GenomeNet

Database: RefSeq
Entry: NC_017436
LinkDB: NC_017436
Original site: NC_017436 
LOCUS       NC_017436            1042520 bp    DNA     circular CON 17-DEC-2014
DEFINITION  Chlamydia trachomatis D-LC chromosome, complete genome.
ACCESSION   NC_017436
VERSION     NC_017436.1  GI:385244087
DBLINK      BioProject: PRJNA159879
KEYWORDS    RefSeq.
SOURCE      Chlamydia trachomatis D-LC
  ORGANISM  Chlamydia trachomatis D-LC
            Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae;
            Chlamydia/Chlamydophila group; Chlamydia.
REFERENCE   1  (bases 1 to 1042520)
  AUTHORS   Sturdevant,G.L., Kari,L., Gardner,D.J., Olivares-Zavaleta,N.,
            Randall,L.B., Whitmire,W.M., Carlson,J.H., Goheen,M.M.,
            Selleck,E.M., Martens,C. and Caldwell,H.D.
  TITLE     Frameshift Mutations in a Single Novel Virulence Factor Alter the
            In Vivo Pathogenicity of Chlamydia trachomatis for the Female
            Murine Genital Tract
  JOURNAL   Infect. Immun. 78 (9), 3660-3668 (2010)
   PUBMED   20547745
REFERENCE   2  (bases 1 to 1042520)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2012) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1042520)
  AUTHORS   Sturdevant,G.L., Kari,L., Gardner,D.J., Olivares-Zavaleta,N.,
            Randall,L.B., Whitmire,W.M., Carlson,J.H., Goheen,M.M.,
            Selleck,E.M., Martens,C. and Caldwell,H.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAY-2010) Research Technologies Branch of the Rocky
            Mountain Laboratories, National Institute of Allergy and Infectious
            Diseases, National Institutes of Health, 903 South 4th Street,
            Hamilton, MT 59840, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to CP002054.
            Sequencing Center: Integrated Genomics, Inc., 2355 S. Arlington
            Heights Road, Suite 270, Arlington Heights, IL 60005, USA
            
            Source DNA and bacteria available from Harlan D. Caldwell at
            hcaldwell@niaid.nih.gov<mailto:hcaldwell@niaid.nih.gov>.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1042520
                     /organism="Chlamydia trachomatis D-LC"
                     /mol_type="genomic DNA"
                     /strain="D-LC"
                     /db_xref="taxon:759364"
     gene            join(1041921..1042520,1..1176)
                     /locus_tag="CTDLC_0875"
                     /db_xref="GeneID:12388259"
     CDS             join(1041921..1042520,1..1176)
                     /locus_tag="CTDLC_0875"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811932.1"
                     /db_xref="GI:385244088"
                     /db_xref="GeneID:12388259"
                     /translation="MSIRGVGGNGNSRIPSHNGDGSNRRSQNTKGNNKVEDRVCSLYS
                     SRSNENRESPYAVVDVSSMIESTPTSGETTRASRGVFSRFQRGLVRVADKVRRAVQCA
                     WSSVSTRRSSATRAAESGSSSRTARGASSGYREYSPSAARGLRLMFTDFWRTRVLRQT
                     SPMAGVFGNLDVNEARLMAAYTSECADHLEANKLAGPDGVAAAREIAKRWEQRVRDLQ
                     DKGAARKLLNDPLGRRTPNYQSKNPGEYTVGNSMFYDGPQVANLQNVDTGFWLDMSNL
                     SDVVLSREIQTGLRARATLEESMPMLENLEERFRRLQETCDAARTEIEESGWTRESAS
                     RMEGDEAQGPSRAQQAFQSFVNECNSIEFSFGSFGEHVRVLCARVSRGLAAAGEAIRR
                     CFSCCKGSTHRYAPRDDLSPEGASLAETLARFADDMGIERGADGTYDIPLVDDWRRGV
                     PSIEGEGSDSIYEIMMPIYEVMDMDLETRRSFAVQQGHYQDPRASDYDLPRASDYDLP
                     RSPYPTPPLPPRYQLQNMDVEAGFREAVYASFVAGMYNYVVTQPQERIPNSQQVEGIL
                     RDMLTNGSQTFRDLMRRWNREVDRE"
     gene            complement(1321..1593)
                     /locus_tag="CTDLC_0001"
                     /db_xref="GeneID:12388270"
     CDS             complement(1321..1593)
                     /locus_tag="CTDLC_0001"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005811933.1"
                     /db_xref="GI:385244089"
                     /db_xref="GeneID:12388270"
                     /translation="MLCKVCRGLSSLIVVLGAINTGILGVTGYKVNLLTHLLGEGTMW
                     TQAAYVVTGIAGVMVCLNFLKCCFKKRHGDCCSSKGGYHHHHMDRE"
     misc_feature    complement(1360..1593)
                     /locus_tag="CTDLC_0001"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG2155"
                     /db_xref="CDD:225066"
     gene            1794..2096
                     /gene="gatC"
                     /locus_tag="CTDLC_0002"
                     /db_xref="GeneID:12388272"
     CDS             1794..2096
                     /gene="gatC"
                     /locus_tag="CTDLC_0002"
                     /EC_number="6.3.5.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Glutamyl-tRNA(Gln) amidotransferase subunit C"
                     /protein_id="YP_005811934.1"
                     /db_xref="GI:385244090"
                     /db_xref="GeneID:12388272"
                     /translation="MTESYVNKEEIISLAKNAALELEDAHVEEFVTSMNDVIALMQEV
                     IAIDISDIILEATVHHFVGPEDLREDMVTSDFTQEEFLSNVPVSLGGLVKVPTVIK"
     misc_feature    1803..2093
                     /gene="gatC"
                     /locus_tag="CTDLC_0002"
                     /note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit
                     [Translation, ribosomal structure and biogenesis]; Region:
                     GatC; COG0721"
                     /db_xref="CDD:223793"
     gene            2108..3583
                     /gene="gatA"
                     /locus_tag="CTDLC_0003"
                     /db_xref="GeneID:12388274"
     CDS             2108..3583
                     /gene="gatA"
                     /locus_tag="CTDLC_0003"
                     /EC_number="6.3.5.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase
                     subunit A"
                     /protein_id="YP_005811935.1"
                     /db_xref="GI:385244091"
                     /db_xref="GeneID:12388274"
                     /translation="MYRKSALELRDAVVNRELSVTAITEYFYHRIESHDEQIGAFLSL
                     CKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPFD
                     STVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAV
                     SARFCPIALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVV
                     EDVALAMDAFAGRDPKDSTTRDFFKGTFSQALSLEVPKLIGVPRGFLDGLQEDCKENF
                     FEALAVMEREGSRIIDVDLSVLKHAVPVYYIVASAEAATNLARFDGVRYGHRCAQADN
                     MHEMYARSRKEGFGKEVTRRILLGNYVLSAERQNIFYKKGMAVRARLIDAFQAAFERC
                     DVIAMPVCATPAIRDQDVLDPVSLYLQDVYTVAVNLAYLPAISVPSGLSKEGLPLGVQ
                     FIGERGSDQQICQVGYSFQEHSQIKQLYPKAVNGLFDGGIE"
     misc_feature    2144..3514
                     /gene="gatA"
                     /locus_tag="CTDLC_0003"
                     /note="aspartyl/glutamyl-tRNA amidotransferase subunit A;
                     Reviewed; Region: gatA; PRK00012"
                     /db_xref="CDD:234572"
     gene            3585..5051
                     /gene="gatB"
                     /locus_tag="CTDLC_0004"
                     /db_xref="GeneID:12388282"
     CDS             3585..5051
                     /gene="gatB"
                     /locus_tag="CTDLC_0004"
                     /EC_number="6.3.5.-"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl/glutamyl-tRNA amidotransferase subunit
                     B"
                     /protein_id="YP_005811936.1"
                     /db_xref="GI:385244092"
                     /db_xref="GeneID:12388282"
                     /translation="MGIAHTEWESVIGLEVHVELNTESKLFSPARNHFGDEPNTNISP
                     VCTGMPGSLPVLNKDAVRKAVLFGCAVEGDVALFSRFDRKSYFYPDSPRNFQITQYEH
                     PIVRGGCIRAVVEGEEKTFELAQTHLEDDAGMLKHFGDFAGVDYNRAGVPLIEIVSKP
                     CMFSAEDAVAYANALVSILGYIGISDCNMEEGSIRFDVNISVRPRGSRELRNKVEIKN
                     MNSFTFMAQALEAEKRRQIEEYLSYPNEDPKKVVPAATYRWDPEKKKTVLMRLKERAE
                     DYMYFVEPDLPVLQITETYIDEVRQTLPELPHSKYMRYITDFDIAEDLAMILVGDRHT
                     AHFFETATMSCKNYRALSNWITVEFAGRCKARGKTLPFTGILPEWVAQLVNFIDRGVI
                     TGKIAKEIADRMVSSFGESPEDILRRHPSLLPMTDDHALRAIVKEVVAQNTASVADYK
                     NGKAKALGFLVGQIMKRTEGKAPPKRVNELLLAAMRDM"
     misc_feature    3591..5048
                     /gene="gatB"
                     /locus_tag="CTDLC_0004"
                     /note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit
                     (PET112 homolog) [Translation, ribosomal structure and
                     biogenesis]; Region: GatB; COG0064"
                     /db_xref="CDD:223142"
     misc_feature    3609..4481
                     /gene="gatB"
                     /locus_tag="CTDLC_0004"
                     /note="GatB/GatE catalytic domain; Region: GatB_N;
                     pfam02934"
                     /db_xref="CDD:251629"
     misc_feature    4593..5030
                     /gene="gatB"
                     /locus_tag="CTDLC_0004"
                     /note="GatB domain; Region: GatB_Yqey; pfam02637"
                     /db_xref="CDD:251440"
     gene            complement(5150..6241)
                     /locus_tag="CTDLC_0005"
                     /db_xref="GeneID:12388325"
     CDS             complement(5150..6241)
                     /locus_tag="CTDLC_0005"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811937.1"
                     /db_xref="GI:385244093"
                     /db_xref="GeneID:12388325"
                     /translation="MTPVTPVPPQSPQQVKGLLSRFLTAPDRHPKLRYVYDIALIAIS
                     ILCIVSIILWTQGSGLALFAIAPALAIGALGVTLLVSDLAESQKSKEIADTVAAVSLP
                     FILTGTAAGLMFSAIAVGGGAVILANPLFLMGSMTLGFALMSLHRVTYQYLSNREQWK
                     QQKKLEQVELAAWESHLPKESKSSALEEVRYSPRLMKRGKTWRKRAIRRKNYTPIPLV
                     DKTLQTMQPDALFSSTTTHSTDSEQILTSVSPQSSDTESSSSSSFHTPPNSDKELSDS
                     NSSDSSSSSEYMDALETVAAGDVSGITPPSKPSSSPKTTRRVVKLSRSERNAQHHRNK
                     DQEQRQDSSESSEEDSSSDSSQKKKPSRK"
     misc_feature    complement(5822..>6190)
                     /locus_tag="CTDLC_0005"
                     /note="Protein of unknown function (DUF1275); Region:
                     DUF1275; cl01453"
                     /db_xref="CDD:260942"
     gene            complement(6369..6938)
                     /locus_tag="CTDLC_0006"
                     /db_xref="GeneID:12388359"
     CDS             complement(6369..6938)
                     /locus_tag="CTDLC_0006"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811938.1"
                     /db_xref="GI:385244094"
                     /db_xref="GeneID:12388359"
                     /translation="MPSTVAPIKGQDHFLNLVFPERVAAAYMSPLAQKYPKAALSIAS
                     LAGFLLGILKLITFPVLCAAGLFVFPIRGLISCLFHKSFQGCSGYVLATFLSLFSLAL
                     TIVGIVSCITWAPGFIFPMISVSIAFATVETCFQIYTHLFPALEHKPSSSLKIEIAAA
                     KLPRSSSAPDLNYPSLPTQSASPSQRFSA"
     misc_feature    complement(<6597..6743)
                     /locus_tag="CTDLC_0006"
                     /note="putative inner membrane protein translocase
                     component YidC; Validated; Region: PRK00247"
                     /db_xref="CDD:178945"
     gene            7251..8201
                     /locus_tag="CTDLC_0007"
                     /db_xref="GeneID:12388367"
     CDS             7251..8201
                     /locus_tag="CTDLC_0007"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811939.1"
                     /db_xref="GI:385244095"
                     /db_xref="GeneID:12388367"
                     /translation="MLKVLFHTMTLFGHLLSTPIYIVGDACGKDRDEYKNPPLRAFSF
                     ESQFLQIENAKFKTLPDQSLRYRQADTSLFATIPVTEMSGFLLSSRYLGAEVSWKSSK
                     ELQDTDLQAVGYFAFQDKSFYQYITLSVGAYTLALTNWQWSVLFSGMVDPENIEIGSG
                     LYQVVLSSKYHASESLSVIMGVINEVGLHDKQAWPLLGFSYKPEDRLTLNCIYPVNFS
                     AEYQCTPVCDLGVAYRLTRLRKKFPKNSLATSEGIFEYSGREIEGNIKLIFWPGQSLK
                     MFGGYSVGNDISLANAHNEDEKIYKFGSSLFFGASANLHF"
     gene            complement(8217..9125)
                     /gene="rnhB_1"
                     /locus_tag="CTDLC_0008"
                     /db_xref="GeneID:12388257"
     CDS             complement(8217..9125)
                     /gene="rnhB_1"
                     /locus_tag="CTDLC_0008"
                     /EC_number="3.1.26.4"
                     /codon_start=1
                     /transl_table=11
                     /product="Ribonuclease HIII"
                     /protein_id="YP_005811940.1"
                     /db_xref="GI:385244096"
                     /db_xref="GeneID:12388257"
                     /translation="MIMPSSFVSQLSPSLFSILREQLEKKGFTISIPPHTVFQGRSPT
                     VSCTVYQSGKIVVQGKGTQEFVEFFLEPEILQTFSSQNVQQDLRSRIGVDESGKGDFF
                     GPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQNIRSLCACKVITLFPEKY
                     NALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASSERVLLQAVRKKCSDI
                     ELIQRHRAEQDVVVAAASILAREAFLSSIHALESQYQIRLLKGASGKVKQRAKEILHN
                     KGQVVLEKVCKTHFKTFNEVLGSGNQ"
     misc_feature    complement(8865..9113)
                     /gene="rnhB_1"
                     /locus_tag="CTDLC_0008"
                     /note="Domain of unknown function (DUF3378); Region:
                     DUF3378; pfam11858"
                     /db_xref="CDD:256678"
     misc_feature    complement(8250..9104)
                     /gene="rnhB_1"
                     /locus_tag="CTDLC_0008"
                     /note="ribonuclease HIII; Region: rnhC; TIGR00716"
                     /db_xref="CDD:129799"
     misc_feature    complement(8238..8858)
                     /gene="rnhB_1"
                     /locus_tag="CTDLC_0008"
                     /note="Bacterial type 2 ribonuclease, HII and HIII-like;
                     Region: RNase_HII_bacteria_HIII_like; cd06590"
                     /db_xref="CDD:260000"
     misc_feature    complement(order(8250..8258,8337..8339,8406..8408,
                     8445..8447,8451..8453,8526..8534,8613..8621,8736..8738,
                     8829..8846))
                     /gene="rnhB_1"
                     /locus_tag="CTDLC_0008"
                     /note="RNA/DNA hybrid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:260000"
     misc_feature    complement(order(8445..8447,8532..8534,8841..8846))
                     /gene="rnhB_1"
                     /locus_tag="CTDLC_0008"
                     /note="active site"
                     /db_xref="CDD:260000"
     gene            9346..9804
                     /gene="yfgA"
                     /locus_tag="CTDLC_0009"
                     /db_xref="GeneID:12388397"
     CDS             9346..9804
                     /gene="yfgA"
                     /locus_tag="CTDLC_0009"
                     /codon_start=1
                     /transl_table=11
                     /product="Sigma-54 interaction/ATP-binding protein"
                     /protein_id="YP_005811941.1"
                     /db_xref="GI:385244097"
                     /db_xref="GeneID:12388397"
                     /translation="MGRANQGNYMSEHVHKELLHLGEVFRSQREERALSLKDVEAATS
                     IRLSALEAIEAGHLGKLISPVYAQGFMKKYAAFLDMDGDRLLKEHPYVLKIFQEFSDQ
                     NMDMLLDLESMGGRNSPEKAIRSWLNLGWAGVFVVGAACIWWLGNLFNLF"
     misc_feature    9397..>9801
                     /gene="yfgA"
                     /locus_tag="CTDLC_0009"
                     /note="Predicted transcriptional regulator contains
                     Xre-like HTH domain [Function unknown]; Region: COG1426"
                     /db_xref="CDD:224343"
     misc_feature    9415..9600
                     /gene="yfgA"
                     /locus_tag="CTDLC_0009"
                     /note="Helix-turn-helix domain; Region: HTH_25; pfam13413"
                     /db_xref="CDD:257738"
     gene            complement(9791..11158)
                     /gene="htrB"
                     /locus_tag="CTDLC_0010"
                     /db_xref="GeneID:12388398"
     CDS             complement(9791..11158)
                     /gene="htrB"
                     /locus_tag="CTDLC_0010"
                     /EC_number="2.3.1.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Lipid A biosynthesis lauroyl acyltransferase"
                     /protein_id="YP_005811942.1"
                     /db_xref="GI:385244098"
                     /db_xref="GeneID:12388398"
                     /translation="MLFKRLRTGGKILVDHLVYGLGLGVLTILRLLPRSSLRLFSKGL
                     GTALFYFISDVRKTALTNLALAFPEKSFAERYQIARQSVQQMIITFVELATVDKFAKH
                     IDEMIAIATSEDAPEGFFPEEVSSQQELDHFFSRLDRQEGAILFCGHQANWELPFLYI
                     TKRYPGLAFAKPVKNRRLNQKIISLRESFQGKIVPPQNAINQALRALHRGEVVGIVGD
                     QVLLSSEYSYPLFGSQAFTTTSPALLAYKTKKTVIAVAIYRKPNGNYLVVPSKAFHAN
                     TELSIRESTEQLMDRLMRFLEKGITCKPEQWLWLHKRWKRKLRHKFKRRYAFSHILII
                     VKGTSLQALQRFLIEFGEFYADASLSLAIIGAADTVLANSFAPYSLQFFSSEEELLAA
                     PNFFPAIVDLFGLSRKTRLHYKRTGSRKIFTRNELKDSLLQKQSLIQSFHKLLRRVDT
                     RSRKG"
     misc_feature    complement(10214..10771)
                     /gene="htrB"
                     /locus_tag="CTDLC_0010"
                     /note="Lysophospholipid Acyltransferases (LPLATs) of
                     Glycerophospholipid Biosynthesis: LABLAT-like; Region:
                     LPLAT_LABLAT-like; cd07984"
                     /db_xref="CDD:153246"
     misc_feature    complement(order(10496..10504,10640..10651,10697..10699,
                     10703..10705,10712..10714))
                     /gene="htrB"
                     /locus_tag="CTDLC_0010"
                     /note="putative acyl-acceptor binding pocket; other site"
                     /db_xref="CDD:153246"
     gene            complement(11290..12546)
                     /locus_tag="CTDLC_0011"
                     /db_xref="GeneID:12388399"
     CDS             complement(11290..12546)
                     /locus_tag="CTDLC_0011"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811943.1"
                     /db_xref="GI:385244099"
                     /db_xref="GeneID:12388399"
                     /translation="MINFVSWISRNWLQKLVSLGFAIIIWALANQSITVTRTFHNIPV
                     RVIDLAPEQTVIGLQANGLLKKKVAMMITGNKSVVEKLRPSNLEIVISAKGRTESWIE
                     TIDPYNLVCLDTDIHLRKNIKSVTSEDIFIRLTQFVTEDVSVTITKPIGRAPKGYEYL
                     DTWPKYLVQKVSGPKEYVSSLKDHGLELTFNLNKVSFEELDRNRLAQGNLDEVVYLVP
                     EDWKKVYIPFDNSYMELNDPQADFLRLLFLKQEFIPLNINLPVLLFFPVENSQLVNPQ
                     NCYLEENAPLVLNHGIYQMDLPLYVKDVSHLFLDVVKNNIALTIIMEPPVKSQREHFI
                     HWAVEFLDEKTLENTFVQAVMAQEQKTNKHMILDEAGIRHRFREYLRKLTLFDQNGEP
                     LALTARTSGNKVIIQVTSSSLKKKSS"
     gene            complement(12543..13337)
                     /gene="ybbP"
                     /locus_tag="CTDLC_0012"
                     /db_xref="GeneID:12388400"
     CDS             complement(12543..13337)
                     /gene="ybbP"
                     /locus_tag="CTDLC_0012"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane spanning protein"
                     /protein_id="YP_005811944.1"
                     /db_xref="GI:385244100"
                     /db_xref="GeneID:12388400"
                     /translation="MFVGITYYTTPLLEIALIWVVLNYLLKFFWGTGAMDLVFGLLSF
                     LCLFVLAEKLHLPVIRNLMLHVVNIAAIVVFIIFQPEIRLALSRIRLRRGKFVINMQD
                     EFIDHLTACIYRMAERQIGALIVLENERLLNDLLNLSAVKINADFSEELLEAIFEPSS
                     HLHDGAVLMRGETISYARVILPLAHDTTQLSRSMGTRHRAALGASQRTDALVIVVSEK
                     TGAVSLARDGILTRGVKMDRFKAILRSILTRNERKTNPIISWMRKK"
     misc_feature    complement(12621..13337)
                     /gene="ybbP"
                     /locus_tag="CTDLC_0012"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG1624"
                     /db_xref="CDD:224539"
     misc_feature    complement(12645..13016)
                     /gene="ybbP"
                     /locus_tag="CTDLC_0012"
                     /note="DisA bacterial checkpoint controller
                     nucleotide-binding; Region: DisA_N; pfam02457"
                     /db_xref="CDD:251307"
     gene            13612..14952
                     /gene="cydA"
                     /locus_tag="CTDLC_0013"
                     /db_xref="GeneID:12388401"
     CDS             13612..14952
                     /gene="cydA"
                     /locus_tag="CTDLC_0013"
                     /EC_number="1.10.3.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Cytochrome d ubiquinol oxidase subunit I"
                     /protein_id="YP_005811945.1"
                     /db_xref="GI:385244101"
                     /db_xref="GeneID:12388401"
                     /translation="MSAEILARVQFALFIGFHYLFVPISLGLSMMIVLMEGLYLFTKK
                     SIYKQLTWFWIRIFTLTFVVGVVTGLMQIFSFGANWSRFAEYTGNVFGMFLGSEGMFA
                     FFLESGFLGVLLFGRYKVSKKMHFFSACMVALGAHMSAFWIVCANSWMQTPSGYEMVM
                     RNGMLVPQMTSFWAAVLSPSALQRFTHVVLGAWLSGIFLVLSVSAHYLRKERHKDFAN
                     QGLKISMFCAFLVLALQLWSADVTARGVAKHQPAKLAAFEGVFKTQGHTPIYLLGIVD
                     MKKERVIGIPIPSGLSLLVHRNAKTPVTGLDQFPKDEWPNVAFVFQTYHLMVMLWGVM
                     VLLALIAFAVYKKKSWSCKKGILWILSFSVLCPELCNEIGWISTEVGRQPWVVYGLLK
                     TKDATSPIVNAGQIWQSLILFSIIFICLLSVFVSLLLKKIGEGPDEQDLIEVDL"
     misc_feature    13627..14925
                     /gene="cydA"
                     /locus_tag="CTDLC_0013"
                     /note="Bacterial Cytochrome Ubiquinol Oxidase; Region:
                     Bac_Ubq_Cox; pfam01654"
                     /db_xref="CDD:250773"
     gene            14949..16025
                     /gene="cydB"
                     /locus_tag="CTDLC_0014"
                     /db_xref="GeneID:12388402"
     CDS             14949..16025
                     /gene="cydB"
                     /locus_tag="CTDLC_0014"
                     /EC_number="1.10.3.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="YP_005811946.1"
                     /db_xref="GI:385244102"
                     /db_xref="GeneID:12388402"
                     /translation="MRAFFMEFSLATILPVVWYVILCIAVFAYSLGDGFDLGLSTIYF
                     LSKDEKERRLLLNSIGPVWDGNEVWFVIMFAGLFAGFPTAYGTLLSIFYMPIWTMVML
                     YIFRGCSLEFRSKAESNRWKLFWDVLFSISGMSISFFLGTLAGNLLVGFPIAPDTSYS
                     SLSWKLFFRPYPVLCGLFVVTAFALHGISFALMKTTEGLHERLKNKFSYVLSSYLVLY
                     LSLLIATILGMPQTLGVCCRIEGAPGIPAYPLIILLSVVTLSCCYAEKRAVSIGKYGK
                     AFVLSCINLLSPILAYNILLFPNLLVSTVDNRYTMTVFNAAAETRTLQHLVTIVLIGL
                     PFVVAYAVYIYRVFRGKTDFPSIY"
     misc_feature    14970..16022
                     /gene="cydB"
                     /locus_tag="CTDLC_0014"
                     /note="Cytochrome bd-type quinol oxidase, subunit 2
                     [Energy production and conversion]; Region: AppB; COG1294"
                     /db_xref="CDD:224213"
     misc_feature    14988..15995
                     /gene="cydB"
                     /locus_tag="CTDLC_0014"
                     /note="Cytochrome oxidase subunit II; Region: Cyto_ox_2;
                     pfam02322"
                     /db_xref="CDD:251222"
     gene            complement(16123..17427)
                     /gene="phoH"
                     /locus_tag="CTDLC_0015"
                     /db_xref="GeneID:12388403"
     CDS             complement(16123..17427)
                     /gene="phoH"
                     /locus_tag="CTDLC_0015"
                     /codon_start=1
                     /transl_table=11
                     /product="Phoh"
                     /protein_id="YP_005811947.1"
                     /db_xref="GI:385244103"
                     /db_xref="GeneID:12388403"
                     /translation="MKKTSVIDTSVLIYDPKALSSFSNTRIIIPFTVIEELESCAKFR
                     DESGKNASRALGNIRVLLEQSERPSSGQILLKNGSELCIEVSPLVNLSNHKKQKKHLT
                     LELLQIISQRESVVFVTKSLGRRVHAEALGIEAKDYENKCVSFQSLYRGHRKLKVANS
                     TIEYFYKDGSIAFPSDLSPLPSPNEYFFLSGDSDNYSAVGRYSSKDNKILSLKPAPEK
                     IWGVKPLNIEQRCALDLLLRDDIKLVTLMGQAGSGKTILALAAAMYQVFEKPKYNKLL
                     VSRPIIPMGKDIGFLPGIKEAKLMHWMQPIYDNMEFLFDVNNMGDFSETLHSLMETKK
                     LEMEALTYIRGRSLPKVFMIIDEAQNLTPHEIKTIISRAGKGTKIVLTGDPTQIDSLY
                     FDENSNGLTYLVGKFHHLPLYGHMFMTRTERSELAAAAATIL"
     misc_feature    complement(16126..17427)
                     /gene="phoH"
                     /locus_tag="CTDLC_0015"
                     /note="NYN ribonuclease and ATPase of PhoH family domains
                     [General    function prediction only]; Region: COG1875"
                     /db_xref="CDD:224787"
     misc_feature    complement(17008..17421)
                     /gene="phoH"
                     /locus_tag="CTDLC_0015"
                     /note="PIN (PilT N terminus) domain: Superfamily; Region:
                     PIN_SF; cl14812"
                     /db_xref="CDD:265458"
     misc_feature    complement(order(17065..17067,17404..17406))
                     /gene="phoH"
                     /locus_tag="CTDLC_0015"
                     /note="putative active site [active]"
                     /db_xref="CDD:189022"
     misc_feature    complement(16144..16767)
                     /gene="phoH"
                     /locus_tag="CTDLC_0015"
                     /note="PhoH-like protein; Region: PhoH; cl17668"
                     /db_xref="CDD:266766"
     gene            17624..18364
                     /locus_tag="CTDLC_0016"
                     /db_xref="GeneID:12388404"
     CDS             17624..18364
                     /locus_tag="CTDLC_0016"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811948.1"
                     /db_xref="GI:385244104"
                     /db_xref="GeneID:12388404"
                     /translation="MEVVMKVKINDQFICISPYISARWNQIAFIESCDGGTEGGITLK
                     LHLIDGETVSIPNLGQAIVDEVFQEHLLYLESTAPQKNKEEEKISSLLGAVQQMAKGC
                     EVQVFSQKGLVSMLLGGAGSINVLLQHSPEHKDHPDLPTDLLERIAQMMRSLSIGPTS
                     ILAKPEPHCNCLHCQIGRATVEEEDAGVSDEDLTFRSWDISQSGEKMYTVTDPLNPEE
                     QFNVYLGTPIGCTCGQPYCEHVKAVLYT"
     gene            18418..19851
                     /locus_tag="CTDLC_0017"
                     /db_xref="GeneID:12388405"
     CDS             18418..19851
                     /locus_tag="CTDLC_0017"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811949.1"
                     /db_xref="GI:385244105"
                     /db_xref="GeneID:12388405"
                     /translation="MTFSFKSIIIPSLEDESSRAANASLEAQILANCRSFCVRTLSIS
                     MLIFALSFGADACLCAADLSKAKVEASVGDRAAFSPFTGEIKGNRVRLRLAPHTDSFI
                     IKELSKGDCLAVLGESKDYYVVAAPEGVRGYVFRTFVLDNVIEGEKVNVRLEPSTSAP
                     ILARLSKGTVVKTLGAAQGKWIEIALPKQCVFYVAKNFVKNVGALDLYNQKEGQKKLA
                     LDLLSSAMDFADAELQKKIEDIDLDAIYKKMNLAQSEEFKDVPGLQSLVQKALERVQE
                     AFLAKSLEKSSVKVPEIRHKVLEEIAVVSPAVEETPVVTKTEEQKVTTVPVPAPAVVT
                     EPAQDLSSVKGSLLSHYIRKKGFVKASPVIEGRESFERSLFAVWLSLQPEEIRHQLTM
                     ESFYRDEQKKKRVLTGELEVYPHIVKNNPGDYLLKNGEDVVAFVYATSIDLSKWLGKS
                     VVLECVSRPNNHFAFPAYIVLSVKEGA"
     misc_feature    18655..18840
                     /locus_tag="CTDLC_0017"
                     /note="Bacterial SH3 domain homologues; Region: SH3b;
                     smart00287"
                     /db_xref="CDD:214600"
     misc_feature    18844..19017
                     /locus_tag="CTDLC_0017"
                     /note="Bacterial SH3 domain homologues; Region: SH3b;
                     smart00287"
                     /db_xref="CDD:214600"
     gene            complement(19913..20416)
                     /locus_tag="CTDLC_0018"
                     /db_xref="GeneID:12388406"
     CDS             complement(19913..20416)
                     /locus_tag="CTDLC_0018"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811950.1"
                     /db_xref="GI:385244106"
                     /db_xref="GeneID:12388406"
                     /translation="MYVFSSTFFFMQHAHNTDSLPAWDCLQHNYLRRNALTSFCSYVP
                     ILSTVVGIRTLYNMRKLHTAFVQRTGGFLCQNDPNIPCDKFPCSIIRKEWPQVHTKAM
                     QEVFGIKALVCLGSLILKIFRAVKAFFHRTFSPSLLPEQDTSIQLPDSPQSGIPEETL
                     LETPRSS"
     gene            21417..24542
                     /gene="ileS"
                     /locus_tag="CTDLC_0019"
                     /db_xref="GeneID:12388407"
     CDS             21417..24542
                     /gene="ileS"
                     /locus_tag="CTDLC_0019"
                     /EC_number="6.1.1.5"
                     /codon_start=1
                     /transl_table=11
                     /product="Isoleucyl-tRNA synthetase, mupirocin resistant"
                     /protein_id="YP_005811951.1"
                     /db_xref="GI:385244107"
                     /db_xref="GeneID:12388407"
                     /translation="MNNQRMDNEDKISISAKEEKILSFWKEQDIFQKTLDNREGCPTF
                     SFYDGPPFATGLPHYGHLLAGTIKDVVCRYASMDGHYVPRRFGWDCHGVPVEYEVEKS
                     LGLTEPGAIERFGVANFNEECRKIVFRYADEWKYFVDRIGRWVDFSATWRTMDLSFME
                     SVWWVFRSLYDQGLVYEGTKVVPFSTKLGTPLSNFEAGQNYKEVDDPSVVVKFALQDN
                     QGFLLAWTTTPWTLVSNMALAVHPELTYVRIKDKESGDEYILGQESLPRWFPDRESYE
                     WIGQLSGKSLVGQSYEPLFPYFQDKKELEAFRILPADFIEESEGTGIVHMAPAFGEAD
                     FFACQEHNVPLVCPVDNQGCYTAEVKDFVGEYIKSADKGIARRLKNENKLFYQGTVRH
                     RYPFCWRTDSPLIYKAVNSWFVAVEKVKSKMLKANESIHWTPEHIKQGRFGKWLEGAR
                     DWAISRNRYWGTPIPIWRSDDGELLVIGSIQELEALSGQKIVDLHRHFIDEIEINQNG
                     KSFRRIPYVFDCWFDSGAMPYAQNHYPFERAEETEACFPADFIAEGLDQTRGWFYTLT
                     VIAAALFDQPAFKNVIVNGIILAEDGNKMSKRLNNYPSPKMIMDAYGADALRLYLLNS
                     VVVKAEDLRFSDKGVESVLKQVLLPLSNALAFYKTYAELYGFDPKETDNIELAEIDRW
                     ILSSLYSLVGKTRESMSQYDLHAAVNPFVDFIEDLTNWYIRRSRRRFWDAEDSADRRA
                     AFSTLYEVLVVFSKVIAPFIPFIAEDMYQQLRGETDPESVHLCDFPHVVLEKILPDLE
                     RKMQDIREIVALGHSLRKEHKLKVRQPLQNVYIVGSKERKEALAQVGSLIGEELNVKD
                     VHFCSETPEYVTTLIKPNFRTLGKKVGNRLPEIQRALAGLPQEQIQAFMHKGQMVVSL
                     GEETISLDKEDITVSWASAEGFVARSSASFVAVLDCQLTEPLIMEGIARELVNKINTM
                     RRNRKLHVSDRIAIRLHAPVIVQEAFALHKEYICEETLTTSVSVIDYKEGEEWDINGH
                     AVSFVLERVER"
     misc_feature    21441..24533
                     /gene="ileS"
                     /locus_tag="CTDLC_0019"
                     /note="isoleucyl-tRNA synthetase; Reviewed; Region: ileS;
                     PRK06039"
                     /db_xref="CDD:235681"
     misc_feature    21540..23318
                     /gene="ileS"
                     /locus_tag="CTDLC_0019"
                     /note="catalytic core domain of isoleucyl-tRNA
                     synthetases; Region: IleRS_core; cd00818"
                     /db_xref="CDD:173909"
     misc_feature    order(21564..21572,21588..21590,21594..21599,21606..21608,
                     22737..22739,22977..22979,22986..22988,23073..23087,
                     23091..23093,23097..23099,23166..23180,23190..23207,
                     23307..23309)
                     /gene="ileS"
                     /locus_tag="CTDLC_0019"
                     /note="active site"
                     /db_xref="CDD:173909"
     misc_feature    21588..21599
                     /gene="ileS"
                     /locus_tag="CTDLC_0019"
                     /note="HIGH motif; other site"
                     /db_xref="CDD:173909"
     misc_feature    23196..23210
                     /gene="ileS"
                     /locus_tag="CTDLC_0019"
