GenomeNet

Database: RefSeq
Entry: NC_017179
LinkDB: NC_017179
Original site: NC_017179 
LOCUS       NC_017179            4118573 bp    DNA     circular CON 06-JUL-2013
DEFINITION  Clostridium difficile BI1, complete genome.
ACCESSION   NC_017179
VERSION     NC_017179.1  GI:383843669
DBLINK      Project: 158363
            BioProject: PRJNA158363
KEYWORDS    RefSeq; complete genome.
SOURCE      Clostridium difficile BI1
  ORGANISM  Clostridium difficile BI1
            Bacteria; Firmicutes; Clostridia; Clostridiales;
            Peptostreptococcaceae.
REFERENCE   1
  AUTHORS   He,M., Sebaihia,M., Lawley,T.D., Stabler,R.A., Dawson,L.F.,
            Martin,M.J., Holt,K.E., Seth-Smith,H.M., Quail,M.A., Rance,R.,
            Brooks,K., Churcher,C., Harris,D., Bentley,S.D., Burrows,C.,
            Clark,L., Corton,C., Murray,V., Rose,G., Thurston,S., van
            Tonder,A., Walker,D., Wren,B.W., Dougan,G. and Parkhill,J.
  TITLE     Evolutionary dynamics of Clostridium difficile over short and long
            time scales
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 107 (16), 7527-7532 (2010)
   PUBMED   20368420
REFERENCE   2  (bases 1 to 4118573)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2012) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 4118573)
  AUTHORS   He,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-FEB-2010) He M., Wellcome Trust Sanger Institute,
            Sulston Building, Wellcome Trust Genome Campus, Hinxton,
            Cambridgeshire CB10 1SA, UNITED KINGDOM
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to FN668941.
            Draft contiguous sequence
            454 data coverage: 15x
            capillary data coverage: 5.1x
            coverage with combined data (bases meeting finished standard) 97.5%
            coverage with combined data (bases below finished standard) 0.2%
            coverage with 454-only assembly 2.2%
            reference genomes: AM180355 and FN538970.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4118573
                     /organism="Clostridium difficile BI1"
                     /mol_type="genomic DNA"
                     /strain="BI1"
                     /isolation_source="Homo sapiens"
                     /db_xref="taxon:699034"
                     /country="USA"
                     /collection_date="1988"
     gene            1..1320
                     /gene="dnaA"
                     /locus_tag="CDBI1_00005"
                     /db_xref="GeneID:12213213"
     CDS             1..1320
                     /gene="dnaA"
                     /locus_tag="CDBI1_00005"
                     /note="COG0593 ATPase involved in DNA replication
                     initiation"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiation protein"
                     /protein_id="YP_006197172.1"
                     /db_xref="GI:384359320"
                     /db_xref="GeneID:12213213"
                     /translation="MDIVSLWDKTLQLIKGDLTSVSFNTFFKNIVPLKIHLNDLILLA
                     PSDFNKDILENRYLHLIEDAISQLSLKKYNIKFVLSEKEVADLNSDSTDLNYRVLYPN
                     LNPKYTFDTFVIGNSNRFAHAACVAVAESPAKAYNPLFLYGGVGLGKTHLMHAIGHHI
                     VSQKKDSKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQ
                     EEFFHTFNTLHEANKQIIISSDRPPKDIPTLEDRLRSRFEMGLITDIQAPDFETRIAI
                     LRKKAQLERIDVPNEVMSYIAKNIKSNIRELEGALTRVVAYSSLSNRVISFDLATEAL
                     KDIITTSKNEEINVLRIKEKVSSVFNLKMEDFNSKKRTRSIAYPRQIAMYLTRELTDL
                     SLPKIGEEFGGRDHTTVIHAHDKVSKDIEESEEIKTKIDKIISDLKG"
     misc_feature    4..1317
                     /gene="dnaA"
                     /locus_tag="CDBI1_00005"
                     /note="chromosomal replication initiation protein;
                     Reviewed; Region: dnaA; PRK00149"
                     /db_xref="CDD:234667"
     misc_feature    13..201
                     /gene="dnaA"
                     /locus_tag="CDBI1_00005"
                     /note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
                     /db_xref="CDD:221153"
     misc_feature    352..783
                     /gene="dnaA"
                     /locus_tag="CDBI1_00005"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    427..450
                     /gene="dnaA"
                     /locus_tag="CDBI1_00005"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(430..453,616..618,718..720)
                     /gene="dnaA"
                     /locus_tag="CDBI1_00005"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    604..621
                     /gene="dnaA"
                     /locus_tag="CDBI1_00005"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    754..756
                     /gene="dnaA"
                     /locus_tag="CDBI1_00005"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    1048..1311
                     /gene="dnaA"
                     /locus_tag="CDBI1_00005"
                     /note="C-terminal domain of bacterial DnaA proteins. The
                     DNA-binding C-terminal domain of DnaA contains a
                     helix-turn-helix motif that specifically interacts with
                     the DnaA box, a 9-mer motif that occurs repetitively in
                     the replication origin oriC. Multiple...; Region:
                     Bac_DnaA_C; cd06571"
                     /db_xref="CDD:119330"
     misc_feature    order(1111..1113,1135..1140,1159..1161,1177..1185,
                     1210..1224,1231..1233,1240..1245)
                     /gene="dnaA"
                     /locus_tag="CDBI1_00005"
                     /note="DnaA box-binding interface [nucleotide binding];
                     other site"
                     /db_xref="CDD:119330"
     gene            1562..2668
                     /locus_tag="CDBI1_00010"
                     /db_xref="GeneID:12215844"
     CDS             1562..2668
                     /locus_tag="CDBI1_00010"
                     /EC_number="2.7.7.7"
                     /note="COG0592 DNA polymerase sliding clamp subunit (PCNA
                     homolog)"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="YP_006197173.1"
                     /db_xref="GI:384359321"
                     /db_xref="GeneID:12215844"
                     /translation="MKIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKL
                     TGYDAEIGIETYVQAEIIEKGDVVVDARLFGDIIRKLPDSFVEIETDSENNIYINCVN
                     SRFKIKGYAAKEFPKLPELNEEDLYSIPQEILKNMIKQTVFAISQDQTKPVLMGELLE
                     IVDRNLNLVAIDGYRLAVKSCSVDSLTENIKVIIPGKTLIDVNSLLSGEDNVKVGFNE
                     KNAIFIINDTKIITRLLEGDFIDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEK
                     NNLIKLSIRDKVMAITSNTEKGNVYEEVEIDLDGDYLDIAFNSRYFIEGLKNIDNEEI
                     FIEFTTNVNPCIIKPTDDVNYIYLLLPVRISSNI"
     misc_feature    1562..2653
                     /locus_tag="CDBI1_00010"
                     /note="DNA polymerase III subunit beta; Validated; Region:
                     PRK05643"
                     /db_xref="CDD:235541"
     misc_feature    1562..2650
                     /locus_tag="CDBI1_00010"
                     /note="Beta clamp domain.  The beta subunit (processivity
                     factor) of DNA polymerase III holoenzyme, refered to as
                     the beta clamp, forms a ring shaped dimer that encircles
                     dsDNA (sliding clamp) in bacteria.  The beta-clamp is
                     structurally similar to the trimeric...; Region:
                     beta_clamp; cd00140"
                     /db_xref="CDD:238082"
     misc_feature    order(1631..1633,1775..1777,1796..1798,2150..2152)
                     /locus_tag="CDBI1_00010"
                     /note="putative DNA binding surface [nucleotide binding];
                     other site"
                     /db_xref="CDD:238082"
     misc_feature    order(1778..1780,1787..1789,1865..1867,1871..1873,
                     2369..2371,2462..2467)
                     /locus_tag="CDBI1_00010"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238082"
     misc_feature    order(2072..2074,2078..2089,2513..2515,2639..2650)
                     /locus_tag="CDBI1_00010"
                     /note="beta-clamp/clamp loader binding surface; other
                     site"
                     /db_xref="CDD:238082"
     misc_feature    order(2072..2074,2078..2083,2294..2296,2402..2404,
                     2441..2446,2522..2524,2639..2650)
                     /locus_tag="CDBI1_00010"
                     /note="beta-clamp/translesion DNA polymerase binding
                     surface; other site"
                     /db_xref="CDD:238082"
     gene            2805..3011
                     /locus_tag="CDBI1_00015"
                     /db_xref="GeneID:12215846"
     CDS             2805..3011
                     /locus_tag="CDBI1_00015"
                     /note="COG2501 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding mediating protein"
                     /protein_id="YP_006197174.1"
                     /db_xref="GI:384359322"
                     /db_xref="GeneID:12215846"
                     /translation="MTEITIESEYIKLDQFLKLAEIASTGGHAKFLIQEGLVTVNDEI
                     ELRRGKKIKSGDIVKIEGTKIKVL"
     misc_feature    2841..3008
                     /locus_tag="CDBI1_00015"
                     /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
                     domain surface is populated by conserved, charged residues
                     that define a likely RNA-binding site;  Found in stress
                     proteins, ribosomal proteins and tRNA synthetases; This
                     may imply a hitherto unrecognized...; Region: S4; cd00165"
                     /db_xref="CDD:238095"
     misc_feature    order(2874..2879,2883..2888,2892..2897,2904..2909,
                     2913..2915,2934..2957,2961..2963)
                     /locus_tag="CDBI1_00015"
                     /note="RNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238095"
     gene            3029..4144
                     /locus_tag="CDBI1_00020"
                     /db_xref="GeneID:12214994"
     CDS             3029..4144
                     /locus_tag="CDBI1_00020"
                     /note="COG1195 Recombinational DNA repair ATPase (RecF
                     pathway)"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication and repair protein"
                     /protein_id="YP_006197175.1"
                     /db_xref="GI:384359323"
                     /db_xref="GeneID:12214994"
                     /translation="MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIY
                     MLSFGKSFRTNKDKEMVRFNSENLYIGGSFSKYNKYSLIELIIGKDKKGIRINKVPLQ
                     KIQELLGNLNVVIFSPEDLRLVKEGPKERRAFIDKEISQIIPKYYKYLTNYNKTLSQR
                     SRVLKNIHVDEALLDVYDDTLAKYGSYIYILRRDFIKKIANISENMHMNLTNGVERLS
                     IRYKNQINITDEDTIDTVYNKFLAKLSSNRPNDIESKTTRYGIHKDDLNIFINDLDAR
                     LFGSQGQQRTASISLKLSEIELIKNEVEEYPVLILDDVFSELDEARQKLLVNNLSNVQ
                     MFITSAEVSHKKIFDEKNVTIFNIENGDVISIENGGN"
     misc_feature    3029..4123
                     /locus_tag="CDBI1_00020"
                     /note="recombination protein F; Reviewed; Region: recF;
                     PRK00064"
                     /db_xref="CDD:234608"
     misc_feature    3035..>3586
                     /locus_tag="CDBI1_00020"
                     /note="ATP-binding cassette domain of RecF; Region:
                     ABC_RecF; cd03242"
                     /db_xref="CDD:213209"
     misc_feature    3116..3139
                     /locus_tag="CDBI1_00020"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213209"
     misc_feature    order(3125..3130,3134..3142,3329..3331)
                     /locus_tag="CDBI1_00020"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213209"
     misc_feature    3320..3331
                     /locus_tag="CDBI1_00020"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213209"
     misc_feature    <3806..4111
                     /locus_tag="CDBI1_00020"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:247755"
     misc_feature    3863..3892
                     /locus_tag="CDBI1_00020"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    3950..3967
                     /locus_tag="CDBI1_00020"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    3974..3985
                     /locus_tag="CDBI1_00020"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    4037..4057
                     /locus_tag="CDBI1_00020"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            4145..6046
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /db_xref="GeneID:12214996"
     CDS             4145..6046
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="'COG0187 Type IIA topoisomerase (DNA gyrase/topo
                     II, topoisomerase IV), B subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit B"
                     /protein_id="YP_006197176.1"
                     /db_xref="GI:384359324"
                     /db_xref="GeneID:12214996"
                     /translation="MKQEYGASQIQVLEGLEAVRKRPGMYIGSTSPRGLHHLVYEVVD
                     NSIDEALQGYCSDIYVSINEDGSVLVKDNGRGIPVEIHPKTGKSTLETVLTNLHAGGK
                     FGGGGYKVSGGLHGVGVSVVNALSKWMVAEVYLNGKIYKQTYEKGLPTSKLEVVGESQ
                     DKGTMIQFMPDETIFDEIEFKYETLEYRLRELSFLNKGIKIVFEDKREGQEKRKEFHY
                     TGGLVEYIKYLNKSRTGIHDDIVYIDKKVDDCFVELAMQYTDGYTENIYSFANNINTH
                     EGGSHLSGFKAALTKTVNDYAKRNKFLKENDVNLLGEDIREGLTAVVSVKLPEPQFEG
                     QTKTKLGNSFMRGIVDSVTVDELGSFLEENPSTARIIVDKALRAQRAREAAKKARELT
                     RRKSVLESTSLPGKLADCAEKDPSKSEIFLVEGDSAGGSAKQGRDRNSQAILPLRGKI
                     LNVEKSRLDRILSSDEIKNMITAYGCGIGEDFDIDKARYHKIIIMTDADVDGAHIRTL
                     LLTFFFRYMRPLIDEGYVYAAQPPLYKVTKQKKEHYVYSDKELNILLDEIGRNGVELQ
                     RYKGLGEMNAEQLWETTMNPETRTLLQVTVEDAAIADEVFSMLMGDKVAPRKEFIEEN
                     ARFVRNLDI"
     misc_feature    4145..6043
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="DNA gyrase subunit B; Validated; Region: gyrB;
                     PRK05644"
                     /db_xref="CDD:235542"
     misc_feature    4247..>4396
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="Histidine kinase-like ATPases; This family includes
                     several ATP-binding proteins for example: histidine
                     kinase, DNA gyrase B, topoisomerases, heat shock protein
                     HSP90, phytochrome-like ATPases and DNA mismatch repair
                     proteins; Region: HATPase_c; cd00075"
                     /db_xref="CDD:238030"
     misc_feature    4277..4279
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="Mg2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    order(4364..4366,4370..4372)
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="G-X-G motif; other site"
                     /db_xref="CDD:238030"
     misc_feature    4802..5263
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
                     a ribosomal S5 domain 2-like fold, of the type found in
                     proteins of the type IIA family of DNA topoisomerases
                     similar to the B subunits of E. coli DNA gyrase and E.
                     coli Topoisomerase IV which are; Region:
                     TopoII_Trans_DNA_gyrase; cd00822"
                     /db_xref="CDD:238419"
     misc_feature    4955..4957
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="anchoring element; other site"
                     /db_xref="CDD:238419"
     misc_feature    order(5129..5131,5138..5143,5147..5149)
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238419"
     misc_feature    order(5147..5149,5153..5155)
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238419"
     misc_feature    5396..5737
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
                     nucleotidyl transferase/hydrolase domain of the type found
                     in proteins of the type IIA family of DNA topoisomerases
                     similar to the Escherichia coli GyrB subunit. TopoIIA
                     enzymes cut both strands of the...; Region:
                     TOPRIM_TopoIIA_GyrB; cd03366"
                     /db_xref="CDD:173786"
     misc_feature    order(5414..5419,5426..5428,5633..5635,5639..5641,
                     5645..5647)
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="active site"
                     /db_xref="CDD:173786"
     misc_feature    order(5414..5416,5633..5635)
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="putative metal-binding site [ion binding]; other
                     site"
                     /db_xref="CDD:173786"
     misc_feature    5819..6010
                     /gene="gyrB"
                     /locus_tag="CDBI1_00025"
                     /note="DNA gyrase B subunit, carboxyl terminus; Region:
                     DNA_gyraseB_C; pfam00986"
                     /db_xref="CDD:201537"
     gene            6066..8492
                     /locus_tag="CDBI1_00030"
                     /db_xref="GeneID:12215153"
     CDS             6066..8492
                     /locus_tag="CDBI1_00030"
                     /note="'COG0188 Type IIA topoisomerase (DNA gyrase/topo
                     II, topoisomerase IV), A subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="YP_006197177.1"
                     /db_xref="GI:384359325"
                     /db_xref="GeneID:12215153"
                     /translation="MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVH
                     RRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLV
                     DGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPA
                     RYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPT
                     AAIIMGKESIAEAYRTGRGKVKVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIA
                     ELVKEKRIEGISDLRDESNRNGMRIVIELKRDANANIVLNNLYKHSQMEDTFSIIMLA
                     LVDGQPRVLNLKQILYHYIKHQEDVVTRRTKFELNKAEARAHILEGLKIALDNIDAVI
                     SLIRASKTGQEAKIGLIEKFKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKIN
                     RLKEILADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLT
                     HFGYIKRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKL
                     NAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPIDGNDENEYLLLATKKGIVKKTKR
                     EEFKNINKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYMGRTA
                     MGVKGITLSKEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNI
                     SEKTGTIVGADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVV
                     SIAKINIEEE"
     misc_feature    6072..8486
                     /locus_tag="CDBI1_00030"
                     /note="DNA gyrase subunit A; Validated; Region: PRK05560"
                     /db_xref="CDD:235502"
     misc_feature    6153..7475
                     /locus_tag="CDBI1_00030"
                     /note="DNA Topoisomerase, subtype IIA; domain A';
                     bacterial DNA topoisomerase IV (C subunit, ParC),
                     bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
                     toposiomerases II. DNA topoisomerases are essential
                     enzymes that regulate the conformational changes...;
                     Region: TOP4c; cd00187"
                     /db_xref="CDD:238111"
     misc_feature    order(6153..6233,6246..6395,6399..6455,6459..6530,
                     6537..6539)
                     /locus_tag="CDBI1_00030"
                     /note="CAP-like domain; other site"
                     /db_xref="CDD:238111"
     misc_feature    6426..6428
                     /locus_tag="CDBI1_00030"
                     /note="active site"
                     /db_xref="CDD:238111"
     misc_feature    order(7221..7229,7236..7247,7278..7283,7323..7373)
                     /locus_tag="CDBI1_00030"
                     /note="primary dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238111"
     misc_feature    7578..7712
                     /locus_tag="CDBI1_00030"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:217832"
     misc_feature    7725..7871
                     /locus_tag="CDBI1_00030"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:217832"
     misc_feature    7887..8024
                     /locus_tag="CDBI1_00030"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:217832"
     misc_feature    8031..8174
                     /locus_tag="CDBI1_00030"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:217832"
     misc_feature    8184..8327
                     /locus_tag="CDBI1_00030"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:217832"
     misc_feature    8334..8477
                     /locus_tag="CDBI1_00030"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:217832"
     gene            8561..8857
                     /locus_tag="CDBI1_00035"
                     /db_xref="GeneID:12215155"
     CDS             8561..8857
                     /locus_tag="CDBI1_00035"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197178.1"
                     /db_xref="GI:384359326"
                     /db_xref="GeneID:12215155"
                     /translation="MCNKRSCKKGGFLLLGAILGFIFGMFFAPKKGSELRKETKEKFN
                     DVKENPKEVLHETFNDVKERIINLVDDDNNEEDIKISEEDIVISKSFDDEGDVN"
     misc_feature    <8645..8773
                     /locus_tag="CDBI1_00035"
                     /note="YtxH-like protein; Region: YtxH; pfam12732"
                     /db_xref="CDD:221740"
     gene            8857..9117
                     /locus_tag="CDBI1_00040"
                     /db_xref="GeneID:12213909"
     CDS             8857..9117
                     /locus_tag="CDBI1_00040"
                     /note="COG0477 Permeases of the major facilitator
                     superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197179.1"
                     /db_xref="GI:384359327"
                     /db_xref="GeneID:12213909"
                     /translation="MNAWGWQIGAVLVGSSALIVAIYLAKTLNSINKVVEKAYKIVDY
                     NERHIQDIVENASSISKGIDDIVYVINKILSIGNIFKIIKRK"
     misc_feature    <8857..>8976
                     /locus_tag="CDBI1_00040"
                     /note="alpha-ketoglutarate transporter; Provisional;
                     Region: PRK10406"
                     /db_xref="CDD:182433"
     gene            9129..9446
                     /locus_tag="CDBI1_00045"
                     /db_xref="GeneID:12213911"
     CDS             9129..9446
                     /locus_tag="CDBI1_00045"
                     /note="COG1366 Anti-anti-sigma regulatory factor
                     (antagonist of anti-sigma factor)"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-B factor antagonist"
                     /protein_id="YP_006197180.1"
                     /db_xref="GI:384359328"
                     /db_xref="GeneID:12213911"
                     /translation="MSMNIDSNLDSQNKFWNVCLDGELDVSTADKLKEHLHALIEKNM
                     LDVKINLKDLDYIDSTGLGAMIGVLKKLKINEKEIYIVNPKSNVKKIFTITGLDKIFK
                     VEG"
     misc_feature    9180..9437
                     /locus_tag="CDBI1_00045"
                     /note="Sulphate Transporter and Anti-Sigma factor
                     antagonist) domain of anti-anti-sigma factors, key
                     regulators of anti-sigma factors by phosphorylation;
                     Region: STAS_anti-anti-sigma_factors; cd07043"
                     /db_xref="CDD:132914"
     misc_feature    order(9195..9197,9201..9209,9225..9227,9294..9296,
                     9300..9308,9312..9320,9327..9332,9396..9398,9408..9413,
                     9417..9419)
                     /locus_tag="CDBI1_00045"
                     /note="anti sigma factor interaction site; other site"
                     /db_xref="CDD:132914"
     misc_feature    9303..9305
                     /locus_tag="CDBI1_00045"
                     /note="regulatory phosphorylation site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:132914"
     gene            9450..9857
                     /locus_tag="CDBI1_00050"
                     /db_xref="GeneID:12213913"
     CDS             9450..9857
                     /locus_tag="CDBI1_00050"
                     /note="COG2172 Anti-sigma regulatory factor (Ser/Thr
                     protein kinase)"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-B factor (serine-protein kinase)"
                     /protein_id="YP_006197181.1"
                     /db_xref="GI:384359329"
                     /db_xref="GeneID:12213913"
                     /translation="MACETIKMEITTNPDYVSIIRLTASGIANKMGFPIDDIEDIKVA
                     VSEACTNAIKHSKDDVFNIVFNILDNAINIEIQDNGKGYDVSSISTPDLENPKESGLG
                     LFIIKTLMDDVDIESEHNQGTKIKMTKYLGVDI"
     misc_feature    9477..9836
                     /locus_tag="CDBI1_00050"
                     /note="Histidine kinase-like ATPase domain; Region:
                     HATPase_c_2; pfam13581"
                     /db_xref="CDD:222239"
     misc_feature    9579..9833
                     /locus_tag="CDBI1_00050"
                     /note="Histidine kinase-like ATPases; This family includes
                     several ATP-binding proteins for example: histidine
                     kinase, DNA gyrase B, topoisomerases, heat shock protein
                     HSP90, phytochrome-like ATPases and DNA mismatch repair
                     proteins; Region: HATPase_c; cd00075"
                     /db_xref="CDD:238030"
     misc_feature    order(9588..9590,9600..9602,9609..9611,9675..9677,
                     9681..9683,9687..9689,9693..9698,9747..9758,9792..9794,
                     9798..9800,9813..9818,9822..9824)
                     /locus_tag="CDBI1_00050"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    9600..9602
                     /locus_tag="CDBI1_00050"
                     /note="Mg2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    order(9687..9689,9693..9695,9747..9749,9753..9755)
                     /locus_tag="CDBI1_00050"
                     /note="G-X-G motif; other site"
                     /db_xref="CDD:238030"
     gene            9857..10630
                     /locus_tag="CDBI1_00055"
                     /db_xref="GeneID:12215442"
     CDS             9857..10630
                     /locus_tag="CDBI1_00055"
                     /note="COG1191 DNA-directed RNA polymerase specialized
                     sigma subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-B factor"
                     /protein_id="YP_006197182.1"
                     /db_xref="GI:384359330"
                     /db_xref="GeneID:12215442"
                     /translation="MKNVANATHYLNMDTKELFNLYNKNKNVDIRNILIERHLYLARL
                     LAKKYINKGVDFEDIYQVASLALIYAIDRYDVEKGFEFSSFATPTIVGEIKKYFRDKV
                     WTLRVPRRIQELSKKISDAKIKLEQENKKHPKVKDIADYIGVSEEDVLEAMEASYGYQ
                     PMSLDSSSNDDSEDKDITLIDKIGKEEGNFGSIEYEDFINKFIETLNELEVKIFKDRF
                     FFDKTQSSIAKELGISQMTVSRLEKKVVEKLKKEYEKNL"
     misc_feature    9938..10576
                     /locus_tag="CDBI1_00055"
                     /note="RNA polymerase sigma-70 factor, sigma-B/F/G
                     subfamily; Region: SigBFG; TIGR02980"
                     /db_xref="CDD:234078"
     misc_feature    9956..10168
                     /locus_tag="CDBI1_00055"
                     /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
                     /db_xref="CDD:218138"
     misc_feature    10193..>10336
                     /locus_tag="CDBI1_00055"
                     /note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
                     /db_xref="CDD:146934"
     misc_feature    10451..10576
                     /locus_tag="CDBI1_00055"
                     /note="Sigma70, region (SR) 4 refers to the most
                     C-terminal of four conserved domains found in Escherichia
                     coli (Ec) sigma70, the main housekeeping sigma, and
                     related sigma-factors (SFs). A SF is a dissociable subunit
                     of RNA polymerase, it directs bacterial or...; Region:
                     Sigma70_r4; cd06171"
                     /db_xref="CDD:100119"
     misc_feature    order(10475..10477,10505..10507,10523..10528,10556..10558,
                     10562..10567,10571..10576)
                     /locus_tag="CDBI1_00055"
                     /note="DNA binding residues [nucleotide binding]"
                     /db_xref="CDD:100119"
     gene            10811..12323
                     /locus_tag="CDBI1_r18386"
                     /db_xref="GeneID:12215443"
     rRNA            10811..12323
                     /locus_tag="CDBI1_r18386"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:12215443"
     misc_feature    12625..15446
                     /note="potential RNA of insufficient length (23S ribosomal
                     RNA)"
     gene            15697..15813
                     /locus_tag="CDBI1_r18364"
                     /db_xref="GeneID:12215444"
     rRNA            15697..15813
                     /locus_tag="CDBI1_r18364"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:12215444"
     gene            15819..15907
                     /locus_tag="CDBI1_t18212"
                     /db_xref="GeneID:12215445"
     tRNA            15819..15907
                     /locus_tag="CDBI1_t18212"
                     /product="tRNA-Leu"
                     /db_xref="GeneID:12215445"
     gene            15919..15995
                     /locus_tag="CDBI1_t18214"
                     /db_xref="GeneID:12215446"
     tRNA            15919..15995
                     /locus_tag="CDBI1_t18214"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12215446"
     gene            16104..17616
                     /locus_tag="CDBI1_r18388"
                     /db_xref="GeneID:12215447"
     rRNA            16104..17616
                     /locus_tag="CDBI1_r18388"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:12215447"
     gene            17663..17738
                     /locus_tag="CDBI1_t18216"
                     /db_xref="GeneID:12215448"
     tRNA            17663..17738
                     /locus_tag="CDBI1_t18216"
                     /product="tRNA-Ala"
                     /db_xref="GeneID:12215448"
     misc_feature    17993..20837
                     /note="potential RNA of insufficient length (23S ribosomal
                     RNA)"
     gene            21001..21117
                     /locus_tag="CDBI1_r18366"
                     /db_xref="GeneID:12215449"
     rRNA            21001..21117
                     /locus_tag="CDBI1_r18366"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:12215449"
     gene            21244..21753
                     /locus_tag="CDBI1_00060"
                     /db_xref="GeneID:12215450"
     CDS             21244..21753
                     /locus_tag="CDBI1_00060"
                     /note="COG1827 Predicted small molecule binding protein
                     (contains 3H domain)"
                     /codon_start=1
                     /transl_table=11
                     /product="small-molecule-binding protein"
                     /protein_id="YP_006197183.1"
                     /db_xref="GI:384359331"
                     /db_xref="GeneID:12215450"
                     /translation="MNSDERRSKLIDILKESKCPVKGGMLAEILNVSRQVIVQDIALI
                     RARGFEIIATPQGYIIYNQPYFTKQIKCKNHRNSKEIYDELKIIVDLGGIVKDVIVNH
                     PTYGQITAELNIHSKMDIDNFMKKVETNEFKQLSVLTECSHIHTIETLKEETIEVITK
                     ELEDRGILS"
     misc_feature    21244..21747
                     /locus_tag="CDBI1_00060"
                     /note="Predicted small molecule binding protein (contains
                     3H domain) [General function prediction only]; Region:
                     COG1827"
                     /db_xref="CDD:224740"
     misc_feature    21259..21420
                     /locus_tag="CDBI1_00060"
                     /note="HTH domain; Region: HTH_11; pfam08279"
                     /db_xref="CDD:116863"
     misc_feature    21451..21747
                     /locus_tag="CDBI1_00060"
                     /note="3H domain; Region: 3H; pfam02829"
                     /db_xref="CDD:202419"
     gene            21765..22646
                     /locus_tag="CDBI1_00065"
                     /db_xref="GeneID:12215451"
     CDS             21765..22646
                     /locus_tag="CDBI1_00065"
                     /note="COG0668 Small-conductance mechanosensitive channel"
                     /codon_start=1
                     /transl_table=11
                     /product="putative mechanosensitive ion channel protein"
                     /protein_id="YP_006197184.1"
                     /db_xref="GI:384359332"
                     /db_xref="GeneID:12215451"
                     /translation="MNFLSLAKAASTNSNITKRTLENMLNNFSDNIPNIIYAIIVFVI
                     GIYISKIVRKMVSRFLIKYGMSKGVNNFIVYGIYISMLSIISLISLGVIGIQTTSVVA
                     VLGAAGFSIGLAFKEILSNLGSGMIILFFKPFNIGDYIQGSGVEGTVSDIQIFSTVLK
                     TPDNKTIIIPNFQLTSNNIINYTHQNKRRIDFSYNISYDSDIDVVKSILNEIFINEKR
                     ILDDPKPIIGLNSIGNNTMQIVARPWVKTDDYWDVYFDVMEKVKNKFDENNIKVPFVP
                     SSLLFNNMSNSNTMDKR"
     misc_feature    22050..22580
                     /locus_tag="CDBI1_00065"
                     /note="Mechanosensitive ion channel; Region: MS_channel;
                     pfam00924"
                     /db_xref="CDD:201506"
     gene            23104..24375
                     /locus_tag="CDBI1_00070"
                     /db_xref="GeneID:12215452"
     CDS             23104..24375
                     /locus_tag="CDBI1_00070"
                     /EC_number="6.1.1.11"
                     /note="COG0172 Seryl-tRNA synthetase"
                     /codon_start=1
                     /transl_table=11
                     /product="seryl-tRNA synthetase"
                     /protein_id="YP_006197185.1"
                     /db_xref="GI:384359333"
                     /db_xref="GeneID:12215452"
                     /translation="MLDIKRIRENLDDIKKAMERRGEREFDLDAVVELDNKRREILQE
                     VEVMKNELNVNSKKIPQLIKEGKDVTEEKTRLKELSDKIKGIDEKVKEVEAKMEYTLM
                     RIPNVPHPEVPQGETDEDNVQIRTWGEPTKFDFEYKAHWDIGTGLGILDFERAGKITG
                     SRFTLYRGLGARLERSLMNFFLNTHTAKHGYTEVLPPFMANRNSFIGTGQLPKFEEDM
                     FKIEGLEYFLIPTAEVPVTNIHANEILDVAELPIKYCAYTPCFRSEAGSAGRDTRGLV
                     RQHQFNKVELVKFVKPEDSYNELESLTHDAETMLQMLGLPYRVVKICTGDLGFTAAFK
                     YDLEVWMPSYNRYVEISSCSNFEDFQARRAGIRFKRDKKSKAEYVHTLNGSGLAIGRC
                     LAAILENYQQADGSVVVPEELRPYMGVDVIK"
     misc_feature    23104..24372
                     /locus_tag="CDBI1_00070"
                     /note="seryl-tRNA synthetase; Provisional; Region:
                     PRK05431"
                     /db_xref="CDD:235461"
     misc_feature    23104..23427
                     /locus_tag="CDBI1_00070"
                     /note="Seryl-tRNA synthetase N-terminal domain; Region:
                     Seryl_tRNA_N; pfam02403"
                     /db_xref="CDD:217020"
     misc_feature    23461..24354
                     /locus_tag="CDBI1_00070"
                     /note="Seryl-tRNA synthetase (SerRS) class II core
                     catalytic domain. SerRS is responsible for the attachment
                     of serine to the 3' OH group of ribose of the appropriate
                     tRNA. This domain It is primarily responsible for
                     ATP-dependent formation of the enzyme...; Region:
                     SerRS_core; cd00770"
                     /db_xref="CDD:238393"
     misc_feature    order(23563..23580,23587..23607,23617..23619,23623..23625,
                     23629..23631,23638..23640,23677..23688,23692..23700,
                     23704..23706,23758..23763,23767..23769,23779..23781,
                     23806..23808,23818..23820,23830..23832,23878..23880,
                     23941..23943,24349..24354)
                     /locus_tag="CDBI1_00070"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238393"
     misc_feature    order(23584..23586,23794..23796,23800..23802,23887..23889,
                     23893..23895,23911..23913,23920..23922,23929..23931,
                     23935..23937,23944..23946,23950..23952,23956..23958,
                     24148..24159,24250..24252,24256..24258,24274..24276)
                     /locus_tag="CDBI1_00070"
                     /note="active site"
                     /db_xref="CDD:238393"
     misc_feature    23677..23700
                     /locus_tag="CDBI1_00070"
                     /note="motif 1; other site"
                     /db_xref="CDD:238393"
     misc_feature    23884..23895
                     /locus_tag="CDBI1_00070"
                     /note="motif 2; other site"
                     /db_xref="CDD:238393"
     misc_feature    order(24259..24267,24274..24276)
                     /locus_tag="CDBI1_00070"
                     /note="motif 3; other site"
                     /db_xref="CDD:238393"
     gene            24695..25150
                     /locus_tag="CDBI1_00075"
                     /db_xref="GeneID:12215453"
     CDS             24695..25150
                     /locus_tag="CDBI1_00075"
                     /note="COG0590 Cytosine/adenosine deaminases"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine/adenosine deaminase"
                     /protein_id="YP_006197186.1"
                     /db_xref="GI:384359334"
                     /db_xref="GeneID:12215453"
                     /translation="MESSFYMKEALKEAYKAYNKKETPIGAIIVKDNQIIARAHNLTE
                     TLKDSTAHAEILAIKQASEKLGGWRLTDCDLYVTMEPCIMCSGAIVNSRIKKLIIGTR
                     HVKNSYIEKQHEFKLDYFNNNNVKVAFDVLQEECSIILQEFFKALRKRD"
     misc_feature    24713..25003
                     /locus_tag="CDBI1_00075"
                     /note="Nucleoside deaminases include adenosine, guanine
                     and cytosine deaminases. These enzymes are Zn dependent
                     and catalyze the deamination of nucleosides. The zinc ion
                     in the active site plays a central role in the proposed
                     catalytic mechanism, activating a...; Region:
                     nucleoside_deaminase; cd01285"
                     /db_xref="CDD:238612"
     misc_feature    order(24767..24769,24815..24817,24848..24856,24938..24940,
                     24947..24949)
                     /locus_tag="CDBI1_00075"
                     /note="nucleoside/Zn binding site; other site"
                     /db_xref="CDD:238612"
     misc_feature    order(24842..24844,24857..24859,24869..24871,24941..24946,
                     24953..24958,24965..24970)
                     /locus_tag="CDBI1_00075"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238612"
     misc_feature    order(24848..24856,24935..24940,24947..24949)
                     /locus_tag="CDBI1_00075"
                     /note="catalytic motif [active]"
                     /db_xref="CDD:238612"
     gene            25151..25242
                     /locus_tag="CDBI1_t18218"
                     /db_xref="GeneID:12215454"
     tRNA            25151..25242
                     /locus_tag="CDBI1_t18218"
                     /product="tRNA-Ser"
                     /db_xref="GeneID:12215454"
     misc_feature    25165..25350
                     /note="potential protein location (hypothetical protein
                     CDBI1_00080 [Clostridium difficile BI1]) that overlaps RNA
                     (tRNA-S)"
     gene            25621..27258
                     /locus_tag="CDBI1_00085"
                     /db_xref="GeneID:12215455"
     CDS             25621..27258
                     /locus_tag="CDBI1_00085"
                     /EC_number="2.7.7.7"
                     /note="'COG2812 DNA polymerase III, gamma/tau subunits'"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunits gamma and tau"
                     /protein_id="YP_006197187.1"
                     /db_xref="GI:384359335"
                     /db_xref="GeneID:12215455"
                     /translation="MHKALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCG
                     TRGTGKTSTAKIFSRAVNCLNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDD
                     IRELRESVKYSPANAKYKVYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHK
                     IPATILSRCQRYDFKRVTVKDMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALS
                     ILDQCMSFGESKIDYKDVVELMGSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKD
                     IRNLINDLIDHFRNLMVCKVSSELDEIISLPEETIEQLKIQSKNIDINDLIRILNILS
                     ITQDDIKSSSNPRVLVEITIMKIAQPMFDESKEALIKRVENLEKMIELGNFKSEKIGN
                     NKEKEYEVDREIDVKQENVVYEDVKNEDVILIESSWKNILKQIKKDKKMPIYALLSEV
                     KSFNVYSNMLYVIFDDKFDFAKTRLSSQDTINYLEKTIRDVLNRSFNVKIVLTSEVKD
                     INLEVKEKKDIGEEILKNIVSEEILEIKYSIDENESK"
     misc_feature    25621..27228
                     /locus_tag="CDBI1_00085"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated; Region: PRK05563"
                     /db_xref="CDD:235505"
     misc_feature    25672..26133
                     /locus_tag="CDBI1_00085"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    25750..25773
                     /locus_tag="CDBI1_00085"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(25753..25776,25993..25995,26086..26088)
                     /locus_tag="CDBI1_00085"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    25981..25998
                     /locus_tag="CDBI1_00085"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    26122..26124
                     /locus_tag="CDBI1_00085"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    26311..26739
                     /locus_tag="CDBI1_00085"
                     /note="DNA polymerase III subunits gamma and tau domain
                     III; Region: DNA_pol3_gamma3; pfam12169"
                     /db_xref="CDD:152604"
     gene            27317..27667
                     /locus_tag="CDBI1_00090"
                     /db_xref="GeneID:12215456"
     CDS             27317..27667
                     /locus_tag="CDBI1_00090"
                     /note="COG0718 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197188.1"
                     /db_xref="GI:384359336"
                     /db_xref="GeneID:12215456"
                     /translation="MAKKGFGGGMMPGGGNMNNLLKQAQKMQENMQKAQQELESKEVE
                     ASVGGGAVTVKVNGKKEVIDITIKPEVVDPDDIEMLQDLVLSAVNQALRNIDDIQASQ
                     MSKVTGGMNIPGLF"
     misc_feature    27374..27664
                     /locus_tag="CDBI1_00090"
                     /note="hypothetical protein; Validated; Region: PRK00153"
                     /db_xref="CDD:234669"
     gene            27680..28279
                     /locus_tag="CDBI1_00095"
                     /db_xref="GeneID:12215457"
     CDS             27680..28279
                     /locus_tag="CDBI1_00095"
                     /note="COG0353 Recombinational DNA repair protein (RecF
                     pathway)"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="YP_006197189.1"
                     /db_xref="GI:384359337"
                     /db_xref="GeneID:12215457"
                     /translation="MQVYTGPITRLIEEFSKLPGVGRKTAQRLAFHIINMNTNDVEAL
                     SKAIIDAKREIRYCSICCNITDTDPCSMCSNKSRDSSVICVVEDPRDVAAMERTREFK
                     GQYHVLNGVISPMDGIGPDMLKIKELIQRLGNQEVKEIIMATNPTIEGEATAMYIARL
                     VKPMGIKVTRIAHGLPVGGDLEYADEVTISKALEGRREI"
     misc_feature    27689..28276
                     /locus_tag="CDBI1_00095"
                     /note="recombination protein RecR; Reviewed; Region: recR;
                     PRK00076"
                     /db_xref="CDD:234616"
     misc_feature    27797..27916
                     /locus_tag="CDBI1_00095"
                     /note="RecR protein; Region: RecR; pfam02132"
                     /db_xref="CDD:202123"
     misc_feature    27920..28255
                     /locus_tag="CDBI1_00095"
                     /note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
                     nucleotidyl transferase/hydrolase domain of the type found
                     in Escherichia coli RecR.  RecR participates in the RecFOR
                     pathway of homologous recombinational repair in
                     prokaryotes. This pathway provides a...; Region:
                     TOPRIM_recR; cd01025"
                     /db_xref="CDD:173775"
     misc_feature    order(27938..27943,27950..27952,28112..28114,28118..28120,
                     28124..28126)
                     /locus_tag="CDBI1_00095"
                     /note="putative active site [active]"
                     /db_xref="CDD:173775"
     misc_feature    order(27938..27940,28112..28114)
                     /locus_tag="CDBI1_00095"
                     /note="putative metal-binding site [ion binding]; other
                     site"
                     /db_xref="CDD:173775"
     misc_feature    order(27956..27964,27968..27973,28094..28096,28100..28102,
                     28106..28108,28115..28117,28151..28153,28181..28216,
                     28220..28222,28235..28237,28241..28243,28247..28255)
                     /locus_tag="CDBI1_00095"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:173775"
     gene            28420..28641
                     /locus_tag="CDBI1_00100"
                     /db_xref="GeneID:12215458"
     CDS             28420..28641
                     /locus_tag="CDBI1_00100"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197190.1"
                     /db_xref="GI:384359338"
                     /db_xref="GeneID:12215458"
                     /translation="MKPIMNLEEHNAMKEKRVKKMKSKDKPKYDDFEDISFSNKKKTK
                     KNVRNKNAEFRNNYKNYQYDYEEDFYEPI"
     gene            complement(28712..29917)
                     /locus_tag="CDBI1_00105"
                     /db_xref="GeneID:12215459"
     CDS             complement(28712..29917)
                     /locus_tag="CDBI1_00105"
                     /note="COG0707 UDP-N-acetylglucosamine:LPS
                     N-acetylglucosamine transferase"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="YP_006197191.1"
                     /db_xref="GI:384359339"
                     /db_xref="GeneID:12215459"
                     /translation="MSKKVLIMSASTGGGHNRAALAIKEELTSKTLDGEPIECEIIDS
                     LKLVNNTMDKIISRGYEKSAIYTPKAYGSVYRLSETNLLSKNEFKDNLLITFMAKKFK
                     KLIRSEKPDLIIGTHPFPMIALSTLKKNFNLHNNESNAYTEHFYKHYTNTINVPPLIS
                     VLTDYTTHSTWIQNEIDYYIVGHEYVKELLVFDGVGPSKIRTFGIPVEKSFLSHRDKD
                     IVLSELNLSPDKLTVLLMGGSFGAGNIKETLDELLDTDRDFQILVITGKNESLKEKIE
                     KKLMSRYHDKNVCVLGYTDKMNDILASIDVLVSKPGGLTTTEALLKDVPMIVPYYIPG
                     QEEENLDFLSNCGAALRTTKKYNLSILLKVLIDDPSRLEMLKRNVKSIRKSNSAQNIA
                     NLILNIISG"
     misc_feature    complement(28763..29911)
                     /locus_tag="CDBI1_00105"
                     /note="diacylglycerol glucosyltransferase; Provisional;
                     Region: PRK13609"
                     /db_xref="CDD:237445"
     misc_feature    complement(29297..29872)
                     /locus_tag="CDBI1_00105"
                     /note="Monogalactosyldiacylglycerol (MGDG) synthase;
                     Region: MGDG_synth; pfam06925"
                     /db_xref="CDD:219230"
     misc_feature    complement(<28928..29224)
                     /locus_tag="CDBI1_00105"
                     /note="Glycosyltransferase family 28 C-terminal domain;
                     Region: Glyco_tran_28_C; cl17369"
                     /db_xref="CDD:247923"
     gene            30424..31936
                     /locus_tag="CDBI1_r18390"
                     /db_xref="GeneID:12215460"
     rRNA            30424..31936
                     /locus_tag="CDBI1_r18390"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:12215460"
     misc_feature    32238..35059
                     /note="potential RNA of insufficient length (23S ribosomal
                     RNA)"
     gene            35290..35406
                     /locus_tag="CDBI1_r18368"
                     /db_xref="GeneID:12215461"
     rRNA            35290..35406
                     /locus_tag="CDBI1_r18368"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:12215461"
     gene            35413..35487
                     /locus_tag="CDBI1_t18220"
                     /db_xref="GeneID:12215462"
     tRNA            35413..35487
                     /locus_tag="CDBI1_t18220"
                     /product="tRNA-Asn"
                     /db_xref="GeneID:12215462"
     gene            35494..35579
                     /locus_tag="CDBI1_t18222"
                     /db_xref="GeneID:12215463"
     tRNA            35494..35579
                     /locus_tag="CDBI1_t18222"
                     /product="tRNA-Leu"
                     /db_xref="GeneID:12215463"
     gene            35595..35670
                     /locus_tag="CDBI1_t18224"
                     /db_xref="GeneID:12215464"
     tRNA            35595..35670
                     /locus_tag="CDBI1_t18224"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12215464"
     gene            35678..35752
                     /locus_tag="CDBI1_t18226"
                     /db_xref="GeneID:12215465"
     tRNA            35678..35752
                     /locus_tag="CDBI1_t18226"
                     /product="tRNA-Glu"
                     /db_xref="GeneID:12215465"
     gene            35762..35835
                     /locus_tag="CDBI1_t18228"
                     /db_xref="GeneID:12215466"
     tRNA            35762..35835
                     /locus_tag="CDBI1_t18228"
                     /product="tRNA-Gly"
                     /db_xref="GeneID:12215466"
     gene            35841..35916
                     /locus_tag="CDBI1_t18230"
                     /db_xref="GeneID:12215467"
     tRNA            35841..35916
                     /locus_tag="CDBI1_t18230"
                     /product="tRNA-Val"
                     /db_xref="GeneID:12215467"
     gene            35922..35998
                     /locus_tag="CDBI1_t18232"
                     /db_xref="GeneID:12215468"
     tRNA            35922..35998
                     /locus_tag="CDBI1_t18232"
                     /product="tRNA-Asp"
                     /db_xref="GeneID:12215468"
     gene            36008..36082
                     /locus_tag="CDBI1_t18234"
                     /db_xref="GeneID:12215469"
     tRNA            36008..36082
                     /locus_tag="CDBI1_t18234"
                     /product="tRNA-Thr"
                     /db_xref="GeneID:12215469"
     misc_feature    complement(36090..36239)
                     /note="potential protein location (hypothetical protein
                     CDBI1_00110 [Clostridium difficile BI1]) that overlaps RNA
                     (tRNA-L)"
     gene            36097..36181
                     /locus_tag="CDBI1_t18236"
                     /db_xref="GeneID:12215470"
     tRNA            36097..36181
                     /locus_tag="CDBI1_t18236"
                     /product="tRNA-Tyr"
                     /db_xref="GeneID:12215470"
     gene            36190..36273
                     /locus_tag="CDBI1_t18238"
                     /db_xref="GeneID:12215471"
     tRNA            36190..36273
                     /locus_tag="CDBI1_t18238"
                     /product="tRNA-Leu"
                     /db_xref="GeneID:12215471"
     gene            36303..36379
                     /locus_tag="CDBI1_t18240"
                     /db_xref="GeneID:12215472"
     tRNA            36303..36379
                     /locus_tag="CDBI1_t18240"
                     /product="tRNA-Arg"
                     /db_xref="GeneID:12215472"
     gene            36387..36462
                     /locus_tag="CDBI1_t18242"
                     /db_xref="GeneID:12215473"
     tRNA            36387..36462
                     /locus_tag="CDBI1_t18242"
                     /product="tRNA-Gln"
                     /db_xref="GeneID:12215473"
     gene            36551..36639
                     /locus_tag="CDBI1_t18244"
                     /db_xref="GeneID:12215474"
     tRNA            36551..36639
                     /locus_tag="CDBI1_t18244"
                     /product="tRNA-Ser"
                     /db_xref="GeneID:12215474"
     gene            36643..36718
                     /locus_tag="CDBI1_t18246"
                     /db_xref="GeneID:12215475"
     tRNA            36643..36718
                     /locus_tag="CDBI1_t18246"
                     /product="tRNA-Phe"
                     /db_xref="GeneID:12215475"
     gene            36725..36801
                     /locus_tag="CDBI1_t18248"
                     /db_xref="GeneID:12215476"
     tRNA            36725..36801
                     /locus_tag="CDBI1_t18248"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12215476"
     gene            36813..36889
                     /locus_tag="CDBI1_t18250"
                     /db_xref="GeneID:12215477"
     tRNA            36813..36889
                     /locus_tag="CDBI1_t18250"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12215477"
     gene            36913..36989
                     /locus_tag="CDBI1_t18252"
                     /db_xref="GeneID:12215478"
     tRNA            36913..36989
                     /locus_tag="CDBI1_t18252"
                     /product="tRNA-Pro"
                     /db_xref="GeneID:12215478"
     gene            36997..37073
                     /locus_tag="CDBI1_t18254"
                     /db_xref="GeneID:12215479"
     tRNA            36997..37073
                     /locus_tag="CDBI1_t18254"
                     /product="tRNA-His"
                     /db_xref="GeneID:12215479"
     gene            37082..37157
                     /locus_tag="CDBI1_t18256"
                     /db_xref="GeneID:12215480"
     tRNA            37082..37157
                     /locus_tag="CDBI1_t18256"
                     /product="tRNA-Lys"
                     /db_xref="GeneID:12215480"
     gene            37165..37238
                     /locus_tag="CDBI1_t18258"
                     /db_xref="GeneID:12215481"
     tRNA            37165..37238
                     /locus_tag="CDBI1_t18258"
                     /product="tRNA-Cys"
                     /db_xref="GeneID:12215481"
     gene            37245..37319
                     /locus_tag="CDBI1_t18260"
                     /db_xref="GeneID:12215482"
     tRNA            37245..37319
                     /locus_tag="CDBI1_t18260"
                     /product="tRNA-Asn"
                     /db_xref="GeneID:12215482"
     gene            37325..37410
                     /locus_tag="CDBI1_t18262"
                     /db_xref="GeneID:12215483"
     tRNA            37325..37410
                     /locus_tag="CDBI1_t18262"
                     /product="tRNA-Leu"
                     /db_xref="GeneID:12215483"
     gene            37426..37501
                     /locus_tag="CDBI1_t18264"
                     /db_xref="GeneID:12215484"
     tRNA            37426..37501
                     /locus_tag="CDBI1_t18264"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12215484"
     gene            37509..37583
                     /locus_tag="CDBI1_t18266"
                     /db_xref="GeneID:12215485"
     tRNA            37509..37583
                     /locus_tag="CDBI1_t18266"
                     /product="tRNA-Glu"
                     /db_xref="GeneID:12215485"
     gene            37593..37666
                     /locus_tag="CDBI1_t18268"
                     /db_xref="GeneID:12215486"
     tRNA            37593..37666
                     /locus_tag="CDBI1_t18268"
                     /product="tRNA-Gly"
                     /db_xref="GeneID:12215486"
     gene            37672..37747
                     /locus_tag="CDBI1_t18270"
                     /db_xref="GeneID:12215487"
     tRNA            37672..37747
                     /locus_tag="CDBI1_t18270"
                     /product="tRNA-Val"
                     /db_xref="GeneID:12215487"
     gene            37753..37829
                     /locus_tag="CDBI1_t18272"
                     /db_xref="GeneID:12215488"
     tRNA            37753..37829
                     /locus_tag="CDBI1_t18272"
                     /product="tRNA-Asp"
                     /db_xref="GeneID:12215488"
     gene            37839..37913
                     /locus_tag="CDBI1_t18274"
                     /db_xref="GeneID:12215489"
     tRNA            37839..37913
                     /locus_tag="CDBI1_t18274"
                     /product="tRNA-Thr"
                     /db_xref="GeneID:12215489"
     gene            37928..38012
                     /locus_tag="CDBI1_t18276"
                     /db_xref="GeneID:12215490"
     tRNA            37928..38012
                     /locus_tag="CDBI1_t18276"
                     /product="tRNA-Tyr"
                     /db_xref="GeneID:12215490"
     gene            38022..38105
                     /locus_tag="CDBI1_t18278"
                     /db_xref="GeneID:12215491"
     tRNA            38022..38105
                     /locus_tag="CDBI1_t18278"
                     /product="tRNA-Leu"
                     /db_xref="GeneID:12215491"
     gene            38129..38203
                     /locus_tag="CDBI1_t18280"
                     /db_xref="GeneID:12215492"
     tRNA            38129..38203
                     /locus_tag="CDBI1_t18280"
                     /product="tRNA-Gly"
                     /db_xref="GeneID:12215492"
     gene            38228..38304
                     /locus_tag="CDBI1_t18282"
                     /db_xref="GeneID:12215493"
     tRNA            38228..38304
                     /locus_tag="CDBI1_t18282"
                     /product="tRNA-Arg"
                     /db_xref="GeneID:12215493"
     gene            38314..38389
                     /locus_tag="CDBI1_t18284"
                     /db_xref="GeneID:12215494"
     tRNA            38314..38389
                     /locus_tag="CDBI1_t18284"
                     /product="tRNA-Gln"
                     /db_xref="GeneID:12215494"
     gene            38398..38473
                     /locus_tag="CDBI1_t18286"
                     /db_xref="GeneID:12215495"
     tRNA            38398..38473
                     /locus_tag="CDBI1_t18286"
                     /product="tRNA-Lys"
                     /db_xref="GeneID:12215495"
     gene            38476..38564
                     /locus_tag="CDBI1_t18288"
                     /db_xref="GeneID:12215496"
     tRNA            38476..38564
                     /locus_tag="CDBI1_t18288"
                     /product="tRNA-Ser"
                     /db_xref="GeneID:12215496"
     gene            38568..38643
                     /locus_tag="CDBI1_t18290"
                     /db_xref="GeneID:12215497"
     tRNA            38568..38643
                     /locus_tag="CDBI1_t18290"
                     /product="tRNA-Phe"
                     /db_xref="GeneID:12215497"
     gene            38650..38726
                     /locus_tag="CDBI1_t18292"
                     /db_xref="GeneID:12215498"
     tRNA            38650..38726
                     /locus_tag="CDBI1_t18292"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12215498"
     gene            38738..38814
                     /locus_tag="CDBI1_t18294"
                     /db_xref="GeneID:12215499"
     tRNA            38738..38814
                     /locus_tag="CDBI1_t18294"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12215499"
     gene            38832..38908
                     /locus_tag="CDBI1_t18296"
                     /db_xref="GeneID:12215500"
     tRNA            38832..38908
                     /locus_tag="CDBI1_t18296"
                     /product="tRNA-His"
                     /db_xref="GeneID:12215500"
     gene            38917..38992
                     /locus_tag="CDBI1_t18298"
                     /db_xref="GeneID:12215501"
     tRNA            38917..38992
                     /locus_tag="CDBI1_t18298"
                     /product="tRNA-Lys"
                     /db_xref="GeneID:12215501"
     gene            39000..39073
                     /locus_tag="CDBI1_t18300"
                     /db_xref="GeneID:12215502"
     tRNA            39000..39073
                     /locus_tag="CDBI1_t18300"
                     /product="tRNA-Cys"
                     /db_xref="GeneID:12215502"
     gene            39081..39157
                     /locus_tag="CDBI1_t18302"
                     /db_xref="GeneID:12215503"
     tRNA            39081..39157
                     /locus_tag="CDBI1_t18302"
                     /product="tRNA-Arg"
                     /db_xref="GeneID:12215503"
     gene            39170..39245
                     /locus_tag="CDBI1_t18304"
                     /db_xref="GeneID:12215504"
     tRNA            39170..39245
                     /locus_tag="CDBI1_t18304"
                     /product="tRNA-Val"
                     /db_xref="GeneID:12215504"
     gene            39321..39734
                     /locus_tag="CDBI1_00115"
                     /db_xref="GeneID:12215505"
     CDS             39321..39734
                     /locus_tag="CDBI1_00115"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197192.1"
                     /db_xref="GI:384359340"
                     /db_xref="GeneID:12215505"
                     /translation="MYIVIGNEIVDSEELKIIIDENSKFKVEKDLSKSTKREDVIAYQ
                     LSIDLNYLDSLINEQCNLSSLSDEEKFDEYMTLSDELALDLEELMPKYTIINARAYKL
                     DEVDGIVKIILAVAYADLGHLKLSDVVKRLSRQVD"
     gene            40043..43474
                     /locus_tag="CDBI1_00120"
                     /db_xref="GeneID:12215506"
     CDS             40043..43474
                     /locus_tag="CDBI1_00120"
                     /EC_number="6.4.1.1"
                     /note="COG1038 Pyruvate carboxylase"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate carboxylase"
                     /protein_id="YP_006197193.1"
                     /db_xref="GI:384359341"
                     /db_xref="GeneID:12215506"
                     /translation="MLKKFNKILVANRGEIAIRIFRACSELGIKSVGIYSKEDKYGLF
                     RTKADESYLIGEGKGPIDAYLDMDGIIDLAKRKKVDAIHPGYGFLAENAEFARKCEEN
                     GITFIGPSSKVMNMMGDKINSKKIAKEVNVQTIPGVEKAIRSTEEAKEVANKIGYPVM
                     IKASNGGGGRGMRIVHREEDLELEYETACSESRKAFGEDIIFIEKYIADPKHIEVQIL
                     GDNYGNIVHLYERDCSVQRRHQKIIEYAPAFSLDDKVRKEICEDAVKLSKHVGYSNAG
                     TLEFLVDANGGHYFIEMNTRVQVEHTVTEMVTGIDIVQSQILIAQGYSLDSEEINIKS
                     QDDVEIRGYSIQCRITTEDPKNKFMPDTGKIQVYRTGSGFGIRLDGGNGFTGANISPH
                     YDSLLVKTISWDRTFQGAINKTIRSIKELRVRGVKTNVGFLVNVLNNPIFSNGKCSTK
                     FIDENPDLFEITESKDRGTKLLQFIGDVIVNDNACKEKPLFDALHDPRMDKDGSKSEG
                     SKILFDKLGKSAYIEKIKNDKKLLLTDTTMRDAHQSLLATRIRTYDLLKAAKPTEKYQ
                     KDLFSLEMWGGATYDVAYRFLKESPWRRLQKLREEIPSIMFQMLLRASNGVGYKNYPD
                     NVIEEFTKESARQGIDVFRIFDSLNWVENMKPSINTALETGKIVEATMCYTGDILDKT
                     KTKYNLEYYIKMAQELESLGADIIAIKDMSGLLKPYSAYTLVKELKKNVKAPIHLHTH
                     DTSGNGVATCLMASEAGVDIIDAALESMAGLTSQPSLNAIVEALKNTERDTGIDLFGY
                     DELGKYYKDLRKVYNKFESDLTNSCAEIYNFEIPGGQYTNLKPQADSLGLVNRFDEVK
                     EKYKEANEVVGDIIKVTPSSKVVGDLAIFMTKNKLDKDNIIEEGKNLSFPDSVVDYCK
                     GMIGQPEGGIPKDLQEVVLKGEEAITVRPGSLLPAEDFDEIAKYLNEKYDINANIRNV
                     ISYALYPKVYEDYIKHLQHYNDISKLESDVFFYGLNKNEECEVEIEEGKVLTIRLVEI
                     GEVKENGFRTIGFELNGMVREVEIKDKNFSGKINNVEKADMNDPLQIGASIPGKVIKI
                     MVKEEDEVKANQPLIVIEAMKMETIIVAKTDGVIKSIKVKEDDMVEDKQLLMIMK"
     misc_feature    40043..43471
                     /locus_tag="CDBI1_00120"
                     /note="pyruvate carboxylase; Reviewed; Region: PRK12999"
                     /db_xref="CDD:237263"
     misc_feature    40055..40381
                     /locus_tag="CDBI1_00120"
                     /note="Carbamoyl-phosphate synthase L chain, N-terminal
                     domain; Region: CPSase_L_chain; pfam00289"
                     /db_xref="CDD:201133"
     misc_feature    40397..41020
                     /locus_tag="CDBI1_00120"
                     /note="Carbamoyl-phosphate synthase L chain, ATP binding
                     domain; Region: CPSase_L_D2; pfam02786"
                     /db_xref="CDD:190425"
     misc_feature    41078..41401
                     /locus_tag="CDBI1_00120"
                     /note="Biotin carboxylase C-terminal domain; Region:
                     Biotin_carb_C; smart00878"
                     /db_xref="CDD:214878"
     misc_feature    41639..42487
                     /locus_tag="CDBI1_00120"
                     /note="Pyruvate carboxylase and Transcarboxylase 5S,
                     carboxyltransferase domain; Region: DRE_TIM_PC_TC_5S;
                     cd07937"
                     /db_xref="CDD:163675"
     misc_feature    order(41657..41662,41669..41671,41759..41761,41771..41773,
                     41870..41872,41876..41878,42059..42061,42167..42169,
                     42254..42256,42260..42262,42362..42364)
                     /locus_tag="CDBI1_00120"
                     /note="active site"
                     /db_xref="CDD:163675"
     misc_feature    order(41657..41662,41759..41761)
                     /locus_tag="CDBI1_00120"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:163675"
     misc_feature    order(41660..41662,42167..42169,42254..42256,42260..42262)
                     /locus_tag="CDBI1_00120"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:163675"
     misc_feature    order(42188..42190,42194..42196,42269..42271,42275..42277,
                     42281..42283,42293..42298,42338..42343,42347..42349,
                     42377..42379,42395..42397,42437..42439)
                     /locus_tag="CDBI1_00120"
                     /note="homodimer binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:163675"
     misc_feature    43268..43468
                     /locus_tag="CDBI1_00120"
                     /note="The biotinyl-domain or biotin carboxyl carrier
                     protein (BCCP) domain is present in all biotin-dependent
                     enzymes, such as acetyl-CoA carboxylase, pyruvate
                     carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
                     carboxylase, geranyl-CoA carboxylase; Region:
                     biotinyl_domain; cd06850"
                     /db_xref="CDD:133459"
     misc_feature    order(43337..43339,43364..43372,43391..43393)
                     /locus_tag="CDBI1_00120"
                     /note="carboxyltransferase (CT) interaction site; other
                     site"
                     /db_xref="CDD:133459"
     misc_feature    43367..43369
                     /locus_tag="CDBI1_00120"
                     /note="biotinylation site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:133459"
     gene            43716..45644
                     /locus_tag="CDBI1_00125"
                     /db_xref="GeneID:12215507"
     CDS             43716..45644
                     /locus_tag="CDBI1_00125"
                     /note="COG0480 Translation elongation factors (GTPases)"
                     /codon_start=1
                     /transl_table=11
                     /product="putative translation elongation factor"
                     /protein_id="YP_006197194.1"
                     /db_xref="GI:384359342"
                     /db_xref="GeneID:12215507"
                     /translation="MKVYDSKMLRNVAVLGHSGCGKTNLIETIAYTANTNKIPKLTDK
                     VNMTYSMGLIPIEYNDYKFNLLDTPGYFDFSGDVVSSLRASDAAIIVIDATAPIQVGT
                     EKSLELTESIPKIMFINKIDNEKARYKDAIAMLREKYNNKIVPMISPIYKDKNFVKLH
                     NVFENIDDLEGEFKEQAMSVKEALMELIAETDDQILDKYFNGEELTTEEIQKGIIIGI
                     QRGDIIPVICGSTINNIGTKEILDTISSYLEPIFTEESKPFRGLVFKTMVDPFVGKMS
                     YIKITEGVLSKDKDVFNINKNVKEKIANIYTLRNSELVEIEKAKAGDIVVITKVNSLK
                     TGDTISADKDAEALEKIDFPKPQIYYAVTPKNKGDEEKVASVLNKLVEEDPTLHWYRN
                     TETKQALLGGQGELHIKTIKNKMKDKFGVDVELNDLKVPYRETIKGTADVQGKHKKQS
                     GGHGQYGDVKIRFERCESDFEFTEEIFGGSVPKQYIPAVEKGLKDSMQKGILAGYPVT
                     NIKATLYDGSYHDVDSSEMAFKMAASAAFKKGMEEAHPILLEPIMKLKITVPEEYMGD
                     VMGDINKRRGKIFGMEPDDKGKQIIFAEAPQAETFKYAIDLRAMTQGRGYFEMELERY
                     GEVPSQFAEKIIGLATAK"
     misc_feature    43746..44459
                     /locus_tag="CDBI1_00125"
                     /note="Rat sarcoma (Ras)-like superfamily of small
                     guanosine triphosphatases (GTPases); Region:
                     Ras_like_GTPase; cl17170"
                     /db_xref="CDD:247724"
     misc_feature    43758..45623
                     /locus_tag="CDBI1_00125"
                     /note="elongation factor G; Reviewed; Region: PRK12740"
                     /db_xref="CDD:237186"
     misc_feature    43761..43784
                     /locus_tag="CDBI1_00125"
                     /note="G1 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    order(43767..43787,43923..43925,44070..44075,44079..44081,
                     44403..44411)
                     /locus_tag="CDBI1_00125"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206648"
     misc_feature    43854..43856
                     /locus_tag="CDBI1_00125"
                     /note="G2 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    43869..43877
                     /locus_tag="CDBI1_00125"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206648"
     misc_feature    43914..43925
                     /locus_tag="CDBI1_00125"
                     /note="G3 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    order(43920..43925,43971..43976)
                     /locus_tag="CDBI1_00125"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206648"
     misc_feature    44070..44081
                     /locus_tag="CDBI1_00125"
                     /note="G4 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    44403..44411
                     /locus_tag="CDBI1_00125"
                     /note="G5 box; other site"
                     /db_xref="CDD:206648"
     misc_feature    44490..44735
                     /locus_tag="CDBI1_00125"
                     /note="EFG_mtEFG_II: this subfamily represents the domain
                     II of elongation factor G (EF-G) in bacteria and, the
                     C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
                     and G2 (mtEFG2)_like proteins found in eukaryotes. During
                     the process of peptide synthesis...; Region: EFG_mtEFG_II;
                     cd04088"
                     /db_xref="CDD:239755"
     misc_feature    45009..45350
                     /locus_tag="CDBI1_00125"
                     /note="Elongation Factor G-like domain IV. This family
                     includes the translational elongation factor termed EF-2
                     (for Archaea and Eukarya) and EF-G (for Bacteria),
                     ribosomal protection proteins that mediate tetracycline
                     resistance and, an evolutionarily...; Region: EFG_like_IV;
                     cl02789"
                     /db_xref="CDD:243187"
     misc_feature    45363..45599
                     /locus_tag="CDBI1_00125"
                     /note="EFG_mtEFG_C: domains similar to the C-terminal
                     domain of the bacterial translational elongation factor
                     (EF) EF-G.  Included in this group is the C-terminus of
                     mitochondrial Elongation factor G1 (mtEFG1) and G2
                     (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
                     EFG_mtEFG_C; cd03713"
                     /db_xref="CDD:239683"
     gene            46097..46561
                     /locus_tag="CDBI1_00130"
                     /db_xref="GeneID:12215508"
     CDS             46097..46561
                     /locus_tag="CDBI1_00130"
                     /note="COG4463 Transcriptional repressor of class III
                     stress genes"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator CtsR"
                     /protein_id="YP_006197195.1"
                     /db_xref="GI:384359343"
                     /db_xref="GeneID:12215508"
                     /translation="MATMTDIIEKFIKDLMEEDNSIQIQRNELANLFSCAPSQINYVL
                     TTRFTIDRGYYIESKKGGGGYVQIEKIRKSKDGHIRELLNEKIGSQISYKKAKELLEG
                     LKESDLINERELKLILYAIDDKSLCMPIYELKEKVRSNILKNIIIGLFSIEE"
     misc_feature    46100..46546
                     /locus_tag="CDBI1_00130"
                     /note="Firmicute transcriptional repressor of class III
                     stress genes (CtsR); Region: CtsR; pfam05848"
                     /db_xref="CDD:147806"
     gene            46568..47062
                     /locus_tag="CDBI1_00135"
                     /db_xref="GeneID:12215509"
     CDS             46568..47062
                     /locus_tag="CDBI1_00135"
                     /note="COG3880 Uncharacterized protein with conserved CXXC
                     pairs"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
                     /protein_id="YP_006197196.1"
                     /db_xref="GI:384359344"
                     /db_xref="GeneID:12215509"
                     /translation="MLCQKCNKNKASVYYNKIVNGEKTEMYLCSECAKENTEMNFNLD
                     MPFSMMDIFSNLGFQPKKELEEKLVCPKCNTTYSEFKNNGRFGCSECYNAFSSQVNPM
                     LQNIHGHIEHTGKAPKKSFYKISVENEIKELKEDLDRAIKNEEYELAAQFRDKIKYLK
                     GSID"
     misc_feature    46568..47047
                     /locus_tag="CDBI1_00135"
                     /note="Modulator of heat shock repressor CtsR, McsA
                     [Signal transduction    mechanisms]; Region: COG3880"
                     /db_xref="CDD:226397"
     misc_feature    46946..47047
                     /locus_tag="CDBI1_00135"
                     /note="UvrB/uvrC motif; Region: UVR; pfam02151"
                     /db_xref="CDD:145355"
     gene            47096..48103
                     /locus_tag="CDBI1_00140"
                     /db_xref="GeneID:12215510"
     CDS             47096..48103
                     /locus_tag="CDBI1_00140"
                     /note="COG3869 Arginine kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP:guanido phosphotransferase"
                     /protein_id="YP_006197197.1"
                     /db_xref="GI:384359345"
                     /db_xref="GeneID:12215510"
                     /translation="MKSRVRLARNLNNYPFPNKLDKECAMEIIEKVKNAFINSNLEQK
                     EEFDFYKIEDLDQSKKMLMVEEHIISPDLAENDKSAVIVKKDKTISIMINEEDHIRIQ
                     TICDDLNLEYAYSVANEIDDLLESSLEYAFNTKLGYLTSCPTNTGTGMRASVMMHLPA
                     LSQLGYMDELYKISSQIGIAIRGIYGERTEALGNIYQISNQLTLGRTESNIIENVSGL
                     TKDAISKEIKAREILQKKLGIKLEDKIFRSIGTLENSRVMSSAEAMSHLSNIKMGIEM
                     NYIDKLDLRAIEQLMIGIQPAHQSIMYKSDDVENRDINRATYIRETLEKLRGGMNCEL
                     Q"
     misc_feature    47096..48061
                     /locus_tag="CDBI1_00140"
                     /note="ATP:guanido phosphotransferase; Provisional;
                     Region: PRK01059"
                     /db_xref="CDD:234894"
     misc_feature    47096..47782
                     /locus_tag="CDBI1_00140"
                     /note="Phosphagen (guanidino) kinases found in bacteria;
                     Region: bacterial_phosphagen_kinase; cd07930"
                     /db_xref="CDD:153077"
     misc_feature    order(47099..47101,47105..47107,47111..47113,47294..47296,
                     47369..47371,47393..47395,47546..47548,47552..47560,
                     47639..47641,47645..47647,47651..47656,47684..47686)
                     /locus_tag="CDBI1_00140"
                     /note="ADP binding site [chemical binding]; other site"
                     /db_xref="CDD:153077"
     misc_feature    order(47381..47383,47519..47521,47657..47662)
                     /locus_tag="CDBI1_00140"
                     /note="phosphagen binding site; other site"
                     /db_xref="CDD:153077"
     misc_feature    order(47630..47674,47678..47695)
                     /locus_tag="CDBI1_00140"
                     /note="substrate specificity loop; other site"
                     /db_xref="CDD:153077"
     gene            48090..50537
                     /locus_tag="CDBI1_00145"
                     /db_xref="GeneID:12215511"
     CDS             48090..50537
                     /locus_tag="CDBI1_00145"
                     /note="'COG0542 ATPases with chaperone activity,
                     ATP-binding subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease"
                     /protein_id="YP_006197198.1"
                     /db_xref="GI:384359346"
                     /db_xref="GeneID:12215511"
                     /translation="MNFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEG
                     IAAKVLSKVGFTEAYLEGKIVDMEGKGEEISEDIVLSPRSKQILELSGMFANKLKTNY
                     IGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMMGISDKNQYKAENSYTGNQ
                     NQAESKVLDKYGRNLTLYAKQNKIDPVIGREKEIQRVIQILSRRTKNNPVLIGDPGVG
                     KTAIAEGLATNIALGNVPETLKNKTLYSLEMGSLLAGAKYRGEFEERIKEVVDEVVKN
                     GNIILFIDEMHTIIGAGSTGEGSIDASNILKPALARGEIQVIGATTIDEYRKHVEKDS
                     ALERRFQPVMVDEPTKEDSIKILEGLRDKYEAHHKVKITDDAIKAAVELSTRYISDRY
                     LPDKAIDLIDEAASKVRLKENTPPSEIKKLELEIENIDKEKEEAVRCQDFEKAAKIRD
                     EQGLLKKQLEDVRERWNKSSKHSDLVDGEVIAEVVGLWTGIPVNKILEEEADRLLRLE
                     EILHNRVIGQEQAVKSISKAIRRSRAGLKDPNRPIGSFLFLGPTGVGKTELSKALAEV
                     QFGDENQIIRIDMSEYMEKHAVSRMIGSPPGYVGHDEGGQLTEKVRRNPYSVILFDEI
                     EKAHPDVFNILLQILDDGRLTDSKGRTVDFKNTIVIMTSNVGASTIGRQKTLGFSIAK
                     GDEEEKSQYEKMKENIMGELKQRFRPEFLNRIDDIIVFHSLNENHISKIVLLMAAKLQ
                     ERLKEMDIKLEMSDEAVKLISKSGFDLEYGARPLKRALQKELEDELSEAILKGNVKKG
                     SNVVAKVKDEKIVFETK"
     misc_feature    48102..50534
                     /locus_tag="CDBI1_00145"
                     /note="ATP-binding subunits of Clp protease and DnaK/DnaJ
                     chaperones [Posttranslational modification, protein
                     turnover, chaperones]; Region: clpA; COG0542"
                     /db_xref="CDD:223616"
     misc_feature    48372..48518
                     /locus_tag="CDBI1_00145"
                     /note="Clp amino terminal domain; Region: Clp_N;
                     pfam02861"
                     /db_xref="CDD:217254"
     misc_feature    48651..49112
                     /locus_tag="CDBI1_00145"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    48726..48749
                     /locus_tag="CDBI1_00145"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(48729..48752,48939..48941,49053..49055)
                     /locus_tag="CDBI1_00145"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    48927..48944
                     /locus_tag="CDBI1_00145"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    49104..49106
                     /locus_tag="CDBI1_00145"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    49635..50081
                     /locus_tag="CDBI1_00145"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    49737..49760
                     /locus_tag="CDBI1_00145"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(49740..49763,49953..49955,50079..50081)
                     /locus_tag="CDBI1_00145"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    49941..49958
                     /locus_tag="CDBI1_00145"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    50256..50495
                     /locus_tag="CDBI1_00145"
                     /note="C-terminal, D2-small domain, of ClpB protein;
                     Region: ClpB_D2-small; pfam10431"
                     /db_xref="CDD:204486"
     gene            50717..52090
                     /locus_tag="CDBI1_00150"
                     /db_xref="GeneID:12215512"
     CDS             50717..52090
                     /locus_tag="CDBI1_00150"
                     /note="COG1066 Predicted ATP-dependent serine protease"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="YP_006197199.1"
                     /db_xref="GI:384359347"
                     /db_xref="GeneID:12215512"
                     /translation="MAKIKTKYVCQSCGYETAKWLGKCPECTKWNTFVEEIDQKSTKK
                     EVFIIDKSSSKPVSINSIESKEEERFTTDINELDRVLGGGIVKGSLVLVGGDPGIGKS
                     TLLIQVSSNVANLGKTVLYITGEESESQIKMRAKRLGINSENLYIFAENNLSIIESYL
                     ESVNPELIILDSIQTVFSPEISSAPGTVSQIKEGTSKFMKISKKMGISTFIVGHVTKE
                     GSLAGPKLLEHMVDTVLYFEGERYNTYRLVRAVKNRFGSTNELGVFEMRDLGLVELDN
                     PSKILISEKPKDVAGSVIISTVEGTRPMLLELQALVSPTSFGIPKRTSTGVDYNRVGM
                     LLAVLEKRVGLQIQNQDVYINIVGGIKINEPSIDLGIAISVASSFRNIPIDENIAVTG
                     EVGLTGEVRAVSFIEKRIAECKKLGFKKIVVPRSNYDVVKETKGIEIWPVDNLRQAIN
                     IVLGRNQ"
     misc_feature    50717..52081
                     /locus_tag="CDBI1_00150"
                     /note="DNA repair protein RadA; Provisional; Region:
                     PRK11823"
                     /db_xref="CDD:236994"
     misc_feature    50738..51850
                     /locus_tag="CDBI1_00150"
                     /note="Sms (bacterial radA) DNA repair protein. This
                     protein is not related to archael radA any more than is to
                     other RecA-like NTPases. Sms has a role in recombination
                     and recombinational repair and is responsible for the
                     stabilization or processing of...; Region: Sms; cd01121"
                     /db_xref="CDD:238541"
     misc_feature    50999..51022
                     /locus_tag="CDBI1_00150"
                     /note="Walker A motif/ATP binding site; other site"
                     /db_xref="CDD:238541"
     misc_feature    order(51002..51004,51014..51022,51077..51079,51083..51085,
                     51227..51232)
                     /locus_tag="CDBI1_00150"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238541"
     misc_feature    51218..51229
                     /locus_tag="CDBI1_00150"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:238541"
     misc_feature    <51788..51997
                     /locus_tag="CDBI1_00150"
                     /note="Subunit ChlI of Mg-chelatase; Region: ChlI;
                     pfam13541"
                     /db_xref="CDD:205719"
     gene            52093..53163
                     /locus_tag="CDBI1_00155"
                     /db_xref="GeneID:12215513"
     CDS             52093..53163
                     /locus_tag="CDBI1_00155"
                     /note="COG1623 Predicted nucleic-acid-binding protein
                     (contains the HHH domain)"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA integrity scanning protein DisA"
                     /protein_id="YP_006197200.1"
                     /db_xref="GI:384359348"
                     /db_xref="GeneID:12215513"
                     /translation="MENFLDNKNMLYALKMISPGTPLRLGLNNVLRAKTGGLIVIATN
                     EDVMKIVDGGFAINAEYSPSYLYELAKMDGAIVLSGDVKKILFANAQLIPDYFIETSE
                     TGTRHRTAERVAKQTGAIVIGISQRRNVITVYRGNEKYVVEDISKIFTKANQAIQTLE
                     KYKTVLDQAVTNLNALEFNDLVTIYDVALVMQKMEMVMRVTSIIEKYVIELGDEGTLV
                     SMQLEELMGTTRIDQKLIFKDYNKENTEIKELMKKVKNLNSEELIELVNMAKLLGYSG
                     FSESMDMPIKTRGYRILSKIHRLPTAIIENLVNYFENFQQILDASIEELDEVEGIGEI
                     RATYIKNGLIKMKQLVLLDRHI"
     misc_feature    52108..53160
                     /locus_tag="CDBI1_00155"
                     /note="DNA integrity scanning protein DisA; Provisional;
                     Region: PRK13482"
                     /db_xref="CDD:237395"
     misc_feature    52159..52512
                     /locus_tag="CDBI1_00155"
                     /note="DisA bacterial checkpoint controller
                     nucleotide-binding; Region: DisA_N; pfam02457"
                     /db_xref="CDD:190315"
     misc_feature    52516..52947
                     /locus_tag="CDBI1_00155"
                     /note="DisA bacterial checkpoint controller linker region;
                     Region: DisA-linker; pfam10635"
                     /db_xref="CDD:220829"
     gene            53252..54346
                     /locus_tag="CDBI1_00160"
                     /db_xref="GeneID:12215514"
     CDS             53252..54346
                     /locus_tag="CDBI1_00160"
                     /note="COG4956 Integral membrane protein (PIN domain
                     superfamily)"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197201.1"
                     /db_xref="GI:384359349"
                     /db_xref="GeneID:12215514"
                     /translation="MIRKVTRILFILLGFTIGITTYLTLMKDFEILTFGKETYGYIAA
                     VVAGIIIAILGYLIEPWVVNKVKEIAKIVDKELSKYPQTDILLGSMGLIVGFVIAYLL
                     SGLVNRIPIVGGILSLLLYLFLGYLGMKVALKSKNDLFNIGKLGRLANPIKDKDKDKE
                     NKKEVKAIPPKVLDTSVIIDGRIADICKTGFIEGKLIIPAFVLEELRHIADSSDDLKR
                     VRGRRGLDILNIIQKELNIEVEISERDFDDIAEVDSKLLKLAQVLNGKVVTNDYNLNK
                     VAQFQGVEVLNINELANAIKPVAIPGEDMVVQVVKEGKEAQQGVAYLDDGTMIVVDGG
                     RKYMNETIKVLVTSVLQTPAGRMIFAKPKN"
     misc_feature    53429..54343
                     /locus_tag="CDBI1_00160"
                     /note="Integral membrane protein (PIN domain superfamily)
                     [General function prediction only]; Region: COG4956"
                     /db_xref="CDD:227292"
     misc_feature    53762..54142
                     /locus_tag="CDBI1_00160"
                     /note="PIN domain of Thermus Thermophilus Hb8,
                     uncharacterized Bacillus subtilis YacL, and other
                     bacterial homologs; Region: PIN_YacL; cd09877"
                     /db_xref="CDD:189047"
     misc_feature    order(53771..53773,53864..53866,54008..54010,54062..54064)
                     /locus_tag="CDBI1_00160"
                     /note="putative active site [active]"
                     /db_xref="CDD:189047"
     gene            54475..56652
                     /locus_tag="CDBI1_00165"
                     /db_xref="GeneID:12215515"
     CDS             54475..56652
                     /locus_tag="CDBI1_00165"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197202.1"
                     /db_xref="GI:384359350"
                     /db_xref="GeneID:12215515"
                     /translation="MRKKIISFLATFIIILTSASQYSFADDMSTRGKVIFIDMNRTSM
                     SNMLRIKSLREELDNRGYIGLMNIRGDKGSDDRRSYASMGAGGRANVANEEDINFESS
                     SKDRNIVFESATGKSAKGINNLTINKSINENLNFGEYGSVLGSLGQSLSENGLKASVL
                     GNSDIIENGQLIKNRNLCLTAMDEYGRIPNGNVDTINKKDLSMPYGISTDYDKLIVET
                     KEAYKNNDVVFVELGDTYRLDLYKPNLNEKTYESVKDNIEKNIDVYLKNIFSMVEEND
                     TVYIASAFPSDLDYKNKRRLSPIIKLNGEGKGILSSSTTRREGIVTNLDVGVEILDNF
                     NIKNQNMVGRKYELINRDDNKEFLMDEYQKIVSISSIRSTILNGFVSIVFLSWIVAMI
                     AILFRKHISKNYKETTFFILKELLKIGIVMPLSFMITPIMNFKTPLAISLGIIIITLT
                     IYLISKVLIKNDLKNMLFFTGLTIVIMVIDAGFGSYLMKSNVMSYDCIIGARYYGVGN
                     EYQGVAIGSAIFTFAILLTYKNIPKWSIIVFSLVILITSASPIMGANVGSAISECVAF
                     LLFILLIYNVKIDFKKIVLLGIAVLFVLGVFVAIDMILGSNSHLGMFVKEIYFNGPGE
                     IIQTFSRKIEMNLKLAQTSAWVNILLTGIGVILVLMINQIRYFKQLMDEYPIVFKGFI
                     ASIAGCLVTLLVNDSGIVSSATAFIYVIVPMITLSINLTALKE"
     gene            complement(56838..57683)
                     /locus_tag="CDBI1_00170"
                     /db_xref="GeneID:12215516"
     CDS             complement(56838..57683)
                     /locus_tag="CDBI1_00170"
                     /note="COG2207 AraC-type DNA-binding domain-containing
                     proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="YP_006197203.1"
                     /db_xref="GI:384359351"
                     /db_xref="GeneID:12215516"
                     /translation="MNRNNFSHEIIEPIDNLDVNFKLFDDSGSYVANHWHNSLEIIYI
                     TSGDLQINMEGYTYNLKANECMFINSGIIHSTRCTYQDTSILLQVPLSFLNKYIPDFK
                     NCYFDFKVNANDNNYKKNSGKVKLILENMREIKLSSPPAANLLFTSLLFELLFELYTN
                     FKISVGNKNMKKTVLDLSKFEPVLEYTKINYKMPISINKIAKVAHLQPEYFCRKFKQY
                     MGQTYLEYLNDVRISHIYKDLINTNDTLCSILEAHGFTNTKLFYRIFKEKFKCTPKHI
                     RKKST"
     misc_feature    complement(57423..57602)
                     /locus_tag="CDBI1_00170"
                     /note="Cupin domain; Region: Cupin_2; pfam07883"
                     /db_xref="CDD:219618"
     misc_feature    complement(57000..57116)
                     /locus_tag="CDBI1_00170"
                     /note="Bacterial regulatory helix-turn-helix proteins,
                     AraC family; Region: HTH_AraC; pfam00165"
                     /db_xref="CDD:215763"
     misc_feature    complement(56853..57104)
                     /locus_tag="CDBI1_00170"
                     /note="helix_turn_helix, arabinose operon control protein;
                     Region: HTH_ARAC; smart00342"
                     /db_xref="CDD:197666"
     gene            57900..59066
                     /locus_tag="CDBI1_00175"
                     /db_xref="GeneID:12215517"
     CDS             57900..59066
                     /locus_tag="CDBI1_00175"
                     /note="COG2730 Endoglucanase"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucosidase"
                     /protein_id="YP_006197204.1"
                     /db_xref="GI:384359352"
                     /db_xref="GeneID:12215517"
                     /translation="MYIKGVNLGGWLVLEKWMTSSLFEGTEAEDEYYLPRQLSREAYE
                     SRIKTHRSEYITERDFATIKSMGFNSVRIPVPYFIFGDCEPFIGCVKELDKAFAWADK
                     YGLSILIDLHTVPGSQNGFDNGGISGICSWSQNPEYVAFTLNVLERLAKRYGMRHELY
                     GIQILNEPITERMWNIMNVPNRFKAVDKEMARGSKPNSLEFLRDFYIKAYKVMRPYMR
                     EENVIVFHDAFELKAWKDFMREEEFKNIVLDTHQYLMLAESDGCEQSIDSYLKYIREN
                     YAKDILQMQKYFPVICGEWSLFNSYACGIDTNGGQSPLNGIESNIDKLSKDDKRELYR
                     KIAKAQLDAWRNGSGHYYWNYKLLLDTVNEEGWIGWDSWDLGKCVAQEWYPIEY"
     misc_feature    57903..>58424
                     /locus_tag="CDBI1_00175"
                     /note="Endoglucanase [Carbohydrate transport and
                     metabolism]; Region: BglC; COG2730"
                     /db_xref="CDD:225344"
     gene            59088..60734
                     /locus_tag="CDBI1_00180"
                     /db_xref="GeneID:12215518"
     CDS             59088..60734
                     /locus_tag="CDBI1_00180"
                     /note="COG3507 Beta-xylosidase"
                     /codon_start=1
                     /transl_table=11
                     /product="xylan 1,4-beta-xylosidase"
                     /protein_id="YP_006197205.1"
                     /db_xref="GI:384359353"
                     /db_xref="GeneID:12215518"
                     /translation="MIKNPILPGFNPDPCICRKGDDYYLVVSSFEWFPGIPVYHSKDL
                     KNWELYTHILTDETKIDLKKLPSSKGIWAPCLTYCEEEDLFYIVYGIMNSMNARYFDV
                     DNYLITSKDIKGEWSEPVYIHSSGFDASILHDDDGKKWIASLDWETREGYEKPGVICL
                     VEYCTKKKEIVGYPKRIWSGGTDRGCIEAPHITKRGDYYYIMCAEGGTGYGHSVTMGR
                     AKNIWRPYEKDSMNPIVTSIPGDFYERHDPDHLKPKYYNPESKLQKSGHGSYIETTSG
                     EVYLVHLTSRPFVPELRCTLGRETAIQKMKWTKDNWLRMEDESNLAKEYVSESKLEEH
                     LVSSIPSFDDFDSNVLGLQYYAPRISPLSFADVKSRPGYVRIRGQESRTSLNKVSILA
                     RKLTSVYARITTKMEFYPEVHQHSAGLIMYYDNMNYINLRKYYSETLGQSALSIIHLE
                     NGEKTEFLNTRIPIKDIPIYLRLYIQGRKSYFEWSYDEKNYQRIGKVFDTTKFSDEYC
                     KYGEFTGTFIGLTCADRVKHKHYADFDFFEYIADESKDVD"
     misc_feature    59088..60704
                     /locus_tag="CDBI1_00180"
                     /note="Beta-xylosidase [Carbohydrate transport and
                     metabolism]; Region: XynB; COG3507"
                     /db_xref="CDD:226038"
     misc_feature    59097..60032
                     /locus_tag="CDBI1_00180"
                     /note="Glycosyl hydrolase family 43, beta-D-xylosidase;
                     Region: GH43_XYL_1; cd09000"
                     /db_xref="CDD:185741"
     misc_feature    order(59124..59126,59175..59177,59301..59306,59466..59471,
                     59649..59651,59706..59711,59886..59888,59979..59981)
                     /locus_tag="CDBI1_00180"
                     /note="inhibitor binding site; inhibition site"
                     /db_xref="CDD:185741"
     misc_feature    order(59124..59126,59469..59471,59649..59651)
                     /locus_tag="CDBI1_00180"
                     /note="active site"
                     /db_xref="CDD:185741"
     gene            60831..62204
                     /locus_tag="CDBI1_00185"
                     /db_xref="GeneID:12215519"
     CDS             60831..62204
                     /locus_tag="CDBI1_00185"
                     /note="COG2211 Na+/melibiose symporter and related
                     transporters"
                     /codon_start=1
                     /transl_table=11
                     /product="xylose transporter"
                     /protein_id="YP_006197206.1"
                     /db_xref="GI:384359354"
                     /db_xref="GeneID:12215519"
                     /translation="MNTEVNVKATTIRYEKISFFERISYGCGDLGCNIIYSAMSAFLL
                     FYYTNYADVSAAAVGSIMLVSRILDGFSDLTMGIIVDRTKSKYGKARPWILRMAIPFA
                     IAAVLLFSVPSNLGITSKLIYIFITYNLVSTVIYTAINVPYATLNSLITQNQYERGVL
                     SIFRMILATCGTLLINGLTLPLVEYFGNNLSAWTKTFFVFGIASIMVFFITFTGTKER
                     VKAVKQDRNEVIPFKIGIKSLFRNKYWIQITLCLVCIFIVFAINGGSSVYYAKFILGD
                     EKLFGPINMVSNISQIIAMFMVAPFIKKFGKRNVLIVGSIILISSNVMFIIVGQNYIG
                     VIFASAIKGIGSAGIASTMFAIVSDTIEYGEWKTGYRTEGLINSASSFGFKVGNGLGS
                     AILGAVLSIGGYVGTSATQSDLAIVSIKVCFIYLPIFITILQIIIMFFYKLDKEYSTI
                     LNELNTK"
     misc_feature    60873..62099
                     /locus_tag="CDBI1_00185"
                     /note="melibiose:sodium symporter; Provisional; Region:
                     PRK10429; cl15392"
                     /db_xref="CDD:199528"
     misc_feature    60897..62165
                     /locus_tag="CDBI1_00185"
                     /note="MFS/sugar transport protein; Region: MFS_2;
                     pfam13347"
                     /db_xref="CDD:222060"
     gene            62649..63602
                     /locus_tag="CDBI1_00190"
                     /db_xref="GeneID:12215520"
     CDS             62649..63602
                     /locus_tag="CDBI1_00190"
                     /note="'COG2390 Transcriptional regulator, contains sigma
                     factor-related N-terminal domain'"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="YP_006197207.1"
                     /db_xref="GI:384359355"
                     /db_xref="GeneID:12215520"
                     /translation="MKKIGDLRLMMKCCSLYYEDNLNQQEIANQLGISRPTISRILKE
                     AFEQGIVKIQIVDVLKNDYQKIERSLERKYKLKEVIVVDDKQDALTQKQELARAVSEY
                     LTRVVKENDIIGVSIGTTLKEIPRYVEKSNCKNVTFIPLLGGIGDNEIDIHANQIAVS
                     LARAFGGDFKLLHAPAVMSDLSTKEKLCKDEKIKEVLDLIDKTTIAIVGIGNPMSLNS
                     TIMASGYMNEADIEDLKKYNSIGAICLQAFDKEGKTSILEFNQRVLGVKLEDLKKIKR
                     TIGVASGDEKIEAIKASLKAKFINSLAINHSLALKLLEDCD"
     misc_feature    62649..63593
                     /locus_tag="CDBI1_00190"
                     /note="Transcriptional regulator, contains sigma
                     factor-related N-terminal domain [Transcription]; Region:
                     DeoR; COG2390"
                     /db_xref="CDD:225263"
     misc_feature    <62712..62810
                     /locus_tag="CDBI1_00190"
                     /note="helix_turn_helix, cAMP Regulatory protein
                     C-terminus; DNA binding domain of prokaryotic regulatory
                     proteins belonging to the catabolite activator protein
                     family; Region: HTH_CRP; cd00092"
                     /db_xref="CDD:238044"
     misc_feature    order(62715..62723,62748..62750)
                     /locus_tag="CDBI1_00190"
                     /note="non-specific DNA interactions [nucleotide binding];
                     other site"
                     /db_xref="CDD:238044"
     misc_feature    62748..62768
                     /locus_tag="CDBI1_00190"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238044"
     misc_feature    order(62751..62756,62766..62768)
                     /locus_tag="CDBI1_00190"
                     /note="sequence specific DNA binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238044"
     misc_feature    62751..62756
                     /locus_tag="CDBI1_00190"
                     /note="putative cAMP binding site [chemical binding];
                     other site"
                     /db_xref="CDD:238044"
     misc_feature    62841..63590
                     /locus_tag="CDBI1_00190"
                     /note="Putative sugar-binding domain; Region: Sugar-bind;
                     pfam04198"
                     /db_xref="CDD:217959"
     gene            63640..64602
                     /locus_tag="CDBI1_00195"
                     /db_xref="GeneID:12215600"
     CDS             63640..64602
                     /locus_tag="CDBI1_00195"
                     /note="'COG1071 Pyruvate/2-oxoglutarate dehydrogenase
                     complex, dehydrogenase (E1) component, eukaryotic type,
                     alpha subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin:2,6-dichlorophenolindophenol
                     oxidoreductase subunit alpha"
                     /protein_id="YP_006197208.1"
                     /db_xref="GI:384359356"
                     /db_xref="GeneID:12215600"
                     /translation="MSISKETLLEMYKRMNQARKFEEKVSWFFARGMVHGTTHLSVGQ
                     EASSVAAVMALEKGDLVSLTHRGHSQFIGMGIDLNKMMAELMGKETGFCKGKGGSMHI
                     ADIESGNLGANGVVGGGLTIAPGAALTQQYKKTGKIVLCSFGDGASNEGTFHEGINLS
                     SIWKLPIIFYCENNLYGMSTSIKRHMNIESIATRAASYGIEGISIDGYNPIEVYETVQ
                     KAAEKCRRGEGPVLIESRTYRWLGHSKSDANVYRTKEEIESWKAKDPIEFLKNYLIEN
                     NLSNEDELDKIQEFAKQSIEDAVEFAQNSPNPKIESLLEDVYAD"
     misc_feature    63652..64596
                     /locus_tag="CDBI1_00195"
                     /note="pyruvate dehydrogenase E1 component, alpha subunit;
                     Region: PDH_E1_alph_y; TIGR03182"
                     /db_xref="CDD:234139"
     misc_feature    63670..64545
                     /locus_tag="CDBI1_00195"
                     /note="Thiamine pyrophosphate (TPP) family, E1 of
                     PDC_ADC_BCADC subfamily, TPP-binding module; composed of
                     proteins similar to the E1 components of the human
                     pyruvate dehydrogenase complex (PDC), the acetoin
                     dehydrogenase complex (ADC) and the branched chain...;
                     Region: TPP_E1_PDC_ADC_BCADC; cd02000"
                     /db_xref="CDD:238958"
     misc_feature    order(63742..63744,63898..63900,63979..63984,64075..64077,
                     64081..64092,64099..64101,64111..64113,64123..64125,
                     64168..64179,64219..64221,64234..64236,64387..64389)
                     /locus_tag="CDBI1_00195"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238958"
     misc_feature    order(63832..63837,63979..63981,63985..63987,64069..64080,
                     64159..64161,64165..64167,64366..64368)
                     /locus_tag="CDBI1_00195"
                     /note="TPP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238958"
     misc_feature    order(63964..63966,63970..63972,63976..63978,63991..63993,
                     64000..64005,64012..64017,64021..64026,64033..64035,
                     64090..64095,64111..64116,64123..64125)
                     /locus_tag="CDBI1_00195"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238958"
     misc_feature    order(64351..64371,64375..64377,64378..64404,64426..64434)
                     /locus_tag="CDBI1_00195"
                     /note="phosphorylation loop region [posttranslational
                     modification]"
                     /db_xref="CDD:238958"
     gene            64627..65613
                     /locus_tag="CDBI1_00200"
                     /db_xref="GeneID:12215601"
     CDS             64627..65613
                     /locus_tag="CDBI1_00200"
                     /note="'COG0022 Pyruvate/2-oxoglutarate dehydrogenase
                     complex, dehydrogenase (E1) component, eukaryotic type,
                     beta subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin:2,6-dichlorophenolindophenol
                     oxidoreductase subunit beta"
                     /protein_id="YP_006197209.1"
                     /db_xref="GI:384359357"
                     /db_xref="GeneID:12215601"
                     /translation="MSTRELTYAQAIKEAMSEEMRRDENVIFMGEDIGIYGGAFGVSV
                     GMIDEFGPERVRDTPISEAAIAGAAAGAAATGLRPIMEVMFMDFVTISMDAIVNQAAK
                     MRYMFGGKAQVPMVVRCPGGSGTGSAEQHSQSLEAWFCHVPGVKVVAPSTPADAKGLL
                     KAAIRDNNPVIFVENKLLYRKKGFVPEDDYVIEIGKADIKREGTDVTVITYGRMLQSV
                     EEAAETLSKENINVEIIDLRTLYPLDKETIVKSVCKTGRVLICHEAAKTGGLGGEISA
                     LITESESFDYLDAPVKRICGKDVPIPYNPELEKAVVPRVDEIEEAIKSLIVR"
     misc_feature    64639..65604
                     /locus_tag="CDBI1_00200"
                     /note="Pyruvate/2-oxoglutarate dehydrogenase complex,
                     dehydrogenase (E1) component, eukaryotic type, beta
                     subunit [Energy production and conversion]; Region: AcoB;
                     COG0022"
                     /db_xref="CDD:223101"
     misc_feature    64654..65154
                     /locus_tag="CDBI1_00200"
                     /note="Pyrimidine (PYR) binding domain of the beta
                     subunits of the E1 components of human pyruvate
                     dehydrogenase complex (E1- PDHc) and related proteins;
                     Region: TPP_PYR_E1-PDHc-beta_like; cd07036"
                     /db_xref="CDD:132919"
     misc_feature    order(64696..64698,64702..64704,64720..64722,64786..64788,
                     64795..64797,64801..64818,64825..64830,64834..64842,
                     64897..64899,64906..64911,64936..64941,65005..65007,
                     65014..65016,65059..65064,65125..65130)
                     /locus_tag="CDBI1_00200"
                     /note="alpha subunit interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:132919"
     misc_feature    order(64717..64719,64804..64806,64810..64812,64888..64890,
                     64897..64899)
                     /locus_tag="CDBI1_00200"
                     /note="TPP binding site [chemical binding]; other site"
                     /db_xref="CDD:132919"
     misc_feature    order(64720..64722,64795..64797,64801..64812,64894..64899,
                     64903..64905,64918..64920,64930..64932,64939..64941,
                     65005..65007,65011..65016,65038..65040,65044..65049,
                     65053..65055)
                     /locus_tag="CDBI1_00200"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:132919"
     misc_feature    65209..65565
                     /locus_tag="CDBI1_00200"
                     /note="Transketolase, C-terminal domain; Region:
                     Transketolase_C; pfam02780"
                     /db_xref="CDD:217227"
     gene            65626..66672
                     /locus_tag="CDBI1_00205"
                     /db_xref="GeneID:12215602"
     CDS             65626..66672
                     /locus_tag="CDBI1_00205"
                     /note="'COG0508 Pyruvate/2-oxoglutarate dehydrogenase
                     complex, dihydrolipoamide acyltransferase (E2) component,
                     and related enzymes'"
                     /codon_start=1
                     /transl_table=11
                     /product="E2 component of acetoin dehydrogenase enzyme
                     system (dihydrolipoamide acetyltransferase)"
                     /protein_id="YP_006197210.1"
                     /db_xref="GI:384359358"
                     /db_xref="GeneID:12215602"
                     /translation="MVANKIKATPAARSQARKDNIKLDRLIGSGENGRIHLVDVLNYL
                     KDNKANTTPLARRIAEDLNIDLETIVGTGYSGKIRKCDVEKLTAKETIVSNNTSKYSE
                     KKELKIENENSSMFNTVEGIFEKPNPMRATVAKRMSESYFSAPVFTFNIEVDATELKV
                     LRAKLIDTVKESTGVKLTMTDLIVMAVSKILPNHQALNSAWTDEGIFRYKDVNIAIAV
                     GLDEGLYVPVVKNANKKSLKEIAKESKELAEKVKTGKLMPADQEGNTFTISNVGMYGI
                     TTFTPIINMPSSAILGVGATQDKFVPVNGEAKIKPIMNLSLTSDHRVIDGTVAAKFLK
                     DLKELLENPLSMLV"
     misc_feature    65626..66669
                     /locus_tag="CDBI1_00205"
                     /note="dihydrolipoamide acetyltransferase; Provisional;
                     Region: PRK14843"
                     /db_xref="CDD:184847"
     misc_feature    65635..65751
                     /locus_tag="CDBI1_00205"
                     /note="e3 binding domain; Region: E3_binding; pfam02817"
                     /db_xref="CDD:202412"
     misc_feature    65779..65880
                     /locus_tag="CDBI1_00205"
                     /note="e3 binding domain; Region: E3_binding; pfam02817"
                     /db_xref="CDD:202412"
     misc_feature    66034..66669
                     /locus_tag="CDBI1_00205"
                     /note="2-oxoacid dehydrogenases acyltransferase (catalytic
                     domain); Region: 2-oxoacid_dh; pfam00198"
                     /db_xref="CDD:215782"
     gene            66839..68569
                     /locus_tag="CDBI1_00210"
                     /db_xref="GeneID:12215603"
     CDS             66839..68569
                     /locus_tag="CDBI1_00210"
                     /note="'COG0508 Pyruvate/2-oxoglutarate dehydrogenase
                     complex, dihydrolipoamide acyltransferase (E2) component,
                     and related enzymes'"
                     /codon_start=1
                     /transl_table=11
                     /product="E3 component of acetoin dehydrogenase enzyme
                     system (dihydrolipoyl dehydrogenase)"
                     /protein_id="YP_006197211.1"
                     /db_xref="GI:384359359"
                     /db_xref="GeneID:12215603"
                     /translation="MSVEVIMPKAGVAMEEGTIVSWLKQEGEEVKIGEPILEITTDKV
                     NMEIESEGEGTLAVIIHKEEGEVLPVFTVIGVIAEKGENQEEVKAKYLSGNVSKEDIV
                     EENQNIEVKEEKINKKECNHDYDVVVIGGGPGGYLSALKAALLGGRVALVEENILGGT
                     CLNRGCIPTKTYIKTAEILEEIDQLSKRGVKVTVDKEQDIKKAIKYKNRVVKKLTAGV
                     GGLLKSRDVDVFNLKASVKEEHKVILSDGKVLDTENIIIATGSKVRILPIKGIESNLI
                     ITSTEALDLETVPEELVIIGGGVIGCEFAEIFNSRGSKVTIVEMEDRVIPRMDKELSE
                     SLKYSLSKKGINVLTKKKVSEFKEEGNNILVCIEGEVPIKADLCLYAIGREANLSGIE
                     DLDIKIDKGSIVVNSKMETSIPSIYAVGDVTGGVMLAHAAFKMGEVAASNALGVNKEV
                     DLGALPSCVYTIPEVASVGITEEDARKKYNVKVGKFNFAGNGRALASGQEQGYVKVVA
                     DAKYGEILGIHMFGCGVAELINHAASFKALEIPTDEASELIFGHPCTSEALMEALADV
                     NGECLHLPKK"
     misc_feature    66845..67069
                     /locus_tag="CDBI1_00210"
                     /note="Lipoyl domain of the dihydrolipoyl acyltransferase
                     component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
                     dehydrogenase multienzyme complexes, like pyruvate
                     dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
                     and branched-chain 2-oxo acid...; Region: lipoyl_domain;
                     cd06849"
                     /db_xref="CDD:133458"
     misc_feature    order(66935..66937,66956..66973,66983..66985)
                     /locus_tag="CDBI1_00210"
                     /note="E3 interaction surface; other site"
                     /db_xref="CDD:133458"
     misc_feature    66965..66967
                     /locus_tag="CDBI1_00210"
                     /note="lipoyl attachment site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:133458"
     misc_feature    67208..68554
                     /locus_tag="CDBI1_00210"
                     /note="dihydrolipoamide dehydrogenase; Region:
                     lipoamide_DH; TIGR01350"
                     /db_xref="CDD:233368"
     misc_feature    67208..>67294
                     /locus_tag="CDBI1_00210"
                     /note="Anaerobic glycerol-3-phosphate dehydrogenase [Amino
                     acid transport and metabolism]; Region: GlpB; cl17730"
                     /db_xref="CDD:248284"
     misc_feature    67742..67948
                     /locus_tag="CDBI1_00210"
                     /note="Pyridine nucleotide-disulphide oxidoreductase;
                     Region: Pyr_redox; pfam00070"
                     /db_xref="CDD:215691"
     misc_feature    68204..68524
                     /locus_tag="CDBI1_00210"
                     /note="Pyridine nucleotide-disulphide oxidoreductase,
                     dimerisation domain; Region: Pyr_redox_dim; pfam02852"
                     /db_xref="CDD:217252"
     gene            68987..71935
                     /locus_tag="CDBI1_00215"
                     /db_xref="GeneID:12215604"
     CDS             68987..71935
                     /locus_tag="CDBI1_00215"
                     /note="COG1221 Transcriptional regulators containing an
                     AAA-type ATPase domain and a DNA-binding domain"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="YP_006197212.1"
                     /db_xref="GI:384359360"
                     /db_xref="GeneID:12215604"
                     /translation="MRQRIKNLIENEDKKNPLTDEAISSRLNIRREDVTFLRNELKIE
                     DSRQRRKVVLIKAIKDILKEEKTINKNDITRRLNSIGFTVSRFTVIQYLKEIQDSGDL
                     KLDKESDDKKEEIINNRENKDIAFDKLIGSSGSLSTIIKLAKAAILYPPHGLHTIIMG
                     PTGVGKSELAECMYKFAVESSRFPKNAPFIVFNAADYSENPQLLLSQLFGHVKGAFTG
                     ADENKEGLVSKADGGILFIDEIHRLPHEGQEILFQLIDKGMVRKLGETRLTHKIDVMI
                     ISATSEPIDSHLLNTFKRRIPVTIEIPELVARPLNERFDIINNFFLIEAQRMGANIHI
                     KSDVLKALMLYDCIGNVGQLRSDIQVACARGLLNQLTNKLKEVNISISDVPGYVKQGL
                     IKIRNCRGKIENYVDGDLIIDSNLQGEIEKKNEDIYTFPDEIYKLTERRHIDLLEQGL
                     DFDVINRIIGGELESCIQKYIKQVKKVSISNNLPDISPIVGKYIVELTYEVIKIASQY
                     LSSLEPNLHLCLAVHLKAAFERLKEGKVISNAHLKEIIGNYPLEYSVAEKVAQYLKER
                     YNINLPKEEIGIIAIYFKMSSRRDMSEQKKIGVLLMAHGRVASSVCEVTNKLLGINHA
                     RYLDMPFEKKPEEMIEEATTIIKDIDEGRGVIILVDMGSLSYFGDIISGKTGINIRTI
                     SRFDTLLSIEVIRRAVLPDLTIDEIVDEVKGIEPQVKEKVSKCNNTKVDFRKPIILTL
                     CITGLGGACKIKKILEENIKSITEKVDIEPIGMIEYPSLDLEIKQISNDKNVIAIVGT
                     IDPQIANIPFFSLVDINDKAKLNQINNLIDTNQIGETNKKYELSDLIHKEDIFVDLQV
                     KSKEEVLKYMSKKLREKGYVTKNFYKKVVERDNLFPTELSDEIAIPHTDGIDVIRPAI
                     SIAILKKPIVWSKSKVKIILLLAVDQKCFNPLSTLLSFIETDEFKKIKNIKDRDFIRE
                     MILDGVNENN"
     misc_feature    <68987..69139
                     /locus_tag="CDBI1_00215"
                     /note="Sigma-54, DNA binding domain; Region: Sigma54_DBD;
                     pfam04552"
                     /db_xref="CDD:218144"
     misc_feature    69437..69898
                     /locus_tag="CDBI1_00215"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    69440..69880
                     /locus_tag="CDBI1_00215"
                     /note="ATPases associated with a variety of cellular
                     activities; Region: AAA; smart00382"
                     /db_xref="CDD:214640"
     misc_feature    69464..69487
                     /locus_tag="CDBI1_00215"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(69467..69490,69698..69700,69827..69829)
                     /locus_tag="CDBI1_00215"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    69686..69703
                     /locus_tag="CDBI1_00215"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    69869..69871
                     /locus_tag="CDBI1_00215"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    70481..70744
                     /locus_tag="CDBI1_00215"
                     /note="PRD domain; Region: PRD; pfam00874"
                     /db_xref="CDD:201484"
     misc_feature    70775..71122
                     /locus_tag="CDBI1_00215"
                     /note="PTS_IIA, PTS system, mannose/sorbose specific IIA
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This family...; Region:
                     PTS_IIA_man; cl00025"
                     /db_xref="CDD:241558"
     misc_feature    order(70796..70798,70838..70843,70871..70873,70973..70975,
                     71069..71071)
                     /locus_tag="CDBI1_00215"
                     /note="active pocket/dimerization site"
                     /db_xref="CDD:237978"
     misc_feature    order(70796..70798,70964..70966,70973..70975)
                     /locus_tag="CDBI1_00215"
                     /note="active site"
                     /db_xref="CDD:237978"
     misc_feature    70796..70798
                     /locus_tag="CDBI1_00215"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:237978"
     misc_feature    71519..71908
                     /locus_tag="CDBI1_00215"
                     /note="PTS_IIA, PTS system, fructose/mannitol specific IIA
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This...; Region: PTS_IIA_fru;
                     cd00211"
                     /db_xref="CDD:238129"
     misc_feature    order(71645..71647,71693..71695)
                     /locus_tag="CDBI1_00215"
                     /note="active site"
                     /db_xref="CDD:238129"
     misc_feature    71693..71695
                     /locus_tag="CDBI1_00215"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238129"
     gene            71913..72377
                     /locus_tag="CDBI1_00220"
                     /db_xref="GeneID:12215605"
     CDS             71913..72377
                     /locus_tag="CDBI1_00220"
                     /note="COG1762 Phosphotransferase system
                     mannitol/fructose-specific IIA domain (Ntr-type)"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IIA"
                     /protein_id="YP_006197213.1"
                     /db_xref="GI:384359361"
                     /db_xref="GeneID:12215605"
                     /translation="MESMKIISSNLIFKNIEVSNNEDALKFLGQRLFDEQYVKESYIQ
                     AVVAREKKYATGLPTEIYGVAIPHTDIVHVNEPGIAIGILNKPVKFIMMGTDDTEIDV
                     KVVFMLAVKEPQEQLQLLEKLMTIFQDKNILNNIVDLSEESVSDLLNSKLKN"
     misc_feature    71931..72338
                     /locus_tag="CDBI1_00220"
                     /note="PTS_IIA, PTS system, fructose/mannitol specific IIA
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This...; Region: PTS_IIA_fru;
                     cd00211"
                     /db_xref="CDD:238129"
     misc_feature    order(72057..72059,72114..72116)
                     /locus_tag="CDBI1_00220"
                     /note="active site"
                     /db_xref="CDD:238129"
     misc_feature    72114..72116
                     /locus_tag="CDBI1_00220"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238129"
     gene            72505..72792
                     /locus_tag="CDBI1_00225"
                     /db_xref="GeneID:12215606"
     CDS             72505..72792
                     /locus_tag="CDBI1_00225"
                     /note="'COG3414 Phosphotransferase system,
                     galactitol-specific IIB component'"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IIB"
                     /protein_id="YP_006197214.1"
                     /db_xref="GI:384359362"
                     /db_xref="GeneID:12215606"
                     /translation="MTKKILVACGTGVCTSTIAINKLKKALQDIGKLDMVNITQCKVV
                     EVASKAPDYDLIICTTQVSSSIKTPVINGLPFLTGVGMDKLINDVLEELEL"
     misc_feature    72511..72783
                     /locus_tag="CDBI1_00225"
                     /note="PTS_IIB_galactitol: subunit IIB of enzyme II (EII)
                     of the galactitol-specific
                     phosphoenolpyruvate:carbohydrate phosphotransferase system
                     (PTS).  In this system, EII is a galactitol-specific
                     permease with two cytoplasmic domains (IIA and IIB) and
                     a...; Region: PTS_IIB_galactitol; cd05566"
                     /db_xref="CDD:99908"
     misc_feature    order(72529..72540,72544..72552)
                     /locus_tag="CDBI1_00225"
                     /note="P-loop; other site"
                     /db_xref="CDD:99908"
     misc_feature    order(72529..72531,72535..72540,72547..72552)
                     /locus_tag="CDBI1_00225"
                     /note="active site"
                     /db_xref="CDD:99908"
     misc_feature    72529..72531
                     /locus_tag="CDBI1_00225"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:99908"
     gene            72869..74218
                     /locus_tag="CDBI1_00230"
                     /db_xref="GeneID:12215607"
     CDS             72869..74218
                     /locus_tag="CDBI1_00230"
                     /note="'COG3775 Phosphotransferase system,
                     galactitol-specific IIC component'"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IIC"
                     /protein_id="YP_006197215.1"
                     /db_xref="GI:384359363"
                     /db_xref="GeneID:12215607"
                     /translation="MEILNFIVGLGAQVMMPIIICIFGLILGTKLGKSLRAGLTVGVG
                     FIGLNTIIALLTDNLGPATQQMVKNLGLSLSIIDVGWPAASAIAFASTVGALIIPIGL
                     VVNIVMLITNTTQTVDVDIWDYWHFAFTGALVAGATQSVMWGVFAAVANMVIVLVMAD
                     LTAPGIEEYLGMPGISLPHGFTQAFVPIAIVVNKLLDLIPGINKIEINADTLQKKFGL
                     FGEPLIMGSVIGVIIGIAAKYDIKGILQLGVTMGAVLILIPKMAALLMEGLLPVSEAA
                     QEFIEKRFKNRGKIYIGLDSAVGIGHPVTLSVALVLVPLTILIAAILPGNKVLPFADL
                     AVIPFALVLIVPITKGNVFRTLIIGIIIITSGLLIATNLAPLFTQMALNASFKMPEGA
                     TMISSICDGANPLSWVFVKVMNYKVIGGVVFGVIALGMAIYNRNRIINENKKLSIEE"
     misc_feature    72872..74152
                     /locus_tag="CDBI1_00230"
                     /note="Phosphotransferase system, galactitol-specific IIC
                     component [Carbohydrate transport and metabolism]; Region:
                     GatC; COG3775"
                     /db_xref="CDD:226298"
     misc_feature    72887..74107
                     /locus_tag="CDBI1_00230"
                     /note="PTS system sugar-specific permease component;
                     Region: EIIC-GAT; cl04451"
                     /db_xref="CDD:243764"
     gene            74253..74726
                     /locus_tag="CDBI1_00235"
                     /db_xref="GeneID:12215608"
     CDS             74253..74726
                     /locus_tag="CDBI1_00235"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197216.1"
                     /db_xref="GI:384359364"
                     /db_xref="GeneID:12215608"
                     /translation="MKKYKYDSKRYLLSVTIPGFFMILILIYALFNNYINFNLNIYSL
                     LIIVCTYGIFNTFISSSNPKKIIIDSKCIHFTSFMTTHKYEIKDIEKIRIREFYNKKI
                     YLKINDGDLFKGRYWIRTNMFNNSIALYSYFIELEECLYPDSLRFRNKKFENKNI"
     gene            74898..75548
                     /locus_tag="CDBI1_00240"
                     /db_xref="GeneID:12215609"
     CDS             74898..75548
                     /locus_tag="CDBI1_00240"
                     /note="COG0235 Ribulose-5-phosphate 4-epimerase and
                     related epimerases and aldolases"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphate aldolase"
                     /protein_id="YP_006197217.1"
                     /db_xref="GI:384359365"
                     /db_xref="GeneID:12215609"
                     /translation="MLLEKLRKEVLQASLDLLNYNLVTLTGGNVSGRDEQTGYIAITP
                     SGMDYRNLTPSDIVIVDVDGNIIDGKWKASVDLSDHLYIYKHREDINSIIHTHSTYSS
                     CFAILNEPIECASTTLANEVGGSVPVAKFSPPTFKKMGKCVIEAIGDKRACLLANHGV
                     IAVGPSVGHALTAAVMLEDSAKVYYLAKSIGTPVLLPDEEIQRARDVFFNVYGQDK"
     misc_feature    74904..75539
                     /locus_tag="CDBI1_00240"
                     /note="Class II Aldolase and Adducin head (N-terminal)
                     domain. Aldolases are ubiquitous enzymes catalyzing
                     central steps of carbohydrate metabolism. Based on
                     enzymatic mechanisms, this superfamily has been divided
                     into two distinct classes (Class I and II); Region:
                     Aldolase_II; cl00214"
                     /db_xref="CDD:241692"
     misc_feature    order(74931..74933,74943..74945,74967..74969,75039..75041,
                     75045..75050,75186..75188,75192..75197,75210..75218,
                     75237..75239,75243..75248,75288..75290,75366..75368,
                     75399..75401,75420..75422,75432..75434,75453..75455)
                     /locus_tag="CDBI1_00240"
                     /note="intersubunit interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238232"
     misc_feature    order(74982..74984,75030..75035,75117..75125,75180..75182,
                     75186..75188,75369..75371)
                     /locus_tag="CDBI1_00240"
                     /note="active site"
                     /db_xref="CDD:238232"
     misc_feature    order(75180..75182,75186..75188,75369..75371)
                     /locus_tag="CDBI1_00240"
                     /note="Zn2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238232"
     gene            75722..76654
                     /locus_tag="CDBI1_00245"
                     /db_xref="GeneID:12215610"
     CDS             75722..76654
                     /locus_tag="CDBI1_00245"
                     /note="COG0095 Lipoate-protein ligase A"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate-protein ligase"
                     /protein_id="YP_006197218.1"
                     /db_xref="GI:384359366"
                     /db_xref="GeneID:12215610"
                     /translation="MYYLLNKSTNPYFNLALEEYLFLNDKYNDDIIIIWRNEDSIFIG
                     KNQNPYQEVHHDVIEKGEIPILRRISGGGTVYHDLGNINMSFIQKDRQLHEIDFLEHT
                     KFMQKMLSTLGLDVSITERKDLFLNGKKISGSAQSIKRKNSLYHGTLLYDSDLNKLTK
                     YLNSNKATESNATKSVSSKVTNIKFLLEKDINYFLDYCVEYLKSNIKNIKELELDEED
                     IKSVYNIGEDKYRKIEWTYGKTPKFQVVLPFNNESKINIHVNRWKVSKFFISYDDNVI
                     NMDKLLDLNFFKEEIKESILENYPHYIDLINLIF"
     misc_feature    75722..76438
                     /locus_tag="CDBI1_00245"
                     /note="Lipoate-protein ligase A [Coenzyme metabolism];
                     Region: LplA; COG0095"
                     /db_xref="CDD:223173"
     gene            76928..77641
                     /locus_tag="CDBI1_00250"
                     /db_xref="GeneID:12215611"
     CDS             76928..77641
                     /locus_tag="CDBI1_00250"
                     /note="COG1211 4-diphosphocytidyl-2-methyl-D-erithritol
                     synthase"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="YP_006197219.1"
                     /db_xref="GI:384359367"
                     /db_xref="GeneID:12215611"
                     /translation="MYSVIIVAAGSGRRMNLDINKQFIKLREKEIIAHTIQVFYENIN
                     IDEIVVCIKKEEEDFFKENIINKYNFKNIKIAYGGKERQDSIYNGLKKLDENCDIVLI
                     HDGARPFVDHRIINESIKVAKEKKAVVVGVPVSDTIKIVSDGTVQETPERNLLWAAQT
                     PQTFEYNLIIDAYEQAYKNNYYGTDDSMLVENIGQSVTMVMGSYENIKITSPEDLNIA
                     EQILNMEKRDEVNSRRRII"
     misc_feature    76931..77581
                     /locus_tag="CDBI1_00250"
                     /note="CDP-ME synthetase is involved in
                     mevalonate-independent isoprenoid production; Region:
                     CDP-ME_synthetase; cd02516"
                     /db_xref="CDD:133009"
     misc_feature    order(76946..76948,76952..76969,76988..76990,77162..77173,
                     77180..77182,77237..77245,77549..77551)
                     /locus_tag="CDBI1_00250"
                     /note="substrate binding site; other site"
                     /db_xref="CDD:133009"
     misc_feature    order(77246..77248,77303..77305,77327..77329,77333..77335,
                     77384..77401,77477..77482,77486..77491,77498..77500,
                     77513..77524,77534..77539)
                     /locus_tag="CDBI1_00250"
                     /note="dimer interface; other site"
                     /db_xref="CDD:133009"
     gene            77638..78123
                     /locus_tag="CDBI1_00255"
                     /db_xref="GeneID:12215612"
     CDS             77638..78123
                     /locus_tag="CDBI1_00255"
                     /note="'COG0245 2C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase'"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="YP_006197220.1"
                     /db_xref="GI:384359368"
                     /db_xref="GeneID:12215612"
                     /translation="MRIGLGYDVHKLTENRKLIIGGVEIPHDKGLLGHSDADVLIHAI
                     MDSILGALALGDIGKHFPDTDEEYKGADSMKLLEHVYNLITSKGYKIGNIDSTIIAQS
                     PKMAPYIESMRSNISKVLNTDIDNINIKATTEEGLGFTGAKQGIASQSICLLLLTSQN
                     N"
     misc_feature    77641..78099
                     /locus_tag="CDBI1_00255"
                     /note="MECDP_synthase
                     (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase),
                     encoded by the ispF gene, catalyzes the formation of
                     2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the
                     non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid
                     biosynthesis; Region: MECDP_synthase; cd00554"
                     /db_xref="CDD:100025"
     misc_feature    order(77641..77646,77650..77652,77656..77658,77662..77670,
                     77680..77682,77785..77787,77791..77796,77800..77805,
                     77914..77916,77920..77922,77926..77928,77947..77949,
                     77953..77955,78019..78021,78025..78030,78037..78045,
                     78082..78084,78088..78090,78094..78096)
                     /locus_tag="CDBI1_00255"
                     /note="homotrimer interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:100025"
     misc_feature    order(77659..77661,77665..77667,77761..77763)
                     /locus_tag="CDBI1_00255"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:100025"
     misc_feature    order(77803..77805,77809..77811,77935..77940,77944..77955,
                     78028..78036)
                     /locus_tag="CDBI1_00255"
                     /note="CDP-binding sites; other site"
                     /db_xref="CDD:100025"
     gene            78490..80205
                     /locus_tag="CDBI1_00260"
                     /db_xref="GeneID:12215613"
     CDS             78490..80205
                     /locus_tag="CDBI1_00260"
                     /EC_number="6.1.1.15"
                     /note="COG0442 Prolyl-tRNA synthetase"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl-tRNA synthetase"
                     /protein_id="YP_006197221.1"
                     /db_xref="GI:384359369"
                     /db_xref="GeneID:12215613"
                     /translation="MKMSKMFMPTLKEIPADAEITSHQLMVRSGMIKKMTSGVYNQLP
                     MGLRVFKKIEQIIREELNKKDCQEILCAALLPSELWKESGRWTAMGEEMFRLKDRTER
                     EYCLGPTHEEAFTDIIRQEITSYKQLPLNLYQIQVKYRDERRPRFGVMRTKTFTMKDA
                     YSFDVDDKGLDKSYQDMFDAYVSIFDRCGLENSPVQADSGAIGGSTSAEFMVKSEVGE
                     DEVVFCSGCDYAANVERAESCNLASQKEEMKELEEVHTPGAATIKELEEFLKTSPDKF
                     AKTLVYEADGKTVVVVVRGDREVNEIKVSNAIGSVIEFALATDDVVRKVTNAEVGFAG
                     PIGINADYVFIDKEIVEQRNIVVGANKTEYHIKNANYGRDFEGIVGDFRNVQEGDQCI
                     VCGKPLEIARGVEVGHIFKLGTKYSESMNANFIDKDGKSKPIVMGCYGIGVERTAAAI
                     IEQHNDEKGIIWPLSVAPYHVVIVPANMKNEEQISIAENIYNDLQAMGVEVLLDDRDE
                     RIGVKFNDSELIGIPMRITVGKNINEGKVEFKLRHKEDKEIIDIEEINEKVKAEFIRN
                     NVRLG"
     misc_feature    78490..80118
                     /locus_tag="CDBI1_00260"
                     /note="prolyl-tRNA synthetase; Provisional; Region:
                     PRK09194"
                     /db_xref="CDD:236405"
     misc_feature    78538..>79137
                     /locus_tag="CDBI1_00260"
                     /note="Prolyl-tRNA synthetase (ProRS) class II core
                     catalytic domain. ProRS is a homodimer. It is responsible
                     for the attachment of proline to the 3' OH group of ribose
                     of the appropriate tRNA. This domain is primarily
                     responsible for ATP-dependent...; Region: ProRS_core_prok;
                     cd00779"
                     /db_xref="CDD:238402"
     misc_feature    order(78586..78591,78610..78621,78640..78642,78691..78699,
                     78703..78708,78766..78768,78772..78786,78838..78840,
                     78898..78900,78949..78951)
                     /locus_tag="CDBI1_00260"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238402"
     misc_feature    78685..78708
                     /locus_tag="CDBI1_00260"
                     /note="motif 1; other site"
                     /db_xref="CDD:238402"
     misc_feature    order(78814..78816,78820..78822,78907..78909,78913..78915,
                     78937..78945,78952..78954,78958..78960,78964..78966)
                     /locus_tag="CDBI1_00260"
                     /note="active site"
                     /db_xref="CDD:238402"
     misc_feature    78904..78915
                     /locus_tag="CDBI1_00260"
                     /note="motif 2; other site"
                     /db_xref="CDD:238402"
     misc_feature    79165..79635
                     /locus_tag="CDBI1_00260"
                     /note="INS is an amino acid-editing domain inserted (INS)
                     into the bacterial class II prolyl-tRNA synthetase (ProRS)
                     however, this CD is not exclusively bacterial. It is also
                     found at the N-terminus of the eukaryotic/archaea-like
                     ProRS's of yeasts and...; Region: ProRS-INS; cd04334"
                     /db_xref="CDD:239826"
     misc_feature    order(79321..79323,79480..79485,79561..79563)
                     /locus_tag="CDBI1_00260"
                     /note="putative deacylase active site [active]"
                     /db_xref="CDD:239826"
     misc_feature    <79678..79848
                     /locus_tag="CDBI1_00260"
                     /note="Class II tRNA amino-acyl synthetase-like catalytic
                     core domain. Class II amino acyl-tRNA synthetases (aaRS)
                     share a common fold and generally attach an amino acid to
                     the 3' OH of ribose of the appropriate tRNA.   PheRS is an
                     exception in that it...; Region: class_II_aaRS-like_core;
                     cl00268"
                     /db_xref="CDD:241739"
     misc_feature    order(79696..79701,79711..79713,79801..79806,79810..79815,
                     79822..79824)
                     /locus_tag="CDBI1_00260"
                     /note="active site"
                     /db_xref="CDD:238391"
     misc_feature    order(79813..79815,79822..79824)
                     /locus_tag="CDBI1_00260"
                     /note="motif 3; other site"
                     /db_xref="CDD:238391"
     misc_feature    79891..80118
                     /locus_tag="CDBI1_00260"
                     /note="ProRS Prolyl-anticodon binding domain, short
                     version found predominantly in bacteria. ProRS belongs to
                     class II aminoacyl-tRNA synthetases (aaRS). This alignment
                     contains the anticodon binding domain, which is
                     responsible for specificity in tRNA-binding; Region:
                     ProRS_anticodon_short; cd00861"
                     /db_xref="CDD:238438"
     misc_feature    order(79915..79920,80032..80034,80050..80052,80074..80076,
                     80101..80103,80107..80109)
                     /locus_tag="CDBI1_00260"
                     /note="anticodon binding site; other site"
                     /db_xref="CDD:238438"
     gene            80327..81772
                     /locus_tag="CDBI1_00265"
                     /db_xref="GeneID:12215614"
     CDS             80327..81772
                     /locus_tag="CDBI1_00265"
                     /EC_number="6.1.1.15"
                     /note="COG0442 Prolyl-tRNA synthetase"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl-tRNA synthetase"
                     /protein_id="YP_006197222.1"
                     /db_xref="GI:384359370"
                     /db_xref="GeneID:12215614"
                     /translation="MAKNEKQFVEEITKMEDDFPQWYTDVITKTDLVDYAPVKGFMVV
                     KPYGYALWEKMQEFMDKKFKETGHKNCYFPLLIPESLLNKEAEHVEGFAPEVAWVTHG
                     GNKKLEERLCVRPTSETIICTMYAKWLKSYRELPYLYNQWCSVVRWEKSTRPFLRTSE
                     FLWQEGHTLHETAEEAQEETIQQLEVYKALCEELLAMPVVAGQKSESEKFAGGERTYT
                     IEAMMHDGKALQSGTSHFLGQHFTKAFDITFADREGNLANPYHTSWGASTRLIGGLIM
                     THSDNRGLVLPPRVAPIQVVIVPIAAKKGNVMETVDKIYADLKTKGVAVEVDDRDNYT
                     TGWKFNEWEMKGAPVRVEIGPKDIENNQAMVFRRDTLEKDSMPLEGLADAICDLFDVI
                     HNDMFEKARKHREDNTSIVENMDEFRKALEEKPGFIKTMWCGDAECEAKIKEETGATI
                     RCLPFEQENLGHKCVYCGKEADSMVVMAKAY"
     misc_feature    80342..81769
                     /locus_tag="CDBI1_00265"
                     /note="prolyl-tRNA synthetase; Provisional; Region:
                     PRK08661"
                     /db_xref="CDD:236327"
     misc_feature    80378..81157
                     /locus_tag="CDBI1_00265"
                     /note="Prolyl-tRNA synthetase (ProRS) class II core
                     catalytic domain. ProRS is a homodimer. It is responsible
                     for the attachment of proline to the 3' OH group of ribose
                     of the appropriate tRNA. This domain is primarily
                     responsible for ATP-dependent...; Region:
                     ProRS_core_arch_euk; cd00778"
                     /db_xref="CDD:238401"
     misc_feature    order(80426..80431,80453..80464,80483..80485,80534..80542,
                     80546..80551,80612..80614,80618..80632,80696..80698,
                     80756..80758,80804..80806)
                     /locus_tag="CDBI1_00265"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238401"
     misc_feature    80528..80551
                     /locus_tag="CDBI1_00265"
                     /note="motif 1; other site"
                     /db_xref="CDD:238401"
     misc_feature    order(80672..80674,80678..80680,80765..80767,80771..80773,
                     80792..80800,80807..80809,80813..80815,80819..80821,
                     81014..81016,81020..81025,81029..81031,81113..81121,
                     81125..81127,81131..81133)
                     /locus_tag="CDBI1_00265"
                     /note="active site"
                     /db_xref="CDD:238401"
     misc_feature    80762..80773
                     /locus_tag="CDBI1_00265"
                     /note="motif 2; other site"
                     /db_xref="CDD:238401"
     misc_feature    81119..81133
                     /locus_tag="CDBI1_00265"
                     /note="motif 3; other site"
                     /db_xref="CDD:238401"
     misc_feature    81173..81769
                     /locus_tag="CDBI1_00265"
                     /note="ProRS Prolyl-anticodon binding domain, long version
                     found predominantly in eukaryotes and archaea. ProRS
                     belongs to class II aminoacyl-tRNA synthetases (aaRS).
