LOCUS NC_017392 35901 bp DNA circular CON 24-DEC-2022
DEFINITION Erwinia pyrifoliae DSM 12163 plasmid pEP36, complete sequence.
ACCESSION NC_017392
VERSION NC_017392.1
DBLINK BioProject: PRJNA224116
BioSample: SAMEA2272353
Assembly: GCF_000026985.1
KEYWORDS RefSeq; complete genome.
SOURCE Erwinia pyrifoliae DSM 12163
ORGANISM Erwinia pyrifoliae DSM 12163
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
Erwiniaceae; Erwinia.
REFERENCE 1
AUTHORS Smits,T.H., Jaenicke,S., Rezzonico,F., Kamber,T., Goesmann,A.,
Frey,J.E. and Duffy,B.
TITLE Complete genome sequence of the fire blight pathogen Erwinia
pyrifoliae DSM 12163T and comparative genomic insights into plant
pathogenicity
JOURNAL BMC Genomics 11, 2 (2010)
PUBMED 20047678
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 35901)
AUTHORS Jaenicke,S.
TITLE Direct Submission
JOURNAL Submitted (06-MAY-2009) Jaenicke S., Universitaet Bielefeld,
CeBiTec, 33594 Bielefeld, N/A, GERMANY
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
FN392238.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 12/24/2022 01:58:14
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.4
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 3,787
CDSs (total) :: 3,677
Genes (coding) :: 3,512
CDSs (with protein) :: 3,512
Genes (RNA) :: 110
rRNAs :: 8, 7, 7 (5S, 16S, 23S)
complete rRNAs :: 8, 7, 7 (5S, 16S, 23S)
tRNAs :: 75
ncRNAs :: 13
Pseudo Genes (total) :: 165
CDSs (without protein) :: 165
Pseudo Genes (ambiguous residues) :: 1 of 165
Pseudo Genes (frameshifted) :: 94 of 165
Pseudo Genes (incomplete) :: 107 of 165
Pseudo Genes (internal stop) :: 37 of 165
Pseudo Genes (multiple problems) :: 58 of 165
CRISPR Arrays :: 4
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..35901
/organism="Erwinia pyrifoliae DSM 12163"
/mol_type="genomic DNA"
/strain="DSM 12163"
/culture_collection="DSM:12163"
/type_material="type strain of Erwinia pyrifoliae"
/db_xref="taxon:644651"
/plasmid="pEP36"
gene 13..984
/locus_tag="EPYR_RS18435"
/old_locus_tag="EPYR_03987"
CDS 13..984
/locus_tag="EPYR_RS18435"
/old_locus_tag="EPYR_03987"
/function="Protein involved in initiation of plasmid
replication [DNA replication, recombination, and repair]."
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013577992.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="replication initiation protein"
/protein_id="WP_014539989.1"
/translation="MELNKLTVVQGNDLLEGAYSVTLDEMRLLNLALAQIDSRKPQPD
ALYRLFPHDYQRIYGLNPTSCHRQLREAAESLMKKPVTIYQPDRKSGKTRTVQLSWFS
RLEYVSSDEQSAVILRFGQDVAPYLYELKESFTKLNFTNIAKLDTPFSVRLYGWLIKA
KNLYGRKISEAIEVTLALDWMREKAGLQGKYEDYRDFRQKLLEPTLARINANTDISVI
WHPVKKGRTVVSIRFSYVDESTPEASKPLRPKFPRRPRAAAGSELEGEWARRCIAIME
QYRDCLATYDRTEKVPLTDVRKLAGWYKIIGDKTACKRVMNEVNARD"
gene 1270..1611
/locus_tag="EPYR_RS20120"
/old_locus_tag="EPYR_03988"
CDS 1270..1611
/locus_tag="EPYR_RS20120"
/old_locus_tag="EPYR_03988"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="WP_014539990.1"