                     /note="KMSKS motif; other site"
                     /db_xref="CDD:173909"
     misc_feature    23316..23852
                     /gene="ileS"
                     /locus_tag="CTDLC_0019"
                     /note="Anticodon-binding domain of archaeal, bacterial,
                     and eukaryotic cytoplasmic isoleucyl tRNA synthetases;
                     Region: Anticodon_Ia_Ile_ABEc; cd07961"
                     /db_xref="CDD:153415"
     misc_feature    order(23325..23327,23337..23339,23346..23348,23361..23363,
                     23370..23372,23379..23384,23526..23528,23535..23540,
                     23547..23552,23559..23561,23571..23573,23583..23585,
                     23592..23594,23841..23843,23850..23852)
                     /gene="ileS"
                     /locus_tag="CTDLC_0019"
                     /note="tRNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:153415"
     misc_feature    order(23370..23372,23379..23381)
                     /gene="ileS"
                     /locus_tag="CTDLC_0019"
                     /note="anticodon binding site; other site"
                     /db_xref="CDD:153415"
     gene            complement(24601..26487)
                     /gene="lepB"
                     /locus_tag="CTDLC_0020"
                     /db_xref="GeneID:12388408"
     CDS             complement(24601..26487)
                     /gene="lepB"
                     /locus_tag="CTDLC_0020"
                     /EC_number="3.4.21.89"
                     /codon_start=1
                     /transl_table=11
                     /product="Signal peptidase I"
                     /protein_id="YP_005811952.1"
                     /db_xref="GI:385244108"
                     /db_xref="GeneID:12388408"
                     /translation="MTSSYMSRLYSLNKSRRILHSSFRLLKSTKMLSHPETQKELQEV
                     LKQLEEAILDQNREDASLFAKQAQAIQKRFPKSKLRATFDLIYALTFAAILAFLIRQF
                     WFELYEVPTGSMRPTILEQDRILVSKTTFGLRLPFSNKSIGYTPEAITRGELVVFTVG
                     DLPIPSADTKYFGIIPGKKRYIKRCMGKPGDTVYFYGGKIYGIDCDGEPIFPQNTENL
                     YHVPYISFDGTPEILTHSEEQTDVIFNQFHTPCGKISLPQQASYGQFFYKNAWHNDTP
                     YALKDPHNEPVSYADLFGIKNFAMVRILTKKQAALTHVLPSPLSDTYLEIAHTPNVSY
                     PHPHLRPFETQLIPTIEPMKTLLPLRKEHIHLIRNNLTTSRFTVVDGYAYKYQPAPMN
                     TSGMARMFALPMPNIPDGCYEFSKGDVFKINMSGFRTKLKQPHPLTQLSNSQVIDLFN
                     CGISFHTIYIPKNPQYAPFPNRYAFFHQGNLFVMDSPVFIDSDPALQKFIVSEEEKEL
                     QSSEDKPYIAFIDRGPPPESTEEFVSFITNFGLKIPEGHVLVLGDNCPMSADSRDFGF
                     VPVENLLGSPVGIFWPINRLGLLSSNITPLSLPGYLVNGLALGAFLYCIGLWYYRKNH
                     RLFP"
     misc_feature    complement(<25927..26175)
                     /gene="lepB"
                     /locus_tag="CTDLC_0020"
                     /note="The S26 Type I signal peptidase (SPase; LepB;
                     leader peptidase B; leader peptidase I; EC 3.4.21.89)
                     family members are essential membrane-bound serine
                     proteases that function to cleave the amino-terminal
                     signal peptide extension from proteins that are...;
                     Region: S26_SPase_I; cd06530"
                     /db_xref="CDD:119398"
     misc_feature    complement(order(25939..25941,26149..26151))
                     /gene="lepB"
                     /locus_tag="CTDLC_0020"
                     /note="Catalytic site [active]"
                     /db_xref="CDD:119398"
     misc_feature    complement(24736..>25083)
                     /gene="lepB"
                     /locus_tag="CTDLC_0020"
                     /note="signal peptidase I, bacterial type; Region:
                     sigpep_I_bact; TIGR02227"
                     /db_xref="CDD:233790"
     misc_feature    complement(24766..>24846)
                     /gene="lepB"
                     /locus_tag="CTDLC_0020"
                     /note="The S26 Type I signal peptidase (SPase; LepB;
                     leader peptidase B; leader peptidase I; EC 3.4.21.89)
                     family members are essential membrane-bound serine
                     proteases that function to cleave the amino-terminal
                     signal peptide extension from proteins that are...;
                     Region: S26_SPase_I; cd06530"
                     /db_xref="CDD:119398"
     gene            complement(26673..27461)
                     /locus_tag="CTDLC_0021"
                     /db_xref="GeneID:12388409"
     CDS             complement(26673..27461)
                     /locus_tag="CTDLC_0021"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811953.1"
                     /db_xref="GI:385244109"
                     /db_xref="GeneID:12388409"
                     /translation="MKISHNRRESIPEHFMKKQEKMHPQNLLKVFIFFLAFFISYPSA
                     EAHSPLQSSIQEKILTARPGDYAVLSRGSQKFFFLIRQSSSEATWVEMSEFASLTQQE
                     KKLVEQSSWKNAFHQLQSSKKVYLLRISKNPLMIFVLKNAQWMPLSEKDPLPFFVKIL
                     RLPLSPAPSHLIKYKGKERTPWSPRTSLNGELITLPSSAWISVWPKDSSPLSEKNILI
                     YFSNNERLAFPLWTSIDTPTGTVIIKTIEMGHQAASSYPALPNF"
     gene            27492..27818
                     /gene="rpmE2"
                     /locus_tag="CTDLC_0022"
                     /db_xref="GeneID:12388410"
     CDS             27492..27818
                     /gene="rpmE2"
                     /locus_tag="CTDLC_0022"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="YP_005811954.1"
                     /db_xref="GI:385244110"
                     /db_xref="GeneID:12388410"
                     /translation="MKKNTHPEYRQVLFVDSSTGYKFVCGSTYQTDKTEVFEGQEYPV
                     CYVSVSSSSHPFFTGSKKLVDAEGRVDKFLKRYSGIKQSAPKPETVVEDVLPKGKKKS
                     PAKKKK"
     misc_feature    27492..27749
                     /gene="rpmE2"
                     /locus_tag="CTDLC_0022"
                     /note="50S ribosomal protein L31 type B; Reviewed; Region:
                     rpmE2; PRK01678"
                     /db_xref="CDD:234969"
     gene            28006..29085
                     /gene="prfA"
                     /locus_tag="CTDLC_0023"
                     /db_xref="GeneID:12388411"
     CDS             28006..29085
                     /gene="prfA"
                     /locus_tag="CTDLC_0023"
                     /codon_start=1
                     /transl_table=11
                     /product="Bacterial Peptide Chain Release Factor 1 (RF-1)"
                     /protein_id="YP_005811955.1"
                     /db_xref="GI:385244111"
                     /db_xref="GeneID:12388411"
                     /translation="MEIKVLECLKRLEEVEKQISDPNIFSNPKEYSSLSKEHARLSEI
                     KNAHESLVATKKILQDDKLALSTEKDPEIVAMLEEGVLVGEEAVERLSKQLENLLIPP
                     DPDDDLSVIMELRAGTGGDEAALFVGDCVRMYHLYAASKGWQCEVLSTSESDLGGYKE
                     YVMGISGASVKRFLQYEAGTHRVQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFID
                     EKDLRIDTFRSSGAGGQHVNVTDSAVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKA
                     RIRDAEVQKRAQEASAMRSAQVGSGDRSERIRTYNFPQNRVTDHRIGLTLYNLDRVME
                     GELDMITTALVTHVHRQLFGHEETA"
     misc_feature    28006..29046
                     /gene="prfA"
                     /locus_tag="CTDLC_0023"
                     /note="peptide chain release factor 1; Validated; Region:
                     prfA; PRK00591"
                     /db_xref="CDD:234801"
     misc_feature    28198..28536
                     /gene="prfA"
                     /locus_tag="CTDLC_0023"
                     /note="PCRF domain; Region: PCRF; pfam03462"
                     /db_xref="CDD:251973"
     misc_feature    28627..28968
                     /gene="prfA"
                     /locus_tag="CTDLC_0023"
                     /note="RF-1 domain; Region: RF-1; pfam00472"
                     /db_xref="CDD:249886"
     gene            29069..29941
                     /locus_tag="CTDLC_0024"
                     /db_xref="GeneID:12388412"
     CDS             29069..29941
                     /locus_tag="CTDLC_0024"
                     /EC_number="2.1.1.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Peptide release factor-glutamine
                     N5-methyltransferase"
                     /protein_id="YP_005811956.1"
                     /db_xref="GI:385244112"
                     /db_xref="GeneID:12388412"
                     /translation="MKKLLREASEYLLSRGIRFPQREAEDILMDLLEISSRSALHQAK
                     LSSEEQSLYWKRLRKRGDRCPTAYIHGKVHFLGVELQVTPQVLIPRQETEIFVEQIIG
                     YLQMHKEKTTFYDVCCGSGCIGLAVRKHCPHVRVTLSDISPEALAIAESNARSNALAV
                     DFLLGDLFDPFSFPADVLVCNPPYLSYKEFFESDPEVRCHEPWKALVGGVSGLEFYHR
                     IATHIHKILVSGGVGWLEIGSTQGEDIKQIFHAKGIRGRVLKDYAQLDRFFFLENQAN
                     DAVSSGEVSGFSER"
     misc_feature    29069..29887
                     /locus_tag="CTDLC_0024"
                     /note="N5-glutamine S-adenosyl-L-methionine-dependent
                     methyltransferase; Provisional; Region: PRK09328"
                     /db_xref="CDD:236467"
     misc_feature    29402..29779
                     /locus_tag="CTDLC_0024"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    order(29414..29434,29486..29491,29561..29569,29609..29611)
                     /locus_tag="CTDLC_0024"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            29938..31284
                     /gene="ffh"
                     /locus_tag="CTDLC_0025"
                     /db_xref="GeneID:12388413"
     CDS             29938..31284
                     /gene="ffh"
                     /locus_tag="CTDLC_0025"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle subunit Ffh/Srp54"
                     /protein_id="YP_005811957.1"
                     /db_xref="GI:385244113"
                     /db_xref="GeneID:12388413"
                     /translation="MISSLSQKLSNIFSSLFTAKRVTEESISDSIREVRLALLDADVN
                     YQAVKDFIAKVKQKVVGEEVWKHVSPGQQFIKCLHEELSSSLASEQTAVSLRGCPAVI
                     LLCGLQGAGKTTTCAKLADYFLREKKAKKVLVASCDLKRFSAVEQLEGLVKQTGADFF
                     RREGNDPVDMAAEAVQHAKSQGYDLVLVDTAGRLHVDDALMDELVAIARVTSPCETLF
                     VMNLAMGQDAVVTAKAFDERLGLTGVVVSMADGDARAGAVLSVKSLLNKPIKFEGCGE
                     KIKDLRPFNAQSMAERILGMGDTISLVDKMRECISEEENKELEEKLTKATFTYEDFHK
                     QILAFRRLGPLRKIMNMMPSFGGAKPSDKDLEESEKQMKRNEAIILSMTPEERKELVE
                     LSMSRMKRIAAGCGLTLGDVNQFRKQMMQSKKFFKGMTREKMEQMGKKMSGGNLWR"
     misc_feature    29947..31221
                     /gene="ffh"
                     /locus_tag="CTDLC_0025"
                     /note="signal recognition particle protein; Region: ffh;
                     TIGR00959"
                     /db_xref="CDD:233210"
     misc_feature    29962..30183
                     /gene="ffh"
                     /locus_tag="CTDLC_0025"
                     /note="SRP54-type protein, helical bundle domain; Region:
                     SRP54_N; smart00963"
                     /db_xref="CDD:214941"
     misc_feature    30235..30756
                     /gene="ffh"
                     /locus_tag="CTDLC_0025"
                     /note="The signal recognition particle (SRP) mediates the
                     transport to or across the plasma membrane in bacteria and
                     the endoplasmic reticulum in eukaryotes. SRP recognizes
                     N-terminal sighnal sequences of newly synthesized
                     polypeptides at the ribosome. The...; Region: SRP;
                     cd03115"
                     /db_xref="CDD:239389"
     misc_feature    30253..30276
                     /gene="ffh"
                     /locus_tag="CTDLC_0025"
                     /note="P loop; other site"
                     /db_xref="CDD:239389"
     misc_feature    order(30349..30351,30511..30513,30676..30678,30685..30690)
                     /gene="ffh"
                     /locus_tag="CTDLC_0025"
                     /note="GTP binding site [chemical binding]; other site"
                     /db_xref="CDD:239389"
     misc_feature    30913..31215
                     /gene="ffh"
                     /locus_tag="CTDLC_0025"
                     /note="Signal peptide binding domain; Region: SRP_SPB;
                     pfam02978"
                     /db_xref="CDD:251653"
     gene            31275..31625
                     /gene="rpsP"
                     /locus_tag="CTDLC_0026"
                     /db_xref="GeneID:12388414"
     CDS             31275..31625
                     /gene="rpsP"
                     /locus_tag="CTDLC_0026"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="YP_005811958.1"
                     /db_xref="GI:385244114"
                     /db_xref="GeneID:12388414"
                     /translation="MALKIRLRQQGRKNHVVYRLVLADVESPRDGKYIELLGWYDPHS
                     EQNYQLKSERIFYWLNQGAELTEKAGALVKQGAPGVYAELMAKKVARRAVVRQKRRAY
                     RQRLAARKAEAAAK"
     misc_feature    31275..31592
                     /gene="rpsP"
                     /locus_tag="CTDLC_0026"
                     /note="30S ribosomal protein S16; Provisional; Region:
                     rpsP; PRK14522"
                     /db_xref="CDD:172988"
     gene            31641..32699
                     /gene="trmD"
                     /locus_tag="CTDLC_0027"
                     /db_xref="GeneID:12388415"
     CDS             31641..32699
                     /gene="trmD"
                     /locus_tag="CTDLC_0027"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (Guanine-N(1)-)-methyltransferase"
                     /protein_id="YP_005811959.1"
                     /db_xref="GI:385244115"
                     /db_xref="GeneID:12388415"
                     /translation="MEIDILSLFPDYFASPLQATILGRAIKQGALSVRSRDIREFGLG
                     KWKQVDDSPYNGEGMLLMAEPVVQAIRSIRRKKSKVIYLSPQGQLLSAKKSRELASCS
                     HLVLLCGHYEGIDERALTAEVDEEISIGDYVLTNGCAAALVLVDALARFIPGVLGNQE
                     SAEYDSLENGLLEGPQYTRPRVFEGESVPEVLLCGDHQKIADWRKQVSLERTRERRPD
                     LYLQYFYGNSACLSTQEDLPRIEVVSPKTFSVVLEVQDLRKAKKFYSRMFGKECWDGD
                     KLFLLGKTSLYLQQTKETRGPTTVFIELETDHDFVRFLKRWEILGGELGEQGTGGFPL
                     RQVFDLDGHIWVVSCVQK"
     misc_feature    31641..32696
                     /gene="trmD"
                     /locus_tag="CTDLC_0027"
                     /note="tRNA (guanine-N(1)-)-methyltransferase/unknown
                     domain fusion protein; Reviewed; Region: trmD; PRK01037"
                     /db_xref="CDD:234892"
     misc_feature    31641..32309
                     /gene="trmD"
                     /locus_tag="CTDLC_0027"
                     /note="tRNA-(guanine-N1)-methyltransferase [Translation,
                     ribosomal structure and biogenesis]; Region: TrmD;
                     COG0336"
                     /db_xref="CDD:223413"
     misc_feature    32385..32675
                     /gene="trmD"
                     /locus_tag="CTDLC_0027"
                     /note="This domain superfamily is found in a variety of
                     structurally related metalloproteins, including the type I
                     extradiol dioxygenases, glyoxalase I and a group of
                     antibiotic resistance proteins; Region: Glo_EDI_BRP_like;
                     cd06587"
                     /db_xref="CDD:211348"
     misc_feature    order(32385..32387,32397..32399,32466..32468,32499..32501,
                     32505..32507,32541..32543,32652..32654,32670..32672)
                     /gene="trmD"
                     /locus_tag="CTDLC_0027"
                     /note="active site"
                     /db_xref="CDD:211348"
     gene            32725..33090
                     /gene="rplS"
                     /locus_tag="CTDLC_0028"
                     /db_xref="GeneID:12388416"
     CDS             32725..33090
                     /gene="rplS"
                     /locus_tag="CTDLC_0028"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="YP_005811960.1"
                     /db_xref="GI:385244116"
                     /db_xref="GeneID:12388416"
                     /translation="MGNLIKELQDEQCRTDLADFCVGDTIRVATNISEGGKERVQVFQ
                     GTVMARKGGGAGETVSLHRVAYGEGMEKSFLLNSPKIVSIEVVKRGKVSRARLFYLRG
                     KTGKAAKVKELIGSRAAKK"
     misc_feature    32728..33066
                     /gene="rplS"
                     /locus_tag="CTDLC_0028"
                     /note="ribosomal protein L19, bacterial type; Region:
                     rplS_bact; TIGR01024"
                     /db_xref="CDD:130096"
     gene            33154..33807
                     /gene="rnhB"
                     /locus_tag="CTDLC_0029"
                     /db_xref="GeneID:12388417"
     CDS             33154..33807
                     /gene="rnhB"
                     /locus_tag="CTDLC_0029"
                     /EC_number="3.1.26.4"
                     /codon_start=1
                     /transl_table=11
                     /product="Ribonuclease HII"
                     /protein_id="YP_005811961.1"
                     /db_xref="GI:385244117"
                     /db_xref="GeneID:12388417"
                     /translation="MKSTVEQAMLFEEKSIFENQAIEQGYSQVAGVDEAGRGPLAGPV
                     VAGACILPRGKVFLGIDDSKKLTPKQRRYLYELLLEDPEVDCGVGVISVERIDEINIL
                     EATKEAMVQAIASLRSTPDFLLVDGLFLPHKVPSLKIIKGDARSVSIAAASIIAKEYR
                     DELMRKLHVEYPEYGFDKHKGYGTAAHLQALKHFGPCVYHRKSFSPVKESIQEGVCQ"
     misc_feature    33241..33771
                     /gene="rnhB"
                     /locus_tag="CTDLC_0029"
                     /note="Bacterial Ribonuclease HII-like; Region:
                     RNase_HII_bacteria_HII_like; cd07182"
                     /db_xref="CDD:260003"
     misc_feature    order(33250..33267,33343..33345,33451..33459,33529..33537,
                     33571..33576,33580..33582,33622..33624,33685..33693,
                     33697..33705,33763..33771)
                     /gene="rnhB"
                     /locus_tag="CTDLC_0029"
                     /note="RNA/DNA hybrid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:260003"
     misc_feature    order(33250..33255,33529..33531,33580..33582)
                     /gene="rnhB"
                     /locus_tag="CTDLC_0029"
                     /note="active site"
                     /db_xref="CDD:260003"
     gene            33798..34415
                     /gene="gmk"
                     /locus_tag="CTDLC_0030"
                     /db_xref="GeneID:12388418"
     CDS             33798..34415
                     /gene="gmk"
                     /locus_tag="CTDLC_0030"
                     /EC_number="2.7.4.8"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="YP_005811962.1"
                     /db_xref="GI:385244118"
                     /db_xref="GeneID:12388418"
                     /translation="MSVKVISPFSQDGVQCFPKLFIISAPAGAGKTTLTHMLQREFPD
                     AFEKTVSSTTRSARPGEVHGVDYLFVSEDDFKQSLDREDFLEWVFLFGTYYGTSKAEI
                     SRVLQKGKHCIAVIDVQGALALKKQMPAVTIFIQAPSQEELERRLNARDSEKDFQKKE
                     RLEHSAVEIAAASEFDYVVVNDDLITAYQVLRSIFIAEEHRMSHG"
     misc_feature    33849..34391
                     /gene="gmk"
                     /locus_tag="CTDLC_0030"
                     /note="Guanylate kinase; Region: Guanylate_kin; pfam00625"
                     /db_xref="CDD:250008"
     misc_feature    33855..34373
                     /gene="gmk"
                     /locus_tag="CTDLC_0030"
                     /note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
                     also known as guanylate kinase (GKase), catalyzes the
                     reversible phosphoryl transfer from adenosine triphosphate
                     (ATP) to guanosine monophosphate (GMP) to yield adenosine
                     diphosphate (ADP) and guanosine...; Region: GMPK; cd00071"
                     /db_xref="CDD:238026"
     misc_feature    order(33870..33872,33888..33890,33939..33941,33960..33962,
                     33969..33971,33996..33998,34065..34067,34080..34082)
                     /gene="gmk"
                     /locus_tag="CTDLC_0030"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238026"
     misc_feature    order(33870..33872,33888..33890)
                     /gene="gmk"
                     /locus_tag="CTDLC_0030"
                     /note="G-X2-G-X-G-K; other site"
                     /db_xref="CDD:238026"
     gene            34408..34710
                     /locus_tag="CTDLC_0031"
                     /db_xref="GeneID:12388419"
     CDS             34408..34710
                     /locus_tag="CTDLC_0031"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811963.1"
                     /db_xref="GI:385244119"
                     /db_xref="GeneID:12388419"
                     /translation="MARKDRLTNERLNKLFDSPFSLVNYVIKQAKNKIARGDVRSSNV
                     AIEALNFLDLYGIQSEYAERDDRERHLSATGERRREQGFGTSRRKDPSLYNWSDVK"
     gene            34710..36362
                     /gene="metG"
                     /locus_tag="CTDLC_0032"
                     /db_xref="GeneID:12388420"
     CDS             34710..36362
                     /gene="metG"
                     /locus_tag="CTDLC_0032"
                     /EC_number="6.1.1.10"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA synthetase"
                     /protein_id="YP_005811964.1"
                     /db_xref="GI:385244120"
                     /db_xref="GeneID:12388420"
                     /translation="MESSRILITSALPYANGPLHFGHITGAYLPADVYARFQRLQGKE
                     VLYICGSDEYGIAITLNAELAGMGYQEYVDMYHKLHKDTFKKLGISVDFFSRTTNTYH
                     PAIVQDFYRNLQERGLVENQVTEQLYSEEEGKFLADRYVVGTCPKCGFDRARGDECQQ
                     CGADYEARDLKEPRSKLTGAALSLRDTEHAYLHLERMKEDLLAFVQGIYLRPHMRNFV
                     TDYIEHLRPRAVTRDLSWGIPVPDLENKVFYVWFDAPIGYISGTMDWAASIGDPEAWK
                     KFWLDDTVTYAQFIGKDNTSFHAAIFPAMEIGQSLPYKKVDALVTSEFLLLEGFQFSK
                     SDGNFIDMDAFLETYSLDKLRYVLAAIAPETSDSEFSFQEFKTRCNSELVGKYGNFVN
                     RVLAFAVKNGCTELSSPQLEQKDLDFISKSQKLAKDAAEHYAQYSLRKACSTIMELAA
                     LGNGYFNDEAPWKLAKEGNWNRVRAILFCACYCQKLLALISYPIMPETALKILEMIAP
                     HSLDLGSQDPDRLQSLWTDSFFDYSEEKFSLKEPELLFTMVE"
     misc_feature    34716..36359
                     /gene="metG"
                     /locus_tag="CTDLC_0032"
                     /note="methionyl-tRNA synthetase; Reviewed; Region:
                     PRK12268"
                     /db_xref="CDD:237029"
     misc_feature    34722..35819
                     /gene="metG"
                     /locus_tag="CTDLC_0032"
                     /note="catalytic core domain of methioninyl-tRNA
                     synthetases; Region: MetRS_core; cd00814"
                     /db_xref="CDD:173907"
     misc_feature    order(34740..34745,34749..34751,34863..34865,35460..35462,
                     35469..35474,35481..35483,35589..35591,35601..35603)
                     /gene="metG"
                     /locus_tag="CTDLC_0032"
                     /note="active site"
                     /db_xref="CDD:173907"
     misc_feature    34767..34778
                     /gene="metG"
                     /locus_tag="CTDLC_0032"
                     /note="HIGH motif; other site"
                     /db_xref="CDD:173907"
     misc_feature    35700..35714
                     /gene="metG"
                     /locus_tag="CTDLC_0032"
                     /note="KMSKS motif; other site"
                     /db_xref="CDD:173907"
     misc_feature    35847..36227
                     /gene="metG"
                     /locus_tag="CTDLC_0032"
                     /note="Anticodon-binding domain of methionyl tRNA
                     synthetases; Region: Anticodon_Ia_Met; cd07957"
                     /db_xref="CDD:153411"
     misc_feature    order(35847..35849,35868..35873,35880..35885,35892..35897,
                     35904..35909,35916..35921,36066..36071,36075..36080,
                     36093..36095)
                     /gene="metG"
                     /locus_tag="CTDLC_0032"
                     /note="tRNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:153411"
     misc_feature    order(35868..35870,35880..35885,35892..35897,35904..35909,
                     35916..35921,36075..36077,36093..36095)
                     /gene="metG"
                     /locus_tag="CTDLC_0032"
                     /note="anticodon binding site; other site"
                     /db_xref="CDD:153411"
     gene            complement(36502..38742)
                     /gene="recD_1"
                     /locus_tag="CTDLC_0033"
                     /db_xref="GeneID:12388421"
     CDS             complement(36502..38742)
                     /gene="recD_1"
                     /locus_tag="CTDLC_0033"
                     /EC_number="3.1.11.5"
                     /codon_start=1
                     /transl_table=11
                     /product="Exodeoxyribonuclease V alpha chain"
                     /protein_id="YP_005811965.1"
                     /db_xref="GI:385244121"
                     /db_xref="GeneID:12388421"
                     /translation="MGCEEKLSGILELILPEDPLSDQTGYAFLRVPYKNSLVTVCGHL
                     PLSLFKIGSSVDLTGHWSVDASGALVFRFTSAATYSPDSGIIAYLNAQIKGVGPKLAQ
                     KIVSTFREDTLTVLDSCPSKLVEVDGISPARCEDFSKQLQEQRDLRHALLFLQRHGIA
                     IHYGLRLYKKYQNQTIEKVCQDPFLLAKEMYGIGFKTADLIATCLGVPLNSPNRIVAG
                     IQYSLDELQEEGHTCYPLNDFIVLVEKLLNEEAPEEIIRKEEIRTQIHFLSRQKTVYV
                     KELEQDTYIWSRQLFLAEQQIAIDIRRLLFSSKRIRSINTQEAILEVENLLDLKLEEK
                     QKEALHASSSQKIHIISGGPGTGKSTIIRAILSIFEKISSPKKIILAAPTGKAAKRMT
                     EITGKRTQTIHSLLQYDFKTLSFRKNHEDPIDCDLVIVDESGMIDTILLQRFLAALPD
                     HAILILIGDVHQLPSVGPGNVLKDLILSHHIEVTYLTKIFRQLQNSNIITNAHKVNQG
                     EFPVLNSSSGKKDFLFFQKEDPEEAIKHIIHLVSDFVPKKFGIFTKDIQVLAPMRKGV
                     LGILNLNRELKAALNPNKLFIQGKFHSFSTGDRVMQTRNNYNKEVFNGDIGYVTSIDL
                     STKSLIVCVDGRYISYSQAELNDLIPAYATSIHKYQGSETSCIILPIHTSHYVMLYRN
                     LLYTAITRGKKLVILVGTKKAVAIAVRNNKVQHRCTGLQQAMHSLLNKPTPLFSPYTI
                     CRPSLG"
     misc_feature    complement(36577..38724)
                     /gene="recD_1"
                     /locus_tag="CTDLC_0033"
                     /note="helicase, putative, RecD/TraA family; Region:
                     recD_rel; TIGR01448"
                     /db_xref="CDD:233418"
     misc_feature    complement(38314..38469)
                     /gene="recD_1"
                     /locus_tag="CTDLC_0033"
                     /note="Helix-hairpin-helix domain; Region: HHH_5;
                     pfam14520"
                     /db_xref="CDD:258660"
     misc_feature    complement(38044..38325)
                     /gene="recD_1"
                     /locus_tag="CTDLC_0033"
                     /note="Helix-hairpin-helix containing domain; Region:
                     HHH_4; pfam14490"
                     /db_xref="CDD:258630"
     misc_feature    complement(37267..37755)
                     /gene="recD_1"
                     /locus_tag="CTDLC_0033"
                     /note="AAA domain; Region: AAA_30; pfam13604"
                     /db_xref="CDD:257919"
     misc_feature    complement(36649..36963)
                     /gene="recD_1"
                     /locus_tag="CTDLC_0033"
                     /note="UvrD-like helicase C-terminal domain; Region:
                     UvrD_C_2; pfam13538"
                     /db_xref="CDD:257857"
     gene            complement(38990..40015)
                     /gene="ytfF"
                     /locus_tag="CTDLC_0034"
                     /db_xref="GeneID:12388422"
     CDS             complement(38990..40015)
                     /gene="ytfF"
                     /locus_tag="CTDLC_0034"
                     /codon_start=1
                     /transl_table=11
                     /product="Transporter, drug/metabolite exporter family"
                     /protein_id="YP_005811966.1"
                     /db_xref="GI:385244122"
                     /db_xref="GeneID:12388422"
                     /translation="MMSSPHPMSSSRNTPLGVFYSLLACFYWGMVFVIPSMLGNFADL
                     DIVLTRYSVFGICSLITILYKRSNIFKTVPFFLWKKGILWAFLINIAYYFGIAQAVRY
                     SGSAVTVIIAGLAPIAILFYSNIKKKMLSYSFLLSMSGIIVVGIILSNVSEFQSESSS
                     SLPLYLLGLGCVTAATSIWAGYIICNHDFLEQHSEISPDTWCHMLGISSLIICLPLII
                     LGDTFGITHVTRNFLFHTPLSERCLFIVLCSAMGIFSSSRAIAAWNKASLHLSTALLG
                     ALLIFEPIFGWILSYLCKREMPSFQEGLGFFLMLGASLCLLLAQKKASEQETPSETLI
                     TTESDAN"
     misc_feature    complement(39047..39982)
                     /gene="ytfF"
                     /locus_tag="CTDLC_0034"
                     /note="Permeases of the drug/metabolite transporter (DMT)
                     superfamily [Carbohydrate transport and metabolism / Amino
                     acid transport and metabolism / General function
                     prediction only]; Region: RhaT; COG0697"
                     /db_xref="CDD:223769"
     misc_feature    complement(39563..39877)
                     /gene="ytfF"
                     /locus_tag="CTDLC_0034"
                     /note="Multidrug resistance efflux transporter; Region:
                     EmrE; pfam13536"
                     /db_xref="CDD:257855"
     gene            complement(41092..42303)
                     /locus_tag="CTDLC_0036"
                     /db_xref="GeneID:12388423"
     CDS             complement(41092..42303)
                     /locus_tag="CTDLC_0036"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811967.1"
                     /db_xref="GI:385244123"
                     /db_xref="GeneID:12388423"
                     /translation="MFPIECHTLQTSFKQVLSLVAEKITTKAFVIFSVLFSLIIGFIA
                     SCGFLFAGPPAFIASGLCFALLVSVVSFFGCQKLIPYGIQHLMSYVKSIPSLSSSLID
                     FLKTESKSISSLYPNPGLKECFKGASPKYKKFFFDHPEKLLSAAFTDWTPQIIPSDSG
                     QPRTIILSHSSLPFSLTLSTLDFETLHTHLIKSNALTCRVGYAHQLPSGNPVMREAKE
                     GVLQQHYDTGNETFFISIQESKQLQQEELFKKLFSHYAQITEHNLSNEILLLEPLKTP
                     LHTPKARTLELLALFCALEQLRYTKVADWRTKKLAPIFPLDYEDFFTLFMKKQHYTLP
                     GNVSNMRILSPVRPVSETALTTIIISGLEEEDKLGLLGQVQPFLFDAEEAHPQRGESI
                     LIQNVLDDITQ"
     gene            complement(42730..42801)
                     /locus_tag="CTDLC_r037"
                     /db_xref="GeneID:12388424"
     tRNA            complement(42730..42801)
                     /locus_tag="CTDLC_r037"
                     /product="tRNA-Asn"
                     /db_xref="GeneID:12388424"
     gene            complement(42865..43215)
                     /locus_tag="CTDLC_0038"
                     /db_xref="GeneID:12388425"
     CDS             complement(42865..43215)
                     /locus_tag="CTDLC_0038"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005811968.1"
                     /db_xref="GI:385244124"
                     /db_xref="GeneID:12388425"
                     /translation="MSMASKKQTSWFRYMEECVIRSWWLILCLLGGGFVYDRAISQLC
                     TQELRLQQRMFHLKSHLKEALEKQQELSTHLASWDDPKVIELALIHKLGLVPKGYEKI
                     CFQNSQKTKRNHRK"
     misc_feature    complement(<42895..43038)
                     /locus_tag="CTDLC_0038"
                     /note="Aspartate aminotransferase (AAT) superfamily (fold
                     type I) of pyridoxal phosphate (PLP)-dependent enzymes.