                     This alignment contains the anticodon binding domain,
                     which is responsible for specificity in...; Region:
                     ProRS_anticodon_zinc; cd00862"
                     /db_xref="CDD:238439"
     misc_feature    order(81224..81229,81344..81346,81362..81364,81386..81388,
                     81416..81418,81422..81424)
                     /locus_tag="CDBI1_00265"
                     /note="anticodon binding site; other site"
                     /db_xref="CDD:238439"
     misc_feature    order(81623..81625,81638..81640,81716..81718,81725..81727)
                     /locus_tag="CDBI1_00265"
                     /note="zinc-binding site [ion binding]; other site"
                     /db_xref="CDD:238439"
     gene            82212..83693
                     /gene="gltX"
                     /locus_tag="CDBI1_00270"
                     /db_xref="GeneID:12215615"
     CDS             82212..83693
                     /gene="gltX"
                     /locus_tag="CDBI1_00270"
                     /EC_number="6.1.1.17"
                     /note="COG0008 Glutamyl- and glutaminyl-tRNA synthetases"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA synthetase"
                     /protein_id="YP_006197223.1"
                     /db_xref="GI:384359371"
                     /db_xref="GeneID:12215615"
                     /translation="MNVRVRFAPSPTGFVHIGSLRTALYNYLFAKKMGGEYILRVEDT
                     DQSRLVEGAIENMLNAMKWAGVNHSEGVILDDSGKVVQKGEYGPYIQSQRLDIYQEYI
                     KQLLDSGKAYYCFCTKERLDEVRDAQRAAGETAKYDGHCKNLSKEEVEANIKAGIPYV
                     IRLRLPENHTIKFTDLVRGDMEFNTNDLDDQVLMKTDGFPTYHFAVVVDDYLMKITHV
                     IRGEEWVSSTPKHVYLYEAFGWEAPVFVHLPNILNKEKKKLSKRQGDVAVEDFKKKGY
                     LPEGLVNYVALVGWSPEDNQELFTMEELEKAFSVERVSKSGGVFDTEKLNWVNQHYIK
                     DGDDAYLTDLAIPFLVEDGFITEEEATNKYDFLKSMISVLKEKLQYVKEITEHASIFF
                     GDKIEVETEEGREFLRLEHIPTLIDALREKIEKTEVLNAEFVQAMLKEIQKEYKIKGK
                     NLFMGSRIILTGQMHGPDLPKVMEVLGKETCLNRIAYVKNNIL"
     misc_feature    82212..83675
                     /gene="gltX"
                     /locus_tag="CDBI1_00270"
                     /note="glutamyl-tRNA synthetase; Reviewed; Region: gltX;
                     PRK01406"
                     /db_xref="CDD:234953"
     misc_feature    82215..>82559
                     /gene="gltX"
                     /locus_tag="CDBI1_00270"
                     /note="catalytic core domain of discriminating
                     glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
                     /db_xref="CDD:173905"
     misc_feature    order(82227..82229,82233..82241,82263..82268,82272..82277,
                     82335..82337,82548..82550)
                     /gene="gltX"
                     /locus_tag="CDBI1_00270"
                     /note="active site"
                     /db_xref="CDD:173905"
     misc_feature    82257..82268
                     /gene="gltX"
                     /locus_tag="CDBI1_00270"
                     /note="HIGH motif; other site"
                     /db_xref="CDD:173905"
     misc_feature    <82779..83213
                     /gene="gltX"
                     /locus_tag="CDBI1_00270"
                     /note="catalytic core domain of discriminating
                     glutamyl-tRNA synthetase; Region: GluRS_core; cd00808"
                     /db_xref="CDD:173905"
     misc_feature    order(82815..82817,82827..82829,82869..82874,82878..82883,
                     82956..82961,82983..82988)
                     /gene="gltX"
                     /locus_tag="CDBI1_00270"
                     /note="active site"
                     /db_xref="CDD:173905"
     misc_feature    82983..82997
                     /gene="gltX"
                     /locus_tag="CDBI1_00270"
                     /note="KMSKS motif; other site"
                     /db_xref="CDD:173905"
     gene            84214..85611
                     /gene="cysS"
                     /locus_tag="CDBI1_00275"
                     /db_xref="GeneID:12215616"
     CDS             84214..85611
                     /gene="cysS"
                     /locus_tag="CDBI1_00275"
                     /EC_number="6.1.1.16"
                     /note="COG0215 Cysteinyl-tRNA synthetase"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteinyl-tRNA synthetase"
                     /protein_id="YP_006197224.1"
                     /db_xref="GI:384359372"
                     /db_xref="GeneID:12215616"
                     /translation="MKVYNTLTRTKEEFVPLEEGKVKMYVCGPTVYNYIHIGNARPFI
                     IFDTLRRYLEYRGYDVTYVQNFTDVDDKIINRSHEEGISPEEVAAKYIKEYFVDCDGL
                     GIKRATVHPQVTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQED
                     LEAGARIEVNDQKRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGET
                     IDIHAGGQDLTFPHHENEIAQSEARSGKIFSKYWMHNGYININDEKMSKSKGNFFTVR
                     DISKLYDLEIVRFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVES
                     PLTEKEVELVKELDDFRQKFIDAMDDDVNTADAVSVIFELAKLINSNVDENSSLEFAK
                     KCLDEFNELTGVLNIVNKKKDTVLDKDIEELIQKRTDAKKNKEFQLADDIRQQLLDMG
                     IVLEDTRQGVKWKRI"
     misc_feature    84214..85608
                     /gene="cysS"
                     /locus_tag="CDBI1_00275"
                     /note="cysteinyl-tRNA synthetase; Validated; Region: cysS;
                     PRK00260"
                     /db_xref="CDD:234705"
     misc_feature    84217..>84552
                     /gene="cysS"
                     /locus_tag="CDBI1_00275"
                     /note="catalytic core domain of cysteinyl tRNA synthetase;
                     Region: CysRS_core; cd00672"
                     /db_xref="CDD:173899"
     misc_feature    order(84292..84303,84319..84321,84325..84330,84337..84342,
                     84406..84408,84412..84414)
                     /gene="cysS"
                     /locus_tag="CDBI1_00275"
                     /note="active site"
                     /db_xref="CDD:173899"
     misc_feature    84319..84330
                     /gene="cysS"
                     /locus_tag="CDBI1_00275"
                     /note="HIGH motif; other site"
                     /db_xref="CDD:173899"
     misc_feature    <84820..85122
                     /gene="cysS"
                     /locus_tag="CDBI1_00275"
                     /note="catalytic core domain of cysteinyl tRNA synthetase;
                     Region: CysRS_core; cd00672"
                     /db_xref="CDD:173899"
     misc_feature    85003..85017
                     /gene="cysS"
                     /locus_tag="CDBI1_00275"
                     /note="KMSKS motif; other site"
                     /db_xref="CDD:173899"
     misc_feature    85123..85605
                     /gene="cysS"
                     /locus_tag="CDBI1_00275"
                     /note="Anticodon-binding domain of cysteinyl tRNA
                     synthetases; Region: Anticodon_Ia_Cys; cd07963"
                     /db_xref="CDD:153417"
     misc_feature    order(85129..85131,85138..85140,85150..85152,85159..85161,
                     85168..85170,85177..85179,85300..85302,85306..85311,
                     85318..85320,85327..85332,85339..85341,85348..85350,
                     85492..85494,85504..85506,85519..85521,85531..85533,
                     85540..85542,85567..85578,85600..85602)
                     /gene="cysS"
                     /locus_tag="CDBI1_00275"
                     /note="tRNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:153417"
     misc_feature    order(85492..85494,85504..85506,85519..85521,85531..85533,
                     85540..85542,85570..85578)
                     /gene="cysS"
                     /locus_tag="CDBI1_00275"
                     /note="anticodon binding site; other site"
                     /db_xref="CDD:153417"
     gene            85596..86009
                     /locus_tag="CDBI1_00280"
                     /db_xref="GeneID:12215617"
     CDS             85596..86009
                     /locus_tag="CDBI1_00280"
                     /note="COG1939 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197225.1"
                     /db_xref="GI:384359373"
                     /db_xref="GeneID:12215617"
                     /translation="MEKDIKMEKTELVTMSPLVLAYLGDTVYETYIREYLIRQNTQRK
                     VNDLHKLAIKYVKAKAQATIIHEIEIELTEEESKIYKRGRNQKSNTSPKNADIIDYKH
                     ATGFEALVGYLYLNNEIERLQYIINKGIKIIERDM"
     misc_feature    85653..86006
                     /locus_tag="CDBI1_00280"
                     /note="RIBOc. Ribonuclease III C terminal domain. This
                     group consists of eukaryotic, bacterial and archeal
                     ribonuclease III (RNAse III) proteins. RNAse III is a
                     double stranded RNA-specific endonuclease. Prokaryotic
                     RNAse III is important in...; Region: RIBOc; cd00593"
                     /db_xref="CDD:238333"
     misc_feature    order(85656..85658,85668..85670,85905..85907,85914..85916)
                     /locus_tag="CDBI1_00280"
                     /note="active site"
                     /db_xref="CDD:238333"
     misc_feature    order(85656..85658,85905..85907,85914..85916)
                     /locus_tag="CDBI1_00280"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:238333"
     misc_feature    order(85659..85664,85671..85673,85680..85685,85692..85697,
                     85701..85709,85737..85739,85935..85937,85962..85964)
                     /locus_tag="CDBI1_00280"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238333"
     gene            86116..86226
                     /gene="thyX"
                     /locus_tag="CDBI1_00285"
                     /db_xref="GeneID:12215618"
     CDS             86116..86226
                     /gene="thyX"
                     /locus_tag="CDBI1_00285"
                     /EC_number="2.1.1.148"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="YP_006197226.1"
                     /db_xref="GI:384359374"
                     /db_xref="GeneID:12215618"
                     /translation="MKVKLISHTPEPEKVIAMAAKLCYSPVGTDEIEKDF"
     misc_feature    86116..>86220
                     /gene="thyX"
                     /locus_tag="CDBI1_00285"
                     /note="Thymidylate synthase complementing protein; Region:
                     Thy1; cl03630"
                     /db_xref="CDD:243477"
     gene            86517..87347
                     /locus_tag="CDBI1_00290"
                     /db_xref="GeneID:12215619"
     CDS             86517..87347
                     /locus_tag="CDBI1_00290"
                     /note="COG0207 Thymidylate synthase"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="YP_006197227.1"
                     /db_xref="GI:384359375"
                     /db_xref="GeneID:12215619"
                     /translation="MSLADKIFIDMCNNILENGVSSDGEVVRAKWDDGQPAHTIKKFC
                     VVNRYDLSKEFPILTLRPTNLKAAIDELLWIWQKKSNNINDLNSRIWDSWADETGSIG
                     KAYGYQIGQKHKYKEGEFDQIDRVIYDLKYNPYSRRIITNIYNHNDLNEMNLYPCAYS
                     MTFNVTGNRLNAILNQRSNDILVANNWNVTQYAILVHMLAQISDLEVGELVHVIADAH
                     IYDRHIPLVKELINRESYDAPKLIINPNIKNFYDFRVEDFTLENYKSGPQIKKIPVAI
                     "
     misc_feature    86529..87344
                     /locus_tag="CDBI1_00290"
                     /note="Thymidylate synthase; Region: Thymidylat_synt;
                     pfam00303"
                     /db_xref="CDD:215846"
     misc_feature    86535..87200
                     /locus_tag="CDBI1_00290"
                     /note="Thymidylate synthase and pyrimidine
                     hydroxymethylase: Thymidylate synthase (TS) and
                     deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs
                     that catalyze analogous alkylation of C5 of pyrimidine
                     nucleotides. Both enzymes are involved in the...; Region:
                     TS_Pyrimidine_HMase; cd00351"
                     /db_xref="CDD:238211"
     misc_feature    order(86574..86576,86613..86615,86637..86639,86643..86645,
                     86925..86930,86949..86954,86994..86996,87000..87002,
                     87012..87014,87039..87041,87045..87050,87159..87164)
                     /locus_tag="CDBI1_00290"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238211"
     misc_feature    order(86616..86618,86727..86729,86787..86789,86796..86798,
                     86829..86831,86985..86990,87042..87050,87054..87056,
                     87075..87080,87168..87170,87174..87176)
                     /locus_tag="CDBI1_00290"
                     /note="active site"
                     /db_xref="CDD:238211"
     gene            87360..87854
                     /locus_tag="CDBI1_00295"
                     /db_xref="GeneID:12215620"
     CDS             87360..87854
                     /locus_tag="CDBI1_00295"
                     /note="COG0262 Dihydrofolate reductase"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase region"
                     /protein_id="YP_006197228.1"
                     /db_xref="GI:384359376"
                     /db_xref="GeneID:12215620"
                     /translation="MKVIVAVDLNWGIGYGGKLLQSIPEDMKFFKEKTVGNVVVMGRE
                     TFKSLPGKKALKDRVNIVLTRSKSFNDDRLIVCNSIDETLKELQKYENDKIFIIGGET
                     VYKQFLPYCNELYVTKIQKTYEADRFFPNIDIMSNWDLIKESEVKEYNNIRYVFSTYI
                     NNSL"
     misc_feature    87369..87845
                     /locus_tag="CDBI1_00295"
                     /note="Dihydrofolate reductase [Coenzyme metabolism];
                     Region: FolA; COG0262"
                     /db_xref="CDD:223340"
     misc_feature    87369..87839
                     /locus_tag="CDBI1_00295"
                     /note="Dihydrofolate reductase (DHFR). Reduces
                     7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
                     as a cofactor. This is an essential step in the
                     biosynthesis of deoxythymidine phosphate since
                     5,6,7,8-tetrahydrofolate is required to regenerate 5;
                     Region: DHFR; cd00209"
                     /db_xref="CDD:238127"
     misc_feature    order(87369..87371,87420..87422,87435..87437,87531..87533,
                     87651..87653,87669..87671,87708..87710)
                     /locus_tag="CDBI1_00295"
                     /note="folate binding site [chemical binding]; other site"
                     /db_xref="CDD:238127"
     misc_feature    order(87375..87377,87396..87398,87486..87494,87552..87554,
                     87654..87665)
                     /locus_tag="CDBI1_00295"
                     /note="NADP+ binding site [chemical binding]; other site"
                     /db_xref="CDD:238127"
     gene            87881..89257
                     /locus_tag="CDBI1_00300"
                     /db_xref="GeneID:12215621"
     CDS             87881..89257
                     /locus_tag="CDBI1_00300"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197229.1"
                     /db_xref="GI:384359377"
                     /db_xref="GeneID:12215621"
                     /translation="MKKDIFVNRVSNALENDRGAVFVGSGISFSSTEVDWFKLLEPLV
                     NELDITLDNKSDDLPMIAQYIVNNYSGNRGPLVNEISKTFNRKFKLNKYHKYLATTKL
                     STIWTTNYDMLLEDAFYDFDTSVKVSDDSITRNRLEYDVEIIKMHGCISRSDWNEIVI
                     TQEDYDDFSINKPAISQRLSEDLINKSFLFIGYSYRDPNIRNIMINARRLSKKHTQQH
                     YIILKKLKDSDSNITQDDVVRQELWCNDLKRLGISTLFIDEYSELEELLREISQKSRG
                     KTVYVTGSHKESNMNARKLGTKLAKHKDITLLSGQSSGIGSEVVAAFTEECIKSKEDI
                     INRMKIFPNPYSADEKYSDDITLIPDLKKCRTKMLNSTQVVVVFSGGIGTEAEIDVAI
                     KQNCNIIPVITCKEDRENPAIKKILNYSDNMKNIEIKDATYYNKIVDEDGVVTMEEIY
                     ICISKIMN"
     misc_feature    88187..88567
                     /locus_tag="CDBI1_00300"
                     /note="SIR2-like domain; Region: SIR2_2; pfam13289"
                     /db_xref="CDD:222028"
     gene            89233..90333
                     /locus_tag="CDBI1_00305"
                     /db_xref="GeneID:12215622"
     CDS             89233..90333
                     /locus_tag="CDBI1_00305"
                     /note="COG0422 Thiamine biosynthesis protein ThiC"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein thic"
                     /protein_id="YP_006197230.1"
                     /db_xref="GI:384359378"
                     /db_xref="GeneID:12215622"
                     /translation="MHIKNNELKHDIIKLKKRNGFIEVGKDKKTLVNCLIGANELEDY
                     KYEIKKIDCILNISEKPDIVSDLSTKRRKISESIWYKIVKDTPFVSATLPIYLVSKNN
                     NKIDSNELLDIIIEQMENGVGMITIHPTANKQIFEDSKNRMVPVTSRGGGMVIQDLIS
                     KNFSEDNVYLKILPEIIKYAQKHNVCISLGATFRSGNIFDSNDRAQITEIKSQIELAK
                     RIYKSNVGVIIESPGHSRPSDIIKISSILKKEGFPIMPLGPIPTDIAIGMDHIAAAIG
                     ATIMGIEGCANIISTVTREEHTGGRPSIESTVESIRTAKIAAHIIDIHQMNDINLDMS
                     VSKSRAKSNTCIFGKDTRYCDRCRELCPLCIR"
     misc_feature    89302..90255
                     /locus_tag="CDBI1_00305"
                     /note="ThiC family; Region: ThiC; cl08031"
                     /db_xref="CDD:244842"
     gene            90499..90801
                     /locus_tag="CDBI1_00310"
                     /db_xref="GeneID:12215623"
     CDS             90499..90801
                     /locus_tag="CDBI1_00310"
                     /note="COG1351 Predicted alternative thymidylate synthase"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="YP_006197231.1"
                     /db_xref="GI:384359379"
                     /db_xref="GeneID:12215623"
                     /translation="MKKYQEDYDKLVEILFENHYNKLIKGGKNEKTSKRQVEKKAIED
                     ARYVFPNACETKMVFTINARSLFNFFEHRCYENGSCLEGTMTCGDIVQVRKKFKNL"
     misc_feature    <90502..90720
                     /locus_tag="CDBI1_00310"
                     /note="Thymidylate synthase complementing protein; Region:
                     Thy1; cl03630"
                     /db_xref="CDD:243477"
     gene            90814..91551
                     /locus_tag="CDBI1_00315"
                     /db_xref="GeneID:12215624"
     CDS             90814..91551
                     /locus_tag="CDBI1_00315"
                     /note="COG0566 rRNA methylases"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="YP_006197232.1"
                     /db_xref="GI:384359380"
                     /db_xref="GeneID:12215624"
                     /translation="MASIEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDK
                     NIIIQYVDKHKLDEVSTSHSHQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEI
                     TDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTI
                     KRLKEEGLWIAAADMDGETFYKQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIG
                     NVTSLNASVAGGILLYEIFRQRLDKSK"
     misc_feature    90823..91533
                     /locus_tag="CDBI1_00315"
                     /note="rRNA methylase, putative, group 3; Region:
                     rRNA_methyl_3; TIGR00186"
                     /db_xref="CDD:129290"
     misc_feature    90823..91041
                     /locus_tag="CDBI1_00315"
                     /note="RNA 2'-O ribose methyltransferase substrate
                     binding; Region: SpoU_sub_bind; pfam08032"
                     /db_xref="CDD:203842"
     misc_feature    91093..91515
                     /locus_tag="CDBI1_00315"
                     /note="SpoU rRNA Methylase family; Region: SpoU_methylase;
                     pfam00588"
                     /db_xref="CDD:216010"
     gene            91554..92081
                     /locus_tag="CDBI1_00320"
                     /db_xref="GeneID:12215625"
     CDS             91554..92081
                     /locus_tag="CDBI1_00320"
                     /note="COG3688 Predicted RNA-binding protein containing a
                     PIN domain"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197233.1"
                     /db_xref="GI:384359381"
                     /db_xref="GeneID:12215625"
                     /translation="MKKNINHYLIIDGYNIINAWDNLKELAKEDLEDSREKLIDDIIE
                     FSEFMGYKTIIVFDAYNVKNSREKVEKRKHITIVYTREHQTADSYIEKFITSLSKYDD
                     VKVATNDYAEQQMILGKGATRMSARELKLELDRSKNKMKEKNIGLRKKIQRNWLEERL
                     DKETLSKLENIRRKR"
     misc_feature    91578..92072
                     /locus_tag="CDBI1_00320"
                     /note="YacP-like NYN domain; Region: NYN_YacP; pfam05991"
                     /db_xref="CDD:218845"
     gene            92146..92793
                     /locus_tag="CDBI1_00325"
                     /db_xref="GeneID:12215626"
     CDS             92146..92793
                     /locus_tag="CDBI1_00325"
                     /EC_number="2.7.7.6"
                     /note="'COG1595 DNA-directed RNA polymerase specialized
                     sigma subunit, sigma24 homolog'"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-70"
                     /protein_id="YP_006197234.1"
                     /db_xref="GI:384359382"
                     /db_xref="GeneID:12215626"
                     /translation="MLVAKEKSYELVDNCQQDEYNIVLRASEGDKIALEYIITKYRNF
                     VKAKAKSYFLIGADKEDIIQEGMIGLYKAVRDFDGSKTNSFKCFAEICITRQIITAIK
                     TATRQKHIPLNSYVSLNKPIYDEESDRTLLDIIATSIVTDPEELIISKEELKNIESKM
                     NELLSDLELEVLELYLNGKSYQFIADKLKRDVKSIDNALQRVKRKLEKHLENRND"
     misc_feature    92209..92790
                     /locus_tag="CDBI1_00325"
                     /note="RNA polymerase factor sigma-70; Validated; Region:
                     PRK08295"
                     /db_xref="CDD:181361"
     misc_feature    92254..92466
                     /locus_tag="CDBI1_00325"
                     /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
                     /db_xref="CDD:218138"
     gene            92867..94060
                     /locus_tag="CDBI1_00330"
                     /db_xref="GeneID:12215627"
     CDS             92867..94060
                     /locus_tag="CDBI1_00330"
                     /note="COG0050 GTPases - translation elongation factors"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="YP_006197235.1"
                     /db_xref="GI:384359383"
                     /db_xref="GeneID:12215627"
                     /translation="MAKAKYERTKPHVNIGTIGHVDHGKTTLTAAITKTLYDRYQLGE
                     AVDFANIDKAPEERERGITISTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDG
                     AILVCSATDGPMPQTREHILLSRQVGVPYIVVFLNKCDMVDDEELLELVEMEVRDLLT
                     EYDFPGDDTPIVRGSALMALEDPKSEWGDKIVELFEQIDEYIPAPERDTDKPFLMPVE
                     DVFSITGRGTVATGRVERGVLKVQDEVELVGLTEAPRKVVVTGVEMFRKLLDQAQAGD
                     NIGALLRGVQRNEIERGQVLAKTGSVKAHTKFTAEVYVLKKEEGGRHTPFFDGYRPQF
                     YFRTTDVTGACKLPEGIEMVMPGDNVTMEVDLINSIVVEEGLRFSIREGGRTVASGVV
                     ATIIE"
     misc_feature    92867..94057
                     /locus_tag="CDBI1_00330"
                     /note="elongation factor Tu; Reviewed; Region: PRK00049"
                     /db_xref="CDD:234596"
     misc_feature    92897..93481
                     /locus_tag="CDBI1_00330"
                     /note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
                     Region: EF_Tu; cd01884"
                     /db_xref="CDD:206671"
     misc_feature    92921..92944
                     /locus_tag="CDBI1_00330"
                     /note="G1 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    order(92924..92926,92930..92932,92942..92947,92954..92956,
                     92963..92968,92978..92980,93065..93070,93122..93127,
                     93194..93199,93203..93214,93221..93223,93314..93316,
                     93326..93328,93404..93409)
                     /locus_tag="CDBI1_00330"
                     /note="GEF interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:206671"
     misc_feature    order(92930..92947,93008..93010,93275..93280,93284..93286,
                     93389..93397)
                     /locus_tag="CDBI1_00330"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206671"
     misc_feature    93035..93067
                     /locus_tag="CDBI1_00330"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206671"
     misc_feature    93053..93055
                     /locus_tag="CDBI1_00330"
                     /note="G2 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    93110..93121
                     /locus_tag="CDBI1_00330"
                     /note="G3 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    93116..93172
                     /locus_tag="CDBI1_00330"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206671"
     misc_feature    93275..93286
                     /locus_tag="CDBI1_00330"
                     /note="G4 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    93389..93397
                     /locus_tag="CDBI1_00330"
                     /note="G5 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    93503..93766
                     /locus_tag="CDBI1_00330"
                     /note="EFTU_II: Elongation factor Tu domain II. Elongation
                     factors Tu (EF-Tu) are three-domain GTPases with an
                     essential function in the elongation phase of mRNA
                     translation. The GTPase center of EF-Tu is in the
                     N-terminal domain (domain I), also known as the...;
                     Region: EFTU_II; cd03697"
                     /db_xref="CDD:239668"
     misc_feature    93773..94042
                     /locus_tag="CDBI1_00330"
                     /note="Domain III of elongation factor (EF) Tu. Ef-Tu
                     consists of three structural domains, designated I, II and
                     III. Domain III adopts a beta barrel structure. Domain III
                     is involved in binding to both charged tRNA and binding to
                     elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
                     /db_xref="CDD:239678"
     misc_feature    order(93809..93811,93815..93823,93875..93877,93995..94003,
                     94031..94033)
                     /locus_tag="CDBI1_00330"
                     /note="Antibiotic Binding Site [chemical binding]; other
                     site"
                     /db_xref="CDD:239678"
     gene            94310..94459
                     /gene="rpmG"
                     /locus_tag="CDBI1_00335"
                     /db_xref="GeneID:12215628"
     CDS             94310..94459
                     /gene="rpmG"
                     /locus_tag="CDBI1_00335"
                     /note="COG0267 Ribosomal protein L33"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="YP_006197236.1"
                     /db_xref="GI:384359384"
                     /db_xref="GeneID:12215628"
                     /translation="MRVKVTLACTECKQRNYNTTKNKKNNPDRIELQKYCRFCKKHTT
                     HKETK"
     misc_feature    94310..94456
                     /gene="rpmG"
                     /locus_tag="CDBI1_00335"
                     /note="50S ribosomal protein L33; Validated; Region: rpmG;
                     PRK00504"
                     /db_xref="CDD:234783"
     gene            94485..94706
                     /locus_tag="CDBI1_00340"
                     /db_xref="GeneID:12215629"
     CDS             94485..94706
                     /locus_tag="CDBI1_00340"
                     /note="COG0690 Preprotein translocase subunit SecE"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase SecE subunit"
                     /protein_id="YP_006197237.1"
                     /db_xref="GI:384359385"
                     /db_xref="GeneID:12215629"
                     /translation="MAAQKNDGAKTKKRFSLFGYLKETKQELKRVTWPTKKELFKNTS
                     IVLTVVISCTILVWGIDTILSGALALLLK"
     misc_feature    94530..94697
                     /locus_tag="CDBI1_00340"
                     /note="SecE/Sec61-gamma subunits of protein translocation
                     complex; Region: SecE; pfam00584"
                     /db_xref="CDD:201325"
     gene            94726..95268
                     /locus_tag="CDBI1_00345"
                     /db_xref="GeneID:12215630"
     CDS             94726..95268
                     /locus_tag="CDBI1_00345"
                     /note="COG0250 Transcription antiterminator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination protein"
                     /protein_id="YP_006197238.1"
                     /db_xref="GI:384359386"
                     /db_xref="GeneID:12215630"
                     /translation="MSELQEASWYVVHTYSGHENKVKATIEKAVKTRGMEDCIRQVVV
                     PTEEVVETTKTGKEKTRQRKVYPSYVLVKMIITDESWYVVRNTKGVTGFVGPGSKPVP
                     LSEDEVKAMGIDTTDPKVVNSDVDFEIGDTVKVSQGPFSGQIGNIEEIDLENREVKVC
                     INAFGKRTLFVIELEGIEKI"
     misc_feature    94729..95265
                     /locus_tag="CDBI1_00345"
                     /note="transcription antitermination protein NusG;
                     Validated; Region: nusG; PRK05609"
                     /db_xref="CDD:180161"
     misc_feature    94750..95058
                     /locus_tag="CDBI1_00345"
                     /note="Bacterial N-Utilization Substance G (NusG)
                     N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
                     cd09891"
                     /db_xref="CDD:193580"
     misc_feature    order(94756..94758,94858..94860,94921..94923,94930..94932,
                     94936..94938,95032..95034,95056..95058)
                     /locus_tag="CDBI1_00345"
                     /note="putative homodimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:193580"
     misc_feature    95095..95262
                     /locus_tag="CDBI1_00345"
                     /note="NusG contains an NGN domain at its N-terminus and
                     KOW motif at its C-terminus; Region: KOW_NusG; cd06091"
                     /db_xref="CDD:240515"
     misc_feature    order(95131..95145,95152..95154,95188..95190,95215..95223,
                     95227..95238,95248..95253)
                     /locus_tag="CDBI1_00345"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240515"
     misc_feature    95131..95142
                     /locus_tag="CDBI1_00345"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240515"
     gene            95304..95729
                     /gene="rplK"
                     /locus_tag="CDBI1_00350"
                     /db_xref="GeneID:12215631"
     CDS             95304..95729
                     /gene="rplK"
                     /locus_tag="CDBI1_00350"
                     /note="COG0080 Ribosomal protein L11"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="YP_006197239.1"
                     /db_xref="GI:384359387"
                     /db_xref="GeneID:12215631"
                     /translation="MAKKVIGQIKLQIPAGKATPAPPVGPALGQHGVNIMGFTKEFNA
                     KTADQAGMIIPVVITVYQDRSFSFITKTPPAAVLIKKALNLKSGSGEPNKKKVAKMTS
                     AQVREIAELKMPDLNAASVEAAMSMIAGTARSMGVVIED"
     misc_feature    95304..95726
                     /gene="rplK"
                     /locus_tag="CDBI1_00350"
                     /note="50S ribosomal protein L11; Validated; Region: rplK;
                     PRK00140"
                     /db_xref="CDD:234661"
     misc_feature    95328..95720
                     /gene="rplK"
                     /locus_tag="CDBI1_00350"
                     /note="Ribosomal protein L11. Ribosomal protein L11,
                     together with proteins L10 and L7/L12, and 23S rRNA, form
                     the L7/L12 stalk on the surface of the large subunit of
                     the ribosome. The homologous eukaryotic cytoplasmic
                     protein is also called 60S ribosomal...; Region:
                     Ribosomal_L11; cd00349"
                     /db_xref="CDD:100101"
     misc_feature    order(95331..95333,95391..95393,95523..95531,95541..95543,
                     95562..95564,95637..95639,95652..95660,95670..95672,
                     95679..95684,95691..95696,95700..95708)
                     /gene="rplK"
                     /locus_tag="CDBI1_00350"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:100101"
     misc_feature    order(95331..95333,95472..95474,95478..95489,95499..95501,
                     95505..95510,95640..95645,95652..95657)
                     /gene="rplK"
                     /locus_tag="CDBI1_00350"
                     /note="L7/L12 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100101"
     misc_feature    order(95379..95381,95391..95393)
                     /gene="rplK"
                     /locus_tag="CDBI1_00350"
                     /note="putative thiostrepton binding site; other site"
                     /db_xref="CDD:100101"
     misc_feature    order(95580..95582,95589..95591)
                     /gene="rplK"
                     /locus_tag="CDBI1_00350"
                     /note="L25 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100101"
     gene            95799..96497
                     /gene="rplA"
                     /locus_tag="CDBI1_00355"
                     /db_xref="GeneID:12215632"
     CDS             95799..96497
                     /gene="rplA"
                     /locus_tag="CDBI1_00355"
                     /note="COG0081 Ribosomal protein L1"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="YP_006197240.1"
                     /db_xref="GI:384359388"
                     /db_xref="GeneID:12215632"
                     /translation="MAKKGKRYAGALQKVDRTKFYDASEALTLVSDIAGAKFDETVEA
                     HIKLGVDSRHADQQVRGAVVLPHGTGKTKRVLVFAKGEKAKEAEQAGADFVGAEELVQ
                     KIQGENWFDFDIVVATPDMMGVVGRLGRVLGPKGLMPNPKSGTVTFDVAKAIDEIKAG
                     KVEYRLDKTNIIHVPVGKVSFGGEKLTENFTALMDAIIKAKPAAAKGQYLRSITVASS
                     MGPGVKINPARTAE"
     misc_feature    95871..96473
                     /gene="rplA"
                     /locus_tag="CDBI1_00355"
                     /note="Ribosomal protein L1.  The L1 protein, located near
                     the E-site of the ribosome, forms part of the L1 stalk
                     along with 23S rRNA.  In bacteria and archaea, L1
                     functions both as a ribosomal protein that binds rRNA, and
                     as a translation repressor that binds...; Region:
                     Ribosomal_L1; cd00403"
                     /db_xref="CDD:238235"
     misc_feature    order(95904..95912,95919..95921,95925..95927,95931..95933,
                     95937..95939,96303..96305,96309..96311,96315..96317,
                     96453..96458,96462..96464)
                     /gene="rplA"
                     /locus_tag="CDBI1_00355"
                     /note="mRNA/rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238235"
     gene            96720..97226
                     /gene="rplJ"
                     /locus_tag="CDBI1_00360"
                     /db_xref="GeneID:12215633"
     CDS             96720..97226
                     /gene="rplJ"
                     /locus_tag="CDBI1_00360"
                     /note="COG0244 Ribosomal protein L10"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="YP_006197241.1"
                     /db_xref="GI:384359389"
                     /db_xref="GeneID:12215633"
                     /translation="MRKAIEIKSEVVSEIVEKLQKSSAAVVVDYKGLTVEEVTELRKQ
                     MREAGVDYKVYKNTLVRRAAKEVGIEQFNDELLVGTNAIAFGYDDPVAPARILKGFMD
                     SHPKMKLKMGIVEGAFYDESKIVEMANIPSREVLIAKLLGSLKAPVSNFAYLIDAIAK
                     KAEGQEEA"
     misc_feature    96774..97202
                     /gene="rplJ"
                     /locus_tag="CDBI1_00360"
                     /note="Ribosomal protein L10 family, L10 subfamily;
                     composed of bacterial 50S ribosomal protein and eukaryotic
                     mitochondrial 39S ribosomal protein, L10. L10 occupies the
                     L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
                     of L10 interacts with L11 protein...; Region:
                     Ribosomal_L10; cd05797"
                     /db_xref="CDD:240223"
     misc_feature    order(96885..96896,96903..96905)
                     /gene="rplJ"
                     /locus_tag="CDBI1_00360"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:240223"
     misc_feature    order(96990..96992,97059..97061,97068..97070,97116..97118,
                     97125..97130,97137..97142,97146..97163,97167..97175,
                     97182..97187,97191..97196,97200..97202)
                     /gene="rplJ"
                     /locus_tag="CDBI1_00360"
                     /note="Interface with L7/L12 ribosomal proteins
                     [polypeptide binding]; other site"
                     /db_xref="CDD:240223"
     gene            97284..97649
                     /locus_tag="CDBI1_00365"
                     /db_xref="GeneID:12215634"
     CDS             97284..97649
                     /locus_tag="CDBI1_00365"
                     /note="COG0222 Ribosomal protein L7/L12"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="YP_006197242.1"
                     /db_xref="GI:384359390"
                     /db_xref="GeneID:12215634"
                     /translation="MTIEQILEAIENMKVLELNELVKAAEEKFGVSASAPVMVAGAAA
                     GGPAAEEKTEFDVVLTDVGSSKVGVIKAVREITGLGLKEAKEVVDNAPKTVKEGASKE
                     EADQIKEKLEAAGAKVEVK"
     misc_feature    97284..97643
                     /locus_tag="CDBI1_00365"
                     /note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
                     refers to the large ribosomal subunit proteins L7 and L12,
                     which are identical except that L7 is acetylated at the N
                     terminus. It is a component of the L7/L12 stalk, which is
                     located at the surface of...; Region: Ribosomal_L7_L12;
                     cd00387"
                     /db_xref="CDD:100102"
     misc_feature    order(97284..97286,97323..97331,97338..97343,97350..97352,
                     97359..97361,97404..97406,97413..97418,97422..97430,
                     97440..97445,97506..97508,97512..97517,97521..97523,
                     97527..97532,97572..97577,97581..97583,97590..97592)
                     /locus_tag="CDBI1_00365"
                     /note="core dimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:100102"
     misc_feature    order(97293..97295,97302..97304,97314..97316,97353..97355,
                     97368..97370)
                     /locus_tag="CDBI1_00365"
                     /note="peripheral dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:100102"
     misc_feature    order(97335..97337,97344..97349,97359..97361,97368..97370)
                     /locus_tag="CDBI1_00365"
                     /note="L10 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100102"
     misc_feature    order(97479..97484,97491..97496,97503..97505,97524..97529,
                     97536..97538)
                     /locus_tag="CDBI1_00365"
                     /note="L11 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100102"
     misc_feature    order(97482..97484,97494..97496,97503..97505,97524..97529,
                     97536..97538)
                     /locus_tag="CDBI1_00365"
                     /note="putative EF-Tu interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:100102"
     misc_feature    order(97482..97484,97491..97496,97503..97505)
                     /locus_tag="CDBI1_00365"
                     /note="putative EF-G interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:100102"
     gene            98041..98829
                     /locus_tag="CDBI1_00370"
                     /db_xref="GeneID:12215635"
     CDS             98041..98829
                     /locus_tag="CDBI1_00370"
                     /note="COG1028 Dehydrogenases with different specificities
                     (related to short-chain alcohol dehydrogenases)"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent 7-alpha-hydroxysteroid
                     dehydrogenase"
                     /protein_id="YP_006197243.1"
                     /db_xref="GI:384359391"
                     /db_xref="GeneID:12215635"
                     /translation="MEKLQGKIAVVTAATKGIGLASAEILAKNGATVYLAARSEELAN
                     EVINKISAEGGCAKFVYFNAREEETFTSMIEEVVKKEGKIDILVNNFGSTNPSLDKDL
                     VTGDTDNFFDTVNTNLKSVYLPCKAAIPHMIKNGKGSIVNISSIGSVLPDLSRIAYCV
                     SKAAINSLTQNIATQYAKDNVRCNAVLPGLIATKAALDNMSPEFIKEFLKHVPLNRIG
                     EPDDIAKAVLFYASDDSSFITGDLLEVAGGFGLPTPQFADNILG"
     misc_feature    98047..98793
                     /locus_tag="CDBI1_00370"
                     /note="3-ketoacyl-(acyl-carrier-protein) reductase;
                     Validated; Region: fabG; PRK05653"
                     /db_xref="CDD:235546"
     misc_feature    98065..98775
                     /locus_tag="CDBI1_00370"
                     /note="classical (c) SDRs; Region: SDR_c; cd05233"
                     /db_xref="CDD:212491"
     misc_feature    order(98077..98079,98083..98094,98149..98157,98224..98232,
                     98308..98316,98386..98388,98467..98475,98512..98514,
                     98524..98526,98602..98613,98617..98622)
                     /locus_tag="CDBI1_00370"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:212491"
     misc_feature    order(98389..98391,98473..98475,98512..98514,98524..98526)
                     /locus_tag="CDBI1_00370"
                     /note="active site"
                     /db_xref="CDD:212491"
     gene            99300..103016
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /db_xref="GeneID:12215636"
     CDS             99300..103016
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /EC_number="2.7.7.6"
                     /note="'COG0085 DNA-directed RNA polymerase, beta
                     subunit/140 kD subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="YP_006197244.1"
                     /db_xref="GI:384359392"
                     /db_xref="GeneID:12215636"
                     /translation="MPHPVTIGKRTRMSFSKIKEIADVPNLIEIQVDSYEWFLKEGLK
                     EVFDDISPIEDYTGNLILEFVDYSLDDKPKYDIEECKERDATYCAPLKVKVRLINKET
                     GEIKEQEVFMGDFPLMTERGTFVINGAERVIVSQLVRSPGVYYAEERDKTGKRLISST
                     VIPNRGAWLEYETDSNDVISVRVDRTRKQPVTVLLRALGIGTDAEIIDLLGEDERLSA
                     TLEKDNTKTVEEGLVEIYKKLRPGEPPTVESASSLLNALFFDPKRYDLAKVGRYKFNK
                     KLALCYRIMNKISAEDIINPETGEVFVKAGEKISYDLAKAIQNAGINVVNLLMDDDKK
                     VRVIGNNFVDIKSHIDFDIDDLNIKEKVHYPTLKEILDGYSDEEEIKEAIKSRIKELI
                     PKHILLDDIIASISYEFNIFYNIGNIDDIDHLGNRRIRSVGELLQNQVRIGLSRMERV
                     IKERMTVQDMEAITPQALVNIRPVSAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSA
                     LGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLGTYAKINEFGFIESP
                     YRKFDKETSTVTDEIHYLTADEEDLFVRAQANEPLTEDGKFVNHRVVCRTVNGAVEMV
                     PESRVDYMDISPKQVVSVATAMIPFLENDDANRALMGANMQRQAVPLVRREAPIIGTG
                     IEYRAAKDSGAVVVARNSGIAERVTADEIIIKREDGNRDRYNLLKFKRSNSGTCINQT
                     PIINKGDQIIKGDVIADGPATDLGEVALGRNCLIAFMTWEGYNYEDAILINERLVKED
                     RLSTIHIEEYECEARDTKLGPEEITRDIPNVGDSAIKNLDDRGIIRIGAEVDSGDILV
                     GKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTRENGDDL
                     SPGVNELVRCYIAKKRKIKVGDKMAGRHGNKGVISRVLPEEDMPFMENGTPLDIILNP
                     QGIPSRMNIGQVLEVHLGLAAKTLGWYVATSVFDGANEYDIMDALEEAGYPRDGKLTL
                     YDGRTGQSFDNRITVGYMYYLKLHHLVDEKLHARSTGPYSLVTQQPLGGKAQFGGQRF
                     GEMEVWALEAYGAAHILQEILTVKSDDVVGRVRTYEAIVKGENIPEPGIPESFKVLIK
                     ELQSLCLDVKVLTDEDQEIEVRESVDEDDTIGEFELDVVNHMGEVEESNIIEEIEDDF
                     VEATEDEDIENLEEFTEDDLFEEEIDFESDDFDM"
     misc_feature    99378..>99866
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="RNA polymerase beta subunit. RNA polymerases
                     catalyse the DNA dependent polymerization of RNA.
                     Prokaryotes contain a single RNA polymerase compared to
                     three in eukaryotes (not including mitochondrial. and
                     chloroplast polymerases). Each RNA polymerase...; Region:
                     RNA_pol_B_RPB2; cl17585"
                     /db_xref="CDD:248139"
     misc_feature    99714..>100139
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="RNA polymerase Rpb2, domain 2; Region:
                     RNA_pol_Rpb2_2; pfam04561"
                     /db_xref="CDD:218151"
     misc_feature    <100329..100589
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="RNA polymerase Rpb2, domain 2; Region:
                     RNA_pol_Rpb2_2; pfam04561"
                     /db_xref="CDD:218151"
     misc_feature    <100467..102791
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="DNA-directed RNA polymerase subunit beta; Reviewed;
                     Region: rpoB; PRK00405"
                     /db_xref="CDD:234749"
     misc_feature    <100488..>101021
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="RNA polymerase beta subunit. RNA polymerases
                     catalyse the DNA dependent polymerization of RNA.
                     Prokaryotes contain a single RNA polymerase compared to
                     three in eukaryotes (not including mitochondrial. and
                     chloroplast polymerases). Each RNA polymerase...; Region:
                     RNA_pol_B_RPB2; cl17585"
                     /db_xref="CDD:248139"
     misc_feature    100998..101204
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="RNA polymerase beta subunit external 1 domain;
                     Region: RNA_pol_Rpb2_45; pfam10385"
                     /db_xref="CDD:204469"
     misc_feature    <101148..102770
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="RNA polymerase beta subunit. RNA polymerases
                     catalyse the DNA dependent polymerization of RNA.
                     Prokaryotes contain a single RNA polymerase compared to
                     three in eukaryotes (not including mitochondrial. and
                     chloroplast polymerases). Each RNA polymerase...; Region:
                     RNA_pol_B_RPB2; cd00653"
                     /db_xref="CDD:238353"
     misc_feature    order(101196..101198,101250..101258,101262..101264,
                     101625..101636,101643..101645,101649..101657,
                     102132..102134,102138..102140,102144..102146,
                     102210..102212,102216..102218,102225..102227,
                     102234..102236,102249..102251,102261..102263,
                     102312..102314,102393..102395,102417..102425,
                     102429..102431,102468..102470,102477..102485,
                     102489..102494,102555..102563,102573..102575,
                     102579..102584,102588..102590,102594..102611,
                     102615..102632,102642..102644,102711..102713,
                     102723..102725,102729..102731,102735..102740,
                     102744..102746,102750..102761,102765..102767)
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="RPB1 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    order(101514..101519,101610..101612,101616..101618,
                     101679..101681,101688..101690,102159..102161,
                     102198..102200,102279..102284,102288..102290,
                     102381..102383,102432..102434)
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="RPB10 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    order(101643..101645,101685..101687,102156..102158,
                     102399..102401)
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="RPB11 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    order(101685..101690,101700..101702,102078..102080,
                     102084..102086,102159..102167,102174..102176,
                     102180..102185,102396..102419,102423..102425)
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="RPB3 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    order(101700..101702,101811..101813,101817..101819,
                     101829..101837,101841..101843)
                     /gene="rpoB"
                     /locus_tag="CDBI1_00375"
                     /note="RPB12 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     gene            103058..106543
                     /locus_tag="CDBI1_00380"
                     /db_xref="GeneID:12215637"
     CDS             103058..106543
                     /locus_tag="CDBI1_00380"
                     /EC_number="2.7.7.6"
                     /note="'COG0086 DNA-directed RNA polymerase, beta'
                     subunit/160 kD subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="YP_006197245.1"
                     /db_xref="GI:384359393"
                     /db_xref="GeneID:12215637"
                     /translation="MFELNNFESIKIALASPEKIRQWSRGEVKKPETINYRTLKPEKD
                     GLFCERIFGPQKDWECHCGKYRRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPMS
                     HIWYFKGIPSRMGLLLDMSPRSLEKILYFASYVVVDPGETGLNEKQLLTEKEYRTALE
                     KYGYTFTVGMGAEAVKTLLQNIDLEQQSKDLRAELKDSTGQKKVRTIRRLEVVEAFKK
                     SGNKPEWMILDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGA
                     PDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
                     RVDYSGRSVIVVGPELKFYQCGLPKKMALELFKPFVMDKLVKEGYAHNIKSAKSIVEK
                     VKPEVWDVLEDVIKSHPVLLNRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAYNADF
                     DGDQMAVHVPLSVEAQAEARFLMLSVNNILAPKDGSPITTPSQDMVLGCYYLTIEAQD
                     GAKGTGMVFKDFNELLLAYYNKSVHLHALVKLKVTLEDGRSSLVESTVGRFIFNENIP
                     QDLGFVDRKENPFALEVDFLADKKSLGKIIDKCFRKHGNTETAELLDYIKALGFKYST
                     LGGITVAVDDMSVPEEKKVFIAEAEAKVDKYEKAYRRGLISDEERYEKVIETWTETTD
                     KVTDALMGGLDRLNNIYIMAHSGARGSKNQIRQLAGMRGLMANASGKTVEIPVKSNFR
                     EGLSVLEYFTSSHGARKGLADTAIRTAESGYLTRRLVDVSQDVIVREIDCGTEDTTEI
                     YAIKEGNEVIEEIYDRIVGRYTIDPILNPETGEVLVEADSMIQEDEAETIVALGIEKI
                     RIRTVLNCKTNHGVCSKCYGRNLATGKEVNIGEAVGIIAAQSIGEPGTQLTMRTFHTG
                     GVAGADITQGLPRVEELFEARKPKGLAVITEVSGRVEIDETGKRKEVNVIPEEGETQT
                     YVIPYGSRLKVKQGQMLEAGDPLTQGFINPHDIVRVNGVKGVQEYIVKEVQRVYRLQG
                     VDVNDKHIEVIVRQMLSKVKVEDPGDTDLLPGGYEDVLTFNECNKDAIDKGLRPAVAK
                     RVLLGITKASLATDSFLSAASFQETTRVLTEAAIKGKEDHLIGLKENVILGKLIPAGT
                     GMKKYRNIAVEKIED"
     misc_feature    103058..106540
                     /locus_tag="CDBI1_00380"
                     /note="DNA-directed RNA polymerase subunit beta';
                     Provisional; Region: PRK00566"
                     /db_xref="CDD:234794"
     misc_feature    103067..104050
                     /locus_tag="CDBI1_00380"
                     /note="RNA polymerase Rpb1, domain 1; Region:
                     RNA_pol_Rpb1_1; pfam04997"
                     /db_xref="CDD:218370"
     misc_feature    103727..104557
                     /locus_tag="CDBI1_00380"
                     /note="RNA polymerase I subunit A N-terminus; Region:
                     RPOLA_N; smart00663"
                     /db_xref="CDD:214767"
     misc_feature    104489..104962
                     /locus_tag="CDBI1_00380"
                     /note="RNA polymerase Rpb1, domain 3; Region:
                     RNA_pol_Rpb1_3; pfam04983"
                     /db_xref="CDD:218361"
     misc_feature    105047..105277
                     /locus_tag="CDBI1_00380"
                     /note="RNA polymerase Rpb1, domain 4; Region:
                     RNA_pol_Rpb1_4; pfam05000"
                     /db_xref="CDD:218372"
     misc_feature    105704..>105868
                     /locus_tag="CDBI1_00380"
                     /note="Largest subunit (beta') of Bacterial DNA-dependent
                     RNA polymerase (RNAP), C-terminal domain; Region:
                     RNAP_beta'_C; cd02655"
                     /db_xref="CDD:132721"
     misc_feature    order(105704..105706,105713..105718,105722..105724)
                     /locus_tag="CDBI1_00380"
                     /note="Rpb1 (beta') - Rpb6 (omega) interaction site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:132721"
     misc_feature    105779..105805
                     /locus_tag="CDBI1_00380"
                     /note="G-loop; other site"
                     /db_xref="CDD:132721"
     misc_feature    105893..>106063
                     /locus_tag="CDBI1_00380"
                     /note="Apocytochrome F, C-terminal; Region:
                     Apocytochr_F_C; cl03168"
                     /db_xref="CDD:243328"
     misc_feature    106028..106501
                     /locus_tag="CDBI1_00380"
                     /note="Largest subunit (beta') of Bacterial DNA-dependent
                     RNA polymerase (RNAP), C-terminal domain; Region:
                     RNAP_beta'_C; cd02655"
                     /db_xref="CDD:132721"
     misc_feature    order(106343..106345,106388..106393)
                     /locus_tag="CDBI1_00380"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:132721"
     misc_feature    order(106433..106435,106451..106453,106469..106471,
                     106478..106483,106493..106495)
                     /locus_tag="CDBI1_00380"
                     /note="Rpb1 (beta') - Rpb2 (beta) interaction site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:132721"
     gene            106832..107254
                     /gene="rpsL"
                     /locus_tag="CDBI1_00385"
                     /db_xref="GeneID:12215638"
     CDS             106832..107254
                     /gene="rpsL"
                     /locus_tag="CDBI1_00385"
                     /note="COG0048 Ribosomal protein S12"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="YP_006197246.1"
                     /db_xref="GI:384359394"
                     /db_xref="GeneID:12215638"
                     /translation="MPTINQLVRKSRKALEKKSTAPALQKGYNSLNKKVTDASAPQKR
                     GVCTSVKTVTPKKPNSALRKVARVRLTNGIEVSAYIPGEGHNLQEHSVVLIRGGRVKD
                     LPGVRYHILRGTLDTAGVDKRRQSRSKYGAKRPKEAKK"
     misc_feature    106838..107200
                     /gene="rpsL"
                     /locus_tag="CDBI1_00385"
                     /note="S12-like family, 30S ribosomal protein S12
                     subfamily; S12 is located at the interface of the large
                     and small ribosomal subunits of prokaryotes, chloroplasts
                     and mitochondria, where it plays an important role in both
                     tRNA and ribosomal subunit...; Region: Ribosomal_S12;
                     cd03368"
                     /db_xref="CDD:239466"
     misc_feature    order(106841..106846,106850..106855,106862..106867)
                     /gene="rpsL"
                     /locus_tag="CDBI1_00385"
                     /note="S17 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:239466"
     misc_feature    106841..106843
                     /gene="rpsL"
                     /locus_tag="CDBI1_00385"
                     /note="S8 interaction site; other site"
                     /db_xref="CDD:239466"
     misc_feature    order(106865..106873,106907..106909,106952..106957,
                     106961..106963,107006..107011,107015..107023,
                     107042..107044,107066..107068,107075..107080,
                     107117..107122,107132..107137,107198..107200)
                     /gene="rpsL"
                     /locus_tag="CDBI1_00385"
                     /note="16S rRNA interaction site [nucleotide binding];
                     other site"
                     /db_xref="CDD:239466"
     misc_feature    order(106997..107002,107132..107134)
                     /gene="rpsL"
                     /locus_tag="CDBI1_00385"
                     /note="streptomycin interaction site [chemical binding];
                     other site"
                     /db_xref="CDD:239466"
     misc_feature    107000..107005
                     /gene="rpsL"
                     /locus_tag="CDBI1_00385"
                     /note="23S rRNA interaction site [nucleotide binding];
                     other site"
                     /db_xref="CDD:239466"
     misc_feature    order(107003..107020,107078..107104)
                     /gene="rpsL"
                     /locus_tag="CDBI1_00385"
                     /note="aminoacyl-tRNA interaction site (A-site)
                     [nucleotide binding]; other site"
                     /db_xref="CDD:239466"
     gene            107377..107847
                     /locus_tag="CDBI1_00390"
                     /db_xref="GeneID:12215639"
     CDS             107377..107847
                     /locus_tag="CDBI1_00390"
                     /note="COG0049 Ribosomal protein S7"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="YP_006197247.1"
                     /db_xref="GI:384359395"
                     /db_xref="GeneID:12215639"
                     /translation="MPRKGNIPKREVLPDPMYGSKVVTKLINNLMVDGKKGKSQRIVY
                     DAFAIVAEKTGEEALEVFNKAMDNIMPVLEVKARRVGGANYQVPIEVRPERRQTLGLR
                     WLVKYTRARGEKGMVEKLAKEIMDAANNTGASVKKKEDTHKMAEANKAFAHYRW"
     misc_feature    107377..107844
                     /locus_tag="CDBI1_00390"
                     /note="30S ribosomal protein S7; Validated; Region:
                     PRK05302"
                     /db_xref="CDD:235398"
     gene            107896..109962
                     /locus_tag="CDBI1_00395"
                     /db_xref="GeneID:12215640"
     CDS             107896..109962
                     /locus_tag="CDBI1_00395"
                     /note="COG0480 Translation elongation factors (GTPases)"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="YP_006197248.1"
                     /db_xref="GI:384359396"
                     /db_xref="GeneID:12215640"
                     /translation="MARKFPLEKTRNIGIMAHIDAGKTTTTERILFYTGQTHKIGETH
                     EGASQMDWMEQEKERGITITSAATTASWKDHRINIIDTPGHVDFTVEVERSLRVLDGS
                     VAVFCAKGGVEPQSENVWRQAETYGVPRIAFINKMDILGADFYNVISMMKSRLNSNAV
                     PMQLPIGKEDSFIGIIDLLKMDAVIYKDDLGVEMEETDIPEDMKELAAEWREKLVESV
                     AETDEELMMKYLEGEELTIDELKVAIRKATIACEMNPVFCGTAYRNKGVQLVIDAVLD
                     YLPAPTDIPAIKGILADGEEAERHSSDEEPFSALAFKIMTDPFVGKLAFFRVYSGTLE
                     SGSYVLNATKNKRERIGRILQMHANTREEITKVYAGDIAAAVGLKDTTTGDTLCDPAN
                     PIILESMEFPEPVISVAIEPSSKAAQEKMGIALQKLAEEDPTFTVKTDQETGQTIISG
                     MGELHLEIIVDRLLREFKVEAKVGAPQVAYRETITQPVDVEYKYSKQSGGRGQYGHVK
                     IRVAPQEPGEGYKFTNKTVGGSVPKEYVGPVDMGIQGAMQSGIVAGYPVVDVAVELYD
                     GSYHEVDSSEMAFKMAGSMAFKDAMKKGNAVLLEPYFKVEVVTPEDYMGDVMGDLNSR
                     RGLIQGMEARSGAQVINAFVPLSEMFGYSTDLRSSTQGRATYTMIFDHYEQVPASVAK
                     KIAEGK"
     misc_feature    107896..109959
                     /locus_tag="CDBI1_00395"
                     /note="elongation factor G; Reviewed; Region: PRK00007"
                     /db_xref="CDD:234569"
     misc_feature    107929..108738
                     /locus_tag="CDBI1_00395"
                     /note="Elongation factor G (EF-G) family involved in both
                     the elongation and ribosome recycling phases of protein
                     synthesis; Region: EF-G; cd01886"
                     /db_xref="CDD:206673"
     misc_feature    107944..107967
                     /locus_tag="CDBI1_00395"
                     /note="G1 box; other site"
                     /db_xref="CDD:206673"
     misc_feature    order(107947..107949,107953..107955,107965..107970,
                     107977..107979,107986..107991,108091..108096,
                     108148..108153,108220..108225,108331..108333,
                     108343..108345)
                     /locus_tag="CDBI1_00395"
                     /note="putative GEF interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206673"
     misc_feature    order(107953..107955,107959..107970,108298..108303,
                     108307..108309,108673..108681)
                     /locus_tag="CDBI1_00395"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206673"
     misc_feature    108034..108093
                     /locus_tag="CDBI1_00395"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206673"
     misc_feature    108079..108081
                     /locus_tag="CDBI1_00395"
                     /note="G2 box; other site"
                     /db_xref="CDD:206673"
     misc_feature    108136..108147
                     /locus_tag="CDBI1_00395"
                     /note="G3 box; other site"
                     /db_xref="CDD:206673"
     misc_feature    108142..108198
                     /locus_tag="CDBI1_00395"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206673"
     misc_feature    108298..108309
                     /locus_tag="CDBI1_00395"
                     /note="G4 box; other site"
                     /db_xref="CDD:206673"
     misc_feature    108673..108681
                     /locus_tag="CDBI1_00395"
                     /note="G5 box; other site"
                     /db_xref="CDD:206673"
     misc_feature    108814..109062
                     /locus_tag="CDBI1_00395"
                     /note="EFG_mtEFG_II: this subfamily represents the domain
                     II of elongation factor G (EF-G) in bacteria and, the
                     C-terminus of mitochondrial Elongation factor G1 (mtEFG1)
                     and G2 (mtEFG2)_like proteins found in eukaryotes. During
                     the process of peptide synthesis...; Region: EFG_mtEFG_II;
                     cd04088"
                     /db_xref="CDD:239755"
     misc_feature    109333..109680
                     /locus_tag="CDBI1_00395"
                     /note="EFG_mtEFG1_IV: domains similar to domain IV of the
                     bacterial translational elongation factor (EF) EF-G.
                     Included in this group is a domain of mitochondrial
                     Elongation factor G1 (mtEFG1) proteins homologous to
                     domain IV of EF-G. Eukaryotic cells harbor 2...; Region:
                     EFG_mtEFG1_IV; cd01434"
                     /db_xref="CDD:238715"
     misc_feature    109693..109926
                     /locus_tag="CDBI1_00395"
                     /note="EFG_mtEFG_C: domains similar to the C-terminal
                     domain of the bacterial translational elongation factor
                     (EF) EF-G.  Included in this group is the C-terminus of
                     mitochondrial Elongation factor G1 (mtEFG1) and G2
                     (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region:
                     EFG_mtEFG_C; cd03713"
                     /db_xref="CDD:239683"
     gene            110053..111246
                     /locus_tag="CDBI1_00400"
                     /db_xref="GeneID:12215641"
     CDS             110053..111246
                     /locus_tag="CDBI1_00400"
                     /note="COG0050 GTPases - translation elongation factors"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="YP_006197249.1"
                     /db_xref="GI:384359397"
                     /db_xref="GeneID:12215641"
                     /translation="MAKAKYERTKPHVNIGTIGHVDHGKTTLTAAITKTLYDRYQLGE
                     AVDFANIDKAPEERERGITISTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDG
                     AILVCSATDGPMPQTREHILLSRQVGVPYIVVFLNKCDMVDDEELLELVEMEVRDLLT
                     EYDFPGDDTPIVRGSALMALEDPKSEWGDKIVELFEQIDEYIPAPERDTDKPFLMPVE
                     DVFSITGRGTVATGRVERGVLKVQDEVELVGLTEAPRKVVVTGVEMFRKLLDQAQAGD
                     NIGALLRGVQRNEIERGQVLAKTGSVKAHTKFTAEVYVLKKEEGGRHTPFFDGYRPQF
                     YFRTTDVTGACKLPEGIEMVMPGDNVTMEVDLINSIVVEEGLRFSIREGGRTVASGVV
                     ATIIE"
     misc_feature    110053..111243
                     /locus_tag="CDBI1_00400"
                     /note="elongation factor Tu; Reviewed; Region: PRK00049"
                     /db_xref="CDD:234596"
     misc_feature    110083..110667
                     /locus_tag="CDBI1_00400"
                     /note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
                     Region: EF_Tu; cd01884"
                     /db_xref="CDD:206671"
     misc_feature    110107..110130
                     /locus_tag="CDBI1_00400"
                     /note="G1 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    order(110110..110112,110116..110118,110128..110133,
                     110140..110142,110149..110154,110164..110166,
                     110251..110256,110308..110313,110380..110385,
                     110389..110400,110407..110409,110500..110502,
                     110512..110514,110590..110595)
                     /locus_tag="CDBI1_00400"
                     /note="GEF interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:206671"
     misc_feature    order(110116..110133,110194..110196,110461..110466,
                     110470..110472,110575..110583)
                     /locus_tag="CDBI1_00400"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206671"
     misc_feature    110221..110253
                     /locus_tag="CDBI1_00400"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206671"
     misc_feature    110239..110241
                     /locus_tag="CDBI1_00400"
                     /note="G2 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    110296..110307
                     /locus_tag="CDBI1_00400"
                     /note="G3 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    110302..110358
                     /locus_tag="CDBI1_00400"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206671"
     misc_feature    110461..110472
                     /locus_tag="CDBI1_00400"
                     /note="G4 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    110575..110583
                     /locus_tag="CDBI1_00400"
                     /note="G5 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    110689..110952
                     /locus_tag="CDBI1_00400"
                     /note="EFTU_II: Elongation factor Tu domain II. Elongation
                     factors Tu (EF-Tu) are three-domain GTPases with an
                     essential function in the elongation phase of mRNA
                     translation. The GTPase center of EF-Tu is in the
                     N-terminal domain (domain I), also known as the...;
                     Region: EFTU_II; cd03697"
                     /db_xref="CDD:239668"
     misc_feature    110959..111228
                     /locus_tag="CDBI1_00400"
                     /note="Domain III of elongation factor (EF) Tu. Ef-Tu
                     consists of three structural domains, designated I, II and
                     III. Domain III adopts a beta barrel structure. Domain III
                     is involved in binding to both charged tRNA and binding to
                     elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
                     /db_xref="CDD:239678"
     misc_feature    order(110995..110997,111001..111009,111061..111063,
                     111181..111189,111217..111219)
                     /locus_tag="CDBI1_00400"
                     /note="Antibiotic Binding Site [chemical binding]; other
                     site"
                     /db_xref="CDD:239678"
     gene            111619..111930
                     /locus_tag="CDBI1_00405"
                     /db_xref="GeneID:12215642"
     CDS             111619..111930
                     /locus_tag="CDBI1_00405"
                     /note="COG0051 Ribosomal protein S10"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="YP_006197250.1"
                     /db_xref="GI:384359398"
                     /db_xref="GeneID:12215642"
                     /translation="MAKNEKIRIRLKSYDHKLLDFSAGKIVETAKKAGSQVSGPVPLP
                     TEKQVVTILRAVHKYKDSREQFEIRTHKRLIDIANPTPKTVDSLMRLDLPAGVDIEIK
                     L"
     misc_feature    111625..111927
                     /locus_tag="CDBI1_00405"
                     /note="30S ribosomal protein S10; Reviewed; Region: rpsJ;
                     PRK00596"
                     /db_xref="CDD:179076"
     gene            112022..112651
                     /gene="rplC"
                     /locus_tag="CDBI1_00410"
                     /db_xref="GeneID:12215643"
     CDS             112022..112651
                     /gene="rplC"
                     /locus_tag="CDBI1_00410"
                     /note="COG0087 Ribosomal protein L3"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="YP_006197251.1"
                     /db_xref="GI:384359399"
                     /db_xref="GeneID:12215643"
                     /translation="MKGILGKKVGMTQIFTDKGVVIPVTAVEAGPMVVTQIKTVDKDG
                     YNAIQIGFEDAKEKALNKPKKGHLAAANVLKKHLKEFRVDSVEGYTVGQEIKADVFEA
                     GAKIDVTGISKGKGFQGPIKRHGQSRGPETHGSRYHRRPGSMGACSYPGRVFKNKKLA
                     GHMGSVKVTVQNLEVVKVDADKNLILVKGAIPGAKGSVVTIKEAIKVSK"
     misc_feature    112022..112648
                     /gene="rplC"
                     /locus_tag="CDBI1_00410"
                     /note="50S ribosomal protein L3; Validated; Region: rplC;
                     PRK00001"
                     /db_xref="CDD:234564"
     gene            112681..113304
                     /gene="rplD"
                     /locus_tag="CDBI1_00415"
                     /db_xref="GeneID:12215644"
     CDS             112681..113304
                     /gene="rplD"
                     /locus_tag="CDBI1_00415"
                     /note="COG0088 Ribosomal protein L4"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="YP_006197252.1"
                     /db_xref="GI:384359400"
                     /db_xref="GeneID:12215644"
                     /translation="MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANK
                     RQGTQSAKTRAEVRGGGRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLP
                     KKVRRLAMKSALSSKVQNSEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKN
                     DNVIKSARNIEGVQTALVNTMNVYDILKYDSFIITTDAVKKVEEVYA"
     misc_feature    112684..113301
                     /gene="rplD"
                     /locus_tag="CDBI1_00415"
                     /note="50S ribosomal protein L4; Provisional; Region:
                     rplD; PRK05319"
                     /db_xref="CDD:235404"
     gene            113304..113594
                     /gene="rplW"
                     /locus_tag="CDBI1_00420"
                     /db_xref="GeneID:12215645"
     CDS             113304..113594
                     /gene="rplW"
                     /locus_tag="CDBI1_00420"
                     /note="COG0089 Ribosomal protein L23"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="YP_006197253.1"
                     /db_xref="GI:384359401"
                     /db_xref="GeneID:12215645"
                     /translation="MTNPHDVIIRPVVTEHSMAEMGEKKYTFVVAKDANKTEIKKAVE
                     KVFGVSVDKVNTLNYDGKVKRMGRTQGRTASFKKAVVKLTADSKEIEFFQGM"
     misc_feature    113316..113591
                     /gene="rplW"
                     /locus_tag="CDBI1_00420"
                     /note="50S ribosomal protein L23; Reviewed; Region: rplW;
                     PRK05738"
                     /db_xref="CDD:235586"
     gene            113624..114454
                     /gene="rplB"
                     /locus_tag="CDBI1_00425"
                     /db_xref="GeneID:12215646"
     CDS             113624..114454
                     /gene="rplB"
                     /locus_tag="CDBI1_00425"
                     /note="COG0090 Ribosomal protein L2"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="YP_006197254.1"
                     /db_xref="GI:384359402"
                     /db_xref="GeneID:12215646"
                     /translation="MAIKKFRPTSPALRQMTVLVSDEITCNQPEKSLLVNLKKNAGRN
                     VHGRITVRHRGGGQKRKYRIIDFKRDKDGIPAKVATIEYDPNRTANIALLNYADGEKR
                     YILAPVGINVGDTILSGLGADIKPGNCLALKDMPVGTIIHNIELKPGKGAQLVRSAGV
                     SAQLMAKEGKNALLRLPSGEMRLVSINCKATIGQVGNIEHGNVVIGKAGRKRHMGIRP
                     TVRGSVMNPNDHPHGGGEGRSPIGRPSPVTPWGKPALGYKTRKKNKASNKLIVSRRTK
                     "
     misc_feature    113624..114451
                     /gene="rplB"
                     /locus_tag="CDBI1_00425"
                     /note="50S ribosomal protein L2; Validated; Region: rplB;
                     PRK09374"
                     /db_xref="CDD:236488"
     misc_feature    113747..113977
                     /gene="rplB"
                     /locus_tag="CDBI1_00425"
                     /note="Ribosomal Proteins L2, RNA binding domain; Region:
                     Ribosomal_L2; pfam00181"
                     /db_xref="CDD:109247"
     misc_feature    113993..114382
                     /gene="rplB"
                     /locus_tag="CDBI1_00425"
                     /note="Ribosomal Proteins L2, C-terminal domain; Region:
                     Ribosomal_L2_C; pfam03947"
                     /db_xref="CDD:202823"
     gene            114489..114770
                     /gene="rpsS"
                     /locus_tag="CDBI1_00430"
                     /db_xref="GeneID:12215647"
     CDS             114489..114770
                     /gene="rpsS"
                     /locus_tag="CDBI1_00430"
                     /note="COG0185 Ribosomal protein S19"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="YP_006197255.1"
                     /db_xref="GI:384359403"
                     /db_xref="GeneID:12215647"
                     /translation="MSRSTKKGPFVHARLLKKIEAMNASGNKEVIKTWSRSSTVFPQM
                     VENTIAVHDGRKHVPVYITEDMVGHKLGEFVPTRTFKGHKDDEKSNKRK"
     misc_feature    114489..114764
                     /gene="rpsS"
                     /locus_tag="CDBI1_00430"
                     /note="30S ribosomal protein S19; Reviewed; Region: rpsS;
                     PRK00357"
                     /db_xref="CDD:178985"
     gene            114802..115137
                     /gene="rplV"
                     /locus_tag="CDBI1_00435"
                     /db_xref="GeneID:12215648"
     CDS             114802..115137
                     /gene="rplV"
                     /locus_tag="CDBI1_00435"
                     /note="COG0091 Ribosomal protein L22"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="YP_006197256.1"
                     /db_xref="GI:384359404"
                     /db_xref="GeneID:12215648"
                     /translation="MEAKATAKYVRVSPRKAGQICDLVRGKNVDEALAILKFTPRGAA
                     SIIAKVVKSAKANAENNHEMDTEKLYIASIVANQGPTMKRFMPRAMGRATTIRKRTSH
                     IEVVVKEKK"
     misc_feature    114808..115122
                     /gene="rplV"
                     /locus_tag="CDBI1_00435"
                     /note="Ribosomal protein L22/L17e.  L22 (L17 in
                     eukaryotes) is a core protein of the large ribosomal
                     subunit.  It is the only ribosomal protein that interacts
                     with all six domains of 23S rRNA, and is one of the
                     proteins important for directing the proper...; Region:
                     Ribosomal_L22; cd00336"
                     /db_xref="CDD:238205"
     misc_feature    order(114808..114813,114877..114885,114889..114894,
                     114898..114903,114964..114981,115006..115023,
                     115117..115122)
                     /gene="rplV"
                     /locus_tag="CDBI1_00435"
                     /note="putative translocon binding site; other site"
                     /db_xref="CDD:238205"
     misc_feature    order(114817..114819,114823..114825,114832..114834,
                     114838..114846,114853..114855,114865..114867,
                     114874..114876,114958..114960,114970..114972,
                     114979..114981,115018..115020,115024..115032,
                     115036..115038,115045..115047,115081..115098)
                     /gene="rplV"
                     /locus_tag="CDBI1_00435"
                     /note="protein-rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238205"
     gene            115160..115975
                     /gene="rpsC"
                     /locus_tag="CDBI1_00440"
                     /db_xref="GeneID:12215649"
     CDS             115160..115975
                     /gene="rpsC"
                     /locus_tag="CDBI1_00440"
                     /note="COG0092 Ribosomal protein S3"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="YP_006197257.1"
                     /db_xref="GI:384359405"
                     /db_xref="GeneID:12215649"
                     /translation="MGQKVNPHGLRVGVIKDWDSRWFATDKKEFGNLLLEDHNIRKFL
                     KKRLYSAGVAKIEIERSANKIKMDLHVAKPGVVIGRAGAGIEALKAELEKMTKKTIIV
                     NIVEVRSTDKNAQLVAENIALAIERRVAFRRAMKQAIQRAMKSGAKGIKVSASGRLGG
                     AEMARTEGYSEGNVPLQTLRADIDYGFAEADTTYGKIGIKVWICNGEVLPTRDGVNPR
                     EESRKSDRRDNKRDNRRNDRRGNDRRGNDNRGNYRGQRPQGGSRPQRTENKGN"
     misc_feature    115160..115828
                     /gene="rpsC"
                     /locus_tag="CDBI1_00440"
                     /note="30S ribosomal protein S3; Reviewed; Region: rpsC;
                     PRK00310"
                     /db_xref="CDD:234722"
     misc_feature    115163..115483
                     /gene="rpsC"
                     /locus_tag="CDBI1_00440"
                     /note="K homology RNA-binding (KH) domain of the
                     prokaryotic 30S small ribosomal subunit protein S3. S3  is
                     part of the head region of the 30S ribosomal subunit and
                     is believed to interact with mRNA as it threads its way
                     from the latch into the channel.  The KH...; Region:
                     30S_S3_KH; cd02412"
                     /db_xref="CDD:239095"
     misc_feature    115394..115405
                     /gene="rpsC"
                     /locus_tag="CDBI1_00440"
                     /note="G-X-X-G motif; other site"
                     /db_xref="CDD:239095"
     misc_feature    115517..115768
                     /gene="rpsC"
                     /locus_tag="CDBI1_00440"
                     /note="Ribosomal protein S3, C-terminal domain; Region:
                     Ribosomal_S3_C; pfam00189"
                     /db_xref="CDD:215779"
     gene            116011..116442
                     /gene="rplP"
                     /locus_tag="CDBI1_00445"
                     /db_xref="GeneID:12215650"
     CDS             116011..116442
                     /gene="rplP"
                     /locus_tag="CDBI1_00445"
                     /note="COG0197 Ribosomal protein L16/L10E"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="YP_006197258.1"
                     /db_xref="GI:384359406"
                     /db_xref="GeneID:12215650"
                     /translation="MLMPKRVKRRRVHRGSMAGQAHKGNKVTYGEFGLVALEASWITS
                     NQIEAARIAMTRYIKRGGKVWIKIFPHKPVTRKPAETRMGAGKGSPEYWVAVVKPGRV
                     MFELAGVSEDKAREAMRLAAHKLPIKCKFVKKEDLEVKGGE"
     misc_feature    116077..116406
                     /gene="rplP"
                     /locus_tag="CDBI1_00445"
                     /note="Ribosomal_L16_L10e: L16 is an essential protein in
                     the large ribosomal subunit of bacteria, mitochondria, and
                     chloroplasts. Large subunits that lack L16 are defective
                     in peptidyl transferase activity, peptidyl-tRNA hydrolysis
                     activity, association with...; Region: Ribosomal_L16_L10e;
                     cd01433"
                     /db_xref="CDD:238714"
     misc_feature    order(116077..116079,116083..116088,116095..116097,
                     116143..116148,116155..116157,116164..116166,
                     116176..116178,116185..116187,116203..116211,
                     116215..116217,116221..116223,116233..116238,
                     116257..116271,116311..116313,116365..116370,
                     116377..116382)
                     /gene="rplP"
                     /locus_tag="CDBI1_00445"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238714"
     misc_feature    116122..116127
                     /gene="rplP"
                     /locus_tag="CDBI1_00445"
                     /note="5S rRNA interface [nucleotide binding]; other site"
                     /db_xref="CDD:238714"
     misc_feature    order(116158..116166,116173..116178)
                     /gene="rplP"
                     /locus_tag="CDBI1_00445"
                     /note="putative antibiotic binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:238714"
     misc_feature    order(116185..116187,116194..116199,116203..116205,
                     116329..116331)
                     /gene="rplP"
                     /locus_tag="CDBI1_00445"
                     /note="L25 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238714"
     misc_feature    order(116251..116256,116263..116268)
                     /gene="rplP"
                     /locus_tag="CDBI1_00445"
                     /note="L27 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238714"
     gene            116444..116647
                     /locus_tag="CDBI1_00450"
                     /db_xref="GeneID:12215651"
     CDS             116444..116647
                     /locus_tag="CDBI1_00450"
                     /note="COG0255 Ribosomal protein L29"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="YP_006197259.1"
                     /db_xref="GI:384359407"
                     /db_xref="GeneID:12215651"
                     /translation="MKAKELRDLTSEELMNKLNDFKSELFSLRFQLATGQLENTARIK
                     FVKKDIAKVKTVLAERKLYETRA"
     misc_feature    116453..116623
                     /locus_tag="CDBI1_00450"
                     /note="Ribosomal L29 protein/HIP.  L29 is a protein of the
                     large ribosomal Subunit. A homolog, called heparin/heparan
                     sulfate interacting protein (HIP), has also been
                     identified in mammals.  L29 is located on the surface of
                     the large ribosomal subunit, where it...; Region:
                     Ribosomal_L29_HIP; cd00427"
                     /db_xref="CDD:238243"
     misc_feature    order(116453..116455,116462..116464,116564..116566,
                     116594..116599,116603..116608,116618..116620)
                     /locus_tag="CDBI1_00450"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238243"
     misc_feature    order(116453..116461,116465..116467,116477..116482,
                     116486..116491,116498..116503,116510..116515,
                     116522..116524,116531..116536,116558..116560,
                     116567..116569,116579..116581,116588..116593,
                     116600..116605,116612..116614)
                     /locus_tag="CDBI1_00450"
                     /note="putative translocon interaction site; other site"
                     /db_xref="CDD:238243"
     misc_feature    order(116501..116503,116513..116515,116522..116524,
                     116534..116536,116579..116581)
                     /locus_tag="CDBI1_00450"
                     /note="signal recognition particle (SRP54) interaction
                     site; other site"
                     /db_xref="CDD:238243"
     misc_feature    order(116519..116521,116528..116533)
                     /locus_tag="CDBI1_00450"
                     /note="L23 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238243"
     misc_feature    116540..116545
                     /locus_tag="CDBI1_00450"
                     /note="trigger factor interaction site; other site"
                     /db_xref="CDD:238243"
     gene            116671..116925
                     /locus_tag="CDBI1_00455"
                     /db_xref="GeneID:12215652"
     CDS             116671..116925
                     /locus_tag="CDBI1_00455"
                     /note="COG0186 Ribosomal protein S17"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="YP_006197260.1"
                     /db_xref="GI:384359408"
                     /db_xref="GeneID:12215652"
                     /translation="MERGRRKVRIGRVVSDKMDKTIVVAVEEFVRHPLYNKRVKRTKK
                     FKAHDEKNICNIGDRVKIMETRPLSKDKRFRLVEVVEKVK"
     misc_feature    116713..116922
                     /locus_tag="CDBI1_00455"
                     /note="30S ribosomal protein S17; Reviewed; Region: rpsQ;
                     PRK05610"
                     /db_xref="CDD:235532"
     gene            116951..117319
                     /gene="rplN"
                     /locus_tag="CDBI1_00460"
                     /db_xref="GeneID:12215653"
     CDS             116951..117319
                     /gene="rplN"
                     /locus_tag="CDBI1_00460"
                     /note="COG0093 Ribosomal protein L14"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="YP_006197261.1"
                     /db_xref="GI:384359409"
                     /db_xref="GeneID:12215653"
                     /translation="MIQQESRLRVADNSGAKELLCIRVLGGSKRRYGNIGDVIVATVK
                     SATPGGVVKKGKVVKAVIVRSKQGVRRNDGSYISFDENAAVIIKDDKTPVGTRIFGPV
                     ARELRDNEFMKIVSLAPEVL"
     misc_feature    116951..117316
                     /gene="rplN"
                     /locus_tag="CDBI1_00460"
                     /note="50S ribosomal protein L14; Validated; Region: rplN;
                     PRK05483"
                     /db_xref="CDD:180117"
     gene            117343..117648
                     /gene="rplX"
                     /locus_tag="CDBI1_00465"
                     /db_xref="GeneID:12215654"
     CDS             117343..117648
                     /gene="rplX"
                     /locus_tag="CDBI1_00465"
                     /note="COG0198 Ribosomal protein L24"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="YP_006197262.1"
                     /db_xref="GI:384359410"
                     /db_xref="GeneID:12215654"
                     /translation="MRVKKGDTVVVIAGKDKGKKGSVLKVYPKTSKVLVEGVNVITKH
                     QKPSAMNQQGGIINKEAPIHISNVMPFDPETGKGVRVRYEVKDGNKVRVSAKSGKEL"
     misc_feature    117343..117645
                     /gene="rplX"
                     /locus_tag="CDBI1_00465"
                     /note="50S ribosomal protein L24; Reviewed; Region: rplX;
                     PRK00004"
                     /db_xref="CDD:234566"
     misc_feature    117358..117549
                     /gene="rplX"
                     /locus_tag="CDBI1_00465"
                     /note="KOW motif of Ribosomal Protein L26; Region:
                     KOW_RPL26; cd06089"
                     /db_xref="CDD:240513"
     misc_feature    order(117379..117387,117421..117423,117466..117471,
                     117535..117540)
                     /gene="rplX"
                     /locus_tag="CDBI1_00465"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:240513"
     gene            117678..118220
                     /gene="rplE"
                     /locus_tag="CDBI1_00470"
                     /db_xref="GeneID:12215655"
     CDS             117678..118220
                     /gene="rplE"
                     /locus_tag="CDBI1_00470"
                     /note="COG0094 Ribosomal protein L5"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="YP_006197263.1"
                     /db_xref="GI:384359411"
                     /db_xref="GeneID:12215655"
                     /translation="MASRLQEKYMKEVAPALMEKFGYKNVMEIPKLNKIVINMGIGDA
                     RENPKGLEKGVEELEMISGQKPVITKARKSVANFKLREGMPIGTKVTLRADKMFYFMD
                     KLVSVSLPRVRDFRGVNPNAFDGRGNYALGVKEQLIFPEIEYDKIDKVRGMDIIFVTT
                     AKTDEEARELLKLLGMPFSK"
     misc_feature    117684..118217
                     /gene="rplE"
                     /locus_tag="CDBI1_00470"
                     /note="50S ribosomal protein L5; Validated; Region: rplE;
                     PRK00010"
                     /db_xref="CDD:178791"
     misc_feature    117750..117920
                     /gene="rplE"
                     /locus_tag="CDBI1_00470"
                     /note="Ribosomal protein L5; Region: Ribosomal_L5;
                     pfam00281"
                     /db_xref="CDD:109342"
     misc_feature    117930..118211
                     /gene="rplE"
                     /locus_tag="CDBI1_00470"
                     /note="ribosomal L5P family C-terminus; Region:
                     Ribosomal_L5_C; pfam00673"
                     /db_xref="CDD:201383"
     gene            118238..118423
                     /gene="rpsN"
                     /locus_tag="CDBI1_00475"
                     /db_xref="GeneID:12215656"
     CDS             118238..118423
                     /gene="rpsN"
                     /locus_tag="CDBI1_00475"
                     /note="COG0199 Ribosomal protein S14"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="YP_006197264.1"
                     /db_xref="GI:384359412"
                     /db_xref="GeneID:12215656"
                     /translation="MARKAMVVKQQRKQKYATREYTRCTICGRPHSVLKKFGICRICF
                     RELAYKGQIPGVRKASW"
     misc_feature    118238..118420
                     /gene="rpsN"
                     /locus_tag="CDBI1_00475"
                     /note="30S ribosomal protein S14; Reviewed; Region: rpsN;
                     PRK08061"
                     /db_xref="CDD:181216"
     gene            118456..118854
                     /gene="rpsH"
                     /locus_tag="CDBI1_00480"
                     /db_xref="GeneID:12215657"
     CDS             118456..118854
                     /gene="rpsH"
                     /locus_tag="CDBI1_00480"
                     /note="COG0096 Ribosomal protein S8"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="YP_006197265.1"
                     /db_xref="GI:384359413"
                     /db_xref="GeneID:12215657"
                     /translation="MTMTDPIADMLTRIRNANVVKHETVDVPASNMKKELARILLEEG
                     FIRGYDVIEDGKQGIIRIQLKYGQEGERVITGLKKISKPGMRVYAANHEIPKVLNGLG
                     ISVISTSKGILTDKQARKENVGGEVICYVW"
     misc_feature    118459..118851
                     /gene="rpsH"
                     /locus_tag="CDBI1_00480"
                     /note="30S ribosomal protein S8; Validated; Region: rpsH;
                     PRK00136"
                     /db_xref="CDD:234658"
     gene            118885..119427
                     /gene="rplF"
                     /locus_tag="CDBI1_00485"
                     /db_xref="GeneID:12215658"
     CDS             118885..119427
                     /gene="rplF"
                     /locus_tag="CDBI1_00485"
                     /note="COG0097 Ribosomal protein L6P/L9E"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="YP_006197266.1"
                     /db_xref="GI:384359414"
                     /db_xref="GeneID:12215658"
                     /translation="MSRIGVKPIIIPAGVEVTIAEGNLVTVKGPKGTLTKQLSAELNI
                     KKEENTIMVERPTDNKKHRSLHGLTRTLLDNMVVGVNTGFEKKLELKGVGYRAQKQGK
                     KLVMNLGFSHPVEMEDPEGITVEAPNQTELIVKGIDKQLVGNYAAKIRAWRKPEPYKG
                     KGIKYVDEVIRRKEGKTGKK"
     misc_feature    118885..119421
                     /gene="rplF"
                     /locus_tag="CDBI1_00485"
                     /note="50S ribosomal protein L6; Validated; Region: rplF;
                     PRK05498"
                     /db_xref="CDD:235495"
     misc_feature    118915..119124
                     /gene="rplF"
                     /locus_tag="CDBI1_00485"
                     /note="Ribosomal protein L6; Region: Ribosomal_L6;
                     pfam00347"
                     /db_xref="CDD:215872"
     misc_feature    119158..119379
                     /gene="rplF"
                     /locus_tag="CDBI1_00485"
                     /note="Ribosomal protein L6; Region: Ribosomal_L6;
                     pfam00347"
                     /db_xref="CDD:215872"
     gene            119463..119831
                     /gene="rplR"
                     /locus_tag="CDBI1_00490"
                     /db_xref="GeneID:12215659"
     CDS             119463..119831
                     /gene="rplR"
                     /locus_tag="CDBI1_00490"
                     /note="COG0256 Ribosomal protein L18"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="YP_006197267.1"
                     /db_xref="GI:384359415"
                     /db_xref="GeneID:12215659"
                     /translation="MLKKADKNANRLQRHKRVRRKISGTSQRPRLCVFRSANNIYAQI
                     IDDTKRVTLVAASSLEAEVKSAVNHTGNKEAAKKVGELVAKKAVEKGITEVVFDRGGY
                     LYHGRIQELAEGAREAGLKF"
     misc_feature    119517..119822
                     /gene="rplR"
                     /locus_tag="CDBI1_00490"
                     /note="Ribosomal L18/L5e:  L18 (L5e) is a ribosomal
                     protein found in the central protuberance (CP) of the
                     large subunit. L18 binds 5S rRNA and induces a
                     conformational change that stimulates the binding of L5 to
                     5S rRNA. Association of 5S rRNA with 23S rRNA...; Region:
                     Ribosomal_L18_L5e; cd00432"
                     /db_xref="CDD:238246"
     misc_feature    order(119520..119522,119526..119531,119535..119537,
                     119550..119552,119562..119579,119583..119585,
                     119589..119591,119610..119618,119625..119627,
                     119748..119750,119781..119783)
                     /gene="rplR"
                     /locus_tag="CDBI1_00490"
                     /note="5S rRNA interface [nucleotide binding]; other site"
                     /db_xref="CDD:238246"
     misc_feature    order(119520..119522,119529..119534)
                     /gene="rplR"
                     /locus_tag="CDBI1_00490"
                     /note="L27 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238246"
     misc_feature    order(119523..119528,119751..119753,119760..119762,
                     119808..119810)
                     /gene="rplR"
                     /locus_tag="CDBI1_00490"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238246"
     misc_feature    119766..119768
                     /gene="rplR"
                     /locus_tag="CDBI1_00490"
                     /note="L5 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238246"
     gene            119852..120361
                     /gene="rpsE"
                     /locus_tag="CDBI1_00495"
                     /db_xref="GeneID:12215660"
     CDS             119852..120361
                     /gene="rpsE"
                     /locus_tag="CDBI1_00495"
                     /note="COG0098 Ribosomal protein S5"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="YP_006197268.1"
                     /db_xref="GI:384359416"
                     /db_xref="GeneID:12215660"
                     /translation="MLRRKPIDAGQLDLQEKVVEVRRVTKVVKGGRNFRFAALVVVGD
                     ENGHVGIGAGKAMEVPDAIKKAVEDAKKNLIVVPIVGTTIPHEVRGHFGAGNILIMPA
                     VEGTGVIAGGPARAVLELAGLKDVRAKSLGSNNPRNMVNATIEGLNSLKTVEDIAKLR
                     GKKVEELLG"
     misc_feature    119858..120358
                     /gene="rpsE"
                     /locus_tag="CDBI1_00495"
                     /note="30S ribosomal protein S5; Validated; Region: rpsE;
                     PRK00550"
                     /db_xref="CDD:234790"
     misc_feature    <119951..120088
                     /gene="rpsE"
                     /locus_tag="CDBI1_00495"
                     /note="Ribosomal protein S5, N-terminal domain; Region:
                     Ribosomal_S5; pfam00333"
                     /db_xref="CDD:144065"
     misc_feature    120113..120334
                     /gene="rpsE"
                     /locus_tag="CDBI1_00495"
                     /note="Ribosomal protein S5, C-terminal domain; Region:
                     Ribosomal_S5_C; pfam03719"
                     /db_xref="CDD:190724"
     gene            120376..120561
                     /gene="rpmD"
                     /locus_tag="CDBI1_00500"
                     /db_xref="GeneID:12215661"
     CDS             120376..120561
                     /gene="rpmD"
                     /locus_tag="CDBI1_00500"
                     /note="COG1841 Ribosomal protein L30/L7E"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="YP_006197269.1"
                     /db_xref="GI:384359417"
                     /db_xref="GeneID:12215661"
                     /translation="MAKLQIKLVRSVIGTTPNQKKNVEALGLRKREQVVVKEDNAQTR
                     GMINKVSHLLEVTEIAE"
     misc_feature    120385..120543
                     /gene="rpmD"
                     /locus_tag="CDBI1_00500"
                     /note="Ribosomal protein L30, which is found in eukaryotes
                     and prokaryotes but not in archaea, is one of the smallest
                     ribosomal proteins with a molecular mass of about 7kDa.