/translation="MPLLLAADICRSIGVSREQLRLRIRWCSDSFAFRGDNGEKLRVT
FAQDCCDRVNGQRLPVVMIKRRCRMAVQNLVMAFSDYNVHYSHSALVIMLATRIDTQE
IIAHRQERKSV"
gene complement(<1642..>1789)
/locus_tag="EPYR_RS20530"
/pseudo
CDS complement(<1642..>1789)
/locus_tag="EPYR_RS20530"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611500.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus and C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene 1862..3073
/locus_tag="EPYR_RS18445"
/old_locus_tag="EPYR_03989"
CDS 1862..3073
/locus_tag="EPYR_RS18445"
/old_locus_tag="EPYR_03989"
/function="Transposase and inactivated derivatives"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000343613.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS256 family transposase"
/protein_id="WP_014539991.1"
/translation="MDEKKLKALAAELAKGLKTEAXLNAFSRMLTKLTVETALNAELT
EHPGHEKNAPKAGSNTRNGYSSKTVLCDDGEIELSTPRDRENTXQPQLIKKSQTRITQ
MDSQILSLYAKGMTTREIVAATFREMYDADVSPTLISKVTDAVKEQVAEWQTRPLDAL
YPIVYLDCIVVKVRHGGSVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTE
LKXRGLQDILIACVDGLKGFPDAINSVYPQTNIQLCIIHMVRNSLKYVSWKDYKAVTG
GLKXVYQAPTEEAALMALDKFAGIWDEKYPQISKSWRAHWENINTFFGYPADIRKAIY
TTNAIESLNSVIRAAIKKRKVFPTDDSVRKVIYLAIXDASKKWNMPIQNWRLAISRFI
IEFGDRLSDHX"
gene complement(<3170..3598)
/locus_tag="EPYR_RS21285"
/pseudo
CDS complement(<3170..3598)
/locus_tag="EPYR_RS21285"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539895.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - transposition, DNA-mediated
[Evidence IEA]"
/note="frameshifted; internal stop; incomplete; partial in
the middle of a contig; missing C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(4254..4658)
/locus_tag="EPYR_RS18455"
/old_locus_tag="EPYR_03991"
CDS complement(4254..4658)
/locus_tag="EPYR_RS18455"
/old_locus_tag="EPYR_03991"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011113994.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006355 - regulation of DNA-templated
transcription [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="H-NS family nucleoid-associated regulatory
protein"
/protein_id="WP_011113994.1"
/translation="MSETLKVLNNIRTLRAQAREVSLSELEEMLEKLEAVVNERRDAE
AAIASEIKEKEEKLAKYRQMLLEDGIDLSELTSAENTSGKPRAKRAPRPAKYEYTDEN
GEQKSWTGQGRTPAVIKQALDAGKKLEDFLIK"
gene complement(5441..6379)
/gene="epo"
/locus_tag="EPYR_RS18460"
/old_locus_tag="EPYR_03992"
CDS complement(5441..6379)
/gene="epo"
/locus_tag="EPYR_RS18460"
/old_locus_tag="EPYR_03992"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012814643.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="omptin family outer membrane protease Epo"
/protein_id="WP_012814643.1"
/translation="MKKSTVLVTMMSAFFGTDYVAAAQISPDFSADSISVATSAGILG
GKSKELVYDASNARKISQLDWKIKNVAIIKADFSWDAYSFLTLNARGWTSLASGSGHM
DDYDWQNSNQSDWTDHSSHPGTDVNYANEYDLNLKGWFLQGSDYKVGAVAGYQETRFS
WTATGGSYSYNNGASVGNFPNQRPGIGYSQRFSMPYIGLVGQYRINDFEFNALFKFSD
WVRAHDNDEHYMRSLTFREKTSDSRYYGASVDAGYYVTRNAKVFAEFSYSKYEEGKGG
TQIIDTISGDSASLDGDAAGISNKNYTATVGVQYRF"