                     PLP combines with an alpha-amino acid to form a compound
                     called a Schiff base or aldimine intermediate, which
                     depending on the reaction, is the...; Region: AAT_I;
                     cl18945"
                     /db_xref="CDD:267298"
     gene            complement(43231..43803)
                     /gene="dcd"
                     /locus_tag="CTDLC_0039"
                     /db_xref="GeneID:12388426"
     CDS             complement(43231..43803)
                     /gene="dcd"
                     /locus_tag="CTDLC_0039"
                     /EC_number="3.5.4.13"
                     /codon_start=1
                     /transl_table=11
                     /product="Deoxycytidine triphosphate deaminase"
                     /protein_id="YP_005811969.1"
                     /db_xref="GI:385244125"
                     /db_xref="GeneID:12388426"
                     /translation="MGIKEDNWIRKMAIEEGMIEPFADSQVKLHPETGEKLISYGLSS
                     YGYDLRISREFKVFTNVYNSLVDPKCFTEDALISIVDDVCIIPPNSFALARSVEYFRI
                     PRNVLTVCIGKSTYARCGLIVNVTPFEPEWEGYVTIEISNTTPLPAKVYANEGIAQVL
                     FFEGDATCDVSYAERQGKYQKQQGITIPFV"
     misc_feature    complement(43321..43668)
                     /gene="dcd"
                     /locus_tag="CTDLC_0039"
                     /note="Trimeric dUTP diphosphatases; Region:
                     trimeric_dUTPase; cd07557"
                     /db_xref="CDD:143638"
     misc_feature    complement(order(43330..43332,43342..43344,43351..43365,
                     43375..43377,43381..43383,43387..43389,43393..43395,
                     43414..43416,43423..43425,43435..43443,43456..43473,
                     43477..43479,43525..43527,43531..43536,43549..43551,
                     43666..43668))
                     /gene="dcd"
                     /locus_tag="CTDLC_0039"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143638"
     misc_feature    complement(order(43393..43398,43408..43410,43417..43425,
                     43459..43467))
                     /gene="dcd"
                     /locus_tag="CTDLC_0039"
                     /note="active site"
                     /db_xref="CDD:143638"
     gene            43891..44043
                     /locus_tag="CTDLC_003901"
                     /db_xref="GeneID:12388427"
     CDS             43891..44043
                     /locus_tag="CTDLC_003901"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811970.1"
                     /db_xref="GI:385244126"
                     /db_xref="GeneID:12388427"
                     /translation="MQLYEKTQLFNAFVQRFFSLNSLLYREKEGLEIGESLLTSAAGG
                     CQNTIS"
     gene            44085..45089
                     /gene="ruvB"
                     /locus_tag="CTDLC_0040"
                     /db_xref="GeneID:12388428"
     CDS             44085..45089
                     /gene="ruvB"
                     /locus_tag="CTDLC_0040"
                     /note="protein RuvB"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction DNA helicase"
                     /protein_id="YP_005811971.1"
                     /db_xref="GI:385244127"
                     /db_xref="GeneID:12388428"
                     /translation="MTHKISVLHQDKKFDFSLRPKKLTEFCGQKQLKERLDLFLRAAV
                     QRNEVPGHCLFYGPPGLGKTSLAHIMANTIGKGLVIASGPQLLKPSDLIGLLTGLQEG
                     DIFFIDEIHRMGKAAEEYLYPAMEDFKVDITLDSGPGARSVRLDLAPFTLVGATTRAG
                     MLSEPLRTRFAFTGRVDYYTDEDLVSILSRSSQLLAIEANQETLLEIARRARGTPRLA
                     NNLLRWVRDFAQMREGNCINSAVAEKALAMLLIDNLGLNEIDIKLLSVMIDFYQGGPV
                     GMKTLAMAVGEDVRTLEDMYEPFLILKGLVQRTARGRVATPLAYEHLNRNPKDRWGEE
                     "
     misc_feature    44085..45068
                     /gene="ruvB"
                     /locus_tag="CTDLC_0040"
                     /note="Holliday junction resolvasome, helicase subunit
                     [DNA replication, recombination, and repair]; Region:
                     RuvB; COG2255"
                     /db_xref="CDD:225164"
     misc_feature    44166..44594
                     /gene="ruvB"
                     /locus_tag="CTDLC_0040"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    44253..44276
                     /gene="ruvB"
                     /locus_tag="CTDLC_0040"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(44256..44279,44406..44408,44553..44555)
                     /gene="ruvB"
                     /locus_tag="CTDLC_0040"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    44394..44411
                     /gene="ruvB"
                     /locus_tag="CTDLC_0040"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    44589..44591
                     /gene="ruvB"
                     /locus_tag="CTDLC_0040"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    44838..45062
                     /gene="ruvB"
                     /locus_tag="CTDLC_0040"
                     /note="Holliday junction DNA helicase ruvB C-terminus;
                     Region: RuvB_C; pfam05491"
                     /db_xref="CDD:253217"
     gene            45025..45903
                     /locus_tag="CTDLC_0041"
                     /db_xref="GeneID:12388429"
     CDS             45025..45903
                     /locus_tag="CTDLC_0041"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811972.1"
                     /db_xref="GI:385244128"
                     /db_xref="GeneID:12388429"
                     /translation="MQPLWHMNILTGTLRTGGEKNKVKKLNLLVLLGVFCGVSGVGDA
                     DVKVSDALLQSILVEPKIRVLLLSESTTALIEAKGAFSVFGDGELLRVSSQGQRCAAH
                     ALYGGIRWGENYPNVECLKIEPLDGAASLFVNGIQYRGAIYIHRTDRSCLFIVNELAV
                     EDYLKSTLSVKYLKELDKEALSACVILERTALYERLLAGNSHSFWHVNAQEDRYGGFG
                     VTSQFYGVEEAVDWTSRLVLDNPEGLVFNADYLLRANVDRLAIEGYNARQILEKFYKD
                     ADLVVIESWEDDCKGA"
     gene            complement(45965..48037)
                     /gene="glgX"
                     /locus_tag="CTDLC_0042"
                     /db_xref="GeneID:12388430"
     CDS             complement(45965..48037)
                     /gene="glgX"
                     /locus_tag="CTDLC_0042"
                     /EC_number="3.2.1.68"
                     /codon_start=1
                     /transl_table=11
                     /product="Isoamylase"
                     /protein_id="YP_005811973.1"
                     /db_xref="GI:385244129"
                     /db_xref="GeneID:12388430"
                     /translation="MCLSPSLLFISSVRFLLNLLVLVFMESLSVRSTIPLPLGAKKLS
                     ADRYRFSLFSSQAQQVTLVLLDPLSEIHEIPLSSTDHRTGAIWHIEIAGISSEWSYAY
                     KLRGTDLSSQKFATDSYIADPYSKNIYSPQLFGSPKQEKDYAFSYLKHEDFDWEGDTP
                     LHLPKENYFIYEMHVRSFTRDPSSQVSHPGTFLGIIEKIDHLKQLGVHAVELLPIFEF
                     DETVHPFKNQDFPHLCNYWGYSSVNFFCPSRRYTYGADPCAPAREFKTLVKALHRAGI
                     EVILDVVFNHTGFEGTSCPLPWIDLESYYMVNDHGDLMNFSGCGNTVNTNTPTTLKWI
                     LDALRYWVQEMHVDGFRFDLASVFSRDPQGVPLPLTPILQAISSDSILSETKLIAEPW
                     DAGGLYQLGHFPSISTRWSEWNGCYRDHVKAFLNGDAHQVSSFASRISGSHDIYPNGK
                     PTNSINYICSHDGFTLYDTVAYNDKHNEENGEYNRDGTSANYSYNFGCEGETTDPTIC
                     ALRERQMKNFFLALFLSQGIPMIQSGDEYGHTAYGNNNHWCLDTKINYFLWDRLAERK
                     ELFSFLCQVIALRKAYTELFNTSFLSEDTITWLNTKGSPREWGADHYLAFELKHLNYS
                     LFVAFYSGNERIEISLPKPRKEHLAYEKIVDSTTGFFSQILSPKLSLEPYSSLVAISR
                     RKTSLESR"
     misc_feature    complement(45977..47950)
                     /gene="glgX"
                     /locus_tag="CTDLC_0042"
                     /note="Type II secretory pathway, pullulanase PulA and
                     related glycosidases [Carbohydrate transport and
                     metabolism]; Region: PulA; COG1523"
                     /db_xref="CDD:224440"
     misc_feature    complement(47522..47932)
                     /gene="glgX"
                     /locus_tag="CTDLC_0042"
                     /note="N-terminal Early set domain associated with the
                     catalytic domain of Glycogen debranching enzyme and
                     bacterial isoamylase (also called glycogen
                     6-glucanohydrolase); Region: E_set_GDE_Isoamylase_N;
                     cd02856"
                     /db_xref="CDD:199886"
     misc_feature    complement(46292..47581)
                     /gene="glgX"
                     /locus_tag="CTDLC_0042"
                     /note="Alpha amylase catalytic domain found in glycogen
                     debranching enzymes; Region: AmyAc_Glg_debranch; cd11326"
                     /db_xref="CDD:200465"
     misc_feature    complement(order(46652..46657,46868..46870,46976..46981,
                     46985..46987))
                     /gene="glgX"
                     /locus_tag="CTDLC_0042"
                     /note="active site"
                     /db_xref="CDD:200465"
     misc_feature    complement(order(46652..46654,46868..46870,46979..46981))
                     /gene="glgX"
                     /locus_tag="CTDLC_0042"
                     /note="catalytic site [active]"
                     /db_xref="CDD:200465"
     gene            complement(48083..48586)
                     /locus_tag="CTDLC_0043"
                     /db_xref="GeneID:12388431"
     CDS             complement(48083..48586)
                     /locus_tag="CTDLC_0043"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811974.1"
                     /db_xref="GI:385244130"
                     /db_xref="GeneID:12388431"
                     /translation="MSRQNAEENLKNFAKELKLPDVAFDQNNTCILFVDGEFSLHLTY
                     EEHSDRLYVYAPLLDGLPDNPQRRLALYEKLLEGSMLGGQMAGGGVGVATKEQLILMH
                     CVLDMKYAETNLLKAFAQLFIETVVKWRTVCSDISAGREPTVDTMPQMPQGGGGGIQP
                     PPAGIRA"
     misc_feature    complement(48197..48559)
                     /locus_tag="CTDLC_0043"
                     /note="Tir chaperone protein (CesT) family; Region: CesT;
                     pfam05932"
                     /db_xref="CDD:253463"
     gene            49052..49525
                     /gene="ssb"
                     /locus_tag="CTDLC_0044"
                     /db_xref="GeneID:12388432"
     CDS             49052..49525
                     /gene="ssb"
                     /locus_tag="CTDLC_0044"
                     /codon_start=1
                     /transl_table=11
                     /product="ssDNA-binding protein"
                     /protein_id="YP_005811975.1"
                     /db_xref="GI:385244131"
                     /db_xref="GeneID:12388432"
                     /translation="MLFGYLVGFLAADPEERMTSGGKRVVVLRLGVKSRVGSKDETVW
                     CRCNIWNNRYDKMLPYLKKGSSVIVAGELSLESYVGRDGSPQASISVSVDTLKFNSGS
                     SRPDARGSDEGRQRANDNVSIGFDGESLDTDSALDKEVYAGFGEDQQYASEDVPF"
     misc_feature    49052..49522
                     /gene="ssb"
                     /locus_tag="CTDLC_0044"
                     /note="Single-stranded DNA-binding protein [DNA
                     replication, recombination, and repair]; Region: Ssb;
                     COG0629"
                     /db_xref="CDD:223702"
     misc_feature    49067..49345
                     /gene="ssb"
                     /locus_tag="CTDLC_0044"
                     /note="SSB_OBF: A subfamily of OB folds similar to the OB
                     fold of ssDNA-binding protein (SSB). SSBs bind with high
                     affinity to ssDNA. They bind to and protect ssDNA
                     intermediates during DNA metabolic pathways. All bacterial
                     and eukaryotic SSBs studied to date...; Region: SSB_OBF;
                     cd04496"
                     /db_xref="CDD:239942"
     misc_feature    order(49067..49072,49145..49153,49178..49180,49184..49186,
                     49247..49249,49274..49276,49307..49309,49316..49318)
                     /gene="ssb"
                     /locus_tag="CTDLC_0044"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:239942"
     misc_feature    order(49076..49084,49100..49102,49130..49132,49151..49156,
                     49172..49177,49181..49183,49187..49189,49193..49195,
                     49199..49201,49238..49243,49265..49267,49271..49273,
                     49277..49282,49319..49321,49325..49327)
                     /gene="ssb"
                     /locus_tag="CTDLC_0044"
                     /note="ssDNA binding site [nucleotide binding]; other
                     site"
                     /db_xref="CDD:239942"
     misc_feature    order(49247..49249,49253..49255,49259..49261,49340..49342)
                     /gene="ssb"
                     /locus_tag="CTDLC_0044"
                     /note="tetramer (dimer of dimers) interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239942"
     gene            49866..51365
                     /gene="pepA"
                     /locus_tag="CTDLC_0045"
                     /db_xref="GeneID:12388433"
     CDS             49866..51365
                     /gene="pepA"
                     /locus_tag="CTDLC_0045"
                     /EC_number="3.4.11.1"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol aminopeptidase"
                     /protein_id="YP_005811976.1"
                     /db_xref="GI:385244132"
                     /db_xref="GeneID:12388433"
                     /translation="MVLLYSQASWDKRSKADALVLPFWMKNSKAQEAAVVDEDYKLVY
                     QNALSNFSGKKGETAFLFGNDHTKEQKIVLLGLGKSEEVSGTTVLEAYAQATTVLRKA
                     KCKTVNILLPTISQLRFSVEEFLTNLAAGVLSLNYNYPTYHKVDTSLPFLEKVTVMGI
                     VSKVGDKIFRKEESLFEGVYLTRDLVNTNADEVTPEKLAAVAKDLAGEFASLDVKILD
                     RKAILKEKMGLLAAVAKGAAVEPRFIVLDYQGKPKSKDRTVLIGKGVTFDSGGLDLKP
                     GKAMITMKEDMAGAATVLGIFSALASLELPINVTGIIPATENAIGSAAYKMGDVYVGM
                     TGLSVEIGSTDAEGRLILADAISYALKYCNPTRIIDFATLTGAMVVSLGESVAGFFAN
                     NDVLARDLAEASSETGEALWRMPLVEKYDQALHSDIADMKNIGSNRAGSITAALFLQR
                     FLEDNPVAWAHLDIAGTAYHEKEELPYPKYATGFGVRCLIHYMEKFLSK"
     misc_feature    49866..51350
                     /gene="pepA"
                     /locus_tag="CTDLC_0045"
                     /note="multifunctional aminopeptidase A; Provisional;
                     Region: PRK00913"
                     /db_xref="CDD:234863"
     misc_feature    49911..51341
                     /gene="pepA"
                     /locus_tag="CTDLC_0045"
                     /note="Cytosol aminopeptidase family, N-terminal and
                     catalytic domains.  Family M17 contains zinc- and
                     manganese-dependent exopeptidases ( EC  3.4.11.1),
                     including leucine aminopeptidase. They catalyze removal of
                     amino acids from the N-terminus of a protein and...;
                     Region: Peptidase_M17; cd00433"
                     /db_xref="CDD:238247"
     misc_feature    order(50010..50012,50049..50051,50076..50078,50121..50123,
                     50424..50426,50430..50438,50571..50573,50577..50579,
                     50664..50666,50682..50684,50697..50699,50706..50708,
                     50715..50720,50814..50816,50820..50831,50835..50837,
                     50841..50855,50871..50873,50877..50879,50889..50891,
                     51000..51014,51021..51023,51099..51104,51108..51110,
                     51123..51125,51129..51134,51147..51149,51153..51155,
                     51180..51185,51189..51191,51300..51302)
                     /gene="pepA"
                     /locus_tag="CTDLC_0045"
                     /note="interface (dimer of trimers) [polypeptide binding];
                     other site"
                     /db_xref="CDD:238247"
     misc_feature    order(50652..50654,50667..50669,50688..50690,50721..50723,
                     50898..50900,50904..50906,50910..50912,50985..50987)
                     /gene="pepA"
                     /locus_tag="CTDLC_0045"
                     /note="Substrate-binding/catalytic site; other site"
                     /db_xref="CDD:238247"
     misc_feature    order(50652..50654,50667..50669,50721..50723,50898..50900,
                     50904..50906)
                     /gene="pepA"
                     /locus_tag="CTDLC_0045"
                     /note="Zn-binding sites [ion binding]; other site"
                     /db_xref="CDD:238247"
     gene            51963..52115
                     /gene="hctB"
                     /locus_tag="CTDLC_0046"
                     /db_xref="GeneID:12388434"
     CDS             51963..52115
                     /gene="hctB"
                     /locus_tag="CTDLC_0046"
                     /codon_start=1
                     /transl_table=11
                     /product="Histone H1-like protein HC2"
                     /protein_id="YP_005811977.1"
                     /db_xref="GI:385244133"
                     /db_xref="GeneID:12388434"
                     /translation="MKKHKHTAACGRVAASGVKVCASAAKRKTNPNRSRTAHSWRQQL
                     MKLVAR"
     misc_feature    <51963..52112
                     /gene="hctB"
                     /locus_tag="CTDLC_0046"
                     /note="Histone H1-like nucleoprotein HC2; Region: HC2;
                     cl19298"
                     /db_xref="CDD:267651"
     gene            52177..53214
                     /locus_tag="CTDLC_0047"
                     /db_xref="GeneID:12388435"
     CDS             52177..53214
                     /locus_tag="CTDLC_0047"
                     /EC_number="2.7.7.7"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="YP_005811978.1"
                     /db_xref="GI:385244134"
                     /db_xref="GeneID:12388435"
                     /translation="MYLLAESKCLKKIKSGNKKNNPRIIGFWRWIMGNSQNSIHITST
                     KDFVQYIERERFRVIVIGSSSLEDKDIFSELYISGRKSFFDGQRLLQQELLSWTDHFG
                     LFASQETIGIYQAEKMSSSLQEFIIDYTRHPNPNLTLFLFTNKAELFSSLSSKLSNAL
                     CLSLFGEYFAERDARIAQVLIKRSKESQLSCSLGVAKIFVSKFPQTGLFEILSEFQKL
                     ICQMGDKESIEASDIQSFVEKKEAISLWKLRDALLRKDRVAAHSLMRSLVSDMGEEPL
                     AILNFLRSQYLLGLRAVAEQSKERKTQIFIAAGEPALLNGLNLFFHTESLIKNNFQDP
                     MLSLEMLVSRL"
     misc_feature    52270..53211
                     /locus_tag="CTDLC_0047"
                     /note="DNA polymerase III, delta subunit [DNA replication,
                     recombination, and repair]; Region: HolA; COG1466"
                     /db_xref="CDD:224383"
     misc_feature    52288..53211
                     /locus_tag="CTDLC_0047"
                     /note="hypothetical protein; Provisional; Region:
                     PRK05907"
                     /db_xref="CDD:235643"
     gene            53303..54022
                     /gene="yraL"
                     /locus_tag="CTDLC_0048"
                     /db_xref="GeneID:12388436"
     CDS             53303..54022
                     /gene="yraL"
                     /locus_tag="CTDLC_0048"
                     /codon_start=1
                     /transl_table=11
                     /product="Tetrapyrrole (Corrin/Porphyrin) methylase family
                     protein"
                     /protein_id="YP_005811979.1"
                     /db_xref="GI:385244135"
                     /db_xref="GeneID:12388436"
                     /translation="MAMALYLLPNTLGSKRSEDLPFSVGEIVRNKIQGLIVESDRGGR
                     LFLSLWKVEEPHRFPLAVMSKNDTSVKACDFYLEPILKKQESWGVISDAGLPCIADPG
                     AKLVRRARTLGIPVHAVSGPCSITQALMLSGLPGQNFTFHGYLPQNPKERSRYLRSCS
                     GKSHTQICIETPYRNPYTFDALLDQLPDHGELCVAIDLMGDQEYVSMRSIAVWNQSSD
                     IEEVCERLKKVPAIFLFITSF"
     misc_feature    53315..54007
                     /gene="yraL"
                     /locus_tag="CTDLC_0048"
                     /note="Uncharacterized subfamily of the tetrapyrrole
                     methylase family similar to ribosomal RNA small subunit
                     methyltransferase I (RsmI); Region: RsmI_like; cd11649"
                     /db_xref="CDD:212508"
     misc_feature    order(53336..53338,53579..53587,53594..53599,53669..53674,
                     53807..53809,53885..53887,53891..53896,53990..53998)
                     /gene="yraL"
                     /locus_tag="CTDLC_0048"
                     /note="putative SAM binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:212508"
     misc_feature    order(53360..53371,53375..53377,53585..53602,53609..53614,
                     53618..53623,53654..53656,53660..53671,53675..53680,
                     53687..53692,53717..53731)
                     /gene="yraL"
                     /locus_tag="CTDLC_0048"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212508"
     gene            54113..55585
                     /locus_tag="CTDLC_0049"
                     /db_xref="GeneID:12388437"
     CDS             54113..55585
                     /locus_tag="CTDLC_0049"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811980.1"
                     /db_xref="GI:385244136"
                     /db_xref="GeneID:12388437"
                     /translation="MNKKIIKERVSSSVPSTPSDQPADPTNPVTKMLFECKLSQNQGD
                     ASADVDAMVTTAHVKLDAKNQQVRQVAKGEEDQNVIVLSQLEGYLQKGSRSIAGLFLP
                     TSGGPMVGDINMGTSPGNTIKGLPSSWGSAMFLGNEYAASVGIVQDVVGEHGARLDDL
                     IERITKYSGSGEGSMTKLLEDLGSPKESQSGQTPSVTLEKPTDAKWLLLSAKNAMTGT
                     LRFEKKQGALPTTPDPTITNLKARGLGTIGTATPTDKLQNIVSVADLTTILKDLQENA
                     PSEGTGSDTGSDVGSGSGSGTDSGSGGVAGVSVSAATTSTFPEWTGQEVPYLVEQSPD
                     SGSGSPSVQNPLKSSNADNYIKKDNGTYSLLRRGLYLITFAYEFSSPTQNGAVTCTGT
                     LRKTTTPESGDVGAQPTSGDATAPTDPEPSPAFSVVGSSDGKTVVGSAYILVPGDKAL
                     SEHTLTLALTTNENTEVNPTSVTDPASKSYVAISYMGAGY"
     misc_feature    <54245..54439
                     /locus_tag="CTDLC_0049"
                     /note="Ribosomal protein L1.  The L1 protein, located near
                     the E-site of the ribosome, forms part of the L1 stalk
                     along with 23S rRNA.  In bacteria and archaea, L1
                     functions both as a ribosomal protein that binds rRNA, and
                     as a translation repressor that binds...; Region:
                     Ribosomal_L1; cl00322"
                     /db_xref="CDD:260353"
     gene            complement(55644..57254)
                     /locus_tag="CTDLC_0050"
                     /db_xref="GeneID:12388438"
     CDS             complement(55644..57254)
                     /locus_tag="CTDLC_0050"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811981.1"
                     /db_xref="GI:385244137"
                     /db_xref="GeneID:12388438"
                     /translation="MNDTKNNISSSFWNPNKVVTKVLLKVSETGIESTPGIVKHNQLI
                     TQSENPTDPTDAVTFKYLKENYTKENDPNPGFLPTTGGTMTGDIDMQGNNVTDIVMYT
                     NGQQNPTDDSAVTIGYLNEKADEIKSNDQITTAVAGLSNINSQISTLHQLLGIAEDPD
                     TVTNPDLLKTSGGTVYEDIDMSSNTVSDLGTPTNKDTKSAINVEFVQAKITSPQMAFL
                     KNNDTNLSNITVSEYFNWLQDPTQAPTPEPDPDPEPAPEPEPDTSDSSGSGSENPADP
                     APTNPSDSNAQNNPTPSSNGATASIRKLAATTTTVPTDTEIAPAAEDPNLPNTTFSEK
                     SPLWEEFFSFSDSSRSEMVIQKTGILTFSMQGTWENPSSSQTPSTDPISLELTVTPPT
                     TDTPPESPPSPPEAPAPEATPSPTNNNLTASITKTFSRKYNLSATPSPTPTTPTEPTT
                     ITKTLSLSSGQSCTLQIPVQATRSVLKLKYVNPNNNSSGGSSGSGGSSQPETTPTGIT
                     LQSFSWSLVLTPGEITKATSTPSTPSQP"
     gene            complement(57358..58920)
                     /locus_tag="CTDLC_0051"
                     /db_xref="GeneID:12388439"
     CDS             complement(57358..58920)
                     /locus_tag="CTDLC_0051"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811982.1"
                     /db_xref="GI:385244138"
                     /db_xref="GeneID:12388439"
                     /translation="MNKKERINKKNASTKFQRSTPTRALLSIGSQQLSSFTKLSFDGQ
                     AKLTGVATPTRDTDVVPLQYLQARYLSKNDPNPGYLPIHGGNMTGNINMGTHSVFNLK
                     QPEKPKIELPSETDKPKDPREEDGFAEKTAEEQEQEIKEYNTKLAEYQKKIDDYNAAW
                     EAFYSEAATVKYVKGIVDKILNNDKLSTALNSATEVEKKIALAQKALGIEITINPDAD
                     TNPDTDQETPDPAPVADTEEKESPPLSYNDLPSVIKNSQFVVTQSQNKITGDLKMTNA
                     QIANIKTPDTGDSNYAANVTYLESKLKQPQRAFLSNTLPTESSSSISLNGHIPWLSTT
                     NGSSSPAEPDFKSKLADQCFDTSSQENLKVKTAGLLVLSVRGTWSPTTSPITNGSTPT
                     PTTISVNLTVTPDNSSRTNTSSSGSDSSGDASATTLTIPLTLYSGESVQLQLPITTTS
                     SVKIATTTSQTSNGGSDTSSQITLSSWSWEAALYPTDVTVTNKTTPPTTETPSSPSPS
                     SPNSESTEGQTP"
     gene            complement(58974..60110)
                     /gene="hemN_1"
                     /locus_tag="CTDLC_0052"
                     /db_xref="GeneID:12388440"
     CDS             complement(58974..60110)
                     /gene="hemN_1"
                     /locus_tag="CTDLC_0052"
                     /EC_number="1.3.99.22"
                     /codon_start=1
                     /transl_table=11
                     /product="Oxygen-independent coproporphyrinogen-III
                     oxidase"
                     /protein_id="YP_005811983.1"
                     /db_xref="GI:385244139"
                     /db_xref="GeneID:12388440"
                     /translation="MNGKTPLALYIHIPFCSKKCHYCSFYTIPYKEELMRSYCEAVIK
                     EGLKKLAPLRCSHYIDTVFFGGGTPSLVPPALIQDILVALEAQHATEITLEANPENLS
                     LEYIQALALTSINRISIGVQTFNDPLLKLLGRTHSSSKAIEAFMLCSQYGFSNVSADL
                     IYGLPTQSISDFIVDLHQAISLPIQHISIYNLTIDPHTSFYKHRKRILPSIADDDSLA
                     EMALAAEELLENQGFTRYELASYAKNQAASKHNTYYWTAKPFLGLGVSASQYLHGIRS
                     KNLSRISHYLRAAHQHLPTLESMEELPPNERIKETLALRLRLCDPIPFGVFPQELIDE
                     ILMHPSIGSLFTKDDKAFSLNKKGRLFHDSIAEEIMASSFSFSK"
     misc_feature    complement(59001..60110)
                     /gene="hemN_1"
                     /locus_tag="CTDLC_0052"
                     /note="coproporphyrinogen III oxidase; Provisional;
                     Region: PRK06294"
                     /db_xref="CDD:180518"
     misc_feature    complement(59484..60065)
                     /gene="hemN_1"
                     /locus_tag="CTDLC_0052"
                     /note="Radical SAM superfamily. Enzymes of this family
                     generate radicals by combining a 4Fe-4S cluster and
                     S-adenosylmethionine (SAM) in close proximity. They are
                     characterized by a conserved CxxxCxxC motif, which
                     coordinates the conserved iron-sulfur cluster; Region:
                     Radical_SAM; cd01335"
                     /db_xref="CDD:100105"
     misc_feature    complement(order(59535..59540,59628..59630,59751..59753,
                     59820..59828,59907..59912,59916..59918,60039..60047,
                     60051..60053,60057..60059,60063..60065))
                     /gene="hemN_1"
                     /locus_tag="CTDLC_0052"
                     /note="FeS/SAM binding site; other site"
                     /db_xref="CDD:100105"
     misc_feature    complement(59031..59207)
                     /gene="hemN_1"
                     /locus_tag="CTDLC_0052"
                     /note="HemN C-terminal domain; Region: HemN_C; pfam06969"
                     /db_xref="CDD:253997"
     gene            complement(60100..60597)
                     /locus_tag="CTDLC_0053"
                     /db_xref="GeneID:12388441"
     CDS             complement(60100..60597)
                     /locus_tag="CTDLC_0053"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811984.1"
                     /db_xref="GI:385244140"
                     /db_xref="GeneID:12388441"
                     /translation="MALRGFPVSIIEQDYLRMKSERLKKLESELHDLTQWMQLGLVPK
                     KEIERHQEEIRLLESKILEEKERLQLLKESGEIKEYVTPRRTPAKTIYPDGPSVSDVE
                     FVESSDTEVDLDAGDTIEIDLGDEAREESGNELDYSSEDDEDPFSDRNRWRRGGIIDP
                     DANEW"
     gene            60878..63595
                     /gene="sucA"
                     /locus_tag="CTDLC_0054"
                     /db_xref="GeneID:12388442"
     CDS             60878..63595
                     /gene="sucA"
                     /locus_tag="CTDLC_0054"
                     /EC_number="1.2.4.2"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="YP_005811985.1"
                     /db_xref="GI:385244141"
                     /db_xref="GeneID:12388442"
                     /translation="MDSDFARHVHSSDIDWIESLFERFEKHEPMDSSWKYFFEGYQVG
                     KTEGSPTESSHDQVFTSLQEKKAHSLLMIYRYYGYLQGQVSPISSSEESSLVTEKVRN
                     FDPQEEIPSLGLLPQSYVRIADFIQVLKEKYCRSIAVETLNCSPEIQEYIWKLMEGEK
                     PSLTKEVLLARYRDVKRAVAFEEFLQVKFTGQKRFSLEGGESLVPMLEHLIACGVKQG
                     INRYVMGMPHRGRLNVLANIFGKPYRQIFMEFEDAPQIRGLETVGDVKYHKGYVANRP
                     EQNVMMALLPNPSHLESVDPVVEGAVAAIQHQGEAGKEQACLAVLMHGDAALAGQGVV
                     YETFQLSGIPGYSTEGTVHIVVNNQMGFTAQPRESRSTPYCTDIAKMMGIPVFRVNGE
                     DILACLQVMEYAIHIRERFHCDVIIDLCCYRKYGHNESDDPFVTAPFLYEEIKKKKQG
                     SELFKEILLHHPEWNISSDELERIDTEIAHVLNQEYASLKDPGVERLDKKECMHCTRM
                     AAGELLVDNVDTSLDKEALFDLSAKLCDIPEHFSPHAKIRSLLNKRMSMADGEIGYDW
                     GMAEEVAFASLLQEGFSLRLSGQDSIRGTFSQRQLVWTDVQTGDTFSPLYHLSPSQGS
                     VELYNSPLSEYAVLGFEYGYAQQAEKTLVIWEAQFGDFSNGAQIIFDQYISSGIQKWD
                     LHSDVVVLLPHGYEGQGPEHSSARIERYLQLASDWNFQVVLPSTPVQYFRILREHTKR
                     DLSLPLIIFSPKMLLRHPQCVSSIAEFGMKGGFKPFLEDENPNYHAKVLVLCSGKIYY
                     DYRASLPKDLEYRFACIRVESLYPLYLEDLLVLISKYTEVHHYVWLQEEPQNMGAFSY
                     FALATDEIFPSKLQCVCRPRSSSTATGSASLSQKELSTLMETLFSIGRE"
     misc_feature    60878..63583
                     /gene="sucA"
                     /locus_tag="CTDLC_0054"
                     /note="2-oxoglutarate dehydrogenase complex, dehydrogenase
                     (E1) component, and related enzymes [Energy production and
                     conversion]; Region: SucA; COG0567"
                     /db_xref="CDD:223641"
     misc_feature    61418..62200
                     /gene="sucA"
                     /locus_tag="CTDLC_0054"
                     /note="Thiamine pyrophosphate (TPP) family, E1 of
                     OGDC-like subfamily, TPP-binding module; composed of
                     proteins similar to the E1 component of the 2-oxoglutarate
                     dehydrogenase multienzyme complex (OGDC). OGDC catalyzes
                     the oxidative decarboxylation of...; Region:
                     TPP_E1_OGDC_like; cd02016"
                     /db_xref="CDD:238974"
     misc_feature    order(61748..61750,61847..61858,61949..61951,61955..61957)
                     /gene="sucA"
                     /locus_tag="CTDLC_0054"
                     /note="TPP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238974"
     misc_feature    62564..63151
                     /gene="sucA"
                     /locus_tag="CTDLC_0054"
                     /note="Transketolase, pyrimidine binding domain; Region:
                     Transket_pyr; pfam02779"
                     /db_xref="CDD:251526"
     gene            63599..64696
                     /gene="sucB_1"
                     /locus_tag="CTDLC_0055"
                     /db_xref="GeneID:12388443"
     CDS             63599..64696
                     /gene="sucB_1"
                     /locus_tag="CTDLC_0055"
                     /EC_number="2.3.1.61"
                     /codon_start=1
                     /transl_table=11
                     /product="Dihydrolipoamide succinyltransferase component
                     (E2) of 2-oxoglutarate dehydrogenase complex"
                     /protein_id="YP_005811986.1"
                     /db_xref="GI:385244142"
                     /db_xref="GeneID:12388443"
                     /translation="MSIEVRIPNIAESISEVTISALLIPSGDLVQENQGILEIESDKV
                     NQLIYAPCSGRVEWSVSVGDTVAVGSVVGIISEAEKSQDTAPIHEQMPFSLVEQESDA
                     QIIAFPSSVRQDPPAEGKTFVPLKEIQPASSDHRESRESMSAIRKTISRRLVQSLHDS
                     AMLTTFNEIHMGPLIALRKERQEDFVAKYGVKLGFMSFFVRAVVDSLKKYPRVNAYIE
                     DNEIVYRHYYDISIAIGTDRGLVVPVIRNCDQLSSGEIELQLADLASRAREGKLAIHE
                     LEGGGFTITNGGVYGSLLSTPIINPPQVGILGMHKIEKRPVVREDAIVIADMMYVAMS
                     YDHRIIDGKEAVGFLVNVKEQLEQPELLLKM"
     misc_feature    63599..64687
                     /gene="sucB_1"
                     /locus_tag="CTDLC_0055"
                     /note="dihydrolipoamide succinyltransferase; Validated;
                     Region: PRK05704"
                     /db_xref="CDD:235571"
     misc_feature    63605..63823
                     /gene="sucB_1"
                     /locus_tag="CTDLC_0055"
                     /note="Lipoyl domain of the dihydrolipoyl acyltransferase
                     component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
                     dehydrogenase multienzyme complexes, like pyruvate
                     dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
                     and branched-chain 2-oxo acid...; Region: lipoyl_domain;
                     cd06849"
                     /db_xref="CDD:133458"
     misc_feature    order(63695..63697,63716..63733,63743..63745)
                     /gene="sucB_1"
                     /locus_tag="CTDLC_0055"
                     /note="E3 interaction surface; other site"
                     /db_xref="CDD:133458"
     misc_feature    63725..63727
                     /gene="sucB_1"
                     /locus_tag="CTDLC_0055"
                     /note="lipoyl attachment site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:133458"
     misc_feature    64055..64687
                     /gene="sucB_1"
                     /locus_tag="CTDLC_0055"
                     /note="2-oxoacid dehydrogenases acyltransferase (catalytic
                     domain); Region: 2-oxoacid_dh; pfam00198"
                     /db_xref="CDD:249671"
     gene            complement(64725..65483)
                     /gene="yfiH"
                     /locus_tag="CTDLC_0056"
                     /db_xref="GeneID:12388444"
     CDS             complement(64725..65483)
                     /gene="yfiH"
                     /locus_tag="CTDLC_0056"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005811987.1"
                     /db_xref="GI:385244143"
                     /db_xref="GeneID:12388444"
                     /translation="MERARIGSLMTLPSEALRKQTFPELEYLPIRHGIFPKQDGKEEA
                     SQVSDEVISSSLGGNDFCNARQVHGTSVRYVTPKTPKRAPADGLFTTTLLLSLHIYHA
                     DCQAAIFYDPENHVIANVHAGWRGLVGNIYAVTVRLLKKTFNTRPQDLIVAISPSLGP
                     DMAVYPDYKRLFPSSFFPLMPKENHLDFRAVARKQLLSEGLSSNHIFISERCTCSESN
                     TFFSFRSWKSRHQQDPSAIRSRKNNVTAVLLLPR"
     misc_feature    complement(64734..65414)
                     /gene="yfiH"
                     /locus_tag="CTDLC_0056"
                     /note="uncharacterized protein, YfiH family; Region:
                     TIGR00726"
                     /db_xref="CDD:233104"
     gene            complement(65465..67294)
                     /gene="gcpE"
                     /locus_tag="CTDLC_0057"
                     /db_xref="GeneID:12388445"
     CDS             complement(65465..67294)
                     /gene="gcpE"
                     /locus_tag="CTDLC_0057"
                     /EC_number="1.17.7.1"
                     /codon_start=1
                     /transl_table=11
                     /product="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
                     synthase"
                     /protein_id="YP_005811988.1"
                     /db_xref="GI:385244144"
                     /db_xref="GeneID:12388445"
                     /translation="MFVGHLVMATPCIQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTT
                     TATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIH
                     FFPQAAIHVVDCVDKVRINPGNYVDKRNMFTGKIYSDEQYAHSLEHLMNKFSPLVEKC
                     KRLGKAMRIGVNHGSLSERVTQRYGNTIEGMVYSALEYAEVCVAMDYHDVIFSMKSSN
                     PKVMVAAYRSLAYELDQREWSYPLHLGVTEAGSGTAGIVKSAVGIGTLLSEGLGDTIR
                     CSLTGSPINEIPICIDLLKQTTELSERWGEADNPFAIHSSKQLGTRNTLNTPPWGNVY
                     GLLINLTDVQLLTAEPIELLQCLGIDTTTGKIDPTTPEGVVVPKAMRSSPIVSEIEKH
                     LLVFNKEDVPILNPMNEEEWLSEETLSAPFVYFEVTDIHTARRFFSLRQHSTQPVCLS
                     FSLDPHLSKNEAIIDLSARLGALLLDGLGSCVLLDFVDIKLSRTLGFLILQSANIRSV
                     TVEYVSCPGCGRTLFDLLAVSQRIRERTQHLPGGLKIAVMGCIVNGPGEMADADFGYV
                     GSKPGMIDLYVKHKCVKSCIPIENAEEELVQLLKEHGVWKEPE"
     misc_feature    complement(65468..67276)
                     /gene="gcpE"
                     /locus_tag="CTDLC_0057"
                     /note="4-hydroxy-3-methylbut-2-en-1-yl diphosphate
                     synthase; Validated; Region: PRK00694"
                     /db_xref="CDD:234812"
     misc_feature    complement(65486..67234)
                     /gene="gcpE"
                     /locus_tag="CTDLC_0057"
                     /note="GcpE protein; Region: GcpE; pfam04551"
                     /db_xref="CDD:252666"
     gene            complement(67425..68528)
                     /locus_tag="CTDLC_0058"
                     /db_xref="GeneID:12388446"
     CDS             complement(67425..68528)
                     /locus_tag="CTDLC_0058"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane spanning protein"
                     /protein_id="YP_005811989.1"
                     /db_xref="GI:385244145"
                     /db_xref="GeneID:12388446"
                     /translation="MFTSLSAIQNAIRPSCQLPVLTPRRALITSLASGIILGLAGCVV
                     GVLASFPALIAVSAVILGVSLFASGLFLCRYVCPPKIVSRRPSTELPAEPTPELPEIK
                     RPKPIAPPPPDFIPPRPLRRTIGEMLFGWNCIGSIRQMPFFLANDKTPLSFRNPSARF
                     RAWNIPSTHTIFVSTSGQFSSLRMQSNLPAAIANATQSAAFAKRGQGGLGVNDAFPAV
                     LTDKCWEESKPDSGILLPGECSSATWEDKNHLVPCWDEETKTYNKPLLFIQMLAPKAS
                     MYQDDSKSCYEITLRAYTACFEEAIRCGCRIIQIPLIAAFGDFVPRALSKQPKWIESA
                     KLSLLHAVEKTAKKHASKDLVIVLTNIPQPVNL"
     misc_feature    complement(<68235..68462)
                     /locus_tag="CTDLC_0058"
                     /note="IncA protein; Region: IncA; pfam04156"
                     /db_xref="CDD:252417"
     misc_feature    complement(67548..68018)
                     /locus_tag="CTDLC_0058"
                     /note="Appr-1'-p processing enzyme; Region: A1pp;
                     smart00506"
                     /db_xref="CDD:214701"
     misc_feature    complement(order(67575..67583,67587..67589,67893..67898,
                     67902..67904,67938..67940,67995..67997))
                     /locus_tag="CTDLC_0058"
                     /note="ADP-ribose binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239150"
     gene            complement(68608..68883)
                     /gene="fer"
                     /locus_tag="CTDLC_0059"
                     /db_xref="GeneID:12388447"
     CDS             complement(68608..68883)
                     /gene="fer"
                     /locus_tag="CTDLC_0059"
                     /codon_start=1
                     /transl_table=11
                     /product="Ferredoxin"
                     /protein_id="YP_005811990.1"
                     /db_xref="GI:385244146"
                     /db_xref="GeneID:12388447"
                     /translation="MAKLIISADDENQEFHLEDGSSIAEVCEHSGVPLACTEGVCGTC
                     VIEVLEGADNLSDFSEAEYDFLGDPEDSNERLACQCCIKGGCVKITF"
     misc_feature    complement(68623..68874)
                     /gene="fer"
                     /locus_tag="CTDLC_0059"
                     /note="2Fe-2S iron-sulfur cluster binding domain.
