misc_feature complement(<448353..448772)
/locus_tag="CDBI1_01925"
/note="Radical SAM superfamily. Enzymes of this family
generate radicals by combining a 4Fe-4S cluster and
S-adenosylmethionine (SAM) in close proximity. They are
characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster; Region:
Radical_SAM; cd01335"
/db_xref="CDD:100105"
misc_feature complement(order(448431..448433,448506..448514,
448590..448595,448602..448604,448728..448736,
448740..448742,448746..448748,448752..448754))
/locus_tag="CDBI1_01925"
/note="FeS/SAM binding site; other site"
/db_xref="CDD:100105"
gene complement(448835..449362)
/locus_tag="CDBI1_01930"
/db_xref="GeneID:12216292"
CDS complement(448835..449362)
/locus_tag="CDBI1_01930"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197552.1"
/db_xref="GI:384359700"
/db_xref="GeneID:12216292"
/translation="MEKMNKVTSKKTTYIVTSALFASIICLTIAYILHIPVGGNNGYV
HIGDAFIYLAATILPTNYAIAASAIGAGLADLSTGAAIWVIPTIIIKPILVLFFTSKS
DKIINKRNIVASVVAGIVGLVLYMFAEGIIIGSFTSAFVMSLLGLLQPIGSFIVFIIL
GMALDKLDFKKRYFN"
misc_feature complement(448850..449302)
/locus_tag="CDBI1_01930"
/note="TIGR04002 family protein; Region: TIGR04002"
/db_xref="CDD:188517"
gene complement(449724..450722)
/locus_tag="CDBI1_01935"
/db_xref="GeneID:12216293"
CDS complement(449724..450722)
/locus_tag="CDBI1_01935"
/note="COG1052 Lactate dehydrogenase and related
dehydrogenases"
/codon_start=1
/transl_table=11
/product="D-lactate dehydrogenase"
/protein_id="YP_006197553.1"
/db_xref="GI:384359701"
/db_xref="GeneID:12216293"
/translation="MKILVFGARDYEEPVIKKWSEEHKDVQVDIYPENMTEENVVKAK
GYDGISIQQTNYIDNPYIYETLKDAGVKVIASRTAGVDMIHFDLVNENGLIVTNVPSY
SPNAIAELAVTQAMNLLRKTPLVKKKVCEGDYRWIAELLGTEVRSITVGVIGTGKIGA
TSAKLFKGLGANVIAFDQYPNSDLNDILTYKDSLEDLLKEADLITLHTPLLEGTKHMI
NKDTLAIMKDGAYIVNTGRGGLINTGDLIEALESGKIRAAALDTFETEGLFLNKKMNP
GELTDPEINKLLSMEQVIFTHHLGFFTSTAIENIVYSSLSSAVEVIKTGTATNRVN"
misc_feature complement(449727..450722)
/locus_tag="CDBI1_01935"
/note="D-lactate dehydrogenase; Validated; Region:
PRK08605"
/db_xref="CDD:181499"
misc_feature complement(449823..450389)
/locus_tag="CDBI1_01935"
/note="D-isomer specific 2-hydroxyacid dehydrogenase, NAD
binding domain; Region: 2-Hacid_dh_C; pfam02826"
/db_xref="CDD:202418"
gene 451399..452598
/locus_tag="CDBI1_01940"
/db_xref="GeneID:12216294"
CDS 451399..452598
/locus_tag="CDBI1_01940"
/note="COG1804 Predicted acyl-CoA transferases/carnitine
dehydratase"
/codon_start=1
/transl_table=11
/product="isocaprenoyl-CoA:2-hydroxyisocaproate
CoA-transferase"
/protein_id="YP_006197554.1"
/db_xref="GI:384359702"
/db_xref="GeneID:12216294"
/translation="MLLEGVKVVELSSFIAAPCCAKMLGDWGAEVIKIEPIEGDGIRV
MGGTFKSPASDDENPMFELENGNKKGVSINVKSKEGVEILHKLLSEADIFVTNVRVQA
LEKMGIAYDQIKDKYPGLIFSQILGYGEKGPLKDKPGFDYTAYFARGGVSQSVMEKGT
SPANTAAGFGDHYAGLALAAGSLAALHKKAQTGKGERVTVSLFHTAIYGMGTMITTAQ
YGNEMPLSRENPNSPLMTTYKCKDGRWIQLALIQYNKWLGKFCKVINREYILEDDRYN
NIDSMVNHVEDLVKIVGEAMLEKTLDEWSALLEEADLPFEKIQSCEDLLDDEQAWAND
FLFKKTYDSGNTGVLVNTPVMFRNEGIKEYTPAPKVGQHTVEVLKSLGYDEEKINNFK
DSKVVRY"
misc_feature 451405..452589
/locus_tag="CDBI1_01940"
/note="Predicted acyl-CoA transferases/carnitine
dehydratase [Energy production and conversion]; Region:
CaiB; COG1804"
/db_xref="CDD:31989"
misc_feature 451609..452136
/locus_tag="CDBI1_01940"
/note="CoA-transferase family III; Region: CoA_transf_3;
pfam02515"
/db_xref="CDD:202268"
gene 452637..453437
/locus_tag="CDBI1_01945"
/db_xref="GeneID:12216295"
CDS 452637..453437
/locus_tag="CDBI1_01945"
/note="COG1924 Activator of 2-hydroxyglutaryl-CoA
dehydratase (HSP70-class ATPase domain)"
/codon_start=1
/transl_table=11
/product="activator of 2-hydroxyisocaproyl-CoA
dehydratase"
/protein_id="YP_006197555.1"
/db_xref="GI:384359703"
/db_xref="GeneID:12216295"
/translation="MYTMGLDIGSTASKGVILKNGEDIVASETISSGTGTTGPSRVLE
KLYGKTGLAREDIKKVVVTGYGRMNYSDADKQISELSCHARGVNFIIPETRTIIDIGG
QDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELGSISMNSQNEVSI
SSTCTVFAESEVISHLSENAKIEDIVAGIHTSVAKRVSSLVKRIGVQRNVVMVGGVAR
NSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDEAKESQKEVKNI"
misc_feature <452637..453392
/locus_tag="CDBI1_01945"
/note="Activator of 2-hydroxyglutaryl-CoA dehydratase
(HSP70-class ATPase domain) [Lipid metabolism]; Region:
COG1924"
/db_xref="CDD:32107"
misc_feature 452640..453386
/locus_tag="CDBI1_01945"
/note="Nucleotide-Binding Domain of the sugar
kinase/HSP70/actin superfamily; Region:
NBD_sugar-kinase_HSP70_actin; cl17037"
/db_xref="CDD:214262"
misc_feature order(452655..452666,452670..452672,452676..452678)
/locus_tag="CDBI1_01945"
/note="nucleotide binding site [chemical binding]; other
site"
/db_xref="CDD:212657"
gene 453452..454678
/locus_tag="CDBI1_01950"
/db_xref="GeneID:12216296"
CDS 453452..454678
/locus_tag="CDBI1_01950"
/note="'COG1775 Benzoyl-CoA
reductase/2-hydroxyglutaryl-CoA dehydratase subunit,
BcrC/BadD/HgdB'"
/codon_start=1
/transl_table=11
/product="oxygen-sensitive 2-hydroxyisocaproyl-CoA
dehydratase subunit"
/protein_id="YP_006197556.1"
/db_xref="GI:384359704"
/db_xref="GeneID:12216296"
/translation="MSEKKEARVVINDLLAEQYANAFKAKEEGRPVGWSTSVFPQELA
EVFDLNVLYPENQAAGVAAKKGSLELCEIAESKGYSIDLCAYARTNFGLLENGGCEAL
DMPAPDFLLCCNNICNQVIKWYENISRELDIPLIMIDTTFNNEDEVTQSRIDYIKAQF
EEAIKQLEIISGKKFDPKKFEEVMKISAENGRLWKYSMSLPADSSPSPMNGFDLFTYM
AVIVCARGKKETTEAFKLLIEELEDNMKTGKSSFRGEEKYRIMMEGIPCWPYIGYKMK
TLAKFGVNMTGSVYPHAWALQYEVNDLDGMAVAYSTMFNNVNLDRMTKYRVDSLVEGK
CDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQADPRAFTNAQFETRIQG
LVEVMEERKKLNRGEI"
misc_feature 453461..454642
/locus_tag="CDBI1_01950"
/note="benzoyl-CoA reductase, bzd-type, N subunit; Region:
benz_CoA_bzdN; cl11464"
/db_xref="CDD:143741"
misc_feature 453557..454642
/locus_tag="CDBI1_01950"
/note="2-hydroxyglutaryl-CoA dehydratase, D-component;
Region: HGD-D; pfam06050"
/db_xref="CDD:203384"
gene 454678..455805
/locus_tag="CDBI1_01955"
/db_xref="GeneID:12216297"
CDS 454678..455805
/locus_tag="CDBI1_01955"
/note="'COG1775 Benzoyl-CoA
reductase/2-hydroxyglutaryl-CoA dehydratase subunit,
BcrC/BadD/HgdB'"
/codon_start=1
/transl_table=11
/product="oxygen-sensitive 2-hydroxyisocaproyl-CoA
dehydratase subunit"
/protein_id="YP_006197557.1"
/db_xref="GI:384359705"
/db_xref="GeneID:12216297"
/translation="MEAILSKMKEVVENPNAAVKKYKNETGKKAIGCFPVYCPEEIIH
AAGMLPVGIWGGQTELDLAKQYFPAFACSIMQSCLEYGLKGAYDELSGVIIPGMCDTL
ICLGQNWKSAVPHIKYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKI
HESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIKSGFFMRKEEHTELVKDLIAK
LNAMPEEVCSGKKVLLTGILADSKDILDILEDNNISVVADDLAQETRQFRTDVPAGDD
ALERLARQWSNIEGCSLAYDPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPL
VRKDIEDSGIPTLYVEIDQQTQNNEQARTRIQTFAEMMSLA"
misc_feature 454729..455787
/locus_tag="CDBI1_01955"
/note="benzoyl-CoA reductase, bzd-type, N subunit; Region:
benz_CoA_bzdN; cl11464"
/db_xref="CDD:143741"
misc_feature 454777..455793
/locus_tag="CDBI1_01955"
/note="2-hydroxyglutaryl-CoA dehydratase, D-component;
Region: HGD-D; pfam06050"
/db_xref="CDD:203384"
gene 455853..456986
/locus_tag="CDBI1_01960"
/db_xref="GeneID:12216298"
CDS 455853..456986
/locus_tag="CDBI1_01960"
/note="COG1960 Acyl-CoA dehydrogenases"
/codon_start=1
/transl_table=11
/product="acyl-CoA dehydrogenase family protein"
/protein_id="YP_006197558.1"
/db_xref="GI:384359706"
/db_xref="GeneID:12216298"
/translation="MLYNKEQELLRKAVRDFVSKELDTLPAEMDKTGVMPKELIKKLA
DAKFISSNIPEEYGGGGAGYVSYAIVMEEIARRCASTATFVTAGSSLASLPILYNGTE
EQKQKYLKGIATGELIGAFGLTEPGAGSDAGGQQTTAELVGDHYILNGRKTFITNGPF
CDVAIVIAVTDRSKGLRGTSAFIVESKWDGFSTGAHEDKMGIRGTETSDLIFENVKVP
KENLLGKEGQGFKIAMGTLEVGRIGVAALALGIAQGALDEAVKYTKQRVQFGKPIAKF
QNTQFTIADMETKVCAARGLVYDAAQKRDAGMRVAQESAMAKYYASEIANEVAYKALQ
LHGGYGFIKDYEIERMYRDARIVSIYEGTSEVQKMVISSNVLK"
misc_feature 455853..456983
/locus_tag="CDBI1_01960"
/note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region:
CaiA; COG1960"
/db_xref="CDD:32143"
misc_feature 455868..456983
/locus_tag="CDBI1_01960"
/note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
/db_xref="CDD:209100"
misc_feature order(456123..456125,456213..456215,456219..456221,
456312..456314,456318..456320,456927..456935,
456939..456941,456945..456947)
/locus_tag="CDBI1_01960"
/note="active site"
/db_xref="CDD:173838"
gene 457019..457804
/locus_tag="CDBI1_01965"
/db_xref="GeneID:12216299"
CDS 457019..457804
/locus_tag="CDBI1_01965"
/note="'COG2086 Electron transfer flavoprotein, beta
subunit'"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein subunit beta"
/protein_id="YP_006197559.1"
/db_xref="GI:384359707"
/db_xref="GeneID:12216299"
/translation="MKILVCVKQVPDTNEVRINKETGTLIRDGVPSILNPDDANALEE