gene complement(6588..7445)
/locus_tag="EPYR_RS18465"
/old_locus_tag="EPYR_03993"
CDS complement(6588..7445)
/locus_tag="EPYR_RS18465"
/old_locus_tag="EPYR_03993"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012814642.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="LysR family transcriptional regulator"
/protein_id="WP_012814642.1"
/translation="MDLTQLEIFCAIAEQGSVTAAAEKLHRVPSNISTRLKQLEEELG
CALFRREKLRLHITDSGRTFLAYSRRILALSEEAKQSVSGQRPDGVFTLGAIESTAAV
RLPPLIARYHQRWPQVGLDLSTGPSGDMIDGVLAGRYSAAFVDGPPKHPQLEGIPVFA
EDLVLIGALNHPPVYDASGISGSTIYAFRANCSYRRLFENWFARTHAVPGKIFEMESY
HGILACVSAGAGLALIPASMLESMPGRDSVNAWSLSEGMGQIAIWLVWRKGTRSANLQ
AMKALLTED"
gene 7586..8974
/locus_tag="EPYR_RS18470"
/old_locus_tag="EPYR_03994"
CDS 7586..8974
/locus_tag="EPYR_RS18470"
/old_locus_tag="EPYR_03994"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012440525.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="NAD-dependent succinate-semialdehyde
dehydrogenase"
/protein_id="WP_041473957.1"
/translation="MMKNVSSAVAVSRNPATGEVFARYPFATIAEVDSALALTNGAFQ
YWRHSAMSDRVQLLCNVADALRQQARELAEMMTSEMGKPVDQGLAEVEKSARLCEWYA
GHGPAFLQREPTLVEGNKAFVDYLPLGPVLSVMPWNFPVWQVLRGAVPILLAGNSYLL
KPAPNVMGCALLLQQILTRVGVPEGLFAVVNADNDGVAQAINDRRIAAVTVTGSVRAG
AAIAALSGAAIKKCVLELGGSDAFIVLADADIDAAVKGAIAGRFMNNGQLCISAKRII
VEAPVFDAFRDKFVSAVKEMKIGDPRESGTWIGPMARYDLRDELDSQVQATLKEGATL
LLGGHVLPGEGNYYAPTVLSDVKPGMTSFAQELFGPVASLIQADNAEHAVAMANDSEF
GLGGSMWSRDLAVAQKLASRIETGGVFINSPSFSDPRVPIGGVKKSGFGRELSHFGLR
EFTNTQTVWMEE"
gene complement(9274..10831)
/locus_tag="EPYR_RS21375"
/pseudo
CDS complement(9274..10831)
/locus_tag="EPYR_RS21375"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009351645.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/GO_process="GO:0007165 - signal transduction [Evidence
IEA]"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="methyl-accepting chemotaxis protein"
gene complement(11339..11752)
/locus_tag="EPYR_RS18480"
/old_locus_tag="EPYR_03997"
CDS complement(11339..11752)
/locus_tag="EPYR_RS18480"
/old_locus_tag="EPYR_03997"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011113999.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
/protein_id="WP_011113999.1"
/translation="MLVADIIKAGEALTAVAPFLAGITDKRQHAEALEFVEHLLLNDP
ENPLLDLVCAKITAYEDTAPEFAEFNAQLAAMPAGVAMIRLLLDQHDLTLSDLPEIGS
KSMVSRVLNGERKLTLEHAKKLATRFAISPALFID"
gene complement(11754..12068)
/locus_tag="EPYR_RS18485"
/old_locus_tag="EPYR_03998"
CDS complement(11754..12068)
/locus_tag="EPYR_RS18485"
/old_locus_tag="EPYR_03998"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000550192.1"
/GO_function="GO:0016788 - hydrolase activity, acting on
ester bonds [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system HigB family
toxin"
/protein_id="WP_041473956.1"
/translation="MHLISRSMIKDATDKYPQHSRELLALMIAIEKGYFKAPEALKAA
FPSLDNLKYLDKHYVINIGRNDLRLVALVFFESQKFYVRHVFTHKEYDVFTALHRTKG
KK"
gene complement(12332..12616)
/locus_tag="EPYR_RS18490"
/old_locus_tag="EPYR_03999"