                     L30 binds the 23SrRNA as well as the 5S rRNA and is one of
                     five ribosomal proteins that...; Region: Ribosomal_L30;
                     cd01658"
                     /db_xref="CDD:100100"
     misc_feature    order(120403..120408,120412..120417,120421..120429,
                     120436..120441,120448..120456,120460..120462,
                     120469..120471,120484..120489,120496..120504,
                     120508..120513)
                     /gene="rpmD"
                     /locus_tag="CDBI1_00500"
                     /note="23S rRNA binding site [nucleotide binding]; other
                     site"
                     /db_xref="CDD:100100"
     gene            120594..121037
                     /gene="rplO"
                     /locus_tag="CDBI1_00505"
                     /db_xref="GeneID:12215662"
     CDS             120594..121037
                     /gene="rplO"
                     /locus_tag="CDBI1_00505"
                     /note="COG0200 Ribosomal protein L15"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="YP_006197270.1"
                     /db_xref="GI:384359418"
                     /db_xref="GeneID:12215662"
                     /translation="MKLHELKPAEGAVRAKRRLGRGTATGQGKTAGRGQKGQWSRSGG
                     GVRVGFEGGQMPLARRLPKRGFNNIFKKVYTEVNVEVLNRFENGTEITAELLKSTKTI
                     SKIGKDGIKILGEGNLEKALTVKAAKFTASAQEKIEKAGGKAELV"
     misc_feature    120594..121034
                     /gene="rplO"
                     /locus_tag="CDBI1_00505"
                     /note="50S ribosomal protein L15; Reviewed; Region: rplO;
                     PRK05592"
                     /db_xref="CDD:235523"
     gene            121081..122349
                     /locus_tag="CDBI1_00510"
                     /db_xref="GeneID:12215663"
     CDS             121081..122349
                     /locus_tag="CDBI1_00510"
                     /note="COG0201 Preprotein translocase subunit SecY"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase SecY subunit"
                     /protein_id="YP_006197271.1"
                     /db_xref="GI:384359419"
                     /db_xref="GeneID:12215663"
                     /translation="MLSKLKQAWKIKAVRKKVMYTLMMIVIFRIGTTIPVPGIDTSII
                     QKMVGGNSLLSLYNMFTGGAFSNFSLFALGISPYITASIIIQLLTVGFESLAELQKSG
                     EEGKKKINKYTKYTALALAVVQALGITLGIVRSALISNSVFFITTVVITLVSASMLVM
                     WIGDKITEKGIGNGSSVIIFAGIISRIPTDVIKISQQVKSGEVAPWVIVILAVVILLT
                     VTGVTFIQEATRKIPVQYAKRVVGRKMYGGQSSHIPMKVNQSGVMPIIFASSLLAFPQ
                     TIAMFMGPNAQAFVQKYLSMATEQGFWTYRSIEILLIIFFSYFYTTVSFNTEDISKNM
                     KNNGGFIPGIRPGEPTMDYLNRILTRLTLAGATFLAIIAMVPALTTHYMKVNMSLAGT
                     SLLIVVGVALELKRQLESNLVMRSYQGFLK"
     misc_feature    121081..122343
                     /locus_tag="CDBI1_00510"
                     /note="preprotein translocase subunit SecY; Reviewed;
                     Region: secY; PRK09204"
                     /db_xref="CDD:236412"
     misc_feature    121285..122292
                     /locus_tag="CDBI1_00510"
                     /note="SecY translocase; Region: SecY; pfam00344"
                     /db_xref="CDD:215869"
     gene            122366..123016
                     /gene="adk"
                     /locus_tag="CDBI1_00515"
                     /db_xref="GeneID:12215664"
     CDS             122366..123016
                     /gene="adk"
                     /locus_tag="CDBI1_00515"
                     /EC_number="2.7.4.3"
                     /note="COG0563 Adenylate kinase and related kinases"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="YP_006197272.1"
                     /db_xref="GI:384359420"
                     /db_xref="GeneID:12215664"
                     /translation="MRIILLGPPGAGKGTQAAGIVEKYNIPHISTGDIFRKNIKEGTE
                     LGKKAKEYMDQGLLVPDELTVGLVTDRISQEDCKNGFMLDGFPRNVAQGEHLDIFLKN
                     AGISLDKVVNIEVDKSILVSRAVGRRICKSCGATYHVEFNPPKVEGVCDVCQGELYQR
                     ADDNEETVSKRIQVYLDETKPLVDYYSKQGIIADIKGDQAIDKVFEDIVAALGSGK"
     misc_feature    122366..123007
                     /gene="adk"
                     /locus_tag="CDBI1_00515"
                     /note="adenylate kinase; Reviewed; Region: adk; PRK00279"
                     /db_xref="CDD:234711"
     misc_feature    122369..122977
                     /gene="adk"
                     /locus_tag="CDBI1_00515"
                     /note="Adenylate kinase (ADK) catalyzes the reversible
                     phosphoryl transfer from adenosine triphosphates (ATP) to
                     adenosine monophosphates (AMP) and to yield adenosine
                     diphosphates (ADP). This enzyme is required for the
                     biosynthesis of ADP and is essential for...; Region: ADK;
                     cd01428"
                     /db_xref="CDD:238713"
     misc_feature    order(122456..122458,122471..122473,122540..122542,
                     122615..122620,122624..122629,122639..122641)
                     /gene="adk"
                     /locus_tag="CDBI1_00515"
                     /note="AMP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238713"
     misc_feature    order(122471..122473,122615..122617,122627..122629,
                     122744..122746,122876..122878,122888..122890)
                     /gene="adk"
                     /locus_tag="CDBI1_00515"
                     /note="ATP-AMP (Ap5A)-binding site [chemical binding];
                     other site"
                     /db_xref="CDD:238713"
     gene            123017..123763
                     /locus_tag="CDBI1_00520"
                     /db_xref="GeneID:12215665"
     CDS             123017..123763
                     /locus_tag="CDBI1_00520"
                     /note="COG0024 Methionine aminopeptidase"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine aminopeptidase"
                     /protein_id="YP_006197273.1"
                     /db_xref="GI:384359421"
                     /db_xref="GeneID:12215665"
                     /translation="MIILKSKKEIELLREAGKIVADTHEVLRKAISPGISTLELDKIA
                     EENIRKYNAEPSFKGYGGFPGSICASINREVVHGIPGETILQEGDIVSLDIGAYYKGY
                     HGDSAKTHGVGMISEEDRKLIEVTRESFYEGIKFAKLGYRLSDISHAVQTHVEKHGFS
                     VVRDLVGHGVGANLHEDPQVPNYGLPGKGPRLREGMVIAIEPMVNAGRYHVKTLSDGW
                     TTVTIDGKKSAHYEHTIAITEHEPLILTKL"
     misc_feature    123044..123757
                     /locus_tag="CDBI1_00520"
                     /note="Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
                     known as methionyl aminopeptidase and Peptidase M.
                     Catalyzes release of N-terminal amino acids,
                     preferentially methionine, from peptides and arylamides;
                     Region: MetAP1; cd01086"
                     /db_xref="CDD:238519"
     misc_feature    order(123245..123247,123296..123298,123329..123331,
                     123518..123520,123617..123619,123710..123712)
                     /locus_tag="CDBI1_00520"
                     /note="active site"
                     /db_xref="CDD:238519"
     gene            123785..124054
                     /locus_tag="CDBI1_00525"
                     /db_xref="GeneID:12215666"
     CDS             123785..124054
                     /locus_tag="CDBI1_00525"
                     /note="COG2163 Ribosomal protein L14E/L6E/L27E"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein"
                     /protein_id="YP_006197274.1"
                     /db_xref="GI:384359422"
                     /db_xref="GeneID:12215666"
                     /translation="MLSDNLSIGQVVKVSLGRDKGNLFFVVKIINNEYVLIADGKKRK
                     LDKPKLKKVKHLKKYNFINDEVRKRVVSGQEITDSFLRAELTKLN"
     misc_feature    123806..124030
                     /locus_tag="CDBI1_00525"
                     /note="KOW motif of Ribosomal Protein L14; Region:
                     KOW_RPL14; cd06088"
                     /db_xref="CDD:240512"
     misc_feature    order(123821..123823,123827..123832,123866..123868,
                     123878..123880,123884..123889,123938..123940,
                     123944..123949,123953..123955,123983..123985,
                     123992..123994,123998..124003)
                     /locus_tag="CDBI1_00525"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:240512"
     gene            124092..124310
                     /gene="infA"
                     /locus_tag="CDBI1_00530"
                     /db_xref="GeneID:12215667"
     CDS             124092..124310
                     /gene="infA"
                     /locus_tag="CDBI1_00530"
                     /note="COG0361 Translation initiation factor 1 (IF-1)"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="YP_006197275.1"
                     /db_xref="GI:384359423"
                     /db_xref="GeneID:12215667"
                     /translation="MAKKDVIELEGTVSEALPNAMFKVKLENGHEILCHISGKLRMNF
                     IRILEGDKVNVELSPYDLTRGRITWRKK"
     misc_feature    124110..124301
                     /gene="infA"
                     /locus_tag="CDBI1_00530"
                     /note="S1_IF1: Translation Initiation Factor IF1, S1-like
                     RNA-binding domain. IF1 contains an S1-like RNA-binding
                     domain, which is found in a wide variety of RNA-associated
                     proteins. Translation initiation includes a number of
                     interrelated steps preceding the...; Region: S1_IF1;
                     cd04451"
                     /db_xref="CDD:239898"
     misc_feature    order(124134..124142,124158..124160,124194..124196,
                     124203..124208,124221..124232,124281..124283,
                     124287..124289)
                     /gene="infA"
                     /locus_tag="CDBI1_00530"
                     /note="rRNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:239898"
     misc_feature    order(124194..124196,124206..124208,124299..124301)
                     /gene="infA"
                     /locus_tag="CDBI1_00530"
                     /note="predicted 30S ribosome binding site; other site"
                     /db_xref="CDD:239898"
     gene            124346..124459
                     /gene="rpmJ"
                     /locus_tag="CDBI1_00535"
                     /db_xref="GeneID:12215668"
     CDS             124346..124459
                     /gene="rpmJ"
                     /locus_tag="CDBI1_00535"
                     /note="COG0257 Ribosomal protein L36"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="YP_006197276.1"
                     /db_xref="GI:384359424"
                     /db_xref="GeneID:12215668"
                     /translation="MKVRPSVKPICEKCKVIKRKGKVMVICENPKHKQKQG"
     misc_feature    124346..124456
                     /gene="rpmJ"
                     /locus_tag="CDBI1_00535"
                     /note="50S ribosomal protein L36; Reviewed; Region: rpmJ;
                     PRK00465"
                     /db_xref="CDD:179039"
     gene            124612..124983
                     /gene="rpsM"
                     /locus_tag="CDBI1_00540"
                     /db_xref="GeneID:12215669"
     CDS             124612..124983
                     /gene="rpsM"
                     /locus_tag="CDBI1_00540"
                     /note="COG0099 Ribosomal protein S13"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="YP_006197277.1"
                     /db_xref="GI:384359425"
                     /db_xref="GeneID:12215669"
                     /translation="MARIAGVDLPREKRAEIGLTYIYGIGKATANEILAKAEINPDTR
                     IKDLSEDQVNELRKVIDDDFLVEGDLRREIALNIKRLRDIKCYRGIRHAKGLPLRGQR
                     TKTNARTRKGPRKTVSRKKKK"
     misc_feature    124612..124977
                     /gene="rpsM"
                     /locus_tag="CDBI1_00540"
                     /note="30S ribosomal protein S13; Validated; Region: rpsM;
                     PRK05179"
                     /db_xref="CDD:235358"
     misc_feature    124618..124956
                     /gene="rpsM"
                     /locus_tag="CDBI1_00540"
                     /note="30S ribosomal protein S13; Region: bact_S13;
                     TIGR03631"
                     /db_xref="CDD:213840"
     gene            125019..125417
                     /locus_tag="CDBI1_00545"
                     /db_xref="GeneID:12215670"
     CDS             125019..125417
                     /locus_tag="CDBI1_00545"
                     /note="COG0100 Ribosomal protein S11"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="YP_006197278.1"
                     /db_xref="GI:384359426"
                     /db_xref="GeneID:12215670"
                     /translation="MAKPKKKVTRIRRRERKNIERGHAHIQSTFNNTIITLTDVHGNA
                     ISWASSGQLGFKGSRKSTPFASQMAAETAAKAAMEHGLKSVEVFVKGPGSGREAAIRA
                     LQATGLEVTMIKDVTPIPHNGCRPPKRRRV"
     misc_feature    125082..125414
                     /locus_tag="CDBI1_00545"
                     /note="30S ribosomal protein S11; Validated; Region:
                     PRK05309"
                     /db_xref="CDD:180007"
     gene            125449..126072
                     /gene="rpsD"
                     /locus_tag="CDBI1_00550"
                     /db_xref="GeneID:12215671"
     CDS             125449..126072
                     /gene="rpsD"
                     /locus_tag="CDBI1_00550"
                     /note="COG0522 Ribosomal protein S4 and related proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="YP_006197279.1"
                     /db_xref="GI:384359427"
                     /db_xref="GeneID:12215671"
                     /translation="MARYTGASCRQCRREGMKLFLKGDRCYTDKCAIVKRNYAPGQHG
                     QGRKKVSNYGLQLREKQKVKRIYGVLETQFRNLYERAENMPGKAGENLLSLLERRLDN
                     VVYRMGLASSRKEARQLVTHGHFTLNGNKVDIPSLIVKVGDVIEVKEKSRSSAKFKNL
                     VEVNSRIAPKWLEANVEGMTAKVVGVPTREDIDLEIAEHLIIELYSK"
     misc_feature    125449..126069
                     /gene="rpsD"
                     /locus_tag="CDBI1_00550"
                     /note="30S ribosomal protein S4; Validated; Region: rpsD;
                     PRK05327"
                     /db_xref="CDD:235411"
     misc_feature    125452..125739
                     /gene="rpsD"
                     /locus_tag="CDBI1_00550"
                     /note="Ribosomal protein S4/S9 N-terminal domain; Region:
                     Ribosomal_S4; pfam00163"
                     /db_xref="CDD:215762"
     misc_feature    125740..125922
                     /gene="rpsD"
                     /locus_tag="CDBI1_00550"
                     /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
                     domain surface is populated by conserved, charged residues
                     that define a likely RNA-binding site;  Found in stress
                     proteins, ribosomal proteins and tRNA synthetases; This
                     may imply a hitherto unrecognized...; Region: S4; cd00165"
                     /db_xref="CDD:238095"
     misc_feature    order(125743..125745,125779..125784,125788..125793,
                     125797..125802,125809..125814,125818..125820,
                     125839..125862,125866..125868)
                     /gene="rpsD"
                     /locus_tag="CDBI1_00550"
                     /note="RNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238095"
     gene            126150..127097
                     /locus_tag="CDBI1_00555"
                     /db_xref="GeneID:12215672"
     CDS             126150..127097
                     /locus_tag="CDBI1_00555"
                     /EC_number="2.7.7.6"
                     /note="'COG0202 DNA-directed RNA polymerase, alpha
                     subunit/40 kD subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="YP_006197280.1"
                     /db_xref="GI:384359428"
                     /db_xref="GeneID:12215672"
                     /translation="MIEIEKPKVDIVELSEDYRYGKFVIEPLERGYGITIGNALRRIL
                     LSSLPGVAVNAIKIDGVLHEFSTIPGVKEDVTEIILTLKELSATIDGEGSRTLKIEAQ
                     GPCSITGADIICPPDVEILSKDLAIATLDDNAKLNMEIFVDKGRGYVSAEENKTENVP
                     IGVLPVDSIYTPVEKVSYHVENTRVGQKTDYDKLVLEVWTNGSINPQEGISLAAKVLV
                     EHLNLFIDLTEHVSSVEIMVEKEEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVEE
                     LANKSEDDMMKVRNLGKKSLEEVIQKLEELGLGLKPSEE"
     misc_feature    126153..127082
                     /locus_tag="CDBI1_00555"
                     /note="DNA-directed RNA polymerase subunit alpha;
                     Provisional; Region: PRK05182"
                     /db_xref="CDD:235359"
     misc_feature    126192..126821
                     /locus_tag="CDBI1_00555"
                     /note="N-terminal domain of the Alpha subunit of Bacterial
                     RNA polymerase; Region: RNAP_alpha_NTD; cd06928"
                     /db_xref="CDD:132904"
     misc_feature    order(126213..126215,126249..126251,126261..126263,
                     126270..126275,126336..126338,126342..126344,
                     126348..126350,126354..126365,126378..126380,
                     126396..126398,126540..126542,126591..126593,
                     126648..126650,126654..126656,126672..126680,
                     126684..126695,126723..126725,126732..126734,
                     126738..126740)
                     /locus_tag="CDBI1_00555"
                     /note="alphaNTD - beta interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:132904"
     misc_feature    order(126222..126224,126231..126233,126237..126245,
                     126252..126254,126264..126266,126273..126278,
                     126288..126290,126789..126791,126798..126803,
                     126807..126812,126816..126821)
                     /locus_tag="CDBI1_00555"
                     /note="alphaNTD homodimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:132904"
     misc_feature    order(126342..126344,126378..126380,126387..126389,
                     126396..126401,126588..126593,126597..126599,
                     126654..126656,126669..126674,126699..126701)
                     /locus_tag="CDBI1_00555"
                     /note="alphaNTD - beta' interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:132904"
     misc_feature    126864..127064
                     /locus_tag="CDBI1_00555"
                     /note="Bacterial RNA polymerase, alpha chain C terminal
                     domain; Region: RNA_pol_A_CTD; pfam03118"
                     /db_xref="CDD:202541"
     gene            127118..127459
                     /gene="rplQ"
                     /locus_tag="CDBI1_00560"
                     /db_xref="GeneID:12215673"
     CDS             127118..127459
                     /gene="rplQ"
                     /locus_tag="CDBI1_00560"
                     /note="COG0203 Ribosomal protein L17"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="YP_006197281.1"
                     /db_xref="GI:384359429"
                     /db_xref="GeneID:12215673"
                     /translation="MAKYRKLGRETAHRNLMLRNLVTCLLRSGRIETTVTRAKETRRM
                     AEKMITLAKRGDLHARRQVLAYVMDETVVNNLFTDLAPKYAERNGGYTRIIKIGPRKG
                     DAAEMAFIELV"
     misc_feature    127118..127456
                     /gene="rplQ"
                     /locus_tag="CDBI1_00560"
                     /note="50S ribosomal protein L17; Validated; Region: rplQ;
                     PRK05591"
                     /db_xref="CDD:235522"
     gene            127580..128413
                     /locus_tag="CDBI1_00565"
                     /db_xref="GeneID:12215674"
     CDS             127580..128413
                     /locus_tag="CDBI1_00565"
                     /note="'COG1122 ABC-type cobalt transport system, ATPase
                     component'"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt transporter ATP-binding subunit"
                     /protein_id="YP_006197282.1"
                     /db_xref="GI:384359430"
                     /db_xref="GeneID:12215674"
                     /translation="MDNIVKVNNISFEYITDEAKLKAIDNLSLDVKKGEFVAIIGHNG
                     SGKSTLSKNLNAILMPTEGNILIDDMDTKEEERLWDIRQTAGMVFQNPDNQIVATIVE
                     EDVAFGPENLGIEPKEIRRIVEESLKSVGMYDLRDRQPHLLSGGQKQRVAIAGIIAMR
                     PKCIIFDEATAMLDPSGRKEVMKTIKRLNKEENITVIHITHFMEEAVEADRVVVMEKG
                     KKILEGTPREVFSKIKMLKEIGLDVPCMTELSSLLIEEGINISSDILTVDEMVMELCQ
                     L"
     misc_feature    127580..128410
                     /locus_tag="CDBI1_00565"
                     /note="cobalt transporter ATP-binding subunit;
                     Provisional; Region: PRK13633"
                     /db_xref="CDD:237453"
     misc_feature    127595..128236
                     /locus_tag="CDBI1_00565"
                     /note="First domain of the ATP-binding cassette component
                     of cobalt transport system; Region:
                     ABC_cobalt_CbiO_domain1; cd03225"
                     /db_xref="CDD:213192"
     misc_feature    127700..127723
                     /locus_tag="CDBI1_00565"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213192"
     misc_feature    order(127709..127714,127718..127726,127847..127849,
                     128078..128083,128180..128182)
                     /locus_tag="CDBI1_00565"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213192"
     misc_feature    127838..127849
                     /locus_tag="CDBI1_00565"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213192"
     misc_feature    128006..128035
                     /locus_tag="CDBI1_00565"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213192"
     misc_feature    128066..128083
                     /locus_tag="CDBI1_00565"
                     /note="Walker B; other site"
                     /db_xref="CDD:213192"
     misc_feature    128090..128101
                     /locus_tag="CDBI1_00565"
                     /note="D-loop; other site"
                     /db_xref="CDD:213192"
     misc_feature    128168..128188
                     /locus_tag="CDBI1_00565"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213192"
     gene            128401..129267
                     /gene="cbiO"
                     /locus_tag="CDBI1_00570"
                     /db_xref="GeneID:12215675"
     CDS             128401..129267
                     /gene="cbiO"
                     /locus_tag="CDBI1_00570"
                     /note="'COG1122 ABC-type cobalt transport system, ATPase
                     component'"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt transporter ATP-binding subunit"
                     /protein_id="YP_006197283.1"
                     /db_xref="GI:384359431"
                     /db_xref="GeneID:12215675"
                     /translation="MSIIVKNLTHIYNEGMPFASKALDDISFEIKDRDFVGLIGHTGS
                     GKSTLIQHLNGLLKPSSGEIFINDFNITDKNLNLTEIRKRVGVVFQYPEYQLFEETID
                     KDIAFGPSNLGLEESEIHNRVKASMEAVGLDYEGFKDKSPFELSGGQKRRVAIAGVIA
                     MNPEVLILDEPTAGLDPGGRDEIFNLIKDLHEKKNMTIILSSHSMDDMAKLAKTLIVM
                     NHGSVEFMGTPREVFKSNASKLKDIGLDIPQVLELALKLREKGFDISEDILTLEEAKQ
                     EILKVVRGRGLC"
     misc_feature    128401..129264
                     /gene="cbiO"
                     /locus_tag="CDBI1_00570"
                     /note="cobalt transporter ATP-binding subunit;
                     Provisional; Region: cbiO; PRK13637"
                     /db_xref="CDD:237455"
     misc_feature    128413..129063
                     /gene="cbiO"
                     /locus_tag="CDBI1_00570"
                     /note="First domain of the ATP-binding cassette component
                     of cobalt transport system; Region:
                     ABC_cobalt_CbiO_domain1; cd03225"
                     /db_xref="CDD:213192"
     misc_feature    128518..128541
                     /gene="cbiO"
                     /locus_tag="CDBI1_00570"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213192"
     misc_feature    order(128527..128532,128536..128544,128668..128670,
                     128905..128910,129007..129009)
                     /gene="cbiO"
                     /locus_tag="CDBI1_00570"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213192"
     misc_feature    128659..128670
                     /gene="cbiO"
                     /locus_tag="CDBI1_00570"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213192"
     misc_feature    128833..128862
                     /gene="cbiO"
                     /locus_tag="CDBI1_00570"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213192"
     misc_feature    128893..128910
                     /gene="cbiO"
                     /locus_tag="CDBI1_00570"
                     /note="Walker B; other site"
                     /db_xref="CDD:213192"
     misc_feature    128917..128928
                     /gene="cbiO"
                     /locus_tag="CDBI1_00570"
                     /note="D-loop; other site"
                     /db_xref="CDD:213192"
     misc_feature    128995..129015
                     /gene="cbiO"
                     /locus_tag="CDBI1_00570"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213192"
     gene            129261..130064
                     /locus_tag="CDBI1_00575"
                     /db_xref="GeneID:12215676"
     CDS             129261..130064
                     /locus_tag="CDBI1_00575"
                     /note="'COG0619 ABC-type cobalt transport system, permease
                     component CbiQ and related transporters'"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="YP_006197284.1"
                     /db_xref="GI:384359432"
                     /db_xref="GeneID:12215676"
                     /translation="MLKDITIGQYYPTSSAIHKLDPRIKLVATIVFMVSIFVVNKFWP
                     YIVVLLCLLAMIKLANIPVKYIVKGVKPLKWIILFTFLINIFFLPGDEIWSFGFLAIT
                     KQGLRQAIFMAIRLIFLVVGTSLLTLTTSPIELTDGIERLLNPFKKIGLPVHELAMMM
                     TIALRFIPTLLDETDKIMKAQMSRGADFESKNLINRAKNLVPLLVPLFVSAFRRADEL
                     AMAMEARCYRGGHNRTKMRESVISRRDYMACVFQVVYLGAIIATRFIAI"
     misc_feature    129273..130055
                     /locus_tag="CDBI1_00575"
                     /note="ABC-type cobalt transport system, permease
                     component CbiQ and related transporters [Inorganic ion
                     transport and metabolism]; Region: CbiQ; COG0619"
                     /db_xref="CDD:223692"
     gene            130096..130827
                     /locus_tag="CDBI1_00580"
                     /db_xref="GeneID:12215677"
     CDS             130096..130827
                     /locus_tag="CDBI1_00580"
                     /note="COG0101 Pseudouridylate synthase"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine synthase ACD"
                     /protein_id="YP_006197285.1"
                     /db_xref="GI:384359433"
                     /db_xref="GeneID:12215677"
                     /translation="MRNIKIKIQYNGKNYCGWQKQPDSLGIQGTIERAIYDITKEETS
                     LIGSGRTDSGVHAIGQIANFKINSGISIESIPMALNAKLPKDISVIEACEVNDDFHSR
                     YSAKGKTYKYLVYNSKFRNPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMSSG
                     SSVKDTVRTIYDIDISKKDDLITFEISGNGFLYNMVRIIVGTLVDMGRGRINEPFLDI
                     IQSKTRSRCGHTAPAQGLFLKKVHY"
     misc_feature    130096..130824
                     /locus_tag="CDBI1_00580"
                     /note="tRNA pseudouridine synthase A; Validated; Region:
                     truA; PRK00021"
                     /db_xref="CDD:234577"
     misc_feature    130111..130824
                     /locus_tag="CDBI1_00580"
                     /note="Eukaryotic and bacterial pseudouridine synthases
                     similar to E.  coli TruA; Region: PseudoU_synth_EcTruA;
                     cd02570"
                     /db_xref="CDD:211337"
     misc_feature    order(130120..130122,130333..130335,130342..130365)
                     /locus_tag="CDBI1_00580"
                     /note="dimerization interface 3.5A [polypeptide binding];
                     other site"
                     /db_xref="CDD:211337"
     misc_feature    order(130240..130251,130684..130686)
                     /locus_tag="CDBI1_00580"
                     /note="active site"
                     /db_xref="CDD:211337"
     gene            130947..131378
                     /gene="rplM"
                     /locus_tag="CDBI1_00585"
                     /db_xref="GeneID:12215678"
     CDS             130947..131378
                     /gene="rplM"
                     /locus_tag="CDBI1_00585"
                     /note="COG0102 Ribosomal protein L13"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="YP_006197286.1"
                     /db_xref="GI:384359434"
                     /db_xref="GeneID:12215678"
                     /translation="MKSYIAKPADVQRKWYLVDAEGKTLGRLATEIATVLRGKHKPTF
                     TPHVDGGDFVVVVNAEKIVLSGKKLDQKYYRYHTGYVGGLKEISYRDMMDKKPEEVIS
                     HAVSGMLPKNKLRSRMMTRLRVFAGAEHTHAAQNPEVLNFK"
     misc_feature    130989..131330
                     /gene="rplM"
                     /locus_tag="CDBI1_00585"
                     /note="Ribosomal protein L13.  Protein L13, a large
                     ribosomal subunit protein, is one of five proteins
                     required for an early folding intermediate of 23S rRNA in
                     the assembly of the large subunit. L13 is situated on the
                     bottom of the large subunit, near the...; Region:
                     Ribosomal_L13; cd00392"
                     /db_xref="CDD:238230"
     misc_feature    order(131016..131018,131022..131027,131034..131036,
                     131043..131045,131055..131057,131139..131141,
                     131145..131147,131229..131234,131250..131258,
                     131262..131270,131274..131282,131286..131288,
                     131292..131294,131304..131306,131313..131318)
                     /gene="rplM"
                     /locus_tag="CDBI1_00585"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238230"
     misc_feature    131232..131234
                     /gene="rplM"
                     /locus_tag="CDBI1_00585"
                     /note="L3 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238230"
     gene            131407..131799
                     /gene="rpsI"
                     /locus_tag="CDBI1_00590"
                     /db_xref="GeneID:12215679"
     CDS             131407..131799
                     /gene="rpsI"
                     /locus_tag="CDBI1_00590"
                     /note="COG0103 Ribosomal protein S9"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="YP_006197287.1"
                     /db_xref="GI:384359435"
                     /db_xref="GeneID:12215679"
                     /translation="MANVQYYGTGRRKSSVARVRLVAGEGNILVNGRALENYFNYETL
                     IRDVKQPLVLTGNENKYDVIVKVEGGGFTGQAGAIRHGISRALLKADLDLRPALKKEG
                     FLTRDARMKERKKYGLKAARRAPQFSKR"
     misc_feature    131407..131796
                     /gene="rpsI"
                     /locus_tag="CDBI1_00590"
                     /note="30S ribosomal protein S9; Reviewed; Region: rpsI;
                     PRK00132"
                     /db_xref="CDD:178888"
     gene            132258..133010
                     /locus_tag="CDBI1_00595"
                     /db_xref="GeneID:12215760"
     CDS             132258..133010
                     /locus_tag="CDBI1_00595"
                     /note="COG0860 N-acetylmuramoyl-L-alanine amidase"
                     /codon_start=1
                     /transl_table=11
                     /product="germination-specific N-acetylmuramoyl-L-alanine
                     amidase"
                     /protein_id="YP_006197288.1"
                     /db_xref="GI:384359436"
                     /db_xref="GeneID:12215760"
                     /translation="MEYYSVFISIHIQGDVVRKYIKHIIFSFAMICLVVVSIFEIKNI
                     SEDVIKYMPVTNKTIILDAGHGGIDPGALNKDKSTSEKDINLAITLKLRELIESSGGL
                     VILTREDDSSLYKEENNKTTRQKYNENLKNRKEIISNSNANMFVSIHLNAFEQSKYYG
                     AQTFYPKDKQDSKELSKCIQEELKRVVDKTNNREVKPRDDIYLLKENNIPSVLIECGF
                     LSNEKECKLLTDETYQEKIAWAIYIGIQKYLS"
     misc_feature    132375..133007
                     /locus_tag="CDBI1_00595"
                     /note="N-acetylmuramoyl-L-alanine amidase [Cell envelope
                     biogenesis, outer membrane]; Region: AmiC; COG0860"
                     /db_xref="CDD:223929"
     misc_feature    132429..132995
                     /locus_tag="CDBI1_00595"
                     /note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
                     (also known as peptidoglycan aminohydrolase, NAMLA
                     amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
                     3.5.1.28) is an autolysin that hydrolyzes the amide bond
                     between N-acetylmuramoyl and L-amino...; Region:
                     MurNAc-LAA; cd02696"
                     /db_xref="CDD:119407"
     misc_feature    order(132450..132452,132498..132500,132702..132704,
                     132900..132902)
                     /locus_tag="CDBI1_00595"
                     /note="active site"
                     /db_xref="CDD:119407"
     misc_feature    order(132450..132452,132498..132500,132702..132704)
                     /locus_tag="CDBI1_00595"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:119407"
     gene            133293..134805
                     /locus_tag="CDBI1_r18392"
                     /db_xref="GeneID:12215761"
     rRNA            133293..134805
                     /locus_tag="CDBI1_r18392"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:12215761"
     gene            134852..134927
                     /locus_tag="CDBI1_t18306"
                     /db_xref="GeneID:12215762"
     tRNA            134852..134927
                     /locus_tag="CDBI1_t18306"
                     /product="tRNA-Ala"
                     /db_xref="GeneID:12215762"
     misc_feature    135227..138048
                     /note="potential RNA of insufficient length (23S ribosomal
                     RNA)"
     gene            138230..138346
                     /locus_tag="CDBI1_r18370"
                     /db_xref="GeneID:12215763"
     rRNA            138230..138346
                     /locus_tag="CDBI1_r18370"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:12215763"
     gene            138353..138427
                     /locus_tag="CDBI1_t18308"
                     /db_xref="GeneID:12215764"
     tRNA            138353..138427
                     /locus_tag="CDBI1_t18308"
                     /product="tRNA-Asn"
                     /db_xref="GeneID:12215764"
     misc_feature    138419..138700
                     /note="potential protein location (hypothetical protein
                     CDBI1_00600 [Clostridium difficile BI1]) that overlaps RNA
                     (tRNA-D)"
     gene            138432..138506
                     /locus_tag="CDBI1_t18310"
                     /db_xref="GeneID:12215765"
     tRNA            138432..138506
                     /locus_tag="CDBI1_t18310"
                     /product="tRNA-Glu"
                     /db_xref="GeneID:12215765"
     gene            138512..138587
                     /locus_tag="CDBI1_t18312"
                     /db_xref="GeneID:12215766"
     tRNA            138512..138587
                     /locus_tag="CDBI1_t18312"
                     /product="tRNA-Val"
                     /db_xref="GeneID:12215766"
     gene            138593..138669
                     /locus_tag="CDBI1_t18314"
                     /db_xref="GeneID:12215767"
     tRNA            138593..138669
                     /locus_tag="CDBI1_t18314"
                     /product="tRNA-Asp"
                     /db_xref="GeneID:12215767"
     gene            138680..138754
                     /locus_tag="CDBI1_t18316"
                     /db_xref="GeneID:12215768"
     tRNA            138680..138754
                     /locus_tag="CDBI1_t18316"
                     /product="tRNA-Thr"
                     /db_xref="GeneID:12215768"
     gene            138870..140382
                     /locus_tag="CDBI1_r18394"
                     /db_xref="GeneID:12215769"
     rRNA            138870..140382
                     /locus_tag="CDBI1_r18394"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:12215769"
     gene            140429..140504
                     /locus_tag="CDBI1_t18318"
                     /db_xref="GeneID:12215770"
     tRNA            140429..140504
                     /locus_tag="CDBI1_t18318"
                     /product="tRNA-Ala"
                     /db_xref="GeneID:12215770"
     misc_feature    140804..143625
                     /note="potential RNA of insufficient length (23S ribosomal
                     RNA)"
     gene            143802..143918
                     /locus_tag="CDBI1_r18372"
                     /db_xref="GeneID:12215771"
     rRNA            143802..143918
                     /locus_tag="CDBI1_r18372"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:12215771"
     gene            complement(144132..145316)
                     /locus_tag="CDBI1_00605"
                     /db_xref="GeneID:12215772"
     CDS             complement(144132..145316)
                     /locus_tag="CDBI1_00605"
                     /note="COG0436 Aspartate/tyrosine/aromatic
                     aminotransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase"
                     /protein_id="YP_006197289.1"
                     /db_xref="GI:384359437"
                     /db_xref="GeneID:12215772"
                     /translation="MLSKRLNFITPSYTIGISSKVKEMESNGVKVINLSIGEPDFNVP
                     NNAKSYGIDSLNKDYTKYDLVPGLKILREEICKKLIEENNCNYSIDEIVVSSGAKNSI
                     TNTLLALTDEGDEVLLPKPYWVSYPEMIKLVNAVPVFIDTKKENGFKLTKEELEKSIT
                     DKTKILVINNPSNPTGSVYTKDELIEIVDVCIQNKIYILADEIYEKICYTGEFTSIAS
                     LSEEAKDITITINGFSKSAAMTGLRLGYTASNKTIAKAMSSIQGHLISHPSLTAQYIA
                     YGALKDCSIDIDNMVKTYKSRRDLIKSKLDSIDNVGYVNPNGAFYIFIDLSKVSEKFE
                     YKDSFSIEFCNQFLEEYNVAVVPGIAFGMDKYIRISYACSENTFLSGLDKLKEFVYKI
                     MA"
     misc_feature    complement(144138..145316)
                     /locus_tag="CDBI1_00605"
                     /note="aspartate aminotransferase; Provisional; Region:
                     PRK05764"
                     /db_xref="CDD:235596"
     misc_feature    complement(144156..145223)
                     /locus_tag="CDBI1_00605"
                     /note="Aspartate aminotransferase family. This family
                     belongs to pyridoxal phosphate (PLP)-dependent aspartate
                     aminotransferase superfamily (fold I). Pyridoxal phosphate
                     combines with an alpha-amino acid to form a compound
                     called a Schiff base or aldimine...; Region: AAT_like;
                     cd00609"
                     /db_xref="CDD:99734"
     misc_feature    complement(order(144588..144590,144612..144617,
                     144621..144623,144705..144707,144798..144800,
                     144948..144950,145020..145028))
                     /locus_tag="CDBI1_00605"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:99734"
     misc_feature    complement(order(144492..144494,144501..144503,
                     144588..144596,144726..144728,144918..144920,
                     145017..145019))
                     /locus_tag="CDBI1_00605"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99734"
     misc_feature    complement(144612..144614)
                     /locus_tag="CDBI1_00605"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99734"
     gene            145689..148040
                     /locus_tag="CDBI1_00610"
                     /db_xref="GeneID:12215773"
     CDS             145689..148040
                     /locus_tag="CDBI1_00610"
                     /EC_number="1.17.4.2"
                     /note="COG1328 Oxygen-sensitive
                     ribonucleoside-triphosphate reductase"
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside triphosphate reductase"
                     /protein_id="YP_006197290.1"
                     /db_xref="GI:384359438"
                     /db_xref="GeneID:12215773"
                     /translation="MVEFVKKRDGRVIPFNEDRITRAIFLAATNVAEREGIVPDYKLS
                     EQLTQEVIKFLNHKYSESVPSVEDIQDSVVKVLIETGHAKTSEEYIIYRTERSRIRNS
                     KTRLMKAIEEITFEDAEDADIKRENANINGNTAMGTMLQYGSTVSKEFCKTHILKPEH
                     SFAHDNGDIHIHDMDFLNMGTLTCCQIDVKKLFNGGFSTGHGFLREPQDIISYGALAA
                     IAIQSNQNDQHGGQSIPFFDYGLAEGVYKTFKKFYIGNLAKALKLFKGIENNDVIKNI
                     VYNTEKETNQKVGLKRDELYLNLEKEKLIQTFDIDDELVNKMQNFAFEESYRETDKKT
                     YQSMEAFIHNLNTMHSRAGAQVPFSSVNFGTDTSEEGRMVTKNLLLSQERGLGNGETP
                     IFPILIFKVKEGINLNPEDPNYDLFKLSCRVSAKRLFPNFSFLDAPFNAKYYKKGEPD
                     TEATYMGCRTRVLSNVCGSETVSGRGNISFTTVNLPRLGIKHGIINNEKANLDGFFEE
                     LDEKINLIIEQLLERFEVQGNKKMKNFPFLMGQGVWKGSDDLVPEDTLKEVIKQGTLT
                     IGFIGLAECLIALIGKHHGESKEAQELGLKIVSHMRHKMDEATDKYKLNFSLMGTPAE
                     GLSGRFTKIDKKVYGEIKGITDKEYYTNSFHVPVYYNISAYDKIEIEAPYHELTNAGH
                     ITYVELDGDPSDNLEAFETVIKAMKDLGIGYGSINHPVDRDPICGFSGVITSNICPVC
                     GRNEDESDIKFERIRRITGYLVGTVDRFNNAKKAEVRDRVKHR"
     misc_feature    145689..148037
                     /locus_tag="CDBI1_00610"
                     /note="anaerobic ribonucleoside triphosphate reductase;
                     Provisional; Region: PRK07111"
                     /db_xref="CDD:235937"
     misc_feature    145698..145982
                     /locus_tag="CDBI1_00610"
                     /note="ATP cone domain; Region: ATP-cone; pfam03477"
                     /db_xref="CDD:217585"
     misc_feature    146064..147977
                     /locus_tag="CDBI1_00610"
                     /note="Class III ribonucleotide reductase; Region:
                     RNR_III; cd01675"
                     /db_xref="CDD:153084"
     misc_feature    order(146196..146198,146202..146207,146298..146312,
                     146322..146324,146331..146336,146343..146345,
                     146439..146441,147555..147566,147573..147575)
                     /locus_tag="CDBI1_00610"
                     /note="effector binding site; other site"
                     /db_xref="CDD:153084"
     misc_feature    order(146238..146240,146379..146381,147057..147062,
                     147123..147125,147549..147551,147558..147560)
                     /locus_tag="CDBI1_00610"
                     /note="active site"
                     /db_xref="CDD:153084"
     misc_feature    order(147855..147857,147864..147866,147897..147899,
                     147906..147908)
                     /locus_tag="CDBI1_00610"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:153084"
     misc_feature    147954..147968
                     /locus_tag="CDBI1_00610"
                     /note="glycine loop; other site"
                     /db_xref="CDD:153084"
     gene            148062..148601
                     /locus_tag="CDBI1_00615"
                     /db_xref="GeneID:12215774"
     CDS             148062..148601
                     /locus_tag="CDBI1_00615"
                     /note="COG0602 Organic radical activating enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="YP_006197291.1"
                     /db_xref="GI:384359439"
                     /db_xref="GeneID:12215774"
                     /translation="MKIRMSSTISYDSIVDGPGLRMVIWTQGCIHNCKECHNPQTHDL
                     CGGFYMDTEEIINKVKSLKLQKGITLSGGEPFLQPEPLEEIAREAKINGLDVWSYTGF
                     TFEQLLDKKNRAYFKNLNLLKQIDILVDGKFIAEKKDISLKFRGSSNQRIIDVQKSLK
                     YKKVFLVEQYMKDDLSIAE"
     misc_feature    148104..148520
                     /locus_tag="CDBI1_00615"
                     /note="4Fe-4S single cluster domain; Region: Fer4_12;
                     pfam13353"
                     /db_xref="CDD:222066"
     misc_feature    148137..>148562
                     /locus_tag="CDBI1_00615"
                     /note="Radical SAM superfamily. Enzymes of this family
                     generate radicals by combining a 4Fe-4S cluster and
                     S-adenosylmethionine (SAM) in close proximity. They are
                     characterized by a conserved CxxxCxxC motif, which
                     coordinates the conserved iron-sulfur cluster; Region:
                     Radical_SAM; cd01335"
                     /db_xref="CDD:100105"
     misc_feature    order(148146..148148,148152..148154,148158..148160,
                     148164..148172,148272..148274,148278..148283,
                     148353..148361,148443..148445)
                     /locus_tag="CDBI1_00615"
                     /note="FeS/SAM binding site; other site"
                     /db_xref="CDD:100105"
     gene            149379..150891
                     /locus_tag="CDBI1_r18396"
                     /db_xref="GeneID:12215775"
     rRNA            149379..150891
                     /locus_tag="CDBI1_r18396"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:12215775"
     gene            150938..151013
                     /locus_tag="CDBI1_t18320"
                     /db_xref="GeneID:12215776"
     tRNA            150938..151013
                     /locus_tag="CDBI1_t18320"
                     /product="tRNA-Ala"
                     /db_xref="GeneID:12215776"
     misc_feature    151313..154134
                     /note="potential RNA of insufficient length (23S ribosomal
                     RNA)"
     gene            154385..154501
                     /locus_tag="CDBI1_r18374"
                     /db_xref="GeneID:12215777"
     rRNA            154385..154501
                     /locus_tag="CDBI1_r18374"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:12215777"
     gene            154507..154595
                     /locus_tag="CDBI1_t18322"
                     /db_xref="GeneID:12215778"
     tRNA            154507..154595
                     /locus_tag="CDBI1_t18322"
                     /product="tRNA-Leu"
                     /db_xref="GeneID:12215778"
     gene            154607..154683
                     /locus_tag="CDBI1_t18324"
                     /db_xref="GeneID:12215779"
     tRNA            154607..154683
                     /locus_tag="CDBI1_t18324"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12215779"
     gene            154792..156304
                     /locus_tag="CDBI1_r18398"
                     /db_xref="GeneID:12215780"
     rRNA            154792..156304
                     /locus_tag="CDBI1_r18398"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:12215780"
     gene            156351..156426
                     /locus_tag="CDBI1_t18326"
                     /db_xref="GeneID:12215781"
     tRNA            156351..156426
                     /locus_tag="CDBI1_t18326"
                     /product="tRNA-Ala"
                     /db_xref="GeneID:12215781"
     misc_feature    156828..159649
                     /note="potential RNA of insufficient length (23S ribosomal
                     RNA)"
     gene            159826..159942
                     /locus_tag="CDBI1_r18376"
                     /db_xref="GeneID:12215782"
     rRNA            159826..159942
                     /locus_tag="CDBI1_r18376"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:12215782"
     gene            159950..160024
                     /locus_tag="CDBI1_t18328"
                     /db_xref="GeneID:12215783"
     tRNA            159950..160024
                     /locus_tag="CDBI1_t18328"
                     /product="tRNA-Asn"
                     /db_xref="GeneID:12215783"
     gene            160030..160115
                     /locus_tag="CDBI1_t18330"
                     /db_xref="GeneID:12215784"
     tRNA            160030..160115
                     /locus_tag="CDBI1_t18330"
                     /product="tRNA-Leu"
                     /db_xref="GeneID:12215784"
     gene            160131..160206
                     /locus_tag="CDBI1_t18332"
                     /db_xref="GeneID:12215785"
     tRNA            160131..160206
                     /locus_tag="CDBI1_t18332"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12215785"
     gene            160214..160288
                     /locus_tag="CDBI1_t18334"
                     /db_xref="GeneID:12215786"
     tRNA            160214..160288
                     /locus_tag="CDBI1_t18334"
                     /product="tRNA-Glu"
                     /db_xref="GeneID:12215786"
     gene            160303..160376
                     /locus_tag="CDBI1_t18336"
                     /db_xref="GeneID:12215787"
     tRNA            160303..160376
                     /locus_tag="CDBI1_t18336"
                     /product="tRNA-Gly"
                     /db_xref="GeneID:12215787"
     gene            160382..160457
                     /locus_tag="CDBI1_t18338"
                     /db_xref="GeneID:12215788"
     tRNA            160382..160457
                     /locus_tag="CDBI1_t18338"
                     /product="tRNA-Val"
                     /db_xref="GeneID:12215788"
     gene            160463..160539
                     /locus_tag="CDBI1_t18340"
                     /db_xref="GeneID:12215789"
     tRNA            160463..160539
                     /locus_tag="CDBI1_t18340"
                     /product="tRNA-Asp"
                     /db_xref="GeneID:12215789"
     gene            160550..160624
                     /locus_tag="CDBI1_t18342"
                     /db_xref="GeneID:12215790"
     tRNA            160550..160624
                     /locus_tag="CDBI1_t18342"
                     /product="tRNA-Gly"
                     /db_xref="GeneID:12215790"
     gene            160634..160707
                     /locus_tag="CDBI1_t18344"
                     /db_xref="GeneID:12215791"
     tRNA            160634..160707
                     /locus_tag="CDBI1_t18344"
                     /product="tRNA-Arg"
                     /db_xref="GeneID:12215791"
     gene            161683..162522
                     /locus_tag="CDBI1_00620"
                     /db_xref="GeneID:12215792"
     CDS             161683..162522
                     /locus_tag="CDBI1_00620"
                     /note="COG1624 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197292.1"
                     /db_xref="GI:384359440"
                     /db_xref="GeneID:12215792"
                     /translation="MLDINSFLNGFFNIILRMSIYDLIDISIVAYIFYKIFMFIKDTR
                     AEQVFKGIIFLLLATQLSNTFKLHTVYWISLKALDYGVIAALIIFQPEFRAGLEHIGR
                     AKFNLFGKNVNTSEETLNRNIEEIVEALYSLSRQKIGALIIMERETRISDIINTGTII
                     DAEISRQLLINIFIPNTPLHDGAVVIRDSKVKAAACFLPLTESKDLSKDLGTRHRAGI
                     GVSEVSDCITLIVSEETGGVSIAKAGKLYRDISRERMMNILRSNLKTNTETRSFFKGG
                     IFK"
     misc_feature    161746..162444
                     /locus_tag="CDBI1_00620"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG1624"
                     /db_xref="CDD:224539"
     misc_feature    162058..162423
                     /locus_tag="CDBI1_00620"
                     /note="DisA bacterial checkpoint controller
                     nucleotide-binding; Region: DisA_N; pfam02457"
                     /db_xref="CDD:190315"
     gene            162519..163700
                     /locus_tag="CDBI1_00625"
                     /db_xref="GeneID:12215793"
     CDS             162519..163700
                     /locus_tag="CDBI1_00625"
                     /note="COG4856 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197293.1"
                     /db_xref="GI:384359441"
                     /db_xref="GeneID:12215793"
                     /translation="MINRLKNNTKIKIISFLSAIALWMYVMAVVDPEETKGFEDIPVS
                     ISNMSDLKDKNLVIYPDEKLTADVYIKGSLSKVQSVKKEDIHVYGTIEDPIQGQKEVY
                     LKANIPQGVTLEFKHDVLVVNLEKNIKEKRDIKVEVSGNSKRNINKIELSKEFVDVSG
                     PRTLVKEVKSVRANLDVGNETDDFSKKLQLIPLNSDGTKVEGVTLSSSFVTAKIELLK
                     EKIVPIRVSLNDNKDNDVLKNYKLSKEQVTIKGKKEDIDKISYIKTKPIDLADLANGE
                     EKEVSLEIPEGITLEDSSITIKLNDTKQLSAEFLYNAGDIELRNIPTNIDNPNVISDV
                     DIKVVVESTEDLSKLNKKDISLYIDLSQGPEEDSKYKIKYETTYQFKKINIEPNIVEV
                     E"
     misc_feature    162519..163601
                     /locus_tag="CDBI1_00625"
                     /note="Uncharacterized protein conserved in bacteria
                     [Function unknown]; Region: COG4856"
                     /db_xref="CDD:227193"
     misc_feature    <163245..163415
                     /locus_tag="CDBI1_00625"
                     /note="YbbR-like protein; Region: YbbR; pfam07949"
                     /db_xref="CDD:219657"
     gene            164004..164906
                     /locus_tag="CDBI1_00630"
                     /db_xref="GeneID:12215794"
     CDS             164004..164906
                     /locus_tag="CDBI1_00630"
                     /EC_number="2.3.1.19"
                     /note="COG0280 Phosphotransacetylase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate butyryltransferase"
                     /protein_id="YP_006197294.1"
                     /db_xref="GI:384359442"
                     /db_xref="GeneID:12215794"
                     /translation="MRSFEEVIKFAKERGPKTISVACCQDKEVLMAVEMARKEKIANA
                     ILVGDIEKTKEIAKSIDMDIENYELIDIKDLAEASLKSVELVSQGKADMVMKGLVDTS
                     IILKAVLNKEVGLRTGNVLSHVAVFDVEGYDRLFFVTDAAMNLAPDTNTKKQIIENAC
                     TVAHSLDISEPKVAAICAKEKVNPKMKDTVEAKELEEMYERGEIKGCMVGGPFAIDNA
                     VSLEAAKHKGINHPVAGRADILLAPDIEGGNILYKALVFFSKSKNAGVIVGAKAPIIL
                     TSRADSEETKLNSIALGVLMAAKA"
     misc_feature    164004..164903
                     /locus_tag="CDBI1_00630"
                     /note="phosphate butyryltransferase; Validated; Region:
                     PRK05805"
                     /db_xref="CDD:180267"
     gene            164928..166007
                     /locus_tag="CDBI1_00635"
                     /db_xref="GeneID:12215795"
     CDS             164928..166007
                     /locus_tag="CDBI1_00635"
                     /EC_number="2.7.2.7"
                     /note="COG3426 Butyrate kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate kinase"
                     /protein_id="YP_006197295.1"
                     /db_xref="GI:384359443"
                     /db_xref="GeneID:12215795"
                     /translation="MSKIFKILTINPGSTSTKIAVFDNEDLVFEKTLRHSSEEIGKYE
                     KVSDQFEFRKQVIEEALKEGGVKTSELDAVVGRGGLLKPIKGGTYSVSAAMIEDLKVG
                     VLGEHASNLGGIIAKQIGEEVNVPSYIVDPVVVDELEDVARISGMPEISRASVVHALN
                     QKAIARRYAREINKKYEDINLIVAHMGGGVSVGAHKNGKIVDVANALDGEGPFSPERS
                     GGLPVGALVKMCFSGKYTQDEIKKKIKGNGGLVAYLNTNDAREVEERIEAGDEKAKLV
                     YEAMAYQISKEIGASAAVLKGDVKAILLTGGIAYSKMFTEMIADRVKFIADVKVYPGE
                     DEMIALAQGGLRVLTGEEEAQVYDN"
     misc_feature    164949..165545
                     /locus_tag="CDBI1_00635"
                     /note="Nucleotide-Binding Domain of the sugar
                     kinase/HSP70/actin superfamily; Region:
                     NBD_sugar-kinase_HSP70_actin; cd00012"
                     /db_xref="CDD:212657"
     misc_feature    order(164958..164969,164973..164975,164979..164981,
                     165393..165395,165480..165491)
                     /locus_tag="CDBI1_00635"
                     /note="nucleotide binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:212657"
     misc_feature    <165417..165851
                     /locus_tag="CDBI1_00635"
                     /note="Acetokinase family; Region: Acetate_kinase;
                     cl17229"
                     /db_xref="CDD:247783"
     gene            165997..166674
                     /locus_tag="CDBI1_00640"
                     /db_xref="GeneID:12215796"
     CDS             165997..166674
                     /locus_tag="CDBI1_00640"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="YP_006197296.1"
                     /db_xref="GI:384359444"
                     /db_xref="GeneID:12215796"
                     /translation="MITNDKRIRIITGHYGSGKSEFAMNYVVKLRDMVSGKVAIADLD
                     VVNVYFRTREKKELMKSLGIQPIDSSINAPTLDLPAVSAEVMSPMVDHSYNSVIDLGG
                     DNVGARVIGRFSHLLKEGDYDMLFVINANREKTQTSEEVIQYIKEIEKSSKLKVTGLI
                     NNTHLIRFTTIDDVLRGQKVAKEVSEKCNIPIRYVACLENLVEQLPKDLEGEIFPIKL
                     YMREDWM"
     gene            166717..166932
                     /locus_tag="CDBI1_00645"
                     /db_xref="GeneID:12215797"
     CDS             166717..166932
                     /locus_tag="CDBI1_00645"
                     /note="COG1146 Ferredoxin"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="YP_006197297.1"
                     /db_xref="GI:384359445"
                     /db_xref="GeneID:12215797"
                     /translation="MAKGKVSFNQERCKGCGLCVEACPVKIIQLDSNVINKKGYNPAT
                     VFEMEKCIGCASCATMCPDVVITVERD"
     misc_feature    <166750..>166902
                     /locus_tag="CDBI1_00645"
                     /note="The HCP family of iron-sulfur proteins includes
                     hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
                     and carbon monoxide dehydrogenase (CODH), all of which
                     contain [Fe4-S4] metal clusters at their active sites.
                     These proteins have a conserved...; Region: HCP_like;
                     cl14655"
                     /db_xref="CDD:246686"
     misc_feature    166753..166902
                     /locus_tag="CDBI1_00645"
                     /note="4Fe-4S dicluster domain; Region: Fer4_7; pfam12838"
                     /db_xref="CDD:221801"
     gene            166961..168040
                     /locus_tag="CDBI1_00650"
                     /db_xref="GeneID:12215798"
     CDS             166961..168040
                     /locus_tag="CDBI1_00650"
                     /EC_number="1.2.7.7"
                     /note="'COG0674 Pyruvate:ferredoxin oxidoreductase and
                     related 2-oxoacid:ferredoxin oxidoreductases, alpha
                     subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="2-ketoisovalerate ferredoxin reductase"
                     /protein_id="YP_006197298.1"
                     /db_xref="GI:384359446"
                     /db_xref="GeneID:12215798"
                     /translation="MAKILMKGNEAFGKAAIEAGCKYFFGYPITPQSELPEYLSRELP
                     KIGGAFVQAESEVSAINMVYGGAGAGARVMTSSSSPGVALKQEGITYAVGAEVPCVVL
                     NVMRGGPGLGSIQPSQADYFMSTRGGGNGDYRTPVFAPATVQEAVDMIMEAFDVADYY
                     RSPVMVVADGMIGQMMEPVEFRAPEKKRELPPKDWATVGTKGKRKPNVINSLYLEPEV
                     LEDHCWHLQEKFDAMEKNEVQYEMYKTEDAEFVFAAYGTTSRVVKSAIDILREEGIKA
                     GLIRPKVLWPFPFEAFNQIPNARNILTVEMSMGQMVEDVKMAVEGKLPVYFHGRPGGM
                     TPTPAEIVEKAKKIIAGELVAGGAR"
     misc_feature    166961..168016
                     /locus_tag="CDBI1_00650"
                     /note="2-ketoisovalerate ferredoxin reductase; Validated;
                     Region: PRK07119"
                     /db_xref="CDD:235942"
     misc_feature    166982..167470
                     /locus_tag="CDBI1_00650"
                     /note="Pyrimidine (PYR) binding domain of pyruvate
                     ferredoxin oxidoreductase (PFOR), indolepyruvate
                     ferredoxin oxidoreductase alpha subunit (IOR-alpha), and
                     related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like;
                     cd07034"
                     /db_xref="CDD:132917"
     misc_feature    order(167027..167032,167048..167050,167060..167062,
                     167069..167071,167111..167122,167141..167146,
                     167150..167158,167165..167167,167171..167173,
                     167222..167224,167231..167233,167243..167245,
                     167282..167287,167336..167341)
                     /locus_tag="CDBI1_00650"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:132917"
     misc_feature    order(167027..167032,167039..167044,167048..167050,
                     167066..167071,167111..167122,167141..167146,
                     167150..167158,167165..167167,167171..167173,
                     167222..167224,167231..167233)
                     /locus_tag="CDBI1_00650"
                     /note="PYR/PP interface [polypeptide binding]; other site"
                     /db_xref="CDD:132917"
     misc_feature    order(167042..167044,167126..167128)
                     /locus_tag="CDBI1_00650"
                     /note="TPP binding site [chemical binding]; other site"
                     /db_xref="CDD:132917"
     misc_feature    order(167048..167050,167276..167278)
                     /locus_tag="CDBI1_00650"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:132917"
     misc_feature    167720..>167875
                     /locus_tag="CDBI1_00650"
                     /note="Transketolase, C-terminal domain; Region:
                     Transketolase_C; pfam02780"
                     /db_xref="CDD:217227"
     gene            168040..168792
                     /locus_tag="CDBI1_00655"
                     /db_xref="GeneID:12215799"
     CDS             168040..168792
                     /locus_tag="CDBI1_00655"
                     /note="'COG1013 Pyruvate:ferredoxin oxidoreductase and
                     related 2-oxoacid:ferredoxin oxidoreductases, beta
                     subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="subunit of oxidoreductase"
                     /protein_id="YP_006197299.1"
                     /db_xref="GI:384359447"
                     /db_xref="GeneID:12215799"
                     /translation="MAVVFKKTEGLQDTQTHYCPGCTHGIIHRLVGEVLEELGVLGDA
                     VGVVPVGCSVLGYKYFNCDTQEAAHGRAPAAATGIKRVHPENTVFTYQGDGDLASIGT
                     AEIVHAAARGEKITTIFVNNTTYGMTGGQMAPTTLVGQRATTAQSGRNAETQGYPIRV
                     SEMLATLTGAVFVERVAVDTPAHVRQAKKAIKKAFQVQQAGLGFGIVEVLSTCPTNWG
                     LAPNDALQWLRDNMIPYYPLGNFKNVEVEEVK"
     misc_feature    168049..168789
                     /locus_tag="CDBI1_00655"
                     /note="Pyruvate:ferredoxin oxidoreductase and related
                     2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy
                     production and conversion]; Region: PorB; COG1013"
                     /db_xref="CDD:223945"
     misc_feature    168091..168687
                     /locus_tag="CDBI1_00655"
                     /note="Thiamine pyrophosphate (TPP) enzyme family,
                     TPP-binding module; found in many key metabolic enzymes
                     which use TPP (also known as thiamine diphosphate) as a
                     cofactor. These enzymes include, among others, the E1
                     components of the pyruvate, the acetoin and...; Region:
                     TPP_enzymes; cl01629"
                     /db_xref="CDD:242611"
     misc_feature    order(168244..168246,168316..168327,168403..168405,
                     168409..168411)
                     /locus_tag="CDBI1_00655"
                     /note="TPP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238318"
     gene            168793..169350
                     /locus_tag="CDBI1_00660"
                     /db_xref="GeneID:12215800"
     CDS             168793..169350
                     /locus_tag="CDBI1_00660"
                     /note="'COG1014 Pyruvate:ferredoxin oxidoreductase and
                     related 2-oxoacid:ferredoxin oxidoreductases, gamma
                     subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="subunit of oxidoreductase"
                     /protein_id="YP_006197300.1"
                     /db_xref="GI:384359448"
                     /db_xref="GeneID:12215800"
                     /translation="MSTARVICAGFGGQGVMSMGQLLTYAGMLEGKEVSWLPSYGPEM
                     RGGTANCAVTVSNEPVGSPLITDDATAAILLNIPAFEKFKDDVIPGGKIIVNSSLIKE
                     KVDRTDVDVYYIPANELAAELGNDKVANMIMLGAYLKVSDTVDIESVLEAFKKVFGPR
                     KEKFVPLNREALQKGMDATCSKATN"
     misc_feature    168817..169323
                     /locus_tag="CDBI1_00660"
                     /note="2-oxoglutarate ferredoxin oxidoreductase subunit
                     gamma; Validated; Region: PRK08537"
                     /db_xref="CDD:181462"
     misc_feature    168826..169317
                     /locus_tag="CDBI1_00660"
                     /note="Pyruvate ferredoxin/flavodoxin oxidoreductase;
                     Region: POR; pfam01558"
                     /db_xref="CDD:216571"
     gene            169520..170866
                     /locus_tag="CDBI1_00665"
                     /db_xref="GeneID:12215801"
     CDS             169520..170866
                     /locus_tag="CDBI1_00665"
                     /note="COG1109 Phosphomannomutase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="YP_006197301.1"
                     /db_xref="GI:384359449"
                     /db_xref="GeneID:12215801"
                     /translation="MRKYFGTDGVRGVANTELTCDLAYKLGRAGGFVLAQGDHRVKVV
                     VGKDTRISGDMLEASLIAGLMSVGCDVITVGIIPTPAVAYLTRKYGADCGVVISASHN
                     PVEYNGIKFFNKNGYKLDDEIELKIEEYIDDIDKIDCLPIGENVGRKLHEHCAQRDYV
                     DYLKSIISTDFKGLKVVLDCANGASYKVAPIVFDELGASVISINSSPDGNNINYKCGS
                     THPEQLQRAVLEHNADLGLAYDGDADRLIAVNEKGQIVDGDHIMILSALNLKKNNKLA
                     QDTLVVTVMSNIGLTIAAKENGINLSTTAVGDRYVLEDMVKNGYNLGGEQSGHMIFLD
                     YNTTGDGVLSSLILANIILQEKKPLSEIASIMSQYPQVLVNATIKNENKNKYMEYPEI
                     KTEIERIESILNGNGRVLIRPSGTEPLVRVMLEGKEEGQIKELATNLANLIQEKLS"
     misc_feature    169526..170863
                     /locus_tag="CDBI1_00665"
                     /note="phosphoglucosamine mutase; Provisional; Region:
                     glmM; PRK14316"
                     /db_xref="CDD:237670"
     misc_feature    169529..170839
                     /locus_tag="CDBI1_00665"
                     /note="GlmM is a bacterial phosphoglucosamine mutase
                     (PNGM) that belongs to the alpha-D-phosphohexomutase
                     superfamily. It is required for the interconversion of
                     glucosamine-6-phosphate and glucosamine-1-phosphate in the
                     biosynthetic pathway of...; Region: GlmM; cd05802"
                     /db_xref="CDD:100095"
     misc_feature    order(169535..169537,169541..169543,169550..169552,
                     169817..169825,169847..169849,170237..170239,
                     170243..170245,170249..170254,170372..170374,
                     170435..170443,170492..170494,170498..170500,
                     170504..170506,170753..170755,170759..170767,
                     170780..170782)
                     /locus_tag="CDBI1_00665"
                     /note="active site"
                     /db_xref="CDD:100095"
     misc_feature    order(169541..169543,169817..169819,170252..170254,
                     170372..170374,170435..170437,170441..170443,
                     170492..170494,170498..170500,170504..170506,
                     170753..170755,170759..170767,170780..170782)
                     /locus_tag="CDBI1_00665"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:100095"
     misc_feature    order(169817..169819,170237..170239,170243..170245,
                     170249..170251)
                     /locus_tag="CDBI1_00665"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:100095"
     gene            171133..172965
                     /locus_tag="CDBI1_00670"
                     /db_xref="GeneID:12215802"
     CDS             171133..172965
                     /locus_tag="CDBI1_00670"
                     /note="'COG0449 Glucosamine 6-phosphate synthetase,
                     contains amidotransferase and phosphosugar isomerase
                     domains'"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine--fructose-6-phosphate
                     aminotransferase, isomerizing"
                     /protein_id="YP_006197302.1"
                     /db_xref="GI:384359450"
                     /db_xref="GeneID:12215802"
                     /translation="MCGIVGYLGSRKAAEVIVEGLSKLEYRGYDSAGVAVNSSNEEEL
                     NIRKFKGRLSVLAEDLEKNPIDGNLGIGHTRWATHGEPSDVNSHPHFNQAKTIAVVHN
                     GIIENYMEIKEELISEGVKFESQTDTEVIAHLVDKYYEGNLLDAVYKTISKLRGAYAL
                     GVICKEHGNELVAVRKDSPLVVGVGEGENFIASDIPALLKYTRDVYFLENGEVVHLKD
                     ENVTVYDSNRNLVEKEVFHVTWDVEAASKGGYDYFMSKEIHEQPTGVRETLERRLDDN
                     GNIILDSINISKEDLEKINKVYIVACGTAYNAGLLGKYAIEKFVNIPVITDIASEFRY
                     SDPFVDENSLVILVSQSGETADTLAVLRDSKAKGARILSITNVVGSSIARESDDVFYT
                     WAGPEVAVASTKAYTTQITSLYMIALDFAIKKGTITREFYDSMISKMKEIPSKIQEIL
                     DNEEYIKEVAKTVVSSEHAFYLGRGIDYSLAMEGSLKLKEISYIHAEAFAAGELKHGT
                     IALIEKGTPVIAIATQEKLFEKMVSNMEEVRARGAYVVAIAQSHNKDVEKAADKIIYI
                     PNSDDILSPILAVVPMQLLAYHVSVLRGCDVDKPRNLAKSVTVE"
     misc_feature    171133..172962
                     /locus_tag="CDBI1_00670"
                     /note="glucosamine--fructose-6-phosphate aminotransferase;
                     Reviewed; Region: PRK00331"
                     /db_xref="CDD:234729"
     misc_feature    171136..171780
                     /locus_tag="CDBI1_00670"
                     /note="Glutamine amidotransferases class-II
                     (Gn-AT)_GFAT-type. This domain is found at the N-terminus
                     of glucosamine-6P synthase (GlmS, or GFAT in humans).  The
                     glutaminase domain catalyzes amide nitrogen transfer from
                     glutamine to the appropriate substrate. In...; Region:
                     GFAT; cd00714"
                     /db_xref="CDD:238366"
     misc_feature    order(171136..171138,171211..171213,171355..171360,
                     171364..171369,171394..171396,171436..171441,
                     171511..171516)
                     /locus_tag="CDBI1_00670"
                     /note="glutaminase active site [active]"
                     /db_xref="CDD:238366"
     misc_feature    172018..172395
                     /locus_tag="CDBI1_00670"
                     /note="SIS (Sugar ISomerase) domain repeat 1 found in
                     Glucosamine 6-phosphate synthase (GlmS) and
                     Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
                     is found in many phosphosugar isomerases and phosphosugar
                     binding proteins. GlmS contains a N-terminal...; Region:
                     SIS_GlmS_GlmD_1; cd05008"
                     /db_xref="CDD:240141"
     misc_feature    order(172036..172041,172069..172074,172081..172086,
                     172105..172107,172111..172113,172123..172125,
                     172132..172134,172198..172200)
                     /locus_tag="CDBI1_00670"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:240141"
     misc_feature    order(172042..172047,172177..172185)
                     /locus_tag="CDBI1_00670"
                     /note="active site"
                     /db_xref="CDD:240141"
     misc_feature    172492..172956
                     /locus_tag="CDBI1_00670"
                     /note="SIS (Sugar ISomerase) domain repeat 2 found in
                     Glucosamine 6-phosphate synthase (GlmS) and
                     Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
                     is found in many phosphosugar isomerases and phosphosugar
                     binding proteins. GlmS contains a N-terminal...; Region:
                     SIS_GlmS_GlmD_2; cd05009"
                     /db_xref="CDD:240142"
     misc_feature    order(172555..172557,172597..172599,172609..172611,
                     172615..172617,172621..172623,172627..172629,
                     172639..172641,172645..172653,172657..172668,
                     172717..172722,172732..172734,172738..172743,
                     172933..172938,172951..172953)
                     /locus_tag="CDBI1_00670"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:240142"
     misc_feature    order(172591..172593,172600..172602)
                     /locus_tag="CDBI1_00670"
                     /note="active site"
                     /db_xref="CDD:240142"
     gene            173418..174713
                     /locus_tag="CDBI1_00675"
                     /db_xref="GeneID:12215803"
     CDS             173418..174713
                     /locus_tag="CDBI1_00675"
                     /note="COG2897 Rhodanese-related sulfurtransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase"
                     /protein_id="YP_006197303.1"
                     /db_xref="GI:384359451"
                     /db_xref="GeneID:12215803"
                     /translation="MTNDFKKEKKEDYFVNLKAISTEVLQEKMQDNAWVIVDTRLNDA
                     YNGWKLDGVKRGGHIKRAVDFSANWLNVYSDRKDEVLEQALKTKRIDLDKNIVLYDAN
                     GKDALVVADYLSKKGYKYLYKYDIKQWADDENLPMERYKNYQMIVPAFIIKDILDGKI
                     PETFEDSKNIKMIEASWGEESYTKGHIPTSVHVNTDIIEPPPTWMLDNDDNLTKFALD
                     YGLTKDDTVIVSSITPMASYRLAVILRYIGVKDVRVLNGGTNSWLSAGYELEFISNPK
                     HSCTNFGADIPVNSQLVVTTSELRQKLKEKNKFILVDNRTWDEHIGKVSGYTYYDKKG
                     RIPGALYGHSGSNSVSLEEYRNIDNTMRNKSEILEMWDKENIDVNKQLIFMCGSGWRA
                     AEVLTYANVIGVENTSLYSDGWMGWSLDNSNLIEVGEHK"
     misc_feature    173478..>173747
                     /locus_tag="CDBI1_00675"
                     /note="Rhodanese-like domain; Region: Rhodanese;
                     pfam00581"
                     /db_xref="CDD:216005"
     misc_feature    173715..173717
                     /locus_tag="CDBI1_00675"
                     /note="active site residue [active]"
                     /db_xref="CDD:238089"
     misc_feature    173820..174704
                     /locus_tag="CDBI1_00675"
                     /note="Rhodanese-related sulfurtransferase [Inorganic ion
                     transport and metabolism]; Region: SseA; COG2897"
                     /db_xref="CDD:225450"
     misc_feature    173913..174215
                     /locus_tag="CDBI1_00675"
                     /note="Rhodanese Homology Domain (RHOD); an alpha beta
                     fold domain found duplicated in the rhodanese protein. The
                     cysteine containing enzymatically active version of the
                     domain is also found in the Cdc25 class of protein
                     phosphatases and a variety of proteins...; Region: RHOD;
                     cl00125"
                     /db_xref="CDD:241626"
     misc_feature    174105..174107
                     /locus_tag="CDBI1_00675"
                     /note="active site residue [active]"
                     /db_xref="CDD:238089"
     misc_feature    174297..174671
                     /locus_tag="CDBI1_00675"
                     /note="Thiosulfate sulfurtransferase (TST), C-terminal,
                     catalytic domain. TST contains 2 copies of the Rhodanese
                     Homology Domain; this is the second repeat. Only the
                     second repeat contains the catalytically active Cys
                     residue; Region: TST_Repeat_2; cd01449"
                     /db_xref="CDD:238726"
     misc_feature    174573..174575
                     /locus_tag="CDBI1_00675"
                     /note="active site residue [active]"
                     /db_xref="CDD:238726"
     gene            175190..175927
                     /locus_tag="CDBI1_00680"
                     /db_xref="GeneID:12215804"
     CDS             175190..175927
                     /locus_tag="CDBI1_00680"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197304.1"
                     /db_xref="GI:384359452"
                     /db_xref="GeneID:12215804"
                     /translation="MKKVKLAISFFILMIIGMTISYADTSINTRYNRLSKALEISEAN
                     FKFYNVKINSVINHNLSNKEFHNIFIEIINNLKLDKKGINWNQKGSGDKIQLCATIKG
                     SDKEISIKGINKNNKESYIVVDILDNKVYKHKEVIYSNVENVLNKYSSQVDVSACIVG
                     EYTKRLQNNKYDDILQKILYNMSAKQIDEVKDVNFLSITAYSKVLNDYELEYLGEKIN
                     LNIGIKYNEDDGKTLIYIATPIIKLDY"
     misc_feature    175415..175924
                     /locus_tag="CDBI1_00680"
                     /note="Protein of unknown function (DUF1779); Region:
                     DUF1779; pfam08680"
                     /db_xref="CDD:219967"
     gene            175948..177201
                     /locus_tag="CDBI1_00685"
                     /db_xref="GeneID:12215805"
     CDS             175948..177201
                     /locus_tag="CDBI1_00685"
                     /EC_number="2.5.1.7"
                     /note="COG0766 UDP-N-acetylglucosamine enolpyruvyl
                     transferase"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="YP_006197305.1"
                     /db_xref="GI:384359453"
                     /db_xref="GeneID:12215805"
                     /translation="MAKIIVKKSNPLKGSVKIDGAKNAVLPIIAATLLANGKSTLNGV
                     PNLRDVHVISDLLRHVGAEVEYKENTLTVDASNIKTCEAPYELVRKMRASFLVMGPLL
                     ARFNSTKISMPGGCAIGTRPIDLHLKGFKALGAKIEMDHGFVEAATEKLVGNKLYLDF
                     PSVGATENIMMAASLAEGTTIIENAAEEPEIVDLANFLNEMGADVKGAGTNTIKIKGV
                     KELKGAEHNVIPDRIEAATYMVAAAMTKGDITVENVLMEHLKPVVAKLREAGCEITEM
                     DNSVRVVGPKVLKPIDIKTLPHPGFPTDVQAQFMAMLTVANGTGVVIETVFENRFMHV
                     AEFNRMGANIKIDGRSAVVNGVDELHGAAVNATDLRAGAALILCGLIAEGETQIGEIY
                     HIQRGYVDIDKKITALGGQIEIVED"
     misc_feature    175948..177186
                     /locus_tag="CDBI1_00685"
                     /note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase;
                     Region: murA; TIGR01072"
                     /db_xref="CDD:162190"
     misc_feature    175981..177171
                     /locus_tag="CDBI1_00685"
                     /note="UDP-N-acetylglucosamine enolpyruvyl transferase
                     catalyzes enolpyruvyl transfer as part of the first step
                     in the biosynthesis of peptidoglycan, a component of the
                     bacterial cell wall. The reaction is phosphoenolpyruvate +
                     UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555"
                     /db_xref="CDD:238796"
     misc_feature    order(175999..176010,176629..176640)
                     /locus_tag="CDBI1_00685"
                     /note="hinge; other site"
                     /db_xref="CDD:238796"
     misc_feature    order(176014..176016,176221..176223,176233..176235,
                     176308..176325,176425..176427,176434..176439,
                     176857..176859)
                     /locus_tag="CDBI1_00685"
                     /note="active site"
                     /db_xref="CDD:238796"
     gene            177288..178352
                     /locus_tag="CDBI1_00690"
                     /db_xref="GeneID:12215806"
     CDS             177288..178352
                     /locus_tag="CDBI1_00690"
                     /note="COG2385 Sporulation protein and related proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein D"
                     /protein_id="YP_006197306.1"
                     /db_xref="GI:384359454"
                     /db_xref="GeneID:12215806"
                     /translation="MKNPLVVLLGFVTCSVLVPSLITLVSYKNVELTEKPESPVSINK
                     TIKKSDIEDKGNKEEKSTVSYETVNKKAPIINVYNHITGKTEKMDMENYLCGVLAGEM
                     SSEFDIEALKAQSVAARTYVVYKQEHGKSSKHKNAVVCTDYKHCQEYKSYDTLKKLNG
                     EEWIKNKYSKIQEAVRGTKGQIITYNDKAILPLYFSTSSGKTENSEEVFSAKYPYLKS
                     VESPYDKYSPKFASTLKISNTDFVKSLRRAYSTIVIDVNNLSKQVSITKRSDAGTVEK
                     IKLGNKELTGKDIRTVFKLNSANFDIKFGEGYIDFVVKGYGHGVGMSQWGAEGMAEEG
                     YKYYDILSHYYTDTKIKDIY"
     misc_feature    177510..177842
                     /locus_tag="CDBI1_00690"
                     /note="Stage II sporulation protein; Region: SpoIID;
                     pfam08486"
                     /db_xref="CDD:219860"
     misc_feature    177543..178340
                     /locus_tag="CDBI1_00690"
                     /note="SpoIID/LytB domain; Region: SpoIID_LytB; TIGR02669"
                     /db_xref="CDD:233969"
     gene            178418..179086
                     /locus_tag="CDBI1_00695"
                     /db_xref="GeneID:12215807"
     CDS             178418..179086
                     /locus_tag="CDBI1_00695"
                     /note="COG0739 Membrane proteins related to
                     metalloendopeptidases"
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall endopeptidase"
                     /protein_id="YP_006197307.1"
                     /db_xref="GI:384359455"
                     /db_xref="GeneID:12215807"
                     /translation="MKKKLLEKDGFYLSLFVCVCLLAVGGVWFTNNNVDKLASNKGIM
                     ENANKDSEEEIHLIEKDKKDAIPTATDSKQNLEKAKSKEENKSSTTKLNYIGDKVIRG
                     YSEKEPSYSKTLDVWETHKGVDISCTKGKEVKSLLNGIVVDVFNDEEYGQSVKIKSDN
                     NIVVVYSNLDKNVSVKKEQKVTEGQSLGTVGSTSQIESEEGIHVHLEAYSGEKSIDPM
                     SLIK"
     misc_feature    <178757..179071
                     /locus_tag="CDBI1_00695"
                     /note="Membrane proteins related to metalloendopeptidases
                     [Cell envelope biogenesis, outer membrane]; Region: NlpD;
                     COG0739"
                     /db_xref="CDD:223810"
     misc_feature    178775..179068
                     /locus_tag="CDBI1_00695"
                     /note="Peptidase family M23; Region: Peptidase_M23;
                     pfam01551"
                     /db_xref="CDD:216566"
     gene            179184..179444
                     /locus_tag="CDBI1_00700"
                     /db_xref="GeneID:12215808"
     CDS             179184..179444
                     /locus_tag="CDBI1_00700"
                     /note="COG2378 Predicted transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="stage III sporulation protein D"
                     /protein_id="YP_006197308.1"
                     /db_xref="GI:384359456"
                     /db_xref="GeneID:12215808"
                     /translation="MRSHIEERAIVVAKYILEKNTTVRQTAKTFGVSKSTIHKDVTER
                     LKEINPSLAKEVKNVLDKNKSERHIRGGLATKLKYEKEHKKM"
     misc_feature    179187..179432
                     /locus_tag="CDBI1_00700"
                     /note="Stage III sporulation protein D; Region: SpoIIID;
                     pfam12116"
                     /db_xref="CDD:152551"
     gene            179641..180660
                     /locus_tag="CDBI1_00705"
                     /db_xref="GeneID:12215809"
     CDS             179641..180660
                     /locus_tag="CDBI1_00705"
                     /note="COG1077 Actin-like ATPase involved in cell
                     morphogenesis"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein Mbl"
                     /protein_id="YP_006197309.1"
                     /db_xref="GI:384359457"
                     /db_xref="GeneID:12215809"
                     /translation="MAGADIGIDLGTANVLVYVSGKGIVLEEPSVVAIDKRTDSVLAV
                     GEEAKKMIGRTPGNIVAIRPLRDGVISDYDVTEKMLKSFIDKIVDKKGFGRFFMPRIM
                     VCVPTGVTEVEKRAVEDATRQAGAREVYIIEEPIAAAIGAGVDISQPNGNMIIDIGGG
                     TVDIAVISLGGAVVSESIKVGGDRFDDAIVKYMKKQHNLLIGERTAEKIKFEIGSAFK
                     REEEKYMKITGRNLITGLPSSITINSTEMLEALRECVEQIVVATHAVLEKTPPELAAD
                     IGDVGIIMTGGGSLLYGLDKIIEQRTGITVTIADEPLSCVAKGTGIALGSIDLLETGG
                     SFKRK"
     misc_feature    179641..180657
                     /locus_tag="CDBI1_00705"
                     /note="rod shape-determining protein Mbl; Provisional;
                     Region: PRK13928"
                     /db_xref="CDD:237563"
     misc_feature    179656..180624
                     /locus_tag="CDBI1_00705"
                     /note="MreB and similar proteins; Region: MreB_like;
                     cd10225"
                     /db_xref="CDD:212668"
     misc_feature    order(179665..179667,179671..179682,179842..179844,
                     180040..180042,180106..180108,180112..180123,
                     180184..180189,180259..180261,180268..180273,
                     180496..180504,180508..180513,180577..180579,
                     180586..180588)
                     /locus_tag="CDBI1_00705"
                     /note="nucleotide binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:212668"
     misc_feature    order(179665..179667,180106..180108)
                     /locus_tag="CDBI1_00705"
                     /note="Mg binding site [ion binding]; other site"
                     /db_xref="CDD:212668"
     misc_feature    order(179743..179745,179791..179793,179815..179817,
                     180085..180087,180091..180093,180151..180153,
                     180247..180249,180253..180255,180322..180324,
                     180346..180348,180355..180357,180445..180447,
                     180454..180456,180550..180552,180622..180624)
                     /locus_tag="CDBI1_00705"
                     /note="putative protofilament interaction site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:212668"
     misc_feature    order(180067..180072,180094..180096,180472..180480,
                     180553..180555,180559..180561,180568..180570)
                     /locus_tag="CDBI1_00705"
                     /note="RodZ interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212668"
     gene            180676..181104
                     /gene="fabZ"
                     /locus_tag="CDBI1_00710"
                     /db_xref="GeneID:12215810"
     CDS             180676..181104
                     /gene="fabZ"
                     /locus_tag="CDBI1_00710"
                     /EC_number="4.2.1.-"
                     /note="COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl
                     carrier protein) dehydratases"
                     /codon_start=1
                     /transl_table=11
                     /product="(3R)-hydroxymyristoyl-ACP dehydratase"
                     /protein_id="YP_006197310.1"
                     /db_xref="GI:384359458"
                     /db_xref="GeneID:12215810"
                     /translation="MLNIDEIKKLIPHRYPFLLVDKITELEVGKRAVGIKNVTVNEPF
                     FQGHFPEYPLMPGVLIVEALAQVCGVAMMSVEENKGKLGVFAGIDKVRIKREVRPGDT
                     LTMEIEMTTLRKNIAKADAKAYVGEELVCKGELMFALVEK"
     misc_feature    180706..181095
                     /gene="fabZ"
                     /locus_tag="CDBI1_00710"
                     /note="FabZ is a 17kD beta-hydroxyacyl-acyl carrier
                     protein (ACP) dehydratase that primarily catalyzes the
                     dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
                     the third step in the elongation phase of the bacterial/
                     plastid, type II, fatty-acid...; Region: FabZ; cd01288"
                     /db_xref="CDD:238615"
     gene            complement(181215..181724)
                     /locus_tag="CDBI1_00715"
                     /db_xref="GeneID:12215811"
     CDS             complement(181215..181724)
                     /locus_tag="CDBI1_00715"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197311.1"
                     /db_xref="GI:384359459"
                     /db_xref="GeneID:12215811"
                     /translation="MYLAKVNYSDDDVIQMLSSVLKTIINENTIVVCIGTDRAIGDTL
                     GPLVGTILKNSNFKYPVYGTLDNPIHALNIYESLDTIKNTHIQGNFLAIDACLGSQSN
                     IGNIQIREGPILPGKGVGKKLPQIGNYSIVGIVDKIDENNKLSFNNIRLSFILDLAET
                     IALALLVST"
     misc_feature    complement(181239..181712)
                     /locus_tag="CDBI1_00715"
                     /note="Protein of unknown function (DUF1256); Region:
                     DUF1256; cl06087"
                     /db_xref="CDD:141909"
     gene            182153..183346
                     /locus_tag="CDBI1_00720"
                     /db_xref="GeneID:12215812"
     CDS             182153..183346
                     /locus_tag="CDBI1_00720"
                     /note="COG0192 S-adenosylmethionine synthetase"
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosylmethionine synthetase"
                     /protein_id="YP_006197312.1"
                     /db_xref="GI:384359460"
                     /db_xref="GeneID:12215812"
                     /translation="MARHLFTSESVTEGHPDKICDQISDSILDALLEKDPQSRVACET
                     TVTTGLVLVAGEISTSAYVDIPKLVRETVREIGYTRAKYGFDCDTCAVITSIDEQSGD
                     IAMGVDEGLESKTGEEIEEEIEKVGAGDQGIMFGFACNETPELMPLPISLAHKLSRRL
                     TEVRKTGLVDYLRPDGKTQVTVEYEGSKAVRVHTVLISAQHCETVSNDKIREDLINHV
                     IKEVIPAELLDEETKIYINPTGRFVIGGPQGDTGLTGRKIIIDTYGGYSRHGGGAFSG
                     KDPTKVDRSAAYAARYVAKNIVAAGLADKCEIELAYAIGIARPLSIFIDTFGTGKVSE
                     EKLVELVNKHFDLRPGAIIRDLDLRKPLYKKVAAYGHFGRTDIDLPWERTDKVEQLRK
                     DALGE"
     misc_feature    182159..183334
                     /locus_tag="CDBI1_00720"
                     /note="S-adenosylmethionine synthetase; Validated; Region:
                     PRK05250"
                     /db_xref="CDD:235374"
     misc_feature    182159..182452
                     /locus_tag="CDBI1_00720"
                     /note="S-adenosylmethionine synthetase, N-terminal domain;
                     Region: S-AdoMet_synt_N; pfam00438"
                     /db_xref="CDD:201226"
     misc_feature    182525..182878
                     /locus_tag="CDBI1_00720"
                     /note="S-adenosylmethionine synthetase, central domain;
                     Region: S-AdoMet_synt_M; pfam02772"
                     /db_xref="CDD:217221"
     misc_feature    182882..183301
                     /locus_tag="CDBI1_00720"
                     /note="S-adenosylmethionine synthetase, C-terminal domain;
                     Region: S-AdoMet_synt_C; pfam02773"
                     /db_xref="CDD:111646"
     gene            183662..184759
                     /locus_tag="CDBI1_00725"
                     /db_xref="GeneID:12215813"
     CDS             183662..184759
                     /locus_tag="CDBI1_00725"
                     /note="COG3949 Uncharacterized membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197313.1"
                     /db_xref="GI:384359461"
                     /db_xref="GeneID:12215813"
                     /translation="MSGKVNIKTVISFAGAYVATVIGSGFATGQEILQFFTFYGYAGI
                     IGGIISMVLFSWFGAEVIDKGRELKLKEPIKIYQVYCGKYLGTFFEWFGPLFLFGTLV
                     IMIAGAGATLSEYYGLNPYVGRIGMAIVSLITVSLGLTRLSKILGNIGPIIIIFTLLV
                     GAISLFSNIDALSNAGNMVDSLNIKTATSNGYFSGVLYTCYNVIIVITFLTGMGASAV
                     NKKDAVWGGIVGGVALMAAAIMMNLALLSNIGNIYTKEIPALYLADKISPIIGILFSV
                     VLLLGIYTTAVPLLWSVTNRFVEDDHPKFKIITIVVSILACIGGLLPFDKLVGTLYPY
                     TGYMGILILLCMLYRRITKTEGYKENKSEIS"
     misc_feature    183707..184705
                     /locus_tag="CDBI1_00725"
                     /note="Uncharacterized membrane protein [Function
                     unknown]; Region: COG3949"
                     /db_xref="CDD:226458"
     gene            185023..187242
                     /locus_tag="CDBI1_00730"
                     /db_xref="GeneID:12215814"
     CDS             185023..187242
                     /locus_tag="CDBI1_00730"
                     /note="'COG0507 ATP-dependent exoDNAse (exonuclease V),
                     alpha subunit - helicase superfamily I member'"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="YP_006197314.1"
                     /db_xref="GI:384359462"
                     /db_xref="GeneID:12215814"
                     /translation="MEKLEGMISEIVFKNEDNGYTIAHLVNENDEIVVVGCMPTLAIG
                     ESIEVEGKWVNHKIYGTQFEVNSFMPVTPSSLEGIYVYLSSGMIHGIGEKMAKRIIDK
                     FGVDTLEVIQNSPEKLQEVEGIGSKKVKQIVKSYEEDRELRNIIIQLSPFGITPNYCL
                     KIYKKYKSSAIEVINKNPYQLAEDIRGIGFKVADSIASKIGIDKNSKDRICQGILYTL
                     NKSLSNGHTYLPEHVLIQDSEKLLELNGEIIKECVMMLVYNQKIHIEKVNNENLIYLM
                     PYYLAENGVCSQIVKLSQYEFEDLKIDIDNEINVLEEDKKIKLAEKQILAVKESVNSG
                     VLIITGGPGTGKTTTINAIIDIFENNGKSVTLAAPTGRAAKRMSETSNKEAKTIHRLL
                     EMGFSTDDDLTFFKDEEDPINSDVIIVDEVSMVDIILMYNLLRAIKLGTRVILVGDSD
                     QLPSVGAGNVLKDMINSNIINVVKLNEIFRQAQESMIIVNAHKINNGEPLYLNTKGKD
                     FFFIRKSTNEEILNEIIGLVNERLPKFYKVDKLKDIQVLSSMRKGELGVTNLNIELQK
                     YLNKKEKFKVEESFSKRLFRVGDKVMQVKNNYTKKWETEDQKESGEGIYNGDIGYVYH
                     IDKDKKTIYILFDQTKIVSYLYDELDEIDHSFCTTIHKSQGSEFPVVVLPIAWAPPML
                     LSRNLLYTAVTRAKKLVVLVGDVKYLEYMIKNNRVNQRYSNLGYKLNKFKQEGLLIE"
     misc_feature    185032..187170
                     /locus_tag="CDBI1_00730"
                     /note="helicase, putative, RecD/TraA family; Region:
                     recD_rel; TIGR01448"
                     /db_xref="CDD:233418"
     misc_feature    185974..186519
                     /locus_tag="CDBI1_00730"
                     /note="AAA domain; Region: AAA_30; pfam13604"
                     /db_xref="CDD:222258"
     misc_feature    186775..187128
                     /locus_tag="CDBI1_00730"
                     /note="Family description; Region: UvrD_C_2; pfam13538"
                     /db_xref="CDD:222209"
     gene            187245..188027
                     /locus_tag="CDBI1_00735"
                     /db_xref="GeneID:12215815"
     CDS             187245..188027
                     /locus_tag="CDBI1_00735"
                     /note="COG1040 Predicted amidophosphoribosyltransferases"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl transferase"
                     /protein_id="YP_006197315.1"
                     /db_xref="GI:384359463"
                     /db_xref="GeneID:12215815"
                     /translation="MKICNDNFIKNFKNMINKCLDFIYPENISCIICDKSIKKTNTYS
                     ICKSCFKEMNFIQDGCMKCGKPIIRHSIEKEFIEECSYCFNKDFYFDKSISCIEYNDV
                     TKKMVLGLKYNQKTFMAKYIAQIMKEKLYLENIKFDYILFVPLHKKRLNKRGFNQAQK
                     IAFNLSKIVNIPLLDCISRKKYTRMLYKLNKKERKEELKNVFVVKENVKLINNKNILL
                     IDDIFTTGLTTNEISKLLKLSGANKVFVLTLLTKANDNYIME"
     misc_feature    187422..187991
                     /locus_tag="CDBI1_00735"
                     /note="comF family protein; Region: comF; TIGR00201"
                     /db_xref="CDD:232871"
     misc_feature    187608..188000
                     /locus_tag="CDBI1_00735"
                     /note="Phosphoribosyl transferase (PRT)-type I domain;
                     Region: PRTases_typeI; cd06223"
                     /db_xref="CDD:206754"
     misc_feature    order(187674..187676,187701..187703,187902..187910,
                     187914..187928,187998..188000)
                     /locus_tag="CDBI1_00735"
                     /note="active site"
                     /db_xref="CDD:206754"
     gene            188368..190272
                     /locus_tag="CDBI1_00740"
                     /db_xref="GeneID:12215816"
     CDS             188368..190272
                     /locus_tag="CDBI1_00740"
                     /note="COG3711 Transcriptional antiterminator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="YP_006197316.1"
                     /db_xref="GI:384359464"
                     /db_xref="GeneID:12215816"
                     /translation="MNKRQENLLTTLLLKEEFINVNKIANDFECSERTIRNDCKYIDE
                     WLSTFCNAYIKRKPNIGIKFSGDGTDKILVNQKLRGEVKRVNSELHKQVEILNLLLCN
                     NKKVTLNDLSNKLYINKNIVREEISKLSVALNNYNLNVSTKKGSGIYIEGDEKDIRIM
                     LVSFLFKYIDKYRLNIDEIEYFHIVDIIIVKNIMLTIEEDMDIRLTDISFKQLMLFLL
                     INIIRIRLGNSLKVSNTKKELKLKMLILDIEDELKSNLSIVLNYEEKLFIESLILGMN
                     KQINSNNIKKSLYLNEELASYTKKIINLVSEESGINFNNDILLYEQLICHLNVTMHQM
                     KSNVYLENPLLDNIKTKFCFLFTVISSSIEIELKGKQITEDEIGYLTLHFQTSLERKY
                     SKRESNKKASIVCPFSFGVSMLLKVKIEKRFDNIKIIETLREEDLKRDNFNKTIDFII
                     AFQEYENIQKPIFITTPLFTDEDENKLKEFTNKIKEKDTSYKLMNRLMMSDYLIRELE
                     HDDIYEAITYLTNLLIEKHYAEKEYLQSIITREKSYPTNVGKGILFPHGDMKYIKQSV
                     LCFARLKTPIKIRNGKDIKIILLLAYKKDDDRKVFRELFKEISNLTEDENMLDILSKC
                     DIEKVKDILI"
     misc_feature    188368..189816
                     /locus_tag="CDBI1_00740"
                     /note="Transcriptional antiterminator [Transcription];
                     Region: BglG; COG3711"
                     /db_xref="CDD:226234"
     misc_feature    189262..189528
                     /locus_tag="CDBI1_00740"
                     /note="PRD domain; Region: PRD; pfam00874"
                     /db_xref="CDD:201484"
     misc_feature    189562..189819
                     /locus_tag="CDBI1_00740"
                     /note="PTS_IIB_bgl_like: the PTS (phosphotransferase
                     system) IIB domain of a family of sensory systems composed
                     of a membrane-bound sugar-sensor (similar to BglF) and a
                     transcription antiterminator (similar to BglG) which
                     regulate expression of genes involved...; Region:
                     PTS_IIB_bgl_like; cd05568"
                     /db_xref="CDD:99910"
     misc_feature    order(189580..189591,189595..189603)
                     /locus_tag="CDBI1_00740"
                     /note="P-loop; other site"
                     /db_xref="CDD:99910"
     misc_feature    order(189580..189582,189586..189591,189598..189603)
                     /locus_tag="CDBI1_00740"
                     /note="active site"
                     /db_xref="CDD:99910"
     misc_feature    189580..189582
                     /locus_tag="CDBI1_00740"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:99910"
     misc_feature    189868..190266
                     /locus_tag="CDBI1_00740"
                     /note="PTS_IIA, PTS system, fructose/mannitol specific IIA
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This...; Region: PTS_IIA_fru;
                     cd00211"
                     /db_xref="CDD:238129"
     misc_feature    order(189985..189987,190033..190035)
                     /locus_tag="CDBI1_00740"
                     /note="active site"
                     /db_xref="CDD:238129"
     misc_feature    190033..190035
                     /locus_tag="CDBI1_00740"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238129"
     gene            190413..190721
                     /locus_tag="CDBI1_00745"
                     /db_xref="GeneID:12215817"
     CDS             190413..190721
                     /locus_tag="CDBI1_00745"
                     /note="COG1447 Phosphotransferase system
                     cellobiose-specific component IIA"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IIA"
                     /protein_id="YP_006197317.1"
                     /db_xref="GI:384359465"
                     /db_xref="GeneID:12215817"
                     /translation="MEEIVLKIIIHAGNAKSMLYEALDYAKENDFKKADELIENANEE
                     ILKAHKVQTELIQKEAGGDKSDISILLIHSQDHLMTCMSERNLIKEMIMLRKEIQKLK
                     "
     misc_feature    190413..190703
                     /locus_tag="CDBI1_00745"
                     /note="PTS_IIA, PTS system, lactose/cellobiose specific
                     IIA subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This...; Region: PTS_IIA_lac;
                     cd00215"
                     /db_xref="CDD:238133"
     misc_feature    order(190413..190415,190575..190577,190623..190628,
                     190647..190649)
                     /locus_tag="CDBI1_00745"
                     /note="methionine cluster; other site"
                     /db_xref="CDD:238133"
     misc_feature    order(190458..190460,190629..190631,190635..190643)
                     /locus_tag="CDBI1_00745"
                     /note="active site"
                     /db_xref="CDD:238133"
     misc_feature    190629..190631
                     /locus_tag="CDBI1_00745"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238133"
     misc_feature    190638..190640
                     /locus_tag="CDBI1_00745"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:238133"
     gene            190746..191072
                     /locus_tag="CDBI1_00750"
                     /db_xref="GeneID:12215818"
     CDS             190746..191072
                     /locus_tag="CDBI1_00750"
                     /note="COG1440 Phosphotransferase system
                     cellobiose-specific component IIB"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IIB"
                     /protein_id="YP_006197318.1"
                     /db_xref="GI:384359466"
                     /db_xref="GeneID:12215818"
                     /translation="MKRKVYLFCSFGMSTSLLADKMQKVADEHNLPIEVEAFPIAEID
                     KIVEEKNPDCILLGPQVKYMLKELKPKFEAQGKLIDIINEVDYGTMNGEKVLKLAIKL
                     IKSKQA"
     misc_feature    190755..191048
                     /locus_tag="CDBI1_00750"
                     /note="PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme
                     II (EII) of the N,N-diacetylchitobiose-specific and
                     lichenan-specific phosphoenolpyruvate:carbohydrate
                     phosphotransferase system (PTS). In these systems, EII is
                     either a lichenan- or an N; Region:
                     PTS_IIB_chitobiose_lichenan; cd05564"
                     /db_xref="CDD:99906"
     misc_feature    order(190770..190772,190776..190781,190785..190790,
                     190923..190925,191004..191006)
                     /locus_tag="CDBI1_00750"
                     /note="active site"
                     /db_xref="CDD:99906"
     misc_feature    190770..190790
                     /locus_tag="CDBI1_00750"
                     /note="P-loop; other site"
                     /db_xref="CDD:99906"
     misc_feature    190770..190772
                     /locus_tag="CDBI1_00750"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:99906"
     gene            191111..192445
                     /locus_tag="CDBI1_00755"
                     /db_xref="GeneID:12215819"
     CDS             191111..192445
                     /locus_tag="CDBI1_00755"
                     /note="COG1455 Phosphotransferase system
                     cellobiose-specific component IIC"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system, cellobiose-specific IIC component"
                     /protein_id="YP_006197319.1"
                     /db_xref="GI:384359467"
                     /db_xref="GeneID:12215819"
                     /translation="MNRLERILMPLAEKIGKNKLLIAIRDGFLISSPLLIIGSLFLLV
                     ANFPIKGWNEFVGQIFGPDWAVKLQQPTVATFEVMTLLAVLGIGYSYAKQIDVDPIAS
                     AAVAIVAFFIVTPFVIPYTPEGTESVYMVTGIPLGWMGSKGMFVGMITAITSVKLFAA
                     VVKKGWTLKMPDGVPPTVSKSFAALIPSAIVMVVFFLVKIAFEATPYGSIHEFIFKFL
                     QMPLLKLGNSLGAMAIAYIFLHLFWFFGINGSSVVGAVYNPILKILSAENLAAFQAGS
                     KIPNIITGQFQDMFATFGGAGSTLSLVIAMLLICKSKRIKSMGKLSILPGIFGINEPL
                     IFGLPIMLNPILLIPFAIVPTINIIIAYFCMSAGLVPLTNGVQLPWTTPIIFSGFLTT
                     GWQGAVLQLVLLILGIFMYIPFIKMLDKQYLREENETVEEEDDDISFDDLVL"
     misc_feature    191120..192382
                     /locus_tag="CDBI1_00755"
                     /note="Phosphotransferase system cellobiose-specific
                     component IIC [Carbohydrate transport and metabolism];
                     Region: CelB; COG1455"
                     /db_xref="CDD:224372"
     gene            192456..192974
                     /locus_tag="CDBI1_00760"
                     /db_xref="GeneID:12215820"
     CDS             192456..192974
                     /locus_tag="CDBI1_00760"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197320.1"
                     /db_xref="GI:384359468"
                     /db_xref="GeneID:12215820"
                     /translation="MKKIVMILDQIQAGAGGKEKSNIPPAGKSSPLGPGVMMEQFLNE
                     SKVIATLFCGDEFFVNNEKEVTSKMIAMVKKLNPDVVICGPSFNYENFSKMSAILSKN
                     INDKTDIPAFAAMSEENIDVINEYKNDICIVKTPKKGGIGLNDSLNNICKLAKAIANK
                     EDITLMKEEFCY"
     misc_feature    192462..>192962
                     /locus_tag="CDBI1_00760"
                     /note="glycine reductase, selenoprotein B; Region:
                     gly_red_sel_B; TIGR01917"
                     /db_xref="CDD:130972"
     gene            193070..194029
                     /locus_tag="CDBI1_00765"
                     /db_xref="GeneID:12215821"
     CDS             193070..194029
                     /locus_tag="CDBI1_00765"
                     /note="COG1446 Asparaginase"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosylasparaginase"
                     /protein_id="YP_006197321.1"
                     /db_xref="GI:384359469"
                     /db_xref="GeneID:12215821"
                     /translation="MWGMIATWRMALEGITEASEHLEKGMEAGDAVELAVRRVEDYPF
                     YKSVGYGGLPNENCEVELDAAFMDGNTLDIGAVAGIRDYSNPVSIARKLSYEKVNNFL
                     VGIGAEDYAHKNGFERKNMLTDRAKLHYKKRKKETLDKGLSPYAGHDTVGMISLDKTG
                     KMCAATSTSGLFMKKRGRIGDSALSGSGFYVDSSIGGATATGLGEDLMKGCISYEIVR
                     LMKEGKHPQEACDIAVNELDKQLIKRRGKAGDLSLVAMNNKGEWGVATNIVDFTFSVV
                     TKEESPAVYISNRVDGKTIHKVISNEWMEAYEARIKAPIEVSE"
     misc_feature    193076..193894
                     /locus_tag="CDBI1_00765"
                     /note="Glycosylasparaginase catalyzes the hydrolysis of
                     the glycosylamide bond of asparagine-linked glycoproteins.