ALKIKDEHDDVTITVITMGPPQADFMLRECLAMGADDAILLSDRAFGGADTWATSNTI
AAGISKVGDYDIIFAGRQAIDGDTAQVGPQIAEKLDIPQVTYVQDFKIEGKDIIVQRQ
LEDGYELIKVSTPVLLTAVKELNTPRYMSVDKIVKAYKHDVKVWTIDDLDVNKEEVGL
KASPTKVFRSFTPEPRGKGEILEGKADEIASKIIIGLKQKHII"
misc_feature 457022..457633
/locus_tag="CDBI1_01965"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_beta; cd01714"
/db_xref="CDD:30169"
misc_feature order(457034..457039,457121..457123,457130..457132,
457202..457204,457367..457372,457376..457381,
457394..457405)
/locus_tag="CDBI1_01965"
/note="Ligand binding site [chemical binding]; other site"
/db_xref="CDD:30169"
misc_feature 457094..457573
/locus_tag="CDBI1_01965"
/note="Electron transfer flavoprotein domain; Region: ETF;
pfam01012"
/db_xref="CDD:201550"
gene 457823..458860
/locus_tag="CDBI1_01970"
/db_xref="GeneID:12216300"
CDS 457823..458860
/locus_tag="CDBI1_01970"
/note="'COG2025 Electron transfer flavoprotein, alpha
subunit'"
/codon_start=1
/transl_table=11
/product="electron transfer flavoprotein, alpha
subunit/FixB family protein"
/protein_id="YP_006197560.1"
/db_xref="GI:384359708"
/db_xref="GeneID:12216300"
/translation="MNDIKDLSSYKNVWIFAEQREGKIAPVVIELLGEGRKLAKEVDA
ELCAILLGKDVDGLAKELITFGADKVYVADDALLEKYTTDAYTKVIKDAIDEIKPEIM
LFGATHIGRDLAPRIASRVGTGLTADCTKLEIDPEDKKIKQTRPAFGGNIMATIICPN
HRPQMSTVRPGVMDKAEKDETRTGEVIALDYKITQDDIRTTVLETVKTKKDLVSLTDA
NVIVSGGLGLGGPEGFEMLKKLADKLGGVVGSSRAAVDAGWIDHSHQVGQTGTTVKPN
LYIACGISGAIQHLAGMQSSDFIIAINKNPAAPILEIADYGVVGDLHEIVPMLIEKLD
SVDDLLEAIKA"
misc_feature 457853..458827
/locus_tag="CDBI1_01970"
/note="Electron transfer flavoprotein, alpha subunit
[Energy production and conversion]; Region: FixB; COG2025"
/db_xref="CDD:32208"
misc_feature 457856..458368
/locus_tag="CDBI1_01970"
/note="The electron transfer flavoprotein (ETF) serves as
a specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an...; Region:
ETF_alpha; cd01715"
/db_xref="CDD:30170"
misc_feature 458459..458713
/locus_tag="CDBI1_01970"
/note="Electron transfer flavoprotein FAD-binding domain;
Region: ETF_alpha; pfam00766"
/db_xref="CDD:189709"
gene 459343..460974
/locus_tag="CDBI1_01975"
/db_xref="GeneID:12216301"
CDS 459343..460974
/locus_tag="CDBI1_01975"
/note="'COG3829 Transcriptional regulator containing PAS,
AAA-type ATPase, and DNA-binding domains'"
/codon_start=1
/transl_table=11
/product="sigma-54-dependent transcriptional regulator"
/protein_id="YP_006197561.1"
/db_xref="GI:384359709"
/db_xref="GeneID:12216301"
/translation="MDNNLIGLIEHVENPAILCKESGEIIYCNHLIDSIFSFLDIKKP
RNINELDSNFDKTEILTDSKKKIAFRELRMTAHIYNMKDNNNENNIVYLFEKSLISDK
VIEDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEEPI
ILNMLKVKKKIYRNIVYPDGKLIAYTAVPRWDSKGKLTGGVLTGRDISRVIKLESQIK
YSDISEDTEYISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRR
DKPFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKGLFEEANGGTIFLDEIGELP
MQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSV
IPVKIPPLRERKEDIVPLVNYFLKLYNEKYNREVEVSPKVIELLEEYSWPGNIRELKN
IIERFVVLSAKNVIGEDEFNMLINLDMIDNETDDLSPIVVNGIMNLNDAYKIVDQIMI
SKAINKYGSITKAAEVIGIYPSTIHRKIKSGHIHV"
misc_feature 459697..459966
/locus_tag="CDBI1_01975"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature <460009..460971
/locus_tag="CDBI1_01975"
/note="Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms]; Region: AtoC; COG2204"
/db_xref="CDD:32386"
misc_feature 460045..460539
/locus_tag="CDBI1_01975"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 460108..460131
/locus_tag="CDBI1_01975"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(460111..460134,460324..460326,460450..460452)
/locus_tag="CDBI1_01975"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 460312..460329
/locus_tag="CDBI1_01975"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 460507..460509
/locus_tag="CDBI1_01975"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature 460849..460953
/locus_tag="CDBI1_01975"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:214025"
gene complement(461109..462035)
/locus_tag="CDBI1_01980"
/db_xref="GeneID:12216302"
CDS complement(461109..462035)
/locus_tag="CDBI1_01980"
/note="COG0191 Fructose/tagatose bisphosphate aldolase"
/codon_start=1
/transl_table=11
/product="putative fructose-bisphosphate aldolase"
/protein_id="YP_006197562.1"
/db_xref="GI:384359710"
/db_xref="GeneID:12216302"
/translation="MALITTKEMFKKAYEGGFAIGAFNISDLEQLQGVLKAAKAKNSY
VMIQASMSAVKYAGPHTLVEMVKAASDEIGVDVALHLDHGPNMDAIKTCIDAGFSSVM
IDGSHFDFEENVRITKEAVEYAHSKGVVVEAELGVLAGTEDDVTSDVHKYTQPAEAVE
FVERTGVDSLAIAIGTSHGAFKFKGEAKLRFDILEEIQSKLPGFPIVLHGASAVDQNA
VATCNEFGGNIAGAKGVPVDMLRKASSMAVCKINMDTDLRLAMTAAIRKFLAENPKEF
DPRKYIGAGRDAIQAVVESKIDDVLGSANSIN"
misc_feature complement(461121..462020)
/locus_tag="CDBI1_01980"
/note="Tagatose-1,6-bisphosphate (TBP) aldolase and
related Type B Class II aldolases. TBP aldolase is a
tetrameric class II aldolase that catalyzes the reversible
condensation of dihydroxyacetone phosphate with
glyceraldehyde 3-phsophate to produce tagatose 1; Region:
TBP_aldolase_IIB; cd00947"
/db_xref="CDD:29573"
misc_feature complement(461121..462014)
/locus_tag="CDBI1_01980"
/note="fructose-bisphosphate aldolase; Provisional;
Region: PRK09197"
/db_xref="CDD:181692"
misc_feature complement(order(461229..461231,461238..461240,
461250..461252,461259..461264,461268..461273,
461610..461612,461829..461834,461841..461843,
461853..461855,461865..461873,461880..461882,
461940..461942,461949..461957))
/locus_tag="CDBI1_01980"
/note="intersubunit interface [polypeptide binding]; other
site"
/db_xref="CDD:29573"
misc_feature complement(order(461271..461276,461280..461282,
461400..461402,461406..461411,461493..461495,
461499..461507,461787..461792))
/locus_tag="CDBI1_01980"
/note="active site"
/db_xref="CDD:29573"
misc_feature complement(order(461409..461411,461502..461504,
461787..461789))
/locus_tag="CDBI1_01980"
/note="zinc binding site [ion binding]; other site"
/db_xref="CDD:29573"
misc_feature complement(order(461400..461402,461406..461408,
461493..461495,461499..461501,461505..461507))
/locus_tag="CDBI1_01980"
/note="Na+ binding site [ion binding]; other site"
/db_xref="CDD:29573"
gene 462365..462694
/locus_tag="CDBI1_01985"
/db_xref="GeneID:12216303"
CDS 462365..462694
/locus_tag="CDBI1_01985"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197563.1"
/db_xref="GI:384359711"
/db_xref="GeneID:12216303"
/translation="MPQIKIRGINENDICKISKKMINDLVEAVKCPRDYFEIECIKSV
AIRDGKIADVYPFVEVAWFDRGQEVQDIVARIITDSIRNNLDVESMDLAFTVFEKEKY
YENGEHF"
misc_feature 462368..462688
/locus_tag="CDBI1_01985"
/note="Domain of unknown function (DUF1904); Region:
DUF1904; pfam08921"
/db_xref="CDD:204095"
gene 462694..462906
/locus_tag="CDBI1_01990"
/db_xref="GeneID:12216304"
CDS 462694..462906
/locus_tag="CDBI1_01990"
/note="COG1187 16S rRNA uridine-516 pseudouridylate
synthase and related pseudouridylate synthases"
/codon_start=1
/transl_table=11
/product="pseudouridine synthase"
/protein_id="YP_006197564.1"
/db_xref="GI:384359712"
/db_xref="GeneID:12216304"
/translation="MAKKQRIDKILSNLGYGSRSEIKKYCKQGSVVVNGSEVSNPGTQ
VDTENDEILFNGEEVIYREYIYLIKK"
misc_feature 462706..462849
/locus_tag="CDBI1_01990"
/note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
domain surface is populated by conserved, charged residues
that define a likely RNA-binding site; Found in stress
proteins, ribosomal proteins and tRNA synthetases; This
may imply a hitherto unrecognized...; Region: S4; cl09940"
/db_xref="CDD:209103"
gene 463545..464663
/locus_tag="CDBI1_01995"
/db_xref="GeneID:12216305"
CDS 463545..464663
/locus_tag="CDBI1_01995"
/note="COG0675 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase-like protein b"
/protein_id="YP_006197565.1"
/db_xref="GI:384359713"
/db_xref="GeneID:12216305"
/translation="MIAVEKAYKFRMYPNKKQQELINKTFGCCRFVYNKYLAKRIEVY
KNDKETFTYKQCSSDLTNLKKELKWLKEPDKFSLQNALKDLDNAYKKFFKEKAGFPKF
KSKKINRFSYKTNFTNGNIMYCGQHIKLPKLGMVKIRDKQVPKGRILNATISKEPSGR
YYVSLCCTDVDIEVFENTNNQIGLDLGIKEFCISSCGEFIENPKYLKKSLNKLAKLQR
ELSRKTIGSLNRNKARLKVARLQEHIANQRNDFLQKLSTKLIKENDIICIEDLQVKNM
IRNCKLSRLISDVSWSEFIRQLEYKANWHGRQIVKVGKFFASSQICNKCGYKNEEVKD
LSIREWICPSCNETHDRDINASINILKEGLRLITTQNK"
misc_feature 463554..464654
/locus_tag="CDBI1_01995"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG0675"
/db_xref="CDD:31019"
misc_feature 463560..463691
/locus_tag="CDBI1_01995"
/note="Helix-turn-helix domain; Region: HTH_OrfB_IS605;
pfam12323"
/db_xref="CDD:204881"
misc_feature 463749..464372
/locus_tag="CDBI1_01995"
/note="Probable transposase; Region: OrfB_IS605;
pfam01385"
/db_xref="CDD:189964"
misc_feature 464280..464480
/locus_tag="CDBI1_01995"
/note="transposase, IS605 OrfB family, central region;