CDS complement(12332..12616)
/locus_tag="EPYR_RS18490"
/old_locus_tag="EPYR_03999"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013036332.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="VF530 family DNA-binding protein"
/protein_id="WP_011078079.1"
/translation="MANHSSKDPLHGVTLEALLNMLVARFGWEQLAKRININCFKSDP
SIKSSLKFLRRTPWARKEVEDLYIASLKDDHSAKPEMPTDNPWNSRQRKS"
gene complement(12776..13063)
/locus_tag="EPYR_RS18495"
/old_locus_tag="EPYR_04000"
CDS complement(12776..13063)
/locus_tag="EPYR_RS18495"
/old_locus_tag="EPYR_04000"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001742148.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system RelE/ParE family
toxin"
/protein_id="WP_011078058.1"
/translation="MTYKLKFVPSAEKEWKRLGHPVREQFKKKLAERLENPRVPSAQL
HGRKDQYKIKLKSAGYRLVYLVQEHTITIMVMGIGKREGNQIYSDTENRLP"
gene complement(13053..13307)
/locus_tag="EPYR_RS18500"
/old_locus_tag="EPYR_04001"
CDS complement(13053..13307)
/locus_tag="EPYR_RS18500"
/old_locus_tag="EPYR_04001"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000885425.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid stabilization protein"
/protein_id="WP_011078059.1"
/translation="MAFNILTNTAASITDLKRDPMGTVRAAEGETIAILNRNEPAFYC
VPPAMYAYLMELAEDAELGCIVDDRMSELPVAKEISLDDL"
gene complement(13518..14483)
/locus_tag="EPYR_RS18505"
/old_locus_tag="EPYR_04002"
CDS complement(13518..14483)
/locus_tag="EPYR_RS18505"
/old_locus_tag="EPYR_04002"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011078060.1"
/GO_function="GO:0008641 - ubiquitin-like modifier
activating enzyme activity [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ThiF family adenylyltransferase"
/protein_id="WP_011078060.1"
/translation="MSRYQRQSMLPEIGESGQRRLAQARVLVIGAGGLGSALLPLLAA
AGVGYLRLYDGDRVEEHNLHRQTLYGMQDIGEEKVFCARRALATRNPECVVDARPHAL
TASATEVALAGIDLAIDAADNFALTYPLSDACLAQRIPLVSASVLGRRGYVGGFCGGA
PSYRALFPRLPDSAANCNTAGVMGPAVATLGAMQAQMALSILLNFSPSPLGCLVNCDF
AQWHFRQLRFDSATEPDHPPVPFIDRHLLTPEDCIVELRSVNEAPESVADAVQRVLPQ
QLSGWQPPAERRIVLVCASGIRAAKAAMALELRGFSHLAIIAAGR"
gene complement(14499..15257)
/locus_tag="EPYR_RS18510"
/old_locus_tag="EPYR_04003"
CDS complement(14499..15257)
/locus_tag="EPYR_RS18510"
/old_locus_tag="EPYR_04003"
/EC_number="2.8.1.10"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009093096.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="thiazole synthase"
/protein_id="WP_012814638.1"
/translation="MFYDFVPQSRFLLGTAGYPSPQILQQAVMASESEIITVSLRREG
SQGGAFRELLTQLNKRILPNTAGCHTVKEAVTTAHMARELFNTRWIKLEVIGHADTLQ
PDPFALVEAARILCADGFQVFPYTTEDLILGEKLLEAGCELLMPWGAPIGSGQGLRNI
EGLRSMRLWFKDIPLIIDAGIGAPSQAAQAMEMGFDGILLNTAVARAQDPLRMAQAFA
AAVRAGYDAHGAGLIERRDMATASTPIFGMAQFS"
gene complement(15261..15458)
/gene="thiS"
/locus_tag="EPYR_RS18515"
/old_locus_tag="EPYR_04004"
CDS complement(15261..15458)
/gene="thiS"
/locus_tag="EPYR_RS18515"
/old_locus_tag="EPYR_04004"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014598218.1"