                     This enzyme is an amidase located inside lysosomes.
                     Mutation of this gene in humans causes a genetic disorder
                     known as aspartylglycosaminuria (AGU)...; Region:
                     Glycosylasparaginase; cd04513"
                     /db_xref="CDD:239950"
     misc_feature    order(193091..193093,193511..193519,193571..193573,
                     193601..193603,193670..193672)
                     /locus_tag="CDBI1_00765"
                     /note="active site"
                     /db_xref="CDD:239950"
     misc_feature    order(193283..193291,193304..193306,193364..193378,
                     193382..193387,193394..193399,193595..193606,
                     193619..193627,193637..193639,193682..193684,
                     193691..193693,193709..193711,193721..193723,
                     193775..193777)
                     /locus_tag="CDBI1_00765"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239950"
     misc_feature    193517..193519
                     /locus_tag="CDBI1_00765"
                     /note="catalytic nucleophile [active]"
                     /db_xref="CDD:239950"
     gene            194077..195129
                     /locus_tag="CDBI1_00770"
                     /db_xref="GeneID:12215822"
     CDS             194077..195129
                     /locus_tag="CDBI1_00770"
                     /note="COG0624 Acetylornithine
                     deacetylase/Succinyl-diaminopimelate desuccinylase and
                     related deacylases"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="YP_006197322.1"
                     /db_xref="GI:384359470"
                     /db_xref="GeneID:12215822"
                     /translation="MNIISNKIDELKEDLLSDIIDIVKIPSVKGESENGFPFGEKVGE
                     ALNKALEISKKLGFKVRNLDNYIGYAEHGDSDDYVCVIGHVDVVHEGDGWKHQPYKGE
                     ETNGRIYGRGVLDNKGPIMSALYGLYAIKELNLKLDKRVRIIFGTNEESGFEDIPYYL
                     EKEKTPIMGFTPDCKYPVVYGEKGMAKIRIKSKINYEEDVYLGFIENMSENVLVTYKE
                     LNIENSNTILDIKVKYDFSYKLKDVLDEIKASFPNSIDIEVISNFNPVYFDKESNLVK
                     KLQLAYERVTSLDGTPVTTNGGTYAKVMPNIVPFGPSFPGQKGIAHNPDEYMDIEDII
                     LNAKIFANAIYELAKE"
     misc_feature    194077..195126
                     /locus_tag="CDBI1_00770"
                     /note="Acetylornithine
                     deacetylase/Succinyl-diaminopimelate desuccinylase and
                     related deacylases [Amino acid transport and metabolism];
                     Region: ArgE; COG0624"
                     /db_xref="CDD:223697"
     misc_feature    194095..>194694
                     /locus_tag="CDBI1_00770"
                     /note="Zinc peptidases M18, M20, M28, and M42; Region:
                     Zinc_peptidase_like; cl14876"
                     /db_xref="CDD:246748"
     misc_feature    order(194326..194328,194419..194421,194521..194526,
                     194593..194595)
                     /locus_tag="CDBI1_00770"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:193495"
     misc_feature    <194731..195117
                     /locus_tag="CDBI1_00770"
                     /note="Zinc peptidases M18, M20, M28, and M42; Region:
                     Zinc_peptidase_like; cl14876"
                     /db_xref="CDD:246748"
     gene            195132..195806
                     /locus_tag="CDBI1_00775"
                     /db_xref="GeneID:12215823"
     CDS             195132..195806
                     /locus_tag="CDBI1_00775"
                     /note="COG3142 Uncharacterized protein involved in copper
                     resistance"
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein"
                     /protein_id="YP_006197323.1"
                     /db_xref="GI:384359471"
                     /db_xref="GeneID:12215823"
                     /translation="MLEIIGMSVEDAKIIEDCGADRIELVSALTEGGLTPSFGLIESV
                     VNSVKIPVNVMIRHHAKSFVYSKEDISIMQKDIGVVKEIGANGVVFGVLDKNNNIDEK
                     NLNVLLKCCDNLDVTFHRAIDESNTIDSVKILKDYDKITNILTSGGKGSIVDNIQMIK
                     NMMLSSNHIKILLGGGLNFNNIEKIKELTKASNFHFGTAIRINNSPFEDIDRQKLKQL
                     VNIISR"
     misc_feature    195132..195734
                     /locus_tag="CDBI1_00775"
                     /note="Uncharacterized protein involved in copper
                     resistance [Inorganic ion transport and metabolism];
                     Region: CutC; COG3142"
                     /db_xref="CDD:225684"
     gene            196359..196910
                     /locus_tag="CDBI1_00780"
                     /db_xref="GeneID:12215824"
     CDS             196359..196910
                     /locus_tag="CDBI1_00780"
                     /note="COG1544 Ribosome-associated protein Y (PSrp-1)"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="YP_006197324.1"
                     /db_xref="GI:384359472"
                     /db_xref="GeneID:12215824"
                     /translation="MNIIISGKQIELTDAIKNKIETKLSKLDNYIHPDTDVKVTVSAR
                     KARQKIEVTIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKS
                     IRFQDSEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN
                     IDSDEIAVVYKRNNGGYGIIEHE"
     misc_feature    196362..196595
                     /locus_tag="CDBI1_00780"
                     /note="RaiA ('ribosome-associated inhibitor A', also known
                     as Protein Y (PY), YfiA, and SpotY,  is a stress-response
                     protein that binds the ribosomal subunit interface and
                     arrests translation by interfering with aminoacyl-tRNA
                     binding to the ribosomal...; Region: RaiA; cd00552"
                     /db_xref="CDD:238308"
     misc_feature    order(196368..196370,196374..196376,196380..196382,
                     196434..196436,196443..196445,196461..196466,
                     196476..196478,196488..196490,196515..196517,
                     196527..196538,196545..196547,196551..196553,
                     196560..196562,196566..196568,196575..196577)
                     /locus_tag="CDBI1_00780"
                     /note="30S subunit binding site; other site"
                     /db_xref="CDD:238308"
     gene            197042..199717
                     /locus_tag="CDBI1_00785"
                     /db_xref="GeneID:12215825"
     CDS             197042..199717
                     /locus_tag="CDBI1_00785"
                     /note="'COG0653 Preprotein translocase subunit SecA
                     (ATPase, RNA helicase)'"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase SecA subunit"
                     /protein_id="YP_006197325.1"
                     /db_xref="GI:384359473"
                     /db_xref="GeneID:12215825"
                     /translation="MSFMDNLFNMADKKELKKFNKTVDIIDSLEPKFESMADSELKNM
                     TNIFKERLANGESIDDILPEAFAVVREVSKRVLGLRHYRVQMIGGIVLHQGRIAEMKT
                     GEGKTLVATAPVYLNALTGKGVHVVTVNDYLAKRDRDQMAKIYEFLGMSVGVIIHGQN
                     PKVRKEQYDCDITYGTNNEYGFDYLKDNMVIHKEQRVQRGLNYAIVDEVDSILIDEAR
                     TPLIISGPGDKSTHLYSDANTFVLTLKPDDYELEEKDKAVSLTASGIQKAEVYFNVDN
                     ITDISHTELYHHINQALRAHVIMKKDVDYVAKDGEIVIVDEFTGRLMFGRRYSEGLHQ
                     AIEAKEGLKIQRESKTLATVTFQNYFRMYKKLSGMTGTAKTEEEEFKAIYKMDVFQVP
                     TNKLMVREDLPDSVYKSEIGKFNAVAQEIIERHKVNQPILVGTVSIEKSELLSQILKK
                     KGIKHEVLNAKHHDKEAEIIAQAGRLGAVTIATNMAGRGTDIVLGGNPDFLTKREMRR
                     NGFKEEIVNRVDTPIEGIPVKGNEILFEAREEYEKLFEKFKQQTQEEQKQVVEAGGLA
                     IIGTERHESRRIDNQLRGRAGRQGDPGSSRFYIGLDDDLMRLFGSDRISGIVDKIGLE
                     EDMPIEHRILSKSIEGAQKKVEGKNFGIRKHVLQYDDVMNKQREIIYAERKRVLEGED
                     LQEQIQSMTHSIIEEAVTLYTQDKGFDEEGFKEHMYNLFLPKGSIEIPEIEKLNPVEI
                     TEKVYEIAMKIYTSKEEQVGYERMREVERVILLQAVDNHWIDHIDAMDQLRQGIGLRA
                     VGQQDPVIAYKMEGFDMFDEMNKHIKEDTVRYLFNITIETPVERKAVVDVENLSSPSD
                     GTLPTSKTVKKDEKVGRNDLCPCGSGKKYKNCCGR"
     misc_feature    197042..199714
                     /locus_tag="CDBI1_00785"
                     /note="preprotein translocase subunit SecA; Reviewed;
                     Region: PRK12904"
                     /db_xref="CDD:237259"
     misc_feature    197315..>197680
                     /locus_tag="CDBI1_00785"
                     /note="DEAD/DEAH box helicase; Region: DEAD; pfam00270"
                     /db_xref="CDD:215832"
     misc_feature    197348..197362
                     /locus_tag="CDBI1_00785"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238005"
     misc_feature    197660..197671
                     /locus_tag="CDBI1_00785"
                     /note="putative Mg++ binding site [ion binding]; other
                     site"
                     /db_xref="CDD:238005"
     misc_feature    197717..198052
                     /locus_tag="CDBI1_00785"
                     /note="SecA preprotein cross-linking domain; Region:
                     SecA_PP_bind; smart00958"
                     /db_xref="CDD:214938"
     misc_feature    199658..199714
                     /locus_tag="CDBI1_00785"
                     /note="SEC-C motif; Region: SEC-C; pfam02810"
                     /db_xref="CDD:202406"
     gene            199853..200839
                     /locus_tag="CDBI1_00790"
                     /db_xref="GeneID:12215826"
     CDS             199853..200839
                     /locus_tag="CDBI1_00790"
                     /note="COG1186 Protein chain release factor B"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="YP_006197326.1"
                     /db_xref="GI:384359474"
                     /db_xref="GeneID:12215826"
                     /translation="MNQQDFWNDNEVAQRVLQENKSLKETLEEYESLKSLLEDIEVLI
                     EIGLEEDDDSVERDIEKSIESMEEKLSEMKIKTLLNGEYDKNNAILSINAGTGGLDAQ
                     DWAQMLLRMYIRWSESKGYKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHR
                     LVRISPFDPSGKRHTSFASIDVTPELDENIEVEINPSDLKIDTYRASGAGGQHVNTTD
                     SAVRITHIPTGVVVQCQNERSQHLNKDRAMRLLMAKLIELKELEQKEKIEDIQGKYSQ
                     ITWGSQIRSYVFQPYKLVKDHRTNAEFGNVDSVMNGNIDLFINEYLKMNKIV"
     misc_feature    199853..200830
                     /locus_tag="CDBI1_00790"
                     /note="peptide chain release factor 2; Provisional;
                     Region: PRK05589"
                     /db_xref="CDD:235520"
     misc_feature    199985..200317
                     /locus_tag="CDBI1_00790"
                     /note="PCRF domain; Region: PCRF; pfam03462"
                     /db_xref="CDD:217573"
     misc_feature    200405..200746
                     /locus_tag="CDBI1_00790"
                     /note="RF-1 domain; Region: RF-1; pfam00472"
                     /db_xref="CDD:201249"
     gene            200983..203124
                     /locus_tag="CDBI1_00795"
                     /db_xref="GeneID:12215827"
     CDS             200983..203124
                     /locus_tag="CDBI1_00795"
                     /note="COG2183 Transcriptional accessory protein"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="YP_006197327.1"
                     /db_xref="GI:384359475"
                     /db_xref="GeneID:12215827"
                     /translation="MDINQILKKEFNLRDEQINNTLKLIDEGNTIPFIARYRKEMTGE
                     MSDVTLREFYEKLMYLRNLQSRKDDVVRLIDEQGKLTDEITQNIEKAKTLQEVEDIYA
                     PYKQKKRTRATIAKEKGLENLALSILENNLDNIEIEAKNYLDEEKEVLSIEDALKGAR
                     DIIAELVSDDAKIRKYIRELALREGMIVSKSATDEKSVYDMYYDYNEAVKSMAPHRVL
                     AINRGEKESFLKVKLEINNDKVLNYIINEYVNDKNFKNKEEIVSSIEDSYKRLIFPSI
                     EREIRNHLTEIAQERAISVFGKNVKSLLLQPPVKDKVVMGFDPAFRTGCKIAVVDKNG
                     KLLDYTTVYPTDPQNDVEGAKKVLKGLIEKYDIDIISIGNGTASRESETFVSEMIKEI
                     DSEVQYVIVSEAGASVYSASELANEEHPDINVSIRGAISIARRLQDPLAELVKIDPKS
                     IGVGQYQHDLNKKRLEEVLDGVVEDSVNSVGVDLNTASYSLLEHVAGISKAIAKNIIA
                     YREENGDFTSRAQLKKVKRLGPQAFTQCAGFMRILEGKNPLDNTGVHPESYDICKKMI
                     EIIGYSLDDVKNKNIGEIDEKIKEIGLRELSEKLEVGQVTLKDIIAEIKKPGRDPREE
                     GIKPILRTDVLKIEDIQEGMTLKGTIRNVVDFGAFVDIGIKNDGLVHKSEMSNSFVKD
                     PMSIVTVGDIVDVKVIGIDLNKKRVALSMKK"
     misc_feature    200983..203121
                     /locus_tag="CDBI1_00795"
                     /note="Transcriptional accessory protein [Transcription];
                     Region: Tex; COG2183"
                     /db_xref="CDD:225094"
     misc_feature    201001..201570
                     /locus_tag="CDBI1_00795"
                     /note="Tex-like protein N-terminal domain; Region: Tex_N;
                     pfam09371"
                     /db_xref="CDD:150144"
     misc_feature    201916..202212
                     /locus_tag="CDBI1_00795"
                     /note="Likely ribonuclease with RNase H fold; Region:
                     YqgFc; smart00732"
                     /db_xref="CDD:128971"
     misc_feature    202909..203112
                     /locus_tag="CDBI1_00795"
                     /note="S1_like: Ribosomal protein S1-like RNA-binding
                     domain. Found in a wide variety of RNA-associated
                     proteins. Originally identified in S1 ribosomal protein.
                     This superfamily also contains the Cold Shock Domain
                     (CSD), which is a homolog of the S1 domain; Region:
                     S1_like; cl09927"
                     /db_xref="CDD:245202"
     misc_feature    order(202933..202935,202957..202959,202987..202989,
                     202993..202995)
                     /locus_tag="CDBI1_00795"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:238094"
     gene            203272..204438
                     /locus_tag="CDBI1_00800"
                     /db_xref="GeneID:12215828"
     CDS             203272..204438
                     /locus_tag="CDBI1_00800"
                     /note="COG1228 Imidazolonepropionase and related
                     amidohydrolases"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="YP_006197328.1"
                     /db_xref="GI:384359476"
                     /db_xref="GeneID:12215828"
                     /translation="MIFIKNGKINTITNGIIHGDILIDEGKIIEIGEDLIAPLDVEVI
                     DASNKLVFPGFIDAHTHLGLWEDGIGFEGADGNEETDPITPQLNPIDGINPMDRTFKE
                     AFEGGITSVCTTPGSANVMGGQCIAIKTCGKRIDKMVIKNPVASKIAFGENPKSCYGQ
                     DDKSPQTRMAIAALLRENLKKAEEYLEDIDMYESHDDEDCEKPEYDIKMESLIPVLRR
                     EIPFKAHAHRADDMFTAIRIAKEFNLKLTLDHCTEGHLIVDELVEEGFPVIVGPSLSE
                     RSKFELRNLTFNTAGILSNAGLDVCIMTDHPVIPVQYLPICAGIAVKHGMKEEKAIES
                     ITINPAKTLGIEDRVGSIEVGKDADLVIWDNSPLEIQSNVLYTIINGKVVYEKK"
     misc_feature    203383..204426
                     /locus_tag="CDBI1_00800"
                     /note="Metallo-dependent hydrolases, subgroup C is part of
                     the superfamily of metallo-dependent hydrolases, a large
                     group of proteins that show conservation in their
                     3-dimensional fold (TIM barrel) and in details of their
                     active site. The vast majority of the...; Region:
                     Met_dep_hydrolase_C; cd01309"
                     /db_xref="CDD:238634"
     misc_feature    203404..204354
                     /locus_tag="CDBI1_00800"
                     /note="Amidohydrolase; Region: Amidohydro_4; pfam13147"
                     /db_xref="CDD:221936"
     misc_feature    order(203446..203448,203452..203454,203944..203946,
                     204019..204021,204184..204186)
                     /locus_tag="CDBI1_00800"
                     /note="active site"
                     /db_xref="CDD:238634"
     gene            204740..205345
                     /locus_tag="CDBI1_00805"
                     /db_xref="GeneID:12215829"
     CDS             204740..205345
                     /locus_tag="CDBI1_00805"
                     /note="COG3601 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin transporter"
                     /protein_id="YP_006197329.1"
                     /db_xref="GI:384359477"
                     /db_xref="GeneID:12215829"
                     /translation="MQNTAKRGNMISTRTLVVMSILSAISYLLMFIQAPIPGIFPDFL
                     KIDLSDIPAIFGGMSLGPLVGFGIVVVKNVLQAITATTTGGIGEFANILIGGSYVMIL
                     CYSYKRSGDLKGVLIGFVLGTISMTIIGSLVNYFVMLPLYGQLMGLDAIIGLGSAINP
                     QVHDLFTFVIWMIAPFNVLKAVIISLVTLPLYKKMGNIIKK"
     misc_feature    204767..205342
                     /locus_tag="CDBI1_00805"
                     /note="Predicted membrane protein [Function unknown];
                     Region: COG3601"
                     /db_xref="CDD:226129"
     misc_feature    204779..205315
                     /locus_tag="CDBI1_00805"
                     /note="Protein of unknown function (DUF3816); Region:
                     DUF3816; pfam12822"
                     /db_xref="CDD:221791"
     gene            205674..206714
                     /locus_tag="CDBI1_00810"
                     /db_xref="GeneID:12215830"
     CDS             205674..206714
                     /locus_tag="CDBI1_00810"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197330.1"
                     /db_xref="GI:384359478"
                     /db_xref="GeneID:12215830"
                     /translation="MHLSKKIKKLFLDDKGYYFNSNWEDIHIGIYDTKLGDSLKYITN
                     EYIENMERVKYDYRELKNIENQTDGMCILAIRQNYKALEYVKNQTEELCLEAIKYNYK
                     ALEYVKEQTEYLCLEAIKKDCNALKYVRNKTEGLIIKAISHSSNIDVVSILKALETQT
                     RRICLEAIKKDGRCLAYVREQSEELCIEAIKQNYKALKYVKNQTEKMCIESVRQNGMA
                     LQYVNKQTDKICIEAVKQDGRSLQFVNNKTEEICINAIRYLNKKYNIKDVLSYIDKYT
                     EDICIEIVRQNGKMLMYIKNQTEKMCIEAVKENYKSLKYVKEQSERICKEALKQNHKA
                     KEYVKIAIDDCI"
     misc_feature    205941..206069
                     /locus_tag="CDBI1_00810"
                     /note="Domain of unknown function (DUF4116); Region:
                     DUF4116; pfam13475"
                     /db_xref="CDD:222159"
     misc_feature    206154..206279
                     /locus_tag="CDBI1_00810"
                     /note="Domain of unknown function (DUF4116); Region:
                     DUF4116; pfam13475"
                     /db_xref="CDD:222159"
     misc_feature    206220..206345
                     /locus_tag="CDBI1_00810"
                     /note="Domain of unknown function (DUF4116); Region:
                     DUF4116; pfam13475"
                     /db_xref="CDD:222159"
     misc_feature    206286..206414
                     /locus_tag="CDBI1_00810"
                     /note="Domain of unknown function (DUF4116); Region:
                     DUF4116; pfam13475"
                     /db_xref="CDD:222159"
     gene            206853..207305
                     /locus_tag="CDBI1_00815"
                     /db_xref="GeneID:12215831"
     CDS             206853..207305
                     /locus_tag="CDBI1_00815"
                     /note="COG0802 Predicted ATPase or kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP hydrolase"
                     /protein_id="YP_006197331.1"
                     /db_xref="GI:384359479"
                     /db_xref="GeneID:12215831"
                     /translation="MAKIYLENENKTREIGYKLGKLLKEGSVICLVGDLGAGKTTMTQ
                     SLADSLGIEDYITSPTFTIINEYEGKIPLYHFDVYRIGSSDEMYDIGYDEYVNSNGIC
                     IIEWANLIEDILPKEYLNIELRYKDEGREMILTPKGEFYKEIVEELIK"
     misc_feature    206859..207296
                     /locus_tag="CDBI1_00815"
                     /note="Predicted ATPase or kinase [General function
                     prediction only]; Region: COG0802"
                     /db_xref="CDD:223873"
     gene            207305..208021
                     /locus_tag="CDBI1_00820"
                     /db_xref="GeneID:12215832"
     CDS             207305..208021
                     /locus_tag="CDBI1_00820"
                     /note="'COG1214 Inactive homolog of metal-dependent
                     proteases, putative molecular chaperone'"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotease"
                     /protein_id="YP_006197332.1"
                     /db_xref="GI:384359480"
                     /db_xref="GeneID:12215832"
                     /translation="MKILGMDTSSMAASVAVVEDDNLICEFTVNNKKTHSQKLMPMIE
                     NMLSMSDLSIKDMDLLAVCIGPGSFTGLRIGMATVKAMAHVNNIPIIAVNSLESLANN
                     INFCDRKICCILDAQKNQVYSAKYKFENGEMIELDGVDVVEFDALVDEIVSTNEEFII
                     VGEAVYKYKDKLENIKNIKIPSPANNVSNAGSLCSLALNKYNKNIDVHTCYTINPMYI
                     RKSQAEVQYDEKMKRLNNGR"
     misc_feature    207311..207961
                     /locus_tag="CDBI1_00820"
                     /note="tRNA threonylcarbamoyl adenosine modification
                     protein YeaZ; Region: T6A_YeaZ; TIGR03725"
                     /db_xref="CDD:234332"
     misc_feature    207401..>207916
                     /locus_tag="CDBI1_00820"
                     /note="Glycoprotease family; Region: Peptidase_M22;
                     pfam00814"
                     /db_xref="CDD:216132"
     gene            208011..208487
                     /locus_tag="CDBI1_00825"
                     /db_xref="GeneID:12215833"
     CDS             208011..208487
                     /locus_tag="CDBI1_00825"
                     /note="COG0456 Acetyltransferases"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ribosomal-protein-alanine
                     acetyltransferase"
                     /protein_id="YP_006197333.1"
                     /db_xref="GI:384359481"
                     /db_xref="GeneID:12215833"
                     /translation="MEDNTKLIVDDIKIEEMTTEDIDEVFEVEKNCFEDYWSKESFRK
                     ELSNEVARYIVAKLNGKIVGYVGIWLILDEGHINNVAVHSDYRGKKIGDKLIKCIVDL
                     CKDNNIASMTLEVRASNKIAQNLYRKYGFKMGGIRKEYYSDNKEDAIIMWNQLKEV"
     misc_feature    208071..208463
                     /locus_tag="CDBI1_00825"
                     /note="ribosomal-protein-alanine acetyltransferase;
                     Region: rimI; TIGR01575"
                     /db_xref="CDD:233477"
     misc_feature    208167..208352
                     /locus_tag="CDBI1_00825"
                     /note="N-Acyltransferase superfamily: Various enzymes that
                     characteristically catalyze the transfer of an acyl group
                     to a substrate; Region: NAT_SF; cd04301"
                     /db_xref="CDD:173926"
     misc_feature    order(208248..208256,208284..208289)
                     /locus_tag="CDBI1_00825"
                     /note="Coenzyme A binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:173926"
     gene            208493..209509
                     /locus_tag="CDBI1_00830"
                     /db_xref="GeneID:12215834"
     CDS             208493..209509
                     /locus_tag="CDBI1_00830"
                     /note="COG0533 Metal-dependent proteases with possible
                     chaperone activity"
                     /codon_start=1
                     /transl_table=11
                     /product="UGMP family protein"
                     /protein_id="YP_006197334.1"
                     /db_xref="GI:384359482"
                     /db_xref="GeneID:12215834"
                     /translation="MSDIITLAIESSCDETAASVLKNGREVLSNIISTQIETHKKFGG
                     VVPEVASRKHVENIDIVVQEALDKANIGFNDIDHIAVTYGPGLVGALLVGLSYAKALA
                     YTLNIPLVGVNHIEGHLSANYIEHKDLKPPFITLIVSGGHTHLVEVKDYGKYEILGKT
                     RDDASGEAFDKISRAMNLGYPGGPIIDNLAKNGNKHAIEFPRAYLEEDSYDFSFSGLK
                     SSVLNYLNGKRMKNEEIVVEDVAASFQEAVVEVLSNKALKAVKDKGYNIITLSGGVAS
                     NSGLRAKITELAKDNGITVKYPPLILCTDNAAMIGCAGYYNFINGKTHDMSLNAVPNL
                     KINQ"
     misc_feature    208502..209500
                     /locus_tag="CDBI1_00830"
                     /note="UGMP family protein; Validated; Region: PRK09604"
                     /db_xref="CDD:236585"
     misc_feature    208508..>208831
                     /locus_tag="CDBI1_00830"
                     /note="tRNA threonylcarbamoyl adenosine modification
                     protein YeaZ; Region: T6A_YeaZ; TIGR03725"
                     /db_xref="CDD:234332"
     gene            209806..212514
                     /locus_tag="CDBI1_00835"
                     /db_xref="GeneID:12215835"
     CDS             209806..212514
                     /locus_tag="CDBI1_00835"
                     /note="COG1882 Pyruvate-formate lyase"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate decarboxylase catalytic
                     subunit"
                     /protein_id="YP_006197335.1"
                     /db_xref="GI:384359483"
                     /db_xref="GeneID:12215835"
                     /translation="MSQSKEDKIRSILEAKNIKSNFQNKENLSEFNEKKASKRAEDLL
                     DVYYNTLSTADMEFPYWYNREYRKSDGDIPVVRRAKALKAAFSHMTPNIIPGEKIVMQ
                     KTRHYRGSFPMPWVSESFFVAQGEQMREEAKKLASNTADELTKFGSGGGNVTESFGNV
                     VSIAGKFGMRKEEVPVLVKMAKEWVGKSVEDLGFHYEKMMPDYDLKENLMSTLICMFD
                     SGYTLPQGREVINYFYPLNYGLDGIIEMAKECKKAVAGNASGDGLIGMDRLYFYEAVI
                     QVIEGLQTWILNYAKHAKYLESIETDLEAKKEYSDLVEILEHIAHKQPRTFREALQLT
                     YTIHIASVNEDAISGMSIGRFGQILYPWYEQDIEKGLITKEEVIELLELYRIKITCID
                     CFASAGVNGGVLSGNTFNTLSIGGLKEDGSTGANELEELLLEASMRCRTPQPSLTMLY
                     DEKLPEDFLMKAAECTKLGSGYPAWVNNSNGTTFMMKQFADEGMTVEEARAFALGGCL
                     ETSPGCWKQLTLNGKTYSIAGGAGQSAGSGVHFIANPKILELVLMNGKDHRMNIQVFE
                     PHNKPLDTYEEVIEVFKDYYKQAINVLERANNIELDIWRKFDTSIINSLLKPDCLDKG
                     QHIGNMGYRYNATLNVETCGTVTMVNSFAALKKLVYDDKAFTIEEMKDAILNNFGFKD
                     ALEVGNYSMADQVKVDKTGKYDAIYKACLDAPKYGNNDLYADNILKNYEVWLSKVCEE
                     AQSLYAKKMYPCQISVSTHGPQGAATLATPDGRLSGTTYSDGSVSAYAGTDKNGVYAL
                     FESATIWDQAVVQNSQMNLKLHPTTIKGQQGTKKLLDLTRSYLRKGGFHIQYNVVDSE
                     TLKDAQKNPDNYRQLMVRVAGFTQYWCELGKPIQDEVIARTEYEGV"
     misc_feature    209989..212502
                     /locus_tag="CDBI1_00835"
                     /note="glycyl radical enzyme, PFL2/glycerol dehydratase
                     family; Region: PFL2-3; TIGR01774"
                     /db_xref="CDD:233568"
     misc_feature    210031..212499
                     /locus_tag="CDBI1_00835"
                     /note="Pyruvate formate lyase 2 and related enzymes;
                     Region: PFL2_DhaB_BssA; cd01677"
                     /db_xref="CDD:153086"
     misc_feature    order(210148..210156,210175..210177,210391..210399,
                     210409..210414,210421..210432,210601..210606,
                     210610..210615,211597..211599,211609..211611,
                     211624..211626,212023..212031,212035..212037)
                     /locus_tag="CDBI1_00835"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:153086"
     misc_feature    order(210484..210486,210847..210852,211012..211014,
                     211030..211032,211321..211326,211330..211332,
                     211417..211419,212065..212067,212071..212073)
                     /locus_tag="CDBI1_00835"
                     /note="active site"
                     /db_xref="CDD:153086"
     misc_feature    212425..212439
                     /locus_tag="CDBI1_00835"
                     /note="glycine loop; other site"
                     /db_xref="CDD:153086"
     gene            212518..212775
                     /locus_tag="CDBI1_00840"
                     /db_xref="GeneID:12215836"
     CDS             212518..212775
                     /locus_tag="CDBI1_00840"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate decarboxylase regulatory
                     subunit"
                     /protein_id="YP_006197336.1"
                     /db_xref="GI:384359484"
                     /db_xref="GeneID:12215836"
                     /translation="MRKHSDCMNFCAVDATKGICRLSKQMINLDDSACPEIKVMPKCK
                     NCKNFVEANDEGIGKCVGLEKEDWVYSTLNAITCEGHVFNE"
     gene            212768..213718
                     /locus_tag="CDBI1_00845"
                     /db_xref="GeneID:12215837"
     CDS             212768..213718
                     /locus_tag="CDBI1_00845"
                     /note="COG1180 Pyruvate-formate lyase-activating enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate decarboxylase activating
                     subunit"
                     /protein_id="YP_006197337.1"
                     /db_xref="GI:384359485"
                     /db_xref="GeneID:12215837"
                     /translation="MSSQKQLEGMIFDVQSFSVHDGPGCRTTVFLNGCPLSCKWCANP
                     ESWTVRPHMMFSELSCQYENGCTVCHGKCKNGALSFNLDNKPVIDWNICKDCESFECV
                     NSCYYNAFKLCAKPYTVDELVQVIKRDSNNWRSNGGVTFSGGEPLLQHEFLHEVLLKC
                     HEVNIHTAIETSACVSNEVFNKIFKDIDFAFIDIKHMDREKHKEQTGVYNDLILENIS
                     NLANSDWNGRLVLRVPVISGFNDSAENISDIISFMHKNNLIEINLLPFHRLGESKWIQ
                     LGKEYEYSDKGDIDEEHLEELQDIFLDNGIACYVGHETAF"
     misc_feature    212798..213682
                     /locus_tag="CDBI1_00845"
                     /note="glycyl-radical enzyme activating protein family;
                     Region: PFLE_PFLC; TIGR02494"
                     /db_xref="CDD:233895"
     misc_feature    212822..>212938
                     /locus_tag="CDBI1_00845"
                     /note="anaerobic ribonucleotide reductase-activating
                     protein; Provisional; Region: nrdG; cl15804"
                     /db_xref="CDD:247076"
     gene            214038..215000
                     /locus_tag="CDBI1_00850"
                     /db_xref="GeneID:12215838"
     CDS             214038..215000
                     /locus_tag="CDBI1_00850"
                     /note="COG1266 Predicted metal-dependent membrane
                     protease"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-associated CAAX amino terminal
                     protease"
                     /protein_id="YP_006197338.1"
                     /db_xref="GI:384359486"
                     /db_xref="GeneID:12215838"
                     /translation="MNKSWSNLIIKNKDKKVRSGWIIITVMAAFYIFEYYLSTILMEI
                     IRKILIATGDINLKTNYFSEYANWLNDVGLQVVFQILTDSLMIIIPIIVWRFIMKNPI
                     SEMGLHSYRIKKKEGYVGMLLGIFNCTVIFIITITIGGGHVTSWVPKISPLTVSWILV
                     FILVAFAEEILNRGFFMAVLRRCKNIYFIMIVPSVIFGLIHIWNPDVTFLSVINIIII
                     GILFSYMFIKSSNIWMCIGYHFTWNVFQGIIYGMPVSGLQVPGIITTQITHGNLLNGG
                     MFGIEGGILTTFVNLLSFIFVWYYYRDSKYDFVSDKVNVTNIKN"
     misc_feature    214488..214772
                     /locus_tag="CDBI1_00850"
                     /note="CAAX protease self-immunity; Region: Abi;
                     pfam02517"
                     /db_xref="CDD:217080"
     gene            complement(215099..216079)
                     /locus_tag="CDBI1_00855"
                     /db_xref="GeneID:12215839"
     CDS             complement(215099..216079)
                     /locus_tag="CDBI1_00855"
                     /note="COG1266 Predicted metal-dependent membrane
                     protease"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197339.1"
                     /db_xref="GI:384359487"
                     /db_xref="GeneID:12215839"
                     /translation="MNLKLIWINILNPVFIKNEIKRKKIQIIIFFFINFGLTYSLGLL
                     LYYNKFIDPENFASFMMILPLSSVAIAKFYTEGLNNDMYEFYSLIILFFLIYSLLIVL
                     KLLNLINNNEFIIINLILTFISSLSIIIYSSNKKNLYPVKNIKLGSLLIIYFMISVIV
                     PTSFILILQGAQPNYSGIIKFIFTPITSLTTIYIFFSEEYAWRGFLQNIFFDKFGKKL
                     GVIILGMCWSLWHLPLIFTLYTPEAPILGVILRSIHIVGISIFLGYLYIKTKNIWFCA
                     IIHVLNNSAFLITNSKESTITYHDILIVSMVVLIFYVPFLFTKEYKNNLE"
     misc_feature    complement(215231..215515)
                     /locus_tag="CDBI1_00855"
                     /note="CAAX protease self-immunity; Region: Abi;
                     pfam02517"
                     /db_xref="CDD:217080"
     gene            217207..217674
                     /locus_tag="CDBI1_00860"
                     /db_xref="GeneID:12215919"
     CDS             217207..217674
                     /locus_tag="CDBI1_00860"
                     /note="COG0346 Lactoylglutathione lyase and related
                     lyases"
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase"
                     /protein_id="YP_006197340.1"
                     /db_xref="GI:384359488"
                     /db_xref="GeneID:12215919"
                     /translation="MKFLNVLIVVEDIEKSKKFYYDILGLKVICDFGENVVLEGNISL
                     QEKKLWLEFINKSDSEVKFNGNDAELYFEEDNFDTFVERLSTMKGIDYVHLAIEHRWG
                     QRAIRFYDLDGHIIEIGETMSSVCRRFLDSGLSIDEVAKRMDVTVEYIESVLE"
     misc_feature    217207..217572
                     /locus_tag="CDBI1_00860"
                     /note="This domain superfamily is found in a variety of
                     structurally related metalloproteins, including the type I
                     extradiol dioxygenases, glyoxalase I and a group of
                     antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
                     cl14632"
                     /db_xref="CDD:246679"
     misc_feature    order(217219..217221,217231..217233,217309..217311,
                     217333..217335,217339..217341,217411..217413,
                     217525..217527,217549..217551,217555..217557)
                     /locus_tag="CDBI1_00860"
                     /note="active site"
                     /db_xref="CDD:211348"
     misc_feature    order(217219..217221,217411..217413,217555..217557)
                     /locus_tag="CDBI1_00860"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:211348"
     misc_feature    217222..217560
                     /locus_tag="CDBI1_00860"
                     /note="Glyoxalase/Bleomycin resistance protein/Dioxygenase
                     superfamily; Region: Glyoxalase; pfam00903"
                     /db_xref="CDD:216182"
     gene            218845..219558
                     /locus_tag="CDBI1_00865"
                     /db_xref="GeneID:12215920"
     CDS             218845..219558
                     /locus_tag="CDBI1_00865"
                     /note="COG3279 Response regulator of the LytR/AlgR family"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator"
                     /protein_id="YP_006197341.1"
                     /db_xref="GI:384359489"
                     /db_xref="GeneID:12215920"
                     /translation="MINIIICEGKKSERVILNDYINTFFYNYNFEYNIKEFENGGDLL
                     KKYPNNVDIIFMDIDLNDENGFNVSKEIKKFDESVRIIFVSSSNKYIKKGYEIGVYRY
                     LEKPLKYSLFKEAISSYLKECYKNEAILSIKCKCKIYFIKVDDILYLEVLKNDLTIHT
                     EKGIYTFKNSMKEIESNLEEHNFFRCHKSYLINLMKVNMLDIENNIVFINQNSIIVSR
                     YKIKLLREKLNSCLVDVII"
     misc_feature    218986..219531
                     /locus_tag="CDBI1_00865"
                     /note="Response regulator of the LytR/AlgR family
                     [Transcription / Signal transduction mechanisms]; Region:
                     LytT; COG3279"
                     /db_xref="CDD:225818"
     misc_feature    <218989..219204
                     /locus_tag="CDBI1_00865"
                     /note="Signal receiver domain; originally thought to be
                     unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
                     recently identified in eukaroytes ETR1 Arabidopsis
                     thaliana; this domain receives the signal from the sensor
                     partner in a two-component systems; Region: REC; cd00156"
                     /db_xref="CDD:238088"
     misc_feature    order(219013..219015,219037..219039,219097..219099,
                     219148..219150,219157..219162)
                     /locus_tag="CDBI1_00865"
                     /note="active site"
                     /db_xref="CDD:238088"
     misc_feature    219013..219015
                     /locus_tag="CDBI1_00865"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238088"
     misc_feature    order(219022..219027,219031..219039)
                     /locus_tag="CDBI1_00865"
                     /note="intermolecular recognition site; other site"
                     /db_xref="CDD:238088"
     misc_feature    219157..219165
                     /locus_tag="CDBI1_00865"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238088"
     misc_feature    219253..219525
                     /locus_tag="CDBI1_00865"
                     /note="LytTr DNA-binding domain; Region: LytTR;
                     smart00850"
                     /db_xref="CDD:197918"
     gene            219831..221603
                     /locus_tag="CDBI1_00870"
                     /db_xref="GeneID:12215921"
     CDS             219831..221603
                     /locus_tag="CDBI1_00870"
                     /note="'COG1132 ABC-type multidrug transport system,
                     ATPase and permease components'"
                     /codon_start=1
                     /transl_table=11
                     /product="lantibiotic ABC transporter ATP-binding protein"
                     /protein_id="YP_006197342.1"
                     /db_xref="GI:384359490"
                     /db_xref="GeneID:12215921"
                     /translation="MENGKFQFFKGVRNCFNMIYLHDKRYLFISMFMAIFQGIVPSIS
                     LLVSQNIINNMQTFSKSVKEILVLLIMYLIINIIPSIFQSFYGYYRIKFNKNFEKHIE
                     TMMLEKSLTLSLKDFEDDNTYDMINRAQSQKGFNITILSENLISIIRESVSTLSLIVV
                     LSQFQLWLIIVVIVIPVLKSLYSIKLGKEQYDVSVNRTWKERKAWYIDYLLSKGYAYK
                     EIMVFRIGSKLINHYKKLKEDIISQDMNIAKKNFIATLLCTVLDSIVSAGIIGFIIIQ
                     GILKKILIGDATTYIQAVQSIKDNVESIFSLFSSVIQDLFYTDLLFKFLDYNCKEDSI
                     EHIKIFEKIGDINKIELINISYKYNHSSEYSLKNINLTLNKNDPIAILGKNGSGKTTL
                     LKILLGFYDDYEGDILINGKNLKDIEKDEYIRKVSCMFQDYIKYEATLKENVAMGDVY
                     KSNLEEKVKSKLKETKLKPSIYEEDGLETILGTWFGKKQLSMGEWQKVAISRTLMKDA
                     DMYIFDEPDSSLDSEAGNELLSLYKKTFENKIGIFITHHIQHAKKITNNIVVLENGKL
                     LESGRHDELMDKKGVYFNLFCNCK"
     misc_feature    219903..221591
                     /locus_tag="CDBI1_00870"
                     /note="ABC-type multidrug transport system, ATPase and
                     permease components [Defense mechanisms]; Region: MdlB;
                     COG1132"
                     /db_xref="CDD:224055"
     misc_feature    220875..221525
                     /locus_tag="CDBI1_00870"
                     /note="ATP-binding cassette domain of multidrug resistance
                     protein-like transporters; Region: ABCC_MRP_Like; cd03228"
                     /db_xref="CDD:213195"
     misc_feature    220977..221000
                     /locus_tag="CDBI1_00870"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213195"
     misc_feature    order(220986..220991,220995..221003,221121..221123,
                     221370..221375,221466..221468)
                     /locus_tag="CDBI1_00870"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213195"
     misc_feature    221112..221123
                     /locus_tag="CDBI1_00870"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213195"
     misc_feature    221298..221327
                     /locus_tag="CDBI1_00870"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213195"
     misc_feature    221358..221375
                     /locus_tag="CDBI1_00870"
                     /note="Walker B; other site"
                     /db_xref="CDD:213195"
     misc_feature    221382..221393
                     /locus_tag="CDBI1_00870"
                     /note="D-loop; other site"
                     /db_xref="CDD:213195"
     misc_feature    221454..221474
                     /locus_tag="CDBI1_00870"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213195"
     gene            221625..223046
                     /locus_tag="CDBI1_00875"
                     /db_xref="GeneID:12215922"
     CDS             221625..223046
                     /locus_tag="CDBI1_00875"
                     /note="COG0641 Arylsulfatase regulator (Fe-S
                     oxidoreductase)"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="YP_006197343.1"
                     /db_xref="GI:384359491"
                     /db_xref="GeneID:12215922"
                     /translation="MNQKPFIHTFKAGKSYFIYDVNTDKILKVNAAVYNYLNKIEHNL
                     EKESDWNIEIEDEINTLINYGFLKNKRVNKTMHPETKYIKYHIENNLSSIILQVTQNC
                     NLRCDYCIYSGSYSNRVHTNKRMNIDVAKRSIDYLIKNSSQLNEVSVGFYGGEPLLEF
                     DLIKQIVEYVKVVGEGKEIYFNLTTNATLFNEEIIEFFVKNNITTMISLDGGKEIHDK
                     SRKFANTGEGSHDVVLKNVRYIKNKYPEYYKKNITFNTVINSENDYISIDDFISKNET
                     LKDSNFLASTLNNNYSDKEIVSSDEYILGKSYDRFLTLLNKLKFIKDESMSPLSRIER
                     ALLDDFRYEKNIEGRLELPDVWHHGGPCIPGAFRIFVTTDGEFFPCERVSESSKMGMI
                     GNLDSGVDIEKAEKLLNIGKLYEEQCSDCWAYSYCDICIAKIDDTKCNENEIKPHDCD
                     RIRHSTENNMKDYCVLKSLGYQY"
     misc_feature    221640..223040
                     /locus_tag="CDBI1_00875"
                     /note="Cys-rich peptide radical SAM maturase CcpM; Region:
                     rSAM_ocin_clost; TIGR04068"
                     /db_xref="CDD:234455"
     misc_feature    221910..>222437
                     /locus_tag="CDBI1_00875"
                     /note="Radical SAM superfamily. Enzymes of this family
                     generate radicals by combining a 4Fe-4S cluster and
                     S-adenosylmethionine (SAM) in close proximity. They are
                     characterized by a conserved CxxxCxxC motif, which
                     coordinates the conserved iron-sulfur cluster; Region:
                     Radical_SAM; cd01335"
                     /db_xref="CDD:100105"
     misc_feature    order(221928..221930,221934..221936,221940..221942,
                     221946..221954,222078..222080,222084..222089,
                     222174..222182,222246..222248,222390..222392)
                     /locus_tag="CDBI1_00875"
                     /note="FeS/SAM binding site; other site"
                     /db_xref="CDD:100105"
     gene            223075..224145
                     /locus_tag="CDBI1_00880"
                     /db_xref="GeneID:12215923"
     CDS             223075..224145
                     /locus_tag="CDBI1_00880"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197344.1"
                     /db_xref="GI:384359492"
                     /db_xref="GeneID:12215923"
                     /translation="MEKVLIYPFNYNFFTILNHCNKISDIEINSLVSPSGWGLCNKEY
                     NVNNIITKVTNDFQSELKKNSLVWFVDSKENLDLEKFIIPKLKVALKEGKKILYTRDD
                     LNKISRYISHYEFKKINEWNLEKYEIRDIEGISQINTPIIFICGLYGGLDTFDVNIRI
                     GEELRKRGFSILQFGPKKESYLFKMIPIPEFMFDDSISSKTKIINFNHFIKDKEVEAK
                     PDLIIIEVPGELFPFSRKMVGNFGIRAFEISNAVINDCGILCIPSSIYDREYCEELKY
                     FIKGRHGINIDYFSIEKKVIDTYETEVKQKFSYMSLDENFFVEDIEDYEKTFFIHDNK
                     QLLELVDNIVNQLKEYAKVISI"
     misc_feature    223078..224121
                     /locus_tag="CDBI1_00880"
                     /note="peptide maturation system protein, TIGR04066
                     family; Region: nat_prod_clost"
                     /db_xref="CDD:234454"
     gene            224161..224412
                     /locus_tag="CDBI1_00885"
                     /db_xref="GeneID:12215924"
     CDS             224161..224412
                     /locus_tag="CDBI1_00885"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197345.1"
                     /db_xref="GI:384359493"
                     /db_xref="GeneID:12215924"
                     /translation="MNYTEKELLLENIFFDVTGINFNKNNNLKKELFFSPSLHIQPRE
                     LLLVFCEVIENFNIKIPEEKLLNRQFTSFDNVLKIINMV"
     misc_feature    224173..224400
                     /locus_tag="CDBI1_00885"
                     /note="peptide maturation system acyl carrier-related
                     protein; Region: ocin_ACP_rel; TIGR04069"
                     /db_xref="CDD:188584"
     gene            224463..224666
                     /locus_tag="CDBI1_00890"
                     /db_xref="GeneID:12215925"
     CDS             224463..224666
                     /locus_tag="CDBI1_00890"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197346.1"
                     /db_xref="GI:384359494"
                     /db_xref="GeneID:12215925"
                     /translation="MSFGKRIEMNNIGVETRGVCTIMCPYTCKMMASSSCNCKNNDYN
                     ARGGSYNTYYNKLIHGQRTPDGM"
     gene            225150..225443
                     /locus_tag="CDBI1_00895"
                     /db_xref="GeneID:12215926"
     CDS             225150..225443
                     /locus_tag="CDBI1_00895"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197347.1"
                     /db_xref="GI:384359495"
                     /db_xref="GeneID:12215926"
                     /translation="MISMIMMLIGVLFIVFGIILTAVEIKGKMPGFYGVGQNAVRKNA
                     IGIIAAGIALIFFRNGLDSIDSILTYGVFLVIELVVIGLYFLIRIKYDKDGNL"
     gene            complement(225575..226924)
                     /locus_tag="CDBI1_00900"
                     /db_xref="GeneID:12215927"
     CDS             complement(225575..226924)
                     /locus_tag="CDBI1_00900"
                     /note="COG0531 Amino acid transporters"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="YP_006197348.1"
                     /db_xref="GI:384359496"
                     /db_xref="GeneID:12215927"
                     /translation="MEKAKKLGLFSMILLGINSIIGSGIFLLPGKVYSLAGQNSMFIY
                     IFATLLVLSILLCFAEVGSMFDKNGGAYLYSKKAFGDFIGFEVGTMSWFIRIISWSTL
                     AVGFATALGSFWPESATEYKGCIAAILVTLLSINSLFGIKSTKIMNNVITIAKLVPLI
                     VFVIVGIFFIKFVNIVPSGNVVNSSMGPAIILVFYAFTGFESFIVASGEMENPKKNLP
                     IALITTIFICAIIYILIQIVCMGILGDRLFENSIPIADASSVFLGNYGKVFISVATLI
                     SIFGINIGSSIVTPKCGSSLAEEGSLPAFIGKTNKYGAPYVAIIISLICCIPLVLTGS
                     FEQLAVMSVIARFAQYIPTCLSVIVLRKRTDVKASFKIPFGPVIPMVAILGSLWLLQQ
                     AWAEDISKPITQNRVLIGLGAMLLIAPLYIFMKKNKEIEHKNKSEDSKLYISREKIQ"
     misc_feature    complement(225617..226831)
                     /locus_tag="CDBI1_00900"
                     /note="Amino acid transporters [Amino acid transport and
                     metabolism]; Region: PotE; COG0531"
                     /db_xref="CDD:223605"
     gene            complement(226961..228181)
                     /locus_tag="CDBI1_00905"
                     /db_xref="GeneID:12215928"
     CDS             complement(226961..228181)
                     /locus_tag="CDBI1_00905"
                     /note="COG1473 Metal-dependent
                     amidase/aminoacylase/carboxypeptidase"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase/peptidase"
                     /protein_id="YP_006197349.1"
                     /db_xref="GI:384359497"
                     /db_xref="GeneID:12215928"
                     /translation="MQQALKLKYQTKELGKDFVIESCNSIKPWLINIRRELHKIPELA
                     LEENLTKQKVISYLKEIGIDYMEFTKHNGIMAYILKESADKTICIRADMDALPIEEEN
                     NIPYKSIHSGKMHACGHDAHTTMLLGACKVLHSIKDKLNVNVKFLFQPAEEGFGGAKF
                     LVEDGCLENPKADYIFGLHVMPHIETGLIETKYDTLNASVDTIKISIKGKRAHGAYPE
                     NGIDAIVTASQIVTSLQTIISRNLEPNNAAVLTIGKIYGGDAHNVICEDVKLEGTLRT
                     LNSKTRNFMIDKIAKIVGDTASAFGCVGTLHVSDENYPAVINEKELVDTVISSTKELL
                     GEEKFILRPNPSLGGEDFSFYTEHCKGAFFHLGCKNEEKGLISPLHTSSFNIDEDCLP
                     IGVMMHVMNTLYFN"
     misc_feature    complement(226997..228124)
                     /locus_tag="CDBI1_00905"
                     /note="Metal-dependent
                     amidase/aminoacylase/carboxypeptidase [General function
                     prediction only]; Region: AbgB; COG1473"
                     /db_xref="CDD:224390"
     misc_feature    complement(226973..228094)
                     /locus_tag="CDBI1_00905"
                     /note="M20 Peptidase Aminoacylase 1 family; Region:
                     M20_Acy1; cd03886"
                     /db_xref="CDD:193507"
     misc_feature    complement(order(227042..227044,227645..227647,
                     227723..227725,227825..227827,227831..227833))
                     /locus_tag="CDBI1_00905"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:193507"
     misc_feature    complement(order(227363..227371,227387..227389,
                     227393..227398,227408..227428,227477..227479,
                     227486..227488,227495..227497,227507..227512,
                     227576..227578))
                     /locus_tag="CDBI1_00905"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:193507"
     gene            complement(228550..230562)
                     /locus_tag="CDBI1_00910"
                     /db_xref="GeneID:12215929"
     CDS             complement(228550..230562)
                     /locus_tag="CDBI1_00910"
                     /note="'COG3829 Transcriptional regulator containing PAS,
                     AAA-type ATPase, and DNA-binding domains'"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="YP_006197350.1"
                     /db_xref="GI:384359498"
                     /db_xref="GeneID:12215929"
                     /translation="MKKSVALVNDSRKDLIDFLENNLKLVFGDSININRYFINEINDN
                     DIINDDVILVMSVERLDKIINNILDKKKVIVVRRTFREDKIYNLLSLPQGTNALIVND
                     SDETTLETISLFYKIGVTNIRPIPYMNDNNYKNIKIAITPGVPEKVPSFISDIFDLGH
                     RYIDISTFIEIINLLQIDSKEIQSNLVKYSEEIISLDTGIKDKYKELFLKIEELDTIL
                     NLSKDGILFTSKDGEINTYNSKVKDILDINEDIYGKYIDDIFVDSLKVLLSEKEILDK
                     VVVFNKKYINVNKKNIYNRDEKMGTYYSLQEITYIKKLEQNLTKKLREKGQIAKYTFK
                     DIKTNSPKMFECIDLAKKVSKSDLSILIRGESGTGKELIAQSIHNNSNRKNQPFIAVN
                     CAAVPENLLESQLFGYDKGTFTGGLKDGKQGLFELANNGTIFLDEIGDMPLELQTKLL
                     RVLQEKQIMPVGSHNVINIDVRIISATNKNLEQMIDNSQFREDLYYRLNTIPINIPPL
                     RERKEDILIIMEDLINKKLVITPEAKKLIQNYMWKGNIRELQNVTSYLNIMCEDIVLE
                     KDLPPNLRSSDNKNTSLKLKYSKNDILNILEILILNKESDVGIGRGLILKALLDKNLQ
                     ITEGKIKKIFEYLKKEELIICSSGRYGSKITQKGEDFYNKLKYKGL"
     misc_feature    complement(228847..229944)
                     /locus_tag="CDBI1_00910"
                     /note="Transcriptional regulator containing PAS, AAA-type
                     ATPase, and DNA-binding domains [Transcription / Signal
                     transduction mechanisms]; Region: RocR; COG3829"
                     /db_xref="CDD:226350"
     misc_feature    complement(229042..229503)
                     /locus_tag="CDBI1_00910"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    complement(229450..229473)
                     /locus_tag="CDBI1_00910"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    complement(order(229129..229131,229255..229257,
                     229447..229470))
                     /locus_tag="CDBI1_00910"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    complement(229252..229269)
                     /locus_tag="CDBI1_00910"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    complement(229072..229074)
                     /locus_tag="CDBI1_00910"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     gene            231033..231683
                     /locus_tag="CDBI1_00915"
                     /db_xref="GeneID:12215930"
     CDS             231033..231683
                     /locus_tag="CDBI1_00915"
                     /note="COG0664 cAMP-binding proteins - catabolite gene
                     activator and regulatory subunit of cAMP-dependent protein
                     kinases"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding protein"
                     /protein_id="YP_006197351.1"
                     /db_xref="GI:384359499"
                     /db_xref="GeneID:12215930"
                     /translation="MKAEKTSIYPIIKNNLNKISIVEYKKGQRFVASDKDLQEVFFII
                     EGVALVECTTRGGNKFLVDIVPENEFIGKISYIYEHNLKCDIFAKTNIKLFRFEKNVF
                     EEFYLKPDFIALFHRKCTRRIYELYKTRMVRELFSCTEVIAYCISNKQENNVCNIKAI
                     RNFSEIYSISRKSRYHSLLKLTEKEIVKKMGNTYEILNYDELHKLAFEVKEFLEDE"
     misc_feature    231078..231626
                     /locus_tag="CDBI1_00915"
                     /note="cAMP-binding proteins - catabolite gene activator
                     and regulatory subunit of cAMP-dependent protein kinases
                     [Signal transduction mechanisms]; Region: Crp; COG0664"
                     /db_xref="CDD:223736"
     misc_feature    231078..231347
                     /locus_tag="CDBI1_00915"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
                     cd00038"
                     /db_xref="CDD:237999"
     misc_feature    order(231246..231251,231276..231284)
                     /locus_tag="CDBI1_00915"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:237999"
     gene            complement(231823..233199)
                     /locus_tag="CDBI1_00920"
                     /db_xref="GeneID:12215931"
     CDS             complement(231823..233199)
                     /locus_tag="CDBI1_00920"
                     /note="COG0534 Na+-driven multidrug efflux pump"
                     /codon_start=1
                     /transl_table=11
                     /product="drug/sodium antiporter"
                     /protein_id="YP_006197352.1"
                     /db_xref="GI:384359500"
                     /db_xref="GeneID:12215931"
                     /translation="MQELFSLKDENKRFYKILLSLCIPIIIQNLISTSVNVIDTIMIS
                     SLGETSVASVGVANQFFFLFNMSLSGITGGAGVFISQFYGKKDVSNIRKVTGLTCVLA
                     IVLSFVFVIPALLTPKPIIHIFSYDSEVVKLCIDYFSIAVFSYPLIAVSTVFSTGSRG
                     VRNPKLGMICSAFALVTNVILNYGFIFGNFGLPALGVKGAALATVIARICELILMITY
                     VYLYKKDYILKFGLKNLKAIDKIFIKSFSSKSFPIFVNDSVWAIGTVLYSVAYARAGT
                     SAIAASQIATSTGNFFIMTAVCIASGASIMLGNELGADHIKRAIEYAKKFSILVFSAG
                     LILGIILILNIPLLLKMFSVSDSLASDITKIFFIMGILMALKSFNTLVIIGILRSGGD
                     TKYALFLELGCMWLASIPLTFIAAFKGAPIFVLVLLTYSEEVVKFIFGVPRALSKKWA
                     INIVKEID"
     misc_feature    complement(231832..233199)
                     /locus_tag="CDBI1_00920"
                     /note="Na+-driven multidrug efflux pump [Defense
                     mechanisms]; Region: NorM; COG0534"
                     /db_xref="CDD:223608"
     misc_feature    complement(231853..233160)
                     /locus_tag="CDBI1_00920"
                     /note="Uncharacterized subfamily of the multidrug and
                     toxic compound extrusion (MATE) proteins; Region:
                     MATE_like_8; cd13134"
                     /db_xref="CDD:240539"
     gene            complement(233215..235128)
                     /locus_tag="CDBI1_00925"
                     /db_xref="GeneID:12215932"
     CDS             complement(233215..235128)
                     /locus_tag="CDBI1_00925"
                     /note="COG0488 ATPase components of ABC transporters with
                     duplicated ATPase domains"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="YP_006197353.1"
                     /db_xref="GI:384359501"
                     /db_xref="GeneID:12215932"
                     /translation="MIVLSCNNLNKSFGIDSILENISFTVNEGDKIGIIGVNGTGKTT
                     LFKIISGIYGYDSGDIYTSKDCEIGYLEQNTNFYSDNTILEEVLEVFKNLIEMESYLR
                     ELEVKISEESTKTNSPIIEKIMDEYSHKLELFSDLNGYGYKSEAKGVLKGLGFSDNDM
                     DKPISILSGGEKTRVLLGKLLLKKPTLLLLDEPTNHLDSEAIEWLEVFLKQYKGTVML
                     ISHDRYFLDQSVNRIFEVHNKKLKVYNGNYSKFVELSKIEKELELKKFEDQQKEIKKQ
                     EESIERLKAYGREKHLKRARSKEKALDKVDVLDKPEAYRKKARIQFTPSVQSGNDVLQ
                     IRDVSMGYGERILFKDLDLDIYRGEKVALIGANGVGKSTLFKIITNELQPLSGNIKFG
                     TNVHVSYFHQEQKTLNLDNTIIDEIWENNTHLTQTTLRNMLGAFLFVDEEVFKKISTL
                     SGGERARVAILKLILSNANLLLLDEPTNHLDIDSKEVLEEALTNYDGTIFTISHDRYF
                     LNTVVDKILVLDENGITEYLGNYDYYIDKKRQIQEMSIIEEKEEKTRTQIKDEKRKER
                     EQREIEKKNRIKRQNIEKEIEKLEIEIEKLDILLCQEEVYSNPDKAKEVSQEKINLEN
                     NLASLYDEWEEFM"
     misc_feature    complement(233509..235128)
                     /locus_tag="CDBI1_00925"
                     /note="ATPase components of ABC transporters with
                     duplicated ATPase domains [General function prediction
                     only]; Region: Uup; COG0488"
                     /db_xref="CDD:223562"
     misc_feature    complement(<234910..235119)
                     /locus_tag="CDBI1_00925"
                     /note="ATP-binding cassette domain of elongation factor 3,
                     subfamily F; Region: ABCF_EF-3; cd03221"
                     /db_xref="CDD:213188"
     misc_feature    complement(234409..>234630)
                     /locus_tag="CDBI1_00925"
                     /note="ATP-binding cassette domain of elongation factor 3,
                     subfamily F; Region: ABCF_EF-3; cd03221"
                     /db_xref="CDD:213188"
     misc_feature    complement(234163..234429)
                     /locus_tag="CDBI1_00925"
                     /note="ABC transporter; Region: ABC_tran_2; pfam12848"
                     /db_xref="CDD:221805"
     misc_feature    complement(233560..234132)
                     /locus_tag="CDBI1_00925"
                     /note="ATP-binding cassette domain of elongation factor 3,
                     subfamily F; Region: ABCF_EF-3; cd03221"
                     /db_xref="CDD:213188"
     gene            235264..235896
                     /locus_tag="CDBI1_00930"
                     /db_xref="GeneID:12215933"
     CDS             235264..235896
                     /locus_tag="CDBI1_00930"
                     /note="COG2344 AT-rich DNA-binding protein"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="YP_006197354.1"
                     /db_xref="GI:384359502"
                     /db_xref="GeneID:12215933"
                     /translation="MLGNKNISMAVIRRLPKYHRYLGDLLDRDIQRISSKELSDIIGF
                     TASQIRQDLNNFGGFGQQGYGYNVEALHTEIGKILGLDRPYNAVLVGAGNLGQAIANY
                     AGFRKAGFEIKALFDANPRMIGLKIREFEVLDSDTLEDFIKNNNIDIAVLCIPKNGAQ
                     EVINRVVKAGIKGVWNFAPLDLEVPKGVIVENVNLTESLFTLSYLMKEGK"
     misc_feature    235264..235893
                     /locus_tag="CDBI1_00930"
                     /note="redox-sensing transcriptional repressor Rex;
                     Provisional; Region: PRK05472"
                     /db_xref="CDD:235486"
     misc_feature    235276..235422
                     /locus_tag="CDBI1_00930"
                     /note="Putative DNA-binding protein N-terminus; Region:
                     Put_DNA-bind_N; pfam06971"
                     /db_xref="CDD:219246"
     misc_feature    235507..235800
                     /locus_tag="CDBI1_00930"
                     /note="CoA binding domain; Region: CoA_binding; pfam02629"
                     /db_xref="CDD:202320"
     gene            236044..236574
                     /locus_tag="CDBI1_00935"
                     /db_xref="GeneID:12215934"
     CDS             236044..236574
                     /locus_tag="CDBI1_00935"
                     /note="COG2191 Formylmethanofuran dehydrogenase subunit E"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197355.1"
                     /db_xref="GI:384359503"
                     /db_xref="GeneID:12215934"
                     /translation="MEELWKKAIEFHGHECPGLAIGFKAALAARKYLGCKQSGDEEIV
                     CISENDACGIDGIQVVLSCTMGKGNLLLRMTGKSVYHFFNRENGKSIRIYVKSKPFQM
                     DREGYKKYLLESDFEEIFEITDTKLRLPEKARIFKSLKCEVCGEFASEQYIRIEEGKK
                     VCLDCFNKYERFYEEY"
     misc_feature    236047..236550
                     /locus_tag="CDBI1_00935"
                     /note="Formylmethanofuran dehydrogenase subunit E [Energy
                     production and conversion]; Region: COG2191"
                     /db_xref="CDD:225102"
     misc_feature    236071..236406
                     /locus_tag="CDBI1_00935"
                     /note="FmdE, Molybdenum formylmethanofuran dehydrogenase
                     operon; Region: FmdE; pfam02663"
                     /db_xref="CDD:217171"
     misc_feature    236464..236556
                     /locus_tag="CDBI1_00935"
                     /note="Prokaryotic dksA/traR C4-type zinc finger; Region:
                     zf-dskA_traR; pfam01258"
                     /db_xref="CDD:201690"
     gene            complement(236750..236920)
                     /locus_tag="CDBI1_00940"
                     /db_xref="GeneID:12215935"
     CDS             complement(236750..236920)
                     /locus_tag="CDBI1_00940"
                     /note="COG1145 Ferredoxin"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="YP_006197356.1"
                     /db_xref="GI:384359504"
                     /db_xref="GeneID:12215935"
                     /translation="MAYKITDACISCGACEAECPVSCISAGDDAYVIDAGSCIDCGSC
                     AGACPVDAPQPE"
     misc_feature    complement(236774..236914)
                     /locus_tag="CDBI1_00940"
                     /note="4Fe-4S dicluster domain; Region: Fer4_10;
                     pfam13237"
                     /db_xref="CDD:205417"
     gene            237205..238272
                     /locus_tag="CDBI1_00945"
                     /db_xref="GeneID:12215936"
     CDS             237205..238272
                     /locus_tag="CDBI1_00945"
                     /note="COG2843 Putative enzyme of poly-gamma-glutamate
                     biosynthesis (capsule formation)"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="YP_006197357.1"
                     /db_xref="GI:384359505"
                     /db_xref="GeneID:12215936"
                     /translation="MKNKLVYICIMSLLLFVVGCSNNPNKESTIKKDSKNNQSQVKEE
                     KREPVKKDITISFAGDVTMGNYKGSSYYGSFDHEFKRQGEDYNYFLKNVKPVFEKDDL
                     TVVNLEGPLTTASNAKEKKFAFKGKPGYVNILKSGSIEAVSIANNHSEDYFEEGMKDT
                     QFILDENKINYFGLGKDAVVDVKGIKVGLLGYNGLSTEYNEKNLKQMEDDIKSLKKKS
                     DVVVVYFHWGIELDYYPDKKQKDFAHYAIDKGADLVMGSHPHVIQGIEKYKNKYIAYS
                     LGNFCFGGNKNPSDTDSYIYQQTFTFSDNKLTSIKEPNIIPTSITSSSSRNNYQPKVL
                     DGSEKDRVLNKLEKISKDLNK"
     misc_feature    237364..238053
                     /locus_tag="CDBI1_00945"
                     /note="Bacterial capsule synthesis protein PGA_cap;
                     Region: PGA_cap; smart00854"
                     /db_xref="CDD:214858"
     misc_feature    237367..238050
                     /locus_tag="CDBI1_00945"
                     /note="CapA and related proteins, metallophosphatase
                     domain; Region: MPP_CapA; cd07381"
                     /db_xref="CDD:163624"
     misc_feature    order(237382..237384,237388..237390,237526..237528,
                     237643..237648,237880..237882,237976..237978,
                     237982..237984)
                     /locus_tag="CDBI1_00945"
                     /note="putative active site [active]"
                     /db_xref="CDD:163624"
     misc_feature    order(237382..237384,237388..237390,237526..237528,
                     237643..237645,237880..237882,237976..237978,
                     237982..237984)
                     /locus_tag="CDBI1_00945"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:163624"
     gene            238442..240343
                     /locus_tag="CDBI1_00950"
                     /db_xref="GeneID:12215937"
     CDS             238442..240343
                     /locus_tag="CDBI1_00950"
                     /note="COG1151 6Fe-6S prismane cluster-containing protein"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase, acetyl-CoA synthase subunit"
                     /protein_id="YP_006197358.1"
                     /db_xref="GI:384359506"
                     /db_xref="GeneID:12215937"
                     /translation="MACNTCKMCESADKKLESFVASKDVETAFHRTEDQKVKCGFGLQ
                     GVCCRLCSNGPCRVTPKSPRGICGADADTIVARNFLRAVASGAACYLHVVENTAKNLK
                     NVGITKGVVKGEKTLNQLAEMFGIESDEKYDKCIKVADKVINDLYKSRDDKMELVEKI
                     AYAPRVKKWKELGIMPGGAKSEVFDAIVKSSTNLNSDPVDMLVNCLNLGISTGLYGLT
                     LTNLLNDVMLGEPVIRMAPVGFNVIDPDYINIMITGHQHSTFANFQDRLKDEDVIKLA
                     QSVGAKGFKLVGCTCVGQDLQLRGEHYQEVFAGHAGNNFTSEAVLSTGAIDIVLSEFN
                     CTIPGLEPIADKYKVKMVCLDDVAKKANAEYIGLDRSKLDELSNTLIEKALESYKERR
                     GSIEIDIPKDHGFEQSLTGVSEKNLKAFLGDSWKPLINLIAEGKIKGVAAVVGCSNMT
                     AGGHDVNTVELTKELIKKDIIVLSAGCSTGGLENVGLMSPGAEELAGENLKEVCKTLG
                     IPPVLNFGPCLAIGRLEIVATELAAELGIDLPQLPLVLSAPQWLEEQALADGAFGLAL
                     GLPLHLALPPFITGGKLVTEVLTEKLKDLTGGHVIVNPDPKSSANQLEEIIIDRRKNL
                     GLKDVECNA"
     misc_feature    238466..240319
                     /locus_tag="CDBI1_00950"
                     /note="carbon-monoxide dehydrogenase, catalytic subunit;
                     Region: CO_DH_cata; TIGR01702"
                     /db_xref="CDD:130763"
     misc_feature    238496..240319
                     /locus_tag="CDBI1_00950"
                     /note="The HCP family of iron-sulfur proteins includes
                     hybrid cluster protein (HCP), acetyl-CoA synthase (ACS),
                     and carbon monoxide dehydrogenase (CODH), all of which
                     contain [Fe4-S4] metal clusters at their active sites.