Region: tspaseT_teng_C; TIGR01766"
/db_xref="CDD:200129"
gene 464782..465300
/locus_tag="CDBI1_02000"
/db_xref="GeneID:12216306"
CDS 464782..465300
/locus_tag="CDBI1_02000"
/note="COG1187 16S rRNA uridine-516 pseudouridylate
synthase and related pseudouridylate synthases"
/codon_start=1
/transl_table=11
/product="pseudouridine synthase"
/protein_id="YP_006197566.1"
/db_xref="GI:384359714"
/db_xref="GeneID:12216306"
/translation="MNKPDGYISATTDKYDPTVLDLIDLSYLAFEPFPVGRLDKDTEG
LLVLTNDGKLSHRVLSPKKHVPKTYYAKIDGVVTEEDVEAFLEGVVLDDGYKTMPSQL
NILKSDDESEIELTIHEGKFHQVKRMFESVGKKVVYLKRLSMGNLKLDESLELGEYRE
LTDEEVKLIEER"
misc_feature 464782..465279
/locus_tag="CDBI1_02000"
/note="Pseudouridine synthase, Escherichia coli RsuA like;
Region: PseudoU_synth_RsuA; cd02553"
/db_xref="CDD:211327"
misc_feature 464884..465270
/locus_tag="CDBI1_02000"
/note="pseudouridine synthase; Region: TIGR00093"
/db_xref="CDD:188020"
misc_feature order(464887..464898,465157..465159)
/locus_tag="CDBI1_02000"
/note="active site"
/db_xref="CDD:211327"
misc_feature order(464986..464988,465148..465159)
/locus_tag="CDBI1_02000"
/note="uracil binding [chemical binding]; other site"
/db_xref="CDD:211327"
gene 465333..466688
/locus_tag="CDBI1_02005"
/db_xref="GeneID:12216307"
CDS 465333..466688
/locus_tag="CDBI1_02005"
/note="COG2265 SAM-dependent methyltransferases related to
tRNA (uracil-5-)-methyltransferase"
/codon_start=1
/transl_table=11
/product="putative tRNA (uracil-5-)-methyltransferase"
/protein_id="YP_006197567.1"
/db_xref="GI:384359715"
/db_xref="GeneID:12216307"
/translation="MKKKDVIEFEVDKMEFGGTSLSQVGDRVIHMKGGISGQKVRAGV
KKVRSKKAEVKMIELLENSPLETEETCKHFRECGGCTLLSVPYEKQLEIKEKQVMDLF
LKQDLFGFQFLGIEGSPENKYYRNKMEYTFGDEVKNGPLTLGLHKKGKHIDIQTVEEC
MLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRHLVVRKGIHTNEIMVNIVTSSQ
EDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCDELRVLYGRDYIQEEILGLK
FKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFDLYSGTGSIGQVMAGAAKKVYG
IEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLKDKPDLIIVDPPRPGIHKDAI
RDICGFGAKEIVYISCNPKSLVVDLVDFKGYGYEIKMVKCMDMFPNTPHCETVVKLIR
E"
misc_feature 465339..466664
/locus_tag="CDBI1_02005"
/note="SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis]; Region: TrmA; COG2265"
/db_xref="CDD:32446"
misc_feature <466476..466682
/locus_tag="CDBI1_02005"
/note="S-adenosylmethionine-dependent methyltransferases
(SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
that use S-adenosyl-L-methionine (SAM or AdoMet) as a
substrate for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
cl16911"
/db_xref="CDD:214256"
gene complement(466770..466985)
/locus_tag="CDBI1_02010"
/db_xref="GeneID:12216308"
CDS complement(466770..466985)
/locus_tag="CDBI1_02010"
/note="COG0582 Integrase"
/codon_start=1
/transl_table=11
/product="integrase"
/protein_id="YP_006197568.1"
/db_xref="GI:384359716"
/db_xref="GeneID:12216308"
/translation="MIFDILIITTLEEYTLYFKNPDTMLLENGTNIKDIQHILGHAKT
STTMDTYLHVTNNMRNQMVNIFEIIVE"
misc_feature complement(466809..>466919)
/locus_tag="CDBI1_02010"
/note="DNA breaking-rejoining enzymes, C-terminal
catalytic domain. The DNA breaking-rejoining enzyme
superfamily includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; Region:
DNA_BRE_C; cl00213"
/db_xref="CDD:211431"
gene 467012..467167
/locus_tag="CDBI1_02015"
/db_xref="GeneID:12216309"
CDS 467012..467167
/locus_tag="CDBI1_02015"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197569.1"
/db_xref="GI:384359717"
/db_xref="GeneID:12216309"
/translation="MFSKNEILKKLIEEYDVKTTTDIQDMLKDLFTNTIHQIFPLSNF
NGLNIIY"
gene 467211..468245
/locus_tag="CDBI1_02020"
/db_xref="GeneID:12216310"
CDS 467211..468245
/locus_tag="CDBI1_02020"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197570.1"
/db_xref="GI:384359718"
/db_xref="GeneID:12216310"
/translation="MFKKKLIAVAMSITMISVGSFSYAHSGRTDSSGGHRDNKNKSGL
GSYHYHCGGYPAHLHNNGGCPYTGGGSSSGTTTSVNNEEKQKRSVGEKGYNQGYEDGY
KGNYSSSNYSGDYSDTYESKYSEGYEKGKAKLEEEEKVAKETGYNLGLTGAKSNNTYE
KEVLKNAYDTGYSTGYNEYKTKKIEEYKAKGIEDSNKDKEKMTFEENIDSEFIDAYNN
AYDEIQEQLKNDYTTQGFESAIKGERFDTSTIGNVKYANWFKEGYDNGKVKLPKAKES
VYNQGYNEEDFSIPYEMKSIETKLKGVYDEGLEKREEEKSRNATYGVGAGTAAVVAGV
VYKNKKRKKI"
gene 468332..468535
/locus_tag="CDBI1_02025"
/db_xref="GeneID:12216311"
CDS 468332..468535
/locus_tag="CDBI1_02025"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197571.1"
/db_xref="GI:384359719"
/db_xref="GeneID:12216311"
/translation="MGFNFRKSINLGGGLKLNLGKKSVGISAGVKGARVSVNSKGRKS
ATLSIPGTGISYTKTSTKKRKPK"
misc_feature 468338..468505
/locus_tag="CDBI1_02025"
/note="Protein of unknown function (DUF4236); Region:
DUF4236; pfam14020"
/db_xref="CDD:206190"
gene 468706..469866
/locus_tag="CDBI1_02030"
/db_xref="GeneID:12216312"
CDS 468706..469866
/locus_tag="CDBI1_02030"
/note="COG2247 Putative cell wall-binding domain"
/codon_start=1
/transl_table=11
/product="cell surface protein"
/protein_id="YP_006197572.1"
/db_xref="GI:384359720"
/db_xref="GeneID:12216312"
/translation="MKLSKTLLAIGMSVSLLIASCPTSNALSSINSIKGTNKYETAGL
IADKQNYDIAILINSENGLSDGLSASGLSGAKNAPILLTKKDTIPSETLKRLEKVKEV
YLIGGKNSIGASVQKILSDKKISINRISGTDRIDTSHKVAKEIGRVSTVKKVILTNAF
KGEPDAMSVASIAVRDKSPIVLTDGNTTSFATDGLETYAIGGKVSMSDKLINETKATR
IGGVDRYDTNKQIINKFYNGSKEFYIASGTDLVYSLVGSTIAQKTPIVLVGNGSNKSI
LKNASKITAIGNIDDVIIKQCLNITNNVGDSNTGIVKDTNSNNTNKPSNEPSSNNPGL
TDKSTVYVTPNGKSYHLTKNCSTLKRSKTINKVTLKQAKSQGKIDPCNVCVK"
misc_feature 468802..469056
/locus_tag="CDBI1_02030"
/note="Putative cell wall binding repeat 2; Region:
CW_binding_2; pfam04122"
/db_xref="CDD:202898"
misc_feature 469087..469344
/locus_tag="CDBI1_02030"
/note="Putative cell wall binding repeat 2; Region:
CW_binding_2; pfam04122"
/db_xref="CDD:202898"
misc_feature 469354..469566
/locus_tag="CDBI1_02030"
/note="Putative cell wall binding repeat 2; Region:
CW_binding_2; pfam04122"
/db_xref="CDD:202898"
gene complement(470397..471296)
/locus_tag="CDBI1_02035"
/db_xref="GeneID:12216313"
CDS complement(470397..471296)
/locus_tag="CDBI1_02035"
/note="COG2801 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="integrase, catalytic region"
/protein_id="YP_006197573.1"
/db_xref="GI:384359721"
/db_xref="GeneID:12216313"
/translation="MVITLSKNEDKYKAIQSLFNEKKASLIQLCEIAKVNRSGYYKWL
NRDKSNLELENIKLATLITKIYEEKKGVFGSLRMTLQLNREYKLNVNHKRVYRLMRAV
GLRSICRKKKFSYVKCTQEVIAENVLNRKFSADKTSQKWLTDVTEFKLTDGTKAYLSA
ILDLGDRSIVSYVIGKSNNNNLVFETFNKAIEVYPNAKPIFHSDRGYQYTSRVFKSKL
LTQGMIQSMSRVGHCIDNAPMEGFWGILKVEMYYLRKFDTYEQLVKAIDDYIYYYNNF
RYQKRLNSMSPLEFRKYLSTEIA"
misc_feature complement(470430..471194)
/locus_tag="CDBI1_02035"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:177368"
misc_feature complement(470961..471128)
/locus_tag="CDBI1_02035"
/note="HTH-like domain; Region: HTH_21; pfam13276"
/db_xref="CDD:205456"
misc_feature complement(470547..470882)
/locus_tag="CDBI1_02035"
/note="Integrase core domain; Region: rve; pfam00665"
/db_xref="CDD:201381"
misc_feature complement(470421..470579)
/locus_tag="CDBI1_02035"
/note="Integrase core domain; Region: rve_2; pfam13333"
/db_xref="CDD:205513"
gene complement(471290..471961)
/locus_tag="CDBI1_02040"
/db_xref="GeneID:12216314"
CDS complement(471290..471961)
/locus_tag="CDBI1_02040"
/note="COG2963 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197574.1"
/db_xref="GI:384359722"
/db_xref="GeneID:12216314"
/translation="MSKTKVSSEQKIEAIESYLKGENSVIKIMEELNIGKRTFREWMR
NYETFGNDGLIKQSHKSCYSKEFKLNAIESYLNGEGSYDTISKKYKMRSVHPLKAWVK
EYNLHKVIKETPKGGLFMETRKTTLDERAEIVKDCIEHGLNYNLIAKKYFVSYSQVRR
WTLKYKENGIDALEDRRGKSKKEDELTQLDEIKLELKIVKAEKHKLQLENEFLKKLKI
IERGW"
misc_feature complement(471782..471934)
/locus_tag="CDBI1_02040"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:205696"
misc_feature complement(471440..471775)
/locus_tag="CDBI1_02040"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG2963"
/db_xref="CDD:32783"
misc_feature complement(471419..471577)
/locus_tag="CDBI1_02040"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:205696"
gene 473035..474435
/locus_tag="CDBI1_02045"
/db_xref="GeneID:12216315"
CDS 473035..474435
/locus_tag="CDBI1_02045"
/note="'COG3829 Transcriptional regulator containing PAS,
AAA-type ATPase, and DNA-binding domains'"
/codon_start=1
/transl_table=11
/product="arginine utilization sigma-54 dependent
regulatory protein"
/protein_id="YP_006197575.1"
/db_xref="GI:384359723"
/db_xref="GeneID:12216315"
/translation="MNQEIFFKIMNEILENIDEGVHFVNKDGKTIIYNNSVQKMEKMN
RHDILANSFFDIVNKMKINRSTLLEVLEKREVIKDNIQKYLDKNGKEITAINTTIPID
IKGEFVGALEISKNMTTIENLLNRNYKKNLVNKVSSRQKKGYEFDDILGESNLIKEAI
EKSKKACKSDASVFIYGETGTGKELFSQSIHYGSNRRNYPFIAQNCAALPESLFEGIL