/GO_function="GO:0003824 - catalytic activity [Evidence
IEA]"
/GO_process="GO:0009228 - thiamine biosynthetic process
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="sulfur carrier protein ThiS"
/protein_id="WP_012814637.1"
/translation="MKIQLNGSAIDTHARTLTELLRERQIDAGCIASAVNGQFVPRSQ
YDAQPLTEGCELEVLAPMQGG"
gene complement(15455..16387)
/locus_tag="EPYR_RS18520"
/old_locus_tag="EPYR_04005"
CDS complement(15455..16387)
/locus_tag="EPYR_RS18520"
/old_locus_tag="EPYR_04005"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012440519.1"
/GO_function="GO:0016491 - oxidoreductase activity
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="FAD-dependent oxidoreductase"
/protein_id="WP_041473952.1"
/translation="MSRWSVIGDGVTGLCVATLLAGRGESLEVITDAHHQPASHLAGG
MLAPWCEGESAPSEVVELGQRSSPWWSAHVDGVEHRGTLVVAPPRDAPELTRFARMTH
AHRWVKPDTLEPDLAGRFARGLFFAGEAHLDPRRAMQQLREKLQRSGICFHQGKPAGR
VIDCRGIHAADELPGLRAVRGEMLLLHCDDVQFSRPVRLLHPRFPCYLVPRTEGRFML
GATMMESHDSSPISARAMMELLSAAYSIHPALAEARILESGTGLRPAWPDHIPEIRHR
NGIWYLNGMYRHGFLLAPVMAEKLMQQLTEENLI"
regulatory complement(16531..16650)
/regulatory_class="riboswitch"
/inference="COORDINATES: nucleotide
motif:Rfam:14.4:RF00059"
/inference="COORDINATES: profile:INFERNAL:1.1.1"
/note="TPP riboswitch; Derived by automated computational
analysis using gene prediction method: cmsearch."
/bound_moiety="thiamine pyrophosphate"
/db_xref="RFAM:RF00059"
gene complement(16763..>16924)
/locus_tag="EPYR_RS19870"
/pseudo
CDS complement(16763..>16924)
/locus_tag="EPYR_RS19870"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000767836.1"
/GO_process="GO:0008219 - cell death [Evidence IEA]"
/note="internal stop; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="Txe/YoeB family addiction module toxin"
gene 17104..17688
/locus_tag="EPYR_RS18525"
/old_locus_tag="EPYR_04006"
CDS 17104..17688
/locus_tag="EPYR_RS18525"
/old_locus_tag="EPYR_04006"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011114004.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_012814636.1"
/translation="MSRVFAYCRVSTLEQTTENQCREIEAAGFSVKPQRLIEEHISGS
VAASERPGFIRLIDRMEDGDVLIVTKLDRLGRNAIDIRKTVELLADSDIRVHCLALGG
VDLTSPAGKMTMQVISAVAEFERDLLLERTHSGIARAKASGKRFGRPPTLNDDQKQSV
LARLSTGMSVSAVAREFNTTRQTILRVRAASLMG"
gene 18015..18725
/locus_tag="EPYR_RS18530"
/old_locus_tag="EPYR_04007"
CDS 18015..18725
/locus_tag="EPYR_RS18530"
/old_locus_tag="EPYR_04007"
/EC_number="2.1.-.-"
/function="SAM-dependent methyltransferases"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009351670.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="class I SAM-dependent methyltransferase"
/protein_id="WP_014540001.1"
/translation="MDIRSEKGASIYTPLILKLYDTWVLNISNNYAWRCNTDNILLPH
FKQNMAKSHLDIGVGTGYYLANARQSSDAITLLDLNSNSLAAAKKRIGAHRIKHVLQH
DIFTPLPEREKNKYDSVSMYYLLHCLQGNIKEKASAIENASQALTEKGTLHGATILGS
GVEHNAFGRYLMKVYNKKGIFSNNFDSLNDLKNVLDHYFDQVNIQQHGVVAVFTAAGK
KIVPDSSFLPVSGRRDLG"
gene complement(19060..21090)
/locus_tag="EPYR_RS18535"
/old_locus_tag="EPYR_04008"