                     Iron-sulfur proteins play an important role in electron
                     transfer processes and in various enzymatic reactions. The
                     family includes plant and algal ferredoxins, which act as
                     electron carriers in photosynthesis...; Region: fer2;
                     cd00207"
                     /db_xref="CDD:238126"
     misc_feature    complement(order(68650..68655,68752..68763,68767..68769,
                     68776..68778,68785..68787))
                     /gene="fer"
                     /locus_tag="CTDLC_0059"
                     /note="catalytic loop [active]"
                     /db_xref="CDD:238126"
     misc_feature    complement(order(68650..68652,68752..68754,68761..68763,
                     68776..68778))
                     /gene="fer"
                     /locus_tag="CTDLC_0059"
                     /note="iron binding site [ion binding]; other site"
                     /db_xref="CDD:238126"
     gene            complement(68921..68995)
                     /locus_tag="CTDLC_r036"
                     /db_xref="GeneID:12388448"
     tRNA            complement(68921..68995)
                     /locus_tag="CTDLC_r036"
                     /product="tRNA-Pro"
                     /db_xref="GeneID:12388448"
     gene            69065..70882
                     /gene="flhA"
                     /locus_tag="CTDLC_0060"
                     /db_xref="GeneID:12388449"
     CDS             69065..70882
                     /gene="flhA"
                     /locus_tag="CTDLC_0060"
                     /note="protein FlhA"
                     /codon_start=1
                     /transl_table=11
                     /product="Flagellar biosynthesis protein"
                     /protein_id="YP_005811991.1"
                     /db_xref="GI:385244147"
                     /db_xref="GeneID:12388449"
                     /translation="MQNILRTSSCRYMFLLGIRSVWNRVAVVNNFRGSSWKIVAIPSC
                     ILFTLIFHLPRWLIDFGVCTNLACSLSIIFWVFSLRSSASARIFPSLLLYLCLLRLGL
                     NLASTRWILSSGWASPLIFALGNFFSLGSIPVALTVCLLLFLVNFLVITKGAERIAEV
                     RARFSLEALPGKQMSLDADIAAGRIGYSRASVKKSSLLEESDYFSAMEGVFRFVKGDA
                     IMSWVLLGVNILAALFLGRATHVGDLWLTVLGDALVSQIPALLTSCAAATLIAKVGEK
                     ESLAQHLLDYYEQSRQSFLFIALILCGMACIPGAPKALILGFSVLLFLGYKNPSSGET
                     LLFQKERVEFVLPDEGVGNPANLYKDARNQIYQELGVVFPEAIVVRHVTGSSPRLIFS
                     GQEVALRELSCPAILESIRQLAPETISERFVTRLVDEFREHAFLSIEEILPLKISENS
                     LIFLLRALVRERVSLHLFPKILEAIDVYGSQPKNSQELVECVRKYLGKQIGLSLWNRQ
                     DVLEVITIDSLVEQFVRDSQEKVVLDLNEKVVAQVKHLLRVGEGNFRAIVTGSETRKE
                     LKRIVDPYFPDLLVLAHSELPEEIPITLLGAVSDEVLLS"
     misc_feature    69143..70879
                     /gene="flhA"
                     /locus_tag="CTDLC_0060"
                     /note="type III secretion system protein; Validated;
                     Region: PRK05910"
                     /db_xref="CDD:168293"
     gene            70990..71751
                     /gene="fliA"
                     /locus_tag="CTDLC_0061"
                     /db_xref="GeneID:12388450"
     CDS             70990..71751
                     /gene="fliA"
                     /locus_tag="CTDLC_0061"
                     /note="protein FliA"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor flagellar operon"
                     /protein_id="YP_005811992.1"
                     /db_xref="GI:385244148"
                     /db_xref="GeneID:12388450"
                     /translation="MKTHDLADTWQLYWSTKEIHHRDVLIESYLPLVKNVAHRLASGM
                     PSHVKMEDLYALGVEGLIRAVERFDPEKSKRFESYALFIIKAAIIDGLRKQDWVPRSV
                     YQRANRLADAMDSLRQTLGKEPTDGELCEYLNISQQELSHWFSSSRPALVLSLHDDFS
                     CQDDDEGLALEERIADERAETGYDVIRKKEAISILTEALLALDEKERQVMALYYYDDL
                     VLKEIGKILGVSESRVSQIHSKALLKLRGTLSSLL"
     misc_feature    70990..71748
                     /gene="fliA"
                     /locus_tag="CTDLC_0061"
                     /note="RNA polymerase sigma factor sigma-28; Reviewed;
                     Region: PRK05911"
                     /db_xref="CDD:235644"
     misc_feature    71062..71280
                     /gene="fliA"
                     /locus_tag="CTDLC_0061"
                     /note="Sigma-70 region 2; Region: Sigma70_r2; pfam04542"
                     /db_xref="CDD:252661"
     misc_feature    71299..71532
                     /gene="fliA"
                     /locus_tag="CTDLC_0061"
                     /note="Sigma-70 region 3; Region: Sigma70_r3; pfam04539"
                     /db_xref="CDD:146934"
     misc_feature    71572..71727
                     /gene="fliA"
                     /locus_tag="CTDLC_0061"
                     /note="Sigma70, region (SR) 4 refers to the most
                     C-terminal of four conserved domains found in Escherichia
                     coli (Ec) sigma70, the main housekeeping sigma, and
                     related sigma-factors (SFs). A SF is a dissociable subunit
                     of RNA polymerase, it directs bacterial or...; Region:
                     Sigma70_r4; cd06171"
                     /db_xref="CDD:100119"
     misc_feature    order(71596..71598,71626..71628,71644..71649,71677..71679,
                     71683..71688,71692..71700,71704..71709,71713..71715)
                     /gene="fliA"
                     /locus_tag="CTDLC_0061"
                     /note="DNA binding residues [nucleotide binding]"
                     /db_xref="CDD:100119"
     gene            71910..73148
                     /gene="tyrS"
                     /locus_tag="CTDLC_0062"
                     /db_xref="GeneID:12388451"
     CDS             71910..73148
                     /gene="tyrS"
                     /locus_tag="CTDLC_0062"
                     /EC_number="6.1.1.1"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosyl-tRNA synthetase"
                     /protein_id="YP_005811993.1"
                     /db_xref="GI:385244149"
                     /db_xref="GeneID:12388451"
                     /translation="MQQLIDNLKKRGILDNSSAGLESLTVPVSAYLGFDPTAPSLHIG
                     HWIGICFLRRLAAYGITPVALVGGATGMIGDPSGKSVERSLLDQAQVLDNSKKIAAAL
                     ASYLPGIRIVNNADWLGSLSMVDFLRDVGKHFRLGSMLAKDVVKQRVYSEEGISYTEF
                     SYLLLQSYDFAHLFKEHNVVLQCGGSDQWGNITSGIDYIRRRGLGQAYGLTYPLLTDS
                     KGKKIGKTESGTIWLDPALTPPYELFQYFLRLPDQEISKVMRTLTLLDNEEIFALDER
                     LTSDPQAVKKYIAEVIVKDVHGSEGLAQAQAATESFFASKGKSITEAELVALVESGVG
                     VKVARADLIGKRWLDIVVELGFCSSRGQARRLIQQRGLYINQEPLADEQSILDGTQLC
                     FDRYVLLSQGKRKKQVIDLN"
     misc_feature    71910..73124
                     /gene="tyrS"
                     /locus_tag="CTDLC_0062"
                     /note="tyrosyl-tRNA synthetase; Validated; Region:
                     PRK05912"
                     /db_xref="CDD:235645"
     misc_feature    71991..72794
                     /gene="tyrS"
                     /locus_tag="CTDLC_0062"
                     /note="catalytic core domain of tyrosinyl-tRNA synthetase;
                     Region: TyrRS_core; cd00805"
                     /db_xref="CDD:173902"
     misc_feature    order(72000..72002,72006..72014,72033..72035,72039..72044,
                     72393..72395,72405..72407,72414..72416,72453..72455,
                     72459..72464,72471..72473,72549..72554,72573..72584)
                     /gene="tyrS"
                     /locus_tag="CTDLC_0062"
                     /note="active site"
                     /db_xref="CDD:173902"
     misc_feature    72033..72044
                     /gene="tyrS"
                     /locus_tag="CTDLC_0062"
                     /note="HIGH motif; other site"
                     /db_xref="CDD:173902"
     misc_feature    order(72114..72116,72123..72128,72276..72281,72285..72293,
                     72300..72305,72309..72320,72324..72329,72381..72383,
                     72387..72392,72399..72404)
                     /gene="tyrS"
                     /locus_tag="CTDLC_0062"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:173902"
     misc_feature    72573..72587
                     /gene="tyrS"
                     /locus_tag="CTDLC_0062"
                     /note="KMSKS motif; other site"
                     /db_xref="CDD:173902"
     misc_feature    72942..73145
                     /gene="tyrS"
                     /locus_tag="CTDLC_0062"
                     /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
                     domain surface is populated by conserved, charged residues
                     that define a likely RNA-binding site;  Found in stress
                     proteins, ribosomal proteins and tRNA synthetases; This
                     may imply a hitherto unrecognized...; Region: S4; cd00165"
                     /db_xref="CDD:238095"
     misc_feature    order(72945..72947,72981..72986,72990..72995,72999..73004,
                     73011..73016,73020..73022,73041..73064,73068..73070)
                     /gene="tyrS"
                     /locus_tag="CTDLC_0062"
                     /note="RNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238095"
     gene            73158..74600
                     /gene="gnd"
                     /locus_tag="CTDLC_0063"
                     /db_xref="GeneID:12388452"
     CDS             73158..74600
                     /gene="gnd"
                     /locus_tag="CTDLC_0063"
                     /EC_number="1.1.1.44"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconate dehydrogenase"
                     /protein_id="YP_005811994.1"
                     /db_xref="GI:385244150"
                     /db_xref="GeneID:12388452"
                     /translation="MAPNTDIGLIGLAVMGKNLVLNMVDHGFSVSVYNRSPAKTEEFL
                     KDHGESGALQGFTTIQEFVQSLKRPRKIMIMIKAGAPVDEMIASLLPFLEEGDILIDG
                     GNSYYLDSEQRYVDLKKEGILFVGMGVSGGEEGARKGPSIMPGGNIDAWPAIAPIFQS
                     IAAQVDGRPCCSWIGTGGAGHFVKAVHNGIEYGDIQLICETYEILKTRLNLSLEQIGN
                     IFFEWNQTDLNSYLIGAAAAVLIAKDENGNAIASTILDVAGQKGTGRWVAEDAIKAGV
                     PMSLIIESVLARYLSTWKEVRTKAAQEFPGIPLLCQPPQEASAFIEDVREALYAAKII
                     SYAQGFMLLKQVSQDKGWDLNLGELALIWRGGCIIQSAFLDKIHQGFENSPEAHSLIL
                     QDYFKKVLFDSETGFRRAVLHAIGSGVAIPCLSSALSFYDGYRTVDSSLFLVQGLRDY
                     FGAHGYERRDCPRGEFYHTDWLETKKTFRV"
     misc_feature    73170..73652
                     /gene="gnd"
                     /locus_tag="CTDLC_0063"
                     /note="NAD binding domain of 6-phosphogluconate
                     dehydrogenase; Region: NAD_binding_2; pfam03446"
                     /db_xref="CDD:251959"
     misc_feature    73173..74576
                     /gene="gnd"
                     /locus_tag="CTDLC_0063"
                     /note="6-phosphogluconate dehydrogenase (decarboxylating);
                     Region: gnd; TIGR00873"
                     /db_xref="CDD:129951"
     misc_feature    73695..74570
                     /gene="gnd"
                     /locus_tag="CTDLC_0063"
                     /note="6-phosphogluconate dehydrogenase, C-terminal
                     domain; Region: 6PGD; pfam00393"
                     /db_xref="CDD:249826"
     gene            complement(74661..76469)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /db_xref="GeneID:12388453"
     CDS             complement(74661..76469)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="LepA protein"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="YP_005811995.1"
                     /db_xref="GI:385244151"
                     /db_xref="GeneID:12388453"
                     /translation="MKPYKIENIRNFSIIAHIDHGKSTIADRLLESTSTIEQREMREQ
                     LLDSMDLERERGITIKAHPVTMTYEYEGETYELNLIDTPGHVDFSYEVSRSLAACEGA
                     LLIVDAAQGVQAQSLANVYLALERDLEIIPVLNKIDLPAAQPEAIKKQIEEFIGLDTS
                     NTIACSAKTGQGIPEILESIIRLVPPPKPPQETELKALIFDSHYDPYVGIMVYVRVIS
                     GEIKKGDRITFMATKGSSFEVLGIGAFLPEATLMEGSLRAGQVGYFIANLKKVKDVKI
                     GDTVTTVKHPAKEPLEGFKEIKPVVFAGIYPIDSSDFDTLKDALGRLQLNDSALTIEQ
                     ENSHSLGFGFRCGFLGLLHLEIIFERISREFDLDIIATAPSVIYKVVLKNGKTLFIDN
                     PTAYPDPALIEHMEEPWVHVNIITPQEYLSNIMSLCMDKRGICLKTDMLDQHRLVLSY
                     ELPLNEIVSDFNDKLKSVTKGYGSFDYRLGDYKKGAIIKLEILINDEAVDAFSCLVHR
                     DKAESKGRSICEKLVDVIPPQLFKIPIQAAINKKIIARETIRALAKNVTAKCYGGDIT
                     RKRKLWDKQKKGKKRMKEFGKVSIPNTAFVEVLKME"
     misc_feature    complement(74664..76457)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="GTP-binding protein LepA; Provisional; Region:
                     PRK05433"
                     /db_xref="CDD:235462"
     misc_feature    complement(75909..76442)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="LepA also known as Elongation Factor 4 (EF4);
                     Region: LepA; cd01890"
                     /db_xref="CDD:206677"
     misc_feature    complement(76401..76424)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="G1 box; other site"
                     /db_xref="CDD:206677"
     misc_feature    complement(order(76020..76022,76032..76034,76140..76145,
                     76212..76217,76281..76286,76377..76382,76389..76391,
                     76398..76403,76413..76415,76419..76421))
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="putative GEF interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206677"
     misc_feature    complement(order(75966..75974,76056..76058,76062..76067,
                     76398..76415))
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206677"
     misc_feature    complement(76284..76319)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206677"
     misc_feature    complement(76296..76298)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="G2 box; other site"
                     /db_xref="CDD:206677"
     misc_feature    complement(76218..76229)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="G3 box; other site"
                     /db_xref="CDD:206677"
     misc_feature    complement(76167..76223)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206677"
     misc_feature    complement(76056..76067)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="G4 box; other site"
                     /db_xref="CDD:206677"
     misc_feature    complement(75966..75974)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="G5 box; other site"
                     /db_xref="CDD:206677"
     misc_feature    complement(75627..75887)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="lepA_II: This subfamily represents the domain II of
                     LepA, a GTP-binding protein localized in the cytoplasmic
                     membrane. The N-terminal domain of LepA shares regions of
                     homology to translation factors. In terms of interaction
                     with the ribosome, EF-G, EF-Tu...; Region: lepA_II;
                     cd03699"
                     /db_xref="CDD:239670"
     misc_feature    complement(75360..75578)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="Elongation Factor G, domain II; Region: EFG_II;
                     pfam14492"
                     /db_xref="CDD:258632"
     misc_feature    complement(75018..75251)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="lepA_C: This family represents the C-terminal
                     region of LepA, a GTP-binding protein localized in the
                     cytoplasmic membrane.   LepA is ubiquitous in Bacteria and
                     Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is
                     missing from Archaea. LepA exhibits...; Region: lepA_C;
                     cd03709"
                     /db_xref="CDD:239680"
     misc_feature    complement(74667..74990)
                     /gene="lepA"
                     /locus_tag="CTDLC_0064"
                     /note="GTP-binding protein LepA C-terminus; Region:
                     LepA_C; pfam06421"
                     /db_xref="CDD:203441"
     gene            complement(76655..78241)
                     /locus_tag="CTDLC_0065"
                     /db_xref="GeneID:12388454"
     CDS             complement(76655..78241)
                     /locus_tag="CTDLC_0065"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP,ATP carrier protein"
                     /protein_id="YP_005811996.1"
                     /db_xref="GI:385244152"
                     /db_xref="GeneID:12388454"
                     /translation="MTQTAEKPFGKLRSFLWPIHMHELKKVLPMFLMFFCISFNYTIL
                     RDTKDTLIVTAPGSGAEAIPFIKLWLVVPSAVVFMLIYAKLSNILNKQALFFAVLSPF
                     VVFFALFPVVIYPCRHILHPTAFADTLQSILPSGFMGFIAMLRNWTFAVFYVLSELWG
                     SVMLSLMFWGFANEITKISEAKRFYALFGVGANVALLISGPAIIWSSKLRASLGEGVD
                     PWGVSLYFLMAMFLCSCAIIAACYWWMNRYVLTDPRFYNPAELKAKKSKPKMSMGESF
                     SYLLRSPYMLLLALLVICYGICINLVEVTWKSQLKMQFPNPNDYSAFMGNFSFWTGVV
                     SVFVMLFIGGNVIRRFGWLTGALVTPIMVLVTGAVFFALVIFRDHATGLVAALGTTPL
                     MLAVVVGAIQNILSKSTKYALFDATKEMAYIPLDQEQKVKGKAAIDVVAARFGKSGGS
                     LIQQGLLVVCGSIGAMTPFLAVALFAIIMVWLTSATKLNKLFLAASAAKEQELAEAAA
                     AEKEASSAAKESAPAIEGVS"
     misc_feature    complement(76766..78187)
                     /locus_tag="CTDLC_0065"
                     /note="ADP/ATP carrier protein family; Region: AAA;
                     TIGR00769"
                     /db_xref="CDD:233122"
     gene            complement(78592..79137)
                     /locus_tag="CTDLC_0066"
                     /db_xref="GeneID:12388455"
     CDS             complement(78592..79137)
                     /locus_tag="CTDLC_0066"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005811997.1"
                     /db_xref="GI:385244153"
                     /db_xref="GeneID:12388455"
                     /translation="MTITINKAKTTICRTRLPTKELFMATAQITIQEEIEQLITKAIS
                     KVGGSKENDLCRYLPGPTGGYMHHFTLKKMKNSAPEQLLKMLKTFVIDSITPRSISPK
                     PRAPRGSKKRRDFVNFTKTDIERVLELARQVGDKDLLARFSPKKPLPSLKRELIRSIR
                     NNIVSTELWNAYVEALSQPTE"
     gene            79726..80706
                     /gene="ytgA"
                     /locus_tag="CTDLC_0067"
                     /db_xref="GeneID:12388456"
     CDS             79726..80706
                     /gene="ytgA"
                     /locus_tag="CTDLC_0067"
                     /codon_start=1
                     /transl_table=11
                     /product="Manganese-binding protein"
                     /protein_id="YP_005811998.1"
                     /db_xref="GI:385244154"
                     /db_xref="GeneID:12388456"
                     /translation="MSFFHTRKYKLILRGLLCLAGCFLMNSCSSSRGNQPADESIYVL
                     SMNRMICDCVSRITGDRVKNIVLIDGAIDPHSYEMVKGDEDRMAMSQLIFCNGLGLEH
                     SASLRKHLEGNPKVVDLGQRLLNKNCFDLLSEEGFPDPHIWTDMRVWGAAVKEMAAAL
                     IQQFPQYEEDFQKNADQILSEMEELDRWAARSLSTIPEKNRYLVTGHNAFSYFTRRYL
                     SSDAERVSGEWRSRCISPEGLSPEAQISIRDIMRVVEYISANDVEVVFLEDTLNQDAL
                     RKIVSCSKSGQKIRLAKSPLYSDNVCDNYFSTFQHNVRTITEELGGTVLE"
     misc_feature    79744..80691
                     /gene="ytgA"
                     /locus_tag="CTDLC_0067"
                     /note="ABC-type metal ion transport system, periplasmic
                     component/surface adhesin [Inorganic ion transport and
                     metabolism]; Region: LraI; COG0803"
                     /db_xref="CDD:223874"
     misc_feature    79846..80688
                     /gene="ytgA"
                     /locus_tag="CTDLC_0067"
                     /note="Helical backbone metal receptor (TroA-like domain).
                     These proteins have been shown to function in the ABC
                     transport of ferric siderophores and metal ions such as
                     Mn2+, Fe3+, Cu2+ and/or Zn2+.  Their ligand binding site
                     is formed in the interface between...; Region: TroA-like;
                     cl00262"
                     /db_xref="CDD:260309"
     misc_feature    order(80038..80043,80050..80052,80197..80199)
                     /gene="ytgA"
                     /locus_tag="CTDLC_0067"
                     /note="intersubunit interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238347"
     gene            80624..81478
                     /gene="ytgB_1"
                     /locus_tag="CTDLC_0068"
                     /db_xref="GeneID:12388457"
     CDS             80624..81478
                     /gene="ytgB_1"
                     /locus_tag="CTDLC_0068"
                     /codon_start=1
                     /transl_table=11
                     /product="Manganese transport system ATP-binding protein"
                     /protein_id="YP_005811999.1"
                     /db_xref="GI:385244155"
                     /db_xref="GeneID:12388457"
                     /translation="MSVITILARSSTMFAQLQKNWEGLFLNRDNAIAWSVEDLCVNYD
                     HSDVLCHITFSLPAGAMAAIIGPNGAGKSTLLKASLGLIRASSGQSLFFGQRFSKVHH
                     RIAYMPQRASVDWDFPMTVLDLVLMGCYGYKGIWNRISTDDRQEAMRILERVGLEAFA
                     NRQIGKLSGGQQQRAFLARSLMQKADLYLMDELFSAIDMASYQMVVDVLQELKSEGKT
                     IVVIHHDLSNVRKLFDHVILLNKHLVCSGSVEECLTKEAIFQAYGCELELLDYTLKLS
                     RGKYQGSC"
     misc_feature    80711..81421
                     /gene="ytgB_1"
                     /locus_tag="CTDLC_0068"
                     /note="ABC-type Mn/Zn transport systems, ATPase component
                     [Inorganic ion transport and metabolism]; Region: ZnuC;
                     COG1121"
                     /db_xref="CDD:224046"
     misc_feature    80726..81364
                     /gene="ytgB_1"
                     /locus_tag="CTDLC_0068"
                     /note="ATP-binding cassette domain of the metal-type
                     transporters; Region: ABC_Metallic_Cations; cd03235"
                     /db_xref="CDD:213202"
     gene            81479..82834
                     /gene="ytgC"
                     /locus_tag="CTDLC_0069"
                     /db_xref="GeneID:12388458"
     CDS             81479..82834
                     /gene="ytgC"
                     /locus_tag="CTDLC_0069"
                     /codon_start=1
                     /transl_table=11
                     /product="Manganese transport system membrane protein"
                     /protein_id="YP_005812000.1"
                     /db_xref="GI:385244156"
                     /db_xref="GeneID:12388458"
                     /translation="MLSCIFQDTIFLSSFLAVSLICMTTALWGTILLVERQPLLSESL
                     SHACYPGLLIGALLSYKVPAFSDSLWVIIFFGCLASVLGCLGISFLEKKLAMHKDSAL
                     CLVLVSFFGVGVILVSYVKDCCPLLYNKINAYLYGQAATLGYTEAKLALIIFCLSAVV
                     LWWWYRQISVAIFDREFAYSCGLRTRTAELVVLVFISLVIVSGVRSVGILLISAMFVA
                     PPLSARQLSDRLSTILILSSIFGGICGALGCYFSVAFTCQTVVEGKPISIILPTGPLV
                     VFFAGVLVFLCLIFSWKTGWITRYFRRKWFLFSRDEEHLLKIFWYLREQNTYQVGMRD
                     FVRSRKYQEYFGDKVFPRFRMFLLCKKGLVSCSEHQWSLTDKGLARAAKLVRAHRLWE
                     SYLVSQLDFNKNEVHHFAEEMEHVLTDELDSTLSQMLQDPDYDPHQREIPKRTRKSDG
                     C"
     misc_feature    81509..82342
                     /gene="ytgC"
                     /locus_tag="CTDLC_0069"
                     /note="Transmembrane subunit (TM), of Periplasmic Binding
                     Protein (PBP)-dependent ATP-Binding Cassette (ABC)
                     transporters involved in the uptake of siderophores, heme,
                     vitamin B12, or the divalent cations Mg2+ and Zn2+.