FGTSKGGFTGAIDRPGLFEQANKGTLLLDEINSMPIMLQAKLLRVLQEGYVRRVGGTK
DIPIDVRIIATTNESPKVILNEHKMRKDLYYRLNIIHIKIPPLRDRKEDILLLCKKFI
SKYNKKLNKKVVGISDEAIKILKNYDWQGNIRELENIIYCTMSMMEDEVQIETSMINL
NDYYNLKENKESNNYSLNDLEGKTLSKIISEIEEKYIYESLEKASYNITKAASILGMN
RQNLQYKIKKYNIKIL"
misc_feature 473101..473388
/locus_tag="CDBI1_02045"
/note="PAS domain; Region: PAS_9; pfam13426"
/db_xref="CDD:205604"
misc_feature 473506..473988
/locus_tag="CDBI1_02045"
/note="The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC; Region: AAA; cd00009"
/db_xref="CDD:99707"
misc_feature 473563..473586
/locus_tag="CDBI1_02045"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(473566..473589,473773..473775,473899..473901)
/locus_tag="CDBI1_02045"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 473761..473778
/locus_tag="CDBI1_02045"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
misc_feature 473956..473958
/locus_tag="CDBI1_02045"
/note="arginine finger; other site"
/db_xref="CDD:99707"
misc_feature <474349..474417
/locus_tag="CDBI1_02045"
/note="Bacterial regulatory protein, Fis family; Region:
HTH_8; pfam02954"
/db_xref="CDD:202485"
gene 474691..475758
/locus_tag="CDBI1_02050"
/db_xref="GeneID:12216316"
CDS 474691..475758
/locus_tag="CDBI1_02050"
/note="COG3804 Uncharacterized conserved protein related
to dihydrodipicolinate reductase"
/codon_start=1
/transl_table=11
/product="dihydrodipicolinate reductase"
/protein_id="YP_006197576.1"
/db_xref="GI:384359724"
/db_xref="GeneID:12216316"
/translation="MRKVRVGIWGFGAMGIGMANMILKKEGIEIVSVCSRSTSGKSMY
DVLGIERGERPEVIINKNYEEVFREKSVDVVLLATDSFTKKAFDKIIFLLNRKINVIS
TAEQMAYPQADDADLAKKMDEVAKENGVSILGTGINPGFVLDLLVLALSGTCEEVTSI
KAKRVNDLSPFGKSVMEEQGVGVTREEFIKGVEDKTIAGHVGFVESINMIADGLGWKL
DKIEQTKEPIMTTVDRKSKYGEALAGNVAGCRQCGYGYVNGDVLIEMEHPQQIIPEVE
GIKTGDYVSIKGIPNIDLQINPEIPGGVGTYAMIVNSIPLIINARPGLKTMLDIPVPR
AIMGDIRNQIEVELEEESKAN"
misc_feature 474700..475692
/locus_tag="CDBI1_02050"
/note="Uncharacterized conserved protein related to
dihydrodipicolinate reductase [Function unknown]; Region:
COG3804"
/db_xref="CDD:33598"
misc_feature 474700..475080
/locus_tag="CDBI1_02050"
/note="Oxidoreductase family, NAD-binding Rossmann fold;
Region: GFO_IDH_MocA; pfam01408"
/db_xref="CDD:201778"
gene 475855..476163
/locus_tag="CDBI1_02055"
/db_xref="GeneID:12216317"
CDS 475855..476163
/locus_tag="CDBI1_02055"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197577.1"
/db_xref="GI:384359725"
/db_xref="GeneID:12216317"
/translation="MDAKINDWVIIHNIVLTPEERAPQVPEDTKKVSLEMWVKGFIQS
DASIGDLVEVKTITGRLVKGNLLKVNPYYTHDYGKCIPELLQIGIQAKEILFGGVYNE
"
gene 476156..477586
/locus_tag="CDBI1_02060"
/db_xref="GeneID:12216318"
CDS 476156..477586
/locus_tag="CDBI1_02060"
/note="COG0133 Tryptophan synthase beta chain"
/codon_start=1
/transl_table=11
/product="pyridoxal-phosphate dependent enzyme"
/protein_id="YP_006197578.1"
/db_xref="GI:384359726"
/db_xref="GeneID:12216318"
/translation="MNNSTSIKDMSYQAVMGRNNEIMKNAIGLDYSSFEQEGIGFDYE
KMMSETGYTLQDIEAIQSQYAVGNTPLIELKNLTKLARKCAKEGKGAKIFVKDEAMNA
SGSFKARRAATAVYHAKQMGYKGVIAATSGNYGAAVASQAAMQGLKCIIVQECYDSNG
VGQPEIIEKARKCEAYGAEVVQLTVGPELFYTFLVLLEETGYFNASLYSPFGIAGVET
LGYELAIQFREKYKKDPDIVVCTNAGGGNLTGTARGLIKAGSINTKVVGASVDLKGLH
MASDNQFNKKSFTTGHTGFGIPYCTWPDRSDVPRSAARPLRYMDRYVLVKQGEVFYTT
ELLAQLEGIERGPAGNTSLAAAFSLAQELDEDKVIVVQETEYTGAGKHICPQLTFARE
NGIDIKFGNPREEIAGVNLILPERPELLKCVDIDMNKIRKSFIKNCISNNHIDNIDKL
SNRDIEFLMEEVKSSRDFVVDVLNNL"
misc_feature 476345..477268
/locus_tag="CDBI1_02060"
/note="Pyridoxal-phosphate dependent enzyme; Region: PALP;
pfam00291"
/db_xref="CDD:201135"
misc_feature 476360..477268
/locus_tag="CDBI1_02060"
/note="Tryptophan synthase beta superfamily (fold type
II); this family of pyridoxal phosphate (PLP)-dependent
enzymes catalyzes beta-replacement and beta-elimination
reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan...; Region: Trp-synth-beta_II; cd00640"
/db_xref="CDD:107202"
misc_feature order(476471..476476,476552..476554,476885..476899,
477197..477199)
/locus_tag="CDBI1_02060"
/note="pyridoxal 5'-phosphate binding pocket [chemical
binding]; other site"
/db_xref="CDD:107202"
misc_feature 476474..476476
/locus_tag="CDBI1_02060"
/note="catalytic residue [active]"
/db_xref="CDD:107202"
gene 477664..478038
/locus_tag="CDBI1_02065"
/db_xref="GeneID:12216319"
CDS 477664..478038
/locus_tag="CDBI1_02065"
/codon_start=1
/transl_table=11
/product="D-ornithine aminomutase S component"
/protein_id="YP_006197579.1"
/db_xref="GI:384359727"
/db_xref="GeneID:12216319"
/translation="MKKREDDFEVRRKHLQELSDDELKERFWNLATQIVEPMIELGKK
NTTPSIERSVLLRMGFSSLEVKPILEGVMERGLIGKGAGHVVYKLAKSKNITVREAGL
LLVKGEYWDEVTCLFREGVESC"
gene 478032..480236
/locus_tag="CDBI1_02070"
/db_xref="GeneID:12216320"
CDS 478032..480236
/locus_tag="CDBI1_02070"
/note="COG0422 Thiamine biosynthesis protein ThiC"
/codon_start=1
/transl_table=11
/product="D-ornithine aminomutase E component"
/protein_id="YP_006197580.1"
/db_xref="GI:384359728"
/db_xref="GeneID:12216320"
/translation="MLKENKKLDIDYILKDLDKYKPKRRGWVWREHLENLEMGPFKYK
DCTKPLKKSVGLPSSKYFNNIDPQPSPVITTEIASGRFEDDIRRMRMAAHHGADHLMV
IRTAGQSHFDGLIEGTPQGIGGVPITRKQVRAQRKALDFIEEEVGRPINYHSYVSGVA
GPEVAVMFAEEGVNGAHQDPQYNVLYRNINMVRSFVDACEAKKIMAFANIAQIDGAHN
ANATAREAWKVMPELMVQHALNSIFSEKIGIDKSNICLSTVPPTAPPAPCLRIDLPYA
VALRELFSDYKMRAQMNTKYMESSTREATVTHVLNLLTSVLTRADIQSTITPDEGRNV
PWHIYNIEACDTAKQALVGMDGLMDMIELKDVGELRDKARELKERAVLYMEEISEVGG
YFESVEQGFFVDSGNYPERNGDGISRKIKGGVGEGTVYEREEDYLAPVTAHFGYNNVA
QYDENAIDNPSMLIDGCTFENPDKIIYIDELDDFDNVENRLKESYEYRNGTKIKPEME
WCADGIVMITMMLPTDKRTAEFAALEFVKKMNLQEIEVISREVMHESEGTRIEVKGRV
PFDIDLNNLVIPEEPKVLTDEEIRADIEEKPMKIVSATVGEDEHSVGLREIIDIKHGG
IEKYGIECHYLGTSVPVEKLVDAAIELNADAILASTIISHDDIHYKNMKKLHDYCVEK
GIRDKVMIACGGTQVTPEIAVEQGIDAGFGRNSKGIHVATFLVEKRREMSNK"
misc_feature <478212..479348
/locus_tag="CDBI1_02070"
/note="D-Lysine 5,6-aminomutase alpha subunit; Region:
Lys-AminoMut_A; pfam09043"
/db_xref="CDD:117609"
misc_feature 479826..480194
/locus_tag="CDBI1_02070"
/note="B12 binding domain (B12-BD). This domain binds
different cobalamid derivates, like B12 (adenosylcobamide)
or methylcobalamin or methyl-Co(III)
5-hydroxybenzimidazolylcobamide, it is found in several
enzymes, such as glutamate mutase, methionine synthase...;
Region: B12-binding; cd02067"
/db_xref="CDD:30205"
misc_feature order(479850..479870,479880..479882,480000..480008,
480012..480020,480114..480116,480162..480164,
480171..480173,480180..480182)
/locus_tag="CDBI1_02070"
/note="B12 binding site [chemical binding]; other site"
/db_xref="CDD:30205"
misc_feature 479859..479861
/locus_tag="CDBI1_02070"
/note="cobalt ligand [ion binding]; other site"
/db_xref="CDD:30205"
gene 480236..481645
/locus_tag="CDBI1_02075"
/db_xref="GeneID:12216321"
CDS 480236..481645
/locus_tag="CDBI1_02075"
/codon_start=1
/transl_table=11
/product="component of D-ornithine aminomutase"
/protein_id="YP_006197581.1"
/db_xref="GI:384359729"
/db_xref="GeneID:12216321"
/translation="MENSKVSLKIDVLVAEIGSTTTVVNAFHDINTNNPIFLGQGQAP
TTVFEGGDVRNGLSGAIKDLANKLSVDDIEYNDMFATSSAAGGLKMTVHGLVYDMTVK
AAKEAALGAGAVIRQITSGRIKRTDLNKIKEINPNIILIAGGVDYGERDTAIYNAEMI
ASMNLGIPVIYAGNVENQEEIRLIFEDTNYKLYITENVYPKIDLLNIEPTRRIIQSVF
EEHITTAPGMKYIKEMVNENITPTPGAVMEASKLLYKNIGDLLTLDVGGATTDVHSVT
DGSDYINKILVNPEPTAKRSVEGDLGVYVNMKNIVEVIGKENLQSELYIDIDAVIENY
PPIPKSKEEILFVERLTKEAVVKAMLRHSGKIRNIYGTTGKVKIAEGKDLTEVRYIVG
TGGALTRLPSRIEILDNMLKYNKNNELLFPKEKTKILIDNDYIMASMGVLSKKYEEAS
LKLLLKSLNFEEERLCILG"
misc_feature 480266..481558
/locus_tag="CDBI1_02075"
/note="MutL protein; Region: MutL; pfam13941"
/db_xref="CDD:206112"
gene 481630..482694
/locus_tag="CDBI1_02080"
/db_xref="GeneID:12216322"
CDS 481630..482694
/locus_tag="CDBI1_02080"
/note="COG3457 Predicted amino acid racemase"
/codon_start=1
/transl_table=11
/product="amino acid racemase"
/protein_id="YP_006197582.1"
/db_xref="GI:384359730"
/db_xref="GeneID:12216322"
/translation="MYPRLEIDIEKLKHNAKLISQMCHERSIKISFVTKSFCAQKEIV
EEICSEGIDHIADSRIQNLKKLQDINLPKILIRIPMLSELEEVINYCDISFNSELETI
KKLNELCESKNIIHKIVLMFDLGDLREGYFYEEDFFNNVREIVRLKNIEIIGIATNLT
CYGAIIPSRENIGRLVSIAKRMEEKFGINLEIVSGGNSSSIHLLINNNMPEGITNLRI
GESILLGRETAYGENINGTYQDAFKLICQVVECKEKPSVPIGEIGVDAFRNKPVYEDK
GILKRAIIAIGKQDINIDSLIPIDTDIKILGASSDHMILDVSNTKYDYKLGDNLEFLL
TYGGIMSSSTSKYVSKKIIV"
misc_feature 481633..482688
/locus_tag="CDBI1_02080"
/note="Predicted amino acid racemase [Amino acid transport
and metabolism]; Region: COG3457"
/db_xref="CDD:33260"
misc_feature 481633..482688
/locus_tag="CDBI1_02080"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Alanine Racemase-like 1; Region:
PLPDE_III_AR_like_1; cd06815"
/db_xref="CDD:143490"
misc_feature order(481633..481635,481732..481734,481738..481740,