CDS complement(19060..21090)
/locus_tag="EPYR_RS18535"
/old_locus_tag="EPYR_04008"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011114006.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="choline transporter"
/protein_id="WP_011114006.1"
/translation="MPATEIPEKHQKDRINPVVFYTSAVLILLFSLTTILFTDFSDRW
INRTLNWVSNTFGWYYLLAATLYIVFVIFMACSRFGSIKLGPEQSKPEFSLMSWAAML
FAAGIGIDLMFFSVAEPVTQYMMPPEGQGQTLAAARQAMVWTLFHYGLTGWSMYALMG
IALGYFSYRYGLPLTIRSALYPIFGKRVNGPIGHTVDIAAVLGTIFGIATTLGIGVVQ
LNYGLKVLFDVPEGLTAQAGLIVLSVIMATISVTSGVNKGIRFLSELNVLLAFGLILF
VLFVGDTSFLLNALVLNVGDYINRFMGMTLDSFAFDRPTEWMNNWTLFFWAWWVAWSP
FVGLFLARISRGRTIRQFVLGTLTIPFIFTLLWLSIFGNSALNEIIHGNLALAQETLA
HPERGFYSLLAQYPGFTFSASVATITGLLFYVTSADSGSLVLGNFTSRLADINNDAPN
WLRIFWSVTIGVLTMGMLMVNGVTALQKTTVIMGLPFSFVIFFVMAGLYKSLRVEDHR
RASATVNTPPVTVDRLNWKQRISRVMNYPGTTHTRKMLDNVCRPAMEEVGRELERRGA
KVQVNELPAVEDERLNHLELLVDLADEQSFLYQIWPQRYSVPAFTYRARSGKSDYFRL
ETFLLEGTQGNDLMDYTKEQIINDILDQYERHLTFLHIHREAPGNSMPFPEV"
gene 21503..>21672
/locus_tag="EPYR_RS20905"
/pseudo
CDS 21503..>21672
/locus_tag="EPYR_RS20905"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009351674.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="Rpn family recombination-promoting
nuclease/putative transposase"
gene complement(22728..23525)
/locus_tag="EPYR_RS18540"
/old_locus_tag="EPYR_04010"
CDS complement(22728..23525)
/locus_tag="EPYR_RS18540"
/old_locus_tag="EPYR_04010"
/function="ABC-type metal ion transport system,periplasmic
component/surface antigen"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_005120221.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="MetQ/NlpA family ABC transporter
substrate-binding protein"
/protein_id="WP_014540004.1"
/translation="MLLAAATLGALNLSAWADTLTVGASNVPHAEILEQAKPILAKQG
IDLEIKSFQDYILPNTALASHDIDANYFQHVPYLNSVLKDHAGDQNYDFVSAGAIHIE
QIGIYPKNYRSLKDLPENGKVIMRDAVAEEGRILSIFEQQGVIKIKPGISKVDARISD
IVENPKHLKFFANVEGALLPQMYNNDEGDAVVINANYAIDAGLDPVKGPIAVESGENN
PYANIITVHHGDEKKPDIKALVSVLHSTVIQDWIRTKYKGAVIPVNN"
gene complement(23561..24230)
/locus_tag="EPYR_RS18545"
/old_locus_tag="EPYR_04012"
/pseudo
CDS complement(23561..24230)
/locus_tag="EPYR_RS18545"
/old_locus_tag="EPYR_04012"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_005120223.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
gene complement(24223..25204)
/locus_tag="EPYR_RS18550"
/old_locus_tag="EPYR_04013"
/pseudo
CDS complement(24223..25204)
/locus_tag="EPYR_RS18550"
/old_locus_tag="EPYR_04013"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011078067.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="methionine ABC transporter ATP-binding protein"
gene complement(25218..28214)
/locus_tag="EPYR_RS18555"
/old_locus_tag="EPYR_04015"
CDS complement(25218..28214)
/locus_tag="EPYR_RS18555"
/old_locus_tag="EPYR_04015"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012814634.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Tn3 family transposase"
/protein_id="WP_012814634.1"