                     PBP-dependent ABC transporters consist of...; Region:
                     TM_ABC_iron-siderophores_like; cd06550"
                     /db_xref="CDD:119348"
     misc_feature    order(81563..81565,81575..81583,81962..81967,81971..81979,
                     81983..81988,81992..82009,82013..82021,82145..82147,
                     82166..82168)
                     /gene="ytgC"
                     /locus_tag="CTDLC_0069"
                     /note="ABC-ATPase subunit  interface; other site"
                     /db_xref="CDD:119348"
     misc_feature    order(81578..81580,81584..81586,81599..81601,81770..81772,
                     81776..81781,81788..81793,81800..81805,81812..81814,
                     81821..81826,81830..81832,81872..81877,81884..81886,
                     82112..82114,82298..82300,82307..82312,82319..82321,
                     82328..82333,82340..82342)
                     /gene="ytgC"
                     /locus_tag="CTDLC_0069"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119348"
     misc_feature    order(81830..81832,81914..81916,82088..82090,82100..82102,
                     82235..82237,82289..82291)
                     /gene="ytgC"
                     /locus_tag="CTDLC_0069"
                     /note="putative PBP binding regions; other site"
                     /db_xref="CDD:119348"
     misc_feature    82343..82750
                     /gene="ytgC"
                     /locus_tag="CTDLC_0069"
                     /note="Mn-dependent transcriptional regulator
                     [Transcription]; Region: TroR; COG1321"
                     /db_xref="CDD:224240"
     misc_feature    82598..82807
                     /gene="ytgC"
                     /locus_tag="CTDLC_0069"
                     /note="Iron dependent repressor, metal binding and
                     dimerization domain; Region: Fe_dep_repr_C; pfam02742"
                     /db_xref="CDD:251507"
     gene            82824..83780
                     /gene="ytgD"
                     /locus_tag="CTDLC_0070"
                     /db_xref="GeneID:12387546"
     CDS             82824..83780
                     /gene="ytgD"
                     /locus_tag="CTDLC_0070"
                     /codon_start=1
                     /transl_table=11
                     /product="Manganese transport system membrane protein"
                     /protein_id="YP_005812001.1"
                     /db_xref="GI:385244157"
                     /db_xref="GeneID:12387546"
                     /translation="MVASISPYYGVSFLEFFLVFFSRLFSGKLFYDHLYIDDIQVIVF
                     FAIAVSCSVVGTFLVLKKMAMYANVVSHTILFGLVCVCLFTHQLIHLSMQALTIAAVS
                     TTLLTGASIHFIRNVFKVAEEASTALVFSLLFSASLLLLVFLTRNAHVGTELVIGNAD
                     ALAKTDILPIFLVLLINLGISYCFFSSFVCVSFDTIFAFSLGIRIRLVDYLIMLLLSA
                     SIVGAFKAVGVLMSLAFLLIPGLIAKLIASSVQEMMVYSMVFGGLAALIAPALSRSIL
                     SIYGIGLSTSGLAVGLLLVFYVVMLVFVCSKRAIMLRQKLDK"
     misc_feature    82893..83738
                     /gene="ytgD"
                     /locus_tag="CTDLC_0070"
                     /note="ABC-type Mn2+/Zn2+ transport systems, permease
                     components [Inorganic ion transport and metabolism];
                     Region: ZnuB; COG1108"
                     /db_xref="CDD:224033"
     misc_feature    order(82986..82988,82998..83006,83367..83372,83376..83384,
                     83388..83393,83397..83414,83418..83426,83550..83552,
                     83571..83573)
                     /gene="ytgD"
                     /locus_tag="CTDLC_0070"
                     /note="ABC-ATPase subunit  interface; other site"
                     /db_xref="CDD:119348"
     misc_feature    order(83001..83003,83007..83009,83022..83024,83187..83189,
                     83193..83198,83205..83210,83217..83222,83229..83231,
                     83238..83243,83247..83249,83280..83285,83520..83522,
                     83670..83672,83679..83684,83691..83693,83700..83705,
                     83712..83714)
                     /gene="ytgD"
                     /locus_tag="CTDLC_0070"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119348"
     misc_feature    order(83247..83249,83319..83321,83493..83495,83505..83507,
                     83640..83642,83661..83663)
                     /gene="ytgD"
                     /locus_tag="CTDLC_0070"
                     /note="putative PBP binding regions; other site"
                     /db_xref="CDD:119348"
     gene            83807..84946
                     /gene="yaeM"
                     /locus_tag="CTDLC_0071"
                     /db_xref="GeneID:12387547"
     CDS             83807..84946
                     /gene="yaeM"
                     /locus_tag="CTDLC_0071"
                     /EC_number="1.1.1.267"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
                     /protein_id="YP_005812002.1"
                     /db_xref="GI:385244158"
                     /db_xref="GeneID:12387547"
                     /translation="MKHLALIGSTGSIGRQVLQVVRSIPDTFIIETLAAYGRNQEALI
                     SQIREFNPRVVAVREETTYKELRKLFPHIEILLGEEGLVSVATEPSVTMTIVASSGID
                     ALPAVIAAIRQKKTIALANKESLVAAGELVTTLARENGVQILPIDSEHNALFQCLEGR
                     DSSTIKKLLLTASGGPLRNKSKEELQKVSLQEVLRHPVWNMGPKITVDSSTLVNKGLE
                     IIEAFWLFGLEAVEIEAVIHPQSLVHGMVEFCDGTILSVMNPPSMLFPIQHVLTFPER
                     SPAIGPGFDFLSNRTLEFFPIDEDRFPSVHLAKRVLLEKGSMGCFFNGANEALVHRFL
                     AGEISWHQIVPKLQALVDQHRVQSCLSLEEILSVDAEARARAQEC"
     misc_feature    83807..84943
                     /gene="yaeM"
                     /locus_tag="CTDLC_0071"
                     /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
                     [Lipid metabolism]; Region: Dxr; COG0743"
                     /db_xref="CDD:223814"
     misc_feature    83816..84193
                     /gene="yaeM"
                     /locus_tag="CTDLC_0071"
                     /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase;
                     Region: DXP_reductoisom; pfam02670"
                     /db_xref="CDD:251461"
     misc_feature    84233..84484
                     /gene="yaeM"
                     /locus_tag="CTDLC_0071"
                     /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase
                     C-terminal; Region: DXP_redisom_C; pfam08436"
                     /db_xref="CDD:254800"
     misc_feature    84578..84934
                     /gene="yaeM"
                     /locus_tag="CTDLC_0071"
                     /note="DXP reductoisomerase C-terminal domain; Region:
                     DXPR_C; pfam13288"
                     /db_xref="CDD:257629"
     gene            85142..87001
                     /gene="yaeL"
                     /locus_tag="CTDLC_0072"
                     /db_xref="GeneID:12387548"
     CDS             85142..87001
                     /gene="yaeL"
                     /locus_tag="CTDLC_0072"
                     /codon_start=1
                     /transl_table=11
                     /product="Membrane endopeptidase, M50 family"
                     /protein_id="YP_005812003.1"
                     /db_xref="GI:385244159"
                     /db_xref="GeneID:12387548"
                     /translation="MTIIYFVLAALALGFLILIHELGHLLAAKAVGMSVESFSIGFGP
                     ALVRKKMGSVEYRIGAIPFGGYVRIKGMDRNDKDNSGDKEKTVYDIPEGFFSKSPWKR
                     IFVLAAGPLANLLVAIFVFGILYFSGGRTKSFSEYTSIVGWVHPSLEQQGLHAGDQIF
                     FCNGQPYSGHKMAFSSSLLERKLSLQGQHPAYFSESEAFSLEAPFNPNMEGVPCLGAS
                     YLLYRGSDPLPEKSPLVDAGLSEGDRLVWMDGLLVFSGAQVSQMLNEKQSFLRVERQG
                     KVVFVRQARVLAGDLTLTPYFKNELIDCQYEAGLKGKWASLYTLPYIINGDGFVESKV
                     KLLNDERVSLDYNLELGDKIVAVDGIPVMSNADILRLVQDHRVSLIFQRMSPEQLTVL
                     EQKAADQAFINSYDMDDLLRVAESVGEEREVSRLGDYRLVTRVQPRPWAHIYSEALLD
                     KQRALASKFRDEQERRYYLERIEAEKQRISLGIPLKDLAVQYNPDPWVLMEESVSDSL
                     KTVKALGMGRVSPQWLSGPVGIVRILHTGWSVGIPEALAWIGLISVNLAVLNLLPIPV
                     LDGGYILLCLWEILSRRRLNMRLVEKALVPFMILLVLFFVFLTLQDLSRVFVG"
     misc_feature    85145..86995
                     /gene="yaeL"
                     /locus_tag="CTDLC_0072"
                     /note="Predicted membrane-associated Zn-dependent
                     proteases 1 [Cell envelope biogenesis, outer membrane];
                     Region: COG0750"
                     /db_xref="CDD:223821"
     misc_feature    85157..>85519
                     /gene="yaeL"
                     /locus_tag="CTDLC_0072"
                     /note="RseP-like Site-2 proteases (S2P), zinc
                     metalloproteases (MEROPS family M50A), cleave
                     transmembrane domains of substrate proteins, regulating
                     intramembrane proteolysis (RIP) of diverse signal
                     transduction mechanisms. In Escherichia coli, the S2P
                     homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163"
                     /db_xref="CDD:100084"
     misc_feature    order(85199..85204,85211..85213)
                     /gene="yaeL"
                     /locus_tag="CTDLC_0072"
                     /note="active site"
                     /db_xref="CDD:100084"
     misc_feature    <86777..86986
                     /gene="yaeL"
                     /locus_tag="CTDLC_0072"
                     /note="Site-2 protease (S2P) class of zinc
                     metalloproteases (MEROPS family M50) cleaves transmembrane
                     domains of substrate proteins, regulating intramembrane
                     proteolysis (RIP) of diverse signal transduction
                     mechanisms. Members of this family use proteolytic...;
                     Region: S2P-M50; cl10020"
                     /db_xref="CDD:245232"
     misc_feature    86819..86830
                     /gene="yaeL"
                     /locus_tag="CTDLC_0072"
                     /note="putative substrate binding region [chemical
                     binding]; other site"
                     /db_xref="CDD:100078"
     gene            complement(88083..89180)
                     /gene="recF"
                     /locus_tag="CTDLC_0074"
                     /db_xref="GeneID:12387549"
     CDS             complement(88083..89180)
                     /gene="recF"
                     /locus_tag="CTDLC_0074"
                     /note="protein RecF"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication and repair protein"
                     /protein_id="YP_005812004.1"
                     /db_xref="GI:385244160"
                     /db_xref="GeneID:12387549"
                     /translation="MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALY
                     ILSLGRSFRTSRLTDAIRFGASHFFIEAVFSHKEVFHTLSIQVDKKGKKILFDGAPIT
                     KLSELVGLFPVILFSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQR
                     NASIKAQNQKAISAWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYE
                     SSLITEESPTLNDIASNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVAKFSS
                     EGQKHSLLAVLRFAECVYLQEEFCIHPLLCMDDIHACLDQQRLDQLLQLSNSLGQVVT
                     TSTICPDHRSTTSCIFHVTQAQVSLVAPQSL"
     misc_feature    complement(88089..89180)
                     /gene="recF"
                     /locus_tag="CTDLC_0074"
                     /note="recF protein; Region: recf; TIGR00611"
                     /db_xref="CDD:233051"
     misc_feature    complement(88107..89174)
                     /gene="recF"
                     /locus_tag="CTDLC_0074"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:266551"
     misc_feature    complement(89070..89093)
                     /gene="recF"
                     /locus_tag="CTDLC_0074"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(order(88170..88172,88254..88259,88827..88829,
                     89067..89075,89079..89084))
                     /gene="recF"
                     /locus_tag="CTDLC_0074"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(88827..88838)
                     /gene="recF"
                     /locus_tag="CTDLC_0074"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(88329..88358)
                     /gene="recF"
                     /locus_tag="CTDLC_0074"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(88254..88271)
                     /gene="recF"
                     /locus_tag="CTDLC_0074"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(88236..88247)
                     /gene="recF"
                     /locus_tag="CTDLC_0074"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(88164..88184)
                     /gene="recF"
                     /locus_tag="CTDLC_0074"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            complement(89180..90466)
                     /gene="dnaN"
                     /locus_tag="CTDLC_0075"
                     /db_xref="GeneID:12387550"
     CDS             complement(89180..90466)
                     /gene="dnaN"
                     /locus_tag="CTDLC_0075"
                     /EC_number="2.7.7.7"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="YP_005812005.1"
                     /db_xref="GI:385244161"
                     /db_xref="GeneID:12387550"
                     /translation="MSLIIILISKYHVNFRLHGAFSNPSFVKIFFTKASPERRLTCFH
                     VTKHGYSFQTDLHDYRKIMKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCND
                     ELVFTATDLTVSTRCVVKAKVYESGSVTIPSRRFFQLIRELTEANIEVAAHSGEMATI
                     TSGSSCFRLLSMGKEDFPMLPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTG
                     VLLSIANGTMTVVGTDGKRLAKIDTEISLDPSFSGDYIIPIKAVEEIIRMSSEDVQST
                     IFLDQTKIAVECGNTLLVTKLLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALF
                     TNESSHSVKFSFSPGELTLTANCTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKHS
                     RDELVQLGISDSYNPGIITDSTRSLFVIMPMRLHDD"
     misc_feature    complement(89192..90280)
                     /gene="dnaN"
                     /locus_tag="CTDLC_0075"
                     /note="DNA polymerase III subunit beta; Validated; Region:
                     PRK05643"
                     /db_xref="CDD:235541"
     misc_feature    complement(89195..90280)
                     /gene="dnaN"
                     /locus_tag="CTDLC_0075"
                     /note="Beta clamp domain.  The beta subunit (processivity
                     factor) of DNA polymerase III holoenzyme, refered to as
                     the beta clamp, forms a ring shaped dimer that encircles
                     dsDNA (sliding clamp) in bacteria.  The beta-clamp is
                     structurally similar to the trimeric...; Region:
                     beta_clamp; cd00140"
                     /db_xref="CDD:238082"
     misc_feature    complement(order(89687..89689,90044..90046,90065..90067,
                     90209..90211))
                     /gene="dnaN"
                     /locus_tag="CTDLC_0075"
                     /note="putative DNA binding surface [nucleotide binding];
                     other site"
                     /db_xref="CDD:238082"
     misc_feature    complement(order(89372..89377,89468..89470,89969..89971,
                     89975..89977,90053..90055,90062..90064))
                     /gene="dnaN"
                     /locus_tag="CTDLC_0075"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238082"
     misc_feature    complement(order(89195..89206,89324..89326,89753..89764,
                     89768..89770))
                     /gene="dnaN"
                     /locus_tag="CTDLC_0075"
                     /note="beta-clamp/clamp loader binding surface; other
                     site"
                     /db_xref="CDD:238082"
     misc_feature    complement(order(89195..89206,89315..89317,89396..89401,
                     89438..89440,89543..89545,89759..89764,89768..89770))
                     /gene="dnaN"
                     /locus_tag="CTDLC_0075"
                     /note="beta-clamp/translesion DNA polymerase binding
                     surface; other site"
                     /db_xref="CDD:238082"
     gene            90560..91015
                     /gene="smpB"
                     /locus_tag="CTDLC_0076"
                     /db_xref="GeneID:12387551"
     CDS             90560..91015
                     /gene="smpB"
                     /locus_tag="CTDLC_0076"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein"
                     /protein_id="YP_005812006.1"
                     /db_xref="GI:385244162"
                     /db_xref="GeneID:12387551"
                     /translation="MGVKEIVSNRKAFHHYEVLETLDAGIVLTGTEIKSLRDHGGNLG
                     DAYVTISKGEAWLLQSSIALYRFGNINNHEERRKRKLLLHKYEIHKLDARISQKGLTV
                     VPLSFFFSKGFVKVRIGCCRGKKAHDKRQSIIEREKNRELAAAMKRSYR"
     misc_feature    90584..90931
                     /gene="smpB"
                     /locus_tag="CTDLC_0076"
                     /note="Small protein B (SmpB) is a component of the
                     trans-translation system in prokaryotes for releasing
                     stalled ribosome from damaged messenger RNAs; Region:
                     SmpB; cd09294"
                     /db_xref="CDD:187755"
     misc_feature    order(90626..90643,90647..90652,90656..90661,90668..90670,
                     90719..90721,90803..90820,90902..90904)
                     /gene="smpB"
                     /locus_tag="CTDLC_0076"
                     /note="SmpB-tmRNA interface; other site"
                     /db_xref="CDD:187755"
     gene            complement(90993..91943)
                     /gene="apbE"
                     /locus_tag="CTDLC_0077"
                     /db_xref="GeneID:12387552"
     CDS             complement(90993..91943)
                     /gene="apbE"
                     /locus_tag="CTDLC_0077"
                     /note="Iron-sulfur cluster assembly/repair protein"
                     /codon_start=1
                     /transl_table=11
                     /product="ApbE protein"
                     /protein_id="YP_005812007.1"
                     /db_xref="GI:385244163"
                     /db_xref="GeneID:12387552"
                     /translation="MGKFFASYLLILAPFFLQSCSAPSRTTLEGVRMTIPYRIVFGEA
                     LSPDAFQQAQKEIDRVFDHIDQTFNNWNPLSEISRINRTTKQTPIPLSPALFAFLCEI
                     DHFHAFSDGRFDPTLGALKSLWLLHLKSHTIPSQELQHLYKHSSGWHLISLDKTQQTL
                     RKLSPLVQLDLCGTVKGFAVDLLGTACAQFCQNYYVEWGGEIKTKGKHPSGRSWAVAS
                     SATPEILHLHDHAIATSGSQYQRWHVDNKTYTHILDPLTGTPLEDSSHPILAVSVINE
                     SCAFADAMATALTTFSSKQEALDWANKKHLCAYITDKNVS"
     misc_feature    complement(91002..91937)
                     /gene="apbE"
                     /locus_tag="CTDLC_0077"
                     /note="Membrane-associated lipoprotein involved in
                     thiamine biosynthesis [Coenzyme metabolism]; Region: ApbE;
                     COG1477"
                     /db_xref="CDD:224394"
     gene            complement(91913..92782)
                     /gene="folD"
                     /locus_tag="CTDLC_0078"
                     /db_xref="GeneID:12387553"
     CDS             complement(91913..92782)
                     /gene="folD"
                     /locus_tag="CTDLC_0078"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /note="methylenetetrahydrofolate dehydrogenase"
                     /codon_start=1
                     /transl_table=11
                     /product="Methenyltetrahydrofolate cyclohydrolase"
                     /protein_id="YP_005812008.1"
                     /db_xref="GI:385244164"
                     /db_xref="GeneID:12387553"
                     /translation="MCMLLKGAPAADHILATIKENIRACSKAPGLAVVLIGNNPASEI
                     YVNMKIKRATDLGMVSKSYRKPSDATLSDILALIHQLNNDENIHGILVQLPLPKHLDA
                     QAILSTITPDKDVDGLHPVNVGKLLLGETDGFIPCTPAGIVELCKYYEIPLHGKHVVI
                     LGRSNIVGKPLAALLMQRHADTNASVTLLHSQSEHLTEITRTADILISAIGVPLFVNK
                     EMIAEKTVIMDVGTSRIPAANPKGYILVGDVDFNNVVPVCRAITPVPGGVGPMTVAML
                     MRNTWESFLRHTS"
     misc_feature    complement(91916..92776)
                     /gene="folD"
                     /locus_tag="CTDLC_0078"
                     /note="bifunctional 5,10-methylene-tetrahydrofolate
                     dehydrogenase/ 5,10-methylene-tetrahydrofolate
                     cyclohydrolase; Provisional; Region: PRK14181"
                     /db_xref="CDD:172669"
     misc_feature    complement(92435..92776)
                     /gene="folD"
                     /locus_tag="CTDLC_0078"
                     /note="Tetrahydrofolate dehydrogenase/cyclohydrolase,
                     catalytic domain; Region: THF_DHG_CYH; pfam00763"
                     /db_xref="CDD:250116"
     misc_feature    complement(91931..92452)
                     /gene="folD"
                     /locus_tag="CTDLC_0078"
                     /note="NADP binding domain of methylene-tetrahydrofolate
                     dehydrogenase/cyclohydrolase; Region:
                     NAD_bind_m-THF_DH_Cyclohyd; cd01080"
                     /db_xref="CDD:133448"
     misc_feature    complement(order(92177..92179,92204..92209,92213..92215,
                     92219..92236,92255..92257,92264..92269,92294..92296,
                     92312..92314,92318..92320,92411..92413,92420..92425))
                     /gene="folD"
                     /locus_tag="CTDLC_0078"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:133448"
     misc_feature    complement(order(91967..91969,91976..91978,92087..92089,
                     92093..92095,92138..92140,92147..92149,92153..92155,
                     92210..92215,92291..92296,92369..92371))
                     /gene="folD"
                     /locus_tag="CTDLC_0078"
                     /note="NADP binding site [chemical binding]; other site"
                     /db_xref="CDD:133448"
     misc_feature    complement(order(91964..91966,91985..91990))
                     /gene="folD"
                     /locus_tag="CTDLC_0078"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:133448"
     gene            complement(92894..93337)
                     /locus_tag="CTDLC_0079"
                     /db_xref="GeneID:12387554"
     CDS             complement(92894..93337)
                     /locus_tag="CTDLC_0079"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812009.1"
                     /db_xref="GI:385244165"
                     /db_xref="GeneID:12387554"
                     /translation="MVSFLLFPRYFPEWRPVYFAPLIVTTFYSQPKERVLLWAMLSGL
                     LCDIGSTCFMGIQAFLYVSTSLILYKTQRFFIKERWISFPLISALFSLTFYFLSYPVL
                     AFFNRPLCLYNTALLADLQHVLMVDLPYGALLSLLAHKKSFTPQI"
     gene            93614..93907
                     /gene="ltuB"
                     /locus_tag="CTDLC_0080"
                     /db_xref="GeneID:12387555"
     CDS             93614..93907
                     /gene="ltuB"
                     /locus_tag="CTDLC_0080"
                     /codon_start=1
                     /transl_table=11
                     /product="Late transcription unit B protein"
                     /protein_id="YP_005812010.1"
                     /db_xref="GI:385244166"
                     /db_xref="GeneID:12387555"
                     /translation="MKKRSSRKLAQVIGRKTGNYFPASIEGETKKEHKHHYSTASKEK
                     ESLRKRAKEFDVLVHSLLDKHVPQNSDQVLIFTYQNGFVETDFHNFGRYSVKL"
     gene            93940..94260
                     /locus_tag="CTDLC_0081"
                     /db_xref="GeneID:12387556"
     CDS             93940..94260
                     /locus_tag="CTDLC_0081"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812011.1"
                     /db_xref="GI:385244167"
                     /db_xref="GeneID:12387556"
                     /translation="MGLTQNGKMGSLGVYIGLKDRPVIKISKIFITERLGMSACLGLQ
                     RCTLLHLPAFLFRLTYFLVFFARPRALRFFCPNVFIPIFCFNFIIHCFSLKLLLPIHW
                     FFVF"
     gene            94270..95952
                     /locus_tag="CTDLC_0082"
                     /db_xref="GeneID:12387557"
     CDS             94270..95952
                     /locus_tag="CTDLC_0082"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812012.1"
                     /db_xref="GI:385244168"
                     /db_xref="GeneID:12387557"
                     /translation="MSISGSGNVSPATPDFDPSILMGRQAASAHAAKEASGASKATET
                     SAAEQQALISSGTELDYVTDLQQSEGKYKKTLDKTSKSPKTKLKGNFSKVRAGTKGFL
                     TGFGTRASRISARKAENNGEGMSMIPSQMEYVKKKGNRVSPEMQNFYLGASGLWSPTS
                     DVSSITENCLGATALSTTPLLTTMQDPVSIEHLSSGEITALASFNPNVRTASLNEQTI
                     NAWTEARLGGEMVSTLLDPNIETSSLLRRAPTVSNEGMVDVSDMGNQTTSLSMEGLVN
                     TVVDDPASAEEEKKTGELSLEEMAAMAKMMAALLSSGQGMAVFIASSTPSSGLTQFPE
                     PKFSGTIPHHFSKKEDNETIWGLDSQIGSIAFDTRRENNASPLPTTSLHEEASYRFPV
                     GEAPLDVNEIPFAVQHSTVFSKETANTEQALIQNESLGEIPVSAEVVGQDTVSSAYQF
                     PSHLGMAVLASVPLSTEDYKTAVEHRKGPGGPPDPLIYQYRNVAVDPAIIFQSPSPFS
                     VSSRFSVQGKPEAVAVYNDDQEEAAGGNRDSDEGKDQEQDKTRETEDAGGDS"
     gene            95949..96431
                     /locus_tag="CTDLC_0083"
                     /db_xref="GeneID:12387558"
     CDS             95949..96431
                     /locus_tag="CTDLC_0083"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812013.1"
                     /db_xref="GI:385244169"
                     /db_xref="GeneID:12387558"
                     /translation="MRIIPFDPYGSMAFQAIAKDPQERKNGSISEKISEEIARNEALR
                     MALLAIADQEDKEKKQKHRFKILTKKQTRILLGQLRHFRLDFQKLQAGVVIEWSWDDK
                     SERSKSLGSRITRKSKKTICISAAAAQAIAHAAEAWVIARNEGILEMTLSLFQHKDNE
                     "
     gene            complement(96445..97530)
                     /locus_tag="CTDLC_0084"
                     /db_xref="GeneID:12387559"
     CDS             complement(96445..97530)
                     /locus_tag="CTDLC_0084"
                     /codon_start=1
                     /transl_table=11
                     /product="Phosphatidylcholine-hydrolyzing phospholipase D
                     (PLD) family"
                     /protein_id="YP_005812014.1"
                     /db_xref="GI:385244170"
                     /db_xref="GeneID:12387559"
                     /translation="MKKTKHLISKIMFSLVSLFVGGFLLKAPAPTQSADTFQTLIESK
                     EPVIFTKQCGDNVTQILCDAIDSAKKDIFLSIYDLSAPAITTSLKKQVSARIPVCIHY
                     QRISKNAEFSQSPYLTLGEHPPMHRKLMHQKTMAIDGELAWIGSANFTLASLEKSANL
                     IIGLKSAEICHFIKTQTSGRCFINNQLIEYFSFDGGSSAALETVLHHIRSAKESIQVG
                     MFALTLPQIIAELNAAQNCGVDVVILVDKGYKSFTVQQIKQLEHPSLSIYEKVTPYQL
                     HHKFGIFDKKTLITGSVNWSENGFLINTEDMIVIENLTEKQQSKIQAIWEGLVRECAL
                     YYSPDQEEKEKDPLIIPFPPSEKKQAA"
     misc_feature    complement(97045..97371)
                     /locus_tag="CTDLC_0084"
                     /note="Catalytic domain of phospholipase D superfamily
                     proteins; Region: PLDc_SF; cl15239"
                     /db_xref="CDD:265651"
     misc_feature    complement(96949..97350)
                     /locus_tag="CTDLC_0084"
                     /note="PLD-like domain; Region: PLDc_2; pfam13091"
                     /db_xref="CDD:257494"
     misc_feature    complement(order(97054..97056,97087..97089,97093..97095,
                     97132..97134,97138..97140))
                     /locus_tag="CTDLC_0084"
                     /note="putative active site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(97138..97140)
                     /locus_tag="CTDLC_0084"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(96547..96960)
                     /locus_tag="CTDLC_0084"
                     /note="Catalytic domain of EDTA-resistant nuclease Nuc,
                     vertebrate phospholipase D6, and similar proteins; Region:
                     PLDc_Nuc_like; cd09116"
                     /db_xref="CDD:197215"
     misc_feature    complement(96556..96921)
                     /locus_tag="CTDLC_0084"
                     /note="PLD-like domain; Region: PLDc_2; pfam13091"
                     /db_xref="CDD:257494"
     misc_feature    complement(order(96616..96618,96649..96651,96655..96657,
                     96694..96696,96700..96702))
                     /locus_tag="CTDLC_0084"
                     /note="putative active site [active]"
                     /db_xref="CDD:197215"
     misc_feature    complement(96700..96702)
                     /locus_tag="CTDLC_0084"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197215"
     gene            complement(97700..99439)
                     /gene="yigC"
                     /locus_tag="CTDLC_0085"
                     /db_xref="GeneID:12387560"
     CDS             complement(97700..99439)
                     /gene="yigC"
                     /locus_tag="CTDLC_0085"
                     /codon_start=1
                     /transl_table=11
                     /product="Putative quinone decarboxylase"
                     /protein_id="YP_005812015.1"
                     /db_xref="GI:385244171"
                     /db_xref="GeneID:12387560"
                     /translation="MFSLRSLVDYLRSQHELIDIHVPVDPHLEIAEIHRRVVEREGPA
                     LLFHQVKGSPFPVLTNLFGTRRRVDLLFPDLSSDLFEQIIHLLSSPPSFSSLWKHRSL
                     FKRGISALGMRKRHLRPSPFLYQDAPNLSQLPMLTSWPEDGGPFLTLPLVYTQSPENG
                     VPNLGMYRMQRFDKETLGLHFQIQKGGGAHFFEAEQKKQNLPVTVFLSGNPFLILSAI
                     APLPENVPELLFCSFLQNKKLSFVEKHPQSGHPLLCDSEFILTGEAVAGERRPEGPFG
                     DHFGYYSLTHDFPIFKCNCLYHKKDAIYPATVVGKPFQEDFFLGNKLQELLSPLFPLI
                     MPGVQDLKSYGEAGFHALAAAIVKERYWKEALRSALRILGEGQLSLTKFLWITDQSVD
                     LENFPSLLECVLERMNFDRDLLILSETANDTLDYTGSGFNKGSKGIFLGVGAPIRSLP
                     RRYRGPSLPGISQIGVFCRGCLVLETSLQQLDIPALLKEPHLADWPLVILVEDLSSAL
                     SSTKEFIWRTFTRSSPATDLHIPVSQITNHKVSYTPPMILNALMKPPYPKEVEADEAT
                     QNLVSSRWHSYFP"
     misc_feature    complement(98132..99424)
                     /gene="yigC"
                     /locus_tag="CTDLC_0085"
                     /note="3-octaprenyl-4-hydroxybenzoate carboxy-lyase;
                     Region: UbiD; cl00311"
                     /db_xref="CDD:260344"
     gene            complement(99565..99885)
                     /gene="rpmB"
                     /locus_tag="CTDLC_0086"
                     /db_xref="GeneID:12387561"
     CDS             complement(99565..99885)
                     /gene="rpmB"
                     /locus_tag="CTDLC_0086"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="YP_005812016.1"
                     /db_xref="GI:385244172"
                     /db_xref="GeneID:12387561"
                     /translation="MLQLPCREIAASEYRKVMSKKCALTGRKPRRGYSYAIRGISKKK
                     KGIGLKVTGRTKRRFFPNMMTKRLWSTEENRFLKLKISAAALRLVDKLGLDQVVARAK
                     SKGF"
     misc_feature    complement(99568..99834)
                     /gene="rpmB"
                     /locus_tag="CTDLC_0086"
                     /note="50S ribosomal protein L28; Reviewed; Region: rpmB;
                     PRK00359"
                     /db_xref="CDD:234736"
     gene            complement(99983..101566)
                     /gene="malQ"
                     /locus_tag="CTDLC_0087"
                     /db_xref="GeneID:12387562"
     CDS             complement(99983..101566)
                     /gene="malQ"
                     /locus_tag="CTDLC_0087"
                     /EC_number="2.4.1.25"
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="YP_005812017.1"
                     /db_xref="GI:385244173"
                     /db_xref="GeneID:12387562"
                     /translation="MPSLSQSRRIIQQSSIRKIWNQIDTSPKHGVCVPLFSLYTQESC
                     GIGEFLDLIPMIDWCISCGFQILQILPINDTGSCSSPYNSISSIALNPLHLSISALPY
                     KEEVPAAETRIREMQQLSQLPQVHYEKVRSMKRDFFQEYYRVCKQKKLTDHPDFYAFC
                     EQEKYWLHPYALFRSIREHLDNLPINHWPTTYTDLSQITEHERTFAEDIQFHSYLQYL
                     CFQQMTQVREHANCKSCLIKGDIPILISKDSCDVWFYRHYFSSSESVGAPPDLYNAEG
                     QNWHLPICNMKTLQQDNYLWWKERLRYAENFYSLYRLDHVVGLFRFWVWDESGCGRFE
                     PHDPKNYLAQGQDILSHLLTSSSMLPIGEDLGTIPSDVKRMLESFAVCGTRIPRWERN
                     WEGNGAYTPFDQYDPLSVTSLSTHDSSTLASWWKESPQESKLFAQFLGLPYSSTLSLH
                     NHTEILKLSHKTSSIFRINLINDYLALFPDLISKTPRYERINLPGTISKNNWVYRVKP
                     SIEDLSSHSKLNSLLEALF"
     misc_feature    complement(99986..101470)
                     /gene="malQ"
                     /locus_tag="CTDLC_0087"
                     /note="4-alpha-glucanotransferase; Region: Glyco_hydro_77;
                     pfam02446"
                     /db_xref="CDD:251298"
     gene            complement(101570..102010)
                     /gene="sycE"
                     /locus_tag="CTDLC_0088"
                     /db_xref="GeneID:12387563"
     CDS             complement(101570..102010)
                     /gene="sycE"
                     /locus_tag="CTDLC_0088"
                     /codon_start=1
                     /transl_table=11
                     /product="Type III secretion chaperone"
                     /protein_id="YP_005812018.1"
                     /db_xref="GI:385244174"
                     /db_xref="GeneID:12387563"
                     /translation="MQNQFEQLLTELGTQINSPLTPDSNNACIVRFGYNNVAVQIEED
                     GNSGFLVAGVMLGKLPENTFRQKIFKAALSINGSPQSNIKGTLGYGEISNQLYLCDRL
                     NMTYLNGEKLARYLVLFSQHANIWMQSISKGALPDLHALGMYHL"
     misc_feature    complement(101630..101992)
                     /gene="sycE"
                     /locus_tag="CTDLC_0088"
                     /note="Tir chaperone protein (CesT) family; Region: CesT;
                     pfam05932"
                     /db_xref="CDD:253463"
     gene            complement(102048..103313)
                     /gene="sctW"
                     /locus_tag="CTDLC_0089"
                     /db_xref="GeneID:12387564"
     CDS             complement(102048..103313)
                     /gene="sctW"
                     /locus_tag="CTDLC_0089"
                     /codon_start=1
                     /transl_table=11
                     /product="type III secreted protein SctW"
                     /protein_id="YP_005812019.1"
                     /db_xref="GI:385244175"
                     /db_xref="GeneID:12387564"
                     /translation="MTASGGAGGLGSTQTVDVARAQAAAATQDAQEVIGSQEASEASM
                     LKGCEDLINPAAATRIKKKGEKFESLEARRKPTADKAEKKSESTEEKGDTPLEDRFTE
                     DLSEVSGEDFRGLKNSFDDDSSPDEILDALTSKFSDPTIKDLALDYLIQTAPSDGKLK
                     STLIQAKHQLMSQNPQAIVGGRNVLLASETFASRANTSPSSLRSLYFQVTSSPSNCAN
                     LHQMLASYLPSEKTAVMEFLVNGMVADLKSEGPSIPPAKLQVYMTELSNLQALHSVNS
                     FFDRNIGNLENSLKHEGHAPIPSLTTGNLTKTFLQLVEDKFPSSSKAQKALNELVGPD
                     TGPQTEVLNLFFRALNGCSPRIFSGAEKKQQLASVITNTLDAINADNEDYPKPGDFPR
                     SSFSSTPPHAPVPQSEIPTSPTSTQPPSP"
     misc_feature    complement(102474..103205)
                     /gene="sctW"
                     /locus_tag="CTDLC_0089"
                     /note="HrpJ-like domain; Region: HrpJ; cl15454"
                     /db_xref="CDD:265703"
     gene            complement(103331..105457)
                     /gene="sctV"
                     /locus_tag="CTDLC_0090"
                     /db_xref="GeneID:12387565"
     CDS             complement(103331..105457)
                     /gene="sctV"
                     /locus_tag="CTDLC_0090"
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion inner membrane protein SctV"
                     /protein_id="YP_005812020.1"
                     /db_xref="GI:385244176"
                     /db_xref="GeneID:12387565"
                     /translation="MNKLLNFVSRTFGGDAALNMINKSSDLILAMWMLGVVLMIILPL
                     PPAMVDFMITINLAISVFLLMVALYIPSALQLSVFPSLLLITTMFRLGINISSSRQIL
                     LHAYAGHVIQAFGDFVVGGNYVVGFIIFLIITIIQFIVVTKGAERVAEVAARFRLDAM
                     PGKQMAIDADLRAGMIDATQARDKRSQIQKESELYGAMDGAMKFIKGDVIAGIVISLI
                     NIVGGLVIGVTMKGMTMAQAAHIYTLITIGDGLVSQIPSLLISLTAGIVTTRVSSDKD
                     TNLGKEISSQLVKEPRALLLSAGATLGIGFFKGFPLWSFALMAVLFAVLGILLITKKN
                     SPGKKGGASSTTTVGAADGAAASGENSDDYALTLPVILELGKDLSKLIQQRTKSGQSF
                     VDDMIPKMRQALYQDIGIRYPGIHVRTDSPSLEGNDYMILLNEVPYVRGKIPPNHVLT
                     NEVEENLSRYNLPFITYKNAAGLPSTWVSTDALTILEKAAIKYWSPLEVIILHLSYFF
                     HRNSQEFLGIQEVRSMIEFMERSFPDLVKEVTRLIPLQKLTEIFKRLVQEQISIKDLR
                     TILESLSEWAQTEKDTVLLTEYVRSSLKLYISFKFSQGQSAISVYLLDPEIEEMIRGA
                     IKQTSAGSYLALDPDSVNLILKSMRMTITPTPPGGQPPVLLTAIDVRRYVRKLIETEF
                     PDIAVISYQEVLPEIRIQPLGRIQIF"
     misc_feature    complement(103334..105406)
                     /gene="sctV"
                     /locus_tag="CTDLC_0090"
                     /note="Type III secretory pathway, component EscV
                     [Intracellular trafficking and secretion]; Region: EscV;
                     COG4789"
                     /db_xref="CDD:227127"
     gene            complement(105457..106539)
                     /gene="sctU"
                     /locus_tag="CTDLC_0091"
                     /db_xref="GeneID:12387566"
     CDS             complement(105457..106539)
                     /gene="sctU"
                     /locus_tag="CTDLC_0091"
                     /note="Type III secretion inner membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="SctU"
                     /protein_id="YP_005812021.1"
                     /db_xref="GI:385244177"
                     /db_xref="GeneID:12387566"
                     /translation="MGEKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSL
                     ASFFAKHLGSFLVSIFKTAPQNHDPHLAVYYLKNCLILILTVSLPLLGAVGFVGLLIG
                     FLIVGPTFSTEVFKPDLKKFNPIDNLKQKFKVKTFIELLKSIFKISGAALILYIVLKN
                     RVELVIETAGIPPLVTAQVFKEILYKAVTSIGIFFLVVAVIDLVYQRHSFAKELKMEK
                     FEVKQEFKDTEGNPEIKGRRRQIAQEIAYEDTSSQIKHASAVVSNPKDIAVAIGYMPE
                     KYKAPWIIAMGVNLRAKRIIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAV
                     GEILLYITSLNAQNLENKNINQFDNL"
     misc_feature    complement(105472..106539)
                     /gene="sctU"
                     /locus_tag="CTDLC_0091"
                     /note="type III secretion system protein; Validated;
                     Region: PRK06298"
                     /db_xref="CDD:180519"
     gene            106796..107896
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /db_xref="GeneID:12387567"
     CDS             106796..107896
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="YP_005812022.1"
                     /db_xref="GI:385244178"
                     /db_xref="GeneID:12387567"
                     /translation="MKMGQTECGIVGLPNVGKSGLFNALTGAQVASCNYPFCTIDPNV
                     GIVPVIDPRLETLARISQSQKIIYADMKFVDIAGLVKGAASGAGLGNRFLSHIRETHA
                     IAHVVRCFDNDDITHVSGKIDPEEDIAVINLELVLADFSSATSVREKLGKQAKGKKDI
                     GQLLPLLDRVVDHLESGNPVRTLSLSLEEKVLLKPYPFLTGKPMLYIANIDEDSLTDL
                     DNPYVQKVREIAKREEANVVPICVKLEEEILSLPLEERQDFLHSLGLQESGLNRLVAS
                     AYHTLGLISYFTTGPQETRAWTISKGATAAEAAGEIHSDIQRGFIRAEVVTMEDIVAY
                     DGRAGAREAGKLRAEGRDYIVQDGDIMLFLHN"
     misc_feature    106796..107893
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /note="GTP-binding protein YchF; Reviewed; Region:
                     PRK09601"
                     /db_xref="CDD:236583"
     misc_feature    106817..107638
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /note="YchF GTPase; Region: YchF; cd01900"
                     /db_xref="CDD:206687"
     misc_feature    106829..106852
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /note="G1 box; other site"
                     /db_xref="CDD:206687"
     misc_feature    order(106838..106840,106844..106855,107420..107425,
                     107429..107431,107516..107524)
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206687"
     misc_feature    106898..106921
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206687"
     misc_feature    106910..106912
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /note="G2 box; other site"
                     /db_xref="CDD:206687"
     misc_feature    order(107015..107044,107063..107092)
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206687"
     misc_feature    107018..107029
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /note="G3 box; other site"
                     /db_xref="CDD:206687"
     misc_feature    107420..107431
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /note="G4 box; other site"
                     /db_xref="CDD:206687"
     misc_feature    107516..107524
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /note="G5 box; other site"
                     /db_xref="CDD:206687"
     misc_feature    107642..107893
                     /gene="ychF"
                     /locus_tag="CTDLC_0092"
                     /note="The TGS domain, named after the ThrRS, GTPase, and
                     SpoT/RelA proteins where it occurs, is structurally
                     similar to ubiquitin. TGS is a small domain of about 50
                     amino acid residues with a predominantly beta-sheet
                     structure. There is no direct information...; Region: TGS;
                     cl15768"
                     /db_xref="CDD:265779"
     gene            complement(107905..108828)
                     /gene="ribF"
                     /locus_tag="CTDLC_0093"
                     /db_xref="GeneID:12387568"
     CDS             complement(107905..108828)
                     /gene="ribF"
                     /locus_tag="CTDLC_0093"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /note="Riboflavin kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="FMN adenylyltransferase"
                     /protein_id="YP_005812023.1"
                     /db_xref="GI:385244179"
                     /db_xref="GeneID:12387568"
                     /translation="MYLLIYVMQMDLFYSLLPSSNPVESVTIGFFDGCHLGHQALLSF
                     LTKFPSKSGVITFSQHPEHTLSNSPPETITSLEERVQLLAGCGIDYLAVLPFNQEIAN
                     QEAEPFIQSIYKTLRPSRIVLGYDSRLGKGGLGTAQTLRPFAASLGISLEEVPPLQIE
                     GTIVSSRKIRQFLRKKDLCSAEKFLGRPFSYTGKVAHGRGIGASFGYATINLPLTHSL
                     LPLGVYTCTIVIEGFSYAGVMNLGMAPTMQRHQLCLEAHILDFSEDLYDKSITVIPEQ
                     FLREEKLFSSKDELVLAIQEDIRQARLNKNR"
     misc_feature    complement(107923..108798)
                     /gene="ribF"
                     /locus_tag="CTDLC_0093"
                     /note="bifunctional riboflavin kinase/FMN
                     adenylyltransferase; Reviewed; Region: PRK05627"
                     /db_xref="CDD:235536"
     misc_feature    complement(108235..108756)
                     /gene="ribF"
                     /locus_tag="CTDLC_0093"
                     /note="FAD synthetase, N-terminal domain of the
                     bifunctional enzyme; Region: FAD_synthetase_N; cd02064"
                     /db_xref="CDD:185679"
     misc_feature    complement(order(108331..108339,108361..108363,
                     108451..108453,108715..108717,108724..108726,
                     108733..108744))
                     /gene="ribF"
                     /locus_tag="CTDLC_0093"
                     /note="active site"
                     /db_xref="CDD:185679"
     misc_feature    complement(107923..108279)
                     /gene="ribF"
                     /locus_tag="CTDLC_0093"
                     /note="Riboflavin kinase; Region: Flavokinase; smart00904"
                     /db_xref="CDD:214901"
     gene            complement(108767..109492)
                     /gene="truB"
                     /locus_tag="CTDLC_0094"
                     /db_xref="GeneID:12387569"
     CDS             complement(108767..109492)
                     /gene="truB"
                     /locus_tag="CTDLC_0094"
                     /EC_number="4.2.1.70"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine synthase B"
                     /protein_id="YP_005812024.1"
                     /db_xref="GI:385244180"
                     /db_xref="GeneID:12387569"
                     /translation="MELATESIEGVLLVDKPQGRTSFSLIRSLVRLIGVKKIGHAGTL
                     DPFATGVMVMLIGRKFTRLSDIMLFEDKEYAAVAHLGTTTDTYDCDGKIVGRSKKVPT
                     MDEVLTCTSYFQGEIQQVPPMFSAKKVQGKKLYEYARQGLSIERRFATVTVNLRLVKY
                     EYPRLHFVVQCSKGTYIRSIAHELGNMLGCGAYLEELRRLRSGSFSIDQCIDGNLLDE
                     PGFDVSPYLRDANGLILQPAPVL"
     misc_feature    complement(108857..109465)
                     /gene="truB"
                     /locus_tag="CTDLC_0094"
                     /note="Pseudouridine synthase, Escherichia coli TruB like;
                     Region: PseudoU_synth_EcTruB; cd02573"
                     /db_xref="CDD:211339"
     misc_feature    complement(order(108896..108898,108959..108976,
                     109046..109048,109109..109123,109271..109273,
                     109277..109279,109289..109291,109298..109303,
                     109310..109312,109355..109369,109373..109381,
                     109415..109417,109424..109426,109430..109432))
                     /gene="truB"
                     /locus_tag="CTDLC_0094"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:211339"
     misc_feature    complement(order(108959..108961,109358..109369))
                     /gene="truB"
                     /locus_tag="CTDLC_0094"
                     /note="active site"
                     /db_xref="CDD:211339"
     gene            complement(109530..109901)
                     /gene="rbfA"
                     /locus_tag="CTDLC_0095"
                     /db_xref="GeneID:12387570"
     CDS             complement(109530..109901)
                     /gene="rbfA"
                     /locus_tag="CTDLC_0095"
                     /codon_start=1
                     /transl_table=11
                     /product="Ribosome-binding factor A"
                     /protein_id="YP_005812025.1"
                     /db_xref="GI:385244181"
                     /db_xref="GeneID:12387570"
                     /translation="MAENRRMKKVNAMLREAIAKVILKDVKHPKISNRWITITRVSLS
                     RDLQSACVYVSIMPHENSQEETLAALKASAGFIAFQASKDLVLKYFPDLNFYVEDIFS
                     PQDHIESLLLKIAEQDKKTNP"
     misc_feature    complement(109542..109901)
                     /gene="rbfA"
                     /locus_tag="CTDLC_0095"
                     /note="ribosome-binding factor A; Validated; Region: rbfA;
                     PRK00521"
                     /db_xref="CDD:234787"
     gene            complement(109908..112604)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /db_xref="GeneID:12387571"
     CDS             complement(109908..112604)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /codon_start=1
                     /transl_table=11
                     /product="Bacterial Protein Translation Initiation Factor
                     2 (IF-2)"
                     /protein_id="YP_005812026.1"
                     /db_xref="GI:385244182"
                     /db_xref="GeneID:12387571"
                     /translation="MNRSANMEKVKLTKNLKLKIKNAQLTKAAGLDKLKQKLAQAGSS
                     DTKNSPASKAQTKEKSSKKTAGTPAPAPEVDSGATESTARRIRAKDRSSFAAEPTVTT
                     ALPGDASHLTLDAIPAMKAPEITSVTQKEQTLGECTDTSSVQQEEKKESSEETSPERV
                     EETLIIRTRTEPKSVVSIKPKFGPTGKHINHLLAKTFKAPAKETKAASTEETTQQQPR
                     QNDAASYNNKQQPSGTSSRPASSAPSYRRESTNNNNNAKRGSERDRSKRSDESVKAFT
                     GRDRYGLNEGSSEEDKWRKKRVHKTKKQAEEHVVQCPAHIKIALPITVKDLAAEMKLK
                     ASELIQKLFIHGMTYVVNDVLDSQTVVEYIGLEFGCTIEIDSSAKEKLCLLENAVRDE
                     VNATDPEKLIIRSPIVAFMGHVDHGKTTIIDALRQSNMAASEAGAITQHTGAFKCTTP
                     VGEITVLDTPGHEAFSAMRARGAEVCDIVVLVVAGDEGIKEQTIEAIEHAKGANITIV
                     VAINKCDKPNFNVETVYRQLAELDLLPEAWGGSIATINTSAKTGEGLQDLLEMLALQA
                     EVLELKADPSARARGLVIESELHKGLGAVATVLVQNGTLHLGEALVFNDCYGKVKTMH
                     DEHNQLLQSATPSTPVLITGLSAIPKAGDPFIVVKNEKVAKEIISARLAGQQRSAALQ
                     KKRPNFDAVLQNKKTLKLIIKADVQGSIEALAHSILNIRSEKVDVEILSSEVGDISES
                     DIRLASASKATVIGFHTSVESHAEPLIKNLNVKVCLFDIIYHAVDAIKEIMTGLLDPI
                     AEEKNLGAAEIKATFKSSQLGTIYGCLVTEGTIVRNQKIRIIRDKEVLWKGSLSSLKR
                     LKEDVKEVKKGMECGILLDNYQQAQVGDILQCYEVIYHPQKL"
     misc_feature    complement(109914..112013)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="translation initiation factor IF-2; Validated;
                     Region: infB; PRK05306"
                     /db_xref="CDD:235401"
     misc_feature    complement(111492..111644)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="Translation initiation factor IF-2, N-terminal
                     region; Region: IF2_N; pfam04760"
                     /db_xref="CDD:252785"
     misc_feature    complement(110898..111389)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="Initiation Factor 2 (IF2)/ eukaryotic Initiation
                     Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887"
                     /db_xref="CDD:206674"
     misc_feature    complement(111348..111371)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="G1 box; other site"
                     /db_xref="CDD:206674"
     misc_feature    complement(order(111027..111029,111039..111041,
                     111144..111149,111216..111221,111273..111278,
                     111324..111329,111336..111338,111345..111350,
                     111360..111362,111366..111368))
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="putative GEF interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:206674"
     misc_feature    complement(order(110955..110963,111057..111062,
                     111066..111071,111216..111218,111345..111365))
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206674"
     misc_feature    complement(111276..111296)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206674"
     misc_feature    complement(111288..111290)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="G2 box; other site"
                     /db_xref="CDD:206674"
     misc_feature    complement(111222..111233)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="G3 box; other site"
                     /db_xref="CDD:206674"
     misc_feature    complement(111171..111227)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206674"
     misc_feature    complement(111060..111071)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="G4 box; other site"
                     /db_xref="CDD:206674"
     misc_feature    complement(110955..110963)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="G5 box; other site"
                     /db_xref="CDD:206674"
     misc_feature    complement(110589..110870)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="This family represents the domain II of bacterial
                     Initiation Factor 2 (IF2) and its eukaryotic mitochondrial
                     homologue mtIF2. IF2, the largest initiation factor is an
                     essential GTP binding protein. In E. coli three natural
                     forms of IF2 exist in the cell; Region: IF2_mtIF2_II;
                     cd03702"
                     /db_xref="CDD:239673"
     misc_feature    complement(110238..110525)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="Translation-initiation factor 2; Region: IF-2;
                     pfam11987"
                     /db_xref="CDD:256778"
     misc_feature    complement(109941..110192)
                     /gene="infB"
                     /locus_tag="CTDLC_0096"
                     /note="mtIF2_IVc: this family represents the C2 subdomain
                     of domain IV of mitochondrial translation initiation
                     factor 2 (mtIF2) which adopts a beta-barrel fold
                     displaying a high degree of structural similarity with
                     domain II of the translation elongation factor...; Region:
                     mtIF2_IVc; cd03692"
                     /db_xref="CDD:239663"
     gene            complement(112543..113940)
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /db_xref="GeneID:12387572"
     CDS             complement(112543..113940)
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /codon_start=1
                     /transl_table=11
                     /product="N utilization substance protein A"
                     /protein_id="YP_005812027.1"
                     /db_xref="GI:385244183"
                     /db_xref="GeneID:12387572"
                     /translation="MKSKHKSRALGLCSVSIIFFAFFPLPIRGVLMNKDLVAIFDYME
                     REKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSINPRTGDIEVFCEKQIVEKCQNP
                     SKEIPLDKAREYDPDCQIGQYMDVPFISDQFGRIAAHAARQIIGQKLRHAERDVIYEE
                     YRHRKNEIISGVVKSFARGANLVVDLGKVEGLLPARFYPKTEKHKVGDKIYALLYEVQ
                     ESENGGAEVILSRNHPEFVKQLFVQEVPELEEGSVEIVKIAREAGYRTKMAVRSSNPQ
                     TDAVGAFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAILEDD
                     KVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRVSEYNKLLEIQRLQLAEFED
                     PRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASELASVPGISLELAYKILEQVS
                     KYGEGKVDEKPQVED"
     misc_feature    complement(112816..113838)
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /note="transcription termination factor NusA; Region:
                     NusA; TIGR01953"
                     /db_xref="CDD:233654"
     misc_feature    complement(113473..113838)
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /note="NusA N-terminal domain; Region: NusA_N; pfam08529"
                     /db_xref="CDD:254856"
     misc_feature    complement(113248..113451)
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /note="S1_NusA: N-utilizing substance A protein (NusA),
                     S1-like RNA-binding domain. S1-like RNA-binding domains
                     are found in a wide variety of RNA-associated proteins.