                     These proteins have a conserved...; Region: HCP_like;
                     cl14655"
                     /db_xref="CDD:246686"
     misc_feature    order(238685..238687,238691..238696,238703..238708,
                     240101..240106)
                     /locus_tag="CDBI1_00950"
                     /note="ACS interaction site; other site"
                     /db_xref="CDD:238330"
     misc_feature    order(238694..238696,238703..238705,238715..238717,
                     238724..238726,240098..240106)
                     /locus_tag="CDBI1_00950"
                     /note="CODH interaction site; other site"
                     /db_xref="CDD:238330"
     misc_feature    order(239777..239779,239870..239872,239993..239995,
                     240098..240100,240104..240106)
                     /locus_tag="CDBI1_00950"
                     /note="metal cluster binding site [ion binding]; other
                     site"
                     /db_xref="CDD:238330"
     gene            240336..240809
                     /locus_tag="CDBI1_00955"
                     /db_xref="GeneID:12215938"
     CDS             240336..240809
                     /locus_tag="CDBI1_00955"
                     /note="COG1142 Fe-S-cluster-containing hydrogenase
                     components 2"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase, electron transfer subunit"
                     /protein_id="YP_006197359.1"
                     /db_xref="GI:384359507"
                     /db_xref="GeneID:12215938"
                     /translation="MHRIFINKDLCTGCKSCVLACMLKHNKDYDMYTLDLENIDNDSR
                     GHIELDSKHNNPVPILCRHCDEPECVLACMSGAMHKDSESGIVSYDEEKCGSCYMCVM
                     SCPYGLLKPDDRSKQNILKCDLCKDEEYPRCVANCPSGAIELQKEENDELCSVRG"
     misc_feature    240504..240770
                     /locus_tag="CDBI1_00955"
                     /note="4Fe-4S dicluster domain; Region: Fer4_11;
                     pfam13247"
                     /db_xref="CDD:205427"
     misc_feature    <240609..240782
                     /locus_tag="CDBI1_00955"
                     /note="RPB11 and RPB3 subunits of RNA polymerase; Region:
                     RNAP_RPB11_RPB3; cl11409"
                     /db_xref="CDD:245605"
     gene            240784..242010
                     /locus_tag="CDBI1_00960"
                     /db_xref="GeneID:12215939"
     CDS             240784..242010
                     /locus_tag="CDBI1_00960"
                     /note="COG0446 Uncharacterized NAD(FAD)-dependent
                     dehydrogenases"
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase, NAD/FAD binding subunit"
                     /protein_id="YP_006197360.1"
                     /db_xref="GI:384359508"
                     /db_xref="GeneID:12215939"
                     /translation="MNYVVLGASAAGINAVKTLRELDKDSNIVVISKDENVYSRCMLH
                     HVISEHRTLKQINFVDEDFMEQNNVKWIAGKTVKGIDINKKVVQTEDITVNYDKLLIA
                     TGASSAIPPIKNLRDGNFVYSVRNIDDIYKIKEKAQNSKNVVIIGAGLVGIDALVGLF
                     KYEQLNISVAFMEKYILDRQLDEYTASVYENKFKEKGVKFYPSASIQEIVLDNSKNVT
                     GVAFSNGEVLDADMVIVATGVKPNADFLDGTGIEYDRGIIIDDMCQTTQKDIYAAGDV
                     VGKNAIWPLAVKQGIVAAYNMVGKDKKIEDEFAFKNSMNFMDIPTISIGMNTPVDDSY
                     KVLTRHGINDYKKFVFKDNVIYGAVIQGDISYVGVLTYLIKNKVEIYDLENRIFDVCY
                     ADFFNIKENGEFCYSV"
     misc_feature    240790..241893
                     /locus_tag="CDBI1_00960"
                     /note="Uncharacterized NAD(FAD)-dependent dehydrogenases
                     [General function prediction only]; Region: HcaD; COG0446"
                     /db_xref="CDD:223523"
     misc_feature    240793..241260
                     /locus_tag="CDBI1_00960"
                     /note="NAD(P)-binding Rossmann-like domain; Region:
                     NAD_binding_8; cl17500"
                     /db_xref="CDD:248054"
     misc_feature    241207..241458
                     /locus_tag="CDBI1_00960"
                     /note="Pyridine nucleotide-disulphide oxidoreductase;
                     Region: Pyr_redox; pfam00070"
                     /db_xref="CDD:215691"
     gene            complement(242149..243336)
                     /locus_tag="CDBI1_00965"
                     /db_xref="GeneID:12215940"
     CDS             complement(242149..243336)
                     /locus_tag="CDBI1_00965"
                     /note="COG2230 Cyclopropane fatty acid synthase and
                     related methyltransferases"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase"
                     /protein_id="YP_006197361.1"
                     /db_xref="GI:384359509"
                     /db_xref="GeneID:12215940"
                     /translation="MNITKNFLKDYLEKFGETPFLVRLKDEEEFLIGEGSPQFKVIVN
                     NDISKSELLKSTSLALGEAYINRDIEVEGDLFLTLNLLLKQIDKFNIDNSAVKHLLHS
                     SNSMRHQKKEIHAHYDIGNDFYSLWLDKTLSYSCAYFRNDNDTLYDAQVNKVHHILTK
                     LNLEEGMSLLDIGCGWGFLLIEAAKKYKIHGVGITLSEEQFKEFNARIKEENLQDYLE
                     VRLMDYRELKKSDLMFDRVVSVGMLEHVGRENYELFIKNVNAVLKDGGLFLLHYISGL
                     QESYGDPWIKKYIFPGGVIPSLREMIHICSDYKYHTIDVESLRLHYVKTLLYWQKSFS
                     ENLPKIKEMFDDKFIRMWDLYLCSCAAAFNTGIIDIHQILFTKGIKNDLPLTREYMYN
                     CSK"
     misc_feature    complement(242206..243027)
                     /locus_tag="CDBI1_00965"
                     /note="Cyclopropane fatty acid synthase and related
                     methyltransferases [Cell envelope biogenesis, outer
                     membrane]; Region: Cfa; COG2230"
                     /db_xref="CDD:225139"
     misc_feature    complement(242518..242832)
                     /locus_tag="CDBI1_00965"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    complement(order(242617..242619,242665..242673,
                     242749..242754,242803..242823))
                     /locus_tag="CDBI1_00965"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            243609..244433
                     /locus_tag="CDBI1_00970"
                     /db_xref="GeneID:12215941"
     CDS             243609..244433
                     /locus_tag="CDBI1_00970"
                     /note="'COG0444 ABC-type dipeptide/oligopeptide/nickel
                     transport system, ATPase component'"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="YP_006197362.1"
                     /db_xref="GI:384359510"
                     /db_xref="GeneID:12215941"
                     /translation="MEVYALVGSSGTGKSFKALEFAYENDIEYIIDDGILIYKNKVLA
                     GISAKQANTTIEAVKRAIFYNLEHRQEVREAIKKENIRKILIIGTSKKMVNQIVERLS
                     IGRVCKFINIQDISTKYEIEIAKQARKEGNHVIPVPAVEIKSMASGLSINSLKRLFRK
                     GNNRNMVVLEKTIIRPTFSYIGKFYISADVIKQIIEYEVYNFGSIDRINKINIENCNN
                     FMNIFVSININDLETIKKIEDIQQTIKKSIEKMTLVNVQKIDINIHKIKKINFLQC"
     misc_feature    <243672..243842
                     /locus_tag="CDBI1_00970"
                     /note="Pyruvate ferredoxin/flavodoxin oxidoreductase;
                     Region: POR; cl00546"
                     /db_xref="CDD:241937"
     gene            244562..245827
                     /locus_tag="CDBI1_00975"
                     /db_xref="GeneID:12215942"
     CDS             244562..245827
                     /locus_tag="CDBI1_00975"
                     /note="COG0334 Glutamate dehydrogenase/leucine
                     dehydrogenase"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate dehydrogenase, NAD-specific"
                     /protein_id="YP_006197363.1"
                     /db_xref="GI:384359511"
                     /db_xref="GeneID:12215942"
                     /translation="MSGKDVNVFEMAQSQVKNACDKLGMEPAVYELLKEPMRVIEVSI
                     PVKMDDGSIKTFKGFRSQHNDAVGPTKGGIRFHQNVSRDEVKALSIWMTFKCSVTGIP
                     YGGGKGGIIVDPSTLSQGELERLSRGYIDGIYKLIGEKVDVPAPDVNTNGQIMSWMVD
                     EYNKLTGQSSIGVITGKPVEFGGSLGRTAATGFGVAVTAREAAAKLGIDMKKAKIAVQ
                     GIGNVGSYTVLNCEKLGGTVVAMAEWCKSEGSYAIYNENGLDGQAMLDYMKEHGNLLN
                     FPGAKRISLEEFWASDVDIVIPAALENSITKEVAESIKAKLVCEAANGPTTPEADEVF
                     AERGIVLTPDILTNAGGVTVSYFEWVQNLYGYYWSEEEVEQKEEIAMVKAFESIWKIK
                     EEYNVTMREAAYMHSIKKVAEAMKLRGWY"
     misc_feature    244580..245824
                     /locus_tag="CDBI1_00975"
                     /note="Glutamate dehydrogenase/leucine dehydrogenase
                     [Amino acid transport and metabolism]; Region: GdhA;
                     COG0334"
                     /db_xref="CDD:223411"
     misc_feature    244667..245059
                     /locus_tag="CDBI1_00975"
                     /note="Glu/Leu/Phe/Val dehydrogenase, dimerization domain;
                     Region: ELFV_dehydrog_N; pfam02812"
                     /db_xref="CDD:251546"
     misc_feature    245105..245800
                     /locus_tag="CDBI1_00975"
                     /note="NAD(P) binding domain of glutamate dehydrogenase,
                     subgroup 1; Region: NAD_bind_1_Glu_DH; cd01076"
                     /db_xref="CDD:133445"
     misc_feature    order(245222..245230,245288..245293,245459..245464,
                     245522..245530)
                     /locus_tag="CDBI1_00975"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:133445"
     gene            246020..246676
                     /locus_tag="CDBI1_00980"
                     /db_xref="GeneID:12215943"
     CDS             246020..246676
                     /locus_tag="CDBI1_00980"
                     /note="'COG4219 Antirepressor regulating drug resistance,
                     predicted signal transduction N-terminal membrane
                     component'"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197364.1"
                     /db_xref="GI:384359512"
                     /db_xref="GeneID:12215943"
                     /translation="MYFLPPHDYKLEELDWIFGHELMYFKSKDLHLKYLVLFLKIVYW
                     FNPFIYIMEKYMDLDCELYCDERVLKNCTVQQKQEYALTIVNSMKRGINFSNKFVTGL
                     NKQSDIRKRVMNMFSEKHKNGILMALIISLFSSITFFKFDSTSLIEENDFLERSRYAF
                     EGRQEDMFVTIDSTYADAPIKLRKEHEENCRVNGIVPKDSDSIEIIPRFYKDCMDLKK
                     "
     misc_feature    <246053..246361
                     /locus_tag="CDBI1_00980"
                     /note="BlaR1 peptidase M56; Region: Peptidase_M56;
                     pfam05569"
                     /db_xref="CDD:218642"
     gene            247007..248140
                     /locus_tag="CDBI1_00985"
                     /db_xref="GeneID:12215944"
     CDS             247007..248140
                     /locus_tag="CDBI1_00985"
                     /note="'COG4219 Antirepressor regulating drug resistance,
                     predicted signal transduction N-terminal membrane
                     component'"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-associated metalloprotease"
                     /protein_id="YP_006197365.1"
                     /db_xref="GI:384359513"
                     /db_xref="GeneID:12215944"
                     /translation="MSNFILNGIFRTVIVSSLSILLILIFKKNVFKRFSKKFNYYIWM
                     IVVIKLFLPFTYYTFTINILRSKKHININNINLEGFNNVSTISNNIILYTWIITVVVY
                     LIYTIFKYIKLKNLINDLSYDVDDREIVNLYKNILEEFNITKDIKLKYSYEVETPAFF
                     NSCVLLPPHEYKLKELDWIFRHELMHFKSRDLYLKYVILFLKTVYWFNPFIYIMDKHI
                     DLDCELYCDERVLKNRNSEEKKDYALTILNAMRKGSNTSNKFIAGLHKQSDIKKRVMN
                     MFNEKYKNGILMALTLCLLSSITFLKVNSTSIVNLNVLPKGFEDLRTVSSIRFSVIGF
                     TYADAPKNMREEYKINCESLGLIPKDSDKIEVGVEYYDSLLND"
     misc_feature    247100..247834
                     /locus_tag="CDBI1_00985"
                     /note="BlaR1 peptidase M56; Region: Peptidase_M56;
                     pfam05569"
                     /db_xref="CDD:218642"
     gene            249067..250089
                     /locus_tag="CDBI1_00990"
                     /db_xref="GeneID:12215945"
     CDS             249067..250089
                     /locus_tag="CDBI1_00990"
                     /note="COG3103 SH3 domain protein"
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall hydrolase"
                     /protein_id="YP_006197366.1"
                     /db_xref="GI:384359514"
                     /db_xref="GeneID:12215945"
                     /translation="MKKKILIPVFASVMALSVSSIVNADEVNDSSQNKDDKTNTELNL
                     GEYKEVKYKVAKIKDGVAIKIREEGQVQNIAYSGDEFTVLGTQGEWVKVKVEDGEGWL
                     ATRYVDISEGVGYTNADKVNLRKDKSESSEVIEELEKGSSLLVLEDNGDWLKVKDGET
                     EGYVKSSYISDKAPVIEEPQVNPSIDQNVDSTNNNQQNNANTNQQNNNSNVPTANSNA
                     VQAVLNLAYSKQGCPYVWGAEGPNTFDCSGFTQYVYRNAVGKNIPRTSKAQSKYGQTV
                     SKANLQPGDLVFFTTNGSGSVSHVGIYVGGGNMIHSPSTGKTVSVTSINSSYYTARFV
                     TAKRIL"
     misc_feature    249067..>249624
                     /locus_tag="CDBI1_00990"
                     /note="SH3 domain protein [Signal transduction
                     mechanisms]; Region: COG3103"
                     /db_xref="CDD:225645"
     misc_feature    <249295..249387
                     /locus_tag="CDBI1_00990"
                     /note="Bacterial SH3 domain; Region: SH3_3; cl17532"
                     /db_xref="CDD:248086"
     misc_feature    249421..249576
                     /locus_tag="CDBI1_00990"
                     /note="Bacterial SH3 domain; Region: SH3_3; pfam08239"
                     /db_xref="CDD:116824"
     misc_feature    <249748..250068
                     /locus_tag="CDBI1_00990"
                     /note="Cell wall-associated hydrolases
                     (invasion-associated proteins) [Cell envelope biogenesis,
                     outer membrane]; Region: Spr; COG0791"
                     /db_xref="CDD:223862"
     misc_feature    249757..250080
                     /locus_tag="CDBI1_00990"
                     /note="NlpC/P60 family; Region: NLPC_P60; pfam00877"
                     /db_xref="CDD:189752"
     gene            250385..251305
                     /locus_tag="CDBI1_00995"
                     /db_xref="GeneID:12215946"
     CDS             250385..251305
                     /locus_tag="CDBI1_00995"
                     /note="'COG0540 Aspartate carbamoyltransferase, catalytic
                     chain'"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="YP_006197367.1"
                     /db_xref="GI:384359515"
                     /db_xref="GeneID:12215946"
                     /translation="MLKSRNLIQPEDFSIEEIDEILELAQKIIDNPSKYSRICEGKLL
                     ATLFYEPSTRTRLSFESAMNRLGGRVVGFSEPNSSSASKGETLGDTMRIVSGYVDIIA
                     MRHPQSGAASEAARYTEVPFINAGDGKNQHPTQTLTDLLTIKSLKGTLESHTIGLCGD
                     LKYGRTVHSLVKAMARYKNTKFVFIAPEELKMPDYIKEAIKGHAYYETNNLDDVIGSL
                     DVLYMTRVQQERFEDKSEYERLKNYYILNKAKLEKASKDMLVMHPLPRVNEIDIDVDS
                     DDRAVYFKQAKYGMYVRMALIIKLLGINED"
     misc_feature    250385..251299
                     /locus_tag="CDBI1_00995"
                     /note="aspartate carbamoyltransferase catalytic subunit;
                     Provisional; Region: pyrB; PRK00856"
                     /db_xref="CDD:234849"
     misc_feature    250397..250816
                     /locus_tag="CDBI1_00995"
                     /note="Aspartate/ornithine carbamoyltransferase,
                     carbamoyl-P binding domain; Region: OTCace_N; pfam02729"
                     /db_xref="CDD:217204"
     misc_feature    250844..251284
                     /locus_tag="CDBI1_00995"
                     /note="Aspartate/ornithine carbamoyltransferase, Asp/Orn
                     binding domain; Region: OTCace; pfam00185"
                     /db_xref="CDD:215776"
     gene            251344..252036
                     /locus_tag="CDBI1_01000"
                     /db_xref="GeneID:12215947"
     CDS             251344..252036
                     /locus_tag="CDBI1_01000"
                     /EC_number="1.3.5.2"
                     /note="COG0543 2-polyprenylphenol hydroxylase and related
                     flavodoxin oxidoreductases"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="YP_006197368.1"
                     /db_xref="GI:384359516"
                     /db_xref="GeneID:12215947"
                     /translation="MYKILENIYIGEDMYRMKVKGNFEGKMGQFYMLRAWDTYPVLSR
                     PISIHDIDEEGITFLYKVVGEGTQILSNLKVNDNIKLEGPYGNGYAKVDGKVALVGGG
                     IGVAPLYLVAKNIKNCDAYLGFREDVILEDEYKQVCNKVYTTVGNTFVTDIIDVEKYD
                     YILTCGPTPMMEKLVKMVEGTKTRIMVSLENHMACGVGACLVCTCKTNGGNKKTCKDG
                     PVFWGEDVIFNG"
     misc_feature    251344..252027
                     /locus_tag="CDBI1_01000"
                     /note="dihydroorotate dehydrogenase electron transfer
                     subunit; Reviewed; Region: PRK00054"
                     /db_xref="CDD:234601"
     misc_feature    251353..252009
                     /locus_tag="CDBI1_01000"
                     /note="FAD/NAD binding domain in the electron transfer
                     subunit of dihydroorotate dehydrogenase. Dihydroorotate
                     dehydrogenases (DHODs) catalyze the only redox reaction in
                     pyrimidine de novo biosynthesis. They catalyze the
                     oxidation of (S)-dihydroorotate to...; Region:
                     DHOD_e_trans; cd06218"
                     /db_xref="CDD:99814"
     misc_feature    order(251467..251469,251473..251484,251518..251526,
                     251542..251550,251650..251652,251914..251919)
                     /locus_tag="CDBI1_01000"
                     /note="FAD binding pocket [chemical binding]; other site"
                     /db_xref="CDD:99814"
     misc_feature    order(251473..251475,251479..251484)
                     /locus_tag="CDBI1_01000"
                     /note="FAD binding motif [chemical binding]; other site"
                     /db_xref="CDD:99814"
     misc_feature    order(251539..251541,251548..251550,251557..251559,
                     251569..251571,251593..251595,251599..251601)
                     /locus_tag="CDBI1_01000"
                     /note="phosphate binding motif [ion binding]; other site"
                     /db_xref="CDD:99814"
     misc_feature    order(251635..251637,251647..251658,251662..251664)
                     /locus_tag="CDBI1_01000"
                     /note="beta-alpha-beta structure motif; other site"
                     /db_xref="CDD:99814"
     misc_feature    order(251650..251655,251710..251718,251839..251844)
                     /locus_tag="CDBI1_01000"
                     /note="NAD binding pocket [chemical binding]; other site"
                     /db_xref="CDD:99814"
     misc_feature    order(251926..251928,251941..251943,251950..251952,
                     251986..251988)
                     /locus_tag="CDBI1_01000"
                     /note="Iron coordination center [ion binding]; other site"
                     /db_xref="CDD:99814"
     gene            252029..252931
                     /locus_tag="CDBI1_01005"
                     /db_xref="GeneID:12215948"
     CDS             252029..252931
                     /locus_tag="CDBI1_01005"
                     /EC_number="1.3.98.1"
                     /note="COG0167 Dihydroorotate dehydrogenase"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase 1B"
                     /protein_id="YP_006197369.1"
                     /db_xref="GI:384359517"
                     /db_xref="GeneID:12215948"
                     /translation="MGNLSVKFGSVEFKNPVIMASGTFGFGKEYNEIYDIQKLGGISS
                     KGLTLNKKPGNNGMRVHETPSGMMNSVGLENPGVQGFIDYELPFFSKLDLVRIANVGG
                     GTLEDYLLGVQMLNDKPIDIIELNISCPNVKAGGMAFGIKNEVAREVVREVRNITKLP
                     LVIKLSPNAEDIVGMAKVCEEEGADGVSLVNTFKAMAIDIKNRRPVFENVYAGLSGPA
                     IKPIALRMVHEVCKNVNIPVMGMGGITKATDAIEFIMAGATCIQVGTANFMNPRIGIE
                     IIDGINEFMDREGIKSLDEIRGII"
     misc_feature    252038..252925
                     /locus_tag="CDBI1_01005"
                     /note="dihydroorotate dehydrogenase (subfamily 1) family
                     protein; Region: pyrD_sub1_fam; TIGR01037"
                     /db_xref="CDD:130109"
     misc_feature    252041..252928
                     /locus_tag="CDBI1_01005"
                     /note="Dihydroorotate dehydrogenase (DHOD) class 1B
                     FMN-binding domain. DHOD catalyzes the oxidation of
                     (S)-dihydroorotate to orotate. This is the fourth step and
                     the only redox reaction in the de novo biosynthesis of
                     UMP, the precursor of all pyrimidine...; Region:
                     DHOD_1B_like; cd04740"
                     /db_xref="CDD:240091"
     misc_feature    order(252113..252118,252125..252127,252161..252163,
                     252185..252187,252203..252208,252212..252214,
                     252248..252250,252677..252679,252833..252835,
                     252839..252844)
                     /locus_tag="CDBI1_01005"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240091"
     misc_feature    order(252164..252166,252233..252235,252404..252406,
                     252413..252415,252518..252520,252596..252604,
                     252674..252676,252755..252757,252818..252823)
                     /locus_tag="CDBI1_01005"
                     /note="active site"
                     /db_xref="CDD:240091"
     misc_feature    order(252164..252166,252233..252235,252404..252406,
                     252518..252520,252596..252601,252674..252676,
                     252755..252757,252818..252823)
                     /locus_tag="CDBI1_01005"
                     /note="FMN binding site [chemical binding]; other site"
                     /db_xref="CDD:240091"
     misc_feature    order(252215..252223,252449..252451,252533..252535,
                     252608..252628,252635..252643,252677..252679,
                     252686..252694,252698..252703,252782..252784,
                     252791..252796,252914..252916,252923..252925)
                     /locus_tag="CDBI1_01005"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240091"
     misc_feature    order(252233..252235,252404..252406,252410..252412,
                     252599..252604)
                     /locus_tag="CDBI1_01005"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:240091"
     gene            253016..253600
                     /gene="pyrE"
                     /locus_tag="CDBI1_01010"
                     /db_xref="GeneID:12215949"
     CDS             253016..253600
                     /gene="pyrE"
                     /locus_tag="CDBI1_01010"
                     /EC_number="2.4.2.10"
                     /note="COG0461 Orotate phosphoribosyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="YP_006197370.1"
                     /db_xref="GI:384359518"
                     /db_xref="GeneID:12215949"
                     /translation="MSKVDVVDILKKSDALLEGHFLLSSGKHSNRYVQCAKVLRFPEY
                     AAEVLSTVVEQIKDLDIDLVVGPAMGGVIVSYELGRQLGKEAVFTERKDNTMELRRGF
                     EVKKGAKIIIAEDVVTTGKSTMETKRVLEALGGEVVGVACIADRTNHDIGMPIYSAIK
                     LDIQVYESDECPLCKEGKLPVVKPGSREFKELGM"
     misc_feature    253169..>253399
                     /gene="pyrE"
                     /locus_tag="CDBI1_01010"
                     /note="Phosphoribosyl transferase (PRT)-type I domain;
                     Region: PRTases_typeI; cd06223"
                     /db_xref="CDD:206754"
     misc_feature    order(253217..253219,253223..253225,253355..253363,
                     253367..253381)
                     /gene="pyrE"
                     /locus_tag="CDBI1_01010"
                     /note="active site"
                     /db_xref="CDD:206754"
     gene            253815..254741
                     /locus_tag="CDBI1_01015"
                     /db_xref="GeneID:12215950"
     CDS             253815..254741
                     /locus_tag="CDBI1_01015"
                     /note="COG1893 Ketopantoate reductase"
                     /codon_start=1
                     /transl_table=11
                     /product="putative ketopantoate reductase"
                     /protein_id="YP_006197371.1"
                     /db_xref="GI:384359519"
                     /db_xref="GeneID:12215950"
                     /translation="MKNQLNENHKKVVFFGVGAVGATFAEQFFNSKYDFKILCDNERK
                     KRYLEEGFIINGKRYDFNYVTKDEYKQEADFIIIGLKYNNLKENIKELDGLVGKNTVI
                     MSLLNGVDSEEIIGERFGIGKMVYSYVTNIDAKKINNNIIHTTNGIIVFGNKDNSEDR
                     KTNIITEVFDDVNIEYILSKDIQRDMWWKYMVNIGVNQTSAILGAPYGVFQSSEHLRE
                     LAKSAMREVVAIAQAKDISLTEDDVENSLHRILEHSKEGRTSMLQDVEAHRPTEVDMF
                     SKNICKLGKKYSIPTPINQTLFYMIKVIESRF"
     misc_feature    253911..254735
                     /locus_tag="CDBI1_01015"
                     /note="2-dehydropantoate 2-reductase; Region: apbA_panE;
                     TIGR00745"
                     /db_xref="CDD:233111"
     misc_feature    253935..254204
                     /locus_tag="CDBI1_01015"
                     /note="Ketopantoate reductase PanE/ApbA; Region: ApbA;
                     pfam02558"
                     /db_xref="CDD:217105"
     misc_feature    254355..254729
                     /locus_tag="CDBI1_01015"
                     /note="Ketopantoate reductase PanE/ApbA C terminal;
                     Region: ApbA_C; pfam08546"
                     /db_xref="CDD:219895"
     gene            complement(254793..255683)
                     /locus_tag="CDBI1_01020"
                     /db_xref="GeneID:12215951"
     CDS             complement(254793..255683)
                     /locus_tag="CDBI1_01020"
                     /note="COG0583 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="YP_006197372.1"
                     /db_xref="GI:384359520"
                     /db_xref="GeneID:12215951"
                     /translation="MFEELKTFVAVVEYKNFTKAGEYLNLSQPSVSKHIKNLENYFKV
                     VLINRSIKQKTIFITESGQILYKRAKEILNLLNITYHDVSQVSDAITGHLKIGASLTI
                     GEYILPNFLALFSQKYPDIYVEVFIKNTSIVSSHVKDYILDIGLIEGTCSSPSFIQEY
                     FFEDKMVLALPYNSHLLKDFSFDKLQDQKWIVREDGSGTRDYLDMFLSVKEIIPKSMM
                     VFGSNYAVKESVRNNLGITIVSNLVTSLPVLNNELSVIELGSSYNRHFSYIFPKDITL
                     SKAATIFIEELKIFSNLNSI"
     misc_feature    complement(254820..255683)
                     /locus_tag="CDBI1_01020"
                     /note="Transcriptional regulator [Transcription]; Region:
                     LysR; COG0583"
                     /db_xref="CDD:223656"
     misc_feature    complement(255495..255680)
                     /locus_tag="CDBI1_01020"
                     /note="Bacterial regulatory helix-turn-helix protein, lysR
                     family; Region: HTH_1; pfam00126"
                     /db_xref="CDD:215735"
     misc_feature    complement(254823..255407)
                     /locus_tag="CDBI1_01020"
                     /note="C-terminal substrate binding domain of LysR-type
                     transcriptional regulator CysL, which activates the
                     transcription of the cysJI operon encoding sulfite
                     reductase, contains the type 2 periplasmic binding fold;
                     Region: PBP2_CysL_like; cd08420"
                     /db_xref="CDD:176112"
     misc_feature    complement(order(254988..254993,254997..255002,
                     255018..255035,255303..255323,255327..255329,
                     255339..255341,255348..255353,255357..255362))
                     /locus_tag="CDBI1_01020"
                     /note="putative dimerization interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:176112"
     gene            255893..256903
                     /locus_tag="CDBI1_01025"
                     /db_xref="GeneID:12215952"
     CDS             255893..256903
                     /locus_tag="CDBI1_01025"
                     /note="COG2855 Predicted membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197373.1"
                     /db_xref="GI:384359521"
                     /db_xref="GeneID:12215952"
                     /translation="MTLKTIREILPGLFISVLVGYISIFISILIPKVGAASISIFLGM
                     FVGNLFLNQKVFQKGYKFSETDLLSYSIVLLGATLSVSTLIDLKVSGILFIILQMTIT
                     IIAALYIGKKLGFEENFRFLMASGNAVCGSSAIGAIVPVVNATDKEKGIAVTIVNVTG
                     IFLMFLLPIISQFLYSHELVKTSAMIGGTLQSIGQVVASGAIVGENVKDLATIFKIVR
                     VIFLVVVVLVFGHMKNQSNREILEEEKDEIKKKKVTIPWYVIGFFITCALFSMNIIPK
                     EVSVLCKEISNKLEIIALAAIGLKVNVKDLVKQGKEVSLYGLFVGTVQVVSAVVLIKI
                     FI"
     misc_feature    255893..256900
                     /locus_tag="CDBI1_01025"
                     /note="Predicted membrane protein [Function unknown];
                     Region: COG2855"
                     /db_xref="CDD:225411"
     gene            257197..258072
                     /locus_tag="CDBI1_01030"
                     /db_xref="GeneID:12215953"
     CDS             257197..258072
                     /locus_tag="CDBI1_01030"
                     /note="COG0122 3-methyladenine DNA
                     glycosylase/8-oxoguanine DNA glycosylase"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="YP_006197374.1"
                     /db_xref="GI:384359522"
                     /db_xref="GeneID:12215953"
                     /translation="MNVYEKGNGVILEGVTDFDPVHIFECGQCFRWHKQEDGSYTGVA
                     RGRILNVKKENDKIYLNNTNLKEFNSIWYNYFDLGTDYTEIKNKLKNMDEYLNKATEF
                     GWGIRILRQDGWEMLISFIISSNNRIPMIQRAIENLSRKFGKYIGEYEGNEYYAFPTP
                     EELNKASQEEIRACQTGFRDKYIKSTTQAVIENNDEVSEYTNLSTEDCRKELLKFNGV
                     GPKVCDCIALFGMQKYDSFPVDVWVKRVMQEFYIDEDMSLPKMRTYGIDKFKEMSGFA
                     QQYLFYYARELGIGK"
     misc_feature    257224..257547
                     /locus_tag="CDBI1_01030"
                     /note="8-oxoguanine DNA glycosylase, N-terminal domain;
                     Region: OGG_N; pfam07934"
                     /db_xref="CDD:219650"
     misc_feature    257239..258051
                     /locus_tag="CDBI1_01030"
                     /note="8-oxoguanine DNA-glycosylase (ogg); Region: ogg;
                     TIGR00588"
                     /db_xref="CDD:211589"
     misc_feature    257536..258045
                     /locus_tag="CDBI1_01030"
                     /note="endonuclease III; includes endonuclease III
                     (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
                     glycosidases (Alka-family) and other DNA glycosidases;
                     Region: ENDO3c; cd00056"
                     /db_xref="CDD:238013"
     misc_feature    order(257569..257577,257584..257586,257731..257733)
                     /locus_tag="CDBI1_01030"
                     /note="minor groove reading motif; other site"
                     /db_xref="CDD:238013"
     misc_feature    257839..257862
                     /locus_tag="CDBI1_01030"
                     /note="helix-hairpin-helix signature motif; other site"
                     /db_xref="CDD:238013"
     misc_feature    order(257869..257871,258025..258027,258037..258039)
                     /locus_tag="CDBI1_01030"
                     /note="substrate binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:238013"
     misc_feature    257914..257916
                     /locus_tag="CDBI1_01030"
                     /note="active site"
                     /db_xref="CDD:238013"
     gene            258090..259580
                     /locus_tag="CDBI1_01035"
                     /db_xref="GeneID:12215954"
     CDS             258090..259580
                     /locus_tag="CDBI1_01035"
                     /note="COG1502
                     Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi
                     n synthases and related enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthetase"
                     /protein_id="YP_006197375.1"
                     /db_xref="GI:384359523"
                     /db_xref="GeneID:12215954"
                     /translation="MGVIGTIFLFYLIISYLAGAIISVIILLENRDPAKTMSWLLMFI
                     IFPGVGLMIYAISGRNIRKRKLFKTQKLANNIKEKKLFDTLEKITEIVELEKESIKQN
                     KLLRDEEDGSYRKRVINMLLKTGMFPFTKNNKVDVFVDGNEKFKRLIEDIREAKDHIH
                     LEYFIIKDSEIGRVLKEELIKKAKEGIKIRILYDDVGCWRFWFNRKFFREMREVGIEI
                     AAFLPTKFPIIGGKLNYRNHRKIVVIDGIIGYTGGINIGDEYLGKNDKFGYWRDTHIR
                     IKGISVYMLQMTFLIDWYYTTKEVLVTKNYFPSVGNVGESMIQVVASGPDSDWEDIHY
                     AYFSAICQARKNVYIETPYFIPDESLLKAIKSAALSGVDVRIIFPKIADHKIVNIASY
                     SYFEEILRAGGKVYLYNKGFIHSKVVIIDDKIASAGTANMDLRSFMLNFEVNAFIYDE
                     EVIRVMTDDFFEDLSHCEELNLEVFKNRNIIQKIKESVARLFSPIL"
     misc_feature    258099..259577
                     /locus_tag="CDBI1_01035"
                     /note="cardiolipin synthetase; Reviewed; Region: cls;
                     PRK01642"
                     /db_xref="CDD:234967"
     misc_feature    258135..258269
                     /locus_tag="CDBI1_01035"
                     /note="Phospholipase_D-nuclease N-terminal; Region:
                     PLDc_N; pfam13396"
                     /db_xref="CDD:222100"
     misc_feature    258504..258971
                     /locus_tag="CDBI1_01035"
                     /note="Catalytic domain, repeat 1, of bacterial
                     cardiolipin synthase and similar proteins; Region:
                     PLDc_CLS_1; cd09110"
                     /db_xref="CDD:197209"
     misc_feature    order(258801..258803,258807..258809,258846..258848,
                     258852..258854,258903..258905)
                     /locus_tag="CDBI1_01035"
                     /note="putative active site [active]"
                     /db_xref="CDD:197209"
     misc_feature    258801..258803
                     /locus_tag="CDBI1_01035"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197209"
     misc_feature    259050..259571
                     /locus_tag="CDBI1_01035"
                     /note="catalytic domain repeat 2 of bacterial cardiolipin
                     synthase and similar proteins; Region: PLDc_CLS_2;
                     cd09112"
                     /db_xref="CDD:197211"
     misc_feature    order(259329..259331,259335..259337,259374..259376,
                     259380..259382,259413..259415)
                     /locus_tag="CDBI1_01035"
                     /note="putative active site [active]"
                     /db_xref="CDD:197211"
     misc_feature    259329..259331
                     /locus_tag="CDBI1_01035"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197211"
     gene            259773..260057
                     /locus_tag="CDBI1_01040"
                     /db_xref="GeneID:12215955"
     CDS             259773..260057
                     /locus_tag="CDBI1_01040"
                     /note="COG0234 Co-chaperonin GroES (HSP10)"
                     /codon_start=1
                     /transl_table=11
                     /product="10 kDa chaperonin"
                     /protein_id="YP_006197376.1"
                     /db_xref="GI:384359524"
                     /db_xref="GeneID:12215955"
                     /translation="MKIRPLADRVVIKKVEAEEKTASGIVLPGAAKEQPQIAEVVEVG
                     PGGIVEGKEIKMELTVGDKVIFQKYSGTEVKIEGQEYTILRQSDVLAVIE"
     misc_feature    259776..260051
                     /locus_tag="CDBI1_01040"
                     /note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
                     cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
                     to assist the folding and assembly of proteins and is
                     found in eubacterial cytosol, as well as in the matrix of
                     mitochondria and chloroplasts. It...; Region: cpn10;
                     cd00320"
                     /db_xref="CDD:238197"
     misc_feature    order(259776..259778,259782..259784,259788..259790,
                     259797..259799,259878..259883,259941..259943,
                     259971..259973,259986..259988,259992..259994,
                     260040..260048)
                     /locus_tag="CDBI1_01040"
                     /note="oligomerisation interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238197"
     misc_feature    259824..259865
                     /locus_tag="CDBI1_01040"
                     /note="mobile loop; other site"
                     /db_xref="CDD:238197"
     misc_feature    order(259902..259904,259935..259937)
                     /locus_tag="CDBI1_01040"
                     /note="roof hairpin; other site"
                     /db_xref="CDD:238197"
     gene            260090..261718
                     /locus_tag="CDBI1_01045"
                     /db_xref="GeneID:12215956"
     CDS             260090..261718
                     /locus_tag="CDBI1_01045"
                     /note="COG0459 Chaperonin GroEL (HSP60 family)"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="YP_006197377.1"
                     /db_xref="GI:384359525"
                     /db_xref="GeneID:12215956"
                     /translation="MAKEIKFSEETRRALEAGVNKLADTVKVTLGPKGRNVILDKKFG
                     SPLITNDGVTIAKEIELEDRFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREG
                     LKNVTAGANPILLRKGIQKAVIVAVEELKNQSRIVETQEAISQVASISAGDEEVGKLI
                     AEAMEIVGKDGVITVEESQTMNTELDAVEGMQFDRGFVSAYMVTDVDKMEAVLNDPYI
                     LITDKKISNIQELLPVLEQIVQQGKKLLIIAEDVEGEALSTLVVNKLRGTFDVVAVKA
                     PGFGDRRKEMLQDIAILTGAQVISEELGYDLKEADLSMLGRASSVKVTKESTTIVDGS
                     GDKKAIEDRVTQIKHQVEQTTSDFDREKLMERLAKLAGGVAVVKVGAATEVELKERKL
                     RIEDALNATRAAVEEGIVAGGGTAFVSVIPAIGTLIESLEGEVKLGAQIVKKALEEPL
                     RQIAINAGLEGAVIVQNVVNSEAETGFDALNEKYVNMIEAGIVDPTKVSRSALQNAAS
                     IASTFLTTEAAVADLPEKEDAGMPGMGGGMPGMM"
     misc_feature    260090..261676
                     /locus_tag="CDBI1_01045"
                     /note="chaperonin GroEL; Reviewed; Region: groEL;
                     PRK12849"
                     /db_xref="CDD:237230"
     misc_feature    260096..261655
                     /locus_tag="CDBI1_01045"
                     /note="GroEL_like type I chaperonin. Chaperonins are
                     involved in productive folding of proteins. They share a
                     common general morphology, a double toroid of 2 stacked
                     rings, each composed of 7-9 subunits. The symmetry of type
                     I is seven-fold and they are found...; Region: GroEL;
                     cd03344"
                     /db_xref="CDD:239460"
     misc_feature    order(260096..260098,260108..260110,260159..260161,
                     260192..260203,260207..260209,260222..260227,
                     260231..260233,260261..260263,260267..260269,
                     260291..260293,260303..260305,260312..260314,
                     260672..260674,260768..260770,260852..260854,
                     261233..261235,261239..261241,261461..261463,
                     261623..261625,261632..261652)
                     /locus_tag="CDBI1_01045"
                     /note="ring oligomerisation interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239460"
     misc_feature    order(260177..260185,260345..260347,260357..260359,
                     260534..260536,261275..261277,261326..261328,
                     261446..261448,261563..261565,261569..261571)
                     /locus_tag="CDBI1_01045"
                     /note="ATP/Mg binding site [chemical binding]; other site"
                     /db_xref="CDD:239460"
     misc_feature    order(260411..260413,261386..261388,261440..261442,
                     261467..261469,261473..261478,261485..261487)
                     /locus_tag="CDBI1_01045"
                     /note="stacking interactions; other site"
                     /db_xref="CDD:239460"
     misc_feature    order(260507..260509,260639..260641,260660..260662,
                     261206..261208,261308..261313)
                     /locus_tag="CDBI1_01045"
                     /note="hinge regions; other site"
                     /db_xref="CDD:239460"
     gene            261980..262720
                     /locus_tag="CDBI1_01050"
                     /db_xref="GeneID:12215957"
     CDS             261980..262720
                     /locus_tag="CDBI1_01050"
                     /note="COG1691 NCAIR mutase (PurE)-related proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197378.1"
                     /db_xref="GI:384359526"
                     /db_xref="GeneID:12215957"
                     /translation="MDLRKLLEEVKNENIDIDFALEKLKDLPYEDLGYANIDHHRELR
                     NGYPEVIYCEGKSDEHILGIIDKMNQKSSNILGTRCRKETFLKIKEIYNHAEYEEASK
                     ILKIQNHDIENIGKGKIVIATGGTSDIPVADEAYHTAKFLGNDVDRIYDVGVAGIHRL
                     LNKRHKIDSARVIVAVAGMEGALASVIGGLVDVPVIAVPTSVGYGANFGGLAALLAML
                     NSCASGISVVNIDNGFGAGYLASMINKL"
     misc_feature    261980..262717
                     /locus_tag="CDBI1_01050"
                     /note="NCAIR mutase (PurE)-related proteins [General
                     function prediction only]; Region: COG1691"
                     /db_xref="CDD:224605"
     misc_feature    262328..262708
                     /locus_tag="CDBI1_01050"
                     /note="AIR carboxylase; Region: AIRC; smart01001"
                     /db_xref="CDD:214965"
     gene            262804..263538
                     /locus_tag="CDBI1_01055"
                     /db_xref="GeneID:12215958"
     CDS             262804..263538
                     /locus_tag="CDBI1_01055"
                     /note="COG1641 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197379.1"
                     /db_xref="GI:384359527"
                     /db_xref="GeneID:12215958"
                     /translation="MSEKILYFDIISGISGDMTLASLLNLGVPKEIFLEEIHKLRMSD
                     EFNINISSKTENGIVGTKVEVITKEKHTHRNLVDIFEVIDKSTLNENVKSKAKKIFMV
                     IGEAEAKVHGTTIDKIHFHEVGAIDSIVDIVGASILVDLLCVDKVCASTVSVGSGFVK
                     CEHGIIPIPAPATIEILKGVPIKLNNVNGECTTPTGAAIIKVLCDEFVDELEFSPKQI
                     GYGIGHKKFEVPNILRTVLGEKKKKN"
     misc_feature    262813..>263520
                     /locus_tag="CDBI1_01055"
                     /note="Protein of unknown function DUF111; Region: DUF111;
                     cl03398"
                     /db_xref="CDD:243413"
     gene            263592..263987
                     /locus_tag="CDBI1_01060"
                     /db_xref="GeneID:12215959"
     CDS             263592..263987
                     /locus_tag="CDBI1_01060"
                     /note="COG1641 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197380.1"
                     /db_xref="GI:384359528"
                     /db_xref="GeneID:12215959"
                     /translation="MYEKILDEKALDIYTESIYMKKNRPATKVSILCNESDLEKFIKI
                     LLLETSTFGVRYNAYNREILERKFVKLDTKYGVVTVKLGYYKGKLVKVTPEYNECKTI
                     AKNEDIPIKKVFADINFRIKEEFSENLLT"
     misc_feature    <263598..263930
                     /locus_tag="CDBI1_01060"
                     /note="Protein of unknown function DUF111; Region: DUF111;
                     cl03398"
                     /db_xref="CDD:243413"
     gene            264369..265904
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /db_xref="GeneID:12215960"
     CDS             264369..265904
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /EC_number="6.3.5.2"
                     /note="COG0518 GMP synthase - Glutamine amidotransferase
                     domain"
                     /codon_start=1
                     /transl_table=11
                     /product="GMP synthase"
                     /protein_id="YP_006197381.1"
                     /db_xref="GI:384359529"
                     /db_xref="GeneID:12215960"
                     /translation="MKHELVLVIDFGGQYNQLIARRVRENNVYCEILPCTASIERIKE
                     KNPKGIIFTGGPNSAYLEDSPTISKEIFELGVPILGICYGIQIMSHVLGGVVRKGNKQ
                     EKEYGKTSITYGKSSLFEGITTNSVWMSHTDLIEKVPEGFTIVANTNDCPVAAMENVE
                     RNLYGVQFHPEVEHCLEGDKILTNFLYNICKVKGDWTTDSFIEDKIKELKEKIGDKKA
                     LCALSGGVDSSVAAVLIHKAIGDNLTCIFVDHGLLRKNEGNDVERIFREKFDINLIRV
                     NAEDRFLSKLKGVSEPEAKRKIIGEEFIRVFEEESNKLGKMDFLVQGTIYPDVIESGH
                     GNAATIKSHHNVGGIPEDVDFQEIVEPLRELFKDEVRKIGLELGIEEGLIFRHPFPGP
                     GLGIRVIGDVTKEKCDILREADAVYMDELRKAGLYREIWQAFATLPDVKTVGVMGDER
                     TYAYLVGLRAVTSSDGMTSDWYKMPYDVLERISNRIINEVDGVNRVVYDITSKPPGTI
                     EWE"
     misc_feature    264369..265901
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /note="GMP synthase; Reviewed; Region: guaA; PRK00074"
                     /db_xref="CDD:234614"
     misc_feature    264384..264926
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /note="Type 1 glutamine amidotransferase (GATase1) domain
                     found in GMP synthetase; Region: GATase1_GMP_Synthase;
                     cd01742"
                     /db_xref="CDD:153213"
     misc_feature    order(264405..264410,264528..264536,264612..264617,
                     264756..264758,264873..264875)
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /note="AMP/PPi binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:153213"
     misc_feature    order(264531..264533,264615..264617)
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /note="candidate oxyanion hole; other site"
                     /db_xref="CDD:153213"
     misc_feature    order(264612..264614,264873..264875,264879..264881)
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:153213"
     misc_feature    order(264624..264626,264759..264761,264867..264869)
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /note="potential glutamine specificity residues [chemical
                     binding]; other site"
                     /db_xref="CDD:153213"
     misc_feature    265020..265898
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /note="The C-terminal domain of GMP synthetase. It
                     contains two subdomains; the ATP pyrophosphatase domain
                     which closes to the N-termial and the dimerization domain
                     at C-terminal end. The ATP-PPase is a twisted,
                     five-stranded parallel beta-sheet sandwiched...; Region:
                     GMP_synthase_C; cd01997"
                     /db_xref="CDD:238955"
     misc_feature    order(265020..265091,265095..265127,265131..265163,
                     265194..265307,265323..265367,265389..265418,
                     265431..265433,265437..265508,265524..265568)
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /note="ATP Binding subdomain [chemical binding]; other
                     site"
                     /db_xref="CDD:238955"
     misc_feature    order(265029..265037,265041..265052,265104..265106,
                     265110..265112,265467..265469)
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /note="Ligand Binding sites [chemical binding]; other
                     site"
                     /db_xref="CDD:238955"
     misc_feature    order(265593..265631,265656..265685,265692..265724,
                     265734..265781,265800..265826,265830..265898)
                     /gene="guaA"
                     /locus_tag="CDBI1_01065"
                     /note="Dimerization subdomain; other site"
                     /db_xref="CDD:238955"
     gene            266443..267873
                     /locus_tag="CDBI1_01070"
                     /db_xref="GeneID:12215961"
     CDS             266443..267873
                     /locus_tag="CDBI1_01070"
                     /note="'COG0737 5'-nucleotidase/2',3'-cyclic
                     phosphodiesterase and related esterases'"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-associated nucleotidase"
                     /protein_id="YP_006197382.1"
                     /db_xref="GI:384359530"
                     /db_xref="GeneID:12215961"
                     /translation="MILNQIFIEDGGIMRNKIIIGITFSLVLLMSGCASKQTAEINVL
                     ATTDLHGVIPYELTSYVKEERKKDKNLTLVDAGDFFDSGEVFGSSMDSYFSARYKDGD
                     NNTESYIETPISKDMKEVGYDVAVLGNHEFISNNKFYLDNMISDFEKQKINILSANTY
                     KKNGDSYTKPYIIKNINTPEGNVKLGILGLTIKEVGERKQWKDGKLVDSKSLELKDQE
                     GYNGELYMNDLVEDAKKWVGIMEKEKPDIIVAVAHTGEKPKKPRNPGNRIQDLAQQVD
                     GIDAIVAGHNHVQIEQHDYKNKSGENVIVTEPGKHGEYISKINFKLEKNNDKWNIVDK
                     SSKLIKFEKNQESDKFGEFISSINKVSKDKKEIRLSEVKTPEWDKIYVFKSGTSADDI
                     YKTIGYKWRNISSPKGDDMVQIVVMNNNKPVSYIYGEAEVMPINIKCDESEYKNNVVT
                     IYPNKNDKFKIEKGKQEYSINLKHIQ"
     misc_feature    266563..267459
                     /locus_tag="CDBI1_01070"
                     /note="metallophosphatase superfamily, metallophosphatase
                     domain; Region: MPP_superfamily; cl13995"
                     /db_xref="CDD:246597"
     misc_feature    266569..267309
                     /locus_tag="CDBI1_01070"
                     /note="Calcineurin-like phosphoesterase; Region:
                     Metallophos; pfam00149"
                     /db_xref="CDD:215750"
     misc_feature    order(266584..266586,266590..266592,266674..266676,
                     266827..266832,267199..267201,267295..267297)
                     /locus_tag="CDBI1_01070"
                     /note="active site"
                     /db_xref="CDD:163614"
     misc_feature    order(266584..266586,266590..266592,266674..266676,
                     266827..266829,267199..267201,267295..267297)
                     /locus_tag="CDBI1_01070"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:163614"
     gene            complement(268021..268896)
                     /locus_tag="CDBI1_01075"
                     /db_xref="GeneID:12215962"
     CDS             complement(268021..268896)
                     /locus_tag="CDBI1_01075"
                     /note="COG0583 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197383.1"
                     /db_xref="GI:384359531"
                     /db_xref="GeneID:12215962"
                     /translation="MINIRYLEILEAIEQTGTFTGAAKKLHITQSAVSHAIAELEQQA
                     ETSLFDRLPRGVCLTRCGISLLDEARSILTACRNLDKKISRLEECTPINIVSSITIAS
                     FLLPPILSRLKNSFPSLKVNVRVESANSAMDILKSGEADICFWEGIEPQGAFRTILLG
                     SYKLCVACAPTFPLSEQTLSLRQLCTFPLLLREQGSAIRDTLDSVLSLSNQKAYPVWE
                     SVNSFALIKAAEAGLGITILPENLLLDSLLHKKLRLIELDEIDMENKMLAILHKDKNI
                     TQPLEIILDNISNVL"
     misc_feature    complement(268024..268893)
                     /locus_tag="CDBI1_01075"
                     /note="Transcriptional regulator [Transcription]; Region:
                     LysR; COG0583"
                     /db_xref="CDD:223656"
     misc_feature    complement(268711..268887)
                     /locus_tag="CDBI1_01075"
                     /note="Bacterial regulatory helix-turn-helix protein, lysR
                     family; Region: HTH_1; pfam00126"
                     /db_xref="CDD:215735"
     misc_feature    complement(268042..268623)
                     /locus_tag="CDBI1_01075"
                     /note="LysR substrate binding domain; Region:
                     LysR_substrate; pfam03466"
                     /db_xref="CDD:217576"
     misc_feature    complement(order(268204..268209,268213..268218,
                     268234..268251,268522..268542,268546..268548,
                     268558..268560,268567..268572,268576..268581))
                     /locus_tag="CDBI1_01075"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:176102"
     gene            269016..269579
                     /locus_tag="CDBI1_01080"
                     /db_xref="GeneID:12215963"
     CDS             269016..269579
                     /locus_tag="CDBI1_01080"
                     /note="COG2059 Chromate transport protein ChrA"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197384.1"
                     /db_xref="GI:384359532"
                     /db_xref="GeneID:12215963"
                     /translation="MNQSRKIYFWLLIINLFISTFTFGGGYVVVPMIRRYFVNQKQFF
                     TEDDLMSMAAVAQSTPGAIAINLSALAGYRVAGTLGVVISCTAAIIPPLVILGLVSAF
                     YTTFISNAIVTAVLKGMQAGVAALIVDLIIDMCSMILKQRSLFLSTMIPIAFFANFVM
                     SINVIFILSVCCFVCVMQVFYKKRENK"
     misc_feature    269034..269528
                     /locus_tag="CDBI1_01080"
                     /note="Chromate transporter; Region: Chromate_transp;
                     pfam02417"
                     /db_xref="CDD:217024"
     gene            269576..270142
                     /locus_tag="CDBI1_01085"
                     /db_xref="GeneID:12215964"
     CDS             269576..270142
                     /locus_tag="CDBI1_01085"
                     /note="COG2059 Chromate transport protein ChrA"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="YP_006197385.1"
                     /db_xref="GI:384359533"
                     /db_xref="GeneID:12215964"
                     /translation="MNTIWNLFFIFLKIGLFSIGGGYAIIPLIQEKVVNQTGWISEKM
                     FTDIITISQMTPGPLAVNTSTFVGLQIGGFWGAVAATLGCVLCGVVISLFLYNFFQKH
                     QNSTYIFEILNGLKSASLGLIISAAATIIILALFGTNKVYFNSIFEMLNWTALIIFFV
                     ILLIVRKWKINPIVIIIISGILGIFFYL"
     misc_feature    269582..>269917
                     /locus_tag="CDBI1_01085"
                     /note="Chromate transporter; Region: Chromate_transp;
                     pfam02417"
                     /db_xref="CDD:217024"
     gene            complement(270271..270507)
                     /locus_tag="CDBI1_01090"
                     /db_xref="GeneID:12215965"
     CDS             complement(270271..270507)
                     /locus_tag="CDBI1_01090"
                     /note="COG2267 Lysophospholipase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197386.1"
                     /db_xref="GI:384359534"
                     /db_xref="GeneID:12215965"
                     /translation="MLECFIAEDSKIKDGVNIPTLVFKTLHDRYFKTQYFDSYYNSLK
                     CKKKLVEINNVHNSYYIDSEKFCQEAYDWFVENQ"
     gene            complement(270817..274245)
                     /locus_tag="CDBI1_01095"
                     /db_xref="GeneID:12215966"
     CDS             complement(270817..274245)
                     /locus_tag="CDBI1_01095"
                     /note="COG0178 Excinuclease ATPase subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
                     /protein_id="YP_006197387.1"
                     /db_xref="GI:384359535"
                     /db_xref="GeneID:12215966"
                     /translation="MKINNYKNQSIITNPKKFENKYQDLPKTPIELLKVVQSLVIHGD
                     QGKLYGISFNKQQSDEELLRTIPQMLKRIFEINSNPLTIPRNPKQRLVGMCRDYSLLL
                     VSLLRYRGFEARMRAGFANYFENELTYEDHWLVEYYDTLTKRWIRIDAQIDDIQKNYF
                     QINFDTHDVGKTDGFLTGSEAWIRCRQGHAHPDDFGYNKNWKGWHSVKGNLLHDFNNM
                     IGLELLPWDLWTELSSKKYNQLTRAEKNLLDEMAEILSSGNIKIEDLNLLIEKLPEDY
                     LKSIFSQLKILGISEIKELGNPLELEKKFKFAKAINKSIKNSLCHNKSSIYLKGGRQN
                     NLKDVEVTIPKNQITVITGVSGSGKSSLAFDTIYEEGKRRYFENLGNGAKLSEQLQKP
                     EFDLLQGLTPTIAIEQKKGSQNPRSTVGTLTSIWDYLRMLFVSIGKSYCPYCKTPLEK
                     KNNTKNYCPHCQTIFSKINTSTFNANSHTGACHDCNGLGFTYQVNPQLIVKDPTISIL
                     DGATYYFGKLRGKKPNGNWMVGELYAIAKDKNIDLDIPWNELPRDFIDAILYGTDDKI
                     YEFSFESKGRESKIRRPASGAINHIQRLFRESSSENNTLHQYMNKIPCNTCGGELLCI
                     EARFTTIKGYRFPELTKMTIEQLWNWLCELPNQLQKNELSLVNDILTELKIRVSYLLK
                     VGLSYISTDRTAPTLSGGELQRVRLSSQLGSELVGLTYILDEPSIGLHPRDHNLIIKM
                     IEELRDKGNTVIVVEHDKDTILSADYIIDVGPNAGTKGGFIIAEGTTQEIIKNPNSIT
                     GKYLSTYNKISSQNKIIPSKWLSLKGCHANNLKNIDVEIPLNCMCSITGVSGSGKSSL
                     VFHSLLPALEEKLKQKSIPNKNYTALTGFDAIDDFILMDQTPIGKSSRSTPATYINIF
                     DEIRSLFTETPQAKQKLLDESYFSFNSKKGQCPNCQGLGKTKIILQYMADQWVTCNEC
                     QGKRYQKEILSIQYKGKTIADILDMEVAEAKTFFSDCSDIYRKLSLLDEVGLGYLKLG
                     QNTLGLSGGESQRIKLAKELGTKTKKRMLYILDEPTTGLHFKDIENLLITFRKLVNEQ
                     HSLLIIEHNTEVIRASDWIIDIGPDSGINGGEIVASGTPDEIKINPNSITGHFI"
     misc_feature    complement(<272935..273270)
                     /locus_tag="CDBI1_01095"
                     /note="ATP-binding cassette domain I of the excision
                     repair protein UvrA; Region: ABC_UvrA_I; cd03270"
                     /db_xref="CDD:213237"
     misc_feature    complement(271891..>272229)
                     /locus_tag="CDBI1_01095"
                     /note="ATP-binding cassette domain I of the excision
                     repair protein UvrA; Region: ABC_UvrA_I; cd03270"
                     /db_xref="CDD:213237"
     misc_feature    complement(270865..271788)
                     /locus_tag="CDBI1_01095"
                     /note="ATP-binding cassette domain II of the excision
                     repair protein UvrA; Region: ABC_UvrA_II; cd03271"
                     /db_xref="CDD:213238"
     misc_feature    complement(270940..271713)
                     /locus_tag="CDBI1_01095"
                     /note="AAA domain; Region: AAA_21; pfam13304"
                     /db_xref="CDD:222036"
     gene            274564..276798
                     /locus_tag="CDBI1_01100"
                     /db_xref="GeneID:12215967"
     CDS             274564..276798
                     /locus_tag="CDBI1_01100"
                     /note="'COG5001 Predicted signal transduction protein
                     containing a membrane domain, an EAL and a GGDEF domain'"
                     /codon_start=1
                     /transl_table=11
                     /product="signaling protein"
                     /protein_id="YP_006197388.1"
                     /db_xref="GI:384359536"
                     /db_xref="GeneID:12215967"
                     /translation="MKLSRYKKNSLVLSIILCSLIISILVITVFNTVKLHNISNKQSK
                     NYLNDVSTQIVMNVDSKIKFILSDLRIMADFIKQYEGDSRYEYLSKRKTSYKYYDVGI
                     IDLEGKAEFLSGKKFDLKNTASYKKGIEGKEYSEVIESMGFVLYSVPIFNDNHEVSSI
                     LIGVSNKESMDEILNIDSFNGEGTIEIINSQGKTLFIGKNNELIKDLSYKYKDSADEP
                     WAQKMLNDFKNDKSGNITITSSKGVQCLLTYHPITRGLNDWHFLLIVPEDVVLGELNK
                     LNSFTIIMTFITTCIIGIITLILYIIRRKYVNQIENIAYLDSITNGINSTKFSMLVKP
                     LISESPDSTYMMIAMNIKDFKLINDCFGSEKGNMTLKHLYNILYKNIDENEEFVCRHD
                     ADLFYLLIKNRPVLEALELLYKIEADTNYFNKNRENPYFLRLSVGIYTIENHNEDLIT
                     IQDHANTARKSFNKTHQSDFSFYSDIERKRLISEKEISNLMEKALENKEFFMCLQPKI
                     DIKSGKISGAESLVRWKNSEKGIIYPSNFIPLFEKSGFICKLDLYILEETCKLISKWI
                     KEGKEVLRISVNVSRQHLNDKLFLEKYKHICNKYNVPTCLIDLELTESIFLENPEAID
                     IIEDIHSNGFKCSIDDFGFGYSSLGILKDFKVDIIKLDRSFFVSKNNIDRGKVVIKSI
                     IELSKRLGMKVTAEGIEELEQVEFLKNVGCDYIQGYVFSKPLLISDFENFAYENNKIK
                     NIHY"
     misc_feature    275506..275937
                     /locus_tag="CDBI1_01100"
                     /note="Diguanylate-cyclase (DGC) or GGDEF domain; Region:
                     GGDEF; cd01949"
                     /db_xref="CDD:143635"
     misc_feature    order(275611..275613,275743..275745)
                     /locus_tag="CDBI1_01100"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143635"
     misc_feature    order(275626..275628,275635..275640,275650..275652,
                     275662..275664,275731..275733,275737..275748)
                     /locus_tag="CDBI1_01100"
                     /note="active site"
                     /db_xref="CDD:143635"
     misc_feature    order(275716..275718,275803..275805)
                     /locus_tag="CDBI1_01100"
                     /note="I-site; other site"
                     /db_xref="CDD:143635"
     misc_feature    276028..276747
                     /locus_tag="CDBI1_01100"
                     /note="EAL domain. This domain is found in diverse
                     bacterial signaling proteins. It is called EAL after its
                     conserved residues and is also known as domain of unknown
                     function 2 (DUF2).  The EAL domain has been shown to
                     stimulate degradation of a second...; Region: EAL;
                     cd01948"
                     /db_xref="CDD:238923"
     gene            277054..279084
                     /locus_tag="CDBI1_01105"
                     /db_xref="GeneID:12215968"
     CDS             277054..279084
                     /locus_tag="CDBI1_01105"
                     /note="COG3711 Transcriptional antiterminator"
                     /codon_start=1
                     /transl_table=11
                     /product="putative transcription antiterminator"
                     /protein_id="YP_006197389.1"
                     /db_xref="GI:384359537"
                     /db_xref="GeneID:12215968"
                     /translation="MISGRMLLIMNFLKGKNKTSYKDISKQLSIEERKVRYDINNLNI
                     VLRSLNKSVIQKMNKGVLIIPDDFQVVCINNNEYVFSLTERVSIMKIISMFKIDNLNL
                     EKLSKEFQVSRSSIKNDLNVLSSELERNQITITYDKSFKISGEEDLIYKQRLNILKSY
                     SYLFGKEKSDLSVFEKYLVNVIEKIFKGIYLIDIYNWSMNLLLQMGWTLNDESFTWYV
                     SNIFLFTWYIHSDEKHPLESASLSEPCFENKFDQEFETIIQKKLTKEQIFLLKSFVFF
                     TNKYASLNEDMDLISTEIIVQDLIYNMSEILEISFKEDMILYKGLLNHIAPLIERIKQ
                     NIQIYEELLHVIPDKYQYVLEATKVSIQKNRVLSQIKNENEIILLAIHFLGSIHRNER
                     NNYKNILLVCGFGYGVIAMLKDSLVNDYQINIVESIPSYKLQDYKEWESIDFIITTSK
                     IVIDLPKTIIEINPFLQEEDYLKFEEKGIKRKNVLTNYMSIKKRLDFLEEDAQKRVLS
                     IICQELGYSDERILFRQLNLSDLIGIDTIRIIDEDMKWEDAVKISSNILANCDFVSAQ
                     YAENIIDILKNVGFYAVKDNEFALLHGNDSSLVKVSSISLLICKEAVSFGDKKVKIIF
                     CLASRDKKEQIPAIINLTKMVYKTNFIAMLESAKTKEEAEVLIHKYEKEVTV"
     misc_feature    277066..278460
                     /locus_tag="CDBI1_01105"
                     /note="Transcriptional antiterminator [Transcription];
                     Region: BglG; COG3711"
                     /db_xref="CDD:226234"
     misc_feature    277942..278211
                     /locus_tag="CDBI1_01105"
                     /note="PRD domain; Region: PRD; pfam00874"
                     /db_xref="CDD:201484"
     misc_feature    278239..278496
                     /locus_tag="CDBI1_01105"
                     /note="PTS_IIB_bgl_like: the PTS (phosphotransferase
                     system) IIB domain of a family of sensory systems composed
                     of a membrane-bound sugar-sensor (similar to BglF) and a
                     transcription antiterminator (similar to BglG) which
                     regulate expression of genes involved...; Region:
                     PTS_IIB_bgl_like; cd05568"
                     /db_xref="CDD:99910"
     misc_feature    order(278257..278268,278272..278280)
                     /locus_tag="CDBI1_01105"
                     /note="P-loop; other site"
                     /db_xref="CDD:99910"
     misc_feature    order(278257..278259,278263..278268,278275..278280)
                     /locus_tag="CDBI1_01105"
                     /note="active site"
                     /db_xref="CDD:99910"
     misc_feature    278257..278259
                     /locus_tag="CDBI1_01105"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:99910"
     misc_feature    278644..279039
                     /locus_tag="CDBI1_01105"
                     /note="PTS_IIA, PTS system, fructose/mannitol specific IIA
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This...; Region: PTS_IIA_fru;
                     cl00163"
                     /db_xref="CDD:241651"
     misc_feature    order(278773..278775,278827..278829)
                     /locus_tag="CDBI1_01105"
                     /note="active site"
                     /db_xref="CDD:238129"
     misc_feature    278827..278829
                     /locus_tag="CDBI1_01105"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238129"
     gene            279081..279533
                     /locus_tag="CDBI1_01110"
                     /db_xref="GeneID:12215969"
     CDS             279081..279533
                     /locus_tag="CDBI1_01110"
                     /note="COG1762 Phosphotransferase system
                     mannitol/fructose-specific IIA domain (Ntr-type)"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IIA"
                     /protein_id="YP_006197390.1"
                     /db_xref="GI:384359538"
                     /db_xref="GeneID:12215969"
                     /translation="MNKLVNVKCSFKIHANSKEEAIVSLVDVVSKEGYLIDKNQFLED
                     VLKREETLSTYIGHGIGLPHSQSVGVKNSCITIGKLDIPIEWTEEGEKVDLIFLISVT
                     KDNENNLHLKILSKLARLLMHESFRNQIRCSDEQTVYNLIKEKIEEED"
     misc_feature    279111..279506
                     /locus_tag="CDBI1_01110"
                     /note="PTS_IIA, PTS system, fructose/mannitol specific IIA
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This...; Region: PTS_IIA_fru;
                     cd00211"
                     /db_xref="CDD:238129"
     misc_feature    order(279222..279224,279270..279272)
                     /locus_tag="CDBI1_01110"
                     /note="active site"
                     /db_xref="CDD:238129"
     misc_feature    279270..279272
                     /locus_tag="CDBI1_01110"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238129"
     gene            279535..280590
                     /locus_tag="CDBI1_01115"
                     /db_xref="GeneID:12215970"
     CDS             279535..280590
                     /locus_tag="CDBI1_01115"
                     /note="'COG1299 Phosphotransferase system,
                     fructose-specific IIC component'"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PTS system fructose-like transporter
                     subunit EIIC"
                     /protein_id="YP_006197391.1"
                     /db_xref="GI:384359539"
                     /db_xref="GeneID:12215970"
                     /translation="MRILKFLQKHLMTATSYMIPFVVAGGILFALSVTLSGQAAVPET
                     GWLAKLNQIGAAGLALFIPILGGYIAFSMADKPGLAPGMIGAYLAKEVNAGFIGGIIA
                     GFIAGFVVLQLKKIKLAPTMRTLGSIFIYPLIGTLITGGIIVFLIGEPIASFMTWMTN
                     WLNGMSGVSKIPLGGILGGMIASDMGGPINKVAATFAQTQVDTLPYLMGGVGVAICIP
                     PIGLGLATLLFPKKFSKEERDSGKASLLMGCVGITEGAIPFATSDPVRVIPCIMAGSI
                     IGNIMAFLLGCLNHAPWGGLIVLPVVDNRLGYIASVLTGAVVVAVLMKLVKKDVKEDE
                     EIEEDLDESIELIFEEL"
     misc_feature    279535..280482
                     /locus_tag="CDBI1_01115"
                     /note="putative PTS system fructose-like transporter
                     subunit EIIC; Provisional; Region: PRK10478"
                     /db_xref="CDD:182490"
     gene            280657..280965
                     /locus_tag="CDBI1_01120"
                     /db_xref="GeneID:12215971"
     CDS             280657..280965
                     /locus_tag="CDBI1_01120"
                     /EC_number="2.7.1.69"
                     /note="COG1445 Phosphotransferase system fructose-specific
                     component IIB"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PTS system fructose-like transporter
                     subunit EIIB"
                     /protein_id="YP_006197392.1"
                     /db_xref="GI:384359540"
                     /db_xref="GeneID:12215971"
                     /translation="MKIVAVTSCPSGVAHTYMSAESLELSAKKFGIEIKVETQGSSGI
                     DNELSLKDIDEATCVILTNDVEIRNMERFKGKKVVRMSVSEIIKKSDALIKKIKDTFQ
                     "
     misc_feature    280663..280947
                     /locus_tag="CDBI1_01120"
                     /note="PTS_IIB_fructose: subunit IIB of enzyme II (EII) of
                     the fructose-specific phosphoenolpyruvate:carbohydrate
                     phosphotransferase system (PTS). In this system, EII (also
                     referred to as FruAB) is a fructose-specific permease made
                     up of two proteins (FruA and...; Region: PTS_IIB_fructose;
                     cd05569"
                     /db_xref="CDD:99911"
     misc_feature    order(280681..280692,280696..280704)
                     /locus_tag="CDBI1_01120"
                     /note="P-loop; other site"
                     /db_xref="CDD:99911"
     misc_feature    order(280681..280683,280687..280692,280699..280704)
                     /locus_tag="CDBI1_01120"
                     /note="active site"
                     /db_xref="CDD:99911"
     misc_feature    280681..280683
                     /locus_tag="CDBI1_01120"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:99911"
     gene            281069..282334
                     /locus_tag="CDBI1_01125"
                     /db_xref="GeneID:12215972"
     CDS             281069..282334
                     /locus_tag="CDBI1_01125"
                     /note="COG4573 Predicted tagatose 6-phosphate kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphate kinase"
                     /protein_id="YP_006197393.1"
                     /db_xref="GI:384359541"
                     /db_xref="GeneID:12215972"
                     /translation="MKKLPIKTVVQRLLDLQEEGKSATLLGIGPMSPNLLQASFELAK
                     DDDFPLMFIASRNQVDADELGGGYVNGWNQETFTKDIKKIADKVGFDGLYYLCRDHGG
                     PWQRDKERNDHLSVDEAMELGKKSYLADIEAGFDLLMIDPTKDPFEIGKVIPLDVVLE
                     RTVELIEYCENERKRLNLPDIGYEVGTEETNGGLTSTETYETFITRLKVELDNRGLPM
                     PTFIVGQTGTLTRKTEQVGTFNFRNAYDLAQMAKKYGVGLKEHNGDYLDDVTLLEHIP
                     SQIIATNVAPQYGTEETRAYLKLAEVECKLEKEGLVDKTSNIRHVLLVNAIECGRWRK
                     WVVGEQKNLTTEEIFKNEVLSNEILDIAGHYTFNNDDVKKEIEVLYDNLSKNNIDGQR
                     FVVDHIKRPLRDYAECYNLKGVTTRILNK"
     misc_feature    281165..>281659
                     /locus_tag="CDBI1_01125"
                     /note="Tagatose 6 phosphate kinase; Region:
                     Tagatose_6_P_K; cl09211"
                     /db_xref="CDD:245035"
     gene            282422..283138
                     /locus_tag="CDBI1_01130"
                     /db_xref="GeneID:12215973"
     CDS             282422..283138
                     /locus_tag="CDBI1_01130"
                     /note="COG1011 Predicted hydrolase (HAD superfamily)"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="YP_006197394.1"
                     /db_xref="GI:384359542"
                     /db_xref="GeneID:12215973"
                     /translation="MINLIFDVDDTLYNQLTPFYTAYNKVFSSIKDISIEDLYMSSRK
                     YSDEVFHMTENGEMPIKEMHIYRIMKAFEELGNSITEKDAQSFQDEYIYQQSQITLIP
                     EVERILNFSKERNINLGIITNGPSNHQRMKLKQLNIENWVDKSNIFISSEVGFSKPDT
                     NIFRVAENVMNLDRENTYYVGDSYRNDVLGAKKAGWKSIWLNHRGHEVEELFYKPDFV
                     ILEHKDLISLFIKICSYKNM"
     misc_feature    282428..283105
                     /locus_tag="CDBI1_01130"
                     /note="Predicted hydrolase (HAD superfamily) [General
                     function prediction only]; Region: COG1011"
                     /db_xref="CDD:223943"
     misc_feature    282686..283021
                     /locus_tag="CDBI1_01130"
                     /note="Haloacid dehalogenase-like hydrolases. The haloacid
                     dehalogenase-like (HAD) superfamily includes L-2-haloacid
                     dehalogenase, epoxide hydrolase, phosphoserine
                     phosphatase, phosphomannomutase, phosphoglycolate
                     phosphatase, P-type ATPase, and many others; Region:
                     HAD_like; cd01427"
                     /db_xref="CDD:119389"
     misc_feature    282785..282787
                     /locus_tag="CDBI1_01130"
                     /note="motif II; other site"
                     /db_xref="CDD:119389"
     gene            complement(283333..283626)
                     /locus_tag="CDBI1_01135"
                     /db_xref="GeneID:12215974"
     CDS             complement(283333..283626)
                     /locus_tag="CDBI1_01135"
                     /note="COG5577 Spore coat protein"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein"
                     /protein_id="YP_006197395.1"
                     /db_xref="GI:384359543"
                     /db_xref="GeneID:12215974"
                     /translation="MRNMIENLIKNNTYIDDKVIMLSMLSSAKASANMYLNSALTSST
                     PELRAIYSASLTQMVEGHTALTELSINKGWVKPYDKPIQQLTCSYKESQNVID"
     misc_feature    complement(283390..283581)
                     /locus_tag="CDBI1_01135"
                     /note="Coat F domain; Region: Coat_F; pfam07875"
                     /db_xref="CDD:203788"
     gene            complement(283632..283847)
                     /locus_tag="CDBI1_01140"
                     /db_xref="GeneID:12215975"
     CDS             complement(283632..283847)
                     /locus_tag="CDBI1_01140"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197396.1"
                     /db_xref="GI:384359544"
                     /db_xref="GeneID:12215975"
                     /translation="MRTLSETEKISLAAVIKMESDGLLMQRAINMLISDEDLKRQSES
                     SILATEGRIKAIQQFIVENEILISEEV"
     gene            complement(284392..284904)
                     /locus_tag="CDBI1_01145"
                     /db_xref="GeneID:12215976"
     CDS             complement(284392..284904)
                     /locus_tag="CDBI1_01145"
                     /note="COG0778 Nitroreductase"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="YP_006197397.1"
                     /db_xref="GI:384359545"
                     /db_xref="GeneID:12215976"
                     /translation="MLEVIKNRRSIRTYIDKNIEEDKITEILKSAMQAPSSKNAQPWE
                     FIIVDDKELLKELSKSQHRAKHIEFAPLCIVVLGNRDKFLKPGKWIQDLGACTQNLLL
                     EVTNQGLAACWAGVFPKNKVVNKVKQILDLPVKLVPYALISIGYSEEKNEFIDRFDEN
                     KIHRNVYKNR"
     misc_feature    complement(284404..284901)
                     /locus_tag="CDBI1_01145"
                     /note="NAD(P)H:flavin oxidoreductase-like family 1.  A
                     subfamily of the nitroreductase family containing
                     uncharacterized proteins that are similar to
                     nitroreductase. Nitroreductase catalyzes the reduction of
                     nitroaromatic compounds such as nitrotoluenes; Region:
                     NADPH_oxidoreductase_1; cd02150"
                     /db_xref="CDD:239063"
     misc_feature    complement(order(284557..284562,284791..284793,
                     284869..284871,284875..284877,284881..284883))
                     /locus_tag="CDBI1_01145"
                     /note="putative FMN binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239063"
     gene            285354..285830
                     /locus_tag="CDBI1_01150"
                     /db_xref="GeneID:12215977"
     CDS             285354..285830
                     /locus_tag="CDBI1_01150"
                     /note="COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR)
                     mutase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazole carboxylase
                     catalytic subunit"
                     /protein_id="YP_006197398.1"
                     /db_xref="GI:384359546"
                     /db_xref="GeneID:12215977"
                     /translation="MKVAVVMGSKSDYPKLEEGIKLLEKYGIEVVARALSAHRTPEQL
                     SIFLKEIEDDTDVIIAAAGKAAHLPGVIASQTLIPVIGLPIKSSTMDGLDSLLSIVQM
                     PKGIPVATVTIDLGLNAALLALQIMTLKYPKLKEDLKSYREEMAQKVLEDDKNLRG"
     misc_feature    285354..285800
                     /locus_tag="CDBI1_01150"
                     /note="AIR carboxylase; Region: AIRC; pfam00731"
                     /db_xref="CDD:144362"
     gene            285836..286534
                     /locus_tag="CDBI1_01155"
                     /db_xref="GeneID:12215978"
     CDS             285836..286534
                     /locus_tag="CDBI1_01155"
                     /EC_number="6.3.2.6"
                     /note="COG0152
                     Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR)
                     synthase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazole-succinocarboxamide
                     synthase"
                     /protein_id="YP_006197399.1"
                     /db_xref="GI:384359547"
                     /db_xref="GeneID:12215978"
                     /translation="MLLYEGKAKQVYSTDNENEYVVYYKDDATAFNGEKKAEISSKGI
                     LNNKISTIIFEMLKENNINTHFIKSLSDREMLVKKVEILPLEVIVRNIAAGSICKRVG
                     LEEGVVFDEPIFEISYKNDAYGDPMLNDDYAVAMKLATREELKFLREETLKINELLKA
                     FFLKLNLKLVDFKIEFGKDSEGNIILADEVSPDTCRLWDVNTNEKLDKDRFRKDLGDL
                     VEGYTEVLSRMNNK"
     misc_feature    285839..286531
                     /locus_tag="CDBI1_01155"
                     /note="phosphoribosylaminoimidazole-succinocarboxamide
                     synthase; Reviewed; Region: PRK09362"
                     /db_xref="CDD:181800"
     misc_feature    285839..286528
                     /locus_tag="CDBI1_01155"
                     /note="bacterial and archaeal
                     5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide
                     (SAICAR) synthase; Region: SAICAR_synt_PurC; cd01415"
                     /db_xref="CDD:133470"
     misc_feature    order(285842..285847,285851..285856,285860..285862,
                     285866..285871,285893..285895,285899..285901,
                     286028..286030,286067..286069,286073..286075,
                     286079..286081,286190..286192,286358..286360,
                     286394..286399)
                     /locus_tag="CDBI1_01155"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:133470"
     misc_feature    order(285845..285847,285851..285862,285866..285868,
                     285893..285895,285929..285931,286031..286033,
                     286064..286075,286079..286081,286091..286093,
                     286097..286099,286103..286105,286115..286123,
                     286184..286186,286190..286192,286208..286210,
                     286346..286354,286358..286360,286397..286399,
                     286412..286423)
                     /locus_tag="CDBI1_01155"
                     /note="active site"
                     /db_xref="CDD:133470"
     misc_feature    order(285929..285931,286091..286093,286097..286099,
                     286103..286105,286115..286123,286184..286186,
                     286208..286210,286346..286354,286412..286423)
                     /locus_tag="CDBI1_01155"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:133470"
     gene            286546..287913
                     /locus_tag="CDBI1_01160"
                     /db_xref="GeneID:12215979"
     CDS             286546..287913
                     /locus_tag="CDBI1_01160"
                     /note="COG0034 Glutamine phosphoribosylpyrophosphate
                     amidotransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="YP_006197400.1"
                     /db_xref="GI:384359548"
                     /db_xref="GeneID:12215979"
                     /translation="MCGVLGIYSNKDVTKELYYSLYSMQHRGQESCGLALLDDGEIKY
                     KKDMGLVGDVFKENELSKLKGNIGIGHVRYSTAGGSHVSNCQPLVGSCRKRQLAIAHN
                     GNLVNANYLKDMLEEDGYMFQTNSDTEVILYILARYYKGDIVESLKVTMDYIKGAYAL
                     VIMSQEELVAVRDPHGFRPLVLGKKGDEYIFASENCAIDILGGEVIRDVEPGEIIVVK
                     DGELKSYFYSENYKPVKKSCIFEHIYFARNDATIDNVNAYEFRIKCGERLAQNETVKA
                     DMVVPVPDSGWPGAIGYANASGLKISEGLVKNRYVGRTFIKPTQEEREIAVKIKLNPL
                     STIIKGKSIILVDDSIVRGTTSKQLVKSLREAGAKEIHLRITSPPVAYSCYYGIDTPN
                     RSKLIASSNNVEEMREYIGCDSLKFLDIEGMLDATEHKSTFCKACFDGEYPVKKIDKE
                     ELLSC"
     misc_feature    286549..287874
                     /locus_tag="CDBI1_01160"
                     /note="amidophosphoribosyltransferase; Region: purF;
                     TIGR01134"
                     /db_xref="CDD:233285"
     misc_feature    286549..287304
                     /locus_tag="CDBI1_01160"
                     /note="Glutamine amidotransferases class-II (GN-AT)_GPAT-
                     type. This domain is found at the N-terminus of  glutamine
                     phosphoribosylpyrophosphate (Prpp) amidotransferase
                     (GPATase) . The glutaminase domain catalyzes amide
                     nitrogen transfer from glutamine to the...; Region:
                     GPATase_N; cd00715"
                     /db_xref="CDD:238367"
     misc_feature    order(286549..286551,286624..286629,286762..286764,
                     286849..286854,286924..286926)
                     /locus_tag="CDBI1_01160"
                     /note="active site"
                     /db_xref="CDD:238367"
     misc_feature    order(286597..286602,286609..286611,286630..286632,
                     286813..286815,286930..286932,286939..286944,
                     286951..286956)
                     /locus_tag="CDBI1_01160"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238367"
     misc_feature    287335..287673
                     /locus_tag="CDBI1_01160"
                     /note="Phosphoribosyl transferase (PRT)-type I domain;
                     Region: PRTases_typeI; cd06223"
                     /db_xref="CDD:206754"
     misc_feature    order(287392..287394,287398..287400,287584..287592,
                     287596..287610)
                     /locus_tag="CDBI1_01160"
                     /note="active site"
                     /db_xref="CDD:206754"
     gene            287907..288983
                     /locus_tag="CDBI1_01165"
                     /db_xref="GeneID:12215980"
     CDS             287907..288983
                     /locus_tag="CDBI1_01165"
                     /note="COG0150 Phosphoribosylaminoimidazole (AIR)
                     synthetase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="YP_006197401.1"
                     /db_xref="GI:384359549"
                     /db_xref="GeneID:12215980"
                     /translation="MLTYKESGVDIDEGNRAVDLIKGKIKGTYDGNVVGDLGNFSGLY
                     SLKDFVGMKEPVLLASTDGVGTKLKIAQMMDKHDTVGIDLVAMCVNDLICQGAKPLFF
                     LDYIALGKLVPEHIEKIVGGIADGCKMSGCALIGGETAEMPGMYGEDDYDLAGFSVGI
                     ADKEKIVSGNNVKSGDVLVGISSSGVHSNGFSFIRKIFLETYNYKMEQYVEELGMTVG
                     EALLTPTKIYVKLALDVLAKHDIKAIAHITGGGLIENITRVIPKGLGLDINKKSWEKP
                     PIFKMIEGFNAVDERELHKSFNMGIGLVLIVDKENADDVVNFINNRENDNAAYVDKKY
                     SELLEDKAYIIGEVVDSHEGVELC"
     misc_feature    287910..288950
                     /locus_tag="CDBI1_01165"
                     /note="phosphoribosylaminoimidazole synthetase;
                     Provisional; Region: PRK05385"
                     /db_xref="CDD:235439"
     misc_feature    288009..288953
                     /locus_tag="CDBI1_01165"
                     /note="PurM (Aminoimidazole Ribonucleotide [AIR]
                     synthetase), one of eleven enzymes required for purine
                     biosynthesis, catalyzes the conversion of
                     formylglycinamide ribonucleotide (FGAM) and ATP to AIR,
                     ADP, and Pi, the fifth step in de novo purine
                     biosynthesis; Region: PurM; cd02196"
                     /db_xref="CDD:100032"
     misc_feature    order(288024..288038,288072..288083,288087..288089,
                     288093..288095,288111..288113,288177..288179,
                     288189..288191,288207..288209,288216..288218,
                     288225..288227,288318..288320,288330..288332,
                     288336..288338,288357..288362,288372..288374,
                     288678..288680)
                     /locus_tag="CDBI1_01165"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:100032"
     misc_feature    order(288177..288179,288312..288320)
                     /locus_tag="CDBI1_01165"
                     /note="putative ATP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:100032"
     gene            288977..289570
                     /locus_tag="CDBI1_01170"
                     /db_xref="GeneID:12215981"
     CDS             288977..289570
                     /locus_tag="CDBI1_01170"
                     /note="COG0299 Folate-dependent phosphoribosylglycinamide
                     formyltransferase PurN"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="YP_006197402.1"
                     /db_xref="GI:384359550"
                     /db_xref="GeneID:12215981"
                     /translation="MLNIGVLISGGGTNLQAVIDGTESGEIKGQVKVVISSKQGAYGL
                     ERAKNHNIKAICETDEDKIIEILKENKIDLVVLAGYLKIISPKLVNEFRNKMINIHPS
                     LIPSFCGAGFYGEKVHQGVIDYGAKVTGATVHFVDEGADTGPIIMQDVVKVNQDDDAK
                     TLAKRVLEVEHRILKESISLFCENKLKLQGRRVFINE"
     misc_feature    288977..289561
                     /locus_tag="CDBI1_01170"
                     /note="phosphoribosylglycinamide formyltransferase;
                     Reviewed; Region: purN; PRK05647"
                     /db_xref="CDD:235544"
     misc_feature    288983..289519
                     /locus_tag="CDBI1_01170"
                     /note="Phosphoribosylglycinamide formyltransferase (GAR
                     transformylase, GART); Region: FMT_core_GART; cd08645"
                     /db_xref="CDD:187714"
     misc_feature    order(288998..289000,289013..289021,289205..289228,
                     289241..289243,289268..289279,289316..289318,
                     289376..289378,289382..289387,289394..289399,
                     289484..289486)
                     /locus_tag="CDBI1_01170"
                     /note="active site"
                     /db_xref="CDD:187714"
     misc_feature    order(289013..289018,289208..289213,289271..289273,
                     289277..289279,289484..289486)
                     /locus_tag="CDBI1_01170"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187714"
     misc_feature    order(289205..289207,289214..289216,289220..289228,
                     289241..289243,289268..289270,289382..289387,
                     289394..289399)
                     /locus_tag="CDBI1_01170"
                     /note="cosubstrate binding site; other site"
                     /db_xref="CDD:187714"
     misc_feature    order(289268..289270,289274..289276,289397..289399)
                     /locus_tag="CDBI1_01170"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187714"
     gene            289563..291095
                     /gene="purH"
                     /locus_tag="CDBI1_01175"
                     /db_xref="GeneID:12215982"
     CDS             289563..291095
                     /gene="purH"
                     /locus_tag="CDBI1_01175"
                     /EC_number="3.5.4.10"
                     /note="COG0138 AICAR transformylase/IMP cyclohydrolase
                     PurH (only IMP cyclohydrolase domain in Aful)"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="YP_006197403.1"
                     /db_xref="GI:384359551"
                     /db_xref="GeneID:12215982"
                     /translation="MSKRALISVTDKTGVVEFAKELNKLDYEIISTGNTFKTLKENGV
                     NVMQVEDVTNFPEILDGRVKTLNPYIHGGILYKRDKESHVETVNEHKIHSIDLVAVNL
                     YDFEGTLKAGKSHDEIIENIDIGGPSMIRSAAKNYKDVIVVVDIKDYDSIIEKLKTDT
                     MTLEDRKKLSYKAFSTTGRYDALISSYFAGEVGDTYPDILNLTFQKEQTLRYGENPHQ
                     NGFLYSQSNAKNPILNYEQLGGKELSFNNLNDLHGCLEVMREFKDSEEVVSVAIKHAN
                     SCGVGLGKDAFEAYTKCYEADKVSIFGGIVGITSTIDKATAEKLNEIFLEIVVAYDFE
                     PEALEVLKQKKNLRILKLAKIEDSLQPYEMKYLDGKLLIQDRNNILAEKSENVTKAKP
                     TDAQLKDMEFGMRVVKNMKSNAIAIVKNGQTLALGCGQTSRIWALKNALENNKDKDFT
                     GAVLASDAFFPFDDCVTLAHEYGISAVVQPGGSIKDKDSIEACDKYDMVMVFTGIRHF
                     KH"
     misc_feature    289563..291092
                     /gene="purH"
                     /locus_tag="CDBI1_01175"
                     /note="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase; Provisional; Region:
                     purH; PRK00881"
                     /db_xref="CDD:234854"
     misc_feature    289569..290126
                     /gene="purH"
                     /locus_tag="CDBI1_01175"
                     /note="Inosine monophosphate cyclohydrolase domain. This
                     is the N-terminal domain in the purine biosynthesis
                     pathway protein ATIC (purH). The bifunctional ATIC protein
                     contains a C-terminal  ATIC formylase domain that
                     formylates...; Region: IMPCH; cd01421"
                     /db_xref="CDD:238709"
     misc_feature    order(289590..289592,289596..289598,289656..289658,
                     289665..289667,289752..289757,289863..289865,
                     289929..289931)
                     /gene="purH"
                     /locus_tag="CDBI1_01175"
                     /note="purine monophosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:238709"
     misc_feature    order(289725..289727,289734..289739,289746..289751,
                     289758..289766,289773..289778,289785..289787,
                     289926..289934,289941..289943,289953..289958,
                     289965..289967,290061..290063,290070..290078,
                     290100..290108,290112..290117,290124..290126)
                     /gene="purH"
                     /locus_tag="CDBI1_01175"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238709"
     misc_feature    order(289752..289754,289929..289931)
                     /gene="purH"
                     /locus_tag="CDBI1_01175"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:238709"
     misc_feature    289959..290888
                     /gene="purH"
                     /locus_tag="CDBI1_01175"
                     /note="AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas;
                     smart00798"
                     /db_xref="CDD:214822"
     misc_feature    <290901..291092
                     /gene="purH"
                     /locus_tag="CDBI1_01175"
                     /note="AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas;
                     cl03362"
                     /db_xref="CDD:243400"
     gene            291106..292356
                     /locus_tag="CDBI1_01180"
                     /db_xref="GeneID:12215983"
     CDS             291106..292356
                     /locus_tag="CDBI1_01180"
                     /note="COG0151 Phosphoribosylamine-glycine ligase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="YP_006197404.1"
                     /db_xref="GI:384359552"
                     /db_xref="GeneID:12215983"
                     /translation="MKILVVGGGGREHAICWKLSKEKNVEKVYCAPGNAGITNVAECV
                     NIGDTNIEELLKFAKENEIGLTIVGPEVPLVMGIVDEFEKEGLRVFGPNKKCAQLEGS
                     KAFSKEFMIKHNIPTAKYKEYTNLEEAISEIDSFGYPVVIKADGLAAGKGVVIPENRE
                     DAIATLKEMMSDKKFGAAGDKIVIEEFLKGIETSILAFVDNDTIVPMASAKDHKKVNN
                     YEQGPNTGGMGTFSPSEIYTEELANKVKETVLEKTLEGFKKDGLNFKGILFVGLMITE
                     DGEKVLEYNVRFGDPETQSVLFRLETDLHEIMETILDNKLKDIEINYSDDEAVCVMLT
                     SGGYPDSYEKGKIITGLENLDDDIVVFHSGTKMLDGNLVTNGGRVIGITAKSTTVKDA
                     AEKVYENIKKINFEGMHYRTDIGR"
     misc_feature    291106..292350
                     /locus_tag="CDBI1_01180"
                     /note="phosphoribosylamine--glycine ligase; Provisional;
                     Region: PRK00885"
                     /db_xref="CDD:234856"
     misc_feature    291106..291405
                     /locus_tag="CDBI1_01180"
                     /note="Phosphoribosylglycinamide synthetase, N domain;
                     Region: GARS_N; pfam02844"
                     /db_xref="CDD:217251"
     misc_feature    291406..291984
                     /locus_tag="CDBI1_01180"
                     /note="Phosphoribosylglycinamide synthetase, ATP-grasp (A)
                     domain; Region: GARS_A; pfam01071"
                     /db_xref="CDD:216282"
     misc_feature    292087..292353
                     /locus_tag="CDBI1_01180"
                     /note="Phosphoribosylglycinamide synthetase, C domain;
                     Region: GARS_C; pfam02843"
                     /db_xref="CDD:217250"
     gene            292381..296187
                     /locus_tag="CDBI1_01185"
                     /db_xref="GeneID:12215984"
     CDS             292381..296187
                     /locus_tag="CDBI1_01185"
                     /note="'COG0046 Phosphoribosylformylglycinamidine (FGAM)
                     synthase, synthetase domain'"
                     /codon_start=1
                     /transl_table=11
                     /product="formylglycinamidine ribonucleotide synthetase"
                     /protein_id="YP_006197405.1"
                     /db_xref="GI:384359553"
                     /db_xref="GeneID:12215984"
                     /translation="MLNTENKDSMVRRVLVEKREGFDLEAKALKKDLVESLHIDNIEN
                     LRILNRYDVEGISEEVYENAAKTIFSEPNLDVVYYEEIPKLNDERVFAIEFLPGQYDQ
                     RGDWAAQCVQIVNQGIRPAINTAKVYILSGKITDEEFSKIKDYCINPVDSREASLEKP
                     ETLKMETEIPTTVEVLDGFIDLDENGLRTFVSEKGLAMTLGDLQHVQKYFKDTEKRNP
                     TITEIKVLDTYWSDHCRHTTFMTEIENVKIEDGKFNDIVKEAYQMYLNSRDNVYVNRH
                     KDICLMDIATVAVKELKKNGKLNDLDESEEINACSINVDVEVDGKMEKYLVMFKNETH
                     NHPTEIEPFGGAATCLGGAIRDPLSGRSYVYQAMRVTGSADPRTTLEDTLPGKLMQRK
                     ITTEAAHGYSSYGNQIGLTTGQVAEVYDENFVAKRMEIGAVIAAVPKENVVRERPEAG
                     DVIVLLGGKTGRDGCGGATGSSKEHSEESILTCSAEVQKGDAPNERKIQRFFRNKEVA
                     QMIKRCNDFGAGGVCVAIGEIADSLDINLDLVPKKYDGLDGTELAISESQERMAVAIK
                     KENKDKFIQLAVEENLEATHVATVTDTGYLRMFWNGKAIVDINREFLDTNGVKQTTDV
                     HVTKVDEENTFFSSNEIVKDVKCASMKDKFTKVLSDLNVCSQKGLVEMFDNTIGGNTV
                     LMPFGGKYQATPTQGMVAKIPVLGGETNTSTIMTYGYNPKVGKWSPFHGALYAVVESV
                     CKLVAIGGNYSTTRLTFQEYFEKLGNNPEKWGKPFSALLGAFYAQSKFEIPAIGGKDS
                     MSGTFKDIEVPPTLVSFAVDTVDAKKVVSPEFKKADSKVVMLCVNKAENDVVDFEELK
                     RNLDKVRELIHGNKVLSTYALGFAGVGEAISKMAFGNKIGFKFSEEAEKTFTDDKLFE
                     ASYGNIVLELANDDLCMLEGYNYVVLGSTTKEASIFIKGEELALDELYKAHCSTLEPI
                     FPTKTEEVKSKIETISYISQGEAKKSSLSIATPRVFIPAFPGTNCEYDSARAFERVGA
                     NANIRVFKNLTYKDIEDSIDTIVNEIKSSQIIMLPGGFSAGDEPDGSGKFIATVFRNP
                     RVQEAINEFLTQKDGLMLGICNGFQVLIKLGLVPYGEIRVPSESAPTLTYNNIGRHQA
                     KIARTRISSNKSPWLAQTNVGDIHNIAISHGEGKFVASEDVMRELIANGQVATQYVDF
                     NNEATYDIEFNPNGSFYAVEGITSADGRVFGKMGHSERIGEEVFKNIIGEKDQKIFES
                     GVKYFR"
     misc_feature    292414..296181
                     /locus_tag="CDBI1_01185"
                     /note="phosphoribosylformylglycinamidine synthase, clade
                     II; Region: FGAM-synthase; TIGR01857"
                     /db_xref="CDD:130916"
     misc_feature    293044..>293127
                     /locus_tag="CDBI1_01185"
                     /note="AIR (aminoimidazole ribonucleotide) synthase
                     related protein. This family includes Hydrogen
                     expression/formation protein HypE, AIR synthases, FGAM
                     (formylglycinamidine ribonucleotide) synthase and
                     Selenophosphate synthetase (SelD). The N-terminal
                     domain...; Region: PurM-like; cl10019"
                     /db_xref="CDD:245231"
     misc_feature    293353..294204
                     /locus_tag="CDBI1_01185"
                     /note="PurL subunit of the formylglycinamide
                     ribonucleotide amidotransferase (FGAR-AT), first repeat.
                     FGAR-AT catalyzes the ATP-dependent conversion of
                     formylglycinamide ribonucleotide (FGAR) and glutamine to
                     formylglycinamidine ribonucleotide (FGAM), ADP; Region:
                     PurL_repeat1; cd02203"
                     /db_xref="CDD:100034"
     misc_feature    order(293356..293367,293371..293373,293446..293448,
                     293476..293478,293485..293487,293494..293496,
                     293626..293628,293659..293664,293674..293676)
                     /locus_tag="CDBI1_01185"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:100034"
     misc_feature    order(293434..293436,293446..293448,293620..293628)
                     /locus_tag="CDBI1_01185"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:100034"
     misc_feature    294466..295209
                     /locus_tag="CDBI1_01185"
                     /note="PurL subunit of the formylglycinamide
                     ribonucleotide amidotransferase (FGAR-AT), second repeat.