/translation="MSVDFLTDSQIQSYGCYAAEPNEVQLARYFHLDERDLAFVNQRR
GRHNRLGIALQLTTARFLGTFLHDLMQIPDGVRFYVAAQLGIPRPEILSRYAQRDNTR
WEHHALIRQHYGYHDFGDFPWTFRLKRLLYVRVWLSNERPGLMFDFATAWLLQYKVLL
PAASTLTRIIGEIRERANRRLWRKLASLPDSWQTAQLASLLEVPEGQRVSVMEQLRKG
PVAVSGPSFTEALERYTRLRNLEFSRLNFSGLPAIQLRNLARYAGMTSAKYIARMPEV
RRLAVLTAFVKAQEISALDDAVDVLDMLILDIAREAKKTGQKKRLRTLKDLDRAALLL
ARACALLLDENTDESTLRKTIFKSVPVARLAESVDKVNELARPQDTNFQDEMVEQYGR
VKRFLPALLRDLHFSSAPDGEHTLAAIHYLAELIGSKKRILDDAPERIITGPWKRLVY
DAEGRIQRAGYSLCLLERLQDALRRRDIWLENSERWGDPRQKLLQGKEWQVQRVAVCR
ALGRPTDGRKATEQMANQRDETWKAVSARFHRNDAVGMCHEGKYPSLTISSLEKLSEP
PALTQLSSRVKQLLPPVDLTELLLEIDARTGFTREFTHVSESEARAKDLNVSLCAVLL
AEACNIGHEPLIKHNIPALTRHRLSWVKQNYLRAETLVSANARLVDFQSTLELASHWG
GGEVASADGMRFVTPVKTVNSGPNRKYFGSGRGITWYNFVSDQYSGFHGIVIPGTLRD
SIFVLEGLLEQQTGLNPVEIMTDTAGASDIIFGLFWLLGYQFSPRLADAGEAVFWRID
KNAHYGALDELARGCVALPKIESHWDEIMRASGSLKLGTIHASELIRSLLRSTRPSGL
AQAIMEVGRVNKTLYLLNYIDDEDYRRRILTQLNRGEGRHAVARAICYGQRGEIRKRY
REGQEGQLGALGLVTNAVVLWNSLYMQEALSHLRSTGETPEDEHIARLSPLMHGHINM
LGHYTFTLPEDILKGELRSLNFNLNN"
gene 28375..28956
/locus_tag="EPYR_RS18560"
/old_locus_tag="EPYR_04016"
CDS 28375..28956
/locus_tag="EPYR_RS18560"
/old_locus_tag="EPYR_04016"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012814633.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_012814633.1"
/translation="MALLGYARVSTSHQKLTLQVAELKNGGVREDRIFTDMMTGATDE
REGLQRLLGRAEKDDIIICTKMDRLGRNTADMIHIVDACYKKGIAIRFLENGLSTEGT
MGKMVIQILAAVAEAERERILERTNDGRVAAMASGVRFGRKPHPATASALTLIRQGVS
FKVVSEKTGISRPTYFRLKRRFTAENKGVSSAM"
gene 28975..>29164
/locus_tag="EPYR_RS21300"
/pseudo
CDS 28975..>29164
/locus_tag="EPYR_RS21300"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_016189492.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene complement(29194..29859)
/locus_tag="EPYR_RS21305"
/old_locus_tag="EPYR_04018"
CDS complement(29194..29859)
/locus_tag="EPYR_RS21305"
/old_locus_tag="EPYR_04018"
/function="Transposase and inactivated derivatives"
/inference="COORDINATES: protein motif:HMM:NF033516.0"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
/protein_id="WP_014538726.1"
/translation="MAHLVLLTSCRSTTSKTIAASLRRQGLRAKAARKFSPVSYREHG
LPVSENLLKQDFYASGANQKWAGDITYLRTDEGWLYLAVVIDLWSRSVIGWSMSPRMT
AQLACDALQMALWRRKRPEKVIVHTDRGGQYCSSDYQSLLKCHNLRGSMSAKGCCYDN
ACVESFFHSLKVECIHGERFASREIMRTTVFNYIECDYNRWRRHSACGGLSPEQFENQ
NLA"
gene complement(30046..30345)
/locus_tag="EPYR_RS21310"
/old_locus_tag="EPYR_04019"
CDS complement(30046..30345)
/locus_tag="EPYR_RS21310"
/old_locus_tag="EPYR_04019"
/inference="COORDINATES: protein motif:HMM:NF013677.2"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - transposition, DNA-mediated
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="WP_011078074.1"
/translation="MTKPASTSKKPRKQHTPEFRNEALKLAERIGVAPAARELRLYES
QLYAWRSKLKNAHSSSEREQEMSVEIARLKRQLAEQAEELAILQKAATYFAKRLK"
gene 30394..31044
/locus_tag="EPYR_RS18575"
/old_locus_tag="EPYR_04020"
CDS 30394..31044
/locus_tag="EPYR_RS18575"