                     NusA is a transcription elongation factor containing an
                     N-terminal catalytic domain and three...; Region: S1_NusA;
                     cd04455"
                     /db_xref="CDD:239902"
     misc_feature    complement(order(113359..113361,113365..113367,
                     113392..113394,113419..113421))
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:239902"
     misc_feature    complement(order(113263..113265,113365..113367,
                     113371..113373,113398..113400,113413..113415))
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:239902"
     misc_feature    complement(113023..113244)
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /note="NusA_K homology RNA-binding domain (KH). NusA is an
                     essential multifunctional transcription elongation factor
                     that is universally conserved among prokaryotes and
                     archaea. NusA anti-termination function plays an important
                     role in the expression of...; Region: NusA_KH; cd02134"
                     /db_xref="CDD:239049"
     misc_feature    complement(113077..113088)
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /note="G-X-X-G motif; other site"
                     /db_xref="CDD:239049"
     misc_feature    complement(112831..113007)
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /note="NusA_K homology RNA-binding domain (KH). NusA is an
                     essential multifunctional transcription elongation factor
                     that is universally conserved among prokaryotes and
                     archaea. NusA anti-termination function plays an important
                     role in the expression of...; Region: NusA_KH; cd02134"
                     /db_xref="CDD:239049"
     misc_feature    complement(112879..112890)
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /note="G-X-X-G motif; other site"
                     /db_xref="CDD:239049"
     misc_feature    complement(112588..112746)
                     /gene="nusA"
                     /locus_tag="CTDLC_0097"
                     /note="Helix-hairpin-helix domain; Region: HHH_5;
                     pfam14520"
                     /db_xref="CDD:258660"
     gene            complement(113965..115674)
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /db_xref="GeneID:12387573"
     CDS             complement(113965..115674)
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1P"
                     /protein_id="YP_005812028.1"
                     /db_xref="GI:385244184"
                     /db_xref="GeneID:12387573"
                     /translation="MPKQADYTWGAKKNLDTIACLPEDVKQFKDLLYAMYGFTATEEE
                     PTSEVHPGAILKGTVVDISKDFVVVDVGLKSEGVIPMSEFIDSSEGLTVGAEVEVYLD
                     QTEDDEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDIGMEAFLP
                     GSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQIT
                     IGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSV
                     DKEKGRVALGLKQKEHNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEIEEGIEGLIHV
                     SEMSWVKNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIG
                     LRVTAEIKNLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSV
                     DKESKKITLGVKQLTPNPWDEIEVMFPVGSDISGVVTKITAFGAFVELQNGIEGLIHV
                     SELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKVSLSIKEFLVHGGDAGHDAEEESS
                     DRD"
     misc_feature    complement(114025..115635)
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="30S ribosomal protein S1; Reviewed; Region: rpsA;
                     PRK06299"
                     /db_xref="CDD:235775"
     misc_feature    complement(115327..115521)
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1)
                     domain. RPS1 is a component of the small ribosomal subunit
                     thought to be involved in the recognition and binding of
                     mRNA's during translation initiation. The bacterial RPS1
                     domain architecture...; Region: S1_RPS1_repeat_ec1_hs1;
                     cd05687"
                     /db_xref="CDD:240192"
     misc_feature    complement(order(115435..115437,115441..115443,
                     115471..115473,115495..115497))
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:240192"
     misc_feature    complement(115078..115275)
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1)
                     domain. RPS1 is a component of the small ribosomal subunit
                     thought to be involved in the recognition and binding of
                     mRNA's during translation initiation. The bacterial RPS1
                     domain architecture...; Region: S1_RPS1_repeat_ec2_hs2;
                     cd04465"
                     /db_xref="CDD:239911"
     misc_feature    complement(order(115195..115197,115201..115203,
                     115225..115227,115249..115251))
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:239911"
     misc_feature    complement(114817..115020)
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1)
                     domain. RPS1 is a component of the small ribosomal subunit
                     thought to be involved in the recognition and binding of
                     mRNA's during translation initiation. The bacterial RPS1
                     domain architecture consists...; Region:
                     S1_RPS1_repeat_ec3; cd05688"
                     /db_xref="CDD:240193"
     misc_feature    complement(order(114934..114936,114940..114942,
                     114967..114969,114991..114993))
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:240193"
     misc_feature    complement(114556..114771)
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="S1_like: Ribosomal protein S1-like RNA-binding
                     domain. Found in a wide variety of RNA-associated
                     proteins. Originally identified in S1 ribosomal protein.
                     This superfamily also contains the Cold Shock Domain
                     (CSD), which is a homolog of the S1 domain; Region:
                     S1_like; cl09927"
                     /db_xref="CDD:263921"
     misc_feature    complement(order(114676..114678,114682..114684,
                     114712..114714,114736..114738))
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:238094"
     misc_feature    complement(114295..114501)
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="S1_like: Ribosomal protein S1-like RNA-binding
                     domain. Found in a wide variety of RNA-associated
                     proteins. Originally identified in S1 ribosomal protein.
                     This superfamily also contains the Cold Shock Domain
                     (CSD), which is a homolog of the S1 domain; Region:
                     S1_like; cl09927"
                     /db_xref="CDD:263921"
     misc_feature    complement(order(114415..114417,114421..114423,
                     114451..114453,114475..114477))
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:238094"
     misc_feature    complement(114031..114243)
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="Ribosomal protein S1-like RNA-binding domain;
                     Region: S1; smart00316"
                     /db_xref="CDD:197648"
     misc_feature    complement(order(114154..114156,114160..114162,
                     114190..114192,114214..114216))
                     /gene="rpsA"
                     /locus_tag="CTDLC_0098"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:238094"
     gene            115919..116974
                     /gene="trxB"
                     /locus_tag="CTDLC_0099"
                     /db_xref="GeneID:12387574"
     CDS             115919..116974
                     /gene="trxB"
                     /locus_tag="CTDLC_0099"
                     /EC_number="1.8.1.9"
                     /codon_start=1
                     /transl_table=11
                     /product="Thioredoxin reductase"
                     /protein_id="YP_005812029.1"
                     /db_xref="GI:385244185"
                     /db_xref="GeneID:12387574"
                     /translation="MNVVCGKSRVGYSSFFCKSREPFSCVFKALLSKFILGVPMTHAK
                     LVIIGSGPAGYTAAIYASRALLTPVLFEGFFSGIAGGQLMTTTEVENFPGFPEGVLGH
                     QLMDLMKTQAQRFGTQVLSKDITAVDFSVRPFVLKSGKETFTCDACIIATGASAKRLS
                     IPGAGDNEFWQKGVTACAVCDGASPIFRDKDLFVVGGGDSALEEAMFLTRYGKRVFVV
                     HRRDTLRASKVMVNKAQANEKIFFLWNSEIVKISGDTLVRSIDIYNNVDETTTTMEAA
                     GVFFAIGHQPNTAFLGGQVALDENGYIITEKGSSRTSVPGVFAAGDVQDKYYRQAITS
                     AGSGCMAALDAERFLEN"
     misc_feature    116048..116965
                     /gene="trxB"
                     /locus_tag="CTDLC_0099"
                     /note="thioredoxin-disulfide reductase; Region:
                     TRX_reduct; TIGR01292"
                     /db_xref="CDD:233345"
     misc_feature    116054..116593
                     /gene="trxB"
                     /locus_tag="CTDLC_0099"
                     /note="NAD(P)-binding Rossmann-like domain; Region:
                     NAD_binding_8; cl19134"
                     /db_xref="CDD:267487"
     misc_feature    116492..116698
                     /gene="trxB"
                     /locus_tag="CTDLC_0099"
                     /note="Pyridine nucleotide-disulphide oxidoreductase;
                     Region: Pyr_redox; pfam00070"
                     /db_xref="CDD:249559"
     gene            116932..117339
                     /gene="acpS"
                     /locus_tag="CTDLC_0100"
                     /db_xref="GeneID:12387575"
     CDS             116932..117339
                     /gene="acpS"
                     /locus_tag="CTDLC_0100"
                     /EC_number="2.7.8.7"
                     /codon_start=1
                     /transl_table=11
                     /product="Holo-[acyl-carrier protein] synthase"
                     /protein_id="YP_005812030.1"
                     /db_xref="GI:385244186"
                     /db_xref="GeneID:12387575"
                     /translation="MHGSFRCRKIFRKLSIMFGVGIDIIEIDRIRKSYQTYGDRFLKK
                     IFTEGERVYCFSKSNPYASLAARFAAKEAVAKALGTGIGKLLKWKEIEMCRDSRQPQV
                     VVPEALLCSLGVKRVLLSVSHSREYATAVAIAE"
     misc_feature    117025..117336
                     /gene="acpS"
                     /locus_tag="CTDLC_0100"
                     /note="4'-phosphopantetheinyl transferase; Provisional;
                     Region: acpS; PRK00070"
                     /db_xref="CDD:234610"
     gene            complement(117340..117837)
                     /locus_tag="CTDLC_0101"
                     /db_xref="GeneID:12387576"
     CDS             complement(117340..117837)
                     /locus_tag="CTDLC_0101"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812031.1"
                     /db_xref="GI:385244187"
                     /db_xref="GeneID:12387576"
                     /translation="MAYSLFSKKYFRMISMIPRFSIACIPLAVWLFSGAKLLVKSLYL
                     ALHYQFSLVLSAELFAIAWILASIKHRFILSKSMLKQHELDAQLLIKKISPWTFIKRS
                     FLSKRMFVIISMSVISSLLHRSTTIPLLSFLMCSSVSYALFKTSLAHWKSLKELKSKY
                     SVYYY"
     gene            117936..118397
                     /locus_tag="CTDLC_0102"
                     /db_xref="GeneID:12387577"
     CDS             117936..118397
                     /locus_tag="CTDLC_0102"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812032.1"
                     /db_xref="GI:385244188"
                     /db_xref="GeneID:12387577"
                     /translation="MLRLFQHILCFLEEDPSFVDVPQELSFVNEAFSGSMRWEVGRML
                     GSLLLLLGIFGGGCLLFRRFLRSRGHLPSGNSSIKILDQRVLASKTSIYVIKVANKTL
                     VVAERGERVTLLSEFPPNTDLNELIQKDQKKPSTPRGEMLSGFLKQFKEKK"
     misc_feature    117984..118394
                     /locus_tag="CTDLC_0102"
                     /note="Flagellar biogenesis protein [Cell motility and
                     secretion]; Region: FliO; COG3190"
                     /db_xref="CDD:225731"
     gene            118432..119328
                     /locus_tag="CTDLC_0103"
                     /db_xref="GeneID:12387578"
     CDS             118432..119328
                     /locus_tag="CTDLC_0103"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD superfamily hydrolase/phosphatase"
                     /protein_id="YP_005812033.1"
                     /db_xref="GI:385244189"
                     /db_xref="GeneID:12387578"
                     /translation="MSLQKLLVTDIDGTITHQSHLLHDRVVKALHQYYDSGWQLFFLT
                     GRYFSYAYPLFQNFSVPFLLGSQNGSSVWSSTDKEFIYFRSLSRDFLYVLEKYFEDLD
                     LIACIESGASNRDVYFRKGLGKTSQELKAILDAVYFPTPEAARLLVDVQGHLSEEFSY
                     EDFAIAKFFGEREEVKKIMDRFIQSPEVSSQVTMNYMRWPFDFKYAVLLLTLKDVSKG
                     FAVDQVVQTFYKENKPFIMASGDDANDIDLLSRGDFKIVIQTAPEEMHGLADFLAPPA
                     KDFGILSAWEAGELRYKQLVNP"
     misc_feature    118441..119289
                     /locus_tag="CTDLC_0103"
                     /note="Predicted hydrolases of the HAD superfamily
                     [General function prediction only]; Region: Cof; COG0561"
                     /db_xref="CDD:223635"
     misc_feature    118447..119205
                     /locus_tag="CTDLC_0103"
                     /note="haloacid dehalogenase-like hydrolase; Region: HAD;
                     cl19137"
                     /db_xref="CDD:267490"
     misc_feature    118447..>118605
                     /locus_tag="CTDLC_0103"
                     /note="Haloacid dehalogenase-like hydrolases. The haloacid
                     dehalogenase-like (HAD) superfamily includes L-2-haloacid
                     dehalogenase, epoxide hydrolase, phosphoserine
                     phosphatase, phosphomannomutase, phosphoglycolate
                     phosphatase, P-type ATPase, and many others; Region:
                     HAD_like; cd01427"
                     /db_xref="CDD:119389"
     misc_feature    order(118459..118467,118561..118566)
                     /locus_tag="CTDLC_0103"
                     /note="active site"
                     /db_xref="CDD:119389"
     misc_feature    118459..118476
                     /locus_tag="CTDLC_0103"
                     /note="motif I; other site"
                     /db_xref="CDD:119389"
     misc_feature    118561..118563
                     /locus_tag="CTDLC_0103"
                     /note="motif II; other site"
                     /db_xref="CDD:119389"
     gene            complement(119318..120214)
                     /gene="fabI"
                     /locus_tag="CTDLC_0104"
                     /db_xref="GeneID:12387579"
     CDS             complement(119318..120214)
                     /gene="fabI"
                     /locus_tag="CTDLC_0104"
                     /EC_number="1.3.1.9"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-[actyl-carrier-protein]reductase (fabL)
                     (NADPH)"
                     /protein_id="YP_005812034.1"
                     /db_xref="GI:385244190"
                     /db_xref="GeneID:12387579"
                     /translation="MLKIDLTGKIAFIAGIGDDNGYGWGIAKMLAEAGATILVGTWVP
                     IYKIFSQSLELGKFNASRELSNGELLTFAKIYPMDASFDTPEDIPQEILENKRYKDLS
                     GYTVSEVVEQVKKHFGHIDILVHSLANSPEIAKPLLDTSRKGYLAALSTSSYSFISLL
                     SHFGPIMNAGASTISLTYLASMRAVPGYGGGMNAAKAALESDTKVLAWEAGRRWGVRV
                     NTISAGPLASRAGKAIGFIERMVDYYQDWAPLPSPMEAEQVGAAAAFLVSPLASAITG
                     ETLYVDHGANVMGIGPEMFPKD"
     misc_feature    complement(119336..120208)
                     /gene="fabI"
                     /locus_tag="CTDLC_0104"
                     /note="Enoyl-[acyl-carrier-protein]; Region: FabI;
                     COG0623"
                     /db_xref="CDD:223696"
     misc_feature    complement(119348..120193)
                     /gene="fabI"
                     /locus_tag="CTDLC_0104"
                     /note="Enoyl acyl carrier protein (ACP) reductase (ENR),
                     divergent SDR; Region: ENR_SDR; cd05372"
                     /db_xref="CDD:187630"
     misc_feature    complement(order(119522..119533,119537..119548,
                     119627..119629,119651..119653,119681..119689,
                     119762..119764,119828..119839,119975..119983,
                     120089..120091,120149..120154,120164..120172))
                     /gene="fabI"
                     /locus_tag="CTDLC_0104"
                     /note="NAD binding site [chemical binding]; other site"
                     /db_xref="CDD:187630"
     misc_feature    complement(order(119348..119359,119363..119401,
                     119405..119407,119420..119422,119429..119434,
                     119441..119443,119459..119470,119486..119488,
                     119495..119497,119579..119584,119588..119605,
                     119609..119614,119621..119626,119633..119638,
                     119648..119653,119657..119668,119672..119677,
                     119723..119725,119732..119734,119744..119746,
                     119753..119758,119765..119770,119777..119782,
                     119789..119809,119897..119899,119966..119977,
                     120119..120121))
                     /gene="fabI"
                     /locus_tag="CTDLC_0104"
                     /note="homotetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187630"
     misc_feature    complement(order(119585..119593,119597..119605,
                     119609..119614,119621..119626,119633..119638,
                     119648..119653,119660..119668,119672..119677,
                     119723..119725,119732..119737,119744..119746,
                     119753..119758,119765..119770,119777..119782,
                     119789..119809,119966..119977))
                     /gene="fabI"
                     /locus_tag="CTDLC_0104"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187630"
     misc_feature    complement(order(119504..119506,119513..119515,
                     119522..119527,119627..119629,119639..119641,
                     119651..119653,119681..119683,119825..119827,
                     119831..119833))
                     /gene="fabI"
                     /locus_tag="CTDLC_0104"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:187630"
     misc_feature    complement(order(119627..119629,119639..119641,
                     119681..119683,119759..119761))
                     /gene="fabI"
                     /locus_tag="CTDLC_0104"
                     /note="active site"
                     /db_xref="CDD:187630"
     gene            120452..122422
                     /locus_tag="CTDLC_0105"
                     /db_xref="GeneID:12387580"
     CDS             120452..122422
                     /locus_tag="CTDLC_0105"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812035.1"
                     /db_xref="GI:385244191"
                     /db_xref="GeneID:12387580"
                     /translation="MSFGIGSACSSLWSRLCGSSGSEGNSEEGVTSSGSDAASGSGAA
                     SAVCQQPTSSASTEGNGPSVQIPMVGTYSANVQSLVNQGHGGRGFVNRCYQKYSASGV
                     SFTSISIGGGDSVDGPLPSVVITQQPQGSGSSARGAGSLQMGAVLSGMSTLTGNSIFD
                     LFGESQITNLIGDAVDGTSTSSSPLRDATKGASTADLIALFLALGGSGSQGVNSPLVA
                     TLLSRYSLSGSLDTKEIQELLEALKKLQIAAPTLDGARPGLGECCTHLCGALSSSSNP
                     IVSAVGIAGTGLTELLMLAAKSQRVRRGAVLCHDACKPCCTSACGYPSCGCADGEGGC
                     GSFGALVCSCAELWCCQESPTEEANLEEYARKLEALEVAVGSTTFMLGLHNLGISFSD
                     LVKGNVPNLPTPEQLETACKEAVSSLGKLMMRMTQEKWLSRLYSCAGILDNPFWKGAI
                     CSGLAGGTYMLPLQDLTSRVKVVTSSGNKQEAENLDLELLLPALSSLHVTGTEEDCDD
                     EGQGLNTDQLTMLLCKFCSVLSAAIGNEHIPIWLTPKQMTEILCVCMVMSGISIVGGP
                     SNQSTEYQEFQRVVMQESLTHLRSSLRASKRTNNRTRAEVRKLVVKYTSQSAFLTLLE
                     GLRDPNSKESKDLMRECFASWAQKAGVQSSSI"
     gene            complement(122535..123446)
                     /gene="yceC"
                     /locus_tag="CTDLC_0106"
                     /db_xref="GeneID:12387581"
     CDS             complement(122535..123446)
                     /gene="yceC"
                     /locus_tag="CTDLC_0106"
                     /EC_number="4.2.1.70"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine synthase A"
                     /protein_id="YP_005812036.1"
                     /db_xref="GI:385244192"
                     /db_xref="GeneID:12387581"
                     /translation="MQEFIGTADRQIRLSSFLRTSLPHLPKKTILESVRYHGCRVNGR
                     IERFESYKLQPGDRVSLQIIEHSSPQLLWEDEHLCIYNKPAKQTSEDLAHQLNVHLVH
                     RLDRDTSGCILFAKHAKASSLITQLFKNREIDKRYIALVFGQPRQESGIITTYTAPCY
                     RRIGAVLFGNTDQNSGKITITKWEILTRYPKYTLLLCRPVTGRTHQIRLHMKTIGHPI
                     VGDVDYGNQEQPKNVVRTLLHAASLAFISPFSNEKIEVSSLTPSQDPYPFYADFSLKP
                     LKKPPINKVVLIQVVLEAKDSVSKRIV"
     misc_feature    complement(122673..123446)
                     /gene="yceC"
                     /locus_tag="CTDLC_0106"
                     /note="Pseudouridylate synthases, 23S RNA-specific
                     [Translation, ribosomal structure and biogenesis]; Region:
                     RluA; COG0564"
                     /db_xref="CDD:223638"
     misc_feature    complement(123201..123413)
                     /gene="yceC"
                     /locus_tag="CTDLC_0106"
                     /note="S4/Hsp/ tRNA synthetase RNA-binding domain; The
                     domain surface is populated by conserved, charged residues
                     that define a likely RNA-binding site;  Found in stress
                     proteins, ribosomal proteins and tRNA synthetases; This
                     may imply a hitherto unrecognized...; Region: S4; cd00165"
                     /db_xref="CDD:238095"
     misc_feature    complement(order(123285..123287,123291..123314,
                     123333..123335,123339..123344,123351..123356,
                     123360..123365,123369..123374,123408..123410))
                     /gene="yceC"
                     /locus_tag="CTDLC_0106"
                     /note="RNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238095"
     misc_feature    complement(122712..>123158)
                     /gene="yceC"
                     /locus_tag="CTDLC_0106"
                     /note="Pseudouridine synthase, RsuA/RluD family; Region:
                     PseudoU_synth_RluCD_like; cd02869"
                     /db_xref="CDD:211346"
     misc_feature    complement(order(122823..122825,123132..123143))
                     /gene="yceC"
                     /locus_tag="CTDLC_0106"
                     /note="active site"
                     /db_xref="CDD:211346"
     gene            123463..124602
                     /gene="mutY"
                     /locus_tag="CTDLC_0107"
                     /db_xref="GeneID:12387582"
     CDS             123463..124602
                     /gene="mutY"
                     /locus_tag="CTDLC_0107"
                     /EC_number="3.2.2.-"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="YP_005812037.1"
                     /db_xref="GI:385244193"
                     /db_xref="GeneID:12387582"
                     /translation="MCWYDFTRISMIRTAFFQDKKCFPLEALRSWFLESKRSFPWRDS
                     PTPYRVWVSEVMLQQTRAEVVVPYFLKWMERFPTLQDLAQARESDVVQLWEGLGYYSR
                     ARNLLAGARVITEIFGGEIPNDLALLSSIKGIGSYTANAILAFAFKQKNPAVDGNVLR
                     VMSRLFAIEESIDRMNTRREITGLCESLLPDQDPQVIAESFIELGARICKKQPLCEQC
                     PLRSFCTAYRQGTMEQYPVRNTRAAISRLFRAVVIVLYKDQVLMTKREEKEIMAGLYE
                     FPYYQLPKEDCCDIEKITHLVQKDYGETLHFVSSLPSQKQVFTRYRVTLFPHVFYTKY
                     SLPNSYTLAELSSLPSSSGHRRIKETFLVEYHKSLEKMVSCSGDK"
     misc_feature    123538..124308
                     /gene="mutY"
                     /locus_tag="CTDLC_0107"
                     /note="A/G-specific adenine glycosylase; Region: mutY;
                     TIGR01084"
                     /db_xref="CDD:130156"
     misc_feature    123604..124077
                     /gene="mutY"
                     /locus_tag="CTDLC_0107"
                     /note="endonuclease III; includes endonuclease III
                     (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA
                     glycosidases (Alka-family) and other DNA glycosidases;
                     Region: ENDO3c; cd00056"
                     /db_xref="CDD:238013"
     misc_feature    order(123637..123645,123652..123654,123766..123768)
                     /gene="mutY"
                     /locus_tag="CTDLC_0107"
                     /note="minor groove reading motif; other site"
                     /db_xref="CDD:238013"
     misc_feature    123853..123876
                     /gene="mutY"
                     /locus_tag="CTDLC_0107"
                     /note="helix-hairpin-helix signature motif; other site"
                     /db_xref="CDD:238013"
     misc_feature    order(123883..123885,124054..124056,124066..124068)
                     /gene="mutY"
                     /locus_tag="CTDLC_0107"
                     /note="substrate binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:238013"
     misc_feature    123925..123927
                     /gene="mutY"
                     /locus_tag="CTDLC_0107"
                     /note="active site"
                     /db_xref="CDD:238013"
     misc_feature    124084..124143
                     /gene="mutY"
                     /locus_tag="CTDLC_0107"
                     /note="iron-sulpphur binding domain in DNA-(apurinic or
                     apyrimidinic site) lyase (subfamily of ENDO3); Region:
                     FES; smart00525"
                     /db_xref="CDD:197771"
     misc_feature    124198..124545
                     /gene="mutY"
                     /locus_tag="CTDLC_0107"
                     /note="DNA glycosylase (MutY in bacteria and hMYH in
                     humans) is responsible for repairing misread  A*oxoG
                     residues to C*G by removing the inappropriately paired
                     adenine base from the DNA backbone. It belongs to the
                     Nudix hydrolase superfamily and is important...; Region:
                     DNA_Glycosylase_C; cd03431"
                     /db_xref="CDD:239523"
     misc_feature    order(124267..124275,124408..124410,124417..124422)
                     /gene="mutY"
                     /locus_tag="CTDLC_0107"
                     /note="DNA binding and oxoG recognition site [nucleotide
                     binding]"
                     /db_xref="CDD:239523"
     gene            124631..125407
                     /gene="ybgI"
                     /locus_tag="CTDLC_0108"
                     /db_xref="GeneID:12387583"
     CDS             124631..125407
                     /gene="ybgI"
                     /locus_tag="CTDLC_0108"
                     /codon_start=1
                     /transl_table=11
                     /product="NIF3-like protein"
                     /protein_id="YP_005812038.1"
                     /db_xref="GI:385244194"
                     /db_xref="GeneID:12387583"
                     /translation="MQPRFFYMNVSDLLNILNELLHPEYFSDYGPNGLQVGNAQTAIR
                     KVAVAVTADLATIEKAIACEANVLLVHHGIFWKGMPYSITGILYQRMQRLMEGNIQLI
                     AYHLPLDAHTTIGNNWKVARDLGWEQLESFGSSQPSLGVKGVFPEMEVHDFISQLSAY
                     YQTPVLAKALGGKKRVSSAALISGGAYREISEAKNQQVDCFITGNFDEPAWSLAHELA
                     IHFLAFGHTATEKVGPKALAQYLKGAGLESVVFLDTDNPF"
     misc_feature    124652..125404
                     /gene="ybgI"
                     /locus_tag="CTDLC_0108"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG0327"
                     /db_xref="CDD:223404"
     gene            complement(125420..126208)
                     /locus_tag="CTDLC_0109"
                     /db_xref="GeneID:12387584"
     CDS             complement(125420..126208)
                     /locus_tag="CTDLC_0109"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812039.1"
                     /db_xref="GI:385244195"
                     /db_xref="GeneID:12387584"
                     /translation="MFKLIKSAFLIACCIVGYFWIKKESIVEQWLSQQLHAQVTVGNI
                     SPGLSKTKIRHLCIHNPLSSDKYPYAVEIEYVSLKYSIVTMILSKKIDISDVILQGTS
                     LTVFPCEGSSKTNWSFFWDSFINHSNELTKFHSSQFESSVDTIPVFIKRCLCTNTRVS
                     GIKNNYKEIPTTPVPSLEFRGSLSCSPLPTLGETARALLYLIVEESFYHANVSGDIAR
                     PLSKQARAYFNSSLSDYSYLKKRGTFPSNLTNELEGFMKELLFR"
     gene            complement(126336..127970)
                     /gene="groEL"
                     /locus_tag="CTDLC_0110"
                     /db_xref="GeneID:12387585"
     CDS             complement(126336..127970)
                     /gene="groEL"
                     /locus_tag="CTDLC_0110"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone GroEL"
                     /protein_id="YP_005812040.1"
                     /db_xref="GI:385244196"
                     /db_xref="GeneID:12387585"
                     /translation="MVAKNIKYNEEARKKIQKGVKTLAEAVKVTLGPKGRHVVIDKSF
                     GSPQVTKDGVTVAKEVELADKHENMGAQMVKEVASKTADKAGDGTTTATVLAEAIYTE
                     GLRNVTAGANPMDLKRGIDKAVKVVVDQIRKISKPVQHHKEIAQVATISANNDAEIGN
                     LIAEAMEKVGKNGSITVEEAKGFETVLDIVEGMNFNRGYLSSYFATNPETQECVLEDA
                     LVLIYDKKISGIKDFLPVLQQVAESGRPLLIIAEDIEGEALATLVVNRIRGGFRVCAV
                     KAPGFGDRRKAMLEDIAILTGGQLISEELGMKLENANLAMLGKAKKVIVSKEDTTIVE
                     GMGEKEALEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEK
                     KDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPMLTNEDEQIGARIVLKALS
                     APLKQIAANAGKEGAIIFQQVMSRSANEGYDALRDAYTDMLEAGILDPAKVTRSALES
                     AASVAGLLLTTEALIAEIPEEKPAAAPAMPGAGMDY"
     misc_feature    complement(126381..127970)
                     /gene="groEL"
                     /locus_tag="CTDLC_0110"
                     /note="chaperonin GroEL; Reviewed; Region: groEL;
                     PRK12850"
                     /db_xref="CDD:237231"
     misc_feature    complement(126396..127961)
                     /gene="groEL"
                     /locus_tag="CTDLC_0110"
                     /note="GroEL_like type I chaperonin. Chaperonins are
                     involved in productive folding of proteins. They share a
                     common general morphology, a double toroid of 2 stacked
                     rings, each composed of 7-9 subunits. The symmetry of type
                     I is seven-fold and they are found...; Region: GroEL;
                     cd03344"
                     /db_xref="CDD:239460"
     misc_feature    complement(order(126399..126419,126426..126428,
                     126588..126590,126813..126815,126819..126821,
                     127200..127202,127284..127286,127380..127382,
                     127743..127745,127752..127754,127764..127766,
                     127788..127790,127794..127796,127824..127826,
                     127830..127835,127848..127850,127854..127865,
                     127896..127898,127947..127949,127959..127961))
                     /gene="groEL"
                     /locus_tag="CTDLC_0110"
                     /note="ring oligomerisation interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:239460"
     misc_feature    complement(order(126480..126482,126486..126488,
                     126603..126605,126726..126728,126777..126779,
                     127521..127523,127698..127700,127710..127712,
                     127872..127880))
                     /gene="groEL"
                     /locus_tag="CTDLC_0110"
                     /note="ATP/Mg binding site [chemical binding]; other site"
                     /db_xref="CDD:239460"
     misc_feature    complement(order(126564..126566,126573..126578,
                     126582..126584,126609..126611,126663..126665,
                     127644..127646))
                     /gene="groEL"
                     /locus_tag="CTDLC_0110"
                     /note="stacking interactions; other site"
                     /db_xref="CDD:239460"
     misc_feature    complement(order(126741..126746,126846..126848,
                     127392..127394,127413..127415,127548..127550))
                     /gene="groEL"
                     /locus_tag="CTDLC_0110"
                     /note="hinge regions; other site"
                     /db_xref="CDD:239460"
     gene            complement(128008..128316)
                     /gene="groES"
                     /locus_tag="CTDLC_0111"
                     /db_xref="GeneID:12387586"
     CDS             complement(128008..128316)
                     /gene="groES"
                     /locus_tag="CTDLC_0111"
                     /codon_start=1
                     /transl_table=11
                     /product="10 kDa chaperonin GROES"
                     /protein_id="YP_005812041.1"
                     /db_xref="GI:385244197"
                     /db_xref="GeneID:12387586"
                     /translation="MSDQATTLKIKPLGDRILVKREEEASTARGGIILPDTAKKKQDR
                     AEVLALGTGKKDDKGQQLPFEVQVGNIVLIDKYSGQELTVEGEEYVIVQMSEVIAVLQ
                     "
     misc_feature    complement(128014..128292)
                     /gene="groES"
                     /locus_tag="CTDLC_0111"
                     /note="Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10
                     cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase,
                     to assist the folding and assembly of proteins and is
                     found in eubacterial cytosol, as well as in the matrix of
                     mitochondria and chloroplasts. It...; Region: cpn10;
                     cd00320"
                     /db_xref="CDD:238197"
     misc_feature    complement(order(128017..128025,128071..128073,