                     FGAR-AT catalyzes the ATP-dependent conversion of
                     formylglycinamide ribonucleotide (FGAR) and glutamine to
                     formylglycinamidine ribonucleotide (FGAM), ADP; Region:
                     PurL_repeat2; cd02204"
                     /db_xref="CDD:100035"
     misc_feature    order(294514..294525,294529..294531,294604..294606,
                     294643..294645,294652..294654,294661..294663,
                     294766..294768,294808..294813,294823..294825)
                     /locus_tag="CDBI1_01185"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:100035"
     misc_feature    order(294592..294594,294604..294606,294760..294768)
                     /locus_tag="CDBI1_01185"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:100035"
     misc_feature    295399..296172
                     /locus_tag="CDBI1_01185"
                     /note="Type 1 glutamine amidotransferase (GATase1)-like
                     domain found in Formylglycinamide ribonucleotide
                     amidotransferase; Region: GATase1_FGAR_AT; cd01740"
                     /db_xref="CDD:153211"
     misc_feature    order(295579..295584,295594..295596,295705..295707,
                     295717..295719,295903..295908,296089..296091,
                     296095..296106)
                     /locus_tag="CDBI1_01185"
                     /note="putative active site [active]"
                     /db_xref="CDD:153211"
     misc_feature    order(295705..295707,296095..296097,296101..296103)
                     /locus_tag="CDBI1_01185"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:153211"
     gene            296393..297265
                     /locus_tag="CDBI1_01190"
                     /db_xref="GeneID:12215985"
     CDS             296393..297265
                     /locus_tag="CDBI1_01190"
                     /note="COG1091 dTDP-4-dehydrorhamnose reductase"
                     /codon_start=1
                     /transl_table=11
                     /product="dtdp-4-dehydrorhamnose reductase"
                     /protein_id="YP_006197406.1"
                     /db_xref="GI:384359554"
                     /db_xref="GeneID:12215985"
                     /translation="MKILITGSNGQLGKELVSQLEAINQSINQPKYVILATTRNDLDI
                     SNQTNIDNFILHNKPDVIVNCAAYTKVDACEDNIEIAYKINALGVRNLAIASEKVNAK
                     LVHISTDYVFNGFSKYPYREDNKTEPNSVYGKSKLMGEKFVEQFSHKYFILRTAWLYG
                     NGNNFVKTMIKLSLENKEVNVVNDQFGTPTSTVDLAKIIIRIMETEHYGVYHATCEGE
                     CSWYDFAKKIFELKNIDIKVNPIKSNEFKCKAQRPLYSVLDNFMLKLIGLNSFRKWEE
                     SIEEYLERYDINEK"
     misc_feature    296396..297226
                     /locus_tag="CDBI1_01190"
                     /note="dTDP-6-deoxy-L-lyxo-4-hexulose reductase and
                     related proteins, extended (e) SDRs; Region:
                     dTDP_HR_like_SDR_e; cd05254"
                     /db_xref="CDD:187564"
     misc_feature    296399..297247
                     /locus_tag="CDBI1_01190"
                     /note="RmlD substrate binding domain; Region:
                     RmlD_sub_bind; pfam04321"
                     /db_xref="CDD:218026"
     misc_feature    order(296411..296413,296417..296428,296504..296509,
                     296516..296527,296585..296593,296597..296599,
                     296642..296644,296708..296716,296786..296788,
                     296798..296800,296855..296866)
                     /locus_tag="CDBI1_01190"
                     /note="NADP binding site [chemical binding]; other site"
                     /db_xref="CDD:187564"
     misc_feature    order(296645..296647,296714..296716,296786..296788,
                     296798..296800)
                     /locus_tag="CDBI1_01190"
                     /note="active site"
                     /db_xref="CDD:187564"
     misc_feature    order(296714..296716,296786..296788,296861..296863,
                     296897..296899,296933..296935,296951..296953)
                     /locus_tag="CDBI1_01190"
                     /note="putative substrate binding site [chemical binding];
                     other site"
                     /db_xref="CDD:187564"
     gene            297374..298255
                     /locus_tag="CDBI1_01195"
                     /db_xref="GeneID:12215986"
     CDS             297374..298255
                     /locus_tag="CDBI1_01195"
                     /note="COG1209 dTDP-glucose pyrophosphorylase"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase"
                     /protein_id="YP_006197407.1"
                     /db_xref="GI:384359555"
                     /db_xref="GeneID:12215986"
                     /translation="MKGIILAGGSGTRLYPITKCISKQTLPIYDKPMIYYPMSVLMLA
                     GIQDILIISTPRDIKAFEELFGDGSSLGLKITYAIQEKANGIAEAFIIGEEFIGNDRV
                     SLVLGDNIFYGYGFSERLENAVKRKGATIFGYHVSNPNSFGVVEFDKDFNVLSIEEKP
                     TVPKSNYAIPGLYFYDNDVVEIAKLVEPSDRGELEITSINSEYLKRGKLKVELLGRGM
                     AWLDTGTHKGLLDASNYVEVVQTRQGLYIACLEEIAYTKGYISREQLMKLAKPLIKTE
                     YGQYLLKLASEDMQYGR"
     misc_feature    297374..298090
                     /locus_tag="CDBI1_01195"
                     /note="G1P_TT_short is the short form of
                     glucose-1-phosphate thymidylyltransferase; Region:
                     G1P_TT_short; cd02538"
                     /db_xref="CDD:133019"
     misc_feature    297377..298228
                     /locus_tag="CDBI1_01195"
                     /note="glucose-1-phosphate thymidylyltransferase, short
                     form; Region: rmlA; TIGR01207"
                     /db_xref="CDD:130274"
     misc_feature    order(297389..297391,297395..297400,297611..297613,
                     297620..297631,297695..297697,297800..297802,
                     297845..297850,297878..297880,297962..297964)
                     /locus_tag="CDBI1_01195"
                     /note="substrate binding site; other site"
                     /db_xref="CDD:133019"
     misc_feature    order(297407..297409,297416..297424,297431..297436,
                     297446..297454,297458..297469,297476..297478,
                     297551..297553,297707..297712,297773..297784,
                     297794..297799,298031..298039,298049..298054,
                     298061..298063,298070..298078,298085..298090)
                     /locus_tag="CDBI1_01195"
                     /note="tetramer interface; other site"
                     /db_xref="CDD:133019"
     gene            298292..298849
                     /locus_tag="CDBI1_01200"
                     /db_xref="GeneID:12215987"
     CDS             298292..298849
                     /locus_tag="CDBI1_01200"
                     /note="'COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and
                     related enzymes'"
                     /codon_start=1
                     /transl_table=11
                     /product="dtdp-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="YP_006197408.1"
                     /db_xref="GI:384359556"
                     /db_xref="GeneID:12215987"
                     /translation="MGKINVIKTKIEGLYIVEPNVFCDERGYFMESYNKKDFIEQGLD
                     MCFIQDNESSSRKGVLRGMHFQVRYPQGKLVRVTEGEVFDVAVDLRKDSQTFGKWEGV
                     ILSDKNKKQFYIPEGFAHGFLVLSEKAVFNYKCTNYYYPEFEHGFIWNDKQISIEWPL
                     KGIEEIFLSEKDKKQKSFKDICIRR"
     misc_feature    298307..298831
                     /locus_tag="CDBI1_01200"
                     /note="dTDP-4-dehydrorhamnose 3,5-epimerase; Region:
                     dTDP_sugar_isom; pfam00908"
                     /db_xref="CDD:144487"
     gene            298887..299870
                     /locus_tag="CDBI1_01205"
                     /db_xref="GeneID:12215988"
     CDS             298887..299870
                     /locus_tag="CDBI1_01205"
                     /note="'COG1088 dTDP-D-glucose 4,6-dehydratase'"
                     /codon_start=1
                     /transl_table=11
                     /product="dtdp-glucose 4,6-dehydratase"
                     /protein_id="YP_006197409.1"
                     /db_xref="GI:384359557"
                     /db_xref="GeneID:12215988"
                     /translation="MKKILITGGAGFIGSNFVHYMLNKYVDYFIVNLDLLTYAGNLET
                     LIEIQDSSNYKFVKGDISNREQMYKLFEEERFDIVVNFAAESHVDRSVENPDLFIKTN
                     IIGTQVLLDASIKYGVKRYHQISTDEVYGDLPIDRKDLFFTEQSPINPSSPYSASKAS
                     ADLLVSSYYRTYGLLTTISRCSNNYGPYHFPEKLIPLMILNALENKQLPVYGNGENVR
                     DWLHVYDHCTAIDLIIHKGNIGEIYNIGGHNERSNLEVVKMILNLLDKSEELISYVND
                     RPGHDLRYAIDATKIENELGWKAKYDFDLGIKETVKWYIENESWWKAVLSV"
     misc_feature    298890..299864
                     /locus_tag="CDBI1_01205"
                     /note="dTDP-D-glucose 4,6-dehydratase [Cell envelope
                     biogenesis, outer membrane]; Region: RfbB; COG1088"
                     /db_xref="CDD:224013"
     misc_feature    298890..299843
                     /locus_tag="CDBI1_01205"
                     /note="dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs;
                     Region: dTDP_GD_SDR_e; cd05246"
                     /db_xref="CDD:187557"
     misc_feature    order(298908..298910,298914..298925,298986..298997,
                     299001..299006,299061..299069,299130..299138,
                     299142..299144,299187..299189,299256..299264,
                     299346..299348,299358..299360,299427..299438)
                     /locus_tag="CDBI1_01205"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:187557"
     misc_feature    order(299142..299150,299262..299270,299346..299348,
                     299427..299435,299460..299468,299475..299480,
                     299511..299519,299532..299534,299538..299540,
                     299643..299645,299715..299717,299724..299726,
                     299736..299738)
                     /locus_tag="CDBI1_01205"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187557"
     misc_feature    order(299154..299156,299160..299162,299169..299174,
                     299181..299183,299193..299198,299205..299207,
                     299217..299219,299226..299228,299280..299282,
                     299319..299321,299325..299330,299334..299345,
                     299352..299354,299361..299366,299373..299378,
                     299385..299390,299394..299402,299727..299729)
                     /locus_tag="CDBI1_01205"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187557"
     misc_feature    order(299190..299192,299262..299264,299346..299348,
                     299358..299360)
                     /locus_tag="CDBI1_01205"
                     /note="active site"
                     /db_xref="CDD:187557"
     gene            299909..300577
                     /locus_tag="CDBI1_01210"
                     /db_xref="GeneID:12215989"
     CDS             299909..300577
                     /locus_tag="CDBI1_01210"
                     /note="COG0741 Soluble lytic murein transglycosylase and
                     related regulatory proteins (some contain LysM/invasin
                     domains)"
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase"
                     /protein_id="YP_006197410.1"
                     /db_xref="GI:384359558"
                     /db_xref="GeneID:12215989"
                     /translation="MNEISSLINILALTQLSGSNTTNQCNCTYNSSSGFDMIMMTLLK
                     ALSQNNQQTSNGYNLSSNSENLFDELGSVVNNTASRFIDVDTKDKSVKSRIENAIEQA
                     SKKYNVDSNLIKAIIKVESDFNPNTVSSAGAKGLMQLMPENCRDLGVTDPFNIEQNID
                     AGTRHIKEYIDMFGGSIEMGLMAYNGGPGRMKSRGVESISDLYKMPKETQNYIPKVMK
                     YYRG"
     misc_feature    <300140..300568
                     /locus_tag="CDBI1_01210"
                     /note="Soluble lytic murein transglycosylase and related
                     regulatory proteins (some contain LysM/invasin domains)
                     [Cell envelope biogenesis, outer membrane]; Region: MltE;
                     COG0741"
                     /db_xref="CDD:223812"
     misc_feature    300239..300571
                     /locus_tag="CDBI1_01210"
                     /note="Lytic Transglycosylase (LT)  and Goose Egg White
                     Lysozyme (GEWL) domain. Members include the soluble and
                     insoluble membrane-bound LTs in bacteria, the LTs in
                     bacteriophage lambda, as well as, the eukaryotic
                     'goose-type' lysozymes (GEWL).  LTs...; Region: LT_GEWL;
                     cd00254"
                     /db_xref="CDD:238157"
     misc_feature    order(300266..300268,300326..300328,300401..300403,
                     300458..300460)
                     /locus_tag="CDBI1_01210"
                     /note="N-acetyl-D-glucosamine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:238157"
     misc_feature    300266..300268
                     /locus_tag="CDBI1_01210"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:238157"
     gene            300586..301014
                     /locus_tag="CDBI1_01215"
                     /db_xref="GeneID:12215990"
     CDS             300586..301014
                     /locus_tag="CDBI1_01215"
                     /note="COG1728 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197411.1"
                     /db_xref="GI:384359559"
                     /db_xref="GeneID:12215990"
                     /translation="MGINIDKLNISPSINMEVKKLKESNKFSDKLNSLKQSSSLEDIK
                     RNLESVKKAGERLVLTQNYGDISIYKNAVKEYLKSVVDNMYSLDKNSSFWEHQYYKNV
                     KIVDSKLEDMTSKLISEEKENIDIVSTVDMIQGLLIDMYR"
     misc_feature    300586..301011
                     /locus_tag="CDBI1_01215"
                     /note="Protein of unknown function (DUF327); Region:
                     DUF327; pfam03885"
                     /db_xref="CDD:217779"
     gene            301038..301352
                     /locus_tag="CDBI1_01220"
                     /db_xref="GeneID:12215991"
     CDS             301038..301352
                     /locus_tag="CDBI1_01220"
                     /note="COG1886 Flagellar motor switch/type III secretory
                     pathway protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein"
                     /protein_id="YP_006197412.1"
                     /db_xref="GI:384359560"
                     /db_xref="GeneID:12215991"
                     /translation="MNSKKEDIYELNFGQLIEEKSGVIEENQNVFNAKVNVAVSIGNT
                     TETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESIITNEKLSVRLSKIEDSD
                     VN"
     misc_feature    301119..301343
                     /locus_tag="CDBI1_01220"
                     /note="Surface presentation of antigens (SPOA); Region:
                     SpoA; pfam01052"
                     /db_xref="CDD:201573"
     gene            301504..301779
                     /locus_tag="CDBI1_01225"
                     /db_xref="GeneID:12215992"
     CDS             301504..301779
                     /locus_tag="CDBI1_01225"
                     /note="COG2747 Negative regulator of flagellin synthesis
                     (anti-sigma28 factor)"
                     /codon_start=1
                     /transl_table=11
                     /product="negative regulator of flagellin synthesis"
                     /protein_id="YP_006197413.1"
                     /db_xref="GI:384359561"
                     /db_xref="GeneID:12215992"
                     /translation="MDIKNVSSNIVVNNYLKNTSGVKKVEEVKKINKTDKIELSKFAK
                     EMASVSNMSDENIRNKKVDEIKNALENGTYKIKPKEIAKKMIEDMRG"
     misc_feature    301606..301770
                     /locus_tag="CDBI1_01225"
                     /note="Anti-sigma-28 factor, FlgM; Region: FlgM;
                     pfam04316"
                     /db_xref="CDD:218023"
     gene            301784..302200
                     /locus_tag="CDBI1_01230"
                     /db_xref="GeneID:12215993"
     CDS             301784..302200
                     /locus_tag="CDBI1_01230"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein"
                     /protein_id="YP_006197414.1"
                     /db_xref="GI:384359562"
                     /db_xref="GeneID:12215993"
                     /translation="MITDLKVIIYEEKNIISKMMELLKEQFDYIVEKDLENLNMLNPK
                     LEDISRELASIEIKRRQLFGDDISMSEVVENSNDRYLKEIYTDLKHILALAKNQQESN
                     DSLIKKELIFTKKMINFIKPADKQTATYNSYGNIRK"
     misc_feature    301793..302194
                     /locus_tag="CDBI1_01230"
                     /note="FlgN protein; Region: FlgN; pfam05130"
                     /db_xref="CDD:218452"
     gene            302218..303528
                     /locus_tag="CDBI1_01235"
                     /db_xref="GeneID:12215994"
     CDS             302218..303528
                     /locus_tag="CDBI1_01235"
                     /note="COG1256 Flagellar hook-associated protein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative flagellar hook-associated protein"
                     /protein_id="YP_006197415.1"
                     /db_xref="GI:384359563"
                     /db_xref="GeneID:12215994"
                     /translation="MAGLFSILNTANSGMNAHQKAIQTISHNISNLDTDGYSRQRTEF
                     ATNSPMYMPSLSNSIARGQLGTGVHVTDVTRARNSFYDYQFRAEAHKYGNTVSKYDYY
                     NTIETIINEPSDYGISAGIDDFFKGWESLAKDINSDSKKSLVVENASNLATLISESYK
                     KLNKLKGDIDDNINSEIKQINDMLKSLEDLNKSIDVISGSGSTPNDLLDERDRILDDL
                     SFKLDLENSDVKNMLSDGKLELNELKNADGTWKTGVSGTLQGLFEMHGKIDTYKSDLK
                     DVSDGLAKQINDVYNTSAGITVTDFFITSNVDGEDIIKVNPAIKSNPNELKLTADEAS
                     KIAKLKDEKIDIGVAGGKVSTISDHYKAFAESVGLDSQKVNQDEVNQRKIINNIDNSR
                     MSVSGVSLDEEMTELIKIQRSYQASAKVMSTAVQLLDVVINGII"
     misc_feature    302218..303519
                     /locus_tag="CDBI1_01235"
                     /note="flagellar hook-associated protein FlgK; Validated;
                     Region: flgK; PRK07739"
                     /db_xref="CDD:236084"
     misc_feature    302239..302328
                     /locus_tag="CDBI1_01235"
                     /note="Flagella basal body rod protein; Region:
                     Flg_bb_rod; pfam00460"
                     /db_xref="CDD:109515"
     misc_feature    <303379..303516
                     /locus_tag="CDBI1_01235"
                     /note="Flagellar basal body rod FlgEFG protein C-terminal;
                     Region: Flg_bbr_C; pfam06429"
                     /db_xref="CDD:219024"
     gene            303547..304479
                     /locus_tag="CDBI1_01240"
                     /db_xref="GeneID:12215995"
     CDS             303547..304479
                     /locus_tag="CDBI1_01240"
                     /note="COG1344 Flagellin and related hook-associated
                     proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein"
                     /protein_id="YP_006197416.1"
                     /db_xref="GI:384359564"
                     /db_xref="GeneID:12215995"
                     /translation="MRVSTGMMSSNYLNSLQDNLQRLDKVNRQVNTTKEINKLSDNPY
                     KAIKILNSKSEIKTMETYVENCKDTGNWLETTDTALDQLGKLLSDIKKTLVASGDGAY
                     SDDELKTLSNETNEKMKEIANALNATHEGKYIFSGSNTGVPPVECIDNADGSVSLKFN
                     SSLNLNKLNDSLSMDIAQGISVDYNVKLSSLGFDPTKTDPFEELNNISKKLANPDADA
                     IKELTTTCLGDMEQLIENTVNVRSIYGTKANTVEAMKEKNDDSLIQLKDILSQNEEID
                     YGEKLVQLKAAELTYQASLQTGGKLFNVSILDYI"
     misc_feature    303547..304473
                     /locus_tag="CDBI1_01240"
                     /note="flagellar hook-associated protein FlgL; Validated;
                     Region: flgL; PRK07701"
                     /db_xref="CDD:181087"
     misc_feature    303553..303966
                     /locus_tag="CDBI1_01240"
                     /note="Bacterial flagellin N-terminal helical region;
                     Region: Flagellin_N; pfam00669"
                     /db_xref="CDD:216053"
     gene            304498..304887
                     /locus_tag="CDBI1_01245"
                     /db_xref="GeneID:12215996"
     CDS             304498..304887
                     /locus_tag="CDBI1_01245"
                     /note="COG1699 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly factor fliW"
                     /protein_id="YP_006197417.1"
                     /db_xref="GI:384359565"
                     /db_xref="GeneID:12215996"
                     /translation="MKVTLKKGILGFENLKEYELLDIEDNDSLKEFNSTEEEGIGFVV
                     VSPFEIINEYEIVLNQETIEKLEVKSPKDVVLFNIITLGQTFEESTVNMKAPIVINIK
                     TNFGMQIILQDDKYSIRHPLLRGDNGC"
     misc_feature    304507..304866
                     /locus_tag="CDBI1_01245"
                     /note="FliW protein; Region: FliW; pfam02623"
                     /db_xref="CDD:202316"
     gene            304881..305093
                     /locus_tag="CDBI1_01250"
                     /db_xref="GeneID:12215997"
     CDS             304881..305093
                     /locus_tag="CDBI1_01250"
                     /note="COG1551 Carbon storage regulator (could also
                     regulate swarming and quorum sensing)"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator"
                     /protein_id="YP_006197418.1"
                     /db_xref="GI:384359566"
                     /db_xref="GeneID:12215997"
                     /translation="MLVISRKKDEAVLIGESIEVKIVGVDGNNVKLAISAPNNISILR
                     KEIYEKVKSENIKATNKNIKILKSLK"
     misc_feature    304881..305042
                     /locus_tag="CDBI1_01250"
                     /note="Global regulator protein family; Region: CsrA;
                     pfam02599"
                     /db_xref="CDD:202301"
     gene            305115..305510
                     /locus_tag="CDBI1_01255"
                     /db_xref="GeneID:12215998"
     CDS             305115..305510
                     /locus_tag="CDBI1_01255"
                     /note="COG1516 Flagellin-specific chaperone FliS"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FliS"
                     /protein_id="YP_006197419.1"
                     /db_xref="GI:384359567"
                     /db_xref="GeneID:12215998"
                     /translation="MYGENPYNSYKQNAVFMASKEQLLLMLVDGAVKYTKIARAAILD
                     KNTQKAHRELVRVQDIFTELMVTLDQNAGQWAKDMYKVYDFVRYELSRANIRKDIQVI
                     DNVLPVIEQIKDTWHEADKKSKEERSRYK"
     misc_feature    305115..305480
                     /locus_tag="CDBI1_01255"
                     /note="Flagellin-specific chaperone FliS [Cell motility
                     and secretion / Intracellular trafficking and secretion /
                     Posttranslational modification, protein turnover,
                     chaperones]; Region: FliS; COG1516"
                     /db_xref="CDD:224433"
     gene            305510..305866
                     /locus_tag="CDBI1_01260"
                     /db_xref="GeneID:12216078"
     CDS             305510..305866
                     /locus_tag="CDBI1_01260"
                     /note="COG1516 Flagellin-specific chaperone FliS"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="YP_006197420.1"
                     /db_xref="GI:384359568"
                     /db_xref="GeneID:12216078"
                     /translation="MELNLAELDKLSKEELLLMLVDGTVKYTNISKEALLNNDYLKAH
                     NELIRVQNIFTELMTTLDQDAGQWAKDMYKVYEFIKSELAIADENKDIKIIDDILPIV
                     KQIRDTWHEVYNQLKI"
     misc_feature    <305573..305851
                     /locus_tag="CDBI1_01260"
                     /note="Flagellar protein FliS; Region: FliS; cl00654"
                     /db_xref="CDD:242007"
     gene            305887..307410
                     /locus_tag="CDBI1_01265"
                     /db_xref="GeneID:12216079"
     CDS             305887..307410
                     /locus_tag="CDBI1_01265"
                     /note="COG1345 Flagellar capping protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar cap protein"
                     /protein_id="YP_006197421.1"
                     /db_xref="GI:384359569"
                     /db_xref="GeneID:12216079"
                     /translation="MSSISPIRVTGLSGNFDMEGIIEASMIRDKEKVDKAKQEQQIVK
                     WKQEIYRNVIQESKDLYDKYLSVNSPNSIVSEKAYSSTRITSSDESIIVAKGSAGAEK
                     INYQFAVSQMAEPAKFTIKLNSSEPIVRQFPPNASGASSLTIGDVNIPISEQDTTSTI
                     VSKINSLCADNDIKASYSEMTGELIISRKQTGSSSDINLKVIGNDNLAQQIANDNGIT
                     FANDASGNKVASVYGKNLEADVTDEHGRVTHISKEQNSFNIDNIDYNVNSKGTAKLTS
                     VTDTEEAVKNMQAFVDDYNKLMDKVYGLVTTKKPKDYPPLTDAQKEDMTTEEIEKWEK
                     KAKEGILRNDDELRGFVEDIQSAFFGDGKNIIALRKLGINESENYNKKGQISFNADTF
                     SKALIDDSDKVYKTLAGYSSNYDDKGMFEKLKDIVYEYSGSSTSKLPKKAGIEKTASA
                     SENVYSKQIAEQERNISRLVEKMNDKEKRLYAKYSALESLLNQYSSQMNYFSQAQGN"
     misc_feature    305905..307404
                     /locus_tag="CDBI1_01265"
                     /note="flagellar capping protein; Validated; Region: fliD;
                     PRK07737"
                     /db_xref="CDD:236082"
     misc_feature    305923..306237
                     /locus_tag="CDBI1_01265"
                     /note="Flagellar hook-associated protein 2 C-terminus;
                     Region: FliD_N; pfam02465"
                     /db_xref="CDD:217052"
     misc_feature    306583..307374
                     /locus_tag="CDBI1_01265"
                     /note="Flagellar hook-associated protein 2 C-terminus;
                     Region: FliD_C; pfam07195"
                     /db_xref="CDD:219327"
     gene            307413..307748
                     /locus_tag="CDBI1_01270"
                     /db_xref="GeneID:12216080"
     CDS             307413..307748
                     /locus_tag="CDBI1_01270"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197422.1"
                     /db_xref="GI:384359570"
                     /db_xref="GeneID:12216080"
                     /translation="MDKLKEKLNLYKDISLQIINLIEKEEYIKISSKLGERQEIINSV
                     SEIDRNDFIQLYNRMELIEIDSRIRDILQGQLLEVKKELHEYKLTKQVNTMYYNLNRE
                     KVNIFNKKV"
     misc_feature    307464..307700
                     /locus_tag="CDBI1_01270"
                     /note="Flagellar protein FliT; Region: FliT; pfam05400"
                     /db_xref="CDD:203244"
     gene            307850..308722
                     /locus_tag="CDBI1_01275"
                     /db_xref="GeneID:12216081"
     CDS             307850..308722
                     /locus_tag="CDBI1_01275"
                     /note="COG1344 Flagellin and related hook-associated
                     proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin subunit"
                     /protein_id="YP_006197423.1"
                     /db_xref="GI:384359571"
                     /db_xref="GeneID:12216081"
                     /translation="MRVNTNVSALIANNQMGRNVNAQSKSMEKLSSGVRIKRAADDAA
                     GLAISEKMRAQIKGLDQAGRNVQDGISVVQTAEGALEETGNILQRMRTLSVQSSNETN
                     TAEERQKIADELLQLKDEVERISSSIEFNGKKLLDGSSTEIRLQVGANFGTNVAGTTN
                     NNNEIKVALVNTSSIMSKAGITSSTIASLNADGTSGTDAAKQMVSSLDVALKELNTSR
                     AKLGAQQNRLESTQNNLNNTIENVTAAESRIRDTDVASEMVNLSKMNILVQASQSMLA
                     QANQQPQGVLQLLG"
     misc_feature    307850..308716
                     /locus_tag="CDBI1_01275"
                     /note="flagellin; Provisional; Region: PRK12804"
                     /db_xref="CDD:183759"
     misc_feature    307856..308272
                     /locus_tag="CDBI1_01275"
                     /note="Bacterial flagellin N-terminal helical region;
                     Region: Flagellin_N; pfam00669"
                     /db_xref="CDD:216053"
     misc_feature    308459..308716
                     /locus_tag="CDBI1_01275"
                     /note="Bacterial flagellin C-terminal helical region;
                     Region: Flagellin_C; pfam00700"
                     /db_xref="CDD:144340"
     gene            308737..310956
                     /locus_tag="CDBI1_01280"
                     /db_xref="GeneID:12216082"
     CDS             308737..310956
                     /locus_tag="CDBI1_01280"
                     /note="COG0463 Glycosyltransferases involved in cell wall
                     biogenesis"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="YP_006197424.1"
                     /db_xref="GI:384359572"
                     /db_xref="GeneID:12216082"
                     /translation="MDIEERVRLCFTPFFFYKYTFERKIYMLLSIVMIVKNEEKILEK
                     TLKSLTTLRSSIESELIIVDTGSTDDTINISRKYTENVYFHNWNNDFSSMRNISISYA
                     KGEWLLILDADEILIDSSTIVKFFKDGLDKKFNSASIQLKNLYSYDKKLYGYCSVLRL
                     FKNIDFRYHGKVHEQPIYKNPIFNNVADFEHYGYLFEDEEIRLNKVKRNEKLLFEELK
                     ENDNSPYTNYQLGKNFIILGKYHEALYYLEKSYELYSKLESAPGYLITSLVKTYLYLG
                     KHKKCEKLCLKYIKKDMNNIDIYYYIAQAQVDLGKYENSIDSYKRYIYLLDNYEISTQ
                     ANSLFSDTDTVGLRDEAIITLIKIYYKLEKYESVISEYNNIEDMEKKKNVYFSLFMSL
                     YKLNRFEDIKNYYKEVSNSKIEKNSFYKNIEEVINNIKDDEKEHVYKILCDIEGNYGI
                     LNQIRINKCVSIDKCKEILNEEKEIIYAYIIKVAFEDKIDLLDIFYEMEYVWIEKYLK
                     YLLALERSFNLVLYKYIISRPNTSDIKKIRVYKAISKVVLESISLSDEKYKEIFYLYI
                     MYSYKYIRYIYRNLSDFELIKFVCNDLDKFTIEFKHLLDIKNKVNDANEKLEYIHSMR
                     KLLNEYPFYNKIIKILISELEENIKESEEFKDLKDSFIISIENMIETGKINDAKSLVD
                     DYSKTFMDDVKILNIKGILYMFENKLDKADFMLKKALSLDVENEDTIYNIEYLKSLR"
     misc_feature    308815..309720
                     /locus_tag="CDBI1_01280"
                     /note="Glycosyltransferases involved in cell wall
                     biogenesis [Cell envelope biogenesis, outer membrane];
                     Region: WcaA; COG0463"
                     /db_xref="CDD:223539"
     misc_feature    308821..309480
                     /locus_tag="CDBI1_01280"
                     /note="Glycosyltransferase family A (GT-A) includes
                     diverse families of glycosyl transferases with a common
                     GT-A type structural fold; Region: Glyco_tranf_GTA_type;
                     cl11394"
                     /db_xref="CDD:264347"
     misc_feature    order(308836..308838,308842..308844,308923..308925,
                     309067..309069,309073..309075)
                     /locus_tag="CDBI1_01280"
                     /note="active site"
                     /db_xref="CDD:132997"
     misc_feature    309418..309720
                     /locus_tag="CDBI1_01280"
                     /note="Tetratricopeptide repeat domain; typically contains
                     34 amino acids
                     [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
                     X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
                     a variety of organisms including bacteria, cyanobacteria,
                     yeast, fungi; Region: TPR; cd00189"
                     /db_xref="CDD:238112"
     misc_feature    order(309418..309423,309430..309435,309532..309537,
                     309541..309546,309553..309558,309634..309639,
                     309646..309651,309658..309663)
                     /locus_tag="CDBI1_01280"
                     /note="binding surface"
                     /db_xref="CDD:238112"
     misc_feature    order(309427..309429,309463..309465,309475..309477,
                     309484..309486,309541..309543,309577..309579,
                     309589..309591,309598..309600,309643..309645,
                     309679..309681,309691..309693,309700..309702)
                     /locus_tag="CDBI1_01280"
                     /note="TPR motif; other site"
                     /db_xref="CDD:238112"
     gene            310980..312857
                     /locus_tag="CDBI1_01285"
                     /db_xref="GeneID:12216083"
     CDS             310980..312857
                     /locus_tag="CDBI1_01285"
                     /note="COG1216 Predicted glycosyltransferases"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase group 2 family protein"
                     /protein_id="YP_006197425.1"
                     /db_xref="GI:384359573"
                     /db_xref="GeneID:12216083"
                     /translation="MNTPIVVNEKSKDIIKDWQYTYTNEDIKFTSIIILTYNQIEYTK
                     LCIESIRKFTPKNKYEIIIIDNNSSDGTVEWLKGQSDIKSVYNNKNLGFPKGCNQGIE
                     LATGENILLLNNDVIVTPNWLYNLNKALWSQDNIGAVGPITNACSYYQQIDVDYKSIE
                     DMFMFAHKINTSNINLWKYRLKLVGFCMLIKKSVLDNVGVLDELFTPGNFEDDDLSFR
                     MLESGYKLLLCQDTFIHHFGSVSFKENRNKYTDIMYINRRKFETKWGFNPEYSGMIRT
                     DLISKIDDSLEANINVLEIGCGIGATLLEIKNIYKNASIYGIEISESAGKLAKYSADV
                     LIADIEKVKLDYEKDFFDYIILGDVLEHLTDPWKIVNELKQYLKKDGCLISSIPNIMH
                     VSVLRNLVLGNFTYEDSGILDKTHLRFFTLNEITKMFNDSNYIINSVTATSMPLSEID
                     NRFIDTMCKESCKEMRQQYESYQYIVKATKSIDTKRYSSISMVNLKYALMRIDNELDV
                     DSNLSYIFDNYNITEPCFVDDIEYLVDTFVINKATLLNRLGVEAFNRGLGDFSINMFM
                     TVLEMDRDDIDSIYNITSVLCELEEFDTAYNLIKNSSKKVQSESDIQDILYFIEGKRY
                     E"
     misc_feature    311070..311825
                     /locus_tag="CDBI1_01285"
                     /note="Glycosyltransferases involved in cell wall
                     biogenesis [Cell envelope biogenesis, outer membrane];
                     Region: WcaA; COG0463"
                     /db_xref="CDD:223539"
     misc_feature    311073..311693
                     /locus_tag="CDBI1_01285"
                     /note="Subfamily of Glycosyltransferase Family GT2 of
                     unknown function; Region: GT_2_like_c; cd04186"
                     /db_xref="CDD:133029"
     misc_feature    order(311175..311177,311319..311324)
                     /locus_tag="CDBI1_01285"
                     /note="Probable Catalytic site; other site"
                     /db_xref="CDD:133029"
     misc_feature    order(311322..311324,311613..311615,311619..311621)
                     /locus_tag="CDBI1_01285"
                     /note="metal-binding site"
                     /db_xref="CDD:133029"
     misc_feature    311808..312287
                     /locus_tag="CDBI1_01285"
                     /note="Methyltransferase domain; Region: Methyltransf_23;
                     pfam13489"
                     /db_xref="CDD:222171"
     misc_feature    311850..312140
                     /locus_tag="CDBI1_01285"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    order(311862..311882,311934..311939,311988..311996,
                     312048..312050)
                     /locus_tag="CDBI1_01285"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            312850..314964
                     /locus_tag="CDBI1_01290"
                     /db_xref="GeneID:12216084"
     CDS             312850..314964
                     /locus_tag="CDBI1_01290"
                     /note="COG0745 Response regulators consisting of a
                     CheY-like receiver domain and a winged-helix DNA-binding
                     domain"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase group 2 family protein"
                     /protein_id="YP_006197426.1"
                     /db_xref="GI:384359574"
                     /db_xref="GeneID:12216084"
                     /translation="MNNDKICFITCVNDERLYEECLVYINSLDIPKNFSIETVALRGA
                     DSIASAYNKAMRETDSKYKVYLHQDAFIINKNFIYDILEIFKKNTDVGMIGVAGVKDI
                     PVNGIWWDSDKKAGKVYDSHTGKMDIYEFSNFEECFNEVMAIDGLIMITQYDVFWRED
                     KFDGWHFYDLSQSMEFRQNKYKVIVPKQNKPWCMHDSGVANINNGYDEYRIKFVKEYI
                     NLDLYRENFYEFDKKKASTILKSNKHVMDCMKEELTEQLRLKNYKDVLDIVSKIAHFS
                     VFNHTGLYSCEKCERALLECANNLPEIENTKLFTKKDLKRRKVLHVLSEGYSTGGHTR
                     LVKNWIEIDKDSVHSVVTTWQSDTLPDWLLKAIDDSGGEVISLDLISDDYLKRAVALR
                     KIAYDWADIVILYVHMWDTIPVVAFGVDGKIPILHVNHYDSTFWLGTSIADIVIDFSE
                     ASQLITLDKRGIDKSEILPMPLKEKEVFSKSEVRKRYNLEDDVTIILTIASERKYNSV
                     NDINYFKIAKTLIENTDNTIIIVVGVDTENLYWKTLSNVTDNRVICFGTTANIDDFYK
                     ISDIYLESFMVGSHTSKLDAILYDLIPVKFKNEVSPIFTNMWNFIDKFDYKNIKEVID
                     MIRRYNTSEFDRDKIKEKQSEIKHFVIDKHCIEIKNYIDKIYKEANHHKVKYDLYKND
                     EIEDYQLFVALYGYMVKNKNMS"
     misc_feature    312865..313500
                     /locus_tag="CDBI1_01290"
                     /note="Glycosyltransferase like family; Region:
                     Glyco_tranf_2_5; pfam13712"
                     /db_xref="CDD:222336"
     gene            314973..315968
                     /locus_tag="CDBI1_01295"
                     /db_xref="GeneID:12216085"
     CDS             314973..315968
                     /locus_tag="CDBI1_01295"
                     /note="COG2348 Uncharacterized protein involved in
                     methicillin resistance"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197427.1"
                     /db_xref="GI:384359575"
                     /db_xref="GeneID:12216085"
                     /translation="MNNIHINKFEKSCEKNWDYFVENKSINGTFLQTRNFLNYHEEGK
                     FTDHSLIIYKGEEILAVVPACETYENGERVFFSHLGSTFGGIIIRSGFNDIRHVNAIT
                     NKLETYLQEQSFNKVYLKNTSRIFCKEDTSLLEYFLFKNNYMFYDELSMFLELSKYKK
                     DILANFRYSKRRYFKYSLKNNLTFKRLYSDEDIVCFFNLLSNCLDSKGAKVIHSVEEL
                     LEFKNNRLKDIVEFYAVYIDDIMICGSMVFNFQERVYHTQYLASNSTYNKYYPMIFLY
                     YNLIKDALERNFKYLSFGISTLNRGKYLDEGLATFKEGFGSSAICNRTYYKNINK"
     misc_feature    315462..315857
                     /locus_tag="CDBI1_01295"
                     /note="Acetyltransferase (GNAT) domain; Region:
                     Acetyltransf_6; pfam13480"
                     /db_xref="CDD:222164"
     gene            316060..317292
                     /locus_tag="CDBI1_01300"
                     /db_xref="GeneID:12216086"
     CDS             316060..317292
                     /locus_tag="CDBI1_01300"
                     /note="COG0439 Biotin carboxylase"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate-synthetase"
                     /protein_id="YP_006197428.1"
                     /db_xref="GI:384359576"
                     /db_xref="GeneID:12216086"
                     /translation="MKRLMILGSIKYFENIVMSAKKEGIYTIVCDNRIDTPAKKICDE
                     AIDVDVFDFDKIKSIAIDKKIDGILTGFTDSLMKPYVYIANELNLPCVISCNQLESVT
                     NKAIMKKYFKNNAIPTTDYCIIESLKDLEKIQGLNFPLVIKPVDGYGSRGVYFVSNIE
                     ELIEKFEYSKEASQDGQVIIEEFYESEEIQGLAWVHNGESHVFYIGDRELVNIHTGRA
                     GKPDRLLYPSKYCFQYEEEIKSIYQNITQAFDIKNGPLYVQMLVGAYGIKVSEVMPRL
                     PGGCDYMAISQITDLDIGSLFANFSVNNEVNFDEIKKYNMHLSKCVYALPIYIRPGTI
                     KKINNIDKIENLDYVTQFLLLVKEGDTIGLYEDERQDCGRVYGIANNIFDANIKKKCI
                     HEMIEIFDENNENMIENF"
     misc_feature    316360..316899
                     /locus_tag="CDBI1_01300"
                     /note="ATP-grasp domain; Region: ATP-grasp_4; pfam13535"
                     /db_xref="CDD:222206"
     gene            317312..318256
                     /locus_tag="CDBI1_01305"
                     /db_xref="GeneID:12216087"
     CDS             317312..318256
                     /locus_tag="CDBI1_01305"
                     /note="'COG2423 Predicted ornithine cyclodeaminase,
                     mu-crystallin homolog'"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine cyclodeaminase"
                     /protein_id="YP_006197429.1"
                     /db_xref="GI:384359577"
                     /db_xref="GeneID:12216087"
                     /translation="MKLITHEQIMSLNISQKQGYEWIKESFLTKKDCQLPPKISMVEE
                     GHVFYNVMPSLNHNHMIGGIKMVTRLPGRNPSLNSDIFLYNMKDAKLKAILDGNYITA
                     FRTAAVAGLAIDTFAKKDFNTISIMGLGVTASAIMNMLSYTLKDKNINIKLLKYKDQA
                     ESFIKKYEKNEQFSFEICDTHEELIVDSDVVISTVTYTDEYLSEFKWFKKGALLLPVH
                     VMGFGNVDYLFDKVYLDDYNHLKHLENIDRYKYSCEFYNVLSKQAKGRENDDERIISY
                     NIGLSIHDILFANKIYELCETLNCEEIELKEPKEKYWI"
     misc_feature    317312..318193
                     /locus_tag="CDBI1_01305"
                     /note="Predicted ornithine cyclodeaminase, mu-crystallin
                     homolog [Amino acid transport and metabolism]; Region:
                     COG2423"
                     /db_xref="CDD:225280"
     misc_feature    <317585..318190
                     /locus_tag="CDBI1_01305"
                     /note="ornithine cyclodeaminase; Validated; Region:
                     PRK06823; cl17400"
                     /db_xref="CDD:247954"
     gene            318350..318757
                     /locus_tag="CDBI1_01310"
                     /db_xref="GeneID:12216088"
     CDS             318350..318757
                     /locus_tag="CDBI1_01310"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197430.1"
                     /db_xref="GI:384359578"
                     /db_xref="GeneID:12216088"
                     /translation="MDKYNLIKFLSIGNEYIGNLVALESNKAIPFDIKRVYYIYDVPN
                     NVKRGFHAHKNLEQVLVCLNGSVKIKCYDGVKESIFNLHKNDVGLYIGTGVWHEMFDF
                     DEKTVLISIASEHYNEEDYIRDYKEFLKYLNNM"
     misc_feature    318353..318748
                     /locus_tag="CDBI1_01310"
                     /note="WxcM-like, C-terminal; Region: FdtA; pfam05523"
                     /db_xref="CDD:203266"
     gene            318844..319935
                     /locus_tag="CDBI1_01315"
                     /db_xref="GeneID:12216089"
     CDS             318844..319935
                     /locus_tag="CDBI1_01315"
                     /note="COG0399 Predicted pyridoxal phosphate-dependent
                     enzyme apparently involved in regulation of cell wall
                     biogenesis"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197431.1"
                     /db_xref="GI:384359579"
                     /db_xref="GeneID:12216089"
                     /translation="MLVKFNNLLKQFQTHKEEYEQKIKDVMESGYYILGNEVRHFEEE
                     FASYVGSKYCVGLASGLDALIIAFRALGISEGDEVIVQSNTYIASVMGISINGATPVF
                     VEPNEYYNIDSSKIEEKINSKTKAILVVHLYGQASKMKDIQELCDKYNLYLIEDCAQS
                     HGAKYDGKMTGTFGDIGCFSFYPSKNLGAFGDAGAIVTSNEEIADKVKILRNYGSEKR
                     YYNKFVGYNSRLDEIQAGLLRVKLKYLNEIEIEKSKIVDRYLNEINNPKVILPKIENN
                     CTHVWHLFVLQVEKRDTFMEYLKKNGIESIIHYPIPPHLSEAYAYLGYKKGSFNIAEN
                     YSDKVVSIPLFVGMEDEEVSYIIKIINEY"
     misc_feature    318892..319926
                     /locus_tag="CDBI1_01315"
                     /note="DegT/DnrJ/EryC1/StrS aminotransferase family;
                     Region: DegT_DnrJ_EryC1; pfam01041"
                     /db_xref="CDD:216261"
     misc_feature    318898..319926
                     /locus_tag="CDBI1_01315"
                     /note="3-amino-5-hydroxybenzoic acid synthase family
                     (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate
                     (PLP)-dependent aspartate aminotransferase superfamily
                     (fold I). The members of this CD are involved in various
                     biosynthetic pathways for secondary...; Region: AHBA_syn;
                     cd00616"
                     /db_xref="CDD:99740"
     misc_feature    order(319021..319026,319309..319311,319318..319320,
                     319381..319383,319393..319398,319765..319767)
                     /locus_tag="CDBI1_01315"
                     /note="inhibitor-cofactor binding pocket; inhibition site"
                     /db_xref="CDD:99740"
     misc_feature    order(319021..319026,319096..319098,319309..319311,
                     319318..319320,319381..319383,319396..319398)
                     /locus_tag="CDBI1_01315"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:99740"
     misc_feature    319396..319398
                     /locus_tag="CDBI1_01315"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99740"
     gene            320741..321058
                     /locus_tag="CDBI1_01320"
                     /db_xref="GeneID:12216090"
     CDS             320741..321058
                     /locus_tag="CDBI1_01320"
                     /note="COG1815 Flagellar basal body protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein"
                     /protein_id="YP_006197432.1"
                     /db_xref="GI:384359580"
                     /db_xref="GeneID:12216090"
                     /translation="MNTYDIIKMGLDATNLRSQTIANNIANINTEGYKRHYVTFEETL
                     NDAMPKIEEKTDNSKGLRVDGNNVDIEEEKVNQAMATLQYNALISFANGKIAMTKSII
                     SGR"
     misc_feature    320747..321049
                     /locus_tag="CDBI1_01320"
                     /note="flagellar basal body rod protein FlgB; Provisional;
                     Region: flgB; PRK12623"
                     /db_xref="CDD:183630"
     gene            321066..321470
                     /locus_tag="CDBI1_01325"
                     /db_xref="GeneID:12216091"
     CDS             321066..321470
                     /locus_tag="CDBI1_01325"
                     /note="COG1558 Flagellar basal body rod protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="YP_006197433.1"
                     /db_xref="GI:384359581"
                     /db_xref="GeneID:12216091"
                     /translation="MSVFSGMRISASGLTAESLKMDIISSNVANINATRGPNGEAYRR
                     KVVSFEENYDNKLGMLGVKVTSVEDDKSPLKEVYDPSHPDAKPNGYVEYPNVNILVEM
                     TDLITASRAYDSNVDTLNAQKSMISKALEIGK"
     misc_feature    321066..321467
                     /locus_tag="CDBI1_01325"
                     /note="flagellar basal body rod protein FlgC; Reviewed;
                     Region: flgC; PRK05681"
                     /db_xref="CDD:235556"
     misc_feature    321084..321170
                     /locus_tag="CDBI1_01325"
                     /note="Flagella basal body rod protein; Region:
                     Flg_bb_rod; pfam00460"
                     /db_xref="CDD:109515"
     misc_feature    <321327..321461
                     /locus_tag="CDBI1_01325"
                     /note="Flagellar basal body rod FlgEFG protein C-terminal;
                     Region: Flg_bbr_C; pfam06429"
                     /db_xref="CDD:219024"
     gene            321480..321797
                     /gene="fliE"
                     /locus_tag="CDBI1_01330"
                     /db_xref="GeneID:12216092"
     CDS             321480..321797
                     /gene="fliE"
                     /locus_tag="CDBI1_01330"
                     /note="COG1677 Flagellar hook-basal body protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein FliE"
                     /protein_id="YP_006197434.1"
                     /db_xref="GI:384359582"
                     /db_xref="GeneID:12216092"
                     /translation="MPITQINNLMQGAKLDNLIGETKPLTLNNKEEKKNFEDVIIDTI
                     DKVNFQQVTADDMKEKFIKGEDVSMHEVMLIGQEAQLSMQYLIEVRNKIHDAYQEMNK
                     VQI"
     misc_feature    321489..321794
                     /gene="fliE"
                     /locus_tag="CDBI1_01330"
                     /note="flagellar hook-basal body protein FliE;
                     Provisional; Region: fliE; PRK12728"
                     /db_xref="CDD:237183"
     gene            321822..323372
                     /gene="fliF"
                     /locus_tag="CDBI1_01335"
                     /db_xref="GeneID:12216093"
     CDS             321822..323372
                     /gene="fliF"
                     /locus_tag="CDBI1_01335"
                     /note="COG1766 Flagellar biosynthesis/type III secretory
                     pathway lipoprotein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar MS-ring protein"
                     /protein_id="YP_006197435.1"
                     /db_xref="GI:384359583"
                     /db_xref="GeneID:12216093"
                     /translation="MIASFKNKIKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVF
                     TAISASKNKYAVLFSELDVQDAADISAELESKKIDTKVKGSTIYVPRTEVDKLRLELA
                     PSLTGGSKGFALMDDSSSIGLTDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFG
                     ESSVFEKEAIPGSAAVYLMLKPGTTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMN
                     LLSEGILEDEDVDENNQPTNSLINVDKNKASEQALNKQLEKSILEMLEPIFGKGKVKA
                     TVNADLSFDTAEKTEIKIDPDKVAIKETRSKNSSKSATNNVQGVDANMNNQGNNNGTN
                     TEDSLDESFEYETGKIETHTIVAPGELNRLTASVAIDGKIAKGVQADVEDIVNNAIGM
                     DGARGDTLSVVSMVFDPEGKAEAKQELEEIKKEGFKKNIIKAVIGVVAVVAIGAIGYL
                     IYKKRSEREDMDYEDEDYISKSDSVDRKDNPLLGDDPELTLEEAVKMYAEEKPDQVTE
                     IIKTWLNE"
     misc_feature    321837..323369
                     /gene="fliF"
                     /locus_tag="CDBI1_01335"
                     /note="flagellar MS-ring protein; Reviewed; Region: fliF;
                     PRK06007"
                     /db_xref="CDD:235668"
     misc_feature    321906..322487
                     /gene="fliF"
                     /locus_tag="CDBI1_01335"
                     /note="Secretory protein of YscJ/FliF family; Region:
                     YscJ_FliF; cl01907"
                     /db_xref="CDD:242773"
     misc_feature    322614..323042
                     /gene="fliF"
                     /locus_tag="CDBI1_01335"
                     /note="Flagellar M-ring protein C-terminal; Region:
                     YscJ_FliF_C; pfam08345"
                     /db_xref="CDD:219803"
     gene            323385..324455
                     /locus_tag="CDBI1_01340"
                     /db_xref="GeneID:12216094"
     CDS             323385..324455
                     /locus_tag="CDBI1_01340"
                     /note="COG1536 Flagellar motor switch protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein"
                     /protein_id="YP_006197436.1"
                     /db_xref="GI:384359584"
                     /db_xref="GeneID:12216094"
                     /translation="MSTEITNVNAFDLSDINESDKKEKIEGEGLKKAAVLLMTLGPNV
                     SSDIIKSLPDKQVQKIGLEIANISSIASKERREILKEFVEINRAKDYVIEGGLEYARE
                     LLSNALGNAKANKLLEGISINTSTKPFKHIIKLDVKKILEILRDESAQTIAVLLAHME
                     PENGAEVLSYLDFDLQNEVAMRISSMGSISPEVIKVIESSLEDKLHSISGDDFKDYGG
                     VSTLVQILINSDRKTEKNILGTIEEQDPALAAQIKSHIFVFEDIVKLDDISIQKVLKE
                     VTMKDLVYALKGVDDEISDAIYRNQSSRAADALKEEMEMVGVIKVTQVEAAQQKIANI
                     VRKLEREGAITIVRNFGGDFVE"
     misc_feature    323481..324422
                     /locus_tag="CDBI1_01340"
                     /note="flagellar motor switch protein G; Validated;
                     Region: fliG; PRK05686"
                     /db_xref="CDD:235561"
     misc_feature    324096..324422
                     /locus_tag="CDBI1_01340"
                     /note="FliG C-terminal domain; Region: FliG_C; pfam01706"
                     /db_xref="CDD:190075"
     gene            324448..325179
                     /locus_tag="CDBI1_01345"
                     /db_xref="GeneID:12216095"
     CDS             324448..325179
                     /locus_tag="CDBI1_01345"
                     /note="COG1317 Flagellar biosynthesis/type III secretory
                     pathway protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein"
                     /protein_id="YP_006197437.1"
                     /db_xref="GI:384359585"
                     /db_xref="GeneID:12216095"
                     /translation="MNNKIIKSKKASYKGVLDLTIIDKVRVGESNVNKENDCRFRDEV
                     IKEAIESAEIKKNEILEEAKMNAQNIEKQAYEKGYSQGQKNGYEDGYKESYDEYTQKA
                     KDEADFIKNQADLILLQANEKMTEYIKEKNKEIVRLAINMASSVLKKHFEDEESMSDL
                     LKQIIQDYEGSSSFIVRCNSFYKDNIEKEFELFKEETSLKSSVFVIADDSIDKGNAII
                     QKENGRIIVGIDCAMEKLKEELLGE"
     misc_feature    324583..325176
                     /locus_tag="CDBI1_01345"
                     /note="Flagellar biosynthesis/type III secretory pathway
                     protein [Cell motility and secretion / Intracellular
                     trafficking and secretion]; Region: FliH; COG1317"
                     /db_xref="CDD:224236"
     gene            325183..326502
                     /locus_tag="CDBI1_01350"
                     /db_xref="GeneID:12216096"
     CDS             325183..326502
                     /locus_tag="CDBI1_01350"
                     /note="COG1157 Flagellar biosynthesis/type III secretory
                     pathway ATPase"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellum-specific ATP synthase"
                     /protein_id="YP_006197438.1"
                     /db_xref="GI:384359586"
                     /db_xref="GeneID:12216096"
                     /translation="MYKTDISIDFDKINKKIENLELTISEGRVKKIIGLTVEVEGIKA
                     FVGELCVIYNQVNKPVNCEVVGFKDKEVILMALGELTLIAPGCKVISKGIPLSVMCSD
                     NLLGKVLDGLGNPIDNSDAVLGDRYNLNNEPPDPMKRKKIRNIMETGVRAIDAFTTCG
                     EGQRIGIFAGSGVGKSTTLGMIARNAKADVNVIALIGERGREVLDFIDKDLGEEGMKK
                     SVVVCATSDKAPLVRLKGALTATAIAEYFRDQGKKVILMMDSVTRFAMAQREVGIAIG
                     EPPAQKGYTPSVFAILPKLMERTGTSDKGSITAFYTVLVDGDDFNEPIADTTRGILDG
                     HIVLSRDLANKNHYPSIDVLNSLSRLMNEIASKEDIKIASFARDMLAEYREAEDLINI
                     GAYASGTNKKIDEAIYYHEHIINFLKQGINEKSSFNETISSLRRIFE"
     misc_feature    325261..326496
                     /locus_tag="CDBI1_01350"
                     /note="flagellar protein export ATPase FliI; Region:
                     FliI_clade2; TIGR03497"
                     /db_xref="CDD:211826"
     misc_feature    325267..325461
                     /locus_tag="CDBI1_01350"
                     /note="ATP synthase alpha/beta family, beta-barrel domain;
                     Region: ATP-synt_ab_N; pfam02874"
                     /db_xref="CDD:217261"
     misc_feature    325465..326439
                     /locus_tag="CDBI1_01350"
                     /note="Flagellum-specific ATPase/type III secretory
                     pathway virulence-related protein. This group of ATPases
                     are responsible for the export of flagellum and
                     virulence-related proteins. The bacterial flagellar motor
                     is similar to the F0F1-ATPase, in that they...; Region:
                     ATPase_flagellum-secretory_path_III; cd01136"
                     /db_xref="CDD:238556"
     misc_feature    325690..325710
                     /locus_tag="CDBI1_01350"
                     /note="Walker A motif/ATP binding site; other site"
                     /db_xref="CDD:238556"
     misc_feature    325945..325959
                     /locus_tag="CDBI1_01350"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:238556"
     gene            326540..326980
                     /locus_tag="CDBI1_01355"
                     /db_xref="GeneID:12216097"
     CDS             326540..326980
                     /locus_tag="CDBI1_01355"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FliJ"
                     /protein_id="YP_006197439.1"
                     /db_xref="GI:384359587"
                     /db_xref="GeneID:12216097"
                     /translation="MDKNFKFRLQKVLDLKIKDEEEIKMEFAKIQQKKIDIESNLENL
                     ESNYSKYSISKNNDSVQNQKITINYLLALNNSIMDLSEELDKSTNELEKARKQLISKQ
                     IERKSLEKLKEKKYGQYYKEEQLKEQSTNDEFASMSYLRNRQVL"
     gene            327008..328213
                     /locus_tag="CDBI1_01360"
                     /db_xref="GeneID:12216098"
     CDS             327008..328213
                     /locus_tag="CDBI1_01360"
                     /note="COG3144 Flagellar hook-length control protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein"
                     /protein_id="YP_006197440.1"
                     /db_xref="GI:384359588"
                     /db_xref="GeneID:12216098"
                     /translation="MKIQADSYNIIKDIGNRKSSSKNKNIKNNKFEDNLYKATDHKKV
                     KDRRETSKQNVSSDKRENSDNECHLDEDKSNHLEDENTYEKDCSNNNEALHQLLNLLK
                     DNYKKDKDINTILNNLKKLSISDELKQELKLNKNILNKIANQNLELNRASTNNPNDIE
                     NLDIMKLRELLENNASEDIEVISKTTENDTKSIDLYSFDSNRIDTLNSNKQKDDSSDI
                     LEKLAGVNGNKSGNFGQVINKSVDMNKIKNDNVNLKQIESNVMDDSIKAIKHMKTNDI
                     QELTIKLRPKELGDMNIQLLKDGESMRAVVTVFNKDVFDSINKNIADLKQHLELTNVN
                     IKDVSVQMHSDNTNTSDTFDKAFEQQNRQNNQENMSKQNTNDKRNNVVIEDEIKENII
                     DDDRVDLLA"
     misc_feature    327803..328039
                     /locus_tag="CDBI1_01360"
                     /note="Flagellar hook-length control protein FliK; Region:
                     Flg_hook; pfam02120"
                     /db_xref="CDD:216885"
     gene            328231..328839
                     /locus_tag="CDBI1_01365"
                     /db_xref="GeneID:12216099"
     CDS             328231..328839
                     /locus_tag="CDBI1_01365"
                     /note="COG1843 Flagellar hook capping protein"
                     /codon_start=1
                     /transl_table=11
                     /product="basal-body rod modification protein"
                     /protein_id="YP_006197441.1"
                     /db_xref="GI:384359589"
                     /db_xref="GeneID:12216099"
                     /translation="MYGIATALAGTQVNYRSNNLSQLERNINDIANKQVRSKGNQTVT
                     DNGTPIIGQGDDADKDLFMKILVAQMGNQDPMNPQDPTEYVSQLAQFATLEKMSAMND
                     KLDILLALSNSTLINSALSMATSLIGKEVEVSGEEEEDENIVGVVKSTYIKDGEVHLE
                     LEVDGSDKTVGVKYEKLLKIGEVDANSGEENDSSEQESPEEV"
     misc_feature    <328384..328551
                     /locus_tag="CDBI1_01365"
                     /note="Flagellar hook capping protein - N-terminal region;
                     Region: FlgD; pfam03963"
                     /db_xref="CDD:202834"
     gene            328866..329849
                     /locus_tag="CDBI1_01370"
                     /db_xref="GeneID:12216100"
     CDS             328866..329849
                     /locus_tag="CDBI1_01370"
                     /note="COG4786 Flagellar basal body rod protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein"
                     /protein_id="YP_006197442.1"
                     /db_xref="GI:384359590"
                     /db_xref="GeneID:12216100"
                     /translation="MIKAMYSGVSGMKANQTKLDVIGNNVANAGTTSFKKSSARITDS
                     FYQTVLYASAPTAALGGTNLGQVGVGSKISSINKDMTQGNVQPTNRPSDLMIDGDGYL
                     PVVRQGTVMYTRDGSFNLDTGFKAADGALKNIKGGRLVNGDGYMLQGVIYDGEYKADT
                     GEFIKKGDAKGKEPIVIPLQSISPKDGTVQNVLEYNISKDGTVEFLLSDGQRTQFVYD
                     IPDGAKVGDTPAGIDKLKGTIQKVQTYAFQNPAGLDAEGGNLFKPSANSGDPQIAGAT
                     GNIIQGAIEASNVDIAEEFTEMIIASRSFQANSKIISTSDEILQEIINLKR"
     misc_feature    328866..329846
                     /locus_tag="CDBI1_01370"
                     /note="flagellar basal body rod protein FlgG; Provisional;
                     Region: flgG; PRK12636"
                     /db_xref="CDD:183640"
     misc_feature    328878..328970
                     /locus_tag="CDBI1_01370"
                     /note="Flagella basal body rod protein; Region:
                     Flg_bb_rod; pfam00460"
                     /db_xref="CDD:109515"
     misc_feature    329616..329840
                     /locus_tag="CDBI1_01370"
                     /note="Flagellar basal body rod FlgEFG protein C-terminal;
                     Region: Flg_bbr_C; pfam06429"
                     /db_xref="CDD:219024"
     gene            329862..330065
                     /locus_tag="CDBI1_01375"
                     /db_xref="GeneID:12216101"
     CDS             329862..330065
                     /locus_tag="CDBI1_01375"
                     /note="'COG1582 Uncharacterized protein, possibly involved
                     in motility'"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="YP_006197443.1"
                     /db_xref="GI:384359591"
                     /db_xref="GeneID:12216101"
                     /translation="MIRVTDLNGRRYILNSDLIVRIDSVPESRILLTTGEKNLVKESV
                     DEIVDKVIKYKRKVNVGYIRSEK"
     misc_feature    329862..330041
                     /locus_tag="CDBI1_01375"
                     /note="Flagellar protein (FlbD); Region: FlbD; pfam06289"
                     /db_xref="CDD:148101"
     gene            330065..330883
                     /locus_tag="CDBI1_01380"
                     /db_xref="GeneID:12216102"
     CDS             330065..330883
                     /locus_tag="CDBI1_01380"
                     /note="COG1291 Flagellar motor component"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="YP_006197444.1"
                     /db_xref="GI:384359592"
                     /db_xref="GeneID:12216102"
                     /translation="MKKTDSLTFIGLILSTVLVLFGAVKGSSSGLKSFFDFASILITV
                     FGSFGALMITFTIDDIKLIKDALQYSFKTMNISKLDLLNQFKTLSKKARREGLLSIES
                     DVMKIQDPFMKKGLELCIDGLEVNEIRSILELEIDSVEETNNRYSKLFKTWGTFAPAF
                     GMLGTLIGLIQMLSDLTSPDLIASGMGKALITTFYGSLLANIALNPIAYNIDEKTEKE
                     IYVKEMMLEGIISIQSGESSIVVEERLATYLSNNEKLEIMKSNKNTERAMSNGA"
     misc_feature    330065..330826
                     /locus_tag="CDBI1_01380"
                     /note="flagellar motor protein MotP; Reviewed; Region:
                     PRK06926"
                     /db_xref="CDD:180755"
     misc_feature    330077..330811
                     /locus_tag="CDBI1_01380"
                     /note="MotA/TolQ/ExbB proton channel family; Region:
                     MotA_ExbB; cl00568"
                     /db_xref="CDD:241954"
     gene            330873..331568
                     /locus_tag="CDBI1_01385"
                     /db_xref="GeneID:12216103"
     CDS             330873..331568
                     /locus_tag="CDBI1_01385"
                     /note="COG1360 Flagellar motor protein"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="YP_006197445.1"
                     /db_xref="GI:384359593"
                     /db_xref="GeneID:12216103"
                     /translation="MARKKNKKKDEINPDAWLATYADTITLILTFFVLLYATSVVDME
                     KFKNIADALKGQFSGISMFSTGSSTSEKSPIESVLVDKNDKSNLEQDLKDKVNNSNLQ
                     NSVTVKDDSRGILLELDDSILFDSGISELKADSKATLNKVYDMIKMMKNKIVIEGHTD
                     NVPVKSSTHESNWDLSSSRAVSVVRYFVEEKGMDPRLFSATGCGEYQPLVSNETAKGR
                     AENRRVNILITID"
     misc_feature    330873..331556
                     /locus_tag="CDBI1_01385"
                     /note="flagellar motor protein MotB; Reviewed; Region:
                     motB; PRK07734"
                     /db_xref="CDD:236080"
     misc_feature    330873..331046
                     /locus_tag="CDBI1_01385"
                     /note="Membrane MotB of proton-channel complex MotA/MotB;
                     Region: MotB_plug; pfam13677"
                     /db_xref="CDD:222312"
     misc_feature    331233..331556
                     /locus_tag="CDBI1_01385"
                     /note="Peptidoglycan binding domains similar to the
                     C-terminal domain of outer-membrane protein OmpA; Region:
                     OmpA_C-like; cd07185"
                     /db_xref="CDD:143586"
     misc_feature    order(331248..331253,331347..331352,331371..331373,
                     331383..331388,331395..331397,331524..331526,
                     331536..331538)
                     /locus_tag="CDBI1_01385"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:143586"
     gene            331580..332023
                     /locus_tag="CDBI1_01390"
                     /db_xref="GeneID:12216104"
     CDS             331580..332023
                     /locus_tag="CDBI1_01390"
                     /note="COG1580 Flagellar basal body-associated protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein"
                     /protein_id="YP_006197446.1"
                     /db_xref="GI:384359594"
                     /db_xref="GeneID:12216104"
                     /translation="MFKNKKIIIIILILIIFSAGAGFFILGEGGNKQIDKIAGLFIPT
                     GKGKDEVKTENLDLEEMVLKLADEGVRYLKVSITVSYDSSYKDIEKNTPLIRDNIINC
                     FMAKRADDFTADNLKNIKEEIKNTLNIQLGENVIQNIYFTNIVVQ"
     misc_feature    331745..332020
                     /locus_tag="CDBI1_01390"
                     /note="Flagellar basal body-associated protein FliL;
                     Region: FliL; pfam03748"
                     /db_xref="CDD:217711"
     gene            332038..332412
                     /locus_tag="CDBI1_01395"
                     /db_xref="GeneID:12216105"
     CDS             332038..332412
                     /locus_tag="CDBI1_01395"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="YP_006197447.1"
                     /db_xref="GI:384359595"
                     /db_xref="GeneID:12216105"
                     /translation="MILYLLKILICIPIILILIVLSLKISQGTLLKKYNDKYIKILDI
                     VNISKNNSIIILKIGEEGCIMASSSSSMNKIKDLTKEEILRIENDIKERNFKIQDFKM
                     ERIKKKYDFSRYIGKFTKKEDK"
     gene            332413..333078
                     /gene="fliP"
                     /locus_tag="CDBI1_01400"
                     /db_xref="GeneID:12216106"
     CDS             332413..333078
                     /gene="fliP"
                     /locus_tag="CDBI1_01400"
                     /note="'COG1338 Flagellar biosynthesis pathway, component
                     FliP'"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliP"
                     /protein_id="YP_006197448.1"
                     /db_xref="GI:384359596"
                     /db_xref="GeneID:12216106"
                     /translation="MELLSKLPLADVPYTSSMQLFLFLTALMFLPFVMFMMTSFVRIV
                     ISLSFLKSALGAQQAIPSQILVGLAIVLTIFIMRPVLNEINEKALQPYMKEEVTMEEA
                     MKEAEGPIKEFLLKQTRQTDLDLFVEQAGLKEKKLTRENIPLSVVVPAFAISELKTAF
                     QIGFLIYIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWNLIVKTLIL
                     GFG"
     misc_feature    332452..333075
                     /gene="fliP"
                     /locus_tag="CDBI1_01400"
                     /note="flagellar biosynthesis protein FliP; Reviewed;
                     Region: fliP; PRK05699"
                     /db_xref="CDD:235566"
     gene            333091..333360
                     /locus_tag="CDBI1_01405"
                     /db_xref="GeneID:12216107"
     CDS             333091..333360
                     /locus_tag="CDBI1_01405"
                     /note="'COG1987 Flagellar biosynthesis pathway, component
                     FliQ'"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export protein"
                     /protein_id="YP_006197449.1"
                     /db_xref="GI:384359597"
                     /db_xref="GeneID:12216107"
                     /translation="MSEFMIMSVLKNGMFTGAMIAAPVLIVSLVVGLLISVFQATTQI
                     QEQTLTFVPKLIAILLVVAIGGSWMLHTLISFTSEIFNMMSLITK"
     misc_feature    333091..333357
                     /locus_tag="CDBI1_01405"
                     /note="Flagellar biosynthesis pathway, component FliQ
                     [Cell motility and secretion / Intracellular trafficking
                     and secretion]; Region: FliQ; COG1987"
                     /db_xref="CDD:224898"
     gene            333372..335186
                     /locus_tag="CDBI1_01410"
                     /db_xref="GeneID:12216108"
     CDS             333372..335186
                     /locus_tag="CDBI1_01410"
                     /note="'COG1684 Flagellar biosynthesis pathway, component
                     FliR'"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional flagellar biosynthesis protein
                     FliR/FlhB"
                     /protein_id="YP_006197450.1"
                     /db_xref="GI:384359598"
                     /db_xref="GeneID:12216108"
                     /translation="MIFVFIRIVAFFGTLRILFPAGTPALFKSLFAIIISILISSTMQ
                     IEYATNIDNIVLFTLYGINETITGIMLGYITNLCFYSIRMAGSMMDQQMGLSMINMFD
                     PNSMTQTTLIDNLMNWTARMIFFSMDGHHVLIRGIRYSFELIPIGKSFVDNNIDYIIN
                     IFVQCFLTGFKIAIPIVLCLLMADFILGLISRSVPQLNVMIIGMPLKILVGIALFIIS
                     IPLIVNQISHLLSQIPKMYEGTFALAPMFFMGSTDKTEEATPKKKGEQRKKGNIAKSK
                     ELPVAMTLLAFTLLVPTLFSYVVDTLKSSLNYFLSLDFYMNINYSSIEKLVIAGLMDF
                     FKIFLPIAIPFLVLGIVANLFQVGILFTGETLKPNLSKLNPVSGFKNMFSMRSLSTLI
                     KDTAIISILAYIGYTFFQDNYLDILKLGNIYLPTLMYTVKDLVYSILSKICVAMIVIA
                     VADYVYQRYSHKKQLRMTKQEVKDEYKNSEGDPEIKAKIKQKQRQISSQRTMQAVPSA
                     TVIVTNPTHLSIAVRYEKGKDQAPVVVAKGADYLAFKIREIAKGNDIPIIENKPIARL
                     LYKQVEIDQEIPEDMYQAFAEILVAVYKIKNRYKVLKR"
     misc_feature    333372..335165
                     /locus_tag="CDBI1_01410"
                     /note="bifunctional flagellar biosynthesis protein
                     FliR/FlhB; Provisional; Region: PRK12772"
                     /db_xref="CDD:237199"
     misc_feature    333372..334070
                     /locus_tag="CDBI1_01410"
                     /note="flagellar biosynthesis protein FliR; Reviewed;
                     Region: fliR; PRK05701"
                     /db_xref="CDD:235568"
     misc_feature    334926..335171
                     /locus_tag="CDBI1_01410"
                     /note="Uncharacterized homolog of the cytoplasmic domain
                     of flagellar protein FhlB [Function unknown]; Region:
                     COG2257"
                     /db_xref="CDD:225166"
     gene            335195..337270
                     /gene="flhA"
                     /locus_tag="CDBI1_01415"
                     /db_xref="GeneID:12216109"
     CDS             335195..337270
                     /gene="flhA"
                     /locus_tag="CDBI1_01415"
                     /note="'COG1298 Flagellar biosynthesis pathway, component
                     FlhA'"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="YP_006197451.1"
                     /db_xref="GI:384359599"
                     /db_xref="GeneID:12216109"
                     /translation="MNKFNLKENMDVIVAFGVVGIVLMMIVPLPTFILDILLAINISL
                     SVLILLMTLFTTNVLDLSIFPTVLLVTTLFRLGLNLSSTRLILTQGYAGEVIEAFGSF
                     VVGGNYVVGIIIFLIILIVQFVVITNGSGRVSEVTARFTLDAMPGKQMSIDADLNAGV
                     IDDKTARKRRKELQQEADFYGSMDGANKFVKGDAIAGLIVTAINIIGGIVIGAVMLNM
                     TLMGAAQTYVRLTIGDGLVSQIPALLISTSAGIIVTRASTDENFGGLVSKQLTAIPKA
                     VMMTGCVLIVLGMMPGLPKPAFFSLGIGAIAAGYFLGREKKDTLEDLEFEKPDMVNPD
                     KNEVEDVTNLINVESIEVEIGYGLISLADESAGGDLLQRIASIRRQCAIDMGIVVQPI
                     RIRDNLQLNPNQYNIKIKGNVVGGYEIMPNMVLCMDPMNQGFSIFGIKTIEPTFGIEA
                     LWIESDKVEDAEIKGYTVVDSSTILITHLLDIIKSNAHELLGRQEVKTIIDAARENYS
                     AVVDELIPDLMTLGEIQKVLKNLLREKVNIKDRVTILETLADQSRNTKDIELLTEYVR
                     IALARSICNNLVDDDKTIVVATLSPETEELVSNNLQRSVNGTYPAVDPENTNKIFESI
                     QEVMNNVYFNHNIPVIVVSPKIRAPFRKLVEIVYPNLTVLSLNEIPNDIKIKAEGVVS
                     IYDDEKVYS"
     misc_feature    335195..337243
                     /gene="flhA"
                     /locus_tag="CDBI1_01415"
                     /note="flagellar biosynthesis protein FlhA; Validated;
                     Region: flhA; PRK06012"
                     /db_xref="CDD:235672"
     misc_feature    335252..337219
                     /gene="flhA"
                     /locus_tag="CDBI1_01415"
                     /note="FHIPEP family; Region: FHIPEP; pfam00771"
                     /db_xref="CDD:216110"
     gene            337245..338261
                     /gene="flhF"
                     /locus_tag="CDBI1_01420"
                     /db_xref="GeneID:12216110"
     CDS             337245..338261
                     /gene="flhF"
                     /locus_tag="CDBI1_01420"
                     /note="COG1419 Flagellar GTP-binding protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis regulator FlhF"
                     /protein_id="YP_006197452.1"
                     /db_xref="GI:384359600"
                     /db_xref="GeneID:12216110"
                     /translation="MMTKKYTANTIQDAMNLAKMELGDNITLIDKKEVRKSGIQGIFS
                     KKDIELTIGWEKRENVEQKDLKREIEQLKLIINNMGFDNKNDNDIDKICKNLLSLELN
                     EEIVESIRIDLQEMKFNGIDTSKNLVEILKKKIKIENQAINGKIALVGPPGVGKTTTI
                     AKLAAKLVFEENKKVGVITIDTYRIGAVEQLKIYTDIMNIPFKGVISPDEMELALDEM
                     KDCDVVLIDTTGRGYKNSMQILEIKNLIDKAETDNIHLVVNCTTRESDTKAIIDSYRN
                     VNFKSLIITKLDETITYGSIFNIMNYAQKPISYITTGQNVPDDIIKPNEDKIIRLLLG
                     VESI"
     misc_feature    337245..337934
                     /gene="flhF"
                     /locus_tag="CDBI1_01420"
                     /note="flagellar biosynthetic protein FlhF; Region: FlhF;
                     TIGR03499"
                     /db_xref="CDD:234232"
     misc_feature    337674..338246
                     /gene="flhF"
                     /locus_tag="CDBI1_01420"
                     /note="SRP54-type protein, GTPase domain; Region: SRP54;
                     smart00962"
                     /db_xref="CDD:214940"
     misc_feature    337680..338174
                     /gene="flhF"
                     /locus_tag="CDBI1_01420"
                     /note="The Fer4_NifH superfamily contains a variety of
                     proteins which share a common ATP-binding domain.
                     Functionally, proteins in this superfamily use the energy
                     from hydrolysis of NTP to transfer electron or ion;
                     Region: Fer4_NifH; cl17203"
                     /db_xref="CDD:247757"
     gene            338258..339136
                     /locus_tag="CDBI1_01425"
                     /db_xref="GeneID:12216111"
     CDS             338258..339136
                     /locus_tag="CDBI1_01425"
                     /note="COG0455 ATPases involved in chromosome
                     partitioning"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar number regulator"
                     /protein_id="YP_006197453.1"
                     /db_xref="GI:384359601"
                     /db_xref="GeneID:12216111"
                     /translation="MIDQAQILRKMAMEKRGLDEFIVENENVPKIITIASGKGGVGKS
                     NLATNLSICLTKLNKKVLILDADIGMSNIDIIMGVNVKGTIIDVINGEKNIEDIISQT
                     KYGVNIISGGSALNHIEDFTEAQRNKFIHSIEQIHDVDFIIIDTGAGMSKSLLSFIYC
                     STEFFLITTPEPTSLTDAYSLLKAISNFGIKRSANIIINRVIDLEEAKSTYKRIKMVV
                     DKFLNLNLELYGYIIDDKKVSLCVKKQIPFILEYPTSIASKCIIAIAKRMVSQSREDI
                     VDNKSFLRKMFSIFKS"
     misc_feature    338342..339130
                     /locus_tag="CDBI1_01425"
                     /note="Antiactivator of flagellar biosynthesis FleN, an
                     ATPase [Cell motility]; Region: flhG; COG0455"
                     /db_xref="CDD:223531"
     misc_feature    338348..>338482
                     /locus_tag="CDBI1_01425"
                     /note="FleN is a member of the Fer4_NifH superfamily. It
                     shares the common function as an ATPase, with the
                     ATP-binding domain at the N-terminus. In Pseudomonas
                     aeruginosa, FleN gene is involved in regulating the number
                     of flagella and chemotactic motility by...; Region:
                     FleN-like; cd02038"
                     /db_xref="CDD:238995"
     misc_feature    338366..338389
                     /locus_tag="CDBI1_01425"
                     /note="P-loop; other site"
                     /db_xref="CDD:238995"
     misc_feature    <338669..338953
                     /locus_tag="CDBI1_01425"
                     /note="FleN is a member of the Fer4_NifH superfamily. It
                     shares the common function as an ATPase, with the
                     ATP-binding domain at the N-terminus. In Pseudomonas
                     aeruginosa, FleN gene is involved in regulating the number
                     of flagella and chemotactic motility by...; Region:
                     FleN-like; cd02038"
                     /db_xref="CDD:238995"
     gene            339150..339851
                     /locus_tag="CDBI1_01430"
                     /db_xref="GeneID:12216112"
     CDS             339150..339851
                     /locus_tag="CDBI1_01430"
                     /note="COG1191 DNA-directed RNA polymerase specialized
                     sigma subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor for flagellar
                     operon"
                     /protein_id="YP_006197454.1"
                     /db_xref="GI:384359602"
                     /db_xref="GeneID:12216112"
                     /translation="MNREELIKENMPLVKSIARKFFIPGKGFEYQDLVNSGVIGLIDA
                     INKFDAEKGAKFSSYSYIKIKSAILDEIRNQSPISKHNLTKVNKYNRVVEKLQSKLLR
                     EPTSYEIAKELNVSEKELHDIESNIDMLNIVSLNYVIFEDTNETVQDVISDREEEAPE
                     NIIEEEEKLEILSKAISNLNEREKLILSLYYYEDLNLKEIGKVLGVSESRVSQLHRKS
                     IRNLRNKIKELKYSI"
     misc_feature    339165..339830
                     /locus_tag="CDBI1_01430"
                     /note="RNA polymerase sigma factor, FliA/WhiG family;
                     Region: FliA_WhiG; TIGR02479"
                     /db_xref="CDD:233885"
     misc_feature    339165..339377
                     /locus_tag="CDBI1_01430"
                     /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
                     /db_xref="CDD:218138"
     misc_feature    339402..339608
                     /locus_tag="CDBI1_01430"
                     /note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
                     /db_xref="CDD:146934"
     misc_feature    339663..339818
                     /locus_tag="CDBI1_01430"
                     /note="Sigma70, region (SR) 4 refers to the most
                     C-terminal of four conserved domains found in Escherichia
                     coli (Ec) sigma70, the main housekeeping sigma, and
                     related sigma-factors (SFs). A SF is a dissociable subunit
                     of RNA polymerase, it directs bacterial or...; Region:
                     Sigma70_r4; cd06171"
                     /db_xref="CDD:100119"
     misc_feature    order(339687..339689,339717..339719,339735..339740,
                     339768..339770,339774..339779,339783..339791,
                     339795..339800,339804..339806)
                     /locus_tag="CDBI1_01430"
                     /note="DNA binding residues [nucleotide binding]"
                     /db_xref="CDD:100119"
     gene            339867..340289
                     /locus_tag="CDBI1_01435"
                     /db_xref="GeneID:12216113"
     CDS             339867..340289
                     /locus_tag="CDBI1_01435"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197455.1"
                     /db_xref="GI:384359603"
                     /db_xref="GeneID:12216113"
                     /translation="MIQIILIVVSILIIVTIVINLHKESKNKDNRYFDKIFEQEYEAN
                     DRLIIAEKRRFFLDKVLAEIRSNNHIKVYENYNLIKANEERKENIFIESKKEVRQENE
                     LSLKVKHLISSGYDDVEICKMLDIGKGELSLIRSCYKI"
     gene            340274..340459
                     /locus_tag="CDBI1_01440"
                     /db_xref="GeneID:12216114"
     CDS             340274..340459
                     /locus_tag="CDBI1_01440"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197456.1"
                     /db_xref="GI:384359604"
                     /db_xref="GeneID:12216114"
                     /translation="MLQNIRILLCDKKVFLGIGIGILISTLCIMLFSNNDMSKAEIEK
                     KARALGMKYTSEMKVLE"
     gene            340500..341273
                     /gene="flgG"
                     /locus_tag="CDBI1_01445"
                     /db_xref="GeneID:12216115"
     CDS             340500..341273
                     /gene="flgG"
                     /locus_tag="CDBI1_01445"
                     /note="COG4786 Flagellar basal body rod protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgG"
                     /protein_id="YP_006197457.1"
                     /db_xref="GI:384359605"
                     /db_xref="GeneID:12216115"
                     /translation="MIRGLYTAVSAMITNQQKQNVVVNNLANMDTNGYKSKQLLTKSF
                     DELKLEGYNNYANGTKQKQIIGDISPGISMDETITNFNQGPIKTTDNKMDVAIQGKGF
                     FLVSDAAGNQFYTRNGNFRTDNQGDLITSEGYYVLGTNTATGAVGHINVGNQKFEVAK
                     DNTISLDGNAMYKFNIVDFNDYNNLKKEGDNLYSGGGAMKVNNALTIQSAIESSNVDM
                     VSEINNMMTISREYEANQKIIQAMDSKLAKIASEIGSVR"
     misc_feature    340500..341267
                     /gene="flgG"
                     /locus_tag="CDBI1_01445"
                     /note="flagellar basal body rod protein FlgG; Reviewed;
                     Region: flgG; PRK12818"
                     /db_xref="CDD:183768"
     misc_feature    340956..341198
                     /gene="flgG"
                     /locus_tag="CDBI1_01445"
                     /note="flagellar basal-body rod protein FlgF; Region:
                     flgF; TIGR02490"
                     /db_xref="CDD:233892"
     gene            341294..342055
                     /gene="flgG"
                     /locus_tag="CDBI1_01450"
                     /db_xref="GeneID:12216116"
     CDS             341294..342055
                     /gene="flgG"
                     /locus_tag="CDBI1_01450"
                     /note="COG4786 Flagellar basal body rod protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgG"
                     /protein_id="YP_006197458.1"
                     /db_xref="GI:384359606"
                     /db_xref="GeneID:12216116"
                     /translation="MYTMFYTSKTALSANQSKLDIISNNIANSDSTGYKKINMEYSDL
                     VDEVLNRPSYPTNGNDISTGTGAKATAPMRIYEQGALAPTDSKSNLAIDGEGFFRVIR
                     KDGTYAYTRNGGFNIDGLGKIVDDNGNILDVQFDAGYNYNNTNIDSTNLTVSRNGELF
                     VDNKKIGKINLYQPIGTQNFISEGDSLFVATDAAQIKQVEKVDIVQGYRERSNVSLQE
                     EFVDLIATQRAFQMNSKGIKTADEMWQIANNLRAK"
     misc_feature    341294..342049
                     /gene="flgG"
                     /locus_tag="CDBI1_01450"
                     /note="flagellar basal body rod protein FlgG; Reviewed;
                     Region: flgG; PRK12817"
                     /db_xref="CDD:183767"
     misc_feature    341306..341398
                     /gene="flgG"
                     /locus_tag="CDBI1_01450"
                     /note="Flagella basal body rod protein; Region:
                     Flg_bb_rod; pfam00460"
                     /db_xref="CDD:109515"
     misc_feature    341825..342043
                     /gene="flgG"
                     /locus_tag="CDBI1_01450"
                     /note="Flagellar basal body rod FlgEFG protein C-terminal;
                     Region: Flg_bbr_C; pfam06429"
                     /db_xref="CDD:219024"
     gene            342078..342959
                     /locus_tag="CDBI1_01455"
                     /db_xref="GeneID:12216117"
     CDS             342078..342959
                     /locus_tag="CDBI1_01455"
                     /note="COG1868 Flagellar motor switch protein"
                     /codon_start=1
                     /transl_table=11
                     /product="putative flagellar motor switch protein"
                     /protein_id="YP_006197459.1"
                     /db_xref="GI:384359607"
                     /db_xref="GeneID:12216117"
                     /translation="MNDMKEYDFGKPQSYSRENLTCLNFLLAEFCKKYKNYIIYELKC
                     NSSMIVDSIDQVNYQTFLDRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITSGG
                     TGVIKDNDRELTELDKKVLLHLMDDLVRNMHLFEGFENIQVLDTHTHINLPQLCSPTA
                     PVCVVDLKVLNDNEYIGSVSLCFPYNGLEALLESISVIEFFDNDVGDDSEEFTKKIYN
                     SVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENSKSYTATPGF
                     ISSKKGVKINDAVGKEV"
     misc_feature    342096..342656
                     /locus_tag="CDBI1_01455"
                     /note="Flagellar motor switch protein FliM; Region: FliM;
                     pfam02154"
                     /db_xref="CDD:111086"
     misc_feature    342729..342953
                     /locus_tag="CDBI1_01455"
                     /note="Surface presentation of antigens (SPOA); Region:
                     SpoA; pfam01052"
                     /db_xref="CDD:201573"
     gene            342962..343336
                     /locus_tag="CDBI1_01460"
                     /db_xref="GeneID:12216118"
     CDS             342962..343336
                     /locus_tag="CDBI1_01460"
                     /note="COG1886 Flagellar motor switch/type III secretory
                     pathway protein"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein"
                     /protein_id="YP_006197460.1"
                     /db_xref="GI:384359608"
                     /db_xref="GeneID:12216118"
                     /translation="MDNSNLISDEEAKMLLNDKVESEVDGDDELALDVSEVNRNNIQR
                     ILDLKLELSVVIGRTKMTLRDILNLHKGSLIELNTLADQDVEILIDNKVLAYGKVVVV
                     DLNFGVKITSIVSEEDMVKSLV"
     misc_feature    <343022..343300
                     /locus_tag="CDBI1_01460"
                     /note="Flagellar motor switch/type III secretory pathway
                     protein [Cell motility and secretion / Intracellular
                     trafficking and secretion]; Region: FliN; COG1886"
                     /db_xref="CDD:224798"
     gene            343368..344771
                     /locus_tag="CDBI1_01465"
                     /db_xref="GeneID:12216119"
     CDS             343368..344771
                     /locus_tag="CDBI1_01465"
                     /note="'COG1241 Predicted ATPase involved in replication
                     control, Cdc46/Mcm family'"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197461.1"
                     /db_xref="GI:384359609"
                     /db_xref="GeneID:12216119"
                     /translation="MVLILNLNDIKKDILKLNKKDSCSLYNESINNINNNCISTGLKF
                     LKQARDLNPDDVDILNLTGLVNLLKCNFDDAVESFYKSSLCEKTALCEKYINMLTSEE
                     FLIFFEKYNQLIRLINKGMYKEAIQGFKLITDQYCDLIEPYELLALLYDKEEEYIKFD
                     ECLEVLKIIDKENYLLNQENNTLDMYNSANIQTKSNVKVDDYKNEFLHKSSSNHKIND
                     YNNVTKEKSSSKNQKSSDSNKKKSIKKNKYLYIAIILGILLVGQSIYSSYKMNNLTDK
                     ISKNNETKNEESIDSNLTKKENNIEENEDMSKASNINKSNKNINKEADVKSKKNTVEN
                     EDDKDSDLFTEDELMSKANTLKSEKKTKSSIQLYKKVADIGENKGNTSEATYQVAILS
                     EKLKDYKTAEEYYKMYVENYSEKDAYFDESYYNLGMMYYNNGDLKNSKLTLKKLVNKV
                     PNSMYNNSKVKEILKEE"
     misc_feature    344409..344609
                     /locus_tag="CDBI1_01465"
                     /note="Tetratricopeptide repeat; Region: TPR_12;
                     pfam13424"
                     /db_xref="CDD:205602"
     gene            344887..346824
                     /locus_tag="CDBI1_01470"
                     /db_xref="GeneID:12216120"
     CDS             344887..346824
                     /locus_tag="CDBI1_01470"
                     /note="'COG0326 Molecular chaperone, HSP90 family'"
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein 90"
                     /protein_id="YP_006197462.1"
                     /db_xref="GI:384359610"
                     /db_xref="GeneID:12216120"
                     /translation="MEFEKGSISIHTENIFPIIKKWLYSDKDIFIRELISNGCDAVSK
                     HKRLVSLGEISENKSSDYKITVSVNKGEGTLKFIDNGIGMTEEEIKKYINQVAFSGAE
                     DFFNKYKDKMEESNDIIGHFGLGFYSAFMVSKKVQIDTLSYTEGATPVRWISEGGTEY
                     EISESDARNDRGTTITLFIDDDSKEFLDEFTVRGIINKYCSFLPVEIYLEDVERLERE
                     AKEAEEKAKKQKEDGKEEIVDAKVIEPLNDTNPLWLKSPKDCTDEEYKEFYRKVFNVF
                     DEPLFWIHLNVDYPFNLKGILYFPKLKNEFELTEGKVKLYNNQVFVADNIKEVIPEFL
                     LLLKGVIDCPDLPLNVSRSFLQNDRDVSKISKHIIKKVADKLKSLCKNEREEYNKFWD
                     DIQIFIKYGCLKDESFYEKVKECILFKTIDDEYITIQDYLEKCKDKHENKVFYVSDKE
                     QQSQYIKLFKEYDLSAVVLNSSIDTHFISFMEYKENGVKFNRIDADLSDVLKDKNENK
                     DSEENKEEIAKIEGLFKEAVGERVKNYSVEGLKNEDTPAMVLVSEQSIRMAEMQSRFA
                     GMDLGMNFEEEKTLVINENSPIIKKLVSLKDDEEKKDKITLICNQIADLALLSNKELK
                     PDELDSFVQRSNKLMSLLIEL"
     misc_feature    344887..346818
                     /locus_tag="CDBI1_01470"
                     /note="heat shock protein 90; Provisional; Region:
                     PRK05218"
                     /db_xref="CDD:235366"
     misc_feature    344974..>345291
                     /locus_tag="CDBI1_01470"
                     /note="Histidine kinase-like ATPases; This family includes
                     several ATP-binding proteins for example: histidine
                     kinase, DNA gyrase B, topoisomerases, heat shock protein
                     HSP90, phytochrome-like ATPases and DNA mismatch repair
                     proteins; Region: HATPase_c; cd00075"
                     /db_xref="CDD:238030"
     misc_feature    order(344983..344985,344995..344997,345004..345006,
                     345115..345117,345121..345123,345127..345129,
                     345133..345138,345253..345264)
                     /locus_tag="CDBI1_01470"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    344995..344997
                     /locus_tag="CDBI1_01470"
                     /note="Mg2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    order(345127..345129,345133..345135,345253..345255,
                     345259..345261)
                     /locus_tag="CDBI1_01470"
                     /note="G-X-G motif; other site"
                     /db_xref="CDD:238030"
     gene            347212..348342
                     /locus_tag="CDBI1_01475"
                     /db_xref="GeneID:12216121"
     CDS             347212..348342
                     /locus_tag="CDBI1_01475"
                     /note="'COG1454 Alcohol dehydrogenase, class IV'"
                     /codon_start=1
                     /transl_table=11
                     /product="1,3-propanediol dehydrogenase"
                     /protein_id="YP_006197463.1"
                     /db_xref="GI:384359611"
                     /db_xref="GeneID:12216121"
                     /translation="MNFNYNLPVNILFGRGRINDVGKEVSKYGKKVLIVTGKNSTKKT
                     GLLDKTIDLLKDSKIEYEVFDRVEQNPLITTIYSGVEIIKSTGCDCVLGLGGGSIMDA
                     AKSIAFSYKNPGDLNDYIFGIRQGEEALPIILVPTTSGTGSEGNCFAVLTNSETKDKK
                     SIKKNSMYAKASIIDPELMVTMPKHIIASVGFDALAHNMEAYLSNGRNPLADVQAIYG
                     IELISENLIKVYNDVNDLEAWEKITLASTIGGMTIGTAGTALPHGMEHPVSGLRDVMH
                     GKGLAALTPTIIESSWDIDIERFGNISKVLGGTCAEDCSDAIRNFLKKIDLDIKLSDL
                     GIEKSDIDWLTDNCMKISVANIKRHPKYFNKEQIKEMYHKSL"
     misc_feature    347212..348339
                     /locus_tag="CDBI1_01475"
                     /note="Alcohol dehydrogenase, class IV [Energy production
                     and conversion]; Region: EutG; COG1454"
                     /db_xref="CDD:224371"
     misc_feature    347224..348330
                     /locus_tag="CDBI1_01475"
                     /note="Iron-containing alcohol dehydrogenases-like;
                     Region: Fe-ADH1; cd08185"
                     /db_xref="CDD:173944"
     misc_feature    order(347320..347322,347497..347505,347512..347514,
                     347521..347523,347620..347625,347629..347631,
                     347686..347691,347743..347745,347767..347769,
                     347788..347790,347800..347802,347995..347997,
                     348007..348009,348037..348039)
                     /locus_tag="CDBI1_01475"
                     /note="putative active site [active]"
                     /db_xref="CDD:173944"
     misc_feature    order(347788..347790,347800..347802,347995..347997,
                     348037..348039)
                     /locus_tag="CDBI1_01475"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:173944"
     gene            348569..349591
                     /locus_tag="CDBI1_01480"
                     /db_xref="GeneID:12216122"
     CDS             348569..349591
                     /locus_tag="CDBI1_01480"
                     /note="COG1533 DNA repair photolyase"
                     /codon_start=1
                     /transl_table=11
                     /product="spore photoproduct lyase"
                     /protein_id="YP_006197464.1"
                     /db_xref="GI:384359612"
                     /db_xref="GeneID:12216122"
                     /translation="MFNPKRIIFEKGTLDTDVGKKIYNKFRDNKDVEIINISSNRIKE
                     HIPGENLYEQYRSGKQTMVVGIRKSLKFQTCKPSANYQLPLVSGCMGRCEYCYLNTQL
                     GDKPFIRVFVNVDEILEQTKKYIEDRKPQVTIFEGAATSDPVPVEPYTNSLKKTIEFF
                     GREEKGRFRFVTKYSDVDSLLDAEHNNHTEIRFSINTPRIINEHEHYTASANKRIESA
                     VKLARAGYQIGFIIAPVFLYEGWKEEYKNLIISIKEALPKDFDKKIIFEVISHRYTTK
                     AKNRILEIYPDTLLPMENEDRKFKYGQFGYGKYVYDKEQLDDMKEFFLKEINGVFKNS
                     LIKYII"
     misc_feature    348704..349588
                     /locus_tag="CDBI1_01480"
                     /note="DNA repair photolyase [DNA replication,
                     recombination, and repair]; Region: SplB; COG1533"
                     /db_xref="CDD:224450"
     misc_feature    348815..349444
                     /locus_tag="CDBI1_01480"
                     /note="Radical SAM superfamily. Enzymes of this family
                     generate radicals by combining a 4Fe-4S cluster and
                     S-adenosylmethionine (SAM) in close proximity. They are
                     characterized by a conserved CxxxCxxC motif, which
                     coordinates the conserved iron-sulfur cluster; Region:
                     Radical_SAM; cd01335"
                     /db_xref="CDD:100105"
     misc_feature    order(348833..348835,348839..348841,348845..348847,
                     348851..348859,348971..348973,348977..348982,
                     349061..349069,349148..349150,349265..349267,
                     349370..349375)
                     /locus_tag="CDBI1_01480"
                     /note="FeS/SAM binding site; other site"
                     /db_xref="CDD:100105"
     gene            349773..350684
                     /locus_tag="CDBI1_01485"
                     /db_xref="GeneID:12216123"
     CDS             349773..350684
                     /locus_tag="CDBI1_01485"
                     /note="COG2207 AraC-type DNA-binding domain-containing
                     proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="YP_006197465.1"
                     /db_xref="GI:384359613"
                     /db_xref="GeneID:12216123"
                     /translation="MHAWESIQITLDLIEANLSEEISINELANKANLSPFYYQRLFKR
                     LVNKTVMEYIKLRRLARASEYLAEHKNRILDVALNFGFASHETFTRSFKKAYGLTPEK
                     YRANPVKLNHFIKPELILNYAMVDEGVPLIADDIVIEVNRKTLSNPRTFVGIEIEVPI
                     CQLVGGETTGIAIVEELWMKLGSQRHNIPNQIPGGNEFAALYMGNAKEGNCMYMAGVE
                     VESGTSVEGYNTFELPAKEYLVCGFEAENFNELVNSAVFKADKFMERWMKKHNLTTTD
                     FAIEMYYPTTPEAAYLEHWIVPVPIEQ"
     misc_feature    349812..349937
                     /locus_tag="CDBI1_01485"
                     /note="Bacterial regulatory helix-turn-helix proteins,
                     AraC family; Region: HTH_AraC; pfam00165"
                     /db_xref="CDD:215763"
     misc_feature    349833..350084
                     /locus_tag="CDBI1_01485"
                     /note="helix_turn_helix, arabinose operon control protein;
                     Region: HTH_ARAC; smart00342"
                     /db_xref="CDD:197666"
     misc_feature    349974..350084
                     /locus_tag="CDBI1_01485"
                     /note="Bacterial regulatory helix-turn-helix proteins,
                     AraC family; Region: HTH_AraC; pfam00165"
                     /db_xref="CDD:215763"
     misc_feature    350208..350660
                     /locus_tag="CDBI1_01485"
                     /note="GyrI-like small molecule binding domain; Region:
                     GyrI-like; cl01368"
                     /db_xref="CDD:242457"
     gene            350699..351115
                     /locus_tag="CDBI1_01490"
                     /db_xref="GeneID:12216124"
     CDS             350699..351115
                     /locus_tag="CDBI1_01490"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197466.1"
                     /db_xref="GI:384359614"
                     /db_xref="GeneID:12216124"
                     /translation="MNWQDAFFQDTKPTFEQINEFINNPLWDKLNKTLVSTYNVEPKL
                     EYSKCSMQRGWNVKYKKRGKSLCTLYPQEGYFKALVIVSESNRVEVDLFINTCCDYIK
                     KIYNEVNFFNGSKWLMIQVDSLLVLNDMLELIKFRA"
     misc_feature    350723..351112
                     /locus_tag="CDBI1_01490"
                     /note="Protein of unknown function (DUF3788); Region:
                     DUF3788; pfam12663"
                     /db_xref="CDD:221696"
     gene            complement(351209..351601)
                     /locus_tag="CDBI1_01495"
                     /db_xref="GeneID:12216125"
     CDS             complement(351209..351601)
                     /locus_tag="CDBI1_01495"
                     /note="COG1733 Predicted transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="YP_006197467.1"
                     /db_xref="GI:384359615"
                     /db_xref="GeneID:12216125"
                     /translation="MSINTEKNITKNVEELTCPIRYALDIVGGKWKLPIICMLAVENP
                     IRYSSIKRKLDGITNTMLAQSLKDLESTGIVHRKQYNEIPPKVEYTLTSKGKSIVPIL
                     QQFANWGATNMQEKNTCGLSCKECRKIK"
     misc_feature    complement(351251..351574)
                     /locus_tag="CDBI1_01495"
                     /note="Predicted transcriptional regulators
                     [Transcription]; Region: COG1733"
                     /db_xref="CDD:224647"
     misc_feature    complement(351263..351526)
                     /locus_tag="CDBI1_01495"
                     /note="HxlR-like helix-turn-helix; Region: HxlR;
                     pfam01638"
                     /db_xref="CDD:201897"
     gene            351742..352137
                     /locus_tag="CDBI1_01500"
                     /db_xref="GeneID:12216126"
     CDS             351742..352137
                     /locus_tag="CDBI1_01500"
                     /note="COG5015 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197468.1"
                     /db_xref="GI:384359616"
                     /db_xref="GeneID:12216126"
                     /translation="MKALEFLNKAGVYYLATVDENNQAHVRPLGFVMEYNGKLTFCTS
                     NQKDMFKQLIFNPKVELCCIDQNLNTLRILGEAVFVTSKETQAKALEIMPSLGQMYSV
                     GDGKFEIFSIDKAKVSCCSMSGKKIDVEL"
     misc_feature    351748..352113
                     /locus_tag="CDBI1_01500"
                     /note="Pyridoxine 5'-phosphate (PNP) oxidase-like
                     proteins; Region: PNPOx_like; cl00381"
                     /db_xref="CDD:241827"
     gene            352540..352746
                     /locus_tag="CDBI1_01505"
                     /db_xref="GeneID:12216127"
     CDS             352540..352746
                     /locus_tag="CDBI1_01505"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197469.1"
                     /db_xref="GI:384359617"
                     /db_xref="GeneID:12216127"
                     /translation="MSKYSSLWEYVKKNNSQSFKLTFEEIKDIAGIEIDHSFLKYKKE
                     LNEYGYQVGKISLKEKTVIFNKID"
     gene            complement(353057..353800)
                     /locus_tag="CDBI1_01510"
                     /db_xref="GeneID:12216128"
     CDS             complement(353057..353800)
                     /locus_tag="CDBI1_01510"
                     /note="COG1387 Histidinol phosphatase and related
                     hydrolases of the PHP family"
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydrolase"
                     /protein_id="YP_006197470.1"
                     /db_xref="GI:384359618"
                     /db_xref="GeneID:12216128"
                     /translation="MNFLSDLHTHSIVSGHGYSTLLENINYCKENGIKILGTSEHGPK
                     MPGSPHRWYFHNIQNIPRIINNIIILRGCEANILDIKGNIDLEPFVIPRLDYLILSFH
                     EAVFSPNTLENNTKALINAINKHDNIEILGHLGNPNYPIDYELIIKLAIEKNILIEIN
                     NCSIKGVSRNGSSDNCKYIATLCKKYGAKIILTSDAHICFDIGNYEYSENILKEINFP
                     DELIMNYPKKLINHFHQKGKLLDVDYTNI"
     misc_feature    complement(353060..353800)
                     /locus_tag="CDBI1_01510"
                     /note="putative hydrolase; Validated; Region: PRK09248"
                     /db_xref="CDD:236429"
     misc_feature    complement(353093..353794)
                     /locus_tag="CDBI1_01510"
                     /note="Polymerase and Histidinol Phosphatase domain of
                     Ycdx like; Region: PHP_HisPPase_Ycdx_like; cd07437"
                     /db_xref="CDD:213992"
     misc_feature    complement(order(353210..353212,353216..353218,
                     353402..353404,353495..353497,353579..353581,
                     353678..353680,353753..353755,353771..353773,
                     353777..353779))
                     /locus_tag="CDBI1_01510"
                     /note="active site"
                     /db_xref="CDD:213992"
     gene            353966..356533
                     /locus_tag="CDBI1_01515"
                     /db_xref="GeneID:12216129"
     CDS             353966..356533
                     /locus_tag="CDBI1_01515"
                     /note="COG1221 Transcriptional regulators containing an
                     AAA-type ATPase domain and a DNA-binding domain"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="YP_006197471.1"
                     /db_xref="GI:384359619"
                     /db_xref="GeneID:12216129"
                     /translation="MTQKKLSRKEKVLICLKRLTEEHLNFNNGIRFGFDAEYIATEVG
                     INRSNASKELNQLIKESIIIKIKGKPVQYLYKESIESILGKKLNKGIFDNINSINEYS
                     ENDSIKDEYILESIKKENNIFNLVGCDGSLRSQIEQAKAAVIYPPKGLSTLIIGPTGV
                     GKSIFAEYMYKYSLTIKEDSDNAPFIIFNCADYSDNQQLLLAQLFGYVKGAFTGADKD
                     KYGIVHEANNGVLFLDEVHRLSAEGQEMLFLLMDKGIYRRLGEANKVHECRVMIIAAT
                     TEDPETAMLETFLRRIPVTIKIPSLEERGFQERMKLICYFFKEESVRIGVKLKVSKEV
                     IKAFILYKCKGNIGQLKSDIQLICARAFLDYMTYKRECVYVRLSLLPNNIRESLYGNN
                     RKEEFVQNFSFIGKDDIIFLPEEKDFESENLLIENKKYDLDFYGMIKETWNKLQQEGI
                     KESQIRSVIDGDIQKYSYNLMNTFIYNNSNQTAYNNIVNDSIATTVKYILQKHDKWSK
                     REGLDKLIKAIALHIQNLIERIKIGNIVKHPNKDEIMKERAYEYNIAKEILSNMSLMY
                     GVEFPEDEAIFLATFLYLSYVGLNEESIAILVIMHGESTASSMVNVANTLLDCNHAVA
                     INMGLEDRVQDILVQAVEIANKIDKGKGILILTDMGSILTFAKVIRDATGKEVKAVDM
                     VSTPIVIEATRKALTPEMTLEKLYFNIIESIKKHYGDMEVTYAEKDNGGRYFDRLLID
                     NISKTLTFLNGEKAYFILKEVINRISEHYSLVIQDELLVKFIFHCSCMIERVIIKESL
                     VYKSYEERISRNKELYLVIKESFKLVEETFDIIISDMEYANILDIFESQYDTDKFKS"
     misc_feature    354062..355324
                     /locus_tag="CDBI1_01515"
                     /note="Transcriptional regulators containing an AAA-type
                     ATPase domain and a DNA-binding domain [Transcription /
                     Signal transduction mechanisms]; Region: PspF; COG1221"
                     /db_xref="CDD:224142"
     misc_feature    354368..354865
                     /locus_tag="CDBI1_01515"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    354431..354454
                     /locus_tag="CDBI1_01515"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(354434..354457,354665..354667,354794..354796)
                     /locus_tag="CDBI1_01515"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    354653..354670
                     /locus_tag="CDBI1_01515"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    354836..354838
                     /locus_tag="CDBI1_01515"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    355502..355714
                     /locus_tag="CDBI1_01515"
                     /note="PRD domain; Region: PRD; pfam00874"
                     /db_xref="CDD:201484"
     misc_feature    355745..356110
                     /locus_tag="CDBI1_01515"
                     /note="PTS_IIA, PTS system, mannose/sorbose specific IIA
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This family...; Region:
                     PTS_IIA_man; cl00025"
                     /db_xref="CDD:241558"
     misc_feature    order(355766..355768,355811..355816,355844..355846,
                     355946..355948,356042..356044)
                     /locus_tag="CDBI1_01515"
                     /note="active pocket/dimerization site"
                     /db_xref="CDD:237978"
     misc_feature    order(355766..355768,355937..355939,355946..355948)
                     /locus_tag="CDBI1_01515"
                     /note="active site"
                     /db_xref="CDD:237978"
     misc_feature    355766..355768
                     /locus_tag="CDBI1_01515"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:237978"
     misc_feature    356240..356503
                     /locus_tag="CDBI1_01515"
                     /note="PRD domain; Region: PRD; pfam00874"
                     /db_xref="CDD:201484"
     gene            356763..357167
                     /locus_tag="CDBI1_01520"
                     /db_xref="GeneID:12216130"
     CDS             356763..357167
                     /locus_tag="CDBI1_01520"
                     /note="'COG2893 Phosphotransferase system,
                     mannose/fructose-specific component IIA'"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IIA"
                     /protein_id="YP_006197472.1"
                     /db_xref="GI:384359620"
                     /db_xref="GeneID:12216130"
                     /translation="MIGIIVMTHGSFSEEIIKSCELIAGPAERTAAIKLNRNDNIEDL
                     NKNFVEKLNELDEGDGVLVLADLLGGSPSNVASLNLKKGGKFHALTGVNLPMLLEALI
                     NREGKSLEELAEACIEAGQTGINNINKVLSSM"
     misc_feature    356766..357125
                     /locus_tag="CDBI1_01520"
                     /note="PTS_IIA, PTS system, mannose/sorbose specific IIA
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This family...; Region:
                     PTS_IIA_man; cd00006"
                     /db_xref="CDD:237978"
     misc_feature    order(356787..356789,356829..356834,356865..356867,
                     356973..356975,357066..357068)
                     /locus_tag="CDBI1_01520"
                     /note="active pocket/dimerization site"
                     /db_xref="CDD:237978"
     misc_feature    order(356787..356789,356958..356960,356973..356975)
                     /locus_tag="CDBI1_01520"
                     /note="active site"
                     /db_xref="CDD:237978"
     misc_feature    356787..356789
                     /locus_tag="CDBI1_01520"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:237978"
     gene            357191..357688
                     /locus_tag="CDBI1_01525"
                     /db_xref="GeneID:12216131"
     CDS             357191..357688
                     /locus_tag="CDBI1_01525"
                     /note="'COG3444 Phosphotransferase system,
                     mannose/fructose/N-acetylgalactosamine-specific component
                     IIB'"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IIB"
                     /protein_id="YP_006197473.1"
                     /db_xref="GI:384359621"
                     /db_xref="GeneID:12216131"
                     /translation="MSLVKYCRCDDRLIHGQVIYKWVKHLGVKKIVVVDDETTNDVIA
                     KGLIKMAAPKNIDLSILTVSESRRYFYNNQADDNVFVLIKNLDTANRMIEEGINIKKL
                     IVGRIPTGIGKKKISQNVYINKKEFLLIDEFIKKNINVSIQMVPDEEEVELNQNINRY
                     KGEFI"
     misc_feature    357209..357646
                     /locus_tag="CDBI1_01525"
                     /note="PTS system sorbose subfamily IIB component; Region:
                     PTSIIB_sorb; pfam03830"
                     /db_xref="CDD:217751"
     misc_feature    order(357212..357214,357224..357226,357233..357235)
                     /locus_tag="CDBI1_01525"
                     /note="active site"
                     /db_xref="CDD:237975"
     misc_feature    357233..357235
                     /locus_tag="CDBI1_01525"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:237975"
     gene            357691..358092
                     /locus_tag="CDBI1_01530"
                     /db_xref="GeneID:12216132"
     CDS             357691..358092
                     /locus_tag="CDBI1_01530"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system, IIa component"
                     /protein_id="YP_006197474.1"
                     /db_xref="GI:384359622"
                     /db_xref="GeneID:12216132"
                     /translation="MNKYKVIILCHGTWGKVLVEETNKNFGLSNQYEVLSLSSEKDVS
                     VFMKEVEEVVDKEDVKIIISDLYGGSTSSVAIAVAIRRGIDAINGLSLQTILIVDEEL
                     SKEDKLHTLPERIVKKNNNLCVDLIKEFKKI"
     misc_feature    357703..358047
                     /locus_tag="CDBI1_01530"
                     /note="PTS_IIA, PTS system, mannose/sorbose specific IIA
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This family...; Region:
                     PTS_IIA_man; cl00025"
                     /db_xref="CDD:206789"
     misc_feature    order(357721..357723,357763..357768,357799..357801,
                     357898..357900,357988..357990)
                     /locus_tag="CDBI1_01530"
                     /note="active pocket/dimerization site"
                     /db_xref="CDD:28890"
     misc_feature    order(357721..357723,357883..357885,357898..357900)
                     /locus_tag="CDBI1_01530"
                     /note="active site"
                     /db_xref="CDD:28890"
     misc_feature    357721..357723
                     /locus_tag="CDBI1_01530"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:28890"
     gene            358110..358598
                     /locus_tag="CDBI1_01535"
                     /db_xref="GeneID:12216133"
     CDS             358110..358598
                     /locus_tag="CDBI1_01535"
                     /note="'COG3444 Phosphotransferase system,
                     mannose/fructose/N-acetylgalactosamine-specific component
                     IIB'"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IIB"
                     /protein_id="YP_006197475.1"
                     /db_xref="GI:384359623"
                     /db_xref="GeneID:12216133"
                     /translation="MAKITLVRVDHRLIHGQVITKWVKIAQAQKIIIVDDFLGQDEFM
                     ADIYKMAAPSGVEVVILTAEDAGQAFQNNTLGDKNIFILFKNVDMANKAYKAGLKYEK
                     IQLGGIPNEAGKKMVFTAVSLGNEDVEQLNELNENGVEIVLQVIPEESSMTYENALKK
                     FK"
     misc_feature    358116..358562
                     /locus_tag="CDBI1_01535"
                     /note="PTS system sorbose subfamily IIB component; Region:
                     PTSIIB_sorb; pfam03830"
                     /db_xref="CDD:217751"
     misc_feature    order(358131..358133,358143..358145,358152..358154)
                     /locus_tag="CDBI1_01535"
                     /note="active site"
                     /db_xref="CDD:237975"
     misc_feature    358152..358154
                     /locus_tag="CDBI1_01535"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:237975"
     gene            358625..359380
                     /locus_tag="CDBI1_01540"
                     /db_xref="GeneID:12216134"
     CDS             358625..359380
                     /locus_tag="CDBI1_01540"
                     /note="'COG3715 Phosphotransferase system,
                     mannose/fructose/N-acetylgalactosamine-specific component
                     IIC'"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IIC"
                     /protein_id="YP_006197476.1"
                     /db_xref="GI:384359624"
                     /db_xref="GeneID:12216134"
                     /translation="MESVLMLAIVTGLWYWFAAGLAGYTLFSTLKSPLFIGFSLGLLW
                     GDVTTGMIVGASIEMVYLGMVAAGGNIPSDKCLAALIAIPVALQTGVNAEVAVSIAVP
                     LGVIGVLVNNLRRTGNAVLVHKADKYAEEGNTKGIWRCATLYSLIFGFVLRFPIVFVC
                     NFFGADLVQSLLDVIPQWLMNGLTVMGGILPALGFATTIFTIGKNKFLPMFIIGFFMV
                     QYFEISITAAAIFGVCIALLITFMKEDKRVGEV"
     misc_feature    358625..359341
                     /locus_tag="CDBI1_01540"
                     /note="PTS system sorbose-specific iic component; Region:
                     EII-Sor; pfam03609"
                     /db_xref="CDD:146312"
     gene            359380..360243
                     /locus_tag="CDBI1_01545"
                     /db_xref="GeneID:12216135"
     CDS             359380..360243
                     /locus_tag="CDBI1_01545"
                     /note="'COG3716 Phosphotransferase system,
                     mannose/fructose/N-acetylgalactosamine-specific component
                     IID'"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IID"
                     /protein_id="YP_006197477.1"
                     /db_xref="GI:384359625"
                     /db_xref="GeneID:12216135"
                     /translation="MQEIKNKEVKNGQGPTEVNKTRVLTKKDVTKTYLRWWWTAELSN
                     SFERMQALAVCASFTPALEKLYKKKEDLVDALKRHLQFFNTQAIWGGLIHGTVLAMEE
                     EKATEGKIPGEVISGVKNGLMGPLAGIGDTLDFGTFQTIFLALGASFGAEGSVIGAFF
                     PIMFSILLFCEGYYLFHLGYSLGRDSIKKILSGGIVNKIIDGASILGMFMMGALSATT
                     VKLSTPLSFDIGGKAIVVQDTLNMIAPGLLPLGVVFFVYWGMKYKKWTITKLLVILVV
                     LALVGSFIGIF"
     misc_feature    359446..360240
                     /locus_tag="CDBI1_01545"
                     /note="PTS system mannose/fructose/sorbose family IID
                     component; Region: EIID-AGA; pfam03613"
                     /db_xref="CDD:217640"
     gene            360290..360769
                     /locus_tag="CDBI1_01550"
                     /db_xref="GeneID:12216136"
     CDS             360290..360769
                     /locus_tag="CDBI1_01550"
                     /note="'COG0715 ABC-type nitrate/sulfonate/bicarbonate
                     transport systems, periplasmic components'"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197478.1"
                     /db_xref="GI:384359626"
                     /db_xref="GeneID:12216136"
                     /translation="MSEKMYTEKEYLEGIRGATGERAVWFYLLMKEAEKLGANPDDIC
                     KEAIYGFGKMRGQKYNVADTPGKMAEMLYNSKGQKVFEMELVENTDENGVLKFHHCPL
                     DAAWKEYGLTKEERKEICRLACYGDYGRVDCAQGVKLDFAQKCAHDDEVCELVFTKK"
     misc_feature    360353..360757
                     /locus_tag="CDBI1_01550"
                     /note="L-2-amino-thiazoline-4-carboxylic acid hydrolase;
                     Region: ATC_hydrolase; pfam14196"
                     /db_xref="CDD:222587"
     gene            360834..362141
                     /locus_tag="CDBI1_01555"
                     /db_xref="GeneID:12216137"
     CDS             360834..362141
                     /locus_tag="CDBI1_01555"
                     /note="COG0624 Acetylornithine
                     deacetylase/Succinyl-diaminopimelate desuccinylase and
                     related deacylases"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="YP_006197479.1"
                     /db_xref="GI:384359627"
                     /db_xref="GeneID:12216137"
                     /translation="MDISRSVDNSLNRTIEFLKELIKIDSQQGEPISQCPFGIGPKKS
                     LDKTLDYCASLGFSVKNIDNYIGYAEIGEGEELIGIPMHLDIVPPGEGWSVDPFSGAV
                     IDNIIYGRGVIDNKGAVSMLIHVLKNIEDMYPTINKRIRLIFGTNEETDMKCIKYYLD
                     KGEEIPSMGFTPDAMYPVVNGEKGRVHIRIEKEIKIDKSKPYIIVRGGTKENVVPSHC
                     TAKIINGIISELTTKGVAVHASNPEKGENAISKMVIKIVEDNMDFQHREDIELVSKYL
                     CSDYYGDALGINQYDEVFKNTTLNLGILKVNEEKIVCELDIRYGKNIVLNNIIDRFKK
                     VFCNGWKIEVIAHKDLHYVDESNLVLKKLLEAYEEVTDENGYTIAMGGGTYASWFKDM
                     VAFGPKFLAYKTGGHGVDERVPINHIRKNMEIYTLALIKLLEL"
     misc_feature    360834..362129
                     /locus_tag="CDBI1_01555"
                     /note="dipeptidase PepV; Reviewed; Region: PRK07318"
                     /db_xref="CDD:235988"
     misc_feature    360876..362129
                     /locus_tag="CDBI1_01555"
                     /note="M20 Peptidase Xaa-His dipeptidase (PepV) degrades
                     hydrophobic dipeptides; Region: M20_PepV; cd03888"
                     /db_xref="CDD:193509"
     misc_feature    order(361080..361082,361173..361178,361275..361280,
                     361350..361355,361467..361469,361545..361547,
                     361785..361787,361977..361982,362043..362045,
                     362049..362054)
                     /locus_tag="CDBI1_01555"
                     /note="active site"
                     /db_xref="CDD:193509"
     misc_feature    order(361080..361082,361173..361175,361275..361280,
                     361350..361352,362052..362054)
                     /locus_tag="CDBI1_01555"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:193509"
     gene            363104..364198
                     /locus_tag="CDBI1_01560"
                     /db_xref="GeneID:12216138"
     CDS             363104..364198
                     /locus_tag="CDBI1_01560"
                     /note="COG1396 Predicted transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="YP_006197480.1"
                     /db_xref="GI:384359628"
                     /db_xref="GeneID:12216138"
                     /translation="MNELNIAKTLILKRKEKGITQDELANYIGVSKASVSKWETGQSY
                     PDITFLPQLATYFNITVDELICYEPQMMKEDINKLYNKLCKDFTVKPFDEVMDEIREI
                     IKKYYSCFPLIFRMGLLIVNHYDIVDEKKRELLISEALEIFIRIQETCNDIDICRQAK
                     SMEATCYILLNQPIQVIDLLQNSNFPMINESILLAQGQMMNGQMDEARETFQLGAYQN
                     LISLVQNLVGILQNADKLQMKEIERRILAISDIFELDTLSPAIMLSSYLTQTQINLIH
                     GDNEGAIKSLRKYVDLATRDIYPIIIHGDDFFNKLDRWISEIGTGITRDDTIVKAGIV
                     AAIKNNPMFSLLSENKEYKFLIEKLSLLEE"
     misc_feature    363119..>363340
                     /locus_tag="CDBI1_01560"
                     /note="Predicted transcriptional regulators
                     [Transcription]; Region: HipB; COG1396"
                     /db_xref="CDD:224314"
     misc_feature    363122..363295
                     /locus_tag="CDBI1_01560"
                     /note="Helix-turn-helix XRE-family like proteins.