481801..481806,481810..481815,481831..481833,
481876..481878,481921..481923,481927..481929,
481939..481941,482008..482019,482374..482385,
482470..482472,482476..482478,482482..482484,
482491..482496,482671..482673)
/locus_tag="CDBI1_02080"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:143490"
misc_feature order(481726..481728,481732..481734,481795..481797,
481858..481860,481990..481992,482011..482013,
482101..482103,482218..482223,482278..482289,
482491..482493)
/locus_tag="CDBI1_02080"
/note="active site"
/db_xref="CDD:143490"
misc_feature order(481726..481728,481732..481734,481795..481797,
481858..481860,481990..481992,482101..482103,
482218..482223,482278..482289)
/locus_tag="CDBI1_02080"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]; other site"
/db_xref="CDD:143490"
misc_feature order(481732..481734,482011..482013,482101..482103,
482287..482289)
/locus_tag="CDBI1_02080"
/note="substrate binding site [chemical binding]; other
site"
/db_xref="CDD:143490"
misc_feature 481732..481734
/locus_tag="CDBI1_02080"
/note="catalytic residue [active]"
/db_xref="CDD:143490"
gene 482724..484145
/locus_tag="CDBI1_02085"
/db_xref="GeneID:12216323"
CDS 482724..484145
/locus_tag="CDBI1_02085"
/note="COG1757 Na+/H+ antiporter"
/codon_start=1
/transl_table=11
/product="Na+/H+ antiporter"
/protein_id="YP_006197583.1"
/db_xref="GI:384359731"
/db_xref="GeneID:12216323"
/translation="MKERECRKASLFDAMIPITCLILFLSLGVLVYGSSPHVPLIGAA
AVAGLVAVYRLGFKWKELELSMFNSIKMAMQAILIIIIIGVLIGTWIVSGVVPCMIYW
GLKILSPNIFLVASTLVCAIVSLATGSSWSTMGTVGVALLGIGQSLGMPIGLIVGSII
SGAYFGDKLSPLSETTNLAPAMAGTDLFTHIKYMLYSTIPSLLICLVIYGVIGMKYSG
QALDIKQIELIRSTLDSTFNTLSPVLLLAPAIVIGLVVFKVPAIPGLIVGAVLGVLFA
VVFQGESMNTILDAAQNGYVSSTQIQEVDALLSKGGIMNMMSTVSLTICALSLGGILE
KTGMLEVVASSLLRLAKGVFGTVLCTMVTCTITNIIAGEQYLSIVIPGRMYNKEYKKR
GIHPKMLSRALEDSGTLTSPLVPWNTCGAYITATLGVSALTYGPYALLNIINPIVSLV
LIACKFKIARIEDEPETCLNFDV"
misc_feature 482742..484073
/locus_tag="CDBI1_02085"
/note="Na+/H+ antiporter NhaC; Region: antiport_nhaC;
TIGR00931"
/db_xref="CDD:188097"
gene 484574..485038
/locus_tag="CDBI1_02090"
/db_xref="GeneID:12216324"
CDS 484574..485038
/locus_tag="CDBI1_02090"
/note="'COG4978 Transcriptional regulator,
effector-binding domain/component'"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197584.1"
/db_xref="GI:384359732"
/db_xref="GeneID:12216324"
/translation="MTRISNITIAEQSEYCFLAIRKTIDFMVEFSEFSKQSFEKISKY
LEERGILSSGAPIVCFHNMDLAKLDVEVGFPVATYIDGKNEILQRIVPAQKIITAIDL
GPYELQDPTLEDLFSWANSNGYKLHGDIYYQYLNDINRPASEYLTKMMLPII"
misc_feature 484580..485032
/locus_tag="CDBI1_02090"
/note="GyrI-like small molecule binding domain; Region:
GyrI-like; cl01368"
/db_xref="CDD:207387"
gene 485336..485698
/locus_tag="CDBI1_02095"
/db_xref="GeneID:12216325"
CDS 485336..485698
/locus_tag="CDBI1_02095"
/note="COG0346 Lactoylglutathione lyase and related
lyases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197585.1"
/db_xref="GI:384359733"
/db_xref="GeneID:12216325"
/translation="MKIYDILTRFYIQDIEKAIPFYENLLKEKCSLRFSYKEVGLELA
QIGNVLLLSGSDDALKPFIETKSTFMVDSVDEWRSYLLDNGAVVVRDKKKVPTGYNMT
LRHPDGTIIEYVQHTKQD"
misc_feature 485357..485671
/locus_tag="CDBI1_02095"
/note="This domain superfamily is found in a variety of
structurally related metalloproteins, including the type I
extradiol dioxygenases, glyoxalase I and a group of
antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
cd06587"
/db_xref="CDD:211348"
misc_feature order(485366..485368,485453..485455,485486..485488,
485492..485494,485537..485539,485639..485641,
485663..485665,485669..485671)
/locus_tag="CDBI1_02095"
/note="active site"
/db_xref="CDD:211348"
gene 486293..487153
/locus_tag="CDBI1_02100"
/db_xref="GeneID:12216326"
CDS 486293..487153
/locus_tag="CDBI1_02100"
/note="COG2207 AraC-type DNA-binding domain-containing
proteins"
/codon_start=1
/transl_table=11
/product="AraC family transcriptional regulator"
/protein_id="YP_006197586.1"
/db_xref="GI:384359734"
/db_xref="GeneID:12216326"
/translation="MSYKVINVITAIDYIEEHLSEKLDLDIIANAVHYSKYHLHRTFT
TSVGLTMHDYIKRRKLTEAAKLLVFSKKPIIEIALIAGYESQQAFTSIFKAMYKKSPN
KYRKEQEFYPLQLRFVLKKDNLFSKNVLELEKEIKLASMSDIPLWMNLVRLVIDGFPN
LQEEEYIYQLEQYILEERALILKLNNVAIANMVFNRETRSIDFFGIHPQYRNSDIAQV
FLKKVIEDFLIDTDISITTFREGDKADTGHRDMIKKLGFAEAELLVEFGYPTQKFILP
CVEERDNRQN"
misc_feature 486335..486460
/locus_tag="CDBI1_02100"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
misc_feature 486356..486607
/locus_tag="CDBI1_02100"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
misc_feature 486500..486610
/locus_tag="CDBI1_02100"
/note="Bacterial regulatory helix-turn-helix proteins,
AraC family; Region: HTH_AraC; pfam00165"
/db_xref="CDD:143933"
gene 487411..489525
/locus_tag="CDBI1_02105"
/db_xref="GeneID:12216327"
CDS 487411..489525
/locus_tag="CDBI1_02105"
/note="COG3973 Superfamily I DNA and RNA helicases"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197587.1"
/db_xref="GI:384359735"
/db_xref="GeneID:12216327"
/translation="MSENKQVVNCDIIASNSKHNMCEHDVELLTFFPDEIAHLIEINN
KLDNAFKKAENLVDKLDKDYMDAKMYMVKNRGEIDPHEMFQNEQGLKQIDNYGAFMVK
VRDKINKIKDSPYFARIDFRLKDMDDESKYYIGRFAFDYEDELIILDWRSPIASMFYD
YEIGKAGYDAPIGWVDGEITRKRQFKIKNGKLEYALESSINIQDDILQKELSHTSDEK
MKSIISTIQKEQNQIIRNDKADTLIIQGVAGSGKTSIALHRIAFLLYRFKDKISANNV
IILSPNKVFGDYISNVLPELGEEPLCELSFENIAEVQLDRVINFESEKDPLEINDAKW
SERVRFKSTLDFVKLIDDYIKQMPNKIFIPKDYTFGSFTAKSDWIQSRFEAYNRYPVK
KRLEKVAEDIHYKFESDNIMEEDLPKVKSILKSLNGMLTIKNTLTLYKDFFKQMNISN
MFVMAEKKTLEWSDVYPFIYIHAAYEGIQEDKIIRHIVIDEMQDYTPIQYAVINLLFK
CKKTILGDFGQLVNPNHTHTLDDMKQLYNDGELVMLNKSYRSTFEIINFAKKIQDISS
LEPIERHGEEPALLKCNNEQDEINKIKIEIEEFKKSDNATLGIILKTDNDAKAVYDAL
REEYSVHLISSESSSFTKGVSITSIKMSKGLEFDEVIVPSVNNKTYYSDYDRSLLYIA
CTRAMHKLKLTYVGTLTQLISM"
misc_feature 487723..489498
/locus_tag="CDBI1_02105"
/note="Superfamily I DNA and RNA helicases [General
function prediction only]; Region: COG3973"
/db_xref="CDD:33754"
misc_feature 488107..>488286
/locus_tag="CDBI1_02105"
/note="Part of AAA domain; Region: AAA_19; pfam13245"
/db_xref="CDD:205425"
misc_feature 489235..489480
/locus_tag="CDBI1_02105"
/note="Family description; Region: UvrD_C_2; pfam13538"
/db_xref="CDD:205716"
gene complement(489787..492030)
/locus_tag="CDBI1_02110"
/db_xref="GeneID:12216328"
CDS complement(489787..492030)
/locus_tag="CDBI1_02110"
/note="COG0178 Excinuclease ATPase subunit"
/codon_start=1
/transl_table=11
/product="antibiotic resistance ABC transporter
ATP-binding protein"
/protein_id="YP_006197588.1"
/db_xref="GI:384359736"
/db_xref="GeneID:12216328"
/translation="MSNIIIKGLTQNNLKNISFKIPKNKIVVFTGVSGSGKSSIVFDT
IAAESQRQMNETYSSFIRNRLPKYRKPQVELIDNLTASVIVDQTPLGGNARSTVGTIS
DLYSSLRLLFSRIGEPYIGTTSYFSFNDPNGMCKNCSGIGRVKVINIESIINPENSWN
TGCINDSLFKPNSWYWKQYAESGLFDLDKPIKDYSFEEYNLLLYGSKNKDGKQENPKI
EGIFNKYNQTYLNRDISNMSKHTKEKSERLITDKECPVCHGKRLNKETLNCNILGYSI
ADMCNMELTDLYDLLLQIKDKRTETVIKTLTDGLKRMIDIGLPYLHLNRESSSLSGGE
AQRLKLVRYMGSSLTGMTYIFDEPSAGMHPRDVHRMNQLLKKLRDRGNTVLVVEHDKD
VISIADEVIDIGPSAGTQGGHVVFQGSYDKLLLANTLTSNAMNLSLPIKTDSRHPKGT
LPIRDACINNLKHIDVDLPVGIMTVVTGVAGSGKSTLISRVFAQKYEKDVIKIDQSPV
TATNRSMPATFLGFFDEIRKVFAKENNVEEGLFSFNSKGACPVCDGKGVLVTELVFMD
PIINTCEACKGTRYSEEVLSKLYKGKCIVDVLSMTVDESLEFFTEKKLCKILQTMKDV
GLPYMTLGQPLSTLSGGERQRIKLAKNLNKKGTIYILDEPTTGLHGSDIEKLMLIFEH
IVDKGNTVIIIEHNLDVLKQADWVIDIGPDGGKNGGQVVFEGTPLEMFERGCTITSDF
LRKSINI"
misc_feature complement(<491683..492021)
/locus_tag="CDBI1_02110"
/note="The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_I; cd03270"
/db_xref="CDD:73029"
misc_feature complement(490777..>491103)
/locus_tag="CDBI1_02110"
/note="The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process that
repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep...; Region:
ABC_UvrA_I; cd03270"
/db_xref="CDD:73029"
misc_feature complement(489853..490680)
/locus_tag="CDBI1_02110"
/note="P-loop containing Nucleoside Triphosphate
Hydrolases; Region: P-loop_NTPase; cl09099"
/db_xref="CDD:213113"
misc_feature complement(489928..490614)
/locus_tag="CDBI1_02110"
/note="AAA domain; Region: AAA_21; pfam13304"
/db_xref="CDD:205484"
misc_feature complement(490576..490599)
/locus_tag="CDBI1_02110"
/note="Walker A/P-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(order(489946..489948,490042..490047,
490516..490518,490573..490581,490585..490590))
/locus_tag="CDBI1_02110"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:72971"
misc_feature complement(490516..490527)
/locus_tag="CDBI1_02110"
/note="Q-loop/lid; other site"
/db_xref="CDD:72971"
misc_feature complement(490090..490119)
/locus_tag="CDBI1_02110"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:72971"
misc_feature complement(490042..490059)