                     128077..128079,128092..128094,128122..128124,
                     128185..128190,128269..128271,128278..128280,
                     128284..128286,128290..128292))
                     /gene="groES"
                     /locus_tag="CTDLC_0111"
                     /note="oligomerisation interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238197"
     misc_feature    complement(128203..128244)
                     /gene="groES"
                     /locus_tag="CTDLC_0111"
                     /note="mobile loop; other site"
                     /db_xref="CDD:238197"
     misc_feature    complement(order(128128..128130,128161..128163))
                     /gene="groES"
                     /locus_tag="CTDLC_0111"
                     /note="roof hairpin; other site"
                     /db_xref="CDD:238197"
     gene            complement(128488..130314)
                     /gene="pepF"
                     /locus_tag="CTDLC_0112"
                     /db_xref="GeneID:12387587"
     CDS             complement(128488..130314)
                     /gene="pepF"
                     /locus_tag="CTDLC_0112"
                     /EC_number="3.4.24.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Oligoendopeptidase F"
                     /protein_id="YP_005812042.1"
                     /db_xref="GI:385244198"
                     /db_xref="GeneID:12387587"
                     /translation="MTTATTSQTALRSRKDVPLSDCWDTKSLYASREVWQDELKKVGA
                     EGAPFWPHLSENNFDIKQPSSLRELLTTVFSIERTLDKLYVYAHLTYDEDIANQEAAA
                     DLKSITFLLTSFVEEISWIQPALIALPQQVVNMLLASPELQEYHFYLKKLFRLAPHTG
                     TSREEKILASSFPALEVAYKTFSSLTDSEIPFGEAVDSEGKSHPLSHALASLYMQSTD
                     RELRKNTYQKQCQRHHGYRLSLANLLNGKIQAHLFNAKARDYDSCLEAALFQNDISTS
                     VVTTLIDTVKQHTHLITEYFQLKQKALGLSDFHFYDVYAPLVASEASRHYSYQEAVTL
                     ICDSLSLLGNDYVETLRKGLTSDGWVDKYENTNKRSGAYSSGCYDSKPYILLNYTGTL
                     YDVSVVAHEGGHSMHSFLSHKHQSYHEAQYPIFLAEIASTLNETLLMEFLLKQAPSKE
                     EKIAILSRSLDTVFATLFRQTLFAAFELEMHSAAEQGLPLTEEFFSQSYEKLQRLFYG
                     DCITFDEHSCIEWARIPHFYYNFYVYQYATGIIASLCFSERILSGEEGAQEAYLTFLR
                     SGGSDFPIEILKKSGLDMTSSAPMLKAFSYIERKLEELASLL"
     misc_feature    complement(128491..130284)
                     /gene="pepF"
                     /locus_tag="CTDLC_0112"
                     /note="Oligoendopeptidase F [Amino acid transport and
                     metabolism]; Region: COG1164"
                     /db_xref="CDD:224086"
     misc_feature    complement(128503..130119)
                     /gene="pepF"
                     /locus_tag="CTDLC_0112"
                     /note="Peptidase family M3B Oligopeptidase F (PepF);
                     Region: M3B_PepF_3; cd09608"
                     /db_xref="CDD:189015"
     misc_feature    complement(order(128707..128709,128719..128721,
                     128737..128739,129031..129033,129103..129105,
                     129112..129117))
                     /gene="pepF"
                     /locus_tag="CTDLC_0112"
                     /note="active site"
                     /db_xref="CDD:189015"
     misc_feature    complement(order(129031..129033,129103..129105,
                     129115..129117))
                     /gene="pepF"
                     /locus_tag="CTDLC_0112"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:189015"
     gene            130617..133220
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /db_xref="GeneID:12387588"
     CDS             130617..133220
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /codon_start=1
                     /transl_table=11
                     /product="Clpb"
                     /protein_id="YP_005812043.1"
                     /db_xref="GI:385244199"
                     /db_xref="GeneID:12387588"
                     /translation="MEKFSDAVSEALEKAFELAKNSKHSYVTENHLLKSLLQNPGSLF
                     CLVIKDVHGNLGLLTSAVDDALRREPTVVEGTAVASPSPSLQQLLLNAHQEARSMGDE
                     YLSGDHLLLAFWRSTKEPFASWRKTVKTTSEALKELITKLRQGSRMDSPSAEENLKGL
                     EKYCKNLTVLAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPMLIGEPGVGKTAIAEGL
                     ALRIVQGDVPESLKEKHLYVLDMGALIAGAKYRGEFEERLKSVLKGVEASEGECILFI
                     DEVHTLVGAGATDGAMDAANLLKPALARGTLHCIGATTLNEYQKYIEKDAALERRFQP
                     IFVTEPSLEDAVFILRGLREKYEIFHGVRITEGALNAAVVLSYRYITDRFLPDKAIDL
                     IDEAASLIRMQIGSLPLPIDEKERELSALIVKQEAIKREQAPAYQEEAEDMQKAIDRV
                     KEELAALRLRWDEEKGLITGLKEKKNALENLKFAEEEAERTADYNRVAELRYSLIPSL
                     EEEIHLAEEALNQRDGRLLQEEVDERLIAQVVANWTGIPVQKMLEGESEKLLVLEESL
                     EERVVGQPFAIAAVSDSIRAARVGLSDPQRPLGVFLFLGPTGVGKTELAKALAELLFN
                     KEEAMIRFDMTEYMEKHSVSKLIGSPPGYVGYEEGGSLSEALRRRPYSVVLFDEIEKA
                     DKEVFNILLQIFDDGILTDSKKRKVNCKNALFIMTSNIGSQELADYCTKKGTIVDKEA
                     VLSVVAPALKNYFSPEFINRIDDILPFVPLTTEDIVKIVGIQMNRVALRLLERKISLT
                     WDDSLVLFLSEQGYDSAFGARPLKRLIQQKVVTMLSKALLKGDIKPGMAVELTMAKDV
                     VVFKIKTNPAV"
     misc_feature    130626..133193
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="ATP-dependent chaperone ClpB; Region:
                     chaperone_ClpB; TIGR03346"
                     /db_xref="CDD:234173"
     misc_feature    130659..130814
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="Clp amino terminal domain; Region: Clp_N;
                     pfam02861"
                     /db_xref="CDD:251573"
     misc_feature    130890..131045
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="Clp amino terminal domain; Region: Clp_N;
                     pfam02861"
                     /db_xref="CDD:251573"
     misc_feature    131154..131627
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    131229..131252
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(131232..131255,131445..131447,131556..131558)
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    131433..131450
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    131607..131609
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    132396..132773
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    132429..132452
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(132432..132455,132645..132647,132771..132773)
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    132633..132650
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    132924..133166
                     /gene="clpB"
                     /locus_tag="CTDLC_0113"
                     /note="C-terminal, D2-small domain, of ClpB protein;
                     Region: ClpB_D2-small; pfam10431"
                     /db_xref="CDD:255983"
     gene            133186..134706
                     /locus_tag="CTDLC_0114"
                     /db_xref="GeneID:12387589"
     CDS             133186..134706
                     /locus_tag="CTDLC_0114"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812044.1"
                     /db_xref="GI:385244200"
                     /db_xref="GeneID:12387589"
                     /translation="MCLKLKQIQLCRTFVCLRHWMCFIGIGSLLLPTALRATERMRKE
                     PIPLLDKQQSFWNVDPYCLESICACFVAHRDPLSAKQLMYLFPQLSEEDVSVFARCIL
                     SSKRPEYLFSKSEEELFAKLILPRVSLGVHRDDDLARVLVLAEPSAEEQKARYYSLYL
                     DVLALRAYVERERLASAAHGDPERIDLATIEAINTILFQEEGWRYPSKQEMFENRFSE
                     LAAVTDSKFGVCLGTVVLYQAVAQRLDLSLDPVTPPGHIYLRYKDKVNIETTSGGRHL
                     PTERYCECIKESQLKVRSQMELIGLTFMNRGAFFLQKGEFLQASLAYEQAQSYLSDEQ
                     ISDLLGITYVLLGKKAAGEALLKKSAEKTRRGSSIYDYFQGYISPEILGVLFADSGVT
                     YQETLEYRKKLVMLSKKYPKSGSLRLRLATTALELGLVKEGVQLLEESVKDAPEDLSL
                     RLQFCKILCNRHDYVRAKYHFDQAQALLIKEGLFSEKTSYTLLKTIGKKLSLFAPS"
     misc_feature    133261..134091
                     /locus_tag="CTDLC_0114"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG2912"
                     /db_xref="CDD:225464"
     misc_feature    133651..134085
                     /locus_tag="CTDLC_0114"
                     /note="Transglutaminase-like superfamily; Region:
                     Transglut_core2; pfam13369"
                     /db_xref="CDD:257696"
     misc_feature    134362..134616
                     /locus_tag="CTDLC_0114"
                     /note="Tetratricopeptide repeat domain; typically contains
                     34 amino acids
                     [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
                     X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
                     a variety of organisms including bacteria, cyanobacteria,
                     yeast, fungi; Region: TPR; cd00189"
                     /db_xref="CDD:238112"
     misc_feature    order(134371..134373,134383..134385,134392..134394,
                     134446..134448,134482..134484,134494..134496,
                     134503..134505,134548..134550,134584..134586,
                     134596..134598,134605..134607)
                     /locus_tag="CTDLC_0114"
                     /note="TPR motif; other site"
                     /db_xref="CDD:238112"
     misc_feature    order(134437..134442,134446..134451,134458..134463,
                     134539..134544,134551..134556,134563..134568)
                     /locus_tag="CTDLC_0114"
                     /note="binding surface"
                     /db_xref="CDD:238112"
     gene            134927..135361
                     /locus_tag="CTDLC_0115"
                     /db_xref="GeneID:12387590"
     CDS             134927..135361
                     /locus_tag="CTDLC_0115"
                     /codon_start=1
                     /transl_table=11
                     /product="Inclusion membrane protein D"
                     /protein_id="YP_005812045.1"
                     /db_xref="GI:385244201"
                     /db_xref="GeneID:12387590"
                     /translation="MRFMTKVYANSIQQERVVDRIALLERCLDPSNSLPTAKRLVAVA
                     VATILAVALLVVAGLLFSGVLCSPVSVLAASLFFGVGAFLLGGALVGGVLTTEAVTRE
                     RLHRSQTLMWNNLCCKTAEVEQKISTASANAKSNDKTRKLGE"
     misc_feature    <135044..>135205
                     /locus_tag="CTDLC_0115"
                     /note="Transmembrane subunit (TM) of Periplasmic Binding
                     Protein (PBP)-dependent ATP-Binding Cassette (ABC)
                     transporters which are involved in the uptake of
                     branched-chain amino acids (AAs), as well as TMs of
                     transporters involved in the uptake of...; Region:
                     TM_PBP1_branched-chain-AA_like; cl00454"
                     /db_xref="CDD:260432"
     gene            135444..135842
                     /locus_tag="CTDLC_0116"
                     /db_xref="GeneID:12387591"
     CDS             135444..135842
                     /locus_tag="CTDLC_0116"
                     /codon_start=1
                     /transl_table=11
                     /product="Inclusion membrane protein E"
                     /protein_id="YP_005812046.1"
                     /db_xref="GI:385244202"
                     /db_xref="GeneID:12387591"
                     /translation="MECVKQLCRNHLCLDSLTGPVRSVLTQGTTAEKVQLVVSCLGVV
                     CSIICLALGIAAAAVGVSCSGFAIGLGVIAILLGIVLFAISALDVLEDHGLVGCPFKL
                     PCKSSPANEPTVQFFKGKNGSADKVILVTQ"
     misc_feature    135573..>135704
                     /locus_tag="CTDLC_0116"
                     /note="IncA protein; Region: IncA; pfam04156"
                     /db_xref="CDD:252417"
     gene            135847..136161
                     /locus_tag="CTDLC_0117"
                     /db_xref="GeneID:12387592"
     CDS             135847..136161
                     /locus_tag="CTDLC_0117"
                     /codon_start=1
                     /transl_table=11
                     /product="Inclusion membrane protein F"
                     /protein_id="YP_005812047.1"
                     /db_xref="GI:385244203"
                     /db_xref="GeneID:12387592"
                     /translation="MGDVMIQSVKTESGLVEGHRGICDSLGRVVGALAKVAKLVVALA
                     ALVLNGALCVLSLVALCVGATPVGPLAVLVATTLASFLCAACVLFIAAKDRGWIASTN
                     KC"
     gene            136248..136751
                     /locus_tag="CTDLC_0118"
                     /db_xref="GeneID:12387593"
     CDS             136248..136751
                     /locus_tag="CTDLC_0118"
                     /codon_start=1
                     /transl_table=11
                     /product="Inclusion membrane protein G"
                     /protein_id="YP_005812048.1"
                     /db_xref="GI:385244204"
                     /db_xref="GeneID:12387593"
                     /translation="MICCDKVLSSVQSMPVIDKCSVTKCLQTAKQAAVLALSLFAVFA
                     SGSLSILSAAVLFSGTAAVLPYLLILTTALLGFVCAVIVLLRNLSAVVQSCKKRSPEE
                     IEGAARPSDQQESGGRLSEESASPQASPTSSTFGLESALRSIGDSVSGAFDDINKDNS
                     RSRSHSF"
     gene            complement(136917..137744)
                     /gene="incA"
                     /locus_tag="CTDLC_0119"
                     /db_xref="GeneID:12387594"
     CDS             complement(136917..137744)
                     /gene="incA"
                     /locus_tag="CTDLC_0119"
                     /codon_start=1
                     /transl_table=11
                     /product="Inclusion membrane protein A"
                     /protein_id="YP_005812049.1"
                     /db_xref="GI:385244205"
                     /db_xref="GeneID:12387594"
                     /translation="MPMTTPTLIVTPPSPPAPSYSANRVPQPSLMDKIKKIAAIASLI
                     LIGTIGFLALLGHLVGFLIAPQITIVLLALFIISLAGNALYLQKTANLHLYQDLQREV
                     GSLKEINFMLSVLQKEFLHLSKEFATTSKDLSAVSQDFYSCLQGFRDNYKGFESLLDE
                     YKNSTEEMRKLFSQEIIADLKGSVASLREEIRFLTPLAEEVRRLAHNQQSLTVVIEEL
                     KTIRDSLRDEIGQLSQLSKTLTSQIALQRKESSDLCSQIRETLSSPRKSASPSTKSS"
     misc_feature    complement(137070..137666)
                     /gene="incA"
                     /locus_tag="CTDLC_0119"
                     /note="IncA protein; Region: IncA; pfam04156"
                     /db_xref="CDD:252417"
     gene            complement(137816..138058)
                     /locus_tag="CTDLC_0120"
                     /db_xref="GeneID:12387595"
     CDS             complement(137816..138058)
                     /locus_tag="CTDLC_0120"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812050.1"
                     /db_xref="GI:385244206"
                     /db_xref="GeneID:12387595"
                     /translation="MAIIFGELRVSLYPPFLFTYISRQAHPKAILHCADKNFLESLHS
                     NQCFRIANATCSTLSYMQKLIVNPVNNINANALENM"
     gene            138142..138843
                     /gene="araD"
                     /locus_tag="CTDLC_0121"
                     /db_xref="GeneID:12387596"
     CDS             138142..138843
                     /gene="araD"
                     /locus_tag="CTDLC_0121"
                     /EC_number="5.1.3.1"
                     /codon_start=1
                     /transl_table=11
                     /product="Ribulose-phosphate 3-epimerase"
                     /protein_id="YP_005812051.1"
                     /db_xref="GI:385244207"
                     /db_xref="GeneID:12387596"
                     /translation="MREEAMKKQGVLVAPSIMGADLACIGREARNIEESGADLIHIDV
                     MDGHFVPNITFGPGVVAAINRSTELFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAA
                     ENIKEIISYIQKCGVQAGVAFSPETSIEFVTSFIPLCDVILLMSVHPGFCGQKFIPDT
                     IERIQFVKQAIQVLGREGSCLIEVDGGIDKESARACREAGADILVAASYFFEKDSINM
                     KEKVLLLQGEEHGAK"
     misc_feature    138175..138816
                     /gene="araD"
                     /locus_tag="CTDLC_0121"
                     /note="Ribulose-5-phosphate 3-epimerase (RPE). This enzyme
                     catalyses the interconversion of D-ribulose 5-phosphate
                     (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin
                     cycle (reductive pentose phosphate pathway) in
                     chloroplasts and in the oxidative pentose...; Region: RPE;
                     cd00429"
                     /db_xref="CDD:238244"
     misc_feature    order(138187..138189,138193..138195,138268..138270,
                     138367..138369,138586..138591,138595..138600,
                     138694..138696,138700..138702,138760..138765)
                     /gene="araD"
                     /locus_tag="CTDLC_0121"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:238244"
     misc_feature    order(138208..138210,138217..138219,138277..138279,
                     138283..138288,138292..138294,138298..138309,
                     138376..138378,138388..138390,138451..138453,
                     138457..138462,138514..138516,138523..138525,
                     138529..138531,138541..138543,138583..138585,
                     138610..138612,138616..138618,138628..138630)
                     /gene="araD"
                     /locus_tag="CTDLC_0121"
                     /note="hexamer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238244"
     misc_feature    order(138262..138264,138268..138270,138361..138363,
                     138694..138696)
                     /gene="araD"
                     /locus_tag="CTDLC_0121"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:238244"
     gene            138830..139387
                     /gene="efp_1"
                     /locus_tag="CTDLC_0122"
                     /db_xref="GeneID:12387597"
     CDS             138830..139387
                     /gene="efp_1"
                     /locus_tag="CTDLC_0122"
                     /codon_start=1
                     /transl_table=11
                     /product="Protein Translation Elongation Factor P (EF-P)"
                     /protein_id="YP_005812052.1"
                     /db_xref="GI:385244208"
                     /db_xref="GeneID:12387597"
                     /translation="MVLSSQLSVGMFISTKDGLYKVVSVSKVSGNKGDTFIKVSLQAA
                     GSDVTVERNFKAGQEVKEAQFEPRNLEYLYLEEDKYLFLDLGNYDKIYIPKEIMKDNA
                     MFLKAGVTVFALVHEGTVFSMELPHFLELMVAKTDFPGDSLSLSGGAKKALLETGVEV
                     LVPPFVEIGDVIKVDTRTCEYIQRV"
     misc_feature    138830..139384
                     /gene="efp_1"
                     /locus_tag="CTDLC_0122"
                     /note="elongation factor P; Provisional; Region: PRK12426"
                     /db_xref="CDD:183522"
     misc_feature    138839..139000
                     /gene="efp_1"
                     /locus_tag="CTDLC_0122"
                     /note="Elongation factor P (EF-P) KOW-like domain; Region:
                     EFP_N; pfam08207"
                     /db_xref="CDD:254661"
     misc_feature    139025..139207
                     /gene="efp_1"
                     /locus_tag="CTDLC_0122"
                     /note="S1_like: Ribosomal protein S1-like RNA-binding
                     domain. Found in a wide variety of RNA-associated
                     proteins. Originally identified in S1 ribosomal protein.
                     This superfamily also contains the Cold Shock Domain
                     (CSD), which is a homolog of the S1 domain; Region:
                     S1_like; cl09927"
                     /db_xref="CDD:263921"
     misc_feature    order(139046..139048,139070..139072,139103..139105,
                     139109..139111)
                     /gene="efp_1"
                     /locus_tag="CTDLC_0122"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:238094"
     misc_feature    139214..139381
                     /gene="efp_1"
                     /locus_tag="CTDLC_0122"
                     /note="S1_EF-P_repeat_2: Translation elongation factor P
                     (EF-P), S1-like RNA-binding domain, repeat 1. EF-P
                     stimulates the peptidyltransferase activity in the
                     prokaryotic 70S ribosome. EF-P enhances the synthesis of
                     certain dipeptides with...; Region: S1_EF-P_repeat_2;
                     cd05794"
                     /db_xref="CDD:240220"
     misc_feature    order(139301..139303,139352..139354,139367..139372)
                     /gene="efp_1"
                     /locus_tag="CTDLC_0122"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:240220"
     gene            139400..139894
                     /gene="accB"
                     /locus_tag="CTDLC_0123"
                     /db_xref="GeneID:12387598"
     CDS             139400..139894
                     /gene="accB"
                     /locus_tag="CTDLC_0123"
                     /EC_number="6.4.1.2"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="YP_005812053.1"
                     /db_xref="GI:385244209"
                     /db_xref="GeneID:12387598"
                     /translation="MDLKQIEKLMIAMGRNKMKRIVIKREGLELELERDTVPSIQEPV
                     FYDNRLFAGFSQERPIPTDQNLGNPIVKESIEKKESEAPAQGDFIVSPLVGTFYGSPS
                     PEAPAFIKPGDTVSEDTVVCIVEAMKVMNEVKAGMSGRVEEILITNGDPVQFGSKLFR
                     IVKA"
     misc_feature    139400..139885
                     /gene="accB"
                     /locus_tag="CTDLC_0123"
                     /note="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein subunit; Validated; Region: PRK06302"
                     /db_xref="CDD:235777"
     misc_feature    139664..139882
                     /gene="accB"
                     /locus_tag="CTDLC_0123"
                     /note="The biotinyl-domain or biotin carboxyl carrier
                     protein (BCCP) domain is present in all biotin-dependent
                     enzymes, such as acetyl-CoA carboxylase, pyruvate
                     carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
                     carboxylase, geranyl-CoA carboxylase; Region:
                     biotinyl_domain; cd06850"
                     /db_xref="CDD:133459"
     misc_feature    order(139751..139753,139778..139786,139805..139807)
                     /gene="accB"
                     /locus_tag="CTDLC_0123"
                     /note="carboxyltransferase (CT) interaction site; other
                     site"
                     /db_xref="CDD:133459"
     misc_feature    139781..139783
                     /gene="accB"
                     /locus_tag="CTDLC_0123"
                     /note="biotinylation site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:133459"
     gene            139898..141271
                     /gene="accC"
                     /locus_tag="CTDLC_0124"
                     /db_xref="GeneID:12387599"
     CDS             139898..141271
                     /gene="accC"
                     /locus_tag="CTDLC_0124"
                     /EC_number="6.3.4.14"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase"
                     /protein_id="YP_005812054.1"
                     /db_xref="GI:385244210"
                     /db_xref="GeneID:12387599"
                     /translation="MKKVLIANRGEIAIRIIRACHDLGLATVAVYSMADQEALHVLLA
                     DEAVCIGEAQAAKSYLKIANILAACEITGVDAVHPGYGFLSENANFASICESCGLTFI
                     GPSAESIATMGDKVAAKQLAKKIKCPVIPGSEGVVKDEVEGIRIAEKIGFPIVIKAVA
                     GGGGRGIRIVREKDEFYRAFTAARAEAEAGFNNPDVYIEKFIENPRHLEVQVIGDKHG
                     NYVYLGERDCTVQRRRQKLIEETPSPILTPEMRAKVGKVAVDLARSAGYFSVGTVEFL
                     LDKEKRFYFMEMNTRIQVEHTITEEVTGIDLLKAQISVAKGEKLPWKQKNIKFKGHVI
                     QCRINAEDPINNFTPSPGRLDYYLPPAGPAVRVDGACYSGYAIPPYYDSMIAKVITKG
                     KNREEAIAIMKRALKEFHIGGVHSTIPFHQFMLDNPKFLLSDYDINYVDQLLASGSTF
                     LNLADGS"
     misc_feature    139898..141232
                     /gene="accC"
                     /locus_tag="CTDLC_0124"
                     /note="acetyl-CoA carboxylase biotin carboxylase subunit;
                     Validated; Region: PRK08591"
                     /db_xref="CDD:236307"
     misc_feature    139901..140221
                     /gene="accC"
                     /locus_tag="CTDLC_0124"
                     /note="Carbamoyl-phosphate synthase L chain, N-terminal
                     domain; Region: CPSase_L_chain; pfam00289"
                     /db_xref="CDD:249744"
     misc_feature    140237..140860
                     /gene="accC"
                     /locus_tag="CTDLC_0124"
                     /note="ATP-grasp domain; Region: ATP-grasp_4; cl17255"
                     /db_xref="CDD:266590"
     misc_feature    140900..141220
                     /gene="accC"
                     /locus_tag="CTDLC_0124"
                     /note="Biotin carboxylase C-terminal domain; Region:
                     Biotin_carb_C; smart00878"
                     /db_xref="CDD:214878"
     gene            141494..141946
                     /gene="rplM"
                     /locus_tag="CTDLC_0125"
                     /db_xref="GeneID:12387600"
     CDS             141494..141946
                     /gene="rplM"
                     /locus_tag="CTDLC_0125"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="YP_005812055.1"
                     /db_xref="GI:385244211"
                     /db_xref="GeneID:12387600"
                     /translation="MEKRKDTKTTLAKASDDRNKAWYVVNAEGKTLGRLSSEVAKILR
                     GKHKVTFTPHVAMGDGVIVINAEKVRLTGAKRAQKVYHYYTGFISGMREVPFENMIAR
                     KPAYVIEHAVKGMLPKTKLGRRQMKSLRVLKGSSYAQYEAIKPIVLDA"
     misc_feature    141557..141898
                     /gene="rplM"
                     /locus_tag="CTDLC_0125"
                     /note="Ribosomal protein L13.  Protein L13, a large
                     ribosomal subunit protein, is one of five proteins
                     required for an early folding intermediate of 23S rRNA in
                     the assembly of the large subunit. L13 is situated on the
                     bottom of the large subunit, near the...; Region:
                     Ribosomal_L13; cd00392"
                     /db_xref="CDD:238230"
     misc_feature    order(141584..141586,141590..141595,141602..141604,
                     141611..141613,141623..141625,141707..141709,
                     141713..141715,141797..141802,141818..141826,
                     141830..141838,141842..141850,141854..141856,
                     141860..141862,141872..141874,141881..141886)
                     /gene="rplM"
                     /locus_tag="CTDLC_0125"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238230"
     misc_feature    141800..141802
                     /gene="rplM"
                     /locus_tag="CTDLC_0125"
                     /note="L3 interface [polypeptide binding]; other site"
                     /db_xref="CDD:238230"
     gene            141960..142361
                     /gene="rpsI"
                     /locus_tag="CTDLC_0126"
                     /db_xref="GeneID:12387601"
     CDS             141960..142361
                     /gene="rpsI"
                     /locus_tag="CTDLC_0126"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="YP_005812056.1"
                     /db_xref="GI:385244212"
                     /db_xref="GeneID:12387601"
                     /translation="MTKNMIQESVATGRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPL
                     EVQRATILAPLRMLGDVNSFDLIIRVSGGGVQGQVIATRLGLARAVLQEKEDMKQELK
                     AQGFLTRDPRKKERKKYGRKKARKSFQFSKR"
     misc_feature    141972..142358
                     /gene="rpsI"
                     /locus_tag="CTDLC_0126"
                     /note="30S ribosomal protein S9; Reviewed; Region: rpsI;
                     PRK00132"
                     /db_xref="CDD:178888"
     gene            complement(142409..143260)
                     /gene="ydhO"
                     /locus_tag="CTDLC_0127"
                     /db_xref="GeneID:12387602"
     CDS             complement(142409..143260)
                     /gene="ydhO"
                     /locus_tag="CTDLC_0127"
                     /EC_number="3.2.1.14"
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase"
                     /protein_id="YP_005812057.1"
                     /db_xref="GI:385244213"
                     /db_xref="GeneID:12387602"
                     /translation="MPHQVLLSPVCDLLSNAEGIETQVLFGERICNHNHRHYAYSQLV
                     FSSIWKPYPGDSLQNIPLFSSQLQPPNAVVCSQEAFLDPWHIPLPFAAPLHIDNQNQV
                     SLSPASIALLNSNSRSNYAKAFCSTKEIRFLNSSFSPRDLVSFAEQLIDTPYVWGGRC
                     IHKQLPRNGVDCSGYIQLLYQVTGRNIPRNARDQYRDCSPVKDFSSLPIGGLIFLKKA
                     STGQINHVMMKISEHEFIHAAEKIGKVEKVILGNRAFFKGNLFCSLGEPPIEAVFGVP
                     KNRKAFF"
     misc_feature    complement(142469..143164)
                     /gene="ydhO"
                     /locus_tag="CTDLC_0127"
                     /note="Cell wall-associated hydrolases
                     (invasion-associated proteins) [Cell envelope biogenesis,
                     outer membrane]; Region: Spr; COG0791"
                     /db_xref="CDD:223862"
     misc_feature    complement(<142547..142807)
                     /gene="ydhO"
                     /locus_tag="CTDLC_0127"
                     /note="NlpC/P60 family; Region: NLPC_P60; cl17555"
                     /db_xref="CDD:266746"
     gene            complement(143356..144093)
                     /gene="adk"
                     /locus_tag="CTDLC_0128"
                     /db_xref="GeneID:12387603"
     CDS             complement(143356..144093)
                     /gene="adk"
                     /locus_tag="CTDLC_0128"
                     /EC_number="2.7.4.3"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="YP_005812058.1"
                     /db_xref="GI:385244214"
                     /db_xref="GeneID:12387603"
                     /translation="MDRSPLFLIIMGAPGSGKGTQSKLLASQLSLLHISSGDLLRDAV
                     SKDTPLSQEIKSYLDQGKLLPDTLVWKLVHEKLDEFQQDTLLRRLSFLSRSENSAILD
                     GFPRTVTQAKLLHEFLSSYFPNYKVILLDISDEEVLNRLTSRYICPACQGIYNEQQGF
                     SSCPKCSVELIRRSDDTLEVILDRIQTYKQETQPVLDYYTEKQKLITIDANAPTQQVF
                     QSILDSLSASLVYQERDCCNCDCDDED"
     misc_feature    complement(143413..144078)
                     /gene="adk"
                     /locus_tag="CTDLC_0128"
                     /note="adenylate kinase; Reviewed; Region: adk; PRK00279"
                     /db_xref="CDD:234711"
     misc_feature    complement(143443..144072)
                     /gene="adk"
                     /locus_tag="CTDLC_0128"
                     /note="Adenylate kinase (ADK) catalyzes the reversible
                     phosphoryl transfer from adenosine triphosphates (ATP) to
                     adenosine monophosphates (AMP) and to yield adenosine
                     diphosphates (ADP). This enzyme is required for the
                     biosynthesis of ADP and is essential for...; Region: ADK;
                     cd01428"
                     /db_xref="CDD:238713"
     misc_feature    complement(order(143764..143766,143776..143781,
                     143785..143790,143902..143904,143971..143973,
                     143986..143988))
                     /gene="adk"
                     /locus_tag="CTDLC_0128"
                     /note="AMP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238713"
     misc_feature    complement(order(143530..143532,143542..143544,
                     143662..143664,143776..143778,143788..143790,
                     143971..143973))
                     /gene="adk"
                     /locus_tag="CTDLC_0128"
                     /note="ATP-AMP (Ap5A)-binding site [chemical binding];
                     other site"
                     /db_xref="CDD:238713"
     gene            144300..144944
                     /gene="glnP"
                     /locus_tag="CTDLC_0129"
                     /db_xref="GeneID:12387604"
     CDS             144300..144944
                     /gene="glnP"
                     /locus_tag="CTDLC_0129"
                     /note="protein GlnP"
                     /codon_start=1
                     /transl_table=11
                     /product="Glutamine transport system permease protein"
                     /protein_id="YP_005812059.1"
                     /db_xref="GI:385244215"
                     /db_xref="GeneID:12387604"
                     /translation="MEHYLLTAKLLLRGCGYTLLITAISLVCGFVLGWGIGTVNSRYF
                     PCRISKFLGNFYVVAVRGTPLFIQILIVYFGLPSLIKVNLSPLVAGLIALTLNSAAYL
                     AENVRAGINALPVQQWEAAKVLGYTGPQIFLHILYPQVFKNILPSLTNEFVSLIKESS
                     ILMVVGVPELTKVTKDIVARELNPMEMYLICAGLYLIMTSAFSYFARLSEKESA"
     misc_feature    144312..144932
                     /gene="glnP"
                     /locus_tag="CTDLC_0129"
                     /note="ABC-type amino acid transport system, permease
                     component [Amino acid transport and metabolism]; Region:
                     HisM; COG0765"
                     /db_xref="CDD:223836"
     misc_feature    144345..144908
                     /gene="glnP"
                     /locus_tag="CTDLC_0129"
                     /note="Transmembrane subunit (TM) found in Periplasmic
                     Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
                     transporters which generally bind type 2 PBPs. These types
                     of transporters consist of a PBP, two TMs, and two
                     cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
                     cd06261"
                     /db_xref="CDD:119394"
     misc_feature    order(144390..144395,144402..144407,144420..144422,
                     144456..144467,144471..144500,144507..144512,
                     144516..144518,144585..144590,144594..144596,
                     144600..144602,144609..144614,144618..144620,
                     144630..144635,144642..144644,144693..144695,
                     144735..144740,144747..144749,144768..144779,
                     144786..144791,144828..144833,144861..144866,
                     144873..144878,144882..144887,144894..144899,