                     Prokaryotic DNA binding proteins belonging to the
                     xenobiotic response element family of transcriptional
                     regulators; Region: HTH_XRE; cd00093"
                     /db_xref="CDD:238045"
     misc_feature    order(363134..363136,363146..363148,363221..363223)
                     /locus_tag="CDBI1_01560"
                     /note="non-specific DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:238045"
     misc_feature    order(363143..363145,363218..363220)
                     /locus_tag="CDBI1_01560"
                     /note="salt bridge; other site"
                     /db_xref="CDD:238045"
     misc_feature    order(363164..363169,363200..363202,363209..363211,
                     363221..363226)
                     /locus_tag="CDBI1_01560"
                     /note="sequence-specific DNA binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238045"
     gene            364203..364403
                     /locus_tag="CDBI1_01565"
                     /db_xref="GeneID:12216139"
     CDS             364203..364403
                     /locus_tag="CDBI1_01565"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197481.1"
                     /db_xref="GI:384359629"
                     /db_xref="GeneID:12216139"
                     /translation="MENLMEYLPLLIPVIILDLILIITALVHVLRHPNYKIGNKAIWI
                     IVVLFISLIGPILYFTIGRGEE"
     misc_feature    364272..364391
                     /locus_tag="CDBI1_01565"
                     /note="Phospholipase_D-nuclease N-terminal; Region:
                     PLDc_N; pfam13396"
                     /db_xref="CDD:222100"
     gene            364403..365320
                     /locus_tag="CDBI1_01570"
                     /db_xref="GeneID:12216140"
     CDS             364403..365320
                     /locus_tag="CDBI1_01570"
                     /note="'COG1131 ABC-type multidrug transport system,
                     ATPase component'"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="YP_006197482.1"
                     /db_xref="GI:384359630"
                     /db_xref="GeneID:12216140"
                     /translation="MNIVSINGLSKGFGNRKIIDNLNFTVPEGSVFGFVGKNGAGKTT
                     TMKMVLGLLEPDSGTIDVCGEKVTYGRTSSNRHVGYLPDVPEFYNYMRPLEYLSLCGE
                     ITGLSKKEIKIRSEELLSLVGLGNEKRRIGGFSRGMKQRLGIAQALLSRPKLLICDEP
                     TSALDPVGRKEILDIMLKIKDSTTVIFSTHILSDVERICDHVAILNKGSIALSGTLSE
                     IKSMHGKDRLLLEFASNNEIQKFKSSGGIKSLLKDSEETNMEIVLHGKDIKAIQKTVI
                     STLAEMNLCPVKMELIELSLENLFLEVVK"
     misc_feature    364403..365317
                     /locus_tag="CDBI1_01570"
                     /note="ABC-type multidrug transport system, ATPase
                     component [Defense mechanisms]; Region: CcmA; COG1131"
                     /db_xref="CDD:224054"
     misc_feature    364412..365032
                     /locus_tag="CDBI1_01570"
                     /note="ATP-binding cassette domain of the drug resistance
                     transporter and related proteins, subfamily A; Region:
                     ABC_DR_subfamily_A; cd03230"
                     /db_xref="CDD:213197"
     misc_feature    364508..364531
                     /locus_tag="CDBI1_01570"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213197"
     misc_feature    order(364517..364522,364526..364534,364649..364651,
                     364874..364879,364970..364972)
                     /locus_tag="CDBI1_01570"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213197"
     misc_feature    364640..364651
                     /locus_tag="CDBI1_01570"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213197"
     misc_feature    order(364697..364699,364805..364831)
                     /locus_tag="CDBI1_01570"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213197"
     misc_feature    364862..364879
                     /locus_tag="CDBI1_01570"
                     /note="Walker B; other site"
                     /db_xref="CDD:213197"
     misc_feature    364886..364897
                     /locus_tag="CDBI1_01570"
                     /note="D-loop; other site"
                     /db_xref="CDD:213197"
     misc_feature    364958..364978
                     /locus_tag="CDBI1_01570"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213197"
     gene            365317..366075
                     /locus_tag="CDBI1_01575"
                     /db_xref="GeneID:12216141"
     CDS             365317..366075
                     /locus_tag="CDBI1_01575"
                     /note="'COG1277 ABC-type transport system involved in
                     multi-copper enzyme maturation, permease component'"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="YP_006197483.1"
                     /db_xref="GI:384359631"
                     /db_xref="GeneID:12216141"
                     /translation="MREYIAFTKKEFKENIRNYKLLSLTILFLVFGIMSPLSAKFMPD
                     LIAHFAPTLKVTTAPTALDSWTQFSGNISGLGTSLTLIVFCNILSNEYSKGTLVIMLT
                     KGLSRSSVVLSKFSIAVIIMTIGFWLSFLCTYGYTMYFWPTANLNHIIFSAFNLWLIS
                     IMYISILILGCVLFRPAFASVLLVLAATAILSLISIPKQIAPYTPNFILSKNIDLVSG
                     KVTPPEFIIPIIVTIVISIVCLLLAVVLFNKKAV"
     misc_feature    365341..>365742
                     /locus_tag="CDBI1_01575"
                     /note="ABC-2 family transporter protein; Region:
                     ABC2_membrane_2; cl17866"
                     /db_xref="CDD:248420"
     gene            366458..367531
                     /locus_tag="CDBI1_01580"
                     /db_xref="GeneID:12216142"
     CDS             366458..367531
                     /locus_tag="CDBI1_01580"
                     /note="COG2768 Uncharacterized Fe-S center protein"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur-binding protein"
                     /protein_id="YP_006197484.1"
                     /db_xref="GI:384359632"
                     /db_xref="GeneID:12216142"
                     /translation="MEKSKVYFCDLYSNSQNKNVPNNVRRLFDEAGFKDLIEKNDQVA
                     IKLHFGEKGNTTYMSPVAVRQVVDKVKDCEGKPFLTDTNTLYTGSRTNSVDHLTTAIE
                     NGFAYAVVNAPVIIADGLYSRNYENVKIDKKHFESVKIGGEIYNSSAMIVMSHFKGHE
                     AAGFGGALKNLAMGCASAAGKQMQHSDVTPVVKEKKCVGCGKCVNSCPTKAISIVDKK
                     AVIDSDVCYGCGECPTVCPTRAVTIQWESDSDVFVEKMAEYAYGAVSNKKDKVGYITF
                     VMNVTPLCDCVPWSGRPIAHDIGILASTDPVAIEQACYDLICKEMGHDVFKHEHPHVN
                     GTRIIDYACEMGMGSKEYELIKL"
     misc_feature    366467..367528
                     /locus_tag="CDBI1_01580"
                     /note="Uncharacterized Fe-S center protein [General
                     function prediction only]; Region: COG2768"
                     /db_xref="CDD:225358"
     gene            367601..367864
                     /locus_tag="CDBI1_01585"
                     /db_xref="GeneID:12216143"
     CDS             367601..367864
                     /locus_tag="CDBI1_01585"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197485.1"
                     /db_xref="GI:384359633"
                     /db_xref="GeneID:12216143"
                     /translation="MKIYYEKENSKKANVNNIPSVFAFNFLRNFLTSKEYEETRKEYF
                     INNLTKSQVNQAMKDLKWLFREYEGLEVITMESLDGVKTRIVL"
     gene            368070..369047
                     /locus_tag="CDBI1_01590"
                     /db_xref="GeneID:12216144"
     CDS             368070..369047
                     /locus_tag="CDBI1_01590"
                     /note="COG0502 Biotin synthase and related enzymes"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="YP_006197486.1"
                     /db_xref="GI:384359634"
                     /db_xref="GeneID:12216144"
                     /translation="MEKYIIKLKNKVLREKEISYEEALNLISLDTNNKNDFDILLKSA
                     NEIREYFMGRKADLCTIMNAKSGKCSEDCKFCAQSSHYKTGVEEYSLLDYNEILNRAK
                     EMESKGVHRFSLVTSGKGMSGKEFNNILNIYEGLRENTNLKLCASLGIIDYEQAKMLK
                     SAGVTTYHHNVETCRDNFHNICTTHTYKDRIKTIKDAKKAGLDVCVGGIIGMNESEEQ
                     RLKMVFEIRELNVKSFPINILNPIKNTPMENYDVLEPMEILKTTAVFRFIIPNVYIRY
                     AGGRLSLKGYDKVGFNGGVNSAIVGDYLTTVGSGIENDKKMIIEQGFEL"
     misc_feature    368175..369041
                     /locus_tag="CDBI1_01590"
                     /note="biotin synthase; Region: bioB; TIGR00433"
                     /db_xref="CDD:232973"
     misc_feature    368274..368855
                     /locus_tag="CDBI1_01590"
                     /note="Radical SAM superfamily. Enzymes of this family
                     generate radicals by combining a 4Fe-4S cluster and
                     S-adenosylmethionine (SAM) in close proximity. They are
                     characterized by a conserved CxxxCxxC motif, which
                     coordinates the conserved iron-sulfur cluster; Region:
                     Radical_SAM; cd01335"
                     /db_xref="CDD:100105"
     misc_feature    order(368274..368276,368280..368282,368286..368288,
                     368292..368300,368412..368414,368418..368423,
                     368502..368510,368577..368579,368694..368696,
                     368781..368786)
                     /locus_tag="CDBI1_01590"
                     /note="FeS/SAM binding site; other site"
                     /db_xref="CDD:100105"
     misc_feature    368772..369041
                     /locus_tag="CDBI1_01590"
                     /note="Biotin and Thiamin Synthesis associated domain;
                     Region: BATS; pfam06968"
                     /db_xref="CDD:219245"
     gene            369275..370288
                     /locus_tag="CDBI1_01595"
                     /db_xref="GeneID:12216145"
     CDS             369275..370288
                     /locus_tag="CDBI1_01595"
                     /note="COG1609 Transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose operon repressor"
                     /protein_id="YP_006197487.1"
                     /db_xref="GI:384359635"
                     /db_xref="GeneID:12216145"
                     /translation="MSITIKEIGELAGVSKTTVSKVINNKDENISQATREKILKIMKE
                     KNYVPNKLAQSLVTKKTNTIGLLIPDIRNPFFTDVSRGVEDKANEEGYNIILCNTDED
                     AKKEYEGIRTLSERMIDGIIFAASSNTNWKEANYKDIKIPTVLIDKKISMNKETLKGI
                     VKINNFEGAYIATKHLLDIGNKKIIYLSGPLQNEIAVDRLEGYKKALIECNLSYNSAY
                     VFEGKYKIEWGQEFIKNLEKIDFDAIFCANDLIAIGVIRGLKERGLSIPNDVSVVGFD
                     DIQTSSLISPSLTTVKQPSYDIGYKASEILINCLRGDKKESFDELIFKPELVIRDSTK
                     ESE"
     misc_feature    369281..370276
                     /locus_tag="CDBI1_01595"
                     /note="Transcriptional regulators [Transcription]; Region:
                     PurR; COG1609"
                     /db_xref="CDD:224525"
     misc_feature    369290..369448
                     /locus_tag="CDBI1_01595"
                     /note="Helix-turn-helix (HTH) DNA binding domain of the
                     LacI family of transcriptional regulators; Region:
                     HTH_LacI; cd01392"
                     /db_xref="CDD:143331"
     misc_feature    order(369290..369292,369314..369328,369332..369337,
                     369344..369346,369362..369367,369374..369376,
                     369413..369415,369422..369424,369431..369436,
                     369440..369445)
                     /locus_tag="CDBI1_01595"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143331"
     misc_feature    369413..369442
                     /locus_tag="CDBI1_01595"
                     /note="domain linker motif; other site"
                     /db_xref="CDD:143331"
     misc_feature    369461..370258
                     /locus_tag="CDBI1_01595"
                     /note="Ligand binding domain of the LacI tanscriptional
                     regulator family belonging to the type I
                     periplasmic-binding fold protein superfamily; Region:
                     PBP1_LacI_sugar_binding_like; cd06267"
                     /db_xref="CDD:107262"
     misc_feature    order(369461..369463,369500..369508,369515..369520,
                     369524..369529,369548..369562,369566..369568,
                     369599..369601,369608..369610,369617..369625,
                     369953..369955,370031..370033,370043..370045,
                     370052..370057)
                     /locus_tag="CDBI1_01595"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:107262"
     misc_feature    order(369497..369502,369509..369511,369644..369646,
                     369713..369715,369761..369763,369869..369871,
                     369944..369946,370100..370102,370151..370153)
                     /locus_tag="CDBI1_01595"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:107262"
     gene            370330..371220
                     /locus_tag="CDBI1_01600"
                     /db_xref="GeneID:12216146"
     CDS             370330..371220
                     /locus_tag="CDBI1_01600"
                     /note="'COG0524 Sugar kinases, ribokinase family'"
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="YP_006197488.1"
                     /db_xref="GI:384359636"
                     /db_xref="GeneID:12216146"
                     /translation="MGNIVVIGSVNMDMVCSVDKRPEKGETVLGNSFFTSPGGKGANQ
                     AISASKLGANVKMISCIGEDGLGEELIRNFRTNKVDYSLVSRNNHKSSGVAVITLCEN
                     DNSIVVVPGTNELVDIELIKKNEEEIKNADIVLLQLEIPLKTINYVVNFCFENRIKVL
                     LNPAPAVKLNEDIIEKVTYLTPNEHEYKIVFDTNEGIEEVLKKYPNKLVITEGKNGAR
                     FYDGEEIKHVSCISVDVQDTTGAGDTFNGALAVAITEGKKLYTAVEYAVVVSGLSVTK
                     LGAQSGMPYKEDVEKYLNNK"
     misc_feature    370336..371214
                     /locus_tag="CDBI1_01600"
                     /note="Sugar kinases, ribokinase family [Carbohydrate
                     transport and metabolism]; Region: RbsK; COG0524"
                     /db_xref="CDD:223598"
     misc_feature    370336..371184
                     /locus_tag="CDBI1_01600"
                     /note="Ribokinase catalyses the phosphorylation of ribose
                     to ribose-5-phosphate using ATP. This reaction is the
                     first step in the ribose metabolism. It traps ribose
                     within the cell after uptake and also prepares the sugar
                     for use in the synthesis of nucleotides...; Region:
                     ribokinase; cd01174"
                     /db_xref="CDD:238579"
     misc_feature    order(370360..370362,370366..370368,370441..370449,
                     370456..370458,370612..370614,370618..370620,
                     370645..370647,370651..370653,370744..370746,
                     371044..371049,371056..371058,371164..371166)
                     /locus_tag="CDBI1_01600"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:238579"
     misc_feature    order(370369..370371,370375..370377,370390..370410,
                     370447..370449,370609..370611,370615..370623,
                     370636..370659,370822..370824)
                     /locus_tag="CDBI1_01600"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238579"
     misc_feature    order(370876..370878,370960..370968,370975..370977,
                     371014..371016,371032..371034,371041..371043,
                     371050..371055,371062..371064,371128..371130,
                     371137..371142,371149..371151)
                     /locus_tag="CDBI1_01600"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238579"
     gene            371268..372230
                     /locus_tag="CDBI1_01605"
                     /db_xref="GeneID:12216147"
     CDS             371268..372230
                     /locus_tag="CDBI1_01605"
                     /note="'COG1879 ABC-type sugar transport system,
                     periplasmic component'"
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose ABC transporter substrate-binding
                     protein"
                     /protein_id="YP_006197489.1"
                     /db_xref="GI:384359637"
                     /db_xref="GeneID:12216147"
                     /translation="MRVRKILSLGIAGILAIGMLTGCSMEGPSKSDNKGGSDKKDLTI
                     GVSTITLQHQFFIDIDEGIKEKAKELGVKVIVNDPDQDVAKQTSAIEDFIQQNVDGMI
                     VLGTDNSAIVPAVEGAFEKMPVVTVDAVLNTENITSYVGTVSYDAGKKLGEYTKKYID
                     EKLGGKSEIAIVTDLKSQIQMQRIDGFKDALKGSANVKILNSQPGYDREESLNTVENL
                     IQSNPDVDIIYATAENSVLGAKAALESAKNKDVKIVGFDLTEEASSGITDGTILAMIQ
                     QQPKEMGRLAVEAVVKAIKGEKVEKNIPVPALLYDKENIKDFKN"
     misc_feature    371394..372185
                     /locus_tag="CDBI1_01605"
                     /note="Periplasmic sugar-binding domain of active
                     transport systems that are members of the type I
                     periplasmic binding protein (PBP1) superfamily; Region:
                     PBP1_ABC_sugar_binding_like; cd01536"
                     /db_xref="CDD:107249"
     misc_feature    371397..372161
                     /locus_tag="CDBI1_01605"
                     /note="Periplasmic binding protein domain; Region:
                     Peripla_BP_4; pfam13407"
                     /db_xref="CDD:222108"
     misc_feature    order(371430..371432,371649..371651,371814..371816,
                     372036..372038,372096..372098)
                     /locus_tag="CDBI1_01605"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:107249"
     gene            372284..373795
                     /locus_tag="CDBI1_01610"
                     /db_xref="GeneID:12216148"
     CDS             372284..373795
                     /locus_tag="CDBI1_01610"
                     /note="'COG1129 ABC-type sugar transport system, ATPase
                     component'"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter, ATP-binding protein"
                     /protein_id="YP_006197490.1"
                     /db_xref="GI:384359638"
                     /db_xref="GeneID:12216148"
                     /translation="MSNIILKLSNIAKEFPGVRALDNVNFELFHGEVHALLGENGAGK
                     STMIKILTGAHSKTSGKFIFEGKEIENISPDISKKIGINAIYQELTVFDELTVAQNIF
                     MGKEINGKVLTNDKKMNEEAKKIFDNMGIDINPNSLVKELSIAQKQMVEIARVLSSET
                     KVLIMDEPTSSISKKETEILFRLINDLKESGVSIIYISHRMEELFEICDRITIMRDGK
                     TISTLNTKDVSSEEELVNLMIDRKLDQFFPKRKVEIKEEIMRVENLTKNNVFNDISFN
                     IRKGEILGIGGLVGSKRSEIVEAIFGLRTYDSGKIYLNNEEVKFKTPSDAIENGLGLI
                     TEDRKGTGLFLQMSVKENTTMAGLKKISKFKSIIDRKKEKEILEKYIEALKIKTPHMN
                     QVIQSLSGGNQQKAIIARWLLLQPDILIMDEPTRGIDVNAKAEIYNLMGDLVESGVSI
                     IMISSEIPELISMSDRIMVMREGHISGFLEGEEMVENNVLKLAFGGKINEFNN"
     misc_feature    372284..373771
                     /locus_tag="CDBI1_01610"
                     /note="ABC-type sugar transport system, ATPase component
                     [Carbohydrate transport and metabolism]; Region: MglA;
                     COG1129"
                     /db_xref="CDD:224053"
     misc_feature    372299..372949
                     /locus_tag="CDBI1_01610"
                     /note="First domain of the ATP-binding cassette component
                     of monosaccharide transport system; Region:
                     ABC_Carb_Monos_I; cd03216"
                     /db_xref="CDD:213183"
     misc_feature    372395..372418
                     /locus_tag="CDBI1_01610"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213183"
     misc_feature    order(372404..372409,372413..372421,372542..372544,
                     372779..372784,372878..372880)
                     /locus_tag="CDBI1_01610"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213183"
     misc_feature    372533..372544
                     /locus_tag="CDBI1_01610"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213183"
     misc_feature    order(372566..372577,372719..372736)
                     /locus_tag="CDBI1_01610"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213183"
     misc_feature    372767..372784
                     /locus_tag="CDBI1_01610"
                     /note="Walker B; other site"
                     /db_xref="CDD:213183"
     misc_feature    372791..372802
                     /locus_tag="CDBI1_01610"
                     /note="D-loop; other site"
                     /db_xref="CDD:213183"
     misc_feature    372866..372886
                     /locus_tag="CDBI1_01610"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213183"
     misc_feature    373049..373708
                     /locus_tag="CDBI1_01610"
                     /note="Second domain of the ATP-binding cassette component
                     of monosaccharide transport system; Region:
                     ABC_Carb_Monos_II; cd03215"
                     /db_xref="CDD:213182"
     gene            373779..374777
                     /locus_tag="CDBI1_01615"
                     /db_xref="GeneID:12216149"
     CDS             373779..374777
                     /locus_tag="CDBI1_01615"
                     /note="'COG1172 Ribose/xylose/arabinose/galactoside
                     ABC-type transport systems, permease components'"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter, permease protein"
                     /protein_id="YP_006197491.1"
                     /db_xref="GI:384359639"
                     /db_xref="GeneID:12216149"
                     /translation="MSSITKHKEEKSSPLLTKLTSVFRDQGSAAVGLVIIFIIMSVAS
                     SNFLTLDNLINVGRQISINAILAVGMTFVIITGGIDLSVGAVIALVGTFWATTVVNYN
                     APIWVGMILALAIGTILGVIKGAIISTQKLPPFIVTLAMLTIISGASFVFTGGRPISV
                     NTDAFKMLGRGYIGPIPIPVIIMIIVVIAGHFLLKRTNFGRHVHAVGGNEEAARLCGV
                     KVNKVIVKVYALAGLLTALAGIILSSRLASGSPTVGDGAELDAIAAVVLGGTNMMGGS
                     GSIVGTCIGVGIIGILGNGLNLLSVSSYNQMIIKGLVMLFAIWINNIKLKKSAKSK"
     misc_feature    373932..374588
                     /locus_tag="CDBI1_01615"
                     /note="Branched-chain amino acid transport system /
                     permease component; Region: BPD_transp_2; pfam02653"
                     /db_xref="CDD:217165"
     misc_feature    373956..374741
                     /locus_tag="CDBI1_01615"
                     /note="Transmembrane subunit (TM) of Escherichia coli AraH
                     and related proteins. E. coli AraH is the TM of a
                     Periplasmic Binding Protein (PBP)-dependent ATP-Binding
                     Cassette (ABC) transporter involved in the uptake of the
                     monosaccharide arabinose. This group...; Region:
                     TM_PBP1_transp_AraH_like; cd06579"
                     /db_xref="CDD:119321"
     misc_feature    374409..374465
                     /locus_tag="CDBI1_01615"
                     /note="TM-ABC transporter signature motif; other site"
                     /db_xref="CDD:119321"
     gene            374961..376223
                     /locus_tag="CDBI1_01620"
                     /db_xref="GeneID:12216150"
     CDS             374961..376223
                     /locus_tag="CDBI1_01620"
                     /note="COG0624 Acetylornithine
                     deacetylase/Succinyl-diaminopimelate desuccinylase and
                     related deacylases"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="YP_006197492.1"
                     /db_xref="GI:384359640"
                     /db_xref="GeneID:12216150"
                     /translation="MKKILLDTLNSKKQEYIDYLKELVSIKTEDVGHGILGGFEKEGQ
                     EYIEKLANYIGFSVDRQEMSEELIKKAKNIYKEGNLGHNYQDRYNLICKYSDDLPGKT
                     IVFNGHVDTMPPGDISKWKYNPYRATEDNGKLYGLGTADMKSGLIASILAVKLIKDSG
                     LNVPGNVKIMSVVDEEGGGNGTINAVMNGIGGDCCIICEPSEQNLIVAHMGFVFFEVE
                     VKGVSLHCGSKWEGVNAIEKAMLLLQDIKELEHNWLMIYKHPLLPSPTINLGVINGGT
                     AGSTVPDKCVFNLCVHFLPNIMSYEQVVNDVTNVIMTRANGDLWLKDNKPNINIYQSG
                     LGFQMDKDSDFVVNAHKILEETLGKKLEIKGSTAGNDARLMKNLAEIPTLILGPGSIE
                     QCHSIDEYVEIKEYLDSILMYASLILNL"
     misc_feature    375009..376193
                     /locus_tag="CDBI1_01620"
                     /note="acetylornithine deacetylase or
                     succinyl-diaminopimelate desuccinylase; Region: DapE-ArgE;
                     TIGR01910"
                     /db_xref="CDD:233632"
     misc_feature    375012..376214
                     /locus_tag="CDBI1_01620"
                     /note="Zinc peptidases M18, M20, M28, and M42; Region:
                     Zinc_peptidase_like; cl14876"
                     /db_xref="CDD:246748"
     misc_feature    order(375282..375284,375381..375383,375483..375488,
                     375555..375557,376143..376145)
                     /locus_tag="CDBI1_01620"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:193495"
     gene            376243..376986
                     /locus_tag="CDBI1_01625"
                     /db_xref="GeneID:12216151"
     CDS             376243..376986
                     /locus_tag="CDBI1_01625"
                     /note="COG5426 Uncharacterized membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197493.1"
                     /db_xref="GI:384359641"
                     /db_xref="GeneID:12216151"
                     /translation="MKKVLIVGESWVKNITHIKGFDTFVTTHYEEAVKWLKEAIESGG
                     YETVHMPAHVAADSFPYKLEELNEYDCIILSDIGSNTFLLSNSTFIDCNSNPDRLELI
                     KEYVNNGGALIMVGGYMSFTGIDAKARFGETAIKDVLPITMIDKDDRVEKPAGIIPEV
                     IDSEHPVLKGIPTEWPKFLGYNKTVARDNCPVLATIGGDPFVAVGEFGKGKSAIFSSD
                     CAPHWGPKEFTDWKYYNKLWVNMLDWLTC"
     misc_feature    376246..376980
                     /locus_tag="CDBI1_01625"
                     /note="Protein of unknown function (DUF1355); Region:
                     DUF1355; cl17712"
                     /db_xref="CDD:248266"
     gene            377159..378544
                     /locus_tag="CDBI1_01630"
                     /db_xref="GeneID:12216152"
     CDS             377159..378544
                     /locus_tag="CDBI1_01630"
                     /note="COG1473 Metal-dependent
                     amidase/aminoacylase/carboxypeptidase"
                     /codon_start=1
                     /transl_table=11
                     /product="aminobenzoyl-glutamate utilization protein"
                     /protein_id="YP_006197494.1"
                     /db_xref="GI:384359642"
                     /db_xref="GeneID:12216152"
                     /translation="MDNLNKKFLMEYIDEIQGELRDISDKIWKNPELQYKEYYASNLQ
                     KECLKKHGFSIEGLEGMDTAFVASYGEGRPVIAVLGEYDALDGLSQKVSTTKEPIVDG
                     GAGHGCGHNLLGTGSIGAVIAVKELIKLKKLKGTIKYYGCPAEEDLSGKVLMIKKGFF
                     DGIDCAFSWHPFDINTPIRIPTLANYSVKFRYNGISAHAAQAPYNGRSALDAVELMNI
                     GCNYLREHIFDNCRVHYVTTNGGKMPNIVPDFAEVWYYIRGVKMEHVRDVFGRIVDIA
                     KGAALMTGTIMEYDIISGVYDYIPNTILTDILSQNMKLVGVQNYNEDDYYFADKLAET
                     VSIDKRSSVSSVLSGNKDITKMNLHDEVTDDTFTHNNCISLSLDIGDVSYIIPTAQCS
                     CSVWPIGISAHTWQSCASAGSDMGFKAMLLASKSISCSINDVMLDELVINKAKKELKD
                     TVGSFEYTPII"
     misc_feature    377195..378502
                     /locus_tag="CDBI1_01630"
                     /note="M20 Peptidase Aminoacylase 1-like protein 2
                     aminobenzoyl-glutamate utilization protein B subfamily;
                     Region: M20_Acy1L2_AbgB; cd05673"
                     /db_xref="CDD:193548"
     misc_feature    order(377480..377482,377486..377488,377594..377596,
                     377666..377668,378365..378367)
                     /locus_tag="CDBI1_01630"
                     /note="putative metal binding site [ion binding]; other
                     site"
                     /db_xref="CDD:193548"
     gene            complement(378881..379525)
                     /locus_tag="CDBI1_01635"
                     /db_xref="GeneID:12216153"
     CDS             complement(378881..379525)
                     /locus_tag="CDBI1_01635"
                     /note="COG0778 Nitroreductase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197495.1"
                     /db_xref="GI:384359643"
                     /db_xref="GeneID:12216153"
                     /translation="MNNLDKNNVNEVLDMLLRTRRSIRSFTKEVPSKGLIEEIIETGR
                     LAPYAILSVAKQTDFRHFFVISNNSLQMNKIKTILVDVIKTQISVNEKKAKNNITLQS
                     FITSLKMQVEKGVLGIGTAPYLIIVAERRGIPPIEQKSLSHVMQNMWLKSTALGLGFE
                     LVSVIGRLSDNKDFCDILGVPTGEYGFDACAIGFPTTSVTREGRAIPHPSIKWI"
     misc_feature    complement(378944..379477)
                     /locus_tag="CDBI1_01635"
                     /note="Nitroreductase family; Region: Nitroreductase;
                     pfam00881"
                     /db_xref="CDD:216169"
     misc_feature    complement(order(379028..379030,379037..379039,
                     379397..379399,379451..379453,379457..379459,
                     379463..379465))
                     /locus_tag="CDBI1_01635"
                     /note="FMN binding site [chemical binding]; other site"
                     /db_xref="CDD:239015"
     misc_feature    complement(order(379076..379078,379085..379090,
                     379097..379102,379106..379108))
                     /locus_tag="CDBI1_01635"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239015"
     gene            379789..380403
                     /locus_tag="CDBI1_01640"
                     /db_xref="GeneID:12216154"
     CDS             379789..380403
                     /locus_tag="CDBI1_01640"
                     /note="COG1309 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="YP_006197496.1"
                     /db_xref="GI:384359644"
                     /db_xref="GeneID:12216154"
                     /translation="MKKVSIDRRTIRTKKMIRSALAELIDEKGFNNISVTDLTQRADI
                     NRGTFYLHYVDKYDLLERIENEIIQEIEEETKHLDSSNMMEIDTSSEPLPFMVKLFEY
                     FRKNSVIIKSILGPKGDPTFERKIKKFIETNLFEKQKLINFNIDEAIISEEYFIQYIL
                     SADLGVIQYWLEKNMKESPEEMALILARMSLLGPLRAVGIRKDS"
     misc_feature    379837..379968
                     /locus_tag="CDBI1_01640"
                     /note="Bacterial regulatory proteins, tetR family; Region:
                     TetR_N; pfam00440"
                     /db_xref="CDD:201228"
     misc_feature    380047..380304
                     /locus_tag="CDBI1_01640"
                     /note="Transcriptional regulator C-terminal region;
                     Region: TetR_C_8; pfam14278"
                     /db_xref="CDD:222643"
     misc_feature    complement(380994..381441)
                     /note="potential frameshift: common BLAST hit:
                     gi|170754594|ref|YP_001780490.1| acetyltransferase"
     gene            382139..383050
                     /locus_tag="CDBI1_01655"
                     /db_xref="GeneID:12216155"
     CDS             382139..383050
                     /locus_tag="CDBI1_01655"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197497.1"
                     /db_xref="GI:384359645"
                     /db_xref="GeneID:12216155"
                     /translation="MHYKINELENKYNLYNKVVQKGVFMFGYVKINKMDLTFREYDYY
                     KAYYCGLCKYLKRNHGEISRFSLNYDITFLIVLLTAVYNPESISTEEVCIVNPFKKKK
                     VITNDITEYAASMNILLTYYKLEDNLMDDKRIKDKLAYYIYKNKLKLAYEKYPEKAEY
                     IKQQLNELNKLEKDKNINIDEVSSIFGNIMGEVFVYKKDENERNLRMIGFNIGKYIYL
                     LDAYEDLDEDFKKGRYNPFIEYIDKNDELKEKVKKIIVTSLGFLARGIDNLNLNKNVG
                     IIENIIYSGVYLRYINILESRGGKNVQ"
     gene            383040..383483
                     /locus_tag="CDBI1_01660"
                     /db_xref="GeneID:12216156"
     CDS             383040..383483
                     /locus_tag="CDBI1_01660"
                     /note="COG0457 FOG: TPR repeat"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197498.1"
                     /db_xref="GI:384359646"
                     /db_xref="GeneID:12216156"
                     /translation="MYSNTYNNENFMRARAFIENSEFKKAYDFLKTLTDKCAEWYYLT
                     GFSAMNIGYYEEGEDFLKRAKFMEPENSEYSDALRSYTQYRNDYSNRADNYNRRRRND
                     LDGCCCCCCDDCCCCLGDDCCENCAKLWCLDSCCECFGGDLITCC"
     misc_feature    383070..383255
                     /locus_tag="CDBI1_01660"
                     /note="Tetratricopeptide repeat; Region: TPR_16;
                     pfam13432"
                     /db_xref="CDD:222123"
     gene            383494..383985
                     /locus_tag="CDBI1_01665"
                     /db_xref="GeneID:12216157"
     CDS             383494..383985
                     /locus_tag="CDBI1_01665"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197499.1"
                     /db_xref="GI:384359647"
                     /db_xref="GeneID:12216157"
                     /translation="MSIKVAYGGVLLALNVILLTLTNIIPVNTLFIMGLASLLVSIVI
                     MEWGFKSGIAFYIGSIVLGFIVMASKSQWIVYSLTFGIYGIVKYLIEKDRSIYIEYFM
                     KLVFANIMILILYFLLRTIVYIPINIFIIGSFEIAFIVYDYVYSSFIGYYNNRLRKML
                     FKK"
     gene            383989..384171
                     /locus_tag="CDBI1_01670"
                     /db_xref="GeneID:12216238"
     CDS             383989..384171
                     /locus_tag="CDBI1_01670"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197500.1"
                     /db_xref="GI:384359648"
                     /db_xref="GeneID:12216238"
                     /translation="MIFIFNFNEIVVWISVNDISEYTLKHKAKFNIFLVQHIKALIFS
                     QSFYMLDINIRYNISF"
     gene            complement(384187..384915)
                     /locus_tag="CDBI1_01675"
                     /db_xref="GeneID:12216239"
     CDS             complement(384187..384915)
                     /locus_tag="CDBI1_01675"
                     /note="COG0560 Phosphoserine phosphatase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase"
                     /protein_id="YP_006197501.1"
                     /db_xref="GI:384359649"
                     /db_xref="GeneID:12216239"
                     /translation="MKNIAAFFDIDGTLYRDSLMVEHFKKLIKYDIIDQKNWYKHARD
                     TFMDWDKRQGNYDDYLLEICDLYVDSLKGLDKTCINFTSDQVIKLKADRVYKYTRSRI
                     EWHLNQGHIVIFISGSPGFLVEKMAKKYNVTDFLGSDYVFENNIFTGTVIPMWDSISK
                     NNAINDFVVKYDLDLSNSYAYGDTNGDINMLKRVGNPIAINPTKELLSQISLDEEISK
                     NVEIIVERKDIIYSLSTDVNIVDI"
     misc_feature    complement(384286..384915)
                     /locus_tag="CDBI1_01675"
                     /note="Phosphoserine phosphatase [Amino acid transport and
                     metabolism]; Region: SerB; COG0560"
                     /db_xref="CDD:223634"
     misc_feature    complement(384298..384903)
                     /locus_tag="CDBI1_01675"
                     /note="haloacid dehalogenase-like hydrolase; Region: HAD;
                     cl17202"
                     /db_xref="CDD:247756"
     gene            385040..386128
                     /locus_tag="CDBI1_01680"
                     /db_xref="GeneID:12216240"
     CDS             385040..386128
                     /locus_tag="CDBI1_01680"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197502.1"
                     /db_xref="GI:384359650"
                     /db_xref="GeneID:12216240"
                     /translation="MNFNFAKATNSRLMGSLGLIINWIDDENNHFCQYFLLDAEGLGL
                     ADYVSLNNPTQEEAYMEEERLMGGFGSDRVELTKDESLFLVSYFGNKNLYYDKLLPGD
                     KCEYIDIIKNYKTDLIIEKLYNKICKRVDEEVEFINYMTMRFIAWDRESLKYFSGSDE
                     IANMHITNINGTLLKNVVSDKGQGRYISEALYEDNDGYYICKIAFCISKCYETGFRIN
                     SLLVTDKELMYDFEVFDEISKSEFVSVYSVNSPEEFAGVFYRENPFLLKSNMNEGIFF
                     TRFNFNNDHVKENVYIINNDMKAIYYLMGNKFFIGTYNENDCNYINEISQSNYSDYIK
                     FEEKFFFEQNALYDFAESGSLDFDDFLE"
     gene            complement(386566..387414)
                     /locus_tag="CDBI1_01685"
                     /db_xref="GeneID:12216241"
     CDS             complement(386566..387414)
                     /locus_tag="CDBI1_01685"
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat assembly asparagine-rich protein"
                     /protein_id="YP_006197503.1"
                     /db_xref="GI:384359651"
                     /db_xref="GeneID:12216241"
                     /translation="MSNKKKKDLDTSYMPYLDPANYADYITNEEIPQDELRNDPQISN
                     GYTKIPNNQNINNLYPNNVNHYPKSSNSPNNLPNTNNTSGNMNYNTSATNNMPNNMNN
                     NTGMPNNMSNNMNSNMGMPNNMPNNMNSNMGMPNNMSNNMNSNMGMPNNMPNNMNSNM
                     GMPNNMPNNMNSNMGMPNNMPNNMNSNMGMPNNVPNNMNSNMGYNMNNTMGIPNFSCN
                     QNMPPNVLMMIPGVICHNTMQGMPVVMPSTMPPNIYPTPYGSSNMSIQGIPQATNIEE
                     FDEEEM"
     gene            387613..387978
                     /locus_tag="CDBI1_01690"
                     /db_xref="GeneID:12216242"
     CDS             387613..387978
                     /locus_tag="CDBI1_01690"
                     /note="COG0640 Predicted transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="YP_006197504.1"
                     /db_xref="GI:384359652"
                     /db_xref="GeneID:12216242"
                     /translation="MREEINDCNCNIVHEEIVTEAKSTMPDEEMLYDLAELFKVFGDT
                     TRVKILYALFANEMCVCDIASLLNMTHSAISHQLRVLKQARLVKFRREGKTVYYSLDD
                     SHISQIFDCGLNHIRETYK"
     misc_feature    387724..387918
                     /locus_tag="CDBI1_01690"
                     /note="Arsenical Resistance Operon Repressor and similar
                     prokaryotic, metal regulated homodimeric repressors. ARSR
                     subfamily of helix-turn-helix bacterial transcription
                     regulatory proteins (winged helix topology). Includes
                     several proteins that appear to...; Region: HTH_ARSR;
                     cd00090"
                     /db_xref="CDD:238042"
     misc_feature    order(387724..387729,387733..387735,387742..387744,
                     387751..387756,387763..387768,387775..387777,
                     387865..387867)
                     /locus_tag="CDBI1_01690"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238042"
     misc_feature    order(387727..387732,387742..387750,387787..387795,
                     387820..387831,387835..387840,387847..387852,
                     387856..387861,387877..387885,387898..387906)
                     /locus_tag="CDBI1_01690"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:238042"
     misc_feature    order(387787..387789,387796..387798)
                     /locus_tag="CDBI1_01690"
                     /note="putative Zn2+ binding site [ion binding]; other
                     site"
                     /db_xref="CDD:238042"
     gene            388001..390388
                     /locus_tag="CDBI1_01695"
                     /db_xref="GeneID:12216243"
     CDS             388001..390388
                     /locus_tag="CDBI1_01695"
                     /note="COG2217 Cation transport ATPase"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-transporting ATPase"
                     /protein_id="YP_006197505.1"
                     /db_xref="GI:384359653"
                     /db_xref="GeneID:12216243"
                     /translation="MEANNLIKKEFILGGLNCAHCAEEINNKVSKLQEVKSSNLNFIN
                     KKLIVNIKESFNEDTTIEKIIDIIDSTEPGLDIQISSKENASSKTSIKKELILGGLNC
                     AHCAEEINNKVSKLKEVESSNLNFVNKKLTVNISNNFKEDDVINKIKEIINSTEPGLD
                     IQVGSTDKVKGRTTEKSGAVNDTNKKELVPLIIGALVYIFGIYQTATGYESQFSNIVF
                     IVAYVIVGGDVLLRAIRNISKGRVFDENFLMALATVGALTIGESSEAVGVMLFYKVGE
                     YLQGVAVGKSRKSITSLMQIRPDYANLKFNSEVKVVSPEEVNVGDIIVVKPGEKVPLD
                     GVVVDGVSMLDTSALTGESVLREVEKGDEILSGVINKNALLSIEVTKSFGESTVSKIL
                     DLVENSSIKKSKTENFISKFSRYYTPIVVIAALLIAFVPPLVISGEVFSDWLYRGLIF
                     LVVSCPCALVLSIPLSFFSGIGFASKNGILIKGSNYLEALRSVDTVVFDKTGTLTKGV
                     FNVTKLNPEGISEEELLEYAAIAEVNSNHPIAKSILSYYNKKIDLDTIDSYEEIAAYG
                     IRVKHNGNFILAGNEKLMKKENISYSSAKEVGTVVYIAVDKVYRGYIVISDEVKEDSK
                     NAIRSLKAIGVKEVVMLTGDNEKVAKNIAQELELDTVYSNLLPNEKVDRLEDLYEGRT
                     EKEKIAFVGDGINDAPVLARADVGIAMGGLGSDAAIEAADVVLMTDEPSKISKAIEIA
                     NKTNKIVWQNIIFALGVKIIVMILGAGGVATMWEAIFADVGVALIAVVNAMRAMR"
     misc_feature    388274..390385
                     /locus_tag="CDBI1_01695"
                     /note="Cation transport ATPase [Inorganic ion transport
                     and metabolism]; Region: ZntA; COG2217"
                     /db_xref="CDD:225127"
     misc_feature    388280..388465
                     /locus_tag="CDBI1_01695"
                     /note="Heavy-metal-associated domain; Region: HMA;
                     pfam00403"
                     /db_xref="CDD:215902"
     misc_feature    order(388298..388306,388313..388315)
                     /locus_tag="CDBI1_01695"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    388802..389467
                     /locus_tag="CDBI1_01695"
                     /note="E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122"
                     /db_xref="CDD:215733"
     misc_feature    389825..390175
                     /locus_tag="CDBI1_01695"
                     /note="Soluble P-type ATPase [General function prediction
                     only]; Region: COG4087"
                     /db_xref="CDD:226572"
     gene            390970..392482
                     /locus_tag="CDBI1_r18400"
                     /db_xref="GeneID:12216244"
     rRNA            390970..392482
                     /locus_tag="CDBI1_r18400"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:12216244"
     misc_feature    392722..395543
                     /note="potential RNA of insufficient length (23S ribosomal
                     RNA)"
     gene            395720..395836
                     /locus_tag="CDBI1_r18378"
                     /db_xref="GeneID:12216245"
     rRNA            395720..395836
                     /locus_tag="CDBI1_r18378"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:12216245"
     gene            396014..396622
                     /locus_tag="CDBI1_01700"
                     /db_xref="GeneID:12216246"
     CDS             396014..396622
                     /locus_tag="CDBI1_01700"
                     /note="COG0586 Uncharacterized membrane-associated
                     protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197506.1"
                     /db_xref="GI:384359654"
                     /db_xref="GeneID:12216246"
                     /translation="MSVINSFILQYGLISVFVLIMIEYACFPLPSEVVLPLCGAIAAR
                     NHFGFLTILILSIIAGILGSIFCYTVGNWGGKSIINKIIEICPKAKKGIFASQDYFNK
                     YSSISVCVCRLIPLCRTYISFIAGIAGQNIITFVISSIVGITIWNTSLISIGYIFSES
                     WVRIMSHYNDYKFLVLIIPISIIFIGFVIKSFIHKKHHKIRL"
     misc_feature    396044..396517
                     /locus_tag="CDBI1_01700"
                     /note="Uncharacterized membrane-associated protein
                     [Function unknown]; Region: DedA; COG0586"
                     /db_xref="CDD:223659"
     misc_feature    396098..396478
                     /locus_tag="CDBI1_01700"
                     /note="SNARE associated Golgi protein; Region:
                     SNARE_assoc; pfam09335"
                     /db_xref="CDD:220186"
     gene            complement(397163..397936)
                     /locus_tag="CDBI1_01705"
                     /db_xref="GeneID:12216247"
     CDS             complement(397163..397936)
                     /locus_tag="CDBI1_01705"
                     /note="'COG1277 ABC-type transport system involved in
                     multi-copper enzyme maturation, permease component'"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="YP_006197507.1"
                     /db_xref="GI:384359655"
                     /db_xref="GeneID:12216247"
                     /translation="MWKLLWAECQKIRRSKIVWITFFASIMIAVIVFAGGQDVYNDPD
                     LHYGLKSVYDGSRYIDNAGWYMDAVQPWSTFFVLPAVIALLGSYIICREEEEDTIKSL
                     RLIPINETKLTIAKMIITFIFSILLYLLLFTITFLTESVLHFSDLSTKLVLSCMKEYF
                     LDGIGVFFAISPIIALVSRMKKGYWLALVFTEVYSIAGLFAGMSNVLQTFFPIAAIFN
                     ISGYYITTGEKIMGSIISLLLCACLSAFILKGLKHNEKN"
     misc_feature    complement(<397586..397933)
                     /locus_tag="CDBI1_01705"
                     /note="ABC-2 family transporter protein; Region:
                     ABC2_membrane_2; cl17866"
                     /db_xref="CDD:248420"
     misc_feature    complement(397262..397918)
                     /locus_tag="CDBI1_01705"
                     /note="ABC-2 family transporter protein; Region:
                     ABC2_membrane_4; pfam12730"
                     /db_xref="CDD:221739"
     gene            complement(397947..398684)
                     /locus_tag="CDBI1_01710"
                     /db_xref="GeneID:12216248"
     CDS             complement(397947..398684)
                     /locus_tag="CDBI1_01710"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="YP_006197508.1"
                     /db_xref="GI:384359656"
                     /db_xref="GeneID:12216248"
                     /translation="MLKLIQTEFLKLRRRKLIWLMLLSALIMPFFALLYFNYFGKTGV
                     EPTKFYKWSAFGYTLWIILPVVLGIFCTMLIHEENQYDMLKQLWIVPISKMGYFFSKF
                     FVVLIYSICFMLITAVASVLFSVLSGYVVFSWASILYLLKKCLEIGVITAFVMLPILA
                     IATSQKGYILPICITLVYAFSGFVIMTINMYLHPLSSMGVIIMRNKDIPGLIFSQEIN
                     VPLAFLCICIWSIVSVLFASIALGRRK"
     misc_feature    complement(<398295..398678)
                     /locus_tag="CDBI1_01710"
                     /note="lantibiotic protection ABC transporter permease
                     subunit, MutG family; Region: lanti_perm_MutG; TIGR03733"
                     /db_xref="CDD:163445"
     misc_feature    complement(397980..398663)
                     /locus_tag="CDBI1_01710"
                     /note="ABC-2 family transporter protein; Region:
                     ABC2_membrane_4; pfam12730"
                     /db_xref="CDD:221739"
     gene            complement(398677..399600)
                     /locus_tag="CDBI1_01715"
                     /db_xref="GeneID:12216249"
     CDS             complement(398677..399600)
                     /locus_tag="CDBI1_01715"
                     /note="'COG1131 ABC-type multidrug transport system,
                     ATPase component'"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="YP_006197509.1"
                     /db_xref="GI:384359657"
                     /db_xref="GeneID:12216249"
                     /translation="MNDFVIETKQLTKIYGNQTVVDKVNLHVKKGRIYGLLGRNGAGK
                     TTIMKMILGLTSITYGEVDVFGENIKGCEKRVYPRIGAIIETPGFYPNLTGTENLEIF
                     AKLRGTAAPNSVKRALEIVGLPYKNKKLFSKYSLGMKQRLGIANAILHDPELLVLDEP
                     TNGLDPIGIAEMRKFIRDLSVEHGKTILISSHILSEISLLADDIGIIDHGVLLEESSM
                     SELEKKNSKYILLQVSDIPKTSLILERQFNTKDYSVQDDHTLRLYNTTLDMGEINKAL
                     VMQNVTVISSQLCNDTLEDYFKKITGGEGIA"
     misc_feature    complement(398692..399588)
                     /locus_tag="CDBI1_01715"
                     /note="ABC-type multidrug transport system, ATPase
                     component [Defense mechanisms]; Region: CcmA; COG1131"
                     /db_xref="CDD:224054"
     misc_feature    complement(398971..399585)
                     /locus_tag="CDBI1_01715"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:247755"
     misc_feature    complement(399466..399489)
                     /locus_tag="CDBI1_01715"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(order(399025..399027,399124..399129,
                     399346..399348,399463..399471,399475..399480))
                     /locus_tag="CDBI1_01715"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(399346..399357)
                     /locus_tag="CDBI1_01715"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(399172..399201)
                     /locus_tag="CDBI1_01715"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(399124..399141)
                     /locus_tag="CDBI1_01715"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(399106..399117)
                     /locus_tag="CDBI1_01715"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(399019..399039)
                     /locus_tag="CDBI1_01715"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            complement(399757..400680)
                     /locus_tag="CDBI1_01720"
                     /db_xref="GeneID:12216250"
     CDS             complement(399757..400680)
                     /locus_tag="CDBI1_01720"
                     /note="COG0642 Signal transduction histidine kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="YP_006197510.1"
                     /db_xref="GI:384359658"
                     /db_xref="GeneID:12216250"
                     /translation="MNTSVYLLLILALSLIIIAYLVSVLLRVRIQLTLIKDALEDIKN
                     GNLNRRILTDENDITKQICYDINEIAINSQFQLIQQKQSEQAYKQLMTSLSHDVKTPL
                     ASLVGYLEAVESKIVVGEEKDEYIHVASNKAHYLKNFVENLFEWVKLDSKEQVFHFDI
                     FDLNELSRNIISDWIPVLESSHFEYEFDIPEIEYFLRIDANAYTRIINNLLQNIITHS
                     SGNKMTLRIFENKEQAQIIITDNGKGISSDNLPHIFERLYQCDHSRASKGNGLGLAIA
                     KELINAHKGNITANSTPGMGTEFTILLPKAL"
     misc_feature    complement(399763..400602)
                     /locus_tag="CDBI1_01720"
                     /note="Signal transduction histidine kinase [Signal
                     transduction mechanisms]; Region: BaeS; COG0642"
                     /db_xref="CDD:223715"
     misc_feature    complement(400237..400431)
                     /locus_tag="CDBI1_01720"
                     /note="Histidine Kinase A (dimerization/phosphoacceptor)
                     domain; Histidine Kinase A dimers are formed through
                     parallel association of 2 domains creating 4-helix
                     bundles; usually these domains contain a conserved His
                     residue and are activated via...; Region: HisKA; cd00082"
                     /db_xref="CDD:119399"
     misc_feature    complement(order(400252..400254,400264..400266,
                     400273..400275,400285..400287,400294..400296,
                     400306..400308,400357..400359,400366..400368,
                     400378..400380,400387..400389,400399..400401,
                     400411..400413))
                     /locus_tag="CDBI1_01720"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119399"
     misc_feature    complement(400393..400395)
                     /locus_tag="CDBI1_01720"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:119399"
     misc_feature    complement(399772..400068)
                     /locus_tag="CDBI1_01720"
                     /note="Histidine kinase-like ATPases; This family includes
                     several ATP-binding proteins for example: histidine
                     kinase, DNA gyrase B, topoisomerases, heat shock protein
                     HSP90, phytochrome-like ATPases and DNA mismatch repair
                     proteins; Region: HATPase_c; cd00075"
                     /db_xref="CDD:238030"
     misc_feature    complement(order(399784..399786,399790..399795,
                     399808..399810,399814..399816,399862..399873,
                     399946..399951,399955..399957,399961..399963,
                     399967..399969,400033..400035,400042..400044,
                     400054..400056))
                     /locus_tag="CDBI1_01720"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    complement(400042..400044)
                     /locus_tag="CDBI1_01720"
                     /note="Mg2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    complement(order(399865..399867,399871..399873,
                     399949..399951,399955..399957))
                     /locus_tag="CDBI1_01720"
                     /note="G-X-G motif; other site"
                     /db_xref="CDD:238030"
     gene            complement(400682..401383)
                     /locus_tag="CDBI1_01725"
                     /db_xref="GeneID:12216251"
     CDS             complement(400682..401383)
                     /locus_tag="CDBI1_01725"
                     /note="COG0745 Response regulators consisting of a
                     CheY-like receiver domain and a winged-helix DNA-binding
                     domain"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator"
                     /protein_id="YP_006197511.1"
                     /db_xref="GI:384359659"
                     /db_xref="GeneID:12216251"
                     /translation="MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKN
                     RHTLSLVILDIMMPDIDGFQVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLT
                     KPFSINELMARVNSLIRRYTMLNPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTS
                     KEFDLLAFLASNKGRVFTKKQIYTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFY
                     ILTVRGVGYRFNKEA"
     misc_feature    complement(400685..401374)
                     /locus_tag="CDBI1_01725"
                     /note="Response regulators consisting of a CheY-like
                     receiver domain and a winged-helix DNA-binding domain
                     [Signal transduction mechanisms / Transcription]; Region:
                     OmpR; COG0745"
                     /db_xref="CDD:223816"
     misc_feature    complement(401030..401371)
                     /locus_tag="CDBI1_01725"
                     /note="Signal receiver domain; originally thought to be
                     unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
                     recently identified in eukaroytes ETR1 Arabidopsis
                     thaliana; this domain receives the signal from the sensor
                     partner in a two-component systems; Region: REC; cd00156"
                     /db_xref="CDD:238088"
     misc_feature    complement(order(401072..401077,401084..401086,
                     401141..401143,401198..401200,401222..401224,
                     401357..401362))
                     /locus_tag="CDBI1_01725"
                     /note="active site"
                     /db_xref="CDD:238088"
     misc_feature    complement(401222..401224)
                     /locus_tag="CDBI1_01725"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238088"
     misc_feature    complement(order(401198..401206,401210..401215))
                     /locus_tag="CDBI1_01725"
                     /note="intermolecular recognition site; other site"
                     /db_xref="CDD:238088"
     misc_feature    complement(401069..401077)
                     /locus_tag="CDBI1_01725"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238088"
     misc_feature    complement(400697..400981)
                     /locus_tag="CDBI1_01725"
                     /note="Effector domain of response regulator. Bacteria and
                     certain eukaryotes like protozoa and higher plants use
                     two-component signal transduction systems to detect and
                     respond to changes in the environment. The system consists
                     of a sensor histidine kinase and...; Region: trans_reg_C;
                     cd00383"
                     /db_xref="CDD:238225"
     misc_feature    complement(order(400706..400708,400721..400723,
                     400757..400762,400784..400786,400793..400795,
                     400847..400852,400907..400909))
                     /locus_tag="CDBI1_01725"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238225"
     gene            complement(401376..401564)
                     /locus_tag="CDBI1_01730"
                     /db_xref="GeneID:12216252"
     CDS             complement(401376..401564)
                     /locus_tag="CDBI1_01730"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197512.1"
                     /db_xref="GI:384359660"
                     /db_xref="GeneID:12216252"
                     /translation="MEYMSCPEVAKKWGISERRVQKLCEESRIPGVSKLGYMWLIPKN
                     AEKPVDGRAKRRKEVQYE"
     misc_feature    complement(<401436..401558)
                     /locus_tag="CDBI1_01730"
                     /note="Helix-turn-helix domain; Region: HTH_17; pfam12728"
                     /db_xref="CDD:205047"
     gene            401793..402722
                     /locus_tag="CDBI1_01735"
                     /db_xref="GeneID:12216253"
     CDS             401793..402722
                     /locus_tag="CDBI1_01735"
                     /note="COG0714 MoxR-like ATPases"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197513.1"
                     /db_xref="GI:384359661"
                     /db_xref="GeneID:12216253"
                     /translation="MDIIDNLRVQGVDEKLIEDVLYFRNYYGLEKDLEYRVTKSKTYF
                     YGKDILSMCIAAILEEENILLSGPKATGKNLLADNLGEIFNRPQWNTSFHINTDSSTL
                     IGTDTFIDNEVKLRRGSVYECAINGGFGVFDEINMAKNDAIVVVHSALDYRRIIDVPG
                     YERVNLHPATRFIGTMNYEYAGTKELNEALVSRFMVIDIPPIEEDKLMMILKNEFSDA
                     DEEKLIHFAGIFLDLQLKSQNGEISSKAIDLRGLMASLKTIRRGLKPTLAINMGLTGK
                     TFDVYEKEMVGDVIKTRIPNKWESIDVFPISHI"
     misc_feature    401877..>402464
                     /locus_tag="CDBI1_01735"
                     /note="MoxR-like ATPases [General function prediction
                     only]; Region: COG0714"
                     /db_xref="CDD:223786"
     misc_feature    401976..402374
                     /locus_tag="CDBI1_01735"
                     /note="AAA domain (dynein-related subfamily); Region:
                     AAA_5; pfam07728"
                     /db_xref="CDD:219538"
     gene            402736..404508
                     /locus_tag="CDBI1_01740"
                     /db_xref="GeneID:12216254"
     CDS             402736..404508
                     /locus_tag="CDBI1_01740"
                     /note="COG4548 Nitric oxide reductase activation protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197514.1"
                     /db_xref="GI:384359662"
                     /db_xref="GeneID:12216254"
                     /translation="MKWIYDDYEFENRANNLSWTIAGDYNESIDISEKDYSSKEIGLY
                     FAIIAGARRKYVDWDIVKKYLTNRIRKGYNKDIILGLIQVILNTIVEEKVIKDRPGIE
                     DIRRNAYKDIVSRFTKIHNDNIMDKIKYTFVLYNMDKHPALDSMTRRIVNDIRNIDTN
                     QDMMEILKALDVIYLTYFEYILNGEENSLIDENNVESVEVNFDTFADFMYEELYSDEE
                     ENIIESDIDSISSSMLVEGVGDFDDSKCSNSADRVIYVDEDTANKIYSKIEHYYGKTY
                     LSKGEIKKIETQNCRNVHEGCRIHFTDGVLRSECNNVFQLKYVTRQKENNLGKFREHA
                     RMYRQQIKRLKESLSRILIEENAKSRVYSDCGTILANRAWRVGRSNNNKIFYKDIENE
                     KGKYVIDILLDASGSQSRNQGNVAIQAYIIANALTEVGIPNRVMGFSSFLDYTILKRF
                     KDYDDSIKNSENIFEYFCAGNNRDGLAIKSICSGLINRDEENKILIVLSDGRPNDVKI
                     GKSSERTLRGEKAYRGIVGLRDTANEVRKARKQNILVLGVFTGKESELEAERLIYGND
                     FIYSRDITRFSDVVSMYLKKIIRN"
     misc_feature    403921..404394
                     /locus_tag="CDBI1_01740"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; Region: vWFA;
                     cl00057"
                     /db_xref="CDD:241578"
     misc_feature    order(403942..403944,404149..404151,404233..404235)
                     /locus_tag="CDBI1_01740"
                     /note="metal ion-dependent adhesion site (MIDAS); other
                     site"
                     /db_xref="CDD:238119"
     gene            405021..405773
                     /locus_tag="CDBI1_01745"
                     /db_xref="GeneID:12216255"
     CDS             405021..405773
                     /locus_tag="CDBI1_01745"
                     /note="'COG0310 ABC-type Co2+ transport system, permease
                     component'"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt transport protein"
                     /protein_id="YP_006197515.1"
                     /db_xref="GI:384359663"
                     /db_xref="GeneID:12216255"
                     /translation="MKQNIKLGVIAALMLIVLTPVTSNAMHIMEGYLPVKWSIAWGVI
                     FIPFFLVGLKSIGKIVKQDPKKKVLLALCGAFVFVLSALKIPSVTGSCSHPTGVGLGA
                     IMFGPSVMFVLGTIVLIFQALLLAHGGITTLGANAFSMAIIGPIISFLIFKALKKKDG
                     NNAMPVFLAAAIGDLATYTVTSIQLALAFPDPSGGVMASAIKFLGIFFMTQIPIAIAE
                     GILTVIVYNLITENGEKSILENNDKGVKANEC"
     misc_feature    405096..405713
                     /locus_tag="CDBI1_01745"
                     /note="cobalt transport protein CbiM; Validated; Region:
                     PRK08319"
                     /db_xref="CDD:181384"
     misc_feature    405099..405710
                     /locus_tag="CDBI1_01745"
                     /note="Cobalt uptake substrate-specific transmembrane
                     region; Region: CbiM; pfam01891"
                     /db_xref="CDD:216768"
     gene            405763..406047
                     /locus_tag="CDBI1_01750"
                     /db_xref="GeneID:12216256"
     CDS             405763..406047
                     /locus_tag="CDBI1_01750"
                     /note="'COG1930 ABC-type cobalt transport system,
                     periplasmic component'"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt transport protein"
                     /protein_id="YP_006197516.1"
                     /db_xref="GI:384359664"
                     /db_xref="GeneID:12216256"
                     /translation="MSAKTKTKTNILLLLLVVALIIFPLLVNSGAEYGGADGQAESEI
                     TKINPDYEPWFSSPYEPPSGEIESLLFSAQAALGAGVIGYILGVQKGKRS"
     misc_feature    <405844..406041
                     /locus_tag="CDBI1_01750"
                     /note="cobalt transport protein CbiN; Provisional; Region:
                     PRK02898"
                     /db_xref="CDD:179494"
     gene            406050..406748
                     /locus_tag="CDBI1_01755"
                     /db_xref="GeneID:12216257"
     CDS             406050..406748
                     /locus_tag="CDBI1_01755"
                     /note="'COG0619 ABC-type cobalt transport system, permease
                     component CbiQ and related transporters'"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt transport protein"
                     /protein_id="YP_006197517.1"
                     /db_xref="GI:384359665"
                     /db_xref="GeneID:12216257"
                     /translation="MLIIDKYAYTNRLSKVNPNKKVAIGVIFLIASMVIKNIFVLSGI
                     MILMSILVVCVAGIDLKNYLKLLRIPMYFLFLSIGITLVNISFNKADLLYSFEIFSFN
                     VGISKASIDMSIHVLFRAMSCLTCVYFCILTTPFNQLIFFFKKMHLPDTFVELSMLIY
                     RFIFIFLEEFSEIYKSQELRFGYINLKTSYKSLGILGSMLYKRLMTRYDDMCISLDIK
                     LYDGKFHIVGDNDV"
     misc_feature    406050..406727
                     /locus_tag="CDBI1_01755"
                     /note="Cobalt transport protein; Region: CbiQ; cl00463"
                     /db_xref="CDD:241880"
     gene            406741..407559
                     /locus_tag="CDBI1_01760"
                     /db_xref="GeneID:12216258"
     CDS             406741..407559
                     /locus_tag="CDBI1_01760"
                     /note="'COG1122 ABC-type cobalt transport system, ATPase
                     component'"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt transporter ATP-binding subunit"
                     /protein_id="YP_006197518.1"
                     /db_xref="GI:384359666"
                     /db_xref="GeneID:12216258"
                     /translation="MFKINNLTYQYEKNTNALLNINMDFSKGNVIGIIGSNGSGKSTL
                     FMNLMGILKPTSGEILFKEEKLKYDKRSLYNLRKNVGIVFQDPEKQIFYSKVYDDIAF
                     AMRNIGIDEKIIKERINKALVAVNGIDFIDRPVHFLSYGQKKRVAIASVIAMENEIIL
                     LDEPTAGLDPVSTRSIVDIIKGLNKDNIKIVISSHDMNLMYEICDYIYVLDKGILIDE
                     GKAENVFVNENNIIQAGLESPWLVKVHRNMNLPLFKKEEDLYKYWKERELNTNK"
     misc_feature    406741..407544
                     /locus_tag="CDBI1_01760"
                     /note="cobalt transporter ATP-binding subunit;
                     Provisional; Region: cbiO; PRK13638"
                     /db_xref="CDD:184198"
     misc_feature    406747..407379
                     /locus_tag="CDBI1_01760"
                     /note="First domain of the ATP-binding cassette component
                     of cobalt transport system; Region:
                     ABC_cobalt_CbiO_domain1; cd03225"
                     /db_xref="CDD:213192"
     misc_feature    406843..406866
                     /locus_tag="CDBI1_01760"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213192"
     misc_feature    order(406852..406857,406861..406869,406993..406995,
                     407224..407229,407323..407325)
                     /locus_tag="CDBI1_01760"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213192"
     misc_feature    406984..406995
                     /locus_tag="CDBI1_01760"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213192"
     misc_feature    407152..407181
                     /locus_tag="CDBI1_01760"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213192"
     misc_feature    407212..407229
                     /locus_tag="CDBI1_01760"
                     /note="Walker B; other site"
                     /db_xref="CDD:213192"
     misc_feature    407236..407247
                     /locus_tag="CDBI1_01760"
                     /note="D-loop; other site"
                     /db_xref="CDD:213192"
     misc_feature    407311..407331
                     /locus_tag="CDBI1_01760"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213192"
     gene            407814..410078
                     /locus_tag="CDBI1_01765"
                     /db_xref="GeneID:12216259"
     CDS             407814..410078
                     /locus_tag="CDBI1_01765"
                     /note="COG0210 Superfamily I DNA and RNA helicases"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="YP_006197519.1"
                     /db_xref="GI:384359667"
                     /db_xref="GeneID:12216259"
                     /translation="MNLDTLNPAQREAVEKTEGPVLILAGAGSGKTKVLTTRIAYLIE
                     DKGVQAPNILAITFTNKAANEMRERVEQNIGPETKDMWISTFHSCCVRILRKDINKIG
                     YNRSFVIYDSADQVTLVKDCLKELNLSDKVFEPKAVISAISGAKDKLYTPKQFKDINM
                     ADNRMVKIADIYALYQDRLKRNSALDFDDLILKTVELFKANDEVLAYYRSRFRYIMVD
                     EYQDTSKAQYELIKLLAREHQNICVVGDDDQSIYGWRGADIRNILEFEKDYDNVHVVK
                     LEQNYRSTQVILDAANKVISNNIERKRKKLWSEKKEGELIKIQLTGSEIEEADFIADS
                     IAQIARKENRPYKDFAVLYRANAQARPVEDALNRSQIPYNIYGGTKFYERKEIKDLLA
                     YLRVIQNPQDDISIKRIINVPRRGIGLRTIEKIEDRANLKQESIYSVLIDIETNSDIS
                     TKARASISGFVDIIGTLRTIKEVYPVSKLIEKVLDTTGYMDELVEIRNKNEKDLTGKG
                     EEAQDRIDNLREFISIALEFESSNDDTYENKDLETFLTSIALTSESNDEEDNDRVSLM
                     TIHTSKGLEFPVVFLTGMEEGLFPISRAIKSMSDSQIEEERRLCYVGITRAKEELYMS
                     LTEKRTLYGKTNVAIASRFMEELPEECIERLYKVKKELSYSKASYNMLDKYTKKYMST
                     ISKSKVADKVNATIKDSNKETNPDDIKLGSKVHHPKFGVGTVVSIIGTDVTIAFDQQG
                     IKKINKEYTTLNIL"
     misc_feature    407820..410045
                     /locus_tag="CDBI1_01765"
                     /note="ATP-dependent DNA helicase PcrA; Region: pcrA;
                     TIGR01073"
                     /db_xref="CDD:233261"
     misc_feature    407847..408077
                     /locus_tag="CDBI1_01765"
                     /note="Part of AAA domain; Region: AAA_19; pfam13245"
                     /db_xref="CDD:222005"
     misc_feature    <409509..409682
                     /locus_tag="CDBI1_01765"
                     /note="Family description; Region: UvrD_C_2; pfam13538"
                     /db_xref="CDD:222209"
     gene            410095..411393
                     /locus_tag="CDBI1_01770"
                     /db_xref="GeneID:12216260"
     CDS             410095..411393
                     /locus_tag="CDBI1_01770"
                     /note="COG1362 Aspartyl aminopeptidase"
                     /codon_start=1
                     /transl_table=11
                     /product="putative aminopeptidase 2"
                     /protein_id="YP_006197520.1"
                     /db_xref="GI:384359668"
                     /db_xref="GeneID:12216260"
                     /translation="MDSINFAKNLIDFIYDSPSSFHAVESTKEILDKNGFEELVLNQR
                     WNLRVGGKYYVTKNLSAIVAFVVNSEDIERDGFRIIGSHSDSPTFSIKPNAEIEAEKS
                     YLKLNTECYGGAILSTWLDRPLGIAGRVVLKGDSILKPNERLIDFKKPICIIPNLAIH
                     LNRSINDGHSYNKQKDMLPLVGMLNDTLEKDNFLIKQIASNLDVNMEDIIDFDLFLYE
                     FEKGSLIGANDEFISIGRQDNLAMVHASLNALVNTKGQQGVNVMAVFDNEEVGSSTKQ
                     GADSNMLLNILERICISMGKDREGFFESIYSSFMISSDLAHAIHPNIPEKHDPTNKPI
                     MGKGPVIKINASQAYTSDGYSIAIYKNICREVNVEYQEFVNRSDERGGSTIGPISSTH
                     IDIPSVDVGSPILAMHSIRELGNVEDHYSIYKTFSKFFEI"
     misc_feature    410113..411387
                     /locus_tag="CDBI1_01770"
                     /note="M18 Peptidase Aspartyl aminopeptidase; Region:
                     M18_DAP; cd05658"
                     /db_xref="CDD:193534"
     misc_feature    410131..411384
                     /locus_tag="CDBI1_01770"
                     /note="Aminopeptidase I zinc metalloprotease (M18);
                     Region: Peptidase_M18; pfam02127"
                     /db_xref="CDD:216888"
     misc_feature    order(410341..410343,410806..410811,410896..410901,
                     411034..411039,411043..411045,411118..411120,
                     411139..411141,411238..411243,411313..411318)
                     /locus_tag="CDBI1_01770"
                     /note="active site"
                     /db_xref="CDD:193534"
     misc_feature    order(410341..410343,410806..410808,410896..410901,
                     411034..411036,411316..411318)
                     /locus_tag="CDBI1_01770"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:193534"
     gene            411424..412176
                     /locus_tag="CDBI1_01775"
                     /db_xref="GeneID:12216261"
     CDS             411424..412176
                     /locus_tag="CDBI1_01775"
                     /note="COG1752 Predicted esterase of the alpha-beta
                     hydrolase superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197521.1"
                     /db_xref="GI:384359669"
                     /db_xref="GeneID:12216261"
                     /translation="MKLGLCLEGGGAKGAYQAGVVKALYDGGINKFYSISGTSIGAIN
                     GYYLYTGNVDNLEKMWTNIKDIQNGNVKIVNNTVDNSPAIDNLRELDDSNIEEMNFYV
                     NYVEVDNKVVSEKIVDISKMPRNEAIISISYSGLLPSNPNATLGFKEQFVKDVQEGIY
                     DGFKLDGGLIRSALIEPLIGDNVDKIILISTKYNYELPEDIKKVYDEDKIIVVRPNTQ
                     FAPKDTLNFDDEFCKTIYQEGYEIGKNILDRL"
     misc_feature    411436..412146
                     /locus_tag="CDBI1_01775"
                     /note="Hypothetical patatin similar to Z1214 protein of
                     Escherichia coli; Region: Pat_hypo_Ecoli_Z1214_like;
                     cd07209"
                     /db_xref="CDD:132848"
     misc_feature    order(411451..411456,411460..411462,411538..411540,
                     411919..411921)
                     /locus_tag="CDBI1_01775"
                     /note="active site"
                     /db_xref="CDD:132848"
     misc_feature    411532..411546
                     /locus_tag="CDBI1_01775"
                     /note="nucleophile elbow; other site"
                     /db_xref="CDD:132848"
     gene            412241..412765
                     /locus_tag="CDBI1_01780"
                     /db_xref="GeneID:12216262"
     CDS             412241..412765
                     /locus_tag="CDBI1_01780"
                     /note="COG0652 Peptidyl-prolyl cis-trans isomerase
                     (rotamase) - cyclophilin family"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="YP_006197522.1"
                     /db_xref="GI:384359670"
                     /db_xref="GeneID:12216262"
                     /translation="MENKNPIVTIEMENGKEIKIELYPNIAPNTVKNFVSLVNEGYYN
                     GIIFHRVIPGFMIQGGCPNGTGMGGPGHSIKGEFSGNGFTNNLKHERGVISMARTMAP
                     NSAGSQFFIMHKNSPHLDGQYAGFGRVIEGMDTVDEIASVRTDSADKPQTPQIMKSVT
                     VETFGIDYSDVEKN"
     misc_feature    412265..412729
                     /locus_tag="CDBI1_01780"
                     /note="cyclophilin: cyclophilin-type peptidylprolyl cis-
                     trans isomerases. This family contains eukaryotic,
                     bacterial and archeal proteins which exhibit a
                     peptidylprolyl cis- trans isomerases activity (PPIase,
                     Rotamase) and in addition bind the...; Region:
                     cyclophilin; cd00317"
                     /db_xref="CDD:238194"
     misc_feature    order(412388..412390,412394..412396,412403..412408,
                     412412..412414,412529..412534,412562..412564,
                     412568..412570,412592..412597,412607..412609)
                     /locus_tag="CDBI1_01780"
                     /note="active site"
                     /db_xref="CDD:238194"
     gene            413443..413589
                     /locus_tag="CDBI1_01785"
                     /db_xref="GeneID:12216263"
     CDS             413443..413589
                     /locus_tag="CDBI1_01785"
                     /codon_start=1
                     /transl_table=11
                     /product="exosporium glycoprotein"
                     /protein_id="YP_006197523.1"
                     /db_xref="GI:384359671"
                     /db_xref="GeneID:12216263"
                     /translation="MRKIILYLNDDTFISKKYPDKNFSNLDYCLIGSKCSNSFVKEKL
                     ITFF"
     gene            413590..414183
                     /locus_tag="CDBI1_01790"
                     /db_xref="GeneID:12216264"
     CDS             413590..414183
                     /locus_tag="CDBI1_01790"
                     /codon_start=1
                     /transl_table=11
                     /product="exosporium glycoprotein"
                     /protein_id="YP_006197524.1"
                     /db_xref="GI:384359672"
                     /db_xref="GeneID:12216264"
                     /translation="MRIPDILKDKSILKAELFIHIDSNKNHIFKEKVDIEIKRISEYY
                     NLRTITWNDRVSMENIRGYLPIGISDTSNYICLNITGTIKAWAMNKYPNYGLALSLNY
                     PYQIFEFTSSRDCNKPYILVTFEDRIIDNCYPKCECLPIRITGPMGPRGATGSIGPMG
                     ATGPTGATGNSSQPIANFLVNAPSPQTLNNGNAITGW"
     gene            414352..414543
                     /locus_tag="CDBI1_01795"
                     /db_xref="GeneID:12216265"
     CDS             414352..414543
                     /locus_tag="CDBI1_01795"
                     /codon_start=1
                     /transl_table=11
                     /product="exosporium glycoprotein"
                     /protein_id="YP_006197525.1"
                     /db_xref="GI:384359673"
                     /db_xref="GeneID:12216265"
                     /translation="MAGLTTEPGGGGVLSGYFAGFLFGGTTFTINNFSSTTVGIRNGQ
                     SAGTAATLTIFRIADTVMT"
     gene            complement(414778..416376)
                     /locus_tag="CDBI1_01800"
                     /db_xref="GeneID:12216266"
     CDS             complement(414778..416376)
                     /locus_tag="CDBI1_01800"
                     /EC_number="3.6.1.1"
                     /note="COG1227 Inorganic
                     pyrophosphatase/exopolyphosphatase"
                     /codon_start=1
                     /transl_table=11
                     /product="putative manganese-dependent inorganic
                     pyrophosphatase"
                     /protein_id="YP_006197526.1"
                     /db_xref="GI:384359674"
                     /db_xref="GeneID:12216266"
                     /translation="MSLLVFGHKNPDTDSICSAISLAHLKNKLGIKATAYALGDIRKE
                     AKYALDYFKVDAPEILDNVRIQVRDLNYDKVVPLTPTSSILEAYNLMDEKNVKTLPVT
                     YDDGTFAGIITMKEIAKNLLHQHFTTIHTSLSNICKNLNGTILVDCGEDIKGRVVTLS
                     FGMETLIETLKEGDIAIVGDRYDSIEYAIDTKVKLLILTNHTEISKDLLALAKINGVS
                     VVSVESDNYKTSNVINQCSFLDSIEATENLITFKEDDYMDEIKEIMLETNFRSYPILD
                     DDNKFLGLVSKGHLLNPSKKNVVLVDHNEYAQSADGIEQANIVEIIDHHKLGGISTDV
                     PMSFRVMPVGCNSTIIYQMYKENNVEIPYEIAGLLLSAILSDTLLFKSPTTTDMDKKA
                     CEELSKIAKVDMEKYAMDMFKCGTSLDEYTIEEIVNMDFKEFNMSGHRVGIGQVFTLD
                     IDSIFAKKDEFLSYINSTDYDKLILAVTDIIKEGSYLIYKAEDSLIANAFDVEGVQGT
                     FAPGVVSRKKQLVPNLTTAIKNFK"
     misc_feature    complement(414787..416376)
                     /locus_tag="CDBI1_01800"
                     /note="putative manganese-dependent inorganic
                     pyrophosphatase; Provisional; Region: PRK14869"
                     /db_xref="CDD:237843"
     misc_feature    complement(416017..416352)
                     /locus_tag="CDBI1_01800"
                     /note="This cd contains two tandem repeats of the
                     cystathionine beta-synthase (CBS pair) domains associated
                     with a DRTGG domain upstream. The function of the DRTGG
                     domain, named after its conserved residues, is unknown.
                     CBS is a small domain originally...; Region:
                     CBS_pair_DRTGG_assoc2; cd04597"
                     /db_xref="CDD:239970"
     misc_feature    complement(415669..415974)
                     /locus_tag="CDBI1_01800"
                     /note="DRTGG domain; Region: DRTGG; pfam07085"
                     /db_xref="CDD:219291"
     misc_feature    complement(415501..415647)
                     /locus_tag="CDBI1_01800"
                     /note="CBS domain; Region: CBS; pfam00571"
                     /db_xref="CDD:201313"
     misc_feature    complement(414793..415155)
                     /locus_tag="CDBI1_01800"
                     /note="DHHA2 domain; Region: DHHA2; pfam02833"
                     /db_xref="CDD:202421"
     gene            417254..419896
                     /locus_tag="CDBI1_01805"
                     /db_xref="GeneID:12216267"
     CDS             417254..419896
                     /locus_tag="CDBI1_01805"
                     /note="COG1012 NAD-dependent aldehyde dehydrogenases"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="YP_006197527.1"
                     /db_xref="GI:384359675"
                     /db_xref="GeneID:12216267"
                     /translation="MEKKEKVVEKSNVEVCSPEIVNSVETLRMRLEEIRLAQKEFATF
                     TQEQVDKIFLAASTAANQQRIPLAKMAVEETGMGIVEDKVIKNHFASEYIYNAYKDTK
                     TCGVIEKDEAFGFTRIAEPVGVLSAVIPTTNPTSTAIFKSLIALKTRNGIIFSPHPRA
                     KNCTIEAARVVHDAAVKAGAPKGLIGWVDVPSIELTNVVMAEADLILATGGPGMVKSA
                     YSSGKPAVGVGPGNVPAIIDESADIKMAVSSILVSKSFDNGMICASEQAVIVPEKIYE
                     EVKKEFKYRGAHFLNKEETEKVGKVVIIDGSLNARIVGQPAHVIAKMADVEVPKTARI
                     IIGEVESVELNEPFAHEKLSPVLAMYKSKSFEDAVAKAEKLVADGGYGHTSSLYADSI
                     NHPDRVEKFVNAMKTCRVLVNTPSSQGGIGDLYNFKLAPSLTLGCGSWGGNSVSENVG
                     VKHLLNIKTVAERRENMLWFRAPEKVYFKKGCLGVAAREFKDVMDKKKAFIVTDSFLY
                     NNGYTKKLTDLLDEMGIKHTTFFDVAPDPTLACAREGAKAMADFQPDLIIAVGGGSAM
                     DAGKIMWVMYEHPEVDFQDLAMRFMDIRKRVYVFPKMGEKAYFAAIPTSAGTGSEVTP
                     FAVITDQDSGVKYPLADYELMPNMAIIDADMMMEMPPRLTAASGVDALTHALEAYVSM
                     LRTEPADGLALQAGKIIFEYLPRAYKNGKNDKEAREKMAMASTMAGMSFANAFLGICH
                     SLAHKLGAFHHVQHGVANALLINEVIKFNCAEAPNKMGAFSQYRYPDCIQRYAEFASF
                     AGIKGNTDQEKVDNLIKAIDELKARVGLPKTIKEAGVEESKFLETLDVMVEQAFDDQC
                     TGANPRYPLMSELKEIYLKVYYGK"
     misc_feature    417305..419884
                     /locus_tag="CDBI1_01805"
                     /note="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase; Provisional; Region: PRK13805"
                     /db_xref="CDD:237515"
     misc_feature    417344..418642
                     /locus_tag="CDBI1_01805"
                     /note="Coenzyme A acylating aldehyde dehydrogenase (ACDH),
                     ALDH family 20-like; Region: ALDH_F20_ACDH; cd07122"
                     /db_xref="CDD:143440"
     misc_feature    418037..418039
                     /locus_tag="CDBI1_01805"
                     /note="putative catalytic cysteine [active]"
                     /db_xref="CDD:143440"
     misc_feature    418670..419875
                     /locus_tag="CDBI1_01805"
                     /note="C-terminal alcohol dehydrogenase domain of the
                     acetaldehyde dehydrogenase-alcohol dehydrogenase
                     bifunctional two-domain protein (AAD); Region: AAD_C;
                     cd08178"
                     /db_xref="CDD:173937"
     misc_feature    order(418763..418765,418937..418945,418952..418954,
                     418961..418963,419093..419098,419102..419104,
                     419159..419164,419216..419218,419240..419242,
                     419261..419263,419273..419275,419471..419473,
                     419483..419485,419513..419515)
                     /locus_tag="CDBI1_01805"
                     /note="putative active site [active]"
                     /db_xref="CDD:173937"
     misc_feature    order(419261..419263,419273..419275,419471..419473,
                     419513..419515)
                     /locus_tag="CDBI1_01805"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:173937"
     gene            complement(420256..420597)
                     /locus_tag="CDBI1_01810"
                     /db_xref="GeneID:12216268"
     CDS             complement(420256..420597)
                     /locus_tag="CDBI1_01810"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197528.1"
                     /db_xref="GI:384359676"
                     /db_xref="GeneID:12216268"
                     /translation="MLLILDNLNLNLDFDYRIIREENDDVDIFIDINYRSLDIDTDGS
                     NLFNSRIQFPFVRALILRINKNNQCMTIHLLRDIDLFSAFANFEVDYTDSIINIKNQN
                     EKVILNKSIKK"
     gene            complement(420624..421295)
                     /locus_tag="CDBI1_01815"
                     /db_xref="GeneID:12216269"
     CDS             complement(420624..421295)
                     /locus_tag="CDBI1_01815"
                     /note="'COG1136 ABC-type antimicrobial peptide transport
                     system, ATPase component'"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="YP_006197529.1"
                     /db_xref="GI:384359677"
                     /db_xref="GeneID:12216269"
                     /translation="MPILEILNLGKIYGKKETAVHALKDANLKINKGEFVAIIGPSGS
                     GKSTFLHLVGGLERPSSGTIKVDGKDICCLSDKKLAKYRRQKVGFVFQQYNLIPVLNV
                     KENIELPLKLDNKKVDEEYIEDIINLLGLSERKNHLPNQLSGGQQQRVAIARALSAKP
                     SIILADEPTGNLDSKTTEEVMDLLKSSIKKYNQTLIIITHNENIARKADRIISIIDGE
                     LKLTL"
     misc_feature    complement(420639..421289)
                     /locus_tag="CDBI1_01815"
                     /note="ABC-type antimicrobial peptide transport system,
                     ATPase component [Defense mechanisms]; Region: SalX;
                     COG1136"
                     /db_xref="CDD:224059"
     misc_feature    complement(420639..421286)
                     /locus_tag="CDBI1_01815"
                     /note="ATP-binding cassette domain of the transporters
                     involved in export of lipoprotein and macrolide, and cell
                     division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255"
                     /db_xref="CDD:213222"
     misc_feature    complement(421155..421178)
                     /locus_tag="CDBI1_01815"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213222"
     misc_feature    complement(order(420696..420698,420795..420800,
                     421020..421022,421152..421160,421164..421169))
                     /locus_tag="CDBI1_01815"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213222"
     misc_feature    complement(421020..421031)
                     /locus_tag="CDBI1_01815"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213222"
     misc_feature    complement(420843..420872)
                     /locus_tag="CDBI1_01815"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213222"
     misc_feature    complement(420795..420812)
                     /locus_tag="CDBI1_01815"
                     /note="Walker B; other site"
                     /db_xref="CDD:213222"
     misc_feature    complement(420777..420788)
                     /locus_tag="CDBI1_01815"
                     /note="D-loop; other site"
                     /db_xref="CDD:213222"
     misc_feature    complement(420690..420710)
                     /locus_tag="CDBI1_01815"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213222"
     gene            complement(421307..423892)
                     /locus_tag="CDBI1_01820"
                     /db_xref="GeneID:12216270"
     CDS             complement(421307..423892)
                     /locus_tag="CDBI1_01820"
                     /note="'COG0577 ABC-type antimicrobial peptide transport
                     system, permease component'"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="YP_006197530.1"
                     /db_xref="GI:384359678"
                     /db_xref="GeneID:12216270"
                     /translation="MKDNLKIALRYIISYKARSLAIALSIILATSLIVGIGTLSRSAQ
                     QAEVDKLKRETGSDHVYFKDINKNQLEYIKSRKDIKNLGITSHYGYTDPNERLAINLE
                     YANKNYLTNQSKLIKGHLPKASNEVVVEKWILNSLGLKPEINQNITFKLYQKEKPETF
                     KVVGILEDRPIEKNKGTCEIFLNLNESKLDKFSYAYIEFNNGIDINTSIDNIVKNTML
                     DENSVGKNKMLIESTRENGTLDNSSKYTAITMSLFSGIVIYSIYVISIYQRIQEYGIL
                     RAIGSTNFKIFKFMFYELFILALIAIPIGICTGIGGAQIFNRTAGNIQFEGNVTVTPF
                     VIPDKIILLSIGSIILTILIISFFTYLKIRRISPIDSIRKTFGTDKNINKVNSLISKL
                     TLNISVTKSISAKNIFRNKKGFIIIILSMSLGGIMIIKENYKYSFSDIQNKNGQEETY
                     MNADFILTNFFLKLNQSNKADSFKDIKGLNDNQIDKIKNINGIDKVKTASILDTRIEV
                     DKLNGLDYYNIINSTPYYKDFPLFIKNKNTGKYTMKQKLRGYNDEMINSLEKYLVSGS
                     INLERMKKENLAILYVPQVSKTNKYKLSYTPGTETPAVDIKVGDTIKVKYPKGEIDQD
                     LYIKLKDNYEYLEYEFKVGAIVSYPFADNYLYSGDQGIDVITSNDYLKKLTGVDKYNV
                     VYVDINKNANVKKINTLLGEIGSESPGTTTANMLMEKENFDKMTARALTYAYGIVAVM
                     FIISVFNIINNISYNLTSRTSEFGMLRAIGISERGFKNMILYEGILYGILSSVITIVV
                     GLIIQFRMYYTYNFVSYGLGFSIDYKIYILVVLANIIVGILATYIPLRKINKISIVEA
                     INITE"
     misc_feature    complement(423251..423871)
                     /locus_tag="CDBI1_01820"
                     /note="MacB-like periplasmic core domain; Region:
                     MacB_PCD; pfam12704"
                     /db_xref="CDD:221725"
     misc_feature    complement(<422885..423091)
                     /locus_tag="CDBI1_01820"
                     /note="FtsX-like permease family; Region: FtsX; pfam02687"
                     /db_xref="CDD:217187"
     misc_feature    complement(421334..421627)
                     /locus_tag="CDBI1_01820"
                     /note="FtsX-like permease family; Region: FtsX; pfam02687"
                     /db_xref="CDD:217187"
     gene            424100..425035
                     /locus_tag="CDBI1_01825"
                     /db_xref="GeneID:12216271"
     CDS             424100..425035
                     /locus_tag="CDBI1_01825"
                     /note="COG3290 Signal transduction histidine kinase
                     regulating citrate/malate metabolism"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="YP_006197531.1"
                     /db_xref="GI:384359679"
                     /db_xref="GeneID:12216271"
                     /translation="MENNFIFPIVILTLFIFSNLIMNKYRFYKELDILKRGILTFFVS
                     CFVWILFMEGIEYIQLSLGYNFLLEGVLNIILFLILIILSFYIGFKFIRLLDNNNKQE
                     YKLQKLDSKINHKDNIIVKLRSQKHDYLKHLQVVYSLLNTGLAEDAKEYITNISNSFK
                     SKNSRYGKVSYLDAIASLKYEECLEKNISFDVYIQDFMDNLEIEPNDMSSVLLNIIDN
                     AIESLSAIQKEKKYIRLHAYEDEFQYIIAIKNNGPKIHNVESIFLDGFSTKEGQDRGF
                     GLYLVKNILDKYDYSILVNSDDFLTEFVILIPKYY"
     misc_feature    424727..425020
                     /locus_tag="CDBI1_01825"
                     /note="Histidine kinase-like ATPases; This family includes
                     several ATP-binding proteins for example: histidine
                     kinase, DNA gyrase B, topoisomerases, heat shock protein
                     HSP90, phytochrome-like ATPases and DNA mismatch repair
                     proteins; Region: HATPase_c; cd00075"
                     /db_xref="CDD:238030"
     misc_feature    order(424739..424741,424751..424753,424760..424762,
                     424841..424843,424847..424849,424853..424855,
                     424922..424933,424979..424981,424985..424987,
                     425000..425002,425006..425008)
                     /locus_tag="CDBI1_01825"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    424751..424753
                     /locus_tag="CDBI1_01825"
                     /note="Mg2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    order(424853..424855,424922..424924,424928..424930)
                     /locus_tag="CDBI1_01825"
                     /note="G-X-G motif; other site"
                     /db_xref="CDD:238030"
     gene            425054..425791
                     /locus_tag="CDBI1_01830"
                     /db_xref="GeneID:12216272"
     CDS             425054..425791
                     /locus_tag="CDBI1_01830"
                     /note="COG3279 Response regulator of the LytR/AlgR family"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator"
                     /protein_id="YP_006197532.1"
                     /db_xref="GI:384359680"
                     /db_xref="GeneID:12216272"
                     /translation="MIKVLICDDDKIVRDDIANIVKESGYVDYVKKVKDGIEAIEFIK
                     SEKIDLLIIDIDMPYKNGIDSAKEILSIDKDIHIVFVTGFADYSLESFKVHPIDFIVK
                     PFKKEKILDSINIAIDHINSHKIAKNNFIEDTLFVYKIRKQIHMINFDDIVMFEKNSR
                     AINLYTRDEDTIKFYENFDDLKKRLPPNFFMTHRQYIVNLRLIHKVIPINKSSLEIKF
                     INFQESATLNKSLEKDFLYRFYRVKRF"
     misc_feature    425054..425722
                     /locus_tag="CDBI1_01830"
                     /note="Response regulator of the LytR/AlgR family
                     [Transcription / Signal transduction mechanisms]; Region:
                     LytT; COG3279"
                     /db_xref="CDD:225818"
     misc_feature    425066..425404
                     /locus_tag="CDBI1_01830"
                     /note="Signal receiver domain; originally thought to be
                     unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
                     recently identified in eukaroytes ETR1 Arabidopsis
                     thaliana; this domain receives the signal from the sensor
                     partner in a two-component systems; Region: REC; cd00156"
                     /db_xref="CDD:238088"
     misc_feature    order(425075..425080,425213..425215,425237..425239,
                     425297..425299,425348..425350,425357..425362)
                     /locus_tag="CDBI1_01830"
                     /note="active site"
                     /db_xref="CDD:238088"
     misc_feature    425213..425215
                     /locus_tag="CDBI1_01830"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238088"
     misc_feature    order(425222..425227,425231..425239)
                     /locus_tag="CDBI1_01830"
                     /note="intermolecular recognition site; other site"
                     /db_xref="CDD:238088"
     misc_feature    425357..425365
                     /locus_tag="CDBI1_01830"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238088"
     misc_feature    425477..>425713
                     /locus_tag="CDBI1_01830"
                     /note="LytTr DNA-binding domain; Region: LytTR; pfam04397"
                     /db_xref="CDD:218063"
     gene            complement(425951..431008)
                     /locus_tag="CDBI1_01835"
                     /db_xref="GeneID:12216273"
     CDS             complement(425951..431008)
                     /locus_tag="CDBI1_01835"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197533.1"
                     /db_xref="GI:384359681"
                     /db_xref="GeneID:12216273"
                     /translation="MLERTRVEKNPKIIENFKNNFTKSSSKQYYDLAKSLWDCIENSS
                     YYYREPEDKFLNMIKKYYNCHYYEIKNMDELLSGPLKNALELIFTSEQVEELCQLIKR
                     KMDYTYSGGYYRKGYRSNKLVDYFRGIIRFISNYVDLIYYDFSVIDYLTLPNKVLYYD
                     SIMSDKIALEIDKGNQKVTSALEEVIFGENQTALLTRQMIIGIMKSHSDKCYEMLSKL
                     LLAAKQQEGLRQQIVESLDEGTISASIYMLKTILDNNLERFSSVIRALDTWTGLGFSD
                     QKPGIIRKCLELSYKSLTDEKFRIESINSNDNLEIYFALWATATYNIYDSYSLIENLL
                     SCQEKYKKLVALYFLSHTESTYFKHSIASKNIKGDDLEILAWVITNFYVEGSVGYYYS
                     WQNRETNFDLSNTPIDKDFDARKEQFESLKHTLEILNSKTKSFSGSVFPWTWIEISSH
                     EILKCMMTLTAYDMNAQFIDVLMENCHLMSSDLRASLIVNFVNEPKTDRQREFLLECL
                     SDKSVSNRETVLSLLRKLELTDVELDKITNLLSLKTSSIRQTVIKILLEQDDSNLENI
                     ASSLIKSSNSQKCLGGLEIVNLLKDNSDRQELYNKLILLIEDIDKSKKNTSQVQILID
                     NLLGKAKNDYCKENGFGIYNPENKVQIPEQFDFKDDSNSSSKLNKIISNISLSTSEDS
                     VSVATKKEAKKILDTDINKIIKVYEKFDELITENADYEYEVERWSGNVDKVLLGYSTY
                     NLTPIKYKVSNDTLDNYPLAELWRETSKKLDLDYKLILDILFYSISTCGYNETEKSWF
                     SSIYSNVLDSKKQNKIYTKLEKFKFNGLTRKLLRVLLNEFDHKEIFNYCLEIYYKLRN
                     LLTIEQCKKQRVEFTKNYYRQNEYCPALNAPILNYWLDKAHSFIYDDISFTKFFYTTF
                     SNYQLLEYKFPFYTSINVFARAHELGLMTEEQVNREMISGYNASNIIRTLTNPRWAGD
                     TLEKYPWLKDNLKTVTNRIIEIESRRGDMPTEVSHLANNIQYFEGIDYFVNILVALGK
                     ETFQRGYSYGSNYSKKDVLSSLLKNCYPTKEDDSKKLKSLLKNTDITELRLIESAMYA
                     PQWVNIIEKYLNWKGLKSTIWYFHAHINEGFSAQKESEVALFSPISPRSFIDGAFDVD
                     WFLDSYKTIGEERFNILYKSAKYITSGGNSHRRAQLYADATLGKLDKDMLMKEIETNR
                     NQDKLRSFSLLPMKKGDLKEATFRYEFIQKFAKESKQFGAQRRESESKACTIALENLA
                     RSAGFGDVNRMMWALETEKLNEVAHLFKPKDIDGTSIWIDVDESGKASTKVQKGNKSL
                     KSIPKAIAKHPYVLELKSVQKDLKSQYSRAKQSLEQAMKNEIVFTVKEIANIYKNPVI
                     CPLIKNLVWVCDDNIGYVYNDKSKFFICNIEGETYKLTAKNKLKLAHPVHLFESGKWS
                     EFQHDLFSKQLVQPFKQVFREYYRINSDEISEKTISRRYAGHQIQPKKTVALLRNQLW
                     TVDYEEGLQKVFYKENIVAKMFALADWFSPADIEPPTIETVEFFDRKTYKSLELASIP
                     PILFSEVMRDIDLVVSVAHAGGVDPETSHSTVEMRIAIAKELLLLLKINNINFEGSHV
                     LITGNLGEYSVHMGSGIVHKKGMGALNILPVHSQSRGKIFLPFADEDPKTAEIMSKIL
                     LLAEDNKIKDPSILSNL"
     misc_feature    complement(426524..427057)
                     /locus_tag="CDBI1_01835"
                     /note="Domain of unknown function (DUF4132); Region:
                     DUF4132; pfam13569"
                     /db_xref="CDD:222230"
     gene            complement(431033..431452)
                     /locus_tag="CDBI1_01840"
                     /db_xref="GeneID:12216274"
     CDS             complement(431033..431452)
                     /locus_tag="CDBI1_01840"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197534.1"
                     /db_xref="GI:384359682"
                     /db_xref="GeneID:12216274"
                     /translation="MQIYFRVKAVGKRKPMLELTPFDVSDNINCLKEAISEIVSKNVL
                     EYNEKIPEKSIINFLTNEEIESQADIGKVGFGSIYNENKQSVEKAIEVALQAFEDGIY
                     KVLINEDVIEKLDSPINLKSGDIFTFIRLTLLAGRMF"
     gene            complement(431685..431936)
                     /locus_tag="CDBI1_01845"
                     /db_xref="GeneID:12216275"
     CDS             complement(431685..431936)
                     /locus_tag="CDBI1_01845"
                     /note="'COG0567 2-oxoglutarate dehydrogenase complex,
                     dehydrogenase (E1) component, and related enzymes'"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197535.1"
                     /db_xref="GI:384359683"
                     /db_xref="GeneID:12216275"
                     /translation="MNRYTKIINMMGSYYTKDFEKEKKNVIKVREVKEDTVRKFFLQG
                     DCEVLVVFEDTGKEILIDDFSPEEDIKKYLGTKFINKKR"
     gene            432025..432756
                     /locus_tag="CDBI1_01850"
                     /db_xref="GeneID:12216276"
     CDS             432025..432756
                     /locus_tag="CDBI1_01850"
                     /note="COG0727 Predicted Fe-S-cluster oxidoreductase"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197536.1"
                     /db_xref="GI:384359684"
                     /db_xref="GeneID:12216276"
                     /translation="MTSIKNKDILNCIDYSIKNKLFDKLNDVYKSLPVGNCSGCGNCC
                     MESVGINLIEFLNIFCYLEDRVDLKKSCISKILDYYFEEYTRKNPCPFKDTNNRCLIY
                     EVRPLNCRMFGHWKKEDYNKNLDNVIEKNNNYRELMKKQYGFEINDEVVNYRIDYCDR
                     FIPNKDYLSKSKRLSFFDELMILDSNIYSSGNIDIDFRDRGIVEYFIESLLYRNLAYN
                     VKIRISKEYKIRKRTIDRIKRIVLV"
     misc_feature    432133..432393
                     /locus_tag="CDBI1_01850"
                     /note="Flagellin N-methylase; Region: FliB; pfam03692"
                     /db_xref="CDD:217675"
     gene            432815..433726
                     /locus_tag="CDBI1_01855"
                     /db_xref="GeneID:12216277"
     CDS             432815..433726
                     /locus_tag="CDBI1_01855"
                     /note="'COG0491 Zn-dependent hydrolases, including
                     glyoxylases'"
                     /codon_start=1
                     /transl_table=11
                     /product="metallo-beta-lactamase"
                     /protein_id="YP_006197537.1"
                     /db_xref="GI:384359685"
                     /db_xref="GeneID:12216277"
                     /translation="MNLTKVKGNTFFIKGGTNTGIYVFEDNTALMIDPGLCGSRPRRV
                     NKVLDENNIQVRYIINTHGHDDHYGACNQFKEYYKDVCIMSSEYDKLYIENPELFSKY
                     IVGGKSNVFMDNILKNKMLDDIKIDKSIEVGKIELNNEMFDIIEFQGHTPGSIAVLTK
                     DNVIFVGDLLIGDEILSKYDFLFLYDIQEQINSLEKLKNIDFEYLVLGHGKQVISKED
                     SYKLIEKHLNALKKYLYQIRELLVEPKSLEILLKNIINNNNLSNNYKEYHFFKSSLVS
                     VISYLVDLEEIGYILENGELLYYTKTK"
     misc_feature    432848..433492
                     /locus_tag="CDBI1_01855"
                     /note="Zn-dependent hydrolases, including glyoxylases
                     [General function prediction only]; Region: GloB; COG0491"
                     /db_xref="CDD:223565"
     gene            433777..434589
                     /locus_tag="CDBI1_01860"
                     /db_xref="GeneID:12216278"
     CDS             433777..434589
                     /locus_tag="CDBI1_01860"
                     /note="COG2357 Uncharacterized protein conserved in
                     bacteria"
                     /codon_start=1
                     /transl_table=11
                     /product="guanosine 3',5'-bis-pyrophosphate (ppGpp)
                     synthesis/degradation protein"
                     /protein_id="YP_006197538.1"
                     /db_xref="GI:384359686"
                     /db_xref="GeneID:12216278"
                     /translation="MEYEKWNEILAPYEHAVEELKIKFKNIRKEYLAKGEYSPIEFVT
                     GRTKKISSIISKLKRINAKDIETEIDDIAGIRIMCQFVEDIYAIVDLIKVRNDMTIIG
                     EKDYITNYKDSGYRSYHVIIKYPINSIAGSKEIICEIQIRTLAMNFWATIEHSLKYKY
                     DHYIPETLAERLRRASDAAFLLDQEMSEIREDIMKAQAMYQMKSIAIRDTLNRIQELY
                     DLGDTHKAMQYQRKLDRTETDKNITEILELKQEIDILLEQYKDTKVDDKVVQ"
     misc_feature    433879..434232
                     /locus_tag="CDBI1_01860"
                     /note="Nucleotidyltransferase (NT) domain of RelA- and
                     SpoT-like ppGpp synthetases and hydrolases; Region:
                     NT_Rel-Spo_like; cd05399"
                     /db_xref="CDD:143389"
     misc_feature    order(433912..433914,433918..433920,433987..433992,
                     434002..434004,434086..434088,434092..434094,
                     434107..434109,434113..434115,434119..434121,
                     434131..434133,434188..434190,434194..434196,
                     434200..434202,434224..434229)
                     /locus_tag="CDBI1_01860"
                     /note="synthetase active site [active]"
                     /db_xref="CDD:143389"
     misc_feature    order(433912..433914,434086..434088,434092..434094,
                     434107..434109,434113..434115,434119..434121,
                     434131..434133,434188..434190,434194..434196,
                     434224..434226)
                     /locus_tag="CDBI1_01860"
                     /note="NTP binding site [chemical binding]; other site"
                     /db_xref="CDD:143389"
     misc_feature    order(433987..433989,434188..434190)
                     /locus_tag="CDBI1_01860"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143389"
     gene            434699..435391
                     /locus_tag="CDBI1_01865"
                     /db_xref="GeneID:12216279"
     CDS             434699..435391
                     /locus_tag="CDBI1_01865"
                     /note="COG1768 Predicted phosphohydrolase"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoesterase"
                     /protein_id="YP_006197539.1"
                     /db_xref="GI:384359687"
                     /db_xref="GeneID:12216279"
                     /translation="MSLYAIGDLHFSTSVNKPMNIFGSNWDGHEKKIIDNWKEVVKEE
                     DMVLVLGDTSWGINLSEAKKDLDIISKLPGQKILIKGNHDYWWTTVTSLNKLYEDMRF
                     IQTNFYEYKDYAICGGRGWICPNDVKFDETDEKVYKREEHRLRLSLESARKSGHSKII
                     VITHYPPTNDKLEESLFTKLFEEYNVEKVIYGHLHGKESFKMGLKGIRNGVEYTLASC
                     DYTEFNLIKVHD"
     misc_feature    434699..435382
                     /locus_tag="CDBI1_01865"
                     /note="Predicted phosphohydrolase [General function
                     prediction only]; Region: COG1768"
                     /db_xref="CDD:224682"
     misc_feature    434705..435283
                     /locus_tag="CDBI1_01865"
                     /note="Calcineurin-like phosphoesterase; Region:
                     Metallophos; pfam00149"
                     /db_xref="CDD:215750"
     gene            435478..436419
                     /locus_tag="CDBI1_01870"
                     /db_xref="GeneID:12216280"
     CDS             435478..436419
                     /locus_tag="CDBI1_01870"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197540.1"
                     /db_xref="GI:384359688"
                     /db_xref="GeneID:12216280"
                     /translation="MRWILVFIFLYLIPLVVIFRNYKNFKRSCIYSSIYVVLATTIMI
                     SNIYMSGLNKIKESMYYHNYISDETYDEKYVSNFKEKESTDLKQDNKKNEEISNNKNL
                     NNKQDRNIQNKESNEEGSNDIKEKNNSDSNVSVNNKSEKQEDNTKENNKYTSKEKNSE
                     DIKKIDMESIGIFKKEIYNIERAALVPMRECIPYTKDIAKNITKLSSIKKDVTNARNK
                     CKEVVKEYENMQIPELSKEKYTETLSNARDDVKKAYELREKSMESALKLINTKSPKYI
                     GKITEYLDLSDKQIESFKNRLNDLKEEINNSETNNIN"
     gene            436456..437613
                     /locus_tag="CDBI1_01875"
                     /db_xref="GeneID:12216281"
     CDS             436456..437613
                     /locus_tag="CDBI1_01875"
                     /note="COG0500 SAM-dependent methyltransferases"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197541.1"
                     /db_xref="GI:384359689"
                     /db_xref="GeneID:12216281"
                     /translation="MNKQSIGKLNMFFMGITQRNLDNRHFFIELEVIFKSGRKEFKGI
                     AIEEDNKYKFNFKGKSDLYTFNELLKNISKEAENYDGLVFKYVERGTIVVIEGDNKKV
                     NVKYLDNKEEVPKIDEFTASQIKNRDYYVKVGQANALLKEIGVLTKDGKIKNDKIRKY
                     NQIDHFVELIDSILKEIKDKDCITILDCACGKSYLSFVLNFYIKEVLKKNCYFIGIDY
                     SDVVIEASKNMAKNLGYKNMSFIKEDLTNYTPNRDVDLVISLHACDTATDMAIGLGIR
                     AKSEAIVVVPCCHKELLGQYRYEAMEPILKHGVFKARFADLITDGLRTLLLEGNGYDT
                     SVVEYISPLDTPKNLMIRAIKTKTNNDKALKEYKELKSQFGVEPTLEKLIY"
     misc_feature    437002..437346
                     /locus_tag="CDBI1_01875"
                     /note="Methyltransferase domain; Region: Methyltransf_31;
                     pfam13847"
                     /db_xref="CDD:222415"
     misc_feature    437005..>437247
                     /locus_tag="CDBI1_01875"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    order(437017..437037,437104..437109,437182..437190,
                     437233..437235)
                     /locus_tag="CDBI1_01875"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            437765..438325
                     /locus_tag="CDBI1_01880"
                     /db_xref="GeneID:12216282"
     CDS             437765..438325
                     /locus_tag="CDBI1_01880"
                     /note="COG5663 Uncharacterized conserved protein"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197542.1"
                     /db_xref="GI:384359690"
                     /db_xref="GeneID:12216282"
                     /translation="MNKLNICIDIDGTITSPYHFLPYLNDIFNKNITEAECITHNWEE
                     LYGSGIRDVYAEFNNKYIHSYDEAKIVEGATEVISTLSKGHNLSFVTARHECLTDVTK
                     NWLSRQGFSDIDVYLLGSDYKVEKARELSCDIFIEDNPLNSVQLADDGVKVILLDTNY
                     NKDVKHQNIVRVSNWIDIEKIIKQGI"
     misc_feature    437765..438316
                     /locus_tag="CDBI1_01880"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG5663"
                     /db_xref="CDD:227950"
     gene            438353..438844
                     /locus_tag="CDBI1_01885"
                     /db_xref="GeneID:12216283"
     CDS             438353..438844
                     /locus_tag="CDBI1_01885"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197543.1"
                     /db_xref="GI:384359691"
                     /db_xref="GeneID:12216283"
                     /translation="MIDLKIENRKGKIHVKSSEIKDILELRPDFEYVQDISNTINQEN
                     ILVFDCQLTGNSFDMDDLDIEEILEELGEEIDESYFSVLFEDVRAYLKDATDEIEADL
                     QDNYLFDNLRCYFDIYNINQEFTDFKFVFLVSFKDIKISSLANLAKIVSKRQLIGASK
                     FYS"
     gene            439073..439624
                     /locus_tag="CDBI1_01890"
                     /db_xref="GeneID:12216284"
     CDS             439073..439624
                     /locus_tag="CDBI1_01890"
                     /note="COG1396 Predicted transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="YP_006197544.1"
                     /db_xref="GI:384359692"
                     /db_xref="GeneID:12216284"
                     /translation="MQSLNEIIAENLKKIRKEKHLSLDKIAQLSGVSKSMLSQIEKCE
                     VNPTISTLKKITNGLKISFTSLMERQESDIELIQKSDIDHFIEDNGKYISYPIFPFDS
                     KRRFEIFMIEIEEGGNLDSNAELPGTQEFITVFSGEVTIKINGEDYIVSSGNSIRFKA
                     DVSHIYRNSGKGIAKMSMVVYYI"
     misc_feature    439073..439600
                     /locus_tag="CDBI1_01890"
                     /note="DNA-binding transcriptional repressor PuuR;
                     Provisional; Region: PRK09943"
                     /db_xref="CDD:182158"
     misc_feature    439097..439270
                     /locus_tag="CDBI1_01890"
                     /note="Helix-turn-helix XRE-family like proteins.
                     Prokaryotic DNA binding proteins belonging to the
                     xenobiotic response element family of transcriptional
                     regulators; Region: HTH_XRE; cd00093"
                     /db_xref="CDD:238045"
     misc_feature    order(439109..439111,439121..439123,439196..439198)
                     /locus_tag="CDBI1_01890"
                     /note="non-specific DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:238045"
     misc_feature    order(439118..439120,439193..439195)
                     /locus_tag="CDBI1_01890"
                     /note="salt bridge; other site"
                     /db_xref="CDD:238045"
     misc_feature    order(439139..439144,439175..439177,439184..439186,
                     439196..439201)
                     /locus_tag="CDBI1_01890"
                     /note="sequence-specific DNA binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238045"
     misc_feature    <439457..439615
                     /locus_tag="CDBI1_01890"
                     /note="Cupin domain; Region: Cupin_2; pfam07883"
                     /db_xref="CDD:219618"
     gene            439710..440642
                     /locus_tag="CDBI1_01895"
                     /db_xref="GeneID:12216285"
     CDS             439710..440642
                     /locus_tag="CDBI1_01895"
                     /note="COG1650 Uncharacterized protein conserved in
                     archaea"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197545.1"
                     /db_xref="GI:384359693"
                     /db_xref="GeneID:12216285"
                     /translation="MNNKKAVFFFCSDLKKDPVASNVIKCCEEIMDLNQTDIVIDDNF
                     VLEFKDKNNNLFHFVKTKDVISHNYKYYLPILNRHFRDYDFAGVVNWHEGENAPEHIL
                     TAHTIGDVPTGEFGNSNPRYFKNLINAIEDIKNENLLDEFTTLTEATHWSGTTYGEES
                     KLITEYSVPMLDIEIGSSSDSFNNSIAIQVLAKSLIRVFDCDEPLKTLLCVGGVHFEK
                     SFSDIIKNKEYNISIGHVLPNQWIVSGMYDDESGFEKLEKCINSIEGGIDCIVFHDKL
                     KGTYKEQCRKLGEKLNVPVFKHKILKNPKDLPIW"
     misc_feature    439920..440603
                     /locus_tag="CDBI1_01895"
                     /note="D-aminoacyl-tRNA deacylase; Region: tRNA_deacylase;
                     cl00716"
                     /db_xref="CDD:242044"
     gene            440697..441560
                     /locus_tag="CDBI1_01900"
                     /db_xref="GeneID:12216286"
     CDS             440697..441560
                     /locus_tag="CDBI1_01900"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197546.1"
                     /db_xref="GI:384359694"
                     /db_xref="GeneID:12216286"
                     /translation="MILSYFALLIRVVLLAFERVVVRLLGDEEGDIYKNIASSFLFFF
                     IGGVCLLPFSIMDRVSDWSFLIPCYISSLVYSIGSVAYVTSLATGEVSLVTPINSLNS
                     LFLLLLSVIFLGEGLSLAKVAGIIIMIGGVFILKKVSSFLKNVSVIFNNLPCRLMFLY
                     IFLQSVGRVLDKAFFVQVSPILYSTILYFFVGLNLFIFLAFKKKQKIICEIFSNKKGL
                     SILSGAINGYSYLALLIALNNLELSIAEPFSQVSMIITLILAHFIFKENIKEKIPGSI
                     LILIGGWLLLL"
     gene            441807..443669
                     /locus_tag="CDBI1_01905"
                     /db_xref="GeneID:12216287"
     CDS             441807..443669
                     /locus_tag="CDBI1_01905"
                     /note="COG1264 Phosphotransferase system IIB components"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system beta-glucoside-specific transporter
                     subunit IIABC"
                     /protein_id="YP_006197547.1"
                     /db_xref="GI:384359695"
                     /db_xref="GeneID:12216287"
                     /translation="MNYKKTAIDIIEQVGGSKNILALEHCSTRLRFKLIDRSKVNQDA
                     LKKVQGVMSIVNGAQFQVVIGNSVVDVYDEILKVCPLDTNDSTVKTEEKINLGTRFIE
                     FIINIFQPLIFAIAGAGILKSLLMLLAMFNILKSDSTIYTLLVAISDATFYFLPLMVA
                     VTTANVLKCNRLVAIAAVGYLLLPATTTALSEGVELFGFTIPNIAYNAQVFPAILCVS
                     FLATMEKIFNKYSPKPIRTFFVPMMSLAITVPITLTILGPLGYNVGTIFTTIILFLYN
                     KMGFLVVGLLAAFLPFMVATGMHKALIPYSINTIGKLGYEALYMTSSLAHNISESGAC
                     FAVALRTKDETLKQTALSAGISALMGITEPALYGITLQHKRAMLGVVFSSAISGTFLG
                     LFAVKGFVIVGPGLASMSMFIDPNNGNNLIFASIGFVIAILGSFIITLIIWKEDTNTV
                     ESSIGDVVEEELEEEKEVNILVTPVEGKVIDLSKVNDELFASKTLGDGVAIIPTNGNL
                     YAPCDSEVVMLFETKHAIGLRTKNGAEILIHIGINTVSMNGDGFKTFVKTGDNVKEGD
                     LLIQFDLDKISHANLDSTVMIVNNNGADYAYKVLNQSYGNVKKGSILFDVKGGI"
     misc_feature    441813..443657
                     /locus_tag="CDBI1_01905"
                     /note="PTS system, beta-glucoside-specific IIABC
                     component; Region: PTS-II-ABC-beta; TIGR01995"
                     /db_xref="CDD:233677"
     misc_feature    441816..442040
                     /locus_tag="CDBI1_01905"
                     /note="PTS_IIB, PTS system, glucose/sucrose specific IIB
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This family...; Region:
                     PTS_IIB_glc; cd00212"
                     /db_xref="CDD:238130"
     misc_feature    441879..441899
                     /locus_tag="CDBI1_01905"
                     /note="active site turn [active]"
                     /db_xref="CDD:238130"
     misc_feature    441882..441884
                     /locus_tag="CDBI1_01905"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238130"
     misc_feature    442080..443153
                     /locus_tag="CDBI1_01905"
                     /note="Phosphotransferase system IIC components,
                     glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
                     transport and metabolism]; Region: PtsG; COG1263"
                     /db_xref="CDD:224183"
     misc_feature    443217..443654
                     /locus_tag="CDBI1_01905"
                     /note="Phosphotransferase system IIA components
                     [Carbohydrate transport and metabolism]; Region: NagE;
                     COG2190"
                     /db_xref="CDD:225101"
     misc_feature    order(443265..443276,443286..443291,443355..443360,
                     443364..443369,443385..443393,443409..443417,
                     443421..443423,443433..443435,443439..443444,
                     443478..443480,443574..443576,443583..443585)
                     /locus_tag="CDBI1_01905"
                     /note="HPr interaction site; other site"
                     /db_xref="CDD:238128"
     misc_feature    order(443265..443267,443271..443276,443280..443282,
                     443286..443291,443358..443360,443364..443366,
                     443376..443378,443415..443417,443421..443423,
                     443433..443435,443439..443444,443448..443450,
                     443574..443576)
                     /locus_tag="CDBI1_01905"
                     /note="glycerol kinase (GK) interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:238128"
     misc_feature    order(443370..443372,443376..443378,443421..443423,
                     443427..443429)
                     /locus_tag="CDBI1_01905"
                     /note="active site"
                     /db_xref="CDD:238128"
     misc_feature    443421..443423
                     /locus_tag="CDBI1_01905"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238128"
     gene            443672..445138
                     /locus_tag="CDBI1_01910"
                     /db_xref="GeneID:12216288"
     CDS             443672..445138
                     /locus_tag="CDBI1_01910"
                     /note="COG2723
                     Beta-glucosidase/6-phospho-beta-glucosidase/beta-
                     galactosidase"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="YP_006197548.1"
                     /db_xref="GI:384359696"
                     /db_xref="GeneID:12216288"
                     /translation="MRKFPEGFLWGGATAANQFEGGWNLGGKGWSVSDVAKAHFDADV
                     KDYKSNNEITTKDIEEGLAHPEDEVNYPKRHGSDFYHHYKEDIALMAEMGFKTYRMSI
                     AWSRIFPNGDDKEPNEEGLQFYDDVFDELISYGIEPLVTMSHYEPPLNIVLNYDGWYS
                     RQVINMFVRYVETICERYKNKVKYWLTFNEVDSMIRHPYTTGGLVRDRFKDKNFEEVI
                     FQAMHHQFVASALATKICHEIIPNSKVGCMLTKLTYYPYTCRPEDVLATQQKMRSIYA
                     YSDTQVFGEYPVYLLSYFKNNNIQIAKEEHDDEIMKKYPVDFISFSYYMSSCEAADTT
                     GLDITPGNTLLAVKNPYLEMSEWGWQIDSIGLRISLIELYDRYRKPLFIVENGLGAKD
                     ILTEDKKVHDQYRINYLKEHFKCMLDAIIEDGVELWGYTSWGCIDLVSESTKQMSKRY
                     GYIYVDADDYGKGTYNRYKKDSFYWYKKVIENNSIDFK"
     misc_feature    443672..445129
                     /locus_tag="CDBI1_01910"
                     /note="Glycosyl hydrolase family 1; Region: Glyco_hydro_1;
                     cl01046"
                     /db_xref="CDD:242268"
     misc_feature    443684..445099
                     /locus_tag="CDBI1_01910"
                     /note="beta-galactosidase; Region: BGL; TIGR03356"
                     /db_xref="CDD:234180"
     gene            445162..445998
                     /locus_tag="CDBI1_01915"
                     /db_xref="GeneID:12216289"
     CDS             445162..445998
                     /locus_tag="CDBI1_01915"
                     /note="COG3711 Transcriptional antiterminator"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucoside bgl operon transcription
                     antiterminator"
                     /protein_id="YP_006197549.1"
                     /db_xref="GI:384359697"
                     /db_xref="GeneID:12216289"
                     /translation="MNYIIKKVLNSSVVLVHDAKYNEFILLGKGIGYGKKTGEYICGS
                     NDNQMFVPVENTKSKKFLELMDDIPVDILKITQEIIVEAEKLLNSSFNKNLYLILADH
                     FNFAIERMRKGIKITNRVFWEIKNYYPNEFKVGMVAIYMVEERLGIQLPEEEAANIAF
                     HFANAMASDGNSYDTIKYAKVIGEIINIFVFSLNRTLDKKSMHYMRFITHIKFFVERF
                     FSDSMLSSGDDLLFNQMKRSNPKEMLIALKVRDFLEKKYGKKLTNEEIAFLVVHIARV
                     KQ"
     misc_feature    445162..445995
                     /locus_tag="CDBI1_01915"
                     /note="transcriptional antiterminator BglG; Provisional;
                     Region: PRK09772"
                     /db_xref="CDD:170086"
     misc_feature    445390..445656
                     /locus_tag="CDBI1_01915"
                     /note="PRD domain; Region: PRD; pfam00874"
                     /db_xref="CDD:201484"
     misc_feature    445711..445986
                     /locus_tag="CDBI1_01915"
                     /note="PRD domain; Region: PRD; pfam00874"
                     /db_xref="CDD:201484"
     gene            446564..448147
                     /locus_tag="CDBI1_01920"
                     /db_xref="GeneID:12216290"
     CDS             446564..448147
                     /locus_tag="CDBI1_01920"
                     /note="COG0367 Asparagine synthase
                     (glutamine-hydrolyzing)"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthetase"
                     /protein_id="YP_006197550.1"
                     /db_xref="GI:384359698"
                     /db_xref="GeneID:12216290"
                     /translation="MINLEEKYLTRKDTYMIKILEYNGHIRNWKVLCEELGIDSSLCR
                     DERERAILVEAYKTWGYDMANHMHGMFAFALWDTVEKKLFCLRDQFGVKPFYYYETEN
                     GKLLYGSSIRKIMEQPGFVKELNEDMLQIYMSFTYVAGENTFFRGVKKLMPGHYLVYQ
                     NKTVCIGRYWKPEFHPDHSKSIEEWTDEIHTTLQKIMPEVKSENETAELFLSGGVDSS
                     YILAMSDIEKTGSCGYEEERFDESKLAQQTANILGCKNSRYIITPEEYFASVPYVMYH
                     MEQPTGDASAIVFAIGCKAAAENTNICYSGEGADEFFGGYNIYHKAECYGENLKTFYI
                     GNTNIMNEGEKRKILKKYNPDVLPIEVVKGIYEETEELDTLTNMSNVDIQIWLEGDIY
                     FNIDKMSTAVGLEVRMPLTDTRIFDIASRIPSEYKVKGKENKIAFRTAASKTLPEEIA
                     FRNKLGFIVPIRIWMADDQYNKDIRDKFNSEIADKFFNIDEINEIFNDYISGNSDNWR
                     KIWMIYTFLVWYEIYFVKC"
     misc_feature    <446627..447076
                     /locus_tag="CDBI1_01920"
                     /note="Glutamine amidotransferases class-II (GATase)
                     asparagine synthase_B type.  Asparagine synthetase B
                     catalyses the ATP-dependent conversion of aspartate to
                     asparagine. This enzyme is a homodimer, with each monomer
                     composed of a  glutaminase domain and a...; Region: AsnB;
                     cd00712"
                     /db_xref="CDD:238364"
     misc_feature    order(446630..446638,446705..446707)
                     /locus_tag="CDBI1_01920"
                     /note="active site"
                     /db_xref="CDD:238364"
     misc_feature    447188..447943
                     /locus_tag="CDBI1_01920"
                     /note="The C-terminal domain of Asparagine Synthase B.