/locus_tag="CDBI1_02110"
/note="Walker B; other site"
/db_xref="CDD:72971"
misc_feature complement(490024..490035)
/locus_tag="CDBI1_02110"
/note="D-loop; other site"
/db_xref="CDD:72971"
misc_feature complement(489940..489960)
/locus_tag="CDBI1_02110"
/note="H-loop/switch region; other site"
/db_xref="CDD:72971"
gene 492362..493078
/locus_tag="CDBI1_02115"
/db_xref="GeneID:12216329"
CDS 492362..493078
/locus_tag="CDBI1_02115"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_006197589.1"
/db_xref="GI:384359737"
/db_xref="GeneID:12216329"
/translation="MILIVILSIFIIASINIIILGKENIRDIVIPLTLFIVSDFLFLC
GNIICRGGVMLLFIGLFAIPLMLIAFIWICVHMIKLYYKKDLNKRKMIGCIFSIFISI
GTIFIPSPSESFRFKLYEKDYSVVAKAILKVYDEKKLSSESVFYIQSDKNELEKIFSK
EVIKKMKKLNRNLDVVKISGNRNLVYFFFGAELQSIDGIVIFKDLKHVKPKLDFINRS
IQAPRLEYITNNVYYFKGEL"
gene 493106..494044
/locus_tag="CDBI1_02120"
/db_xref="GeneID:12216330"
CDS 493106..494044
/locus_tag="CDBI1_02120"
/note="COG2602 Beta-lactamase class D"
/codon_start=1
/transl_table=11
/product="beta-lactamase"
/protein_id="YP_006197590.1"
/db_xref="GI:384359738"
/db_xref="GeneID:12216330"
/translation="MKRKNNFIWIVILLVVVAMGVYYVGRKHNNTKQKHDKNHINSEL
NKSKVENNDKNKKEKINMVDYSDCFEGISGGAIFYNTKNKEYNIYNKELIETRRSPCS
TFKIVSTLIGLEKGVINSKESVMGYDGTEYPNKNWNKNLSLEEAFKESCVWYYKKLID
KVDAKSVQNILDDLKYGNCDISEWEGDLKNGKGHLNGFWLESSLQISPKEQVQTMAKI
FEGDTNFKKEHINILRDIMKIDVNDKNINVYGKTGTGFDEKNKRVDAWFVGMLEREGD
TYYFAIKSDDSNKEITGPKVKEIAINIIKKYYSVRE"
misc_feature 493289..494026
/locus_tag="CDBI1_02120"
/note="Beta-lactamase class D [Defense mechanisms];
Region: COG2602"
/db_xref="CDD:32594"
gene 494388..495071
/locus_tag="CDBI1_02125"
/db_xref="GeneID:12216331"
CDS 494388..495071
/locus_tag="CDBI1_02125"
/note="'COG1136 ABC-type antimicrobial peptide transport
system, ATPase component'"
/codon_start=1
/transl_table=11
/product="ABC transporter ATP-binding protein"
/protein_id="YP_006197591.1"
/db_xref="GI:384359739"
/db_xref="GeneID:12216331"
/translation="MEILKCENLTKIYGSNQTRVTALNNVNLSVQKGDFVSIVGASGS
GKSTLLHLLGGVDRPTSGKIYVEDTEISSLKEEALAVFRRRKVGLIYQFYNLIPTLDV
RKNILLPMLLDKRKVDEDRFSEIVSILGLSDRLNHLPSQLSGGQQQRVSIARSLIYRP
AILLADEPTGNLDRKNSEEIVDLLNLSNKRFNQTILLITHDEKIALEANRIVTMEDGV
IVSEKVVKK"
misc_feature 494394..495059
/locus_tag="CDBI1_02125"
/note="ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms]; Region: SalX;
COG1136"
/db_xref="CDD:31331"
misc_feature 494397..495044
/locus_tag="CDBI1_02125"
/note="ATP-binding cassette domain of the transporters
involved in export of lipoprotein and macrolide, and cell
division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255"
/db_xref="CDD:213222"
misc_feature 494505..494528
/locus_tag="CDBI1_02125"
/note="Walker A/P-loop; other site"
/db_xref="CDD:213222"
misc_feature order(494514..494519,494523..494531,494661..494663,
494883..494888,494985..494987)
/locus_tag="CDBI1_02125"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:213222"
misc_feature 494652..494663
/locus_tag="CDBI1_02125"
/note="Q-loop/lid; other site"
/db_xref="CDD:213222"
misc_feature 494811..494840
/locus_tag="CDBI1_02125"
/note="ABC transporter signature motif; other site"
/db_xref="CDD:213222"
misc_feature 494871..494888
/locus_tag="CDBI1_02125"
/note="Walker B; other site"
/db_xref="CDD:213222"
misc_feature 494895..494906
/locus_tag="CDBI1_02125"
/note="D-loop; other site"
/db_xref="CDD:213222"
misc_feature 494973..494993
/locus_tag="CDBI1_02125"
/note="H-loop/switch region; other site"
/db_xref="CDD:213222"
gene 495068..497728
/locus_tag="CDBI1_02130"
/db_xref="GeneID:12216332"
CDS 495068..497728
/locus_tag="CDBI1_02130"
/note="'COG0577 ABC-type antimicrobial peptide transport
system, permease component'"
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="YP_006197592.1"
/db_xref="GI:384359740"
/db_xref="GeneID:12216332"
/translation="MNILQEYTLDFVRRNKRSSIAIMLAILLTTTMMSSLCGLLYTMW
TDFIRLSIEKEGNWHGELFDYTYGSDLPLIENFSSVDDVMVKGQWYVGKINDEKRDYI
IYRNATSEYWNSMPEKDTIIEGRRPNNANEIALSKQYFENNPSVKIGDKITLPIGDRI
LNGKPLEPIAQKSKGESFKKISETTLTIVGKVDVSTSSVIPAYTALGYLDRTSIKPND
SITVYLRFKNIRDTYKELPKLAKSLGWKTNEYGKYNLKYNSNYLLKMLVFSPEQKASM
SSISKFSTPIMYLTIAIFTVAVFVMVIYNAFSLSANARLTQLGILSSVGASPKQIKMS
VVFEGFLLTIIPLPIGLFLGWLLCNRLIVYINSVNYHTDVPEVVFTYGIPAFLPAVLL
TIVTVWISALIPARKVSKISPIEAIRQGDSVKIKKSHKYSLGKIFGIEGELASNALRA
RKKSYRTATISLTLSFLLLTCFLHIIANQEGAKAVYGSDNYKDQRDIAVYLENSEPVE
SAFIEKLDNTEGVKSSLYYQKMSASTWLTEKDASKELAKNGGFKSIVSSKKYSPIERD
GKFRIISNIIGLDDKSFTEYCRQISVDPKLFYDTKNPTSIVYNKEEDINRSTRRNKVY
IDYLNLSIGDNIKLNEKVYDEDKGDYTYNMKVGAITSTLPKTVDTSSKYTLMQIVPMS
MVQEISKNYDEVSRLRSNRLIGVFKVNNREDIPRVREKLESIYNKDYGSGDYSIEDVL
ESEKQKASGIKTMNLIVGFITGLLAMIGLSNVLATVSGNTRSRRQEFAMLRSVGLSPE
GIKKMLVLEGLFLGITPLLLSIPVQIGIVYAFLRINEIYFIEYLPFAPISTIIGFTIL
ILFIVIASYMTGYKQLKNENIVESIKNETI"
misc_feature 495104..496321
/locus_tag="CDBI1_02130"
/note="ABC-type transport system, involved in lipoprotein
release, permease component [Cell envelope biogenesis,
outer membrane]; Region: LolE; COG4591"
/db_xref="CDD:34229"
misc_feature 495104..>495568
/locus_tag="CDBI1_02130"
/note="MacB-like periplasmic core domain; Region:
MacB_PCD; pfam12704"
/db_xref="CDD:205030"
misc_feature 495938..496306
/locus_tag="CDBI1_02130"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:202350"
misc_feature <496949..497596
/locus_tag="CDBI1_02130"
/note="ABC-type transport system, involved in lipoprotein
release, permease component [Cell envelope biogenesis,
outer membrane]; Region: LolE; COG4591"
/db_xref="CDD:34229"
misc_feature 497342..>497599
/locus_tag="CDBI1_02130"
/note="FtsX-like permease family; Region: FtsX; pfam02687"
/db_xref="CDD:202350"
gene complement(497909..499090)
/locus_tag="CDBI1_02135"
/db_xref="GeneID:12216333"
CDS complement(497909..499090)
/locus_tag="CDBI1_02135"
/note="COG0642 Signal transduction histidine kinase"
/codon_start=1
/transl_table=11
/product="two-component sensor histidine kinase"
/protein_id="YP_006197593.1"
/db_xref="GI:384359741"
/db_xref="GeneID:12216333"
/translation="MKTPRNINSTVVFIIFCLIITFLLSVILTTITSFNEYNVLSKAL
GASYEYNPKSTESILKSLKNSSDKDFKTGNEILSKHGYSKSTFWSKNFFYFLVISFGI
ISTMATVVYIIKHRTNKQKLSRINNLTQYLEEVNLGKESVLLRCEDEFSHLEDEIYKT
VGELRCSKEFALKERQTLSDNLADIAHQLKTPITSMSLMAQLLSENCPDEEIDYINRL
TNQISRLERLVSSLLTLSKLDASTLIFESKLIDVHSLLTYAIEPIEGSLREKHQTFTI
EASPSVEFEIDINWTLEALLNILKNCSEHIEDGGYIVAYYSQNPLYVEIIIEDNGKGF
AQEELPYIFNRFYRGKNASKDSIGIGLALSKSIIERQNGTLHAENCHNGGARFIIKFY
T"
misc_feature complement(497918..498826)
/locus_tag="CDBI1_02135"
/note="Signal transduction histidine kinase [Signal
transduction mechanisms]; Region: BaeS; COG0642"
/db_xref="CDD:30987"
misc_feature complement(498380..498547)
/locus_tag="CDBI1_02135"
/note="Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via...; Region: HisKA; cd00082"
/db_xref="CDD:119399"
misc_feature complement(order(498395..498397,498407..498409,
498416..498418,498428..498430,498437..498439,
498449..498451,498494..498496,498503..498505,
498515..498517,498524..498526,498536..498538))
/locus_tag="CDBI1_02135"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:119399"
misc_feature complement(498530..498532)
/locus_tag="CDBI1_02135"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:119399"
misc_feature complement(497918..498211)
/locus_tag="CDBI1_02135"
/note="Histidine kinase-like ATPases; This family includes
several ATP-binding proteins for example: histidine
kinase, DNA gyrase B, topoisomerases, heat shock protein
HSP90, phytochrome-like ATPases and DNA mismatch repair
proteins; Region: HATPase_c; cd00075"
/db_xref="CDD:28956"
misc_feature complement(order(497930..497932,497936..497941,
497954..497956,497960..497962,498008..498019,
498089..498094,498098..498100,498104..498106,
498110..498112,498179..498181,498188..498190,
498200..498202))
/locus_tag="CDBI1_02135"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(498188..498190)
/locus_tag="CDBI1_02135"
/note="Mg2+ binding site [ion binding]; other site"
/db_xref="CDD:28956"
misc_feature complement(order(498011..498013,498017..498019,
498092..498094,498098..498100))
/locus_tag="CDBI1_02135"
/note="G-X-G motif; other site"
/db_xref="CDD:28956"
gene complement(499090..499752)
/locus_tag="CDBI1_02140"
/db_xref="GeneID:12216334"
CDS complement(499090..499752)
/locus_tag="CDBI1_02140"
/note="COG0745 Response regulators consisting of a
CheY-like receiver domain and a winged-helix DNA-binding
domain"
/codon_start=1
/transl_table=11
/product="two-component response regulator"
/protein_id="YP_006197594.1"
/db_xref="GI:384359742"
/db_xref="GeneID:12216334"
/translation="MAKILLLEDDDTITFGIKTSLEKKNHTVCCYNTIAEAKKNFDKT
IDLILLDLNLPDGIGYEFCQYVKSIEDTPVIFLTVRDDEKDIIRGLDMGADDYVVKPF