                     144906..144908)
                     /gene="glnP"
                     /locus_tag="CTDLC_0129"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(144474..144518,144768..144785)
                     /gene="glnP"
                     /locus_tag="CTDLC_0129"
                     /note="conserved gate region; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(144516..144518,144570..144572,144786..144788,
                     144822..144824,144831..144833,144861..144863)
                     /gene="glnP"
                     /locus_tag="CTDLC_0129"
                     /note="putative PBP binding loops; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(144645..144683,144699..144704,144714..144716)
                     /gene="glnP"
                     /locus_tag="CTDLC_0129"
                     /note="ABC-ATPase subunit interface; other site"
                     /db_xref="CDD:119394"
     gene            144941..145642
                     /gene="glnQ"
                     /locus_tag="CTDLC_0130"
                     /db_xref="GeneID:12387605"
     CDS             144941..145642
                     /gene="glnQ"
                     /locus_tag="CTDLC_0130"
                     /note="protein GlnQ"
                     /codon_start=1
                     /transl_table=11
                     /product="Glutamine transport ATP-binding protein"
                     /protein_id="YP_005812060.1"
                     /db_xref="GI:385244216"
                     /db_xref="GeneID:12387605"
                     /translation="MTVEVKDLTVAVKGKEILSNVSFSLVPRRITLFIGRSGSGKTTI
                     LRSLVGLTPISSGSISVVGDPPGFVFQQPELFPHMTVLDNCAHPQMIVKKLREREAKD
                     KALDLLGMLELREYASSYPHQLSGGQRQRVAIARALALDMRTILFDEPTSALDPFSAS
                     KFLQIVLSLKEQGMTIAISTHDILFINQCLDRVYLVDKGQIIDAYDSLHDDPQANSFV
                     KQYLSLQEGPTGSDE"
     misc_feature    144941..145609
                     /gene="glnQ"
                     /locus_tag="CTDLC_0130"
                     /note="ABC-type polar amino acid transport system, ATPase
                     component [Amino acid transport and metabolism]; Region:
                     GlnQ; COG1126"
                     /db_xref="CDD:224051"
     misc_feature    144947..145543
                     /gene="glnQ"
                     /locus_tag="CTDLC_0130"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:266551"
     misc_feature    145043..145066
                     /gene="glnQ"
                     /locus_tag="CTDLC_0130"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    order(145052..145057,145061..145069,145151..145153,
                     145382..145387,145481..145483)
                     /gene="glnQ"
                     /locus_tag="CTDLC_0130"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    145142..145153
                     /gene="glnQ"
                     /locus_tag="CTDLC_0130"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    145310..145339
                     /gene="glnQ"
                     /locus_tag="CTDLC_0130"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    145370..145387
                     /gene="glnQ"
                     /locus_tag="CTDLC_0130"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    145394..145405
                     /gene="glnQ"
                     /locus_tag="CTDLC_0130"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    145469..145489
                     /gene="glnQ"
                     /locus_tag="CTDLC_0130"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            complement(145645..149061)
                     /locus_tag="CTDLC_0131"
                     /db_xref="GeneID:12387606"
     CDS             complement(145645..149061)
                     /locus_tag="CTDLC_0131"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane spanning protein"
                     /protein_id="YP_005812061.1"
                     /db_xref="GI:385244217"
                     /db_xref="GeneID:12387606"
                     /translation="MKRSPWYKIFGYYLLVGVPLALLALLPKFFSSESGKYLFLSVLN
                     KETGLQFEIEQLHLSWFGSQTAKKIRIRGIDSDSEIFAAEKIIVKGSLPRLLLYRFPK
                     ALTLTGWSLQIDESLSMNSPSLYHLDPGVLLSKIERSDITSELGSITMKTINGSTLSV
                     SGFYVKKTAEQLLIRALTKENDVPGSVAVEGALSPNFVLNVELSSVPASLFKLFIASP
                     SLDRILSTENLINLTAKAHQEKDSTLITLTAEGNQISAKLRGYVRDRAFLITQGGASS
                     VLLQPTITSRILSELSPLDTPIRSQEAYLFISEAKLPLSISKWSASDFSLQANLPQIS
                     VDTPDPNLSIRTENTKISIRKSDHLTVIRSSSSAILGGASPSYIHSTLSMDNHKHVAE
                     FHIQHSLLPHTYLRALLPKPIEINTPLEVPYYTLDIKGKYRNTQLSCEALLDNPLLRL
                     SCNLSGPLYALQFSGEGAYTLSERWKERLAPHFLQIQAIFSGKMHFSQKHVFFPKLSG
                     KLIAGDNEIFIHGKFGRASEEMKPSNSSLLVYGTLSSLPLDLYSPKFAPLQMTRYSFS
                     LHSDGGKALLKGNVKLFITDPESPHLEETKILIPDIVISSLDPSAPWTADNISVQASG
                     ELLQLPVDRLIRLQHKDLSLSRYIGETSEASFQLLYSPDKEETVDISSRFKTDALTGD
                     FRFVMNKELSLTEKTHGSLQWEISPERYSSFFEKASCPPSCILHRPTTFRLDLSKISC
                     LDKKTGYSCLSLLSQGGIEGKLSSTPLVFYDHLSKENFIVNNIGGSVYAQNVNDLIQY
                     QLNGNCLAPNQDNKTPVSFIIEGEARNIFSDETRACSQTATWVNIPTSFITGIFPISP
                     GVRSKLTSLAGPKIHVSIHNDFSRGEGPVTIKVDSENLTAYFPLVLTEQAILLEDDLT
                     ASLHINEEINKAFLREFNPLIAEGGAYSKHPVSLRVNKQNFYLPIKPYSFENFRIQSA
                     SLDFGKIEIANTGTMQDLFQFLDVEAEQQRVESWFTPIFFSVQKGQIICKRFDALIDG
                     RIRLALWGKTDIVRERLAMTLGIDPELIKKLFRNTMLKTKNFFLIKIRGPISSPEIDW
                     SSAYARIALLKSYTIAGPLNSLADKLFSSLGEPTPTQTVSPLPWEVSETE"
     gene            complement(149058..150335)
                     /locus_tag="CTDLC_0132"
                     /db_xref="GeneID:12387607"
     CDS             complement(149058..150335)
                     /locus_tag="CTDLC_0132"
                     /EC_number="3.1.-.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Ribonuclease BN"
                     /protein_id="YP_005812062.1"
                     /db_xref="GI:385244218"
                     /db_xref="GeneID:12387607"
                     /translation="MLRPPSFLKKLLSSVRNNFIIKSILKAPKVLYHNEASKEACVLS
                     YYGLFSCVPILVFFLRLSQYLFISLDWKEWLLLHFPDYKAPILAIIEAAYSTTSNIGV
                     VLVSSFFVFCWAGILMLQSLEDGLNKIFCSGITQASLKRLISYLVITLVSPMIFIIVC
                     GSWIYITQILPINYPQLFSFSHSMAFIYIVSRLLPYALLYGILFCCYAFLSRVPTKKS
                     AAFFAATIAGSAWILSQKIFFCLQLHLFNYSFTYGALVALPSFLLLLYLYAIIYLFGG
                     ALTFLFQNKGFSILIPKEEIFPSSYFKFILCVYVLSLITEHFDNALPPPSANYLANKA
                     KASIGETSQCLDILEREGMILKYKEGYKPSHNIANLHINTIFDQLTKSPAFSKICSPS
                     LIPIQDALTHILTEIKKNSHNLSLSEIAKKVNS"
     misc_feature    complement(149472..150317)
                     /locus_tag="CTDLC_0132"
                     /note="Ribonuclease BN family enzyme [Replication,
                     recombination, and repair]; Region: Rbn; COG1295"
                     /db_xref="CDD:224214"
     gene            complement(150413..151216)
                     /locus_tag="CTDLC_0133"
                     /db_xref="GeneID:12387608"
     CDS             complement(150413..151216)
                     /locus_tag="CTDLC_0133"
                     /codon_start=1
                     /transl_table=11
                     /product="Metallothionein family protein"
                     /protein_id="YP_005812063.1"
                     /db_xref="GI:385244219"
                     /db_xref="GeneID:12387608"
                     /translation="MSRKPASNSSRNTKRSSDTSWEVIAQDYNKAVDRDGHFYHKEVI
                     LPNLLSKLHISRSSSLVDVGCGQGILEKHLPKHLPYLGIDLSPSLLRFAKKSASSKSR
                     RFLHHDMTQPVPADHHEQFSHATAILSLQNMESPEQAIAHTANLLAPQGRLFIVLNHP
                     CFRIPRLSSWLYDEPKKLLSRKIDRYLSPVAVPIVVHPGEKHSETTYSFHFPLSYWVQ
                     ALSNHNLLIDSMEEWISPKKSSGKRARAENLCRKEFPLFLFISALKISK"
     misc_feature    complement(150746..151039)
                     /locus_tag="CTDLC_0133"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    complement(order(150836..150838,150890..150898,
                     150962..150967,151010..151030))
                     /locus_tag="CTDLC_0133"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            151671..152084
                     /locus_tag="CTDLC_0134"
                     /db_xref="GeneID:12387609"
     CDS             151671..152084
                     /locus_tag="CTDLC_0134"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812064.1"
                     /db_xref="GI:385244220"
                     /db_xref="GeneID:12387609"
                     /translation="MACCACVYGYDEICCREETAEKVVAVAVDCVLFHIAAAITTAVS
                     AVWLLIRLIACAIHNYCSPASERVNFFPITESRAEWFSLIPVLGPMVVAAVVYSKARE
                     EGYGHLDSLVCAMQSPWMLLDSLRLNRSELKIVMV"
     gene            152143..152322
                     /locus_tag="CTDLC_013501"
                     /db_xref="GeneID:12387610"
     CDS             152143..152322
                     /locus_tag="CTDLC_013501"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812065.1"
                     /db_xref="GI:385244221"
                     /db_xref="GeneID:12387610"
                     /translation="MVSFDLNDPVRNTDNHYRNINRMLNSATCAAGGIGLLTPVVCSP
                     RELSVLLKGLLVPKT"
     gene            152226..153224
                     /locus_tag="CTDLC_013502"
                     /db_xref="GeneID:12387611"
     CDS             152226..153224
                     /locus_tag="CTDLC_013502"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812066.1"
                     /db_xref="GI:385244222"
                     /db_xref="GeneID:12387611"
                     /translation="MCCWRHRIVNTSGMLSKGAFCFAQGPSSAEDLGHRIQHFVACSG
                     PAAGFYSLSNERIMFEEAAVPSVLEAVEATFWISAFARLRGNEPSTCDTVMMSCVIGC
                     ISLVCGAMFVAIVSCAVKISRIVRTMTQAHALRETIQRQLAARATDMRSAYSKLKGII
                     AIRALNEVERGHRKLRNKMITAFVANALITLAFCALLASAVIAAFFFGAASAGLASVF
                     FGCLWGGIGALAVGVLVGIVSGICQRNYKVEAARCIQRGALYALVLEKMQRFPKEFLK
                     DGVAKSVVAIQAGESLDTGELAWEEMPSITACLGREGMDAQAYSFLSASPLDARIE"
     gene            153275..154033
                     /locus_tag="CTDLC_0136"
                     /db_xref="GeneID:12387612"
     CDS             153275..154033
                     /locus_tag="CTDLC_0136"
                     /EC_number="3.1.1.1"
                     /codon_start=1
                     /transl_table=11
                     /product="Carboxylesterase"
                     /protein_id="YP_005812067.1"
                     /db_xref="GI:385244223"
                     /db_xref="GeneID:12387612"
                     /translation="MLPKALDQLLGRYMSYSFFRRKLAGIEFIECPGDPEAPVIIFCH
                     GYGASADHLTFFPTMCVCANLRPTWVFPHGIEQLPYQLGGGRAWFPLDTVLFEKLISS
                     QEITPDTDRLYQQLLDVDFEKPKQALEGLIHELERDRSEVIIGGFSQGAMMTTHLMLS
                     SRLPYRGALICSGAAVPNQSWEENASLCGKTPYIQSHGYDDPILPYFLGERLYKVLTA
                     SLKGEMVSFHGGHEIPVVMMQKIQESIALWSQLT"
     misc_feature    153332..154024
                     /locus_tag="CTDLC_0136"
                     /note="Predicted esterase [General function prediction
                     only]; Region: COG0400"
                     /db_xref="CDD:223477"
     misc_feature    153353..154021
                     /locus_tag="CTDLC_0136"
                     /note="Phospholipase/Carboxylesterase; Region:
                     Abhydrolase_2; pfam02230"
                     /db_xref="CDD:251171"
     gene            154052..154897
                     /gene="ywlC"
                     /locus_tag="CTDLC_0137"
                     /db_xref="GeneID:12387613"
     CDS             154052..154897
                     /gene="ywlC"
                     /locus_tag="CTDLC_0137"
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="YP_005812068.1"
                     /db_xref="GI:385244224"
                     /db_xref="GeneID:12387613"
                     /translation="MFSQQIEESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKH
                     RSSQKALSVYVSSLEELEAVAQQSLGASSRKIIQKFLPGPLTLITKHNNPRFPQKTLG
                     FRIVNHPIVQQIIQKVGPFLATSANLSGFPSAVSADEVKQDFPEEDIVMISGECSIGL
                     ESTVIDPEERIVYRESAISIAEIETVLGAPCANLSKELGFREKIGIHVVKTPADLCSF
                     LLSRPHFKGVICHQPHPHTFYSVLRQALRSPTQEIIFVYDLCNTEYPILSRFLGVSYD
                     SGYAL"
     misc_feature    154058..154621
                     /gene="ywlC"
                     /locus_tag="CTDLC_0137"
                     /note="Putative translation factor (SUA5) [Translation,
                     ribosomal structure and biogenesis]; Region: SUA5;
                     COG0009"
                     /db_xref="CDD:223088"
     gene            154875..155822
                     /locus_tag="CTDLC_0138"
                     /db_xref="GeneID:12387614"
     CDS             154875..155822
                     /locus_tag="CTDLC_0138"
                     /EC_number="3.4.13.19"
                     /codon_start=1
                     /transl_table=11
                     /product="Microsomal dipeptidase"
                     /protein_id="YP_005812069.1"
                     /db_xref="GI:385244225"
                     /db_xref="GeneID:12387614"
                     /translation="MIVDMHCDMLSHKNFSSSDPAVRSSPDQLIEGGVGLQACALFTE
                     SQECTTLDEQNQLFFSLIEQDERLTPLSYEPQVESSLQVVRSIENASGLGSDAQPLQE
                     LFHKLLLLHEQGPLAYIGLVWNFANRFGGGILEPKRLSRDGKNLLELLHALAIPVDLS
                     HCSDPLADDILDFTADKMPDMFVLASHSNFRAVQDIERNLLDVHAKEIFARDGVIGLN
                     GVNYFVGASLEDIKKHIAHAQELGILDSLVLGTDFFYTEEEKFFPNFSTAKDHPKLHA
                     LIKEAIPIDKAQSLLEERAQRFLNRVVSAQKKVVNHIAF"
     misc_feature    154875..155798
                     /locus_tag="CTDLC_0138"
                     /note="Zn-dependent dipeptidase, microsomal dipeptidase
                     homolog [Amino acid transport and metabolism]; Region:
                     COG2355"
                     /db_xref="CDD:225230"
     misc_feature    order(154890..154892,154896..154898,155352..155354,
                     155433..155435,155628..155630)
                     /locus_tag="CTDLC_0138"
                     /note="active site"
                     /db_xref="CDD:238617"
     gene            complement(155819..157099)
                     /gene="oppA"
                     /locus_tag="CTDLC_0139"
                     /db_xref="GeneID:12387615"
     CDS             complement(155819..157099)
                     /gene="oppA"
                     /locus_tag="CTDLC_0139"
                     /note="OppA"
                     /codon_start=1
                     /transl_table=11
                     /product="Oligopeptide-binding protein"
                     /protein_id="YP_005812070.1"
                     /db_xref="GI:385244226"
                     /db_xref="GeneID:12387615"
                     /translation="MYVRSIFFSIIAFLTVGCSFSPPESGLIIAIHDDPRSLSPEKGE
                     NAFHFSLSKALFATLFREELSGLTPALVSSYQVSEDGRFYRFCIRKDAKWSDGSLLLA
                     EDVIAAWEHTKQAGRYSLLFEKLSFRASSSSEILIELKEPEPQLLAILASPFFAVYRP
                     ENPFLSSGPFMPKTYVQGQTLVLQKNPYYYDHAHVELHSIDFRIIPNIYTALHLLRRG
                     DVDWVGQPWHQGIPFELRTTSALYTHYSVDGTFWLILNPKDPVLSSLSNRQRLIAAVQ
                     KEKLVKQALGTQYRVAESSPSPEGIIAHQEASTPFPGKITLIYPNNITRCQRLAEVLQ
                     EQCRDAGIQLTLEGLEYHVFVQKRATQDFSVSTATSIAFHPLAKSKFDQTALDNFTCL
                     PLYHIEYDYILSRPLDQIVHYPSGSVDLTYAHFH"
     misc_feature    complement(<156020..157093)
                     /gene="oppA"
                     /locus_tag="CTDLC_0139"
                     /note="ABC-type dipeptide transport system, periplasmic
                     component [Amino acid transport and metabolism]; Region:
                     DdpA; COG0747"
                     /db_xref="CDD:223818"
     misc_feature    complement(155975..156901)
                     /gene="oppA"
                     /locus_tag="CTDLC_0139"
                     /note="Bacterial extracellular solute-binding proteins,
                     family 5 Middle; Region: SBP_bac_5; pfam00496"
                     /db_xref="CDD:249905"
     gene            157276..157962
                     /gene="ypdP"
                     /locus_tag="CTDLC_0140"
                     /db_xref="GeneID:12387616"
     CDS             157276..157962
                     /gene="ypdP"
                     /locus_tag="CTDLC_0140"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane spanning protein"
                     /protein_id="YP_005812071.1"
                     /db_xref="GI:385244227"
                     /db_xref="GeneID:12387616"
                     /translation="MLNETLFVLQILVVIGFGAFFAARNLIMLAAWASLLSIIMNIFV
                     LKQIVLFGFEVTAADVYVIGLFSCLNCAREFWGKESTRKVIFVSWCSTLSFLILTQLH
                     LHLKPSPGDISQLHYEALFAPSLRIISASVITTMIVQFVDFKVFGWLKKHSQGRVFGL
                     RSACSVALSQSIDTVIFSFLGLYGLVANLPDVMMFSLLSKGTALLLASPCVALAKVFY
                     NRLNKEEAHF"
     misc_feature    157345..157938
                     /gene="ypdP"
                     /locus_tag="CTDLC_0140"
                     /note="conserved hypothetical integral membrane protein;
                     Region: TIGR00697"
                     /db_xref="CDD:129780"
     gene            158146..158592
                     /gene="secA_1"
                     /locus_tag="CTDLC_0141"
                     /db_xref="GeneID:12387617"
     CDS             158146..158592
                     /gene="secA_1"
                     /locus_tag="CTDLC_0141"
                     /codon_start=1
                     /transl_table=11
                     /product="Preprotein translocase subunit-like protein"
                     /protein_id="YP_005812072.1"
                     /db_xref="GI:385244228"
                     /db_xref="GeneID:12387617"
                     /translation="MLKKPNRNDPCPCGSGKKYKQCCLKSQALTARHTPEGKFKFSIT
                     ASPAAGASTEGFTKLFRQSVDSYTSEQKEGMSRFLITKNKEPIGKRAIRKAKAKEERI
                     ISEKLSQHEFQVMDTEVSGEDIQSSLDYEQFLPTEEDYRVQKEEDS"
     misc_feature    158149..158586
                     /gene="secA_1"
                     /locus_tag="CTDLC_0141"
                     /note="Predicted metal-binding protein related to the
                     C-terminal domain of SecA [General function prediction
                     only]; Region: COG3318"
                     /db_xref="CDD:225855"
     misc_feature    <158152..158214
                     /gene="secA_1"
                     /locus_tag="CTDLC_0141"
                     /note="SEC-C motif; Region: SEC-C; cl19389"
                     /db_xref="CDD:267742"
     gene            158661..158733
                     /locus_tag="CTDLC_r001"
                     /db_xref="GeneID:12387618"
     tRNA            158661..158733
                     /locus_tag="CTDLC_r001"
                     /product="tRNA-Thr"
                     /db_xref="GeneID:12387618"
     gene            158743..158825
                     /locus_tag="CTDLC_r002"
                     /db_xref="GeneID:12387619"
     tRNA            158743..158825
                     /locus_tag="CTDLC_r002"
                     /product="tRNA-Tyr"
                     /db_xref="GeneID:12387619"
     gene            158992..159849
                     /locus_tag="CTDLC_0142"
                     /db_xref="GeneID:12387620"
     CDS             158992..159849
                     /locus_tag="CTDLC_0142"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812073.1"
                     /db_xref="GI:385244229"
                     /db_xref="GeneID:12387620"
                     /translation="MSDSDKIINDCRFDFNTTIHGDLLASNLTTEGDVTVKSISAKES
                     FSVKRNVDVNENDIIVNGFTGAAGYDLTTQGKISINLNGNRLSNVKRPEKDSQPVPAN
                     YIRTPEYYFCSLQDGARIEWKRGQKLPLIGPSRLVYQSSRIDEFIRFVSFEEDKTKNQ
                     VKINLSGTTGLQMLAKGVYIINVGVGKRWGWNNGYGGDYCLAVPLGKEYSESSTFSRG
                     GYYASTAVGTAIHIRKESTNPDGPFSSSDTELMKTLLEVRYKGGDYVDKSALSTLYFG
                     VLVYPEIGG"
     gene            159851..160693
                     /locus_tag="CTDLC_0143"
                     /db_xref="GeneID:12387621"
     CDS             159851..160693
                     /locus_tag="CTDLC_0143"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812074.1"
                     /db_xref="GI:385244230"
                     /db_xref="GeneID:12387621"
                     /translation="MKKPVFTGGAPIPGISTEEGTGVKDQNLWMRNATLKVEGDATID
                     DTLTSRDLKVTGPTIHTDLDLSVGGDVKGGRTVLGETVLEGDFNIKCNQGQVPQFTNL
                     SDPLSARDAITFDYYRDRSTQAYNCATHRNGALVNGNRFIDLRLHNSEDSESYTPMYR
                     NRFYWKDNDQKKLYLKSPGIYQVAFQIFRSGGYHSGNDDPTIFLRLYTSAYEYTNLCT
                     GDTRGFNPGNTTNTSLYSIFSIPSIGNEHPFIQVFTKIHVNIAYSMINVIWFPFGSSY
                     KEAD"
     gene            160693..161550
                     /locus_tag="CTDLC_0144"
                     /db_xref="GeneID:12387622"
     CDS             160693..161550
                     /locus_tag="CTDLC_0144"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812075.1"
                     /db_xref="GI:385244231"
                     /db_xref="GeneID:12387622"
                     /translation="MTTPDNNTIDVSFPTFVRLNVATTDLADGNKSNAVTITETATAN
                     YVNVTQDLTSSTAKLECTQDLIAQGKLIVTNPKSDISFGGRVNLADNTVNYSNGGAEV
                     SFTNINSRQGKQYVPYGLYKNGEPKISMRSALSGGHVGSGDTGGWGAEVLWDAYTEQL
                     KDMTDGAVTLNSSNRGKLSFTASPEAPVLFRLSVFMRKNGDWLDNGVGGRVMLYVNTT
                     DSAGKTVRRLLGIAVCLGSTWYTTVPMFWCAATYYATSSGFFQLIVGERNFRVSSLSW
                     SVVRLPVVP"
     gene            161736..163580
                     /locus_tag="CTDLC_0145"
                     /db_xref="GeneID:12387623"
     CDS             161736..163580
                     /locus_tag="CTDLC_0145"
                     /EC_number="2.7.11.1"
                     /note="Serine/threonine protein kinase"
                     /codon_start=1
                     /transl_table=11
                     /product="NIRV family protein"
                     /protein_id="YP_005812076.1"
                     /db_xref="GI:385244232"
                     /db_xref="GeneID:12387623"
                     /translation="MEERAAVEYWGDYKVIAELGHGLWSRDVLAEHRFIKKRYILKIL
                     PSELSSSENFMRVFQEVIVQLAAIRHASLVAIENVSREGDRYFVVTEENGGTISLAQY
                     LSGRKLSEEEVVHLIQQLCDALELVHSIGLAHGQIHLHSVHVSFFNGIANIYLPEVGF
                     ASLLRERMFSTIMQSGSARESITRIRDLLMFEAPEEQEVFGREADVYSVGVLAYYLLV
                     GSFPWGSFPKPSLCMPDSWYDWDGFILSCLQQQREVRPKCLREALRRKTSGEQLQVTL
                     DSCREPLREMEIEDTPTELGPPSALIREGERLCEVKEEQHAFVLVEAKSIDEVMVTTV
                     DSEEELESSEGYANPLQSLLAREPVVSRYVEVEREEIKPQPLLTEMIFIEGGEFSRGS
                     GDGQRDELPVHNITLPGFFLDIHPVTNEQFVRFLECVGSEQDEHYNELIRLKDSRIQR
                     RSGRLIIEPGYAKHPVVGVTWYGASSYACWIGKRLPSEAEWEVAASGGKLGLRYPTGE
                     EIDKSKANFFSSDTTPVMSYPSSILGLYDMAGNVYEWCQDWYSYDFYESSALEPDAPL
                     GPPQGVYRVLRGGCWKSLKDDLRCAHRHRNNPGAINSTYGFRCAKDVK"
     misc_feature    161772..162527
                     /locus_tag="CTDLC_0145"
                     /note="Serine/Threonine protein kinases, catalytic domain;
                     Region: S_TKc; smart00220"
                     /db_xref="CDD:214567"
     misc_feature    161790..162509
                     /locus_tag="CTDLC_0145"
                     /note="Catalytic domain of Protein Kinases; Region: PKc;
                     cd00180"
                     /db_xref="CDD:173623"
     misc_feature    order(161790..161804,161814..161816,161853..161855,
                     161859..161861,161955..161957,162003..162011,
                     162027..162029,162033..162035,162141..162143,
                     162147..162149,162153..162158,162162..162164,
                     162204..162206,162213..162215,162255..162260,
                     162300..162305)
                     /locus_tag="CTDLC_0145"
                     /note="active site"
                     /db_xref="CDD:173623"
     misc_feature    order(161790..161804,161814..161816,161853..161855,
                     161859..161861,161955..161957,162003..162011,
                     162027..162029,162141..162143,162147..162149,
                     162153..162158,162162..162164,162204..162206)
                     /locus_tag="CTDLC_0145"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:173623"
     misc_feature    order(161802..161804,162027..162029,162033..162035,
                     162141..162143,162147..162149,162153..162155,
                     162213..162215,162255..162260,162300..162305)
                     /locus_tag="CTDLC_0145"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:173623"
     misc_feature    order(162201..162221,162255..162260,162300..162305)
                     /locus_tag="CTDLC_0145"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:173623"
     misc_feature    162840..163577
                     /locus_tag="CTDLC_0145"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG1262"
                     /db_xref="CDD:224182"
     misc_feature    162864..163568
                     /locus_tag="CTDLC_0145"
                     /note="Sulfatase-modifying factor enzyme 1; Region:
                     FGE-sulfatase; pfam03781"
                     /db_xref="CDD:252159"
     gene            163591..165582
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /db_xref="GeneID:12387624"
     CDS             163591..165582
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /EC_number="6.5.1.2"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase"
                     /protein_id="YP_005812077.1"
                     /db_xref="GI:385244233"
                     /db_xref="GeneID:12387624"
                     /translation="MGAVSRDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQ
                     EIEVQHPEWKVSWSPTMYLGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKL
                     LGYSPGYSLELKIDGIAVAIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQ
                     EAPEDLEVRGEVFLSYEAFEELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKL
                     DLSVYGLITDQKKRSHFENLQLCSQWGFFVAGMPKQCRSRQDVVERIREIEEMRAALP
                     MAIDGVVIKVDNIAYQDRLGLTSKHYRWAIAYKYAPERAETILEDIVVQVGKTGILTP
                     VAELAPVFLSGSRVSRASLYNQDEIEKKDIRIGDSVYVEKGGEVIPKIVGINLAKRSL
                     ESEPWKMPSLCPVCHEPVVKEKVSVRCVNPLCSGGMLEKICFFASKSALNIDHLGEKV
                     VTKLFEVGLISSCSDIFALAEEDLKQVPGFKDRSIQNLLASIAGAKKVALDRLLTALS
                     IPFVGSSGAIALADHFGTLDKVIEASLDELMSIEGIGPKVAASIVAFFSKHENREEIR
                     RMQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQMTRTQAEERIRCLGGKVSSSVSKST
                     YAVIAGSEAGGKLKKAQDLGLSIWNESELLRILDAKSVS"
     misc_feature    163615..164526
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="NAD+ dependent DNA ligase adenylation domain. DNA
                     ligases catalyze the crucial step of joining the breaks in
                     duplex DNA during DNA replication, repair and
                     recombination, utilizing either ATP or NAD(+) as a
                     cofactor, but using the same basic reaction...; Region:
                     LIGANc; cd00114"
                     /db_xref="CDD:238062"
     misc_feature    163624..165549
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="DNA ligase, NAD-dependent; Region: dnlj; TIGR00575"
                     /db_xref="CDD:233030"
     misc_feature    order(163837..163839,163924..163926,163930..163932,
                     163993..163995,164101..164103,164257..164259,
                     164437..164439,164443..164445)
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="nucleotide binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:238062"
     misc_feature    order(163930..163932,163936..163941)
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="K-X-D-G motif; other site"
                     /db_xref="CDD:238062"
     misc_feature    163930..163932
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238062"
     misc_feature    164533..164778
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="NAD-dependent DNA ligase OB-fold domain; Region:
                     DNA_ligase_OB; pfam03120"
                     /db_xref="CDD:145978"
     misc_feature    164797..164865
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="NAD-dependent DNA ligase C4 zinc finger domain;
                     Region: DNA_ligase_ZBD; pfam03119"
                     /db_xref="CDD:251739"
     misc_feature    164893..165066
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="Helix-hairpin-helix domain; Region: HHH_5;
                     pfam14520"
                     /db_xref="CDD:258660"
     misc_feature    165094..165285
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="Helix-hairpin-helix motif; Region: HHH_2;
                     pfam12826"
                     /db_xref="CDD:257328"
     misc_feature    165352..165564
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="Breast Cancer Suppressor Protein (BRCA1),
                     carboxy-terminal domain. The BRCT domain is found within
                     many DNA damage repair and cell cycle checkpoint proteins.
                     The unique diversity of this domain superfamily allows
                     BRCT modules to interact forming homo...; Region: BRCT;
                     cd00027"
                     /db_xref="CDD:237994"
     misc_feature    order(165397..165399,165409..165411,165418..165420,
                     165430..165432)
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="Dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:237994"
     misc_feature    order(165544..165546,165556..165558)
                     /gene="ligA"
                     /locus_tag="CTDLC_0146"
                     /note="BRCT sequence motif; other site"
                     /db_xref="CDD:237994"
     gene            165680..170029
                     /locus_tag="CTDLC_0147"
                     /db_xref="GeneID:12387625"
     CDS             165680..170029
                     /locus_tag="CTDLC_0147"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane spanning protein"
                     /protein_id="YP_005812078.1"
                     /db_xref="GI:385244234"
                     /db_xref="GeneID:12387625"
                     /translation="MANPSTPSFNHSDLSLQGRLRASSQQCTQAGQGDPQPLSPESRG
                     LTSNFSTRRDLIDVVEESIETAKGSELKKLRIYEIALKILTIIGAAILFAVPLCMLLG
                     VPLWIPIVTCIGVGIAFSIAKGCLQKRCQQIREEYRALHLYHRYLLSNKDSIDGTLLS
                     RFDIRFRKAEEKLHGLDLDKREANHPLEADKRYDFAGLAHQRYQVDAALGISSSQDAF
                     WRGVAQQVKSVKDDVVLGDKASTDLYPIAQQALQAAGVGFSGAAGKESLLDLAKSLSS
                     LFAWGSQVGKDSHEALQQYQMRFLSSPILATWCGAGFSASAQDFVLKGENILDIASEN
                     HTKMQNAIKRVQLVSVLGKMRNWKEKIDTLIQNKNLDQDSLRKLYQDIEKAMHKVCIE
                     DGVSTSIQTQVRKVTQKYLRQDLQELLNKKAPLNESDLSKMQKGISSCANLVVTLLES
                     QLGTSGQTPIKEVEESIYRDLIATILQMGSAAGGVTPLVDGVHKAIREGKALRSELSR
                     AMSLHPRQSFLGVQSAVEKLQAFIRDPKWGASAVHTSAEETLAQKQKFVSDLTRIQTS
                     LADWRERYGLFEETKLNHIVSTDFVSRTEAFLDTLKNVAEACSLEQAVAELKDCEDAM
                     KADLTHVEQKMNPTEIESAREEFKRLMEELAGIQEQLEQIAQPIYEEGVSGERLLLNT
                     VFFHPEVLRKKVQAKEASLEALTKGEQPSPTKKKTLKQLSEGCEYFSSLVSKINALKT
                     ILEGSRGKKIASQDIRQLIGLTDELALELSSFQQDSLESLLYGLEGLSIPAASIEQKK
                     GSPKSSSIAEKVVYASHQRVHNGVKAKVNRTLEAFSQLIKGLRGSLRNAMITKAVVAA
                     VLSVAFSCLAIALFSVQLTWLPIMLCVLALVLEAIPSALSIWVEKRNWKYEVASLAKQ
                     LVSDGRKLPYPDLGDQNIKHLEKIRDVYGLDGVAELRVAEAALLGVQKLPEEQKQESL
                     KSAVKALRADAKVLNKKFKKLPESYQPQHSEVTGVQGVTEQESRDDVLVAQDMAAIEE
                     LQDQYHAACLQFESVSTRFLAEQRKAKFLEELLVQKRRDVSHLSHQEAHYTQVVSHLK
                     ELISMRKGASTQHASKEEISTKMRELLSLDDQLLKAHTAQDVNRDNSINGQLQQQFKK
                     LSEEGSLQKVKALLELNMCLGNAGQTLYHSRLKREVFEASLSGTSRQLLQYGEDLFAS
                     YDGSDRSALLRFVLGSGYEMISEASSELKSLRKRWKRSASQAAIAPEDYEKVCRVLER
                     FLKARDSLRPKLGLPLGKSSDATVGLQHQIRDNQRVKARVTACYQESCRNVLQHLEDW
                     VRKTRQESAECQKVETKIREFCQKAGSKENLAESTEMLFSSLEEDLNKIPLDVLRAIL
                     RSLSSKVLHIRDQKLELEKLEEQFAKTNAIVKAKEAEFEKNGEVWHNQYQMLKSQMEK
                     LESQKRRLTDKKE"
     misc_feature    <168467..>170026
                     /locus_tag="CTDLC_0147"
                     /note="ATPase involved in DNA repair [DNA replication,
                     recombination, and repair]; Region: SbcC; COG0419"
                     /db_xref="CDD:223496"
     gene            complement(170092..171633)
                     /gene="mhpA"
                     /locus_tag="CTDLC_0148"
                     /db_xref="GeneID:12387626"
     CDS             complement(170092..171633)
                     /gene="mhpA"
                     /locus_tag="CTDLC_0148"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="YP_005812079.1"
                     /db_xref="GI:385244235"
                     /db_xref="GeneID:12387626"
                     /translation="MLVRITMIDVLIMGANPSGLILASILQQHRARIKVIDSRDSITA
                     SLPLPLHSLPVVLSSSSLELLDNINLLGDLLDKGRKIFGARYHWKQRTVLFKFNQSSA
                     SRCPFSLLISYNELVTHLLEEFERLGGVVNWATRPVTQVEQNLFIESTKSSSQVYEGR
                     EIFTPKWIIACEMDADPDLKDLLKTQIKTKKIYKEALFVDCEEGEPFEESHIHLLPVT
                     KSFVNFVFYNPYRGSRQLYLANTSGPLSSKFKNKLLYTYGLALAEDPLSISSSLLQYP
                     FCHDRYIFLGSIANNLSFSYLSGVNSNIHDAFNLGWKLLPVIKKAASSQLILSKELKT
                     SHVLPHFNEVHQKRATKLLFSNMYTPALMYYYLKGCKQLDAAEGELYYPSHRASKYEA
                     SDIIKVSPNDKEIQGPRPGSRALDIRLDTGNYLLDSLKNAKHLLVFFKERPDLVHALL
                     EEYGEWVDVIVTEDPKVHKLYHANPESLFIIRPDRYIGYRTHTFKLHELISYLLRIFA
                     AENAN"
     misc_feature    complement(170647..171609)
                     /gene="mhpA"
                     /locus_tag="CTDLC_0148"
                     /note="NAD(