                     This domain is always found associated n-terminal
                     amidotransferase domain. Family members that contain this
                     domain catalyse the conversion of aspartate to asparagine.
                     Asparagine synthetase B  catalyzes the...; Region:
                     Asn_Synthase_B_C; cd01991"
                     /db_xref="CDD:238949"
     misc_feature    order(447191..447199,447257..447265,447437..447439,
                     447476..447484)
                     /locus_tag="CDBI1_01920"
                     /note="Ligand Binding Site [chemical binding]; other site"
                     /db_xref="CDD:238949"
     misc_feature    order(447191..447199,447257..447265,447437..447439,
                     447476..447484)
                     /locus_tag="CDBI1_01920"
                     /note="Molecular Tunnel; other site"
                     /db_xref="CDD:238949"
     gene            complement(448212..448808)
                     /locus_tag="CDBI1_01925"
                     /db_xref="GeneID:12216291"
     CDS             complement(448212..448808)
                     /locus_tag="CDBI1_01925"
                     /note="COG0535 Predicted Fe-S oxidoreductases"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="YP_006197551.1"
                     /db_xref="GI:384359699"
                     /db_xref="GeneID:12216291"
                     /translation="MNILYTIENSIYVNITNTCPCSCVFCIRNEKDEVANSGSLWLEH
                     EPSVDEVKEAFNKYNLDDYDEIVFCGYGEPLMRINELIEVAKFIKEKSSIKIRINTNG
                     LSDLIHNKKTAILLKDVIDTVSISLNAPNKEAYNRVTQPKFGEKSFDYMLGFARDCKK
                     YIKEVAFSVVDEISPEEIEESKQLAKKLDIPLRVRHKN"
     misc_feature    complement(448221..448805)
                     /locus_tag="CDBI1_01925"
                     /note="radical SAM protein, TatD family-associated;
                     Region: tatD_link_rSAM; TIGR04038"
                     /db_xref="CDD:188553"
     misc_feature    complement(<448353..448772)
                     /locus_tag="CDBI1_01925"
                     /note="Radical SAM superfamily. Enzymes of this family
                     generate radicals by combining a 4Fe-4S cluster and
                     S-adenosylmethionine (SAM) in close proximity. They are
                     characterized by a conserved CxxxCxxC motif, which
                     coordinates the conserved iron-sulfur cluster; Region:
                     Radical_SAM; cd01335"
                     /db_xref="CDD:100105"
     misc_feature    complement(order(448431..448433,448506..448514,
                     448590..448595,448602..448604,448728..448736,
                     448740..448742,448746..448748,448752..448754))
                     /locus_tag="CDBI1_01925"
                     /note="FeS/SAM binding site; other site"
                     /db_xref="CDD:100105"
     gene            complement(448835..449362)
                     /locus_tag="CDBI1_01930"
                     /db_xref="GeneID:12216292"
     CDS             complement(448835..449362)
                     /locus_tag="CDBI1_01930"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197552.1"
                     /db_xref="GI:384359700"
                     /db_xref="GeneID:12216292"
                     /translation="MEKMNKVTSKKTTYIVTSALFASIICLTIAYILHIPVGGNNGYV
                     HIGDAFIYLAATILPTNYAIAASAIGAGLADLSTGAAIWVIPTIIIKPILVLFFTSKS
                     DKIINKRNIVASVVAGIVGLVLYMFAEGIIIGSFTSAFVMSLLGLLQPIGSFIVFIIL
                     GMALDKLDFKKRYFN"
     misc_feature    complement(448850..449302)
                     /locus_tag="CDBI1_01930"
                     /note="TIGR04002 family protein; Region: TIGR04002"
                     /db_xref="CDD:188517"
     gene            complement(449724..450722)
                     /locus_tag="CDBI1_01935"
                     /db_xref="GeneID:12216293"
     CDS             complement(449724..450722)
                     /locus_tag="CDBI1_01935"
                     /note="COG1052 Lactate dehydrogenase and related
                     dehydrogenases"
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="YP_006197553.1"
                     /db_xref="GI:384359701"
                     /db_xref="GeneID:12216293"
                     /translation="MKILVFGARDYEEPVIKKWSEEHKDVQVDIYPENMTEENVVKAK
                     GYDGISIQQTNYIDNPYIYETLKDAGVKVIASRTAGVDMIHFDLVNENGLIVTNVPSY
                     SPNAIAELAVTQAMNLLRKTPLVKKKVCEGDYRWIAELLGTEVRSITVGVIGTGKIGA
                     TSAKLFKGLGANVIAFDQYPNSDLNDILTYKDSLEDLLKEADLITLHTPLLEGTKHMI
                     NKDTLAIMKDGAYIVNTGRGGLINTGDLIEALESGKIRAAALDTFETEGLFLNKKMNP
                     GELTDPEINKLLSMEQVIFTHHLGFFTSTAIENIVYSSLSSAVEVIKTGTATNRVN"
     misc_feature    complement(449727..450722)
                     /locus_tag="CDBI1_01935"
                     /note="D-lactate dehydrogenase; Validated; Region:
                     PRK08605"
                     /db_xref="CDD:181499"
     misc_feature    complement(449730..450722)
                     /locus_tag="CDBI1_01935"
                     /note="D-Lactate dehydrogenase and D-2-Hydroxyisocaproic
                     acid dehydrogenase (D-HicDH), NAD-binding and catalytic
                     domains; Region: LDH; cd12186"
                     /db_xref="CDD:240662"
     misc_feature    complement(order(449802..449840,449904..449918,
                     450216..450221,450228..450230,450282..450305,
                     450315..450332,450336..450338,450345..450350,
                     450363..450365,450372..450377,450381..450386,
                     450393..450398,450405..450410,450414..450416,
                     450696..450698))
                     /locus_tag="CDBI1_01935"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240662"
     misc_feature    complement(order(449820..449822,449829..449831,
                     450012..450014,450417..450419,450483..450491))
                     /locus_tag="CDBI1_01935"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:240662"
     misc_feature    complement(order(449820..449825,449829..449831,
                     449937..449942,450012..450020,450072..450074,
                     450081..450083,450093..450104,450189..450197,
                     450246..450257,450261..450263,450402..450404,
                     450417..450419))
                     /locus_tag="CDBI1_01935"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:240662"
     misc_feature    complement(order(449829..449831,449925..449927,
                     450012..450014))
                     /locus_tag="CDBI1_01935"
                     /note="catalytic site [active]"
                     /db_xref="CDD:240662"
     gene            451399..452598
                     /locus_tag="CDBI1_01940"
                     /db_xref="GeneID:12216294"
     CDS             451399..452598
                     /locus_tag="CDBI1_01940"
                     /note="COG1804 Predicted acyl-CoA transferases/carnitine
                     dehydratase"
                     /codon_start=1
                     /transl_table=11
                     /product="isocaprenoyl-CoA:2-hydroxyisocaproate
                     CoA-transferase"
                     /protein_id="YP_006197554.1"
                     /db_xref="GI:384359702"
                     /db_xref="GeneID:12216294"
                     /translation="MLLEGVKVVELSSFIAAPCCAKMLGDWGAEVIKIEPIEGDGIRV
                     MGGTFKSPASDDENPMFELENGNKKGVSINVKSKEGVEILHKLLSEADIFVTNVRVQA
                     LEKMGIAYDQIKDKYPGLIFSQILGYGEKGPLKDKPGFDYTAYFARGGVSQSVMEKGT
                     SPANTAAGFGDHYAGLALAAGSLAALHKKAQTGKGERVTVSLFHTAIYGMGTMITTAQ
                     YGNEMPLSRENPNSPLMTTYKCKDGRWIQLALIQYNKWLGKFCKVINREYILEDDRYN
                     NIDSMVNHVEDLVKIVGEAMLEKTLDEWSALLEEADLPFEKIQSCEDLLDDEQAWAND
                     FLFKKTYDSGNTGVLVNTPVMFRNEGIKEYTPAPKVGQHTVEVLKSLGYDEEKINNFK
                     DSKVVRY"
     misc_feature    451405..452589
                     /locus_tag="CDBI1_01940"
                     /note="Predicted acyl-CoA transferases/carnitine
                     dehydratase [Energy production and conversion]; Region:
                     CaiB; COG1804"
                     /db_xref="CDD:224717"
     misc_feature    451609..452136
                     /locus_tag="CDBI1_01940"
                     /note="CoA-transferase family III; Region: CoA_transf_3;
                     pfam02515"
                     /db_xref="CDD:217078"
     gene            452637..453437
                     /locus_tag="CDBI1_01945"
                     /db_xref="GeneID:12216295"
     CDS             452637..453437
                     /locus_tag="CDBI1_01945"
                     /note="COG1924 Activator of 2-hydroxyglutaryl-CoA
                     dehydratase (HSP70-class ATPase domain)"
                     /codon_start=1
                     /transl_table=11
                     /product="activator of 2-hydroxyisocaproyl-CoA
                     dehydratase"
                     /protein_id="YP_006197555.1"
                     /db_xref="GI:384359703"
                     /db_xref="GeneID:12216295"
                     /translation="MYTMGLDIGSTASKGVILKNGEDIVASETISSGTGTTGPSRVLE
                     KLYGKTGLAREDIKKVVVTGYGRMNYSDADKQISELSCHARGVNFIIPETRTIIDIGG
                     QDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSELGSISMNSQNEVSI
                     SSTCTVFAESEVISHLSENAKIEDIVAGIHTSVAKRVSSLVKRIGVQRNVVMVGGVAR
                     NSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDEAKESQKEVKNI"
     misc_feature    452640..453386
                     /locus_tag="CDBI1_01945"
                     /note="BadF/BadG/BcrA/BcrD ATPase family; Region:
                     BcrAD_BadFG; cl17271"
                     /db_xref="CDD:247825"
     gene            453452..454678
                     /locus_tag="CDBI1_01950"
                     /db_xref="GeneID:12216296"
     CDS             453452..454678
                     /locus_tag="CDBI1_01950"
                     /note="'COG1775 Benzoyl-CoA
                     reductase/2-hydroxyglutaryl-CoA dehydratase subunit,
                     BcrC/BadD/HgdB'"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-sensitive 2-hydroxyisocaproyl-CoA
                     dehydratase subunit"
                     /protein_id="YP_006197556.1"
                     /db_xref="GI:384359704"
                     /db_xref="GeneID:12216296"
                     /translation="MSEKKEARVVINDLLAEQYANAFKAKEEGRPVGWSTSVFPQELA
                     EVFDLNVLYPENQAAGVAAKKGSLELCEIAESKGYSIDLCAYARTNFGLLENGGCEAL
                     DMPAPDFLLCCNNICNQVIKWYENISRELDIPLIMIDTTFNNEDEVTQSRIDYIKAQF
                     EEAIKQLEIISGKKFDPKKFEEVMKISAENGRLWKYSMSLPADSSPSPMNGFDLFTYM
                     AVIVCARGKKETTEAFKLLIEELEDNMKTGKSSFRGEEKYRIMMEGIPCWPYIGYKMK
                     TLAKFGVNMTGSVYPHAWALQYEVNDLDGMAVAYSTMFNNVNLDRMTKYRVDSLVEGK
                     CDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQADPRAFTNAQFETRIQG
                     LVEVMEERKKLNRGEI"
     misc_feature    453461..454642
                     /locus_tag="CDBI1_01950"
                     /note="benzoyl-CoA reductase, bcr type, subunit B; Region:
                     benz_CoA_red_B; TIGR02260"
                     /db_xref="CDD:131313"
     misc_feature    453557..454642
                     /locus_tag="CDBI1_01950"
                     /note="2-hydroxyglutaryl-CoA dehydratase, D-component;
                     Region: HGD-D; pfam06050"
                     /db_xref="CDD:218873"
     gene            454678..455805
                     /locus_tag="CDBI1_01955"
                     /db_xref="GeneID:12216297"
     CDS             454678..455805
                     /locus_tag="CDBI1_01955"
                     /note="'COG1775 Benzoyl-CoA
                     reductase/2-hydroxyglutaryl-CoA dehydratase subunit,
                     BcrC/BadD/HgdB'"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-sensitive 2-hydroxyisocaproyl-CoA
                     dehydratase subunit"
                     /protein_id="YP_006197557.1"
                     /db_xref="GI:384359705"
                     /db_xref="GeneID:12216297"
                     /translation="MEAILSKMKEVVENPNAAVKKYKNETGKKAIGCFPVYCPEEIIH
                     AAGMLPVGIWGGQTELDLAKQYFPAFACSIMQSCLEYGLKGAYDELSGVIIPGMCDTL
                     ICLGQNWKSAVPHIKYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKI
                     HESIEVYNEHRKTMRDFVEVAYKHSNTIKPSIRSLVIKSGFFMRKEEHTELVKDLIAK
                     LNAMPEEVCSGKKVLLTGILADSKDILDILEDNNISVVADDLAQETRQFRTDVPAGDD
                     ALERLARQWSNIEGCSLAYDPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPL
                     VRKDIEDSGIPTLYVEIDQQTQNNEQARTRIQTFAEMMSLA"
     misc_feature    454729..455787
                     /locus_tag="CDBI1_01955"
                     /note="benzoyl-CoA reductase, subunit C; Region:
                     benz_CoA_red_C; TIGR02263"
                     /db_xref="CDD:131316"
     misc_feature    454777..455793
                     /locus_tag="CDBI1_01955"
                     /note="2-hydroxyglutaryl-CoA dehydratase, D-component;
                     Region: HGD-D; pfam06050"
                     /db_xref="CDD:218873"
     gene            455853..456986
                     /locus_tag="CDBI1_01960"
                     /db_xref="GeneID:12216298"
     CDS             455853..456986
                     /locus_tag="CDBI1_01960"
                     /note="COG1960 Acyl-CoA dehydrogenases"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="YP_006197558.1"
                     /db_xref="GI:384359706"
                     /db_xref="GeneID:12216298"
                     /translation="MLYNKEQELLRKAVRDFVSKELDTLPAEMDKTGVMPKELIKKLA
                     DAKFISSNIPEEYGGGGAGYVSYAIVMEEIARRCASTATFVTAGSSLASLPILYNGTE
                     EQKQKYLKGIATGELIGAFGLTEPGAGSDAGGQQTTAELVGDHYILNGRKTFITNGPF
                     CDVAIVIAVTDRSKGLRGTSAFIVESKWDGFSTGAHEDKMGIRGTETSDLIFENVKVP
                     KENLLGKEGQGFKIAMGTLEVGRIGVAALALGIAQGALDEAVKYTKQRVQFGKPIAKF
                     QNTQFTIADMETKVCAARGLVYDAAQKRDAGMRVAQESAMAKYYASEIANEVAYKALQ
                     LHGGYGFIKDYEIERMYRDARIVSIYEGTSEVQKMVISSNVLK"
     misc_feature    455853..456983
                     /locus_tag="CDBI1_01960"
                     /note="Acyl-CoA dehydrogenases [Lipid metabolism]; Region:
                     CaiA; COG1960"
                     /db_xref="CDD:224871"
     misc_feature    455868..456983
                     /locus_tag="CDBI1_01960"
                     /note="Acyl-CoA dehydrogenase; Region: ACAD; cl09933"
                     /db_xref="CDD:245208"
     misc_feature    order(456123..456125,456213..456215,456219..456221,
                     456312..456314,456318..456320,456927..456935,
                     456939..456941,456945..456947)
                     /locus_tag="CDBI1_01960"
                     /note="active site"
                     /db_xref="CDD:173838"
     gene            457019..457804
                     /locus_tag="CDBI1_01965"
                     /db_xref="GeneID:12216299"
     CDS             457019..457804
                     /locus_tag="CDBI1_01965"
                     /note="'COG2086 Electron transfer flavoprotein, beta
                     subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta"
                     /protein_id="YP_006197559.1"
                     /db_xref="GI:384359707"
                     /db_xref="GeneID:12216299"
                     /translation="MKILVCVKQVPDTNEVRINKETGTLIRDGVPSILNPDDANALEE
                     ALKIKDEHDDVTITVITMGPPQADFMLRECLAMGADDAILLSDRAFGGADTWATSNTI
                     AAGISKVGDYDIIFAGRQAIDGDTAQVGPQIAEKLDIPQVTYVQDFKIEGKDIIVQRQ
                     LEDGYELIKVSTPVLLTAVKELNTPRYMSVDKIVKAYKHDVKVWTIDDLDVNKEEVGL
                     KASPTKVFRSFTPEPRGKGEILEGKADEIASKIIIGLKQKHII"
     misc_feature    457022..457633
                     /locus_tag="CDBI1_01965"
                     /note="The electron transfer flavoprotein (ETF) serves as
                     a specific electron acceptor for various mitochondrial
                     dehydrogenases. ETF transfers electrons to the main
                     respiratory chain via ETF-ubiquinone oxidoreductase. ETF
                     is an heterodimer that consists of an...; Region:
                     ETF_beta; cd01714"
                     /db_xref="CDD:238847"
     misc_feature    order(457034..457039,457121..457123,457130..457132,
                     457202..457204,457367..457372,457376..457381,
                     457394..457405)
                     /locus_tag="CDBI1_01965"
                     /note="Ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:238847"
     misc_feature    457094..457573
                     /locus_tag="CDBI1_01965"
                     /note="Electron transfer flavoprotein domain; Region: ETF;
                     pfam01012"
                     /db_xref="CDD:216243"
     gene            457823..458860
                     /locus_tag="CDBI1_01970"
                     /db_xref="GeneID:12216300"
     CDS             457823..458860
                     /locus_tag="CDBI1_01970"
                     /note="'COG2025 Electron transfer flavoprotein, alpha
                     subunit'"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein, alpha
                     subunit/FixB family protein"
                     /protein_id="YP_006197560.1"
                     /db_xref="GI:384359708"
                     /db_xref="GeneID:12216300"
                     /translation="MNDIKDLSSYKNVWIFAEQREGKIAPVVIELLGEGRKLAKEVDA
                     ELCAILLGKDVDGLAKELITFGADKVYVADDALLEKYTTDAYTKVIKDAIDEIKPEIM
                     LFGATHIGRDLAPRIASRVGTGLTADCTKLEIDPEDKKIKQTRPAFGGNIMATIICPN
                     HRPQMSTVRPGVMDKAEKDETRTGEVIALDYKITQDDIRTTVLETVKTKKDLVSLTDA
                     NVIVSGGLGLGGPEGFEMLKKLADKLGGVVGSSRAAVDAGWIDHSHQVGQTGTTVKPN
                     LYIACGISGAIQHLAGMQSSDFIIAINKNPAAPILEIADYGVVGDLHEIVPMLIEKLD
                     SVDDLLEAIKA"
     misc_feature    457853..458821
                     /locus_tag="CDBI1_01970"
                     /note="Electron transfer flavoprotein, alpha subunit
                     [Energy production and conversion]; Region: FixB; COG2025"
                     /db_xref="CDD:224936"
     misc_feature    457856..458368
                     /locus_tag="CDBI1_01970"
                     /note="The electron transfer flavoprotein (ETF) serves as
                     a specific electron acceptor for various mitochondrial
                     dehydrogenases. ETF transfers electrons to the main
                     respiratory chain via ETF-ubiquinone oxidoreductase. ETF
                     is an heterodimer that consists of an...; Region:
                     ETF_alpha; cd01715"
                     /db_xref="CDD:238848"
     misc_feature    458459..458713
                     /locus_tag="CDBI1_01970"
                     /note="Electron transfer flavoprotein FAD-binding domain;
                     Region: ETF_alpha; pfam00766"
                     /db_xref="CDD:189709"
     gene            459343..460974
                     /locus_tag="CDBI1_01975"
                     /db_xref="GeneID:12216301"
     CDS             459343..460974
                     /locus_tag="CDBI1_01975"
                     /note="'COG3829 Transcriptional regulator containing PAS,
                     AAA-type ATPase, and DNA-binding domains'"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="YP_006197561.1"
                     /db_xref="GI:384359709"
                     /db_xref="GeneID:12216301"
                     /translation="MDNNLIGLIEHVENPAILCKESGEIIYCNHLIDSIFSFLDIKKP
                     RNINELDSNFDKTEILTDSKKKIAFRELRMTAHIYNMKDNNNENNIVYLFEKSLISDK
                     VIEDIIEHIDEVVVVFNKDGVIEKMNTVSDEILPFKRTEVLGRNITDLVRQGLVEEPI
                     ILNMLKVKKKIYRNIVYPDGKLIAYTAVPRWDSKGKLTGGVLTGRDISRVIKLESQIK
                     YSDISEDTEYISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYKYSSRR
                     DKPFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKGLFEEANGGTIFLDEIGELP
                     MQMQKKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSV
                     IPVKIPPLRERKEDIVPLVNYFLKLYNEKYNREVEVSPKVIELLEEYSWPGNIRELKN
                     IIERFVVLSAKNVIGEDEFNMLINLDMIDNETDDLSPIVVNGIMNLNDAYKIVDQIMI
                     SKAINKYGSITKAAEVIGIYPSTIHRKIKSGHIHV"
     misc_feature    459697..459966
                     /locus_tag="CDBI1_01975"
                     /note="PAS domain; Region: PAS_9; pfam13426"
                     /db_xref="CDD:222120"
     misc_feature    <460009..460971
                     /locus_tag="CDBI1_01975"
                     /note="Response regulator containing CheY-like receiver,
                     AAA-type ATPase, and DNA-binding domains [Signal
                     transduction mechanisms]; Region: AtoC; COG2204"
                     /db_xref="CDD:225114"
     misc_feature    460045..460539
                     /locus_tag="CDBI1_01975"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    460108..460131
                     /locus_tag="CDBI1_01975"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(460111..460134,460324..460326,460450..460452)
                     /locus_tag="CDBI1_01975"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    460312..460329
                     /locus_tag="CDBI1_01975"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    460507..460509
                     /locus_tag="CDBI1_01975"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    460849..460953
                     /locus_tag="CDBI1_01975"
                     /note="Bacterial regulatory protein, Fis family; Region:
                     HTH_8; cl17420"
                     /db_xref="CDD:247974"
     gene            complement(461109..462035)
                     /locus_tag="CDBI1_01980"
                     /db_xref="GeneID:12216302"
     CDS             complement(461109..462035)
                     /locus_tag="CDBI1_01980"
                     /note="COG0191 Fructose/tagatose bisphosphate aldolase"
                     /codon_start=1
                     /transl_table=11
                     /product="putative fructose-bisphosphate aldolase"
                     /protein_id="YP_006197562.1"
                     /db_xref="GI:384359710"
                     /db_xref="GeneID:12216302"
                     /translation="MALITTKEMFKKAYEGGFAIGAFNISDLEQLQGVLKAAKAKNSY
                     VMIQASMSAVKYAGPHTLVEMVKAASDEIGVDVALHLDHGPNMDAIKTCIDAGFSSVM
                     IDGSHFDFEENVRITKEAVEYAHSKGVVVEAELGVLAGTEDDVTSDVHKYTQPAEAVE
                     FVERTGVDSLAIAIGTSHGAFKFKGEAKLRFDILEEIQSKLPGFPIVLHGASAVDQNA
                     VATCNEFGGNIAGAKGVPVDMLRKASSMAVCKINMDTDLRLAMTAAIRKFLAENPKEF
                     DPRKYIGAGRDAIQAVVESKIDDVLGSANSIN"
     misc_feature    complement(461121..462020)
                     /locus_tag="CDBI1_01980"
                     /note="Tagatose-1,6-bisphosphate (TBP) aldolase and
                     related Type B Class II aldolases. TBP aldolase is a
                     tetrameric class II aldolase that catalyzes the reversible
                     condensation of dihydroxyacetone phosphate with
                     glyceraldehyde 3-phsophate to produce tagatose 1; Region:
                     TBP_aldolase_IIB; cd00947"
                     /db_xref="CDD:238477"
     misc_feature    complement(461121..462014)
                     /locus_tag="CDBI1_01980"
                     /note="fructose-bisphosphate aldolase; Provisional;
                     Region: PRK09197"
                     /db_xref="CDD:236406"
     misc_feature    complement(order(461229..461231,461238..461240,
                     461250..461252,461259..461264,461268..461273,
                     461610..461612,461829..461834,461841..461843,
                     461853..461855,461865..461873,461880..461882,
                     461940..461942,461949..461957))
                     /locus_tag="CDBI1_01980"
                     /note="intersubunit interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238477"
     misc_feature    complement(order(461271..461276,461280..461282,
                     461400..461402,461406..461411,461493..461495,
                     461499..461507,461787..461792))
                     /locus_tag="CDBI1_01980"
                     /note="active site"
                     /db_xref="CDD:238477"
     misc_feature    complement(order(461409..461411,461502..461504,
                     461787..461789))
                     /locus_tag="CDBI1_01980"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:238477"
     misc_feature    complement(order(461400..461402,461406..461408,
                     461493..461495,461499..461501,461505..461507))
                     /locus_tag="CDBI1_01980"
                     /note="Na+ binding site [ion binding]; other site"
                     /db_xref="CDD:238477"
     gene            462365..462694
                     /locus_tag="CDBI1_01985"
                     /db_xref="GeneID:12216303"
     CDS             462365..462694
                     /locus_tag="CDBI1_01985"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197563.1"
                     /db_xref="GI:384359711"
                     /db_xref="GeneID:12216303"
                     /translation="MPQIKIRGINENDICKISKKMINDLVEAVKCPRDYFEIECIKSV
                     AIRDGKIADVYPFVEVAWFDRGQEVQDIVARIITDSIRNNLDVESMDLAFTVFEKEKY
                     YENGEHF"
     misc_feature    462368..462688
                     /locus_tag="CDBI1_01985"
                     /note="Domain of unknown function (DUF1904); Region:
                     DUF1904; pfam08921"
                     /db_xref="CDD:220071"
     gene            462694..462906
                     /locus_tag="CDBI1_01990"
                     /db_xref="GeneID:12216304"
     CDS             462694..462906
                     /locus_tag="CDBI1_01990"
                     /note="COG1187 16S rRNA uridine-516 pseudouridylate
                     synthase and related pseudouridylate synthases"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="YP_006197564.1"
                     /db_xref="GI:384359712"
                     /db_xref="GeneID:12216304"
                     /translation="MAKKQRIDKILSNLGYGSRSEIKKYCKQGSVVVNGSEVSNPGTQ
                     VDTENDEILFNGEEVIYREYIYLIKK"
     misc_feature    462706..462876
                     /locus_tag="CDBI1_01990"
                     /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
                     domain surface is populated by conserved, charged residues
                     that define a likely RNA-binding site;  Found in stress
                     proteins, ribosomal proteins and tRNA synthetases; This
                     may imply a hitherto unrecognized...; Region: S4; cl09940"
                     /db_xref="CDD:245212"
     misc_feature    order(462709..462711,462742..462747,462751..462756,
                     462760..462765,462772..462777,462781..462783,
                     462802..462825,462829..462831)
                     /locus_tag="CDBI1_01990"
                     /note="RNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238095"
     gene            463545..464663
                     /locus_tag="CDBI1_01995"
                     /db_xref="GeneID:12216305"
     CDS             463545..464663
                     /locus_tag="CDBI1_01995"
                     /note="COG0675 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase-like protein b"
                     /protein_id="YP_006197565.1"
                     /db_xref="GI:384359713"
                     /db_xref="GeneID:12216305"
                     /translation="MIAVEKAYKFRMYPNKKQQELINKTFGCCRFVYNKYLAKRIEVY
                     KNDKETFTYKQCSSDLTNLKKELKWLKEPDKFSLQNALKDLDNAYKKFFKEKAGFPKF
                     KSKKINRFSYKTNFTNGNIMYCGQHIKLPKLGMVKIRDKQVPKGRILNATISKEPSGR
                     YYVSLCCTDVDIEVFENTNNQIGLDLGIKEFCISSCGEFIENPKYLKKSLNKLAKLQR
                     ELSRKTIGSLNRNKARLKVARLQEHIANQRNDFLQKLSTKLIKENDIICIEDLQVKNM
                     IRNCKLSRLISDVSWSEFIRQLEYKANWHGRQIVKVGKFFASSQICNKCGYKNEEVKD
                     LSIREWICPSCNETHDRDINASINILKEGLRLITTQNK"
     misc_feature    463560..464654
                     /locus_tag="CDBI1_01995"
                     /note="Transposase and inactivated derivatives [DNA
                     replication, recombination, and repair]; Region: COG0675"
                     /db_xref="CDD:223747"
     misc_feature    463560..463691
                     /locus_tag="CDBI1_01995"
                     /note="Helix-turn-helix domain; Region: HTH_OrfB_IS605;
                     pfam12323"
                     /db_xref="CDD:256981"
     misc_feature    463749..464372
                     /locus_tag="CDBI1_01995"
                     /note="Probable transposase; Region: OrfB_IS605;
                     pfam01385"
                     /db_xref="CDD:250577"
     misc_feature    464415..464627
                     /locus_tag="CDBI1_01995"
                     /note="Putative transposase DNA-binding domain; Region:
                     OrfB_Zn_ribbon; pfam07282"
                     /db_xref="CDD:115907"
     gene            464782..465300
                     /locus_tag="CDBI1_02000"
                     /db_xref="GeneID:12216306"
     CDS             464782..465300
                     /locus_tag="CDBI1_02000"
                     /note="COG1187 16S rRNA uridine-516 pseudouridylate
                     synthase and related pseudouridylate synthases"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="YP_006197566.1"
                     /db_xref="GI:384359714"
                     /db_xref="GeneID:12216306"
                     /translation="MNKPDGYISATTDKYDPTVLDLIDLSYLAFEPFPVGRLDKDTEG
                     LLVLTNDGKLSHRVLSPKKHVPKTYYAKIDGVVTEEDVEAFLEGVVLDDGYKTMPSQL
                     NILKSDDESEIELTIHEGKFHQVKRMFESVGKKVVYLKRLSMGNLKLDESLELGEYRE
                     LTDEEVKLIEER"
     misc_feature    464782..465279
                     /locus_tag="CDBI1_02000"
                     /note="Pseudouridine synthase, Escherichia coli RsuA like;
                     Region: PseudoU_synth_RsuA; cd02553"
                     /db_xref="CDD:211327"
     misc_feature    464884..465270
                     /locus_tag="CDBI1_02000"
                     /note="pseudouridine synthase; Region: TIGR00093"
                     /db_xref="CDD:232821"
     misc_feature    order(464887..464898,465157..465159)
                     /locus_tag="CDBI1_02000"
                     /note="active site"
                     /db_xref="CDD:211327"
     misc_feature    order(464986..464988,465148..465159)
                     /locus_tag="CDBI1_02000"
                     /note="uracil binding [chemical binding]; other site"
                     /db_xref="CDD:211327"
     gene            465333..466688
                     /locus_tag="CDBI1_02005"
                     /db_xref="GeneID:12216307"
     CDS             465333..466688
                     /locus_tag="CDBI1_02005"
                     /note="COG2265 SAM-dependent methyltransferases related to
                     tRNA (uracil-5-)-methyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="putative tRNA (uracil-5-)-methyltransferase"
                     /protein_id="YP_006197567.1"
                     /db_xref="GI:384359715"
                     /db_xref="GeneID:12216307"
                     /translation="MKKKDVIEFEVDKMEFGGTSLSQVGDRVIHMKGGISGQKVRAGV
                     KKVRSKKAEVKMIELLENSPLETEETCKHFRECGGCTLLSVPYEKQLEIKEKQVMDLF
                     LKQDLFGFQFLGIEGSPENKYYRNKMEYTFGDEVKNGPLTLGLHKKGKHIDIQTVEEC
                     MLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRHLVVRKGIHTNEIMVNIVTSSQ
                     EDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCDELRVLYGRDYIQEEILGLK
                     FKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFDLYSGTGSIGQVMAGAAKKVYG
                     IEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLKDKPDLIIVDPPRPGIHKDAI
                     RDICGFGAKEIVYISCNPKSLVVDLVDFKGYGYEIKMVKCMDMFPNTPHCETVVKLIR
                     E"
     misc_feature    465339..466664
                     /locus_tag="CDBI1_02005"
                     /note="SAM-dependent methyltransferases related to tRNA
                     (uracil-5-)-methyltransferase [Translation, ribosomal
                     structure and biogenesis]; Region: TrmA; COG2265"
                     /db_xref="CDD:225174"
     gene            complement(466770..466985)
                     /locus_tag="CDBI1_02010"
                     /db_xref="GeneID:12216308"
     CDS             complement(466770..466985)
                     /locus_tag="CDBI1_02010"
                     /note="COG0582 Integrase"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="YP_006197568.1"
                     /db_xref="GI:384359716"
                     /db_xref="GeneID:12216308"
                     /translation="MIFDILIITTLEEYTLYFKNPDTMLLENGTNIKDIQHILGHAKT
                     STTMDTYLHVTNNMRNQMVNIFEIIVE"
     misc_feature    complement(466809..>466919)
                     /locus_tag="CDBI1_02010"
                     /note="DNA breaking-rejoining enzymes, C-terminal
                     catalytic domain. The DNA breaking-rejoining enzyme
                     superfamily includes type IB topoisomerases and tyrosine
                     recombinases that share the same fold in their catalytic
                     domain containing six conserved active site...; Region:
                     DNA_BRE_C; cl00213"
                     /db_xref="CDD:241691"
     gene            467012..467167
                     /locus_tag="CDBI1_02015"
                     /db_xref="GeneID:12216309"
     CDS             467012..467167
                     /locus_tag="CDBI1_02015"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197569.1"
                     /db_xref="GI:384359717"
                     /db_xref="GeneID:12216309"
                     /translation="MFSKNEILKKLIEEYDVKTTTDIQDMLKDLFTNTIHQIFPLSNF
                     NGLNIIY"
     gene            467211..468245
                     /locus_tag="CDBI1_02020"
                     /db_xref="GeneID:12216310"
     CDS             467211..468245
                     /locus_tag="CDBI1_02020"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197570.1"
                     /db_xref="GI:384359718"
                     /db_xref="GeneID:12216310"
                     /translation="MFKKKLIAVAMSITMISVGSFSYAHSGRTDSSGGHRDNKNKSGL
                     GSYHYHCGGYPAHLHNNGGCPYTGGGSSSGTTTSVNNEEKQKRSVGEKGYNQGYEDGY
                     KGNYSSSNYSGDYSDTYESKYSEGYEKGKAKLEEEEKVAKETGYNLGLTGAKSNNTYE
                     KEVLKNAYDTGYSTGYNEYKTKKIEEYKAKGIEDSNKDKEKMTFEENIDSEFIDAYNN
                     AYDEIQEQLKNDYTTQGFESAIKGERFDTSTIGNVKYANWFKEGYDNGKVKLPKAKES
                     VYNQGYNEEDFSIPYEMKSIETKLKGVYDEGLEKREEEKSRNATYGVGAGTAAVVAGV
                     VYKNKKRKKI"
     gene            468332..468535
                     /locus_tag="CDBI1_02025"
                     /db_xref="GeneID:12216311"
     CDS             468332..468535
                     /locus_tag="CDBI1_02025"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197571.1"
                     /db_xref="GI:384359719"
                     /db_xref="GeneID:12216311"
                     /translation="MGFNFRKSINLGGGLKLNLGKKSVGISAGVKGARVSVNSKGRKS
                     ATLSIPGTGISYTKTSTKKRKPK"
     misc_feature    468338..468505
                     /locus_tag="CDBI1_02025"
                     /note="Protein of unknown function (DUF4236); Region:
                     DUF4236; pfam14020"
                     /db_xref="CDD:206190"
     gene            468706..469866
                     /locus_tag="CDBI1_02030"
                     /db_xref="GeneID:12216312"
     CDS             468706..469866
                     /locus_tag="CDBI1_02030"
                     /note="COG2247 Putative cell wall-binding domain"
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="YP_006197572.1"
                     /db_xref="GI:384359720"
                     /db_xref="GeneID:12216312"
                     /translation="MKLSKTLLAIGMSVSLLIASCPTSNALSSINSIKGTNKYETAGL
                     IADKQNYDIAILINSENGLSDGLSASGLSGAKNAPILLTKKDTIPSETLKRLEKVKEV
                     YLIGGKNSIGASVQKILSDKKISINRISGTDRIDTSHKVAKEIGRVSTVKKVILTNAF
                     KGEPDAMSVASIAVRDKSPIVLTDGNTTSFATDGLETYAIGGKVSMSDKLINETKATR
                     IGGVDRYDTNKQIINKFYNGSKEFYIASGTDLVYSLVGSTIAQKTPIVLVGNGSNKSI
                     LKNASKITAIGNIDDVIIKQCLNITNNVGDSNTGIVKDTNSNNTNKPSNEPSSNNPGL
                     TDKSTVYVTPNGKSYHLTKNCSTLKRSKTINKVTLKQAKSQGKIDPCNVCVK"
     misc_feature    468802..469056
                     /locus_tag="CDBI1_02030"
                     /note="Putative cell wall binding repeat 2; Region:
                     CW_binding_2; pfam04122"
                     /db_xref="CDD:217910"
     misc_feature    469087..469344
                     /locus_tag="CDBI1_02030"
                     /note="Putative cell wall binding repeat 2; Region:
                     CW_binding_2; pfam04122"
                     /db_xref="CDD:217910"
     misc_feature    469354..469566
                     /locus_tag="CDBI1_02030"
                     /note="Putative cell wall binding repeat 2; Region:
                     CW_binding_2; pfam04122"
                     /db_xref="CDD:217910"
     gene            complement(470397..471296)
                     /locus_tag="CDBI1_02035"
                     /db_xref="GeneID:12216313"
     CDS             complement(470397..471296)
                     /locus_tag="CDBI1_02035"
                     /note="COG2801 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase, catalytic region"
                     /protein_id="YP_006197573.1"
                     /db_xref="GI:384359721"
                     /db_xref="GeneID:12216313"
                     /translation="MVITLSKNEDKYKAIQSLFNEKKASLIQLCEIAKVNRSGYYKWL
                     NRDKSNLELENIKLATLITKIYEEKKGVFGSLRMTLQLNREYKLNVNHKRVYRLMRAV
                     GLRSICRKKKFSYVKCTQEVIAENVLNRKFSADKTSQKWLTDVTEFKLTDGTKAYLSA
                     ILDLGDRSIVSYVIGKSNNNNLVFETFNKAIEVYPNAKPIFHSDRGYQYTSRVFKSKL
                     LTQGMIQSMSRVGHCIDNAPMEGFWGILKVEMYYLRKFDTYEQLVKAIDDYIYYYNNF
                     RYQKRLNSMSPLEFRKYLSTEIA"
     misc_feature    complement(470430..471194)
                     /locus_tag="CDBI1_02035"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     misc_feature    complement(470961..471128)
                     /locus_tag="CDBI1_02035"
                     /note="HTH-like domain; Region: HTH_21; pfam13276"
                     /db_xref="CDD:257619"
     misc_feature    complement(470547..470882)
                     /locus_tag="CDBI1_02035"
                     /note="Integrase core domain; Region: rve; pfam00665"
                     /db_xref="CDD:250040"
     misc_feature    complement(470421..470579)
                     /locus_tag="CDBI1_02035"
                     /note="Integrase core domain; Region: rve_2; pfam13333"
                     /db_xref="CDD:257663"
     gene            complement(471290..471961)
                     /locus_tag="CDBI1_02040"
                     /db_xref="GeneID:12216314"
     CDS             complement(471290..471961)
                     /locus_tag="CDBI1_02040"
                     /note="COG2963 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197574.1"
                     /db_xref="GI:384359722"
                     /db_xref="GeneID:12216314"
                     /translation="MSKTKVSSEQKIEAIESYLKGENSVIKIMEELNIGKRTFREWMR
                     NYETFGNDGLIKQSHKSCYSKEFKLNAIESYLNGEGSYDTISKKYKMRSVHPLKAWVK
                     EYNLHKVIKETPKGGLFMETRKTTLDERAEIVKDCIEHGLNYNLIAKKYFVSYSQVRR
                     WTLKYKENGIDALEDRRGKSKKEDELTQLDEIKLELKIVKAEKHKLQLENEFLKKLKI
                     IERGW"
     misc_feature    complement(<471716..471961)
                     /locus_tag="CDBI1_02040"
                     /note="Transposase and inactivated derivatives [DNA
                     replication, recombination, and repair]; Region: COG2963"
                     /db_xref="CDD:225511"
     misc_feature    complement(471782..471934)
                     /locus_tag="CDBI1_02040"
                     /note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
                     /db_xref="CDD:222191"
     misc_feature    complement(471440..471775)
                     /locus_tag="CDBI1_02040"
                     /note="Transposase and inactivated derivatives [DNA
                     replication, recombination, and repair]; Region: COG2963"
                     /db_xref="CDD:225511"
     misc_feature    complement(471419..471577)
                     /locus_tag="CDBI1_02040"
                     /note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
                     /db_xref="CDD:222191"
     gene            473035..474435
                     /locus_tag="CDBI1_02045"
                     /db_xref="GeneID:12216315"
     CDS             473035..474435
                     /locus_tag="CDBI1_02045"
                     /note="'COG3829 Transcriptional regulator containing PAS,
                     AAA-type ATPase, and DNA-binding domains'"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine utilization sigma-54 dependent
                     regulatory protein"
                     /protein_id="YP_006197575.1"
                     /db_xref="GI:384359723"
                     /db_xref="GeneID:12216315"
                     /translation="MNQEIFFKIMNEILENIDEGVHFVNKDGKTIIYNNSVQKMEKMN
                     RHDILANSFFDIVNKMKINRSTLLEVLEKREVIKDNIQKYLDKNGKEITAINTTIPID
                     IKGEFVGALEISKNMTTIENLLNRNYKKNLVNKVSSRQKKGYEFDDILGESNLIKEAI
                     EKSKKACKSDASVFIYGETGTGKELFSQSIHYGSNRRNYPFIAQNCAALPESLFEGIL
                     FGTSKGGFTGAIDRPGLFEQANKGTLLLDEINSMPIMLQAKLLRVLQEGYVRRVGGTK
                     DIPIDVRIIATTNESPKVILNEHKMRKDLYYRLNIIHIKIPPLRDRKEDILLLCKKFI
                     SKYNKKLNKKVVGISDEAIKILKNYDWQGNIRELENIIYCTMSMMEDEVQIETSMINL
                     NDYYNLKENKESNNYSLNDLEGKTLSKIISEIEEKYIYESLEKASYNITKAASILGMN
                     RQNLQYKIKKYNIKIL"
     misc_feature    473101..473388
                     /locus_tag="CDBI1_02045"
                     /note="PAS domain; Region: PAS_9; pfam13426"
                     /db_xref="CDD:222120"
     misc_feature    473302..474423
                     /locus_tag="CDBI1_02045"
                     /note="Response regulator containing CheY-like receiver,
                     AAA-type ATPase, and DNA-binding domains [Signal
                     transduction mechanisms]; Region: AtoC; COG2204"
                     /db_xref="CDD:225114"
     misc_feature    473506..473988
                     /locus_tag="CDBI1_02045"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    473563..473586
                     /locus_tag="CDBI1_02045"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(473566..473589,473773..473775,473899..473901)
                     /locus_tag="CDBI1_02045"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    473761..473778
                     /locus_tag="CDBI1_02045"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    473956..473958
                     /locus_tag="CDBI1_02045"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    <474349..474417
                     /locus_tag="CDBI1_02045"
                     /note="Bacterial regulatory protein, Fis family; Region:
                     HTH_8; pfam02954"
                     /db_xref="CDD:202485"
     gene            474691..475758
                     /locus_tag="CDBI1_02050"
                     /db_xref="GeneID:12216316"
     CDS             474691..475758
                     /locus_tag="CDBI1_02050"
                     /note="COG3804 Uncharacterized conserved protein related
                     to dihydrodipicolinate reductase"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate reductase"
                     /protein_id="YP_006197576.1"
                     /db_xref="GI:384359724"
                     /db_xref="GeneID:12216316"
                     /translation="MRKVRVGIWGFGAMGIGMANMILKKEGIEIVSVCSRSTSGKSMY
                     DVLGIERGERPEVIINKNYEEVFREKSVDVVLLATDSFTKKAFDKIIFLLNRKINVIS
                     TAEQMAYPQADDADLAKKMDEVAKENGVSILGTGINPGFVLDLLVLALSGTCEEVTSI
                     KAKRVNDLSPFGKSVMEEQGVGVTREEFIKGVEDKTIAGHVGFVESINMIADGLGWKL
                     DKIEQTKEPIMTTVDRKSKYGEALAGNVAGCRQCGYGYVNGDVLIEMEHPQQIIPEVE
                     GIKTGDYVSIKGIPNIDLQINPEIPGGVGTYAMIVNSIPLIINARPGLKTMLDIPVPR
                     AIMGDIRNQIEVELEEESKAN"
     misc_feature    474700..475683
                     /locus_tag="CDBI1_02050"
                     /note="Uncharacterized conserved protein related to
                     dihydrodipicolinate reductase [Function unknown]; Region:
                     COG3804"
                     /db_xref="CDD:226326"
     misc_feature    474700..475080
                     /locus_tag="CDBI1_02050"
                     /note="Oxidoreductase family, NAD-binding Rossmann fold;
                     Region: GFO_IDH_MocA; pfam01408"
                     /db_xref="CDD:201778"
     gene            475855..476163
                     /locus_tag="CDBI1_02055"
                     /db_xref="GeneID:12216317"
     CDS             475855..476163
                     /locus_tag="CDBI1_02055"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197577.1"
                     /db_xref="GI:384359725"
                     /db_xref="GeneID:12216317"
                     /translation="MDAKINDWVIIHNIVLTPEERAPQVPEDTKKVSLEMWVKGFIQS
                     DASIGDLVEVKTITGRLVKGNLLKVNPYYTHDYGKCIPELLQIGIQAKEILFGGVYNE
                     "
     gene            476156..477586
                     /locus_tag="CDBI1_02060"
                     /db_xref="GeneID:12216318"
     CDS             476156..477586
                     /locus_tag="CDBI1_02060"
                     /note="COG0133 Tryptophan synthase beta chain"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="YP_006197578.1"
                     /db_xref="GI:384359726"
                     /db_xref="GeneID:12216318"
                     /translation="MNNSTSIKDMSYQAVMGRNNEIMKNAIGLDYSSFEQEGIGFDYE
                     KMMSETGYTLQDIEAIQSQYAVGNTPLIELKNLTKLARKCAKEGKGAKIFVKDEAMNA
                     SGSFKARRAATAVYHAKQMGYKGVIAATSGNYGAAVASQAAMQGLKCIIVQECYDSNG
                     VGQPEIIEKARKCEAYGAEVVQLTVGPELFYTFLVLLEETGYFNASLYSPFGIAGVET
                     LGYELAIQFREKYKKDPDIVVCTNAGGGNLTGTARGLIKAGSINTKVVGASVDLKGLH
                     MASDNQFNKKSFTTGHTGFGIPYCTWPDRSDVPRSAARPLRYMDRYVLVKQGEVFYTT
                     ELLAQLEGIERGPAGNTSLAAAFSLAQELDEDKVIVVQETEYTGAGKHICPQLTFARE
                     NGIDIKFGNPREEIAGVNLILPERPELLKCVDIDMNKIRKSFIKNCISNNHIDNIDKL
                     SNRDIEFLMEEVKSSRDFVVDVLNNL"
     misc_feature    476345..477268
                     /locus_tag="CDBI1_02060"
                     /note="Pyridoxal-phosphate dependent enzyme; Region: PALP;
                     pfam00291"
                     /db_xref="CDD:215840"
     misc_feature    476360..477268
                     /locus_tag="CDBI1_02060"
                     /note="Tryptophan synthase beta superfamily (fold type
                     II); this family of pyridoxal phosphate (PLP)-dependent
                     enzymes catalyzes beta-replacement and beta-elimination
                     reactions. This CD corresponds to
                     aminocyclopropane-1-carboxylate deaminase (ACCD),
                     tryptophan...; Region: Trp-synth-beta_II; cd00640"
                     /db_xref="CDD:107202"
     misc_feature    order(476471..476476,476552..476554,476885..476899,
                     477197..477199)
                     /locus_tag="CDBI1_02060"
                     /note="pyridoxal 5'-phosphate binding pocket [chemical
                     binding]; other site"
                     /db_xref="CDD:107202"
     misc_feature    476474..476476
                     /locus_tag="CDBI1_02060"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:107202"
     gene            477664..478038
                     /locus_tag="CDBI1_02065"
                     /db_xref="GeneID:12216319"
     CDS             477664..478038
                     /locus_tag="CDBI1_02065"
                     /codon_start=1
                     /transl_table=11
                     /product="D-ornithine aminomutase S component"
                     /protein_id="YP_006197579.1"
                     /db_xref="GI:384359727"
                     /db_xref="GeneID:12216319"
                     /translation="MKKREDDFEVRRKHLQELSDDELKERFWNLATQIVEPMIELGKK
                     NTTPSIERSVLLRMGFSSLEVKPILEGVMERGLIGKGAGHVVYKLAKSKNITVREAGL
                     LLVKGEYWDEVTCLFREGVESC"
     gene            478032..480236
                     /locus_tag="CDBI1_02070"
                     /db_xref="GeneID:12216320"
     CDS             478032..480236
                     /locus_tag="CDBI1_02070"
                     /note="COG0422 Thiamine biosynthesis protein ThiC"
                     /codon_start=1
                     /transl_table=11
                     /product="D-ornithine aminomutase E component"
                     /protein_id="YP_006197580.1"
                     /db_xref="GI:384359728"
                     /db_xref="GeneID:12216320"
                     /translation="MLKENKKLDIDYILKDLDKYKPKRRGWVWREHLENLEMGPFKYK
                     DCTKPLKKSVGLPSSKYFNNIDPQPSPVITTEIASGRFEDDIRRMRMAAHHGADHLMV
                     IRTAGQSHFDGLIEGTPQGIGGVPITRKQVRAQRKALDFIEEEVGRPINYHSYVSGVA
                     GPEVAVMFAEEGVNGAHQDPQYNVLYRNINMVRSFVDACEAKKIMAFANIAQIDGAHN
                     ANATAREAWKVMPELMVQHALNSIFSEKIGIDKSNICLSTVPPTAPPAPCLRIDLPYA
                     VALRELFSDYKMRAQMNTKYMESSTREATVTHVLNLLTSVLTRADIQSTITPDEGRNV
                     PWHIYNIEACDTAKQALVGMDGLMDMIELKDVGELRDKARELKERAVLYMEEISEVGG
                     YFESVEQGFFVDSGNYPERNGDGISRKIKGGVGEGTVYEREEDYLAPVTAHFGYNNVA
                     QYDENAIDNPSMLIDGCTFENPDKIIYIDELDDFDNVENRLKESYEYRNGTKIKPEME
                     WCADGIVMITMMLPTDKRTAEFAALEFVKKMNLQEIEVISREVMHESEGTRIEVKGRV
                     PFDIDLNNLVIPEEPKVLTDEEIRADIEEKPMKIVSATVGEDEHSVGLREIIDIKHGG
                     IEKYGIECHYLGTSVPVEKLVDAAIELNADAILASTIISHDDIHYKNMKKLHDYCVEK
                     GIRDKVMIACGGTQVTPEIAVEQGIDAGFGRNSKGIHVATFLVEKRREMSNK"
     misc_feature    <478212..479348
                     /locus_tag="CDBI1_02070"
                     /note="D-Lysine 5,6-aminomutase alpha subunit; Region:
                     Lys-AminoMut_A; pfam09043"
                     /db_xref="CDD:117609"
     misc_feature    479826..480194
                     /locus_tag="CDBI1_02070"
                     /note="B12 binding domain (B12-BD). This domain binds
                     different cobalamid derivates, like B12 (adenosylcobamide)
                     or methylcobalamin or methyl-Co(III)
                     5-hydroxybenzimidazolylcobamide, it is found in several
                     enzymes, such as glutamate mutase, methionine synthase...;
                     Region: B12-binding; cd02067"
                     /db_xref="CDD:239018"
     misc_feature    order(479850..479870,479880..479882,480000..480008,
                     480012..480020,480114..480116,480162..480164,
                     480171..480173,480180..480182)
                     /locus_tag="CDBI1_02070"
                     /note="B12 binding site [chemical binding]; other site"
                     /db_xref="CDD:239018"
     misc_feature    479859..479861
                     /locus_tag="CDBI1_02070"
                     /note="cobalt ligand [ion binding]; other site"
                     /db_xref="CDD:239018"
     gene            480236..481645
                     /locus_tag="CDBI1_02075"
                     /db_xref="GeneID:12216321"
     CDS             480236..481645
                     /locus_tag="CDBI1_02075"
                     /codon_start=1
                     /transl_table=11
                     /product="component of D-ornithine aminomutase"
                     /protein_id="YP_006197581.1"
                     /db_xref="GI:384359729"
                     /db_xref="GeneID:12216321"
                     /translation="MENSKVSLKIDVLVAEIGSTTTVVNAFHDINTNNPIFLGQGQAP
                     TTVFEGGDVRNGLSGAIKDLANKLSVDDIEYNDMFATSSAAGGLKMTVHGLVYDMTVK
                     AAKEAALGAGAVIRQITSGRIKRTDLNKIKEINPNIILIAGGVDYGERDTAIYNAEMI
                     ASMNLGIPVIYAGNVENQEEIRLIFEDTNYKLYITENVYPKIDLLNIEPTRRIIQSVF
                     EEHITTAPGMKYIKEMVNENITPTPGAVMEASKLLYKNIGDLLTLDVGGATTDVHSVT
                     DGSDYINKILVNPEPTAKRSVEGDLGVYVNMKNIVEVIGKENLQSELYIDIDAVIENY
                     PPIPKSKEEILFVERLTKEAVVKAMLRHSGKIRNIYGTTGKVKIAEGKDLTEVRYIVG
                     TGGALTRLPSRIEILDNMLKYNKNNELLFPKEKTKILIDNDYIMASMGVLSKKYEEAS
                     LKLLLKSLNFEEERLCILG"
     misc_feature    480266..481558
                     /locus_tag="CDBI1_02075"
                     /note="MutL protein; Region: MutL; pfam13941"
                     /db_xref="CDD:222464"
     gene            481630..482694
                     /locus_tag="CDBI1_02080"
                     /db_xref="GeneID:12216322"
     CDS             481630..482694
                     /locus_tag="CDBI1_02080"
                     /note="COG3457 Predicted amino acid racemase"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="YP_006197582.1"
                     /db_xref="GI:384359730"
                     /db_xref="GeneID:12216322"
                     /translation="MYPRLEIDIEKLKHNAKLISQMCHERSIKISFVTKSFCAQKEIV
                     EEICSEGIDHIADSRIQNLKKLQDINLPKILIRIPMLSELEEVINYCDISFNSELETI
                     KKLNELCESKNIIHKIVLMFDLGDLREGYFYEEDFFNNVREIVRLKNIEIIGIATNLT
                     CYGAIIPSRENIGRLVSIAKRMEEKFGINLEIVSGGNSSSIHLLINNNMPEGITNLRI
                     GESILLGRETAYGENINGTYQDAFKLICQVVECKEKPSVPIGEIGVDAFRNKPVYEDK
                     GILKRAIIAIGKQDINIDSLIPIDTDIKILGASSDHMILDVSNTKYDYKLGDNLEFLL
                     TYGGIMSSSTSKYVSKKIIV"
     misc_feature    481633..482688
                     /locus_tag="CDBI1_02080"
                     /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
                     Enzyme Alanine Racemase-like 1; Region:
                     PLPDE_III_AR_like_1; cd06815"
                     /db_xref="CDD:143490"
     misc_feature    481633..482679
                     /locus_tag="CDBI1_02080"
                     /note="Predicted amino acid racemase [Amino acid transport
                     and metabolism]; Region: COG3457"
                     /db_xref="CDD:225988"
     misc_feature    order(481633..481635,481732..481734,481738..481740,
                     481801..481806,481810..481815,481831..481833,
                     481876..481878,481921..481923,481927..481929,
                     481939..481941,482008..482019,482374..482385,
                     482470..482472,482476..482478,482482..482484,
                     482491..482496,482671..482673)
                     /locus_tag="CDBI1_02080"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143490"
     misc_feature    order(481726..481728,481732..481734,481795..481797,
                     481858..481860,481990..481992,482011..482013,
                     482101..482103,482218..482223,482278..482289,
                     482491..482493)
                     /locus_tag="CDBI1_02080"
                     /note="active site"
                     /db_xref="CDD:143490"
     misc_feature    order(481726..481728,481732..481734,481795..481797,
                     481858..481860,481990..481992,482101..482103,
                     482218..482223,482278..482289)
                     /locus_tag="CDBI1_02080"
                     /note="pyridoxal 5'-phosphate (PLP) binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:143490"
     misc_feature    order(481732..481734,482011..482013,482101..482103,
                     482287..482289)
                     /locus_tag="CDBI1_02080"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:143490"
     misc_feature    481732..481734
                     /locus_tag="CDBI1_02080"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:143490"
     gene            482724..484145
                     /locus_tag="CDBI1_02085"
                     /db_xref="GeneID:12216323"
     CDS             482724..484145
                     /locus_tag="CDBI1_02085"
                     /note="COG1757 Na+/H+ antiporter"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="YP_006197583.1"
                     /db_xref="GI:384359731"
                     /db_xref="GeneID:12216323"
                     /translation="MKERECRKASLFDAMIPITCLILFLSLGVLVYGSSPHVPLIGAA
                     AVAGLVAVYRLGFKWKELELSMFNSIKMAMQAILIIIIIGVLIGTWIVSGVVPCMIYW
                     GLKILSPNIFLVASTLVCAIVSLATGSSWSTMGTVGVALLGIGQSLGMPIGLIVGSII
                     SGAYFGDKLSPLSETTNLAPAMAGTDLFTHIKYMLYSTIPSLLICLVIYGVIGMKYSG
                     QALDIKQIELIRSTLDSTFNTLSPVLLLAPAIVIGLVVFKVPAIPGLIVGAVLGVLFA
                     VVFQGESMNTILDAAQNGYVSSTQIQEVDALLSKGGIMNMMSTVSLTICALSLGGILE
                     KTGMLEVVASSLLRLAKGVFGTVLCTMVTCTITNIIAGEQYLSIVIPGRMYNKEYKKR
                     GIHPKMLSRALEDSGTLTSPLVPWNTCGAYITATLGVSALTYGPYALLNIINPIVSLV
                     LIACKFKIARIEDEPETCLNFDV"
     misc_feature    482742..484073
                     /locus_tag="CDBI1_02085"
                     /note="Na+/H+ antiporter NhaC; Region: antiport_nhaC;
                     TIGR00931"
                     /db_xref="CDD:188097"
     gene            484574..485038
                     /locus_tag="CDBI1_02090"
                     /db_xref="GeneID:12216324"
     CDS             484574..485038
                     /locus_tag="CDBI1_02090"
                     /note="'COG4978 Transcriptional regulator,
                     effector-binding domain/component'"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197584.1"
                     /db_xref="GI:384359732"
                     /db_xref="GeneID:12216324"
                     /translation="MTRISNITIAEQSEYCFLAIRKTIDFMVEFSEFSKQSFEKISKY
                     LEERGILSSGAPIVCFHNMDLAKLDVEVGFPVATYIDGKNEILQRIVPAQKIITAIDL
                     GPYELQDPTLEDLFSWANSNGYKLHGDIYYQYLNDINRPASEYLTKMMLPII"
     misc_feature    484580..485032
                     /locus_tag="CDBI1_02090"
                     /note="GyrI-like small molecule binding domain; Region:
                     GyrI-like; cl01368"
                     /db_xref="CDD:242457"
     gene            485336..485698
                     /locus_tag="CDBI1_02095"
                     /db_xref="GeneID:12216325"
     CDS             485336..485698
                     /locus_tag="CDBI1_02095"
                     /note="COG0346 Lactoylglutathione lyase and related
                     lyases"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197585.1"
                     /db_xref="GI:384359733"
                     /db_xref="GeneID:12216325"
                     /translation="MKIYDILTRFYIQDIEKAIPFYENLLKEKCSLRFSYKEVGLELA
                     QIGNVLLLSGSDDALKPFIETKSTFMVDSVDEWRSYLLDNGAVVVRDKKKVPTGYNMT
                     LRHPDGTIIEYVQHTKQD"
     misc_feature    485357..485671
                     /locus_tag="CDBI1_02095"
                     /note="This domain superfamily is found in a variety of
                     structurally related metalloproteins, including the type I
                     extradiol dioxygenases, glyoxalase I and a group of
                     antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
                     cd06587"
                     /db_xref="CDD:211348"
     misc_feature    order(485366..485368,485453..485455,485486..485488,
                     485492..485494,485537..485539,485639..485641,
                     485663..485665,485669..485671)
                     /locus_tag="CDBI1_02095"
                     /note="active site"
                     /db_xref="CDD:211348"
     gene            486293..487153
                     /locus_tag="CDBI1_02100"
                     /db_xref="GeneID:12216326"
     CDS             486293..487153
                     /locus_tag="CDBI1_02100"
                     /note="COG2207 AraC-type DNA-binding domain-containing
                     proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="YP_006197586.1"
                     /db_xref="GI:384359734"
                     /db_xref="GeneID:12216326"
                     /translation="MSYKVINVITAIDYIEEHLSEKLDLDIIANAVHYSKYHLHRTFT
                     TSVGLTMHDYIKRRKLTEAAKLLVFSKKPIIEIALIAGYESQQAFTSIFKAMYKKSPN
                     KYRKEQEFYPLQLRFVLKKDNLFSKNVLELEKEIKLASMSDIPLWMNLVRLVIDGFPN
                     LQEEEYIYQLEQYILEERALILKLNNVAIANMVFNRETRSIDFFGIHPQYRNSDIAQV
                     FLKKVIEDFLIDTDISITTFREGDKADTGHRDMIKKLGFAEAELLVEFGYPTQKFILP
                     CVEERDNRQN"
     misc_feature    486335..486460
                     /locus_tag="CDBI1_02100"
                     /note="Bacterial regulatory helix-turn-helix proteins,
                     AraC family; Region: HTH_AraC; pfam00165"
                     /db_xref="CDD:215763"
     misc_feature    486356..486607
                     /locus_tag="CDBI1_02100"
                     /note="helix_turn_helix, arabinose operon control protein;
                     Region: HTH_ARAC; smart00342"
                     /db_xref="CDD:197666"
     misc_feature    486500..486610
                     /locus_tag="CDBI1_02100"
                     /note="Bacterial regulatory helix-turn-helix proteins,
                     AraC family; Region: HTH_AraC; pfam00165"
                     /db_xref="CDD:215763"
     gene            487411..489525
                     /locus_tag="CDBI1_02105"
                     /db_xref="GeneID:12216327"
     CDS             487411..489525
                     /locus_tag="CDBI1_02105"
                     /note="COG3973 Superfamily I DNA and RNA helicases"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197587.1"
                     /db_xref="GI:384359735"
                     /db_xref="GeneID:12216327"
                     /translation="MSENKQVVNCDIIASNSKHNMCEHDVELLTFFPDEIAHLIEINN
                     KLDNAFKKAENLVDKLDKDYMDAKMYMVKNRGEIDPHEMFQNEQGLKQIDNYGAFMVK
                     VRDKINKIKDSPYFARIDFRLKDMDDESKYYIGRFAFDYEDELIILDWRSPIASMFYD
                     YEIGKAGYDAPIGWVDGEITRKRQFKIKNGKLEYALESSINIQDDILQKELSHTSDEK
                     MKSIISTIQKEQNQIIRNDKADTLIIQGVAGSGKTSIALHRIAFLLYRFKDKISANNV
                     IILSPNKVFGDYISNVLPELGEEPLCELSFENIAEVQLDRVINFESEKDPLEINDAKW
                     SERVRFKSTLDFVKLIDDYIKQMPNKIFIPKDYTFGSFTAKSDWIQSRFEAYNRYPVK
                     KRLEKVAEDIHYKFESDNIMEEDLPKVKSILKSLNGMLTIKNTLTLYKDFFKQMNISN
                     MFVMAEKKTLEWSDVYPFIYIHAAYEGIQEDKIIRHIVIDEMQDYTPIQYAVINLLFK
                     CKKTILGDFGQLVNPNHTHTLDDMKQLYNDGELVMLNKSYRSTFEIINFAKKIQDISS
                     LEPIERHGEEPALLKCNNEQDEINKIKIEIEEFKKSDNATLGIILKTDNDAKAVYDAL
                     REEYSVHLISSESSSFTKGVSITSIKMSKGLEFDEVIVPSVNNKTYYSDYDRSLLYIA
                     CTRAMHKLKLTYVGTLTQLISM"
     misc_feature    487723..489498
                     /locus_tag="CDBI1_02105"
                     /note="Superfamily I DNA and RNA helicases [General
                     function prediction only]; Region: COG3973"
                     /db_xref="CDD:226482"
     misc_feature    488107..>488286
                     /locus_tag="CDBI1_02105"
                     /note="Part of AAA domain; Region: AAA_19; pfam13245"
                     /db_xref="CDD:222005"
     misc_feature    489235..489480
                     /locus_tag="CDBI1_02105"
                     /note="Family description; Region: UvrD_C_2; pfam13538"
                     /db_xref="CDD:222209"
     gene            complement(489787..492030)
                     /locus_tag="CDBI1_02110"
                     /db_xref="GeneID:12216328"
     CDS             complement(489787..492030)
                     /locus_tag="CDBI1_02110"
                     /note="COG0178 Excinuclease ATPase subunit"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic resistance ABC transporter
                     ATP-binding protein"
                     /protein_id="YP_006197588.1"
                     /db_xref="GI:384359736"
                     /db_xref="GeneID:12216328"
                     /translation="MSNIIIKGLTQNNLKNISFKIPKNKIVVFTGVSGSGKSSIVFDT
                     IAAESQRQMNETYSSFIRNRLPKYRKPQVELIDNLTASVIVDQTPLGGNARSTVGTIS
                     DLYSSLRLLFSRIGEPYIGTTSYFSFNDPNGMCKNCSGIGRVKVINIESIINPENSWN
                     TGCINDSLFKPNSWYWKQYAESGLFDLDKPIKDYSFEEYNLLLYGSKNKDGKQENPKI
                     EGIFNKYNQTYLNRDISNMSKHTKEKSERLITDKECPVCHGKRLNKETLNCNILGYSI
                     ADMCNMELTDLYDLLLQIKDKRTETVIKTLTDGLKRMIDIGLPYLHLNRESSSLSGGE
                     AQRLKLVRYMGSSLTGMTYIFDEPSAGMHPRDVHRMNQLLKKLRDRGNTVLVVEHDKD
                     VISIADEVIDIGPSAGTQGGHVVFQGSYDKLLLANTLTSNAMNLSLPIKTDSRHPKGT
                     LPIRDACINNLKHIDVDLPVGIMTVVTGVAGSGKSTLISRVFAQKYEKDVIKIDQSPV
                     TATNRSMPATFLGFFDEIRKVFAKENNVEEGLFSFNSKGACPVCDGKGVLVTELVFMD
                     PIINTCEACKGTRYSEEVLSKLYKGKCIVDVLSMTVDESLEFFTEKKLCKILQTMKDV
                     GLPYMTLGQPLSTLSGGERQRIKLAKNLNKKGTIYILDEPTTGLHGSDIEKLMLIFEH
                     IVDKGNTVIIIEHNLDVLKQADWVIDIGPDGGKNGGQVVFEGTPLEMFERGCTITSDF
                     LRKSINI"
     misc_feature    complement(<491683..492021)
                     /locus_tag="CDBI1_02110"
                     /note="ATP-binding cassette domain I of the excision
                     repair protein UvrA; Region: ABC_UvrA_I; cd03270"
                     /db_xref="CDD:213237"
     misc_feature    complement(490777..>491103)
                     /locus_tag="CDBI1_02110"
                     /note="ATP-binding cassette domain I of the excision
                     repair protein UvrA; Region: ABC_UvrA_I; cd03270"
                     /db_xref="CDD:213237"
     misc_feature    complement(489853..490680)
                     /locus_tag="CDBI1_02110"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:247755"
     misc_feature    complement(489928..490614)
                     /locus_tag="CDBI1_02110"
                     /note="AAA domain; Region: AAA_21; pfam13304"
                     /db_xref="CDD:222036"
     misc_feature    complement(490576..490599)
                     /locus_tag="CDBI1_02110"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(order(489946..489948,490042..490047,
                     490516..490518,490573..490581,490585..490590))
                     /locus_tag="CDBI1_02110"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(490516..490527)
                     /locus_tag="CDBI1_02110"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(490090..490119)
                     /locus_tag="CDBI1_02110"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(490042..490059)
                     /locus_tag="CDBI1_02110"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(490024..490035)
                     /locus_tag="CDBI1_02110"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(489940..489960)
                     /locus_tag="CDBI1_02110"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            492362..493078
                     /locus_tag="CDBI1_02115"
                     /db_xref="GeneID:12216329"
     CDS             492362..493078
                     /locus_tag="CDBI1_02115"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_006197589.1"
                     /db_xref="GI:384359737"
                     /db_xref="GeneID:12216329"
                     /translation="MILIVILSIFIIASINIIILGKENIRDIVIPLTLFIVSDFLFLC
                     GNIICRGGVMLLFIGLFAIPLMLIAFIWICVHMIKLYYKKDLNKRKMIGCIFSIFISI
                     GTIFIPSPSESFRFKLYEKDYSVVAKAILKVYDEKKLSSESVFYIQSDKNELEKIFSK
                     EVIKKMKKLNRNLDVVKISGNRNLVYFFFGAELQSIDGIVIFKDLKHVKPKLDFINRS
                     IQAPRLEYITNNVYYFKGEL"
     gene            493106..494044
                     /locus_tag="CDBI1_02120"
                     /db_xref="GeneID:12216330"
     CDS             493106..494044
                     /locus_tag="CDBI1_02120"
                     /note="COG2602 Beta-lactamase class D"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase"
                     /protein_id="YP_006197590.1"
                     /db_xref="GI:384359738"
                     /db_xref="GeneID:12216330"
                     /translation="MKRKNNFIWIVILLVVVAMGVYYVGRKHNNTKQKHDKNHINSEL
                     NKSKVENNDKNKKEKINMVDYSDCFEGISGGAIFYNTKNKEYNIYNKELIETRRSPCS
                     TFKIVSTLIGLEKGVINSKESVMGYDGTEYPNKNWNKNLSLEEAFKESCVWYYKKLID
                     KVDAKSVQNILDDLKYGNCDISEWEGDLKNGKGHLNGFWLESSLQISPKEQVQTMAKI
                     FEGDTNFKKEHINILRDIMKIDVNDKNINVYGKTGTGFDEKNKRVDAWFVGMLEREGD
                     TYYFAIKSDDSNKEITGPKVKEIAINIIKKYYSVRE"
     misc_feature    493289..494026
                     /locus_tag="CDBI1_02120"
                     /note="Beta-lactamase class D [Defense mechanisms];
                     Region: COG2602"
                     /db_xref="CDD:225322"
     gene            494388..495071
                     /locus_tag="CDBI1_02125"
                     /db_xref="GeneID:12216331"
     CDS             494388..495071
                     /locus_tag="CDBI1_02125"
                     /note="'COG1136 ABC-type antimicrobial peptide transport
                     system, ATPase component'"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="YP_006197591.1"
                     /db_xref="GI:384359739"
                     /db_xref="GeneID:12216331"
                     /translation="MEILKCENLTKIYGSNQTRVTALNNVNLSVQKGDFVSIVGASGS
                     GKSTLLHLLGGVDRPTSGKIYVEDTEISSLKEEALAVFRRRKVGLIYQFYNLIPTLDV
                     RKNILLPMLLDKRKVDEDRFSEIVSILGLSDRLNHLPSQLSGGQQQRVSIARSLIYRP
                     AILLADEPTGNLDRKNSEEIVDLLNLSNKRFNQTILLITHDEKIALEANRIVTMEDGV
                     IVSEKVVKK"
     misc_feature    494394..495059
                     /locus_tag="CDBI1_02125"
                     /note="ABC-type antimicrobial peptide transport system,
                     ATPase component [Defense mechanisms]; Region: SalX;
                     COG1136"
                     /db_xref="CDD:224059"
     misc_feature    494397..495044
                     /locus_tag="CDBI1_02125"
                     /note="ATP-binding cassette domain of the transporters
                     involved in export of lipoprotein and macrolide, and cell
                     division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255"
                     /db_xref="CDD:213222"
     misc_feature    494505..494528
                     /locus_tag="CDBI1_02125"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213222"
     misc_feature    order(494514..494519,494523..494531,494661..494663,
                     494883..494888,494985..494987)
                     /locus_tag="CDBI1_02125"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213222"
     misc_feature    494652..494663
                     /locus_tag="CDBI1_02125"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213222"
     misc_feature    494811..494840
                     /locus_tag="CDBI1_02125"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213222"
     misc_feature    494871..494888
                     /locus_tag="CDBI1_02125"
                     /note="Walker B; other site"
                     /db_xref="CDD:213222"
     misc_feature    494895..494906
                     /locus_tag="CDBI1_02125"
                     /note="D-loop; other site"
                     /db_xref="CDD:213222"
     misc_feature    494973..494993
                     /locus_tag="CDBI1_02125"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213222"
     gene            495068..497728
                     /locus_tag="CDBI1_02130"
                     /db_xref="GeneID:12216332"
     CDS             495068..497728
                     /locus_tag="CDBI1_02130"
                     /note="'COG0577 ABC-type antimicrobial peptide transport
                     system, permease component'"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="YP_006197592.1"
                     /db_xref="GI:384359740"
                     /db_xref="GeneID:12216332"
                     /translation="MNILQEYTLDFVRRNKRSSIAIMLAILLTTTMMSSLCGLLYTMW
                     TDFIRLSIEKEGNWHGELFDYTYGSDLPLIENFSSVDDVMVKGQWYVGKINDEKRDYI
                     IYRNATSEYWNSMPEKDTIIEGRRPNNANEIALSKQYFENNPSVKIGDKITLPIGDRI
                     LNGKPLEPIAQKSKGESFKKISETTLTIVGKVDVSTSSVIPAYTALGYLDRTSIKPND
                     SITVYLRFKNIRDTYKELPKLAKSLGWKTNEYGKYNLKYNSNYLLKMLVFSPEQKASM
                     SSISKFSTPIMYLTIAIFTVAVFVMVIYNAFSLSANARLTQLGILSSVGASPKQIKMS
                     VVFEGFLLTIIPLPIGLFLGWLLCNRLIVYINSVNYHTDVPEVVFTYGIPAFLPAVLL
                     TIVTVWISALIPARKVSKISPIEAIRQGDSVKIKKSHKYSLGKIFGIEGELASNALRA
                     RKKSYRTATISLTLSFLLLTCFLHIIANQEGAKAVYGSDNYKDQRDIAVYLENSEPVE
                     SAFIEKLDNTEGVKSSLYYQKMSASTWLTEKDASKELAKNGGFKSIVSSKKYSPIERD
                     GKFRIISNIIGLDDKSFTEYCRQISVDPKLFYDTKNPTSIVYNKEEDINRSTRRNKVY
                     IDYLNLSIGDNIKLNEKVYDEDKGDYTYNMKVGAITSTLPKTVDTSSKYTLMQIVPMS
                     MVQEISKNYDEVSRLRSNRLIGVFKVNNREDIPRVREKLESIYNKDYGSGDYSIEDVL
                     ESEKQKASGIKTMNLIVGFITGLLAMIGLSNVLATVSGNTRSRRQEFAMLRSVGLSPE
                     GIKKMLVLEGLFLGITPLLLSIPVQIGIVYAFLRINEIYFIEYLPFAPISTIIGFTIL
                     ILFIVIASYMTGYKQLKNENIVESIKNETI"
     misc_feature    495098..496321
                     /locus_tag="CDBI1_02130"
                     /note="ABC-type transport system, involved in lipoprotein
                     release, permease component [Cell envelope biogenesis,
                     outer membrane]; Region: LolE; COG4591"
                     /db_xref="CDD:226957"
     misc_feature    495101..>495568
                     /locus_tag="CDBI1_02130"
                     /note="MacB-like periplasmic core domain; Region:
                     MacB_PCD; pfam12704"
                     /db_xref="CDD:221725"
     misc_feature    495938..496306
                     /locus_tag="CDBI1_02130"
                     /note="FtsX-like permease family; Region: FtsX; pfam02687"
                     /db_xref="CDD:217187"
     misc_feature    496556..497602
                     /locus_tag="CDBI1_02130"
                     /note="ABC-type antimicrobial peptide transport system,
                     permease component [Defense mechanisms]; Region: SalY;
                     COG0577"
                     /db_xref="CDD:223650"
     misc_feature    497342..>497599
                     /locus_tag="CDBI1_02130"
                     /note="FtsX-like permease family; Region: FtsX; pfam02687"
                     /db_xref="CDD:217187"
     gene            complement(497909..499090)
                     /locus_tag="CDBI1_02135"
                     /db_xref="GeneID:12216333"
     CDS             complement(497909..499090)
                     /locus_tag="CDBI1_02135"
                     /note="COG0642 Signal transduction histidine kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="YP_006197593.1"
                     /db_xref="GI:384359741"
                     /db_xref="GeneID:12216333"
                     /translation="MKTPRNINSTVVFIIFCLIITFLLSVILTTITSFNEYNVLSKAL
                     GASYEYNPKSTESILKSLKNSSDKDFKTGNEILSKHGYSKSTFWSKNFFYFLVISFGI
                     ISTMATVVYIIKHRTNKQKLSRINNLTQYLEEVNLGKESVLLRCEDEFSHLEDEIYKT
                     VGELRCSKEFALKERQTLSDNLADIAHQLKTPITSMSLMAQLLSENCPDEEIDYINRL
                     TNQISRLERLVSSLLTLSKLDASTLIFESKLIDVHSLLTYAIEPIEGSLREKHQTFTI
                     EASPSVEFEIDINWTLEALLNILKNCSEHIEDGGYIVAYYSQNPLYVEIIIEDNGKGF
                     AQEELPYIFNRFYRGKNASKDSIGIGLALSKSIIERQNGTLHAENCHNGGARFIIKFY
                     T"
     misc_feature    complement(497918..498820)
                     /locus_tag="CDBI1_02135"
                     /note="Signal transduction histidine kinase [Signal
                     transduction mechanisms]; Region: BaeS; COG0642"
                     /db_xref="CDD:223715"
     misc_feature    complement(498380..498547)
                     /locus_tag="CDBI1_02135"
                     /note="Histidine Kinase A (dimerization/phosphoacceptor)
                     domain; Histidine Kinase A dimers are formed through
                     parallel association of 2 domains creating 4-helix
                     bundles; usually these domains contain a conserved His
                     residue and are activated via...; Region: HisKA; cd00082"
                     /db_xref="CDD:119399"
     misc_feature    complement(order(498395..498397,498407..498409,
                     498416..498418,498428..498430,498437..498439,
                     498449..498451,498494..498496,498503..498505,
                     498515..498517,498524..498526,498536..498538))
                     /locus_tag="CDBI1_02135"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119399"
     misc_feature    complement(498530..498532)
                     /locus_tag="CDBI1_02135"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:119399"
     misc_feature    complement(497918..498211)
                     /locus_tag="CDBI1_02135"
                     /note="Histidine kinase-like ATPases; This family includes
                     several ATP-binding proteins for example: histidine
                     kinase, DNA gyrase B, topoisomerases, heat shock protein
                     HSP90, phytochrome-like ATPases and DNA mismatch repair
                     proteins; Region: HATPase_c; cd00075"
                     /db_xref="CDD:238030"
     misc_feature    complement(order(497930..497932,497936..497941,
                     497954..497956,497960..497962,498008..498019,
                     498089..498094,498098..498100,498104..498106,
                     498110..498112,498179..498181,498188..498190,
                     498200..498202))
                     /locus_tag="CDBI1_02135"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    complement(498188..498190)
                     /locus_tag="CDBI1_02135"
                     /note="Mg2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    complement(order(498011..498013,498017..498019,
                     498092..498094,498098..498100))
                     /locus_tag="CDBI1_02135"
                     /note="G-X-G motif; other site"
                     /db_xref="CDD:238030"
     gene            complement(499090..499752)
                     /locus_tag="CDBI1_02140"
                     /db_xref="GeneID:12216334"
     CDS             complement(499090..499752)
                     /locus_tag="CDBI1_02140"
                     /note="COG0745 Response regulators consisting of a
                     CheY-like receiver domain and a winged-helix DNA-binding
                     domain"
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator"
                     /protein_id="YP_006197594.1"
                     /db_xref="GI:384359742"
                     /db_xref="GeneID:12216334"
                     /translation="MAKILLLEDDDTITFGIKTSLEKKNHTVCCYNTIAEAKKNFDKT
                     IDLILLDLNLPDGIGYEFCQYVKSIEDTPVIFLTVRDDEKDIIRGLDMGADDYVVKPF
                     LLSVLQSRINAVLRRTHSNTNNTITCGNISLNKVEVKAYLDNVEVLLTAGEYKLLLSL
                     MENKNRAMTRTKLLEMLWDVDGNFVNDNTLTVTIKRLREKLKNPPCIKTLRGIGYRME
                     DS"
     misc_feature    complement(499096..499746)
                     /locus_tag="CDBI1_02140"
                     /note="Response regulators consisting of a CheY-like
                     receiver domain and a winged-helix DNA-binding domain
                     [Signal transduction mechanisms / Transcription]; Region:
                     OmpR; COG0745"
                     /db_xref="CDD:223816"
     misc_feature    complement(499408..499740)
                     /locus_tag="CDBI1_02140"
                     /note="Signal receiver domain; originally thought to be
                     unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
                     recently identified in eukaroytes ETR1 Arabidopsis
                     thaliana; this domain receives the signal from the sensor
                     partner in a two-component systems; Region: REC; cd00156"
                     /db_xref="CDD:238088"
     misc_feature    complement(order(499450..499455,499462..499464,
                     499519..499521,499576..499578,499597..499599,
                     499726..499731))
                     /locus_tag="CDBI1_02140"
                     /note="active site"
                     /db_xref="CDD:238088"
     misc_feature    complement(499597..499599)
                     /locus_tag="CDBI1_02140"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238088"
     misc_feature    complement(order(499576..499578,499579..499581,
                     499585..499590))
                     /locus_tag="CDBI1_02140"
                     /note="intermolecular recognition site; other site"
                     /db_xref="CDD:238088"
     misc_feature    complement(499447..499455)
                     /locus_tag="CDBI1_02140"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238088"
     misc_feature    complement(499102..499377)
                     /locus_tag="CDBI1_02140"
                     /note="Effector domain of response regulator. Bacteria and
                     certain eukaryotes like protozoa and higher plants use
                     two-component signal transduction systems to detect and
                     respond to changes in the environment. The system consists
                     of a sensor histidine kinase and...; Region: trans_reg_C;
                     cd00383"
                     /db_xref="CDD:238225"
     misc_feature    complement(order(499111..499113,499126..499128,
                     499150..499155,499177..499179,499186..499188,
                     499243..499248,499303..499305))
                     /locus_tag="CDBI1_02140"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238225"
     gene            complement(499897..500430)
                     /locus_tag="CDBI1_02145"
                     /db_xref="GeneID:12216335"
     CDS             complement(499897..500430)
                     /locus_tag="CDBI1_02145"
                     /note="COG1309 Transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="YP_006197595.1"
                     /db_xref="GI:384359743"
                     /db_xref="GeneID:12216335"
                     /translation="MNELAKEVEYTKRTIYKYFSCKEDLFFAVVLRGYKRLWDNVKIE
                     SAKGKTGFEKIKLSYFAFHKFYSVEPSLLCLMGMIGIVNSEKSDTDMLFKEKFFSFNK
                     FMFDEIQGMFEIGKNDRSIRHDIEIPTLMYSSIFTLTGFFNLLSVTGKSYLNNFNIDE
                     EKFIETTLALLIDSIKA"
     misc_feature    complement(500011..500430)
                     /locus_tag="CDBI1_02145"
                     /note="Transcriptional regulator [Transcription]; Region:
                     AcrR; COG1309"
                     /db_xref="CDD:224228"
     misc_feature    complement(500344..>500430)
                     /locus_tag="CDBI1_02145"
                     /note="Bacterial regulatory proteins, tetR family; Region:
                     TetR_N; pfam00440"
                     /db_xref="CDD:201228"
     gene            complement(500557..500763)
                     /locus_tag="CDBI1_02150"
                     /db_xref="GeneID:12216336"
     CDS             complement(500557..500763)
                     /locus_tag="CDBI1_02150"
                     /note="COG0675 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase-like protein b"
                     /protein_id="YP_006197596.1"
                     /db_xref="GI:384359744"
                     /db_xref="GeneID:12216336"
                     /translation="MVDKLYKVGKFFASSQICNKCGYKNEEVKNLNIREWICPSCNET
                     HDRDINASINILKEGLRLITIQNK"
     misc_feature    complement(500593..>500724)
                     /locus_tag="CDBI1_02150"
                     /note="Putative transposase DNA-binding domain; Region:
                     OrfB_Zn_ribbon; pfam07282"
                     /db_xref="CDD:115907"
     gene            complement(500744..501667)
                     /locus_tag="CDBI1_02155"
                     /db_xref="GeneID:12216337"
     CDS             complement(500744..501667)
                     /locus_tag="CDBI1_02155"
                     /note="COG0675 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase-like protein b"
                     /protein_id="YP_006197597.1"
                     /db_xref="GI:384359745"
                     /db_xref="GeneID:12216337"
                     /translation="MEKAYKFRMYPNKKQQELINKTFGCCRFVYNKYLAKRIEVYKND
                     KETFTYKQCSSDLTNLKKELKWLKEPDKFSLQNALKDLENAYEKFFKEKAGFPKFKSK
                     KINRFSYKTNFTNGNIMYCGQHIKLPKLGMVKIRDKQVPQGRILNATISKEPSGRYYV
                     SLCCTDVDIEVFENTNNQTGLDLGIKEFCISSCGEFIENPKYLKKSLNKLAKLQRELS
                     RKTIGSLNRNKARLKVARLQEHIANQRNDFLQKLSTKLIKENDIICIEDLQVKNMIKN
                     HKLSRLISDVSWSEFIRQLEYKANWYGRQIV"
     misc_feature    complement(500759..501667)
                     /locus_tag="CDBI1_02155"
                     /note="Transposase and inactivated derivatives [DNA
                     replication, recombination, and repair]; Region: COG0675"
                     /db_xref="CDD:223747"
     misc_feature    complement(501530..501667)
                     /locus_tag="CDBI1_02155"
                     /note="Helix-turn-helix domain; Region: HTH_OrfB_IS605;
                     pfam12323"
                     /db_xref="CDD:256981"
     misc_feature    complement(500849..501472)
                     /locus_tag="CDBI1_02155"
                     /note="Probable transposase; Region: OrfB_IS605;
                     pfam01385"
                     /db_xref="CDD:250577"
     misc_feature    complement(500747..500941)
                     /locus_tag="CDBI1_02155"
                     /note="transposase, IS605 OrfB family, central region;
                     Region: tspaseT_teng_C; TIGR01766"
                     /db_xref="CDD:233563"
     gene            complement(501678..501845)
                     /locus_tag="CDBI1_02160"
                     /db_xref="GeneID:12216338"
     CDS             complement(501678..501845)
                     /locus_tag="CDBI1_02160"
                     /note="COG1943 Transposase and inactivated derivatives"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase-like protein A"
                     /protein_id="YP_006197598.1"
                     /db_xref="GI:384359746"
                     /db_xref="GeneID:12216338"
                     /translation="MEVTHGRGYAYSMSNTDIRIMGRHLWNPSYFVATVSENTEEQIR
                     KYINNQKKQVK"
     misc_feature    complement(501696..>501791)
                     /locus_tag="CDBI1_02160"
                     /note="Transposase IS200 like; Region: Y1_Tnp; cl00848"
                     /db_xref="CDD:242138"
     gene            complement(502413..502511)
                     /locus_tag="CDBI1_02165"
                     /db_xref="GeneID:12216339"
     CDS             complement(502413..502511)
                     /locus_tag="CDBI1_02165"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="YP_006197599.1"
                     /db_xref="GI:384359747"
                     /db_xref="GeneID:12216339"
                     /translation="MSELSKRDKEKIQRENEIIDKAEKLFCLNGFD"
     gene            502690..503295
                     /locus_tag="CDBI1_02170"
                     /db_xref="GeneID:12216340"
     CDS             502690..503295
                     /locus_tag="CDBI1_02170"
                     /note="'COG0491 Zn-dependent hydrolases, including
                     glyoxylases'"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="YP_006197600.1"
                     /db_xref="GI:384359748"
                     /db_xref="GeneID:12216340"
                     /translation="MKIKENVLMLDSTRGSNCFIVFDKEIILIDTGLPFMGKNIIKEL
                     KTLGIKLTDIKHILLTHHDVDHISNIKLLKEKTGAKVWAHVEDIPFIIGEKDRPGFKK
                     FIGKAISRRLIKDVEPYGENMKIGNIKIIHTPGHTPGHVCMIFEDVLFAGDLVKNKNG
                     NIVPYPNPWNWDYKKMMKSIRELDNLKYEWICMSHGTPCIK"
     misc_feature    502738..503274
                     /locus_tag="CDBI1_02170"
                     /note="Metallo-beta-lactamase superfamily; Region:
                     Lactamase_B; smart00849"
                     /db_xref="CDD:214854"
     gene            503799..504548
                     /locus_tag="CDBI1_02175"
                     /db_xref="GeneID:12216341"
     CDS             503799..504548
                     /locus_tag="CDBI1_02175"
                     /note="COG1737 Transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="RpiR family transcriptional regulator"
                     /protein_id="YP_006197601.1"
                     /db_xref="GI:384359749"
                     /db_xref="GeneID:12216341"
                     /translation="MRLESLVNQSYNSLNENDKIIIKQILICQREYRNFSCEKIANEC
                     NVSRATLLRLCRKIGLDSFSDLKYLLKNNQLEFVNNDNNFHDVCENYRLLMNELQKIS
                     FQDICKIIYDAETIYIYGTGNEQKSLAQEIKRIFLSVGKCVIDLFDIGEIEFMRESFQ
                     KSDLFIIISLSGETKSGIEIAKFINNHIHTISLTRLDNNTIATLCEYNLYVETQKLDT
                     LQAISYEVVGAFYALLDLLHMNYIEYRRRKE"
     misc_feature    503799..504542
                     /locus_tag="CDBI1_02175"
                     /note="Transcriptional regulators [Transcription]; Region:
                     RpiR; COG1737"
                     /db_xref="CDD:224651"
     misc_feature    503799..504011
                     /locus_tag="CDBI1_02175"
                     /note="Helix-turn-helix domain, rpiR family; Region:
                     HTH_6; pfam01418"
                     /db_xref="CDD:201784"
     misc_feature    504105..504509
                     /locus_tag="CDBI1_02175"
                     /note="RpiR-like protein. RpiR contains a SIS (Sugar
                     ISomerase) domain, which is found in many phosphosugar
                     isomerases and phosphosugar binding proteins. In E. coli,
                     rpiR negatively regulates the expression of rpiB gene.
                     Both rpiB and rpiA are ribose phosphate...; Region:
                     SIS_RpiR; cd05013"
                     /db_xref="CDD:240144"
     misc_feature    order(504171..504173,504303..504305)
                     /locus_tag="CDBI1_02175"
                     /note="putative active site [active]"
                     /db_xref="CDD:240144"
     gene            504545..505309
                     /locus_tag="CDBI1_02180"
                     /db_xref="GeneID:12216342"
     CDS             504545..505309
                     /locus_tag="CDBI1_02180"
                     /note="COG1737 Transcriptional regulators"
                     /codon_start=1
                     /transl_table=11
                     /product="RpiR family transcriptional regulator"
                     /protein_id="YP_006197602.1"
                     /db_xref="GI:384359750"
                     /db_xref="GeneID:12216342"
                     /translation="MKIEGLFNKYYNSFTANDKYICECILNHKEDCIKLSIDEFADKY
                     HISTSALSRFAQKLQLPGYSELRVIIRLNETEVEYKNQSKHQLMDCYNKVIDDIEKKD
                     CSIMFERMKKANRIIVFGEGYSQERVVKEMKRIFLPTGKIIYDVYGYDMIQALNHFIK
                     TDDMIFFISLNGDTSTIIDFAKEMRMKGTYMVSITKMISNPLARLCDENLYIQSISIS
                     VDKQLDYDVTTPYFILIELLYIKYKMYLESEHIPRK"
     misc_feature    504545..505306
                     /locus_tag="CDBI1_02180"
                     /note="Transcriptional regulators [Transcription]; Region:
                     RpiR; COG1737"
                     /db_xref="CDD:224651"
     misc_feature    504545..504748
                     /locus_tag="CDBI1_02180"
                     /note="Helix-turn-helix domain, rpiR family; Region:
                     HTH_6; pfam01418"
                     /db_xref="CDD:201784"
     misc_feature    504866..505267
                     /locus_tag="CDBI1_02180"
                     /note="RpiR-like protein. RpiR contains a SIS (Sugar
                     ISomerase) domain, which is found in many phosphosugar
                     isomerases and phosphosugar binding proteins. In E. coli,
                     rpiR negatively regulates the expression of rpiB gene.
                     Both rpiB and rpiA are ribose phosphate...; Region:
                     SIS_RpiR; cd05013"
                     /db_xref="CDD:240144"
     misc_feature    order(504914..504916,505049..505051)
                     /locus_tag="CDBI1_02180"
                     /note="putative active site [active]"
                     /db_xref="CDD:240144"
     gene            505414..506229
                     /locus_tag="CDBI1_02185"
                     /db_xref="GeneID:12216343"
     CDS             505414..506229
                     /locus_tag="CDBI1_02185"
                     /note="COG0561 Predicted hydrolases of the HAD
                     superfamily"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="YP_006197603.1"
                     /db_xref="GI:384359751"
                     /db_xref="GeneID:12216343"
                     /translation="MYKLLILDIDGTLRDEVYGIPESAKHAIRLCQKNHCSVVICTGR
                     SIGTIQDDVLSLGVDGYIAGGGNYIQYHGELLYNQSFNQRLIKEVVCLLKKREVAFSI
                     ESQEKVFMNQKAKEIFETMNQLKGTNSCINKQHIQEKITYENNIEEYKSQDVHKICLW
                     SNEKVFDEVKDILQDKMELAQRDISSQYYEIIQKDFHKGKAIKRLQERLGVTQKETIC
                     FGDGQNDIVMFQASDVTIAMKNSHQQLKDIATSICEDIFDNGIYKELKRRNII"
     misc_feature    505423..>505674
                     /locus_tag="CDBI1_02185"
                     /note="Haloacid dehalogenase-like hydrolases. The haloacid
                     dehalogenase-like (HAD) superfamily includes L-2-haloacid
                     dehalogenase, epoxide hydrolase, phosphoserine
                     phosphatase, phosphomannomutase, phosphoglycolate
                     phosphatase, P-type ATPase, and many others; Region:
                     HAD_like; cd01427"
                     /db_xref="CDD:119389"
     misc_feature    505426..506208
                     /locus_tag="CDBI1_02185"
                     /note="haloacid dehalogenase-like hydrolase; Region:
                     Hydrolase_3; pfam08282"
                     /db_xref="CDD:219777"
     misc_feature    order(505435..505443,505537..505542)
                     /locus_tag="CDBI1_02185"
                     /note="active site"
                     /db_xref="CDD:119389"
     misc_feature    505435..505452
                     /locus_tag="CDBI1_02185"
                     /note="motif I; other site"
                     /db_xref="CDD:119389"
     misc_feature    505537..505539
                     /locus_tag="CDBI1_02185"
                     /note="motif II; other site"
                     /db_xref="CDD:119389"
     misc_feature    <506002..506109
                     /locus_tag="CDBI1_02185"
                     /note="haloacid dehalogenase-like hydrolase; Region: HAD;
                     cl17202"
                     /db_xref="CDD:247756"
     gene            506243..507907
                     /locus_tag="CDBI1_02190"
                     /db_xref="GeneID:12216344"
     CDS             506243..507907
                     /locus_tag="CDBI1_02190"
                     /note="COG0366 Glycosidases"
                     /codon_start=1
                     /transl_table=11
                     /product="oligo-1,6-glucosidase"
                     /protein_id="YP_006197604.1"
                     /db_xref="GI:384359752"
                     /db_xref="GeneID:12216344"
                     /translation="MEKKWWQKEIVYQIYPRSFQDSNNDGIGDLQGIISRLDYLKDLG
                     ITSLWLCPIFKSPMDDNGYDISDYLDIASEFGSMEDLKELIKESKDRGIKIILDLVLN
                     HTSDEHPWFQEALKNPESPYHDYYIFKKGNDLPNNWRSVFGGSVWEKVENRDEYYFHS
                     FGKKQPDLNWENPILRSELYQMINTWSQMGVAGFRVDAITFIKKNLSFQSLESDGVDG
                     LVKCTKTVRNQPGIEKMLYELKENTFKKYDCMTVAEAAGISYDQLGDFIGEDGFFSMV
                     FDFKHADLDVASGSEWFKRISWTIPDLRKCILDSQMYVQEHGWAANFIENHDQPRATT
                     KYLLQYERNDDAVKMLGAMYFFLRGTPFIYQGQELGMTNFKRDTINDFNDLSSIDQYY
                     RSIDEGYSEEEALEFVNLRSRDNARTPFPWADKENAGFSDATPWLKVIENYKDINAQS
                     QINNSESILEFYKKMIKLRQDSKYSDCLIYGSIEPIDIESDNVIAYRRQLDLVVIDCY
                     YNFSDKLVEIKTEEKYDIVFQNLDDINLLNKTVSLKPFQAVLLKVR"
     misc_feature    506255..507898
                     /locus_tag="CDBI1_02190"
                     /note="alpha,alpha-phosphotrehalase; Region:
                     trehalose_treC; TIGR02403"
                     /db_xref="CDD:233851"
     misc_feature    506261..507655
                     /locus_tag="CDBI1_02190"
                     /note="Alpha amylase catalytic domain found in Sucrose
                     isomerases, oligo-1,6-glucosidase (also called isomaltase;
                     sucrase-isomaltase; alpha-limit dextrinase), dextran
                     glucosidase (also called glucan 1,6-alpha-glucosidase),
                     and related proteins; Region: AmyAc_SI_OligoGlu_DGase;
                     cd11333"
                     /db_xref="CDD:200472"
     misc_feature    order(506303..506305,506309..506311,506315..506317,
                     506327..506329)
                     /locus_tag="CDBI1_02190"
                     /note="Ca binding site [ion binding]; other site"
                     /db_xref="CDD:200472"
     misc_feature    order(506420..506422,506429..506431,506540..506542,
                     506549..506551,506666..506668,506723..506725,
                     506735..506737,506831..506833,507002..507004,
                     507479..507481)
                     /locus_tag="CDBI1_02190"
                     /note="active site"
                     /db_xref="CDD:200472"
     misc_feature    order(506831..506833,507002..507004,507224..507226)
                     /locus_tag="CDBI1_02190"
                     /note="catalytic site [active]"
                     /db_xref="CDD:200472"
     gene            507912..509786
                     /locus_tag="CDBI1_02195"
                     /db_xref="GeneID:12216345"
     CDS             507912..509786
                     /locus_tag="CDBI1_02195"
                     /note="COG1264 Phosphotransferase system IIB components"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system transporter subunit IIABC"
                     /protein_id="YP_006197605.1"
                     /db_xref="GI:384359753"
                     /db_xref="GeneID:12216345"
                     /translation="MNKYNKIANELIEIIGENNIISITHCATRLRVMVKDREIINDKK
                     VEKVNEVKGVFFTSGQYQIILGTGIVNKVYAEVEKMGLKTLSKKEQDELVKNNETGFK
                     KVMRTLADIFVPIIPVIAATGLFLGLKGCLFNDNVLGLFGMSSANIPLYIQTLVSVLT
                     ETAFAFLPAIIVWSAFKVFGGTPVIGLVIGLMLVSPILPNAYSVADPSNEVEAIMAFG
                     FIPIVGCQGSVLTAIVTAFIGANLEKWFRKHMPNVLDLIFTPFFVMLITMLVILLGVG
                     PIMHTIELKMVDIISLLIGLPLGIGGFIIGFTYPLAVITGLHHTYVMIETSLLANTGF
                     NALITLCAMYGFANIGTCLAFMKKSKNNQVKQTAVGAMLSQLFGISEPVLFGIQLRYN
                     LKPLIIMCASSGLGAAILSILHIQSNSYGLAVLPSYLMYIYDGYNLITYLLVSIFVVA
                     FCFIVTCLFGVPKEAINEDEDEELVFNENNENFVSPAKGKIVALENVPDETFSKKMLG
                     DGFAIDIIDGKIVSPISGKLETVFSSGHAFGIKGTNGEVLIHVGIDTVALNGDGFDIA
                     VKQGDMVKQGDVLVNVDLKRIHELGKSTLTMVLFPDGKKVNILDINKDVKIGQRICVE
                     "
     misc_feature    507981..509288
                     /locus_tag="CDBI1_02195"
                     /note="PTS system, sucrose-specific IIBC component;
                     Region: PTS-II-BC-sucr; TIGR01996"
                     /db_xref="CDD:131051"
     misc_feature    <507981..508154
                     /locus_tag="CDBI1_02195"
                     /note="PTS_IIB, PTS system, glucose/sucrose specific IIB
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This family...; Region:
                     PTS_IIB_glc; cl00164"
                     /db_xref="CDD:241652"
     misc_feature    507984..508004
                     /locus_tag="CDBI1_02195"
                     /note="active site turn [active]"
                     /db_xref="CDD:238130"
     misc_feature    507987..507989
                     /locus_tag="CDBI1_02195"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238130"
     misc_feature    508194..509288
                     /locus_tag="CDBI1_02195"
                     /note="Phosphotransferase system IIC components,
                     glucose/maltose/N-acetylglucosamine-specific [Carbohydrate
                     transport and metabolism]; Region: PtsG; COG1263"
                     /db_xref="CDD:224183"
     misc_feature    509364..509783
                     /locus_tag="CDBI1_02195"
                     /note="Phosphotransferase system IIA components
                     [Carbohydrate transport and metabolism]; Region: NagE;
                     COG2190"
                     /db_xref="CDD:225101"
     misc_feature    order(509406..509417,509427..509432,509496..509501,
                     509505..509510,509526..509534,509547..509555,
                     509559..509561,509571..509573,509577..509582,
                     509616..509618)
                     /locus_tag="CDBI1_02195"
                     /note="HPr interaction site; other site"
                     /db_xref="CDD:238128"
     misc_feature    order(509406..509408,509412..509417,509421..509423,
                     509427..509432,509499..509501,509505..509507,
                     509517..509519,509553..509555,509559..509561,
                     509571..509573,509577..509582,509586..509588)
                     /locus_tag="CDBI1_02195"
                     /note="glycerol kinase (GK) interaction site [polypeptide
                     binding]; other site"