LLSVLQSRINAVLRRTHSNTNNTITCGNISLNKVEVKAYLDNVEVLLTAGEYKLLLSL
MENKNRAMTRTKLLEMLWDVDGNFVNDNTLTVTIKRLREKLKNPPCIKTLRGIGYRME
DS"
misc_feature complement(499096..499746)
/locus_tag="CDBI1_02140"
/note="Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]; Region:
OmpR; COG0745"
/db_xref="CDD:31088"
misc_feature complement(499408..499740)
/locus_tag="CDBI1_02140"
/note="Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the sensor
partner in a two-component systems; Region: REC; cd00156"
/db_xref="CDD:29071"
misc_feature complement(order(499450..499455,499462..499464,
499519..499521,499576..499578,499597..499599,
499726..499731))
/locus_tag="CDBI1_02140"
/note="active site"
/db_xref="CDD:29071"
misc_feature complement(499597..499599)
/locus_tag="CDBI1_02140"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29071"
misc_feature complement(order(499576..499578,499579..499581,
499585..499590))
/locus_tag="CDBI1_02140"
/note="intermolecular recognition site; other site"
/db_xref="CDD:29071"
misc_feature complement(499447..499455)
/locus_tag="CDBI1_02140"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:29071"
misc_feature complement(499102..499377)
/locus_tag="CDBI1_02140"
/note="Effector domain of response regulator. Bacteria and
certain eukaryotes like protozoa and higher plants use
two-component signal transduction systems to detect and
respond to changes in the environment. The system consists
of a sensor histidine kinase and...; Region: trans_reg_C;
cd00383"
/db_xref="CDD:29475"
misc_feature complement(order(499111..499113,499126..499128,
499150..499155,499177..499179,499186..499188,
499243..499248,499303..499305))
/locus_tag="CDBI1_02140"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:29475"
gene complement(499897..500430)
/locus_tag="CDBI1_02145"
/db_xref="GeneID:12216335"
CDS complement(499897..500430)
/locus_tag="CDBI1_02145"
/note="COG1309 Transcriptional regulator"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_006197595.1"
/db_xref="GI:384359743"
/db_xref="GeneID:12216335"
/translation="MNELAKEVEYTKRTIYKYFSCKEDLFFAVVLRGYKRLWDNVKIE
SAKGKTGFEKIKLSYFAFHKFYSVEPSLLCLMGMIGIVNSEKSDTDMLFKEKFFSFNK
FMFDEIQGMFEIGKNDRSIRHDIEIPTLMYSSIFTLTGFFNLLSVTGKSYLNNFNIDE
EKFIETTLALLIDSIKA"
misc_feature complement(500011..500430)
/locus_tag="CDBI1_02145"
/note="Transcriptional regulator [Transcription]; Region:
AcrR; COG1309"
/db_xref="CDD:31500"
misc_feature complement(500344..>500430)
/locus_tag="CDBI1_02145"
/note="Bacterial regulatory proteins, tetR family; Region:
TetR_N; pfam00440"
/db_xref="CDD:201228"
gene complement(500557..500763)
/locus_tag="CDBI1_02150"
/db_xref="GeneID:12216336"
CDS complement(500557..500763)
/locus_tag="CDBI1_02150"
/note="COG0675 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase-like protein b"
/protein_id="YP_006197596.1"
/db_xref="GI:384359744"
/db_xref="GeneID:12216336"
/translation="MVDKLYKVGKFFASSQICNKCGYKNEEVKNLNIREWICPSCNET
HDRDINASINILKEGLRLITIQNK"
misc_feature complement(500593..>500724)
/locus_tag="CDBI1_02150"
/note="Putative transposase DNA-binding domain; Region:
OrfB_Zn_ribbon; pfam07282"
/db_xref="CDD:115907"
gene complement(500744..501667)
/locus_tag="CDBI1_02155"
/db_xref="GeneID:12216337"
CDS complement(500744..501667)
/locus_tag="CDBI1_02155"
/note="COG0675 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase-like protein b"
/protein_id="YP_006197597.1"
/db_xref="GI:384359745"
/db_xref="GeneID:12216337"
/translation="MEKAYKFRMYPNKKQQELINKTFGCCRFVYNKYLAKRIEVYKND
KETFTYKQCSSDLTNLKKELKWLKEPDKFSLQNALKDLENAYEKFFKEKAGFPKFKSK
KINRFSYKTNFTNGNIMYCGQHIKLPKLGMVKIRDKQVPQGRILNATISKEPSGRYYV
SLCCTDVDIEVFENTNNQTGLDLGIKEFCISSCGEFIENPKYLKKSLNKLAKLQRELS
RKTIGSLNRNKARLKVARLQEHIANQRNDFLQKLSTKLIKENDIICIEDLQVKNMIKN
HKLSRLISDVSWSEFIRQLEYKANWYGRQIV"
misc_feature complement(500759..501667)
/locus_tag="CDBI1_02155"
/note="Transposase and inactivated derivatives [DNA
replication, recombination, and repair]; Region: COG0675"
/db_xref="CDD:31019"
misc_feature complement(501530..501667)
/locus_tag="CDBI1_02155"
/note="Helix-turn-helix domain; Region: HTH_OrfB_IS605;
pfam12323"
/db_xref="CDD:204881"
misc_feature complement(500849..501472)
/locus_tag="CDBI1_02155"
/note="Probable transposase; Region: OrfB_IS605;
pfam01385"
/db_xref="CDD:189964"
misc_feature complement(500747..500941)
/locus_tag="CDBI1_02155"
/note="transposase, IS605 OrfB family, central region;
Region: tspaseT_teng_C; TIGR01766"
/db_xref="CDD:200129"
gene complement(501678..501845)
/locus_tag="CDBI1_02160"
/db_xref="GeneID:12216338"
CDS complement(501678..501845)
/locus_tag="CDBI1_02160"
/note="COG1943 Transposase and inactivated derivatives"
/codon_start=1
/transl_table=11
/product="transposase-like protein A"
/protein_id="YP_006197598.1"
/db_xref="GI:384359746"
/db_xref="GeneID:12216338"
/translation="MEVTHGRGYAYSMSNTDIRIMGRHLWNPSYFVATVSENTEEQIR
KYINNQKKQVK"
misc_feature complement(501696..>501791)
/locus_tag="CDBI1_02160"
/note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
/db_xref="CDD:207217"
gene complement(502413..502511)
/locus_tag="CDBI1_02165"
/db_xref="GeneID:12216339"
CDS complement(502413..502511)
/locus_tag="CDBI1_02165"
/codon_start=1
/transl_table=11
/product="TetR family transcriptional regulator"
/protein_id="YP_006197599.1"
/db_xref="GI:384359747"
/db_xref="GeneID:12216339"
/translation="MSELSKRDKEKIQRENEIIDKAEKLFCLNGFD"
gene 502690..503295
/locus_tag="CDBI1_02170"
/db_xref="GeneID:12216340"
CDS 502690..503295
/locus_tag="CDBI1_02170"
/note="'COG0491 Zn-dependent hydrolases, including
glyoxylases'"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="YP_006197600.1"
/db_xref="GI:384359748"
/db_xref="GeneID:12216340"
/translation="MKIKENVLMLDSTRGSNCFIVFDKEIILIDTGLPFMGKNIIKEL
KTLGIKLTDIKHILLTHHDVDHISNIKLLKEKTGAKVWAHVEDIPFIIGEKDRPGFKK
FIGKAISRRLIKDVEPYGENMKIGNIKIIHTPGHTPGHVCMIFEDVLFAGDLVKNKNG
NIVPYPNPWNWDYKKMMKSIRELDNLKYEWICMSHGTPCIK"
misc_feature 502738..503274
/locus_tag="CDBI1_02170"
/note="Metallo-beta-lactamase superfamily; Region:
Lactamase_B; smart00849"
/db_xref="CDD:197917"
misc_feature 502744..503283
/locus_tag="CDBI1_02170"
/note="Zn-dependent hydrolases, including glyoxylases
[General function prediction only]; Region: GloB; COG0491"
/db_xref="CDD:30837"
gene 503799..504548
/locus_tag="CDBI1_02175"
/db_xref="GeneID:12216341"
CDS 503799..504548
/locus_tag="CDBI1_02175"
/note="COG1737 Transcriptional regulators"
/codon_start=1
/transl_table=11
/product="RpiR family transcriptional regulator"
/protein_id="YP_006197601.1"
/db_xref="GI:384359749"
/db_xref="GeneID:12216341"
/translation="MRLESLVNQSYNSLNENDKIIIKQILICQREYRNFSCEKIANEC
NVSRATLLRLCRKIGLDSFSDLKYLLKNNQLEFVNNDNNFHDVCENYRLLMNELQKIS
FQDICKIIYDAETIYIYGTGNEQKSLAQEIKRIFLSVGKCVIDLFDIGEIEFMRESFQ
KSDLFIIISLSGETKSGIEIAKFINNHIHTISLTRLDNNTIATLCEYNLYVETQKLDT
LQAISYEVVGAFYALLDLLHMNYIEYRRRKE"
misc_feature 503799..504542
/locus_tag="CDBI1_02175"
/note="Transcriptional regulators [Transcription]; Region:
RpiR; COG1737"
/db_xref="CDD:31923"
misc_feature 503799..504011
/locus_tag="CDBI1_02175"
/note="Helix-turn-helix domain, rpiR family; Region:
HTH_6; pfam01418"
/db_xref="CDD:201784"
misc_feature 504105..504509
/locus_tag="CDBI1_02175"
/note="RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E. coli,
rpiR negatively regulates the expression of rpiB gene.
Both rpiB and rpiA are ribose phosphate...; Region:
SIS_RpiR; cd05013"
/db_xref="CDD:88408"
misc_feature order(504171..504173,504303..504305)
/locus_tag="CDBI1_02175"
/note="putative active site [active]"
/db_xref="CDD:88408"
gene 504545..505309
/locus_tag="CDBI1_02180"
/db_xref="GeneID:12216342"
CDS 504545..505309
/locus_tag="CDBI1_02180"
/note="COG1737 Transcriptional regulators"
/codon_start=1
/transl_table=11
/product="RpiR family transcriptional regulator"
/protein_id="YP_006197602.1"
/db_xref="GI:384359750"
/db_xref="GeneID:12216342"
/translation="MKIEGLFNKYYNSFTANDKYICECILNHKEDCIKLSIDEFADKY
HISTSALSRFAQKLQLPGYSELRVIIRLNETEVEYKNQSKHQLMDCYNKVIDDIEKKD
CSIMFERMKKANRIIVFGEGYSQERVVKEMKRIFLPTGKIIYDVYGYDMIQALNHFIK
TDDMIFFISLNGDTSTIIDFAKEMRMKGTYMVSITKMISNPLARLCDENLYIQSISIS
VDKQLDYDVTTPYFILIELLYIKYKMYLESEHIPRK"
misc_feature 504545..505306
/locus_tag="CDBI1_02180"
/note="Transcriptional regulators [Transcription]; Region:
RpiR; COG1737"
/db_xref="CDD:31923"
misc_feature 504545..504748
/locus_tag="CDBI1_02180"
/note="Helix-turn-helix domain, rpiR family; Region:
HTH_6; pfam01418"
/db_xref="CDD:201784"
misc_feature 504866..505267
/locus_tag="CDBI1_02180"
/note="RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E. coli,
rpiR negatively regulates the expression of rpiB gene.