/old_locus_tag="EPYR_04020"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_008926344.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF4225 domain-containing protein"
/protein_id="WP_071846828.1"
/translation="MAGRIXFAAARHAKSDEECIACIKNLRVETENLEEQGRMLRMKT
AKLYAKVEFVRENNKIVGYVISAVNVVLSGVEIAVGLTLIGSMTPLGVLAGAVLVTDG
ANGISKEIAHYAMDNKTSEGLVADAAMSTAEFMGFSRNSGLGIYKSVSLAANAYSIFG
LFRRPGTWRLFRYLPADYYRKVSTMSRPKLTMKIVGYGVKAKVIFDLMSVTDAVQN"
gene complement(31022..31351)
/locus_tag="EPYR_RS18580"
CDS complement(31022..31351)
/locus_tag="EPYR_RS18580"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003852044.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_041473955.1"
/translation="MKVSDAALLKSGFSHADLQKLKNNIANYGGSLDSVTHDLANRFN
ASKWITIAAFTILALTLILASVDTSITLAATLAIVLPFIWYLTPAKLAYKSWRYRRLT
TNSEPRQ"
gene 32519..33055
/gene="msrA"
/locus_tag="EPYR_RS18585"
/old_locus_tag="EPYR_04022"
CDS 32519..33055
/gene="msrA"
/locus_tag="EPYR_RS18585"
/old_locus_tag="EPYR_04022"
/EC_number="1.8.4.11"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012814649.1"
/GO_function="GO:0008113 - peptide-methionine (S)-S-oxide
reductase activity [Evidence IEA]"
/GO_function="GO:0033744 -
L-methionine:thioredoxin-disulfide S-oxidoreductase
activity [Evidence IEA]"
/GO_process="GO:0006979 - response to oxidative stress
[Evidence IEA]"
/GO_process="GO:0030091 - protein repair [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="peptide-methionine (S)-S-oxide reductase MsrA"
/protein_id="WP_012814649.1"
/translation="MATEYAIIAGGCFWCTEAVFKQINGVESVESGYIGGHTENPTYK
QVCHGDTGHAEAIRIGFDPEKVSFGDLLDISFATHDPTQLNRQGNDIGTQYRSAIFPT
GAQQAEEAKAAISRAQSEHSDPIVTSIEADAVWYPAEDYHQDYWAGEGQENRYCLAVI
PPKLQKLRKRFAAYAVSK"
gene 33159..>33401
/locus_tag="EPYR_RS18590"
/old_locus_tag="EPYR_04023"
/pseudo
CDS 33159..>33401
/locus_tag="EPYR_RS18590"
/old_locus_tag="EPYR_04023"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014543172.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
gene 33844..34458
/locus_tag="EPYR_RS18595"
/old_locus_tag="EPYR_04024"
CDS 33844..34458
/locus_tag="EPYR_RS18595"
/old_locus_tag="EPYR_04024"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000864788.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ParA family partition ATPase"
/protein_id="WP_071846829.1"
/translation="MISFLNGKGGVGKTTTSINIATSLARKGHKVAMVDTDPQGSISN
WYDESKCQFDLTEASSEKEVYTVRKYLNDYDYVVIDGAAAITAISSAAVMVSDLVLIP
VTPSPLDFAACGAILAVVEARENLQPVIARFVITKQVASTRMLEVLKASIEETGVPAL
KTATAQRQAYIRTMLDGGTVFDTTDGNAKGEIEVMANEILELLE"
gene 34455..34667
/locus_tag="EPYR_RS18600"
/old_locus_tag="EPYR_04025"
CDS 34455..34667
/locus_tag="EPYR_RS18600"
/old_locus_tag="EPYR_04025"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014541847.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid partition protein ParG"
/protein_id="WP_014540014.1"
/translation="MKMKLGQHRQLAPALDAITKPVSGSTKKLQTNIDEKLHRRFKTA
CFLQGWEMKDVLTGLIEHWLSENEPS"
CONTIG join(FN392238.1:1..35901)
//