Both rpiB and rpiA are ribose phosphate...; Region:
SIS_RpiR; cd05013"
/db_xref="CDD:88408"
misc_feature order(504914..504916,505049..505051)
/locus_tag="CDBI1_02180"
/note="putative active site [active]"
/db_xref="CDD:88408"
gene 505414..506229
/locus_tag="CDBI1_02185"
/db_xref="GeneID:12216343"
CDS 505414..506229
/locus_tag="CDBI1_02185"
/note="COG0561 Predicted hydrolases of the HAD
superfamily"
/codon_start=1
/transl_table=11
/product="hydrolase"
/protein_id="YP_006197603.1"
/db_xref="GI:384359751"
/db_xref="GeneID:12216343"
/translation="MYKLLILDIDGTLRDEVYGIPESAKHAIRLCQKNHCSVVICTGR
SIGTIQDDVLSLGVDGYIAGGGNYIQYHGELLYNQSFNQRLIKEVVCLLKKREVAFSI
ESQEKVFMNQKAKEIFETMNQLKGTNSCINKQHIQEKITYENNIEEYKSQDVHKICLW
SNEKVFDEVKDILQDKMELAQRDISSQYYEIIQKDFHKGKAIKRLQERLGVTQKETIC
FGDGQNDIVMFQASDVTIAMKNSHQQLKDIATSICEDIFDNGIYKELKRRNII"
misc_feature 505423..>505674
/locus_tag="CDBI1_02185"
/note="Haloacid dehalogenase-like hydrolases. The haloacid
dehalogenase-like (HAD) superfamily includes L-2-haloacid
dehalogenase, epoxide hydrolase, phosphoserine
phosphatase, phosphomannomutase, phosphoglycolate
phosphatase, P-type ATPase, and many others; Region:
HAD_like; cd01427"
/db_xref="CDD:119389"
misc_feature 505426..506208
/locus_tag="CDBI1_02185"
/note="haloacid dehalogenase-like hydrolase; Region:
Hydrolase_3; pfam08282"
/db_xref="CDD:203899"
misc_feature order(505435..505443,505537..505542)
/locus_tag="CDBI1_02185"
/note="active site"
/db_xref="CDD:119389"
misc_feature 505435..505452
/locus_tag="CDBI1_02185"
/note="motif I; other site"
/db_xref="CDD:119389"
misc_feature 505537..505539
/locus_tag="CDBI1_02185"
/note="motif II; other site"
/db_xref="CDD:119389"
misc_feature <506002..506109
/locus_tag="CDBI1_02185"
/note="Haloacid Dehalogenase-like Hydrolases; Region:
HAD_like; cl11391"
/db_xref="CDD:212620"
gene 506243..507907
/locus_tag="CDBI1_02190"
/db_xref="GeneID:12216344"
CDS 506243..507907
/locus_tag="CDBI1_02190"
/note="COG0366 Glycosidases"
/codon_start=1
/transl_table=11
/product="oligo-1,6-glucosidase"
/protein_id="YP_006197604.1"
/db_xref="GI:384359752"
/db_xref="GeneID:12216344"
/translation="MEKKWWQKEIVYQIYPRSFQDSNNDGIGDLQGIISRLDYLKDLG
ITSLWLCPIFKSPMDDNGYDISDYLDIASEFGSMEDLKELIKESKDRGIKIILDLVLN
HTSDEHPWFQEALKNPESPYHDYYIFKKGNDLPNNWRSVFGGSVWEKVENRDEYYFHS
FGKKQPDLNWENPILRSELYQMINTWSQMGVAGFRVDAITFIKKNLSFQSLESDGVDG
LVKCTKTVRNQPGIEKMLYELKENTFKKYDCMTVAEAAGISYDQLGDFIGEDGFFSMV
FDFKHADLDVASGSEWFKRISWTIPDLRKCILDSQMYVQEHGWAANFIENHDQPRATT
KYLLQYERNDDAVKMLGAMYFFLRGTPFIYQGQELGMTNFKRDTINDFNDLSSIDQYY
RSIDEGYSEEEALEFVNLRSRDNARTPFPWADKENAGFSDATPWLKVIENYKDINAQS
QINNSESILEFYKKMIKLRQDSKYSDCLIYGSIEPIDIESDNVIAYRRQLDLVVIDCY
YNFSDKLVEIKTEEKYDIVFQNLDDINLLNKTVSLKPFQAVLLKVR"
misc_feature 506255..507898
/locus_tag="CDBI1_02190"
/note="alpha,alpha-phosphotrehalase; Region:
trehalose_treC; TIGR02403"
/db_xref="CDD:162843"
misc_feature 506261..507655
/locus_tag="CDBI1_02190"
/note="Alpha amylase catalytic domain found in Sucrose
isomerases, oligo-1,6-glucosidase (also called isomaltase;
sucrase-isomaltase; alpha-limit dextrinase), dextran
glucosidase (also called glucan 1,6-alpha-glucosidase),
and related proteins; Region: AmyAc_SI_OligoGlu_DGase;
cd11333"
/db_xref="CDD:200472"
misc_feature order(506303..506305,506309..506311,506315..506317,
506327..506329)
/locus_tag="CDBI1_02190"
/note="Ca binding site [ion binding]; other site"
/db_xref="CDD:200472"
misc_feature order(506420..506422,506429..506431,506540..506542,
506549..506551,506666..506668,506723..506725,
506735..506737,506831..506833,507002..507004,
507479..507481)
/locus_tag="CDBI1_02190"
/note="active site"
/db_xref="CDD:200472"
misc_feature order(506831..506833,507002..507004,507224..507226)
/locus_tag="CDBI1_02190"
/note="catalytic site [active]"
/db_xref="CDD:200472"
gene 507912..509786
/locus_tag="CDBI1_02195"
/db_xref="GeneID:12216345"
CDS 507912..509786
/locus_tag="CDBI1_02195"
/note="COG1264 Phosphotransferase system IIB components"
/codon_start=1
/transl_table=11
/product="PTS system transporter subunit IIABC"
/protein_id="YP_006197605.1"
/db_xref="GI:384359753"
/db_xref="GeneID:12216345"
/translation="MNKYNKIANELIEIIGENNIISITHCATRLRVMVKDREIINDKK
VEKVNEVKGVFFTSGQYQIILGTGIVNKVYAEVEKMGLKTLSKKEQDELVKNNETGFK
KVMRTLADIFVPIIPVIAATGLFLGLKGCLFNDNVLGLFGMSSANIPLYIQTLVSVLT
ETAFAFLPAIIVWSAFKVFGGTPVIGLVIGLMLVSPILPNAYSVADPSNEVEAIMAFG
FIPIVGCQGSVLTAIVTAFIGANLEKWFRKHMPNVLDLIFTPFFVMLITMLVILLGVG
PIMHTIELKMVDIISLLIGLPLGIGGFIIGFTYPLAVITGLHHTYVMIETSLLANTGF
NALITLCAMYGFANIGTCLAFMKKSKNNQVKQTAVGAMLSQLFGISEPVLFGIQLRYN
LKPLIIMCASSGLGAAILSILHIQSNSYGLAVLPSYLMYIYDGYNLITYLLVSIFVVA
FCFIVTCLFGVPKEAINEDEDEELVFNENNENFVSPAKGKIVALENVPDETFSKKMLG
DGFAIDIIDGKIVSPISGKLETVFSSGHAFGIKGTNGEVLIHVGIDTVALNGDGFDIA
VKQGDMVKQGDVLVNVDLKRIHELGKSTLTMVLFPDGKKVNILDINKDVKIGQRICVE
"
misc_feature 507981..509288
/locus_tag="CDBI1_02195"
/note="PTS system, sucrose-specific IIBC component;
Region: PTS-II-BC-sucr; TIGR01996"
/db_xref="CDD:131051"
misc_feature <507981..508154
/locus_tag="CDBI1_02195"
/note="PTS_IIB, PTS system, glucose/sucrose specific IIB
subunit. The bacterial phosphoenolpyruvate: sugar
phosphotransferase system (PTS) is a multi-protein system
involved in the regulation of a variety of metabolic and
transcriptional processes. This family...; Region:
PTS_IIB_glc; cl00164"
/db_xref="CDD:206873"
misc_feature 507984..508004
/locus_tag="CDBI1_02195"
/note="active site turn [active]"
/db_xref="CDD:29267"
misc_feature 507987..507989
/locus_tag="CDBI1_02195"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29267"
misc_feature 508194..509288
/locus_tag="CDBI1_02195"
/note="Phosphotransferase system IIC components,
glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
transport and metabolism]; Region: PtsG; COG1263"
/db_xref="CDD:31455"
misc_feature 509364..509783
/locus_tag="CDBI1_02195"
/note="Phosphotransferase system IIA components
[Carbohydrate transport and metabolism]; Region: NagE;
COG2190"
/db_xref="CDD:32373"
misc_feature order(509406..509417,509427..509432,509496..509501,
509505..509510,509526..509534,509547..509555,
509559..509561,509571..509573,509577..509582,
509616..509618)
/locus_tag="CDBI1_02195"
/note="HPr interaction site; other site"
/db_xref="CDD:29265"
misc_feature order(509406..509408,509412..509417,509421..509423,
509427..509432,509499..509501,509505..509507,
509517..509519,509553..509555,509559..509561,
509571..509573,509577..509582,509586..509588)
/locus_tag="CDBI1_02195"
/note="glycerol kinase (GK) interaction site [polypeptide
binding]; other site"
/db_xref="CDD:29265"
misc_feature order(509511..509513,509517..509519,509559..509561,
509565..509567)
/locus_tag="CDBI1_02195"
/note="active site"
/db_xref="CDD:29265"
misc_feature 509559..509561
/locus_tag="CDBI1_02195"
/note="phosphorylation site [posttranslational
modification]"
/db_xref="CDD:29265"
gene complement(510141..511940)
/locus_tag="CDBI1_02200"
/db_xref="GeneID:12216346"
CDS complement(510141..511940)
/locus_tag="CDBI1_02200"
/note="'COG4219 Antirepressor regulating drug resistance,
predicted signal transduction N-terminal membrane
component'"
/codon_start=1
/transl_table=11
/product="beta-lactamase-inducing penicillin-binding
protein"
/protein_id="YP_006197606.1"
/db_xref="GI:384359754"
/db_xref="GeneID:12216346"
/translation="MYAPFFIRFLLSTLTLSILIVIILLAKKVFKKHISAKYQYNIGF
ILLIMLIIPFVPLKYINLGNVFNYLYTFNQLGSSTNRTSIIKNSPNSIINNSNALNDF
SVSLNQVNFDSLNILLLISWIIGILIMIAITIHCNIKIKNMKKSIQILRDEEIVFIFE
KCKKDIGINKDFILCKSPIINTPITFGYFKPHIILPDKSISKLSLKDIKYILLHELQH
FKNKDILINYIMCFLQILYWFNPLVWYAFKEMRIDREIACDISVLKKLDKDSHIEYGQ
TLINFVDNISRPSNLTLTSDIGGSKKQIKKRLLKIMDFHNESNTLKFKSILIFTLIAL
IVFGNIPKLSIMADINEKYRPTNEQTVYEDLSQYFKGFDGSFVMYDLKSKQYHIYNKE
KSKTRISPNSTYKIYSALLGLENGIITRNNSHIPWDGKHHSNSSWNEDQDLFSAMENS
VNWYFQTLDKKTGLKNIQTYLKQIGYGNYDVSGGISNFWLESSLKISPIEQVELLESF
YTNKFKFEDKNIETVKDSLLISKKDGVSLFGKTGTANINGKDVNGWFIGYVEKNENTY
FFATNIQSKDYSNGSSASKITLSILNDKKIYNP"
misc_feature complement(511008..>511493)
/locus_tag="CDBI1_02200"
/note="BlaR1 peptidase M56; Region: Peptidase_M56;
cl15829"
/db_xref="CDD:210229"
misc_feature complement(510162..510848)
/locus_tag="CDBI1_02200"
/note="Beta-lactamase class D [Defense mechanisms];
Region: COG2602"
/db_xref="CDD:32594"
gene complement(511943..512329)
/locus_tag="CDBI1_02205"
/db_xref="GeneID:12216347"
CDS complement(511943..512329)
/locus_tag="CDBI1_02205"
/note="COG3682 Predicted transcriptional regulator"
/codon_start=1
/transl_table=11
/product="penicillinase repressor"
/protein_id="YP_006197607.1"
/db_xref="GI:384359755"
/db_xref="GeneID:12216347"
/translation="MKKLPHISEAEYQVMKIIWKYAPISTTEVIEKLVETSTWSPKTI
QTMLLRLVKKGALTYEKNSRVFVYTPLVKEEEYVATESSSFLNRFYNGTLNSMVLNFL
ENDKLSEDDIEELREILNKRTTKGDK"
misc_feature complement(511967..512311)
/locus_tag="CDBI1_02205"
/note="Penicillinase repressor; Region: Pencillinase_R;
pfam03965"
/db_xref="CDD:146546"
gene 512562..513239
/locus_tag="CDBI1_02210"
/db_xref="GeneID:12216348"
CDS 512562..513239
/locus_tag="CDBI1_02210"
/note="COG0655 Multimeric flavodoxin WrbA"
/codon_start=1
/transl_table=11
/product="iron-sulfur flavoprotein"
/protein_id="YP_006197608.1"
/db_xref="GI:384359756"
/db_xref="GeneID:12216348"
/translation="MIITVINGSPRKNGATSKVLTYLYKDIERLIPDVKINYFDLSEV
NPSYCIGCLNCYKMGKCINQNDKVEYIHDIITKSDGVIFGSPTYGSSVTGLFKVFTDR
AHMMLERLLYRKPCIAVTTYENARGSKAISFIKSMVLDSGGYVCGSLSIKTGFNQNPI
TEKVESKIQKVSKKFIYCIEEKKNPPVLSQIYNFIAINAVLKPMAFKDIEQYKGIIDR
WEEQGII"
misc_feature 512562..>512963
/locus_tag="CDBI1_02210"
/note="Multimeric flavodoxin WrbA [General function
prediction only]; Region: WrbA; COG0655"
/db_xref="CDD:31000"
gene 513215..513676
/locus_tag="CDBI1_02215"
/db_xref="GeneID:12216349"
CDS 513215..513676
/locus_tag="CDBI1_02215"
/note="COG1846 Transcriptional regulators"
/codon_start=1
/transl_table=11
/product="MarR family transcriptional regulator"
/protein_id="YP_006197609.1"
/db_xref="GI:384359757"
/db_xref="GeneID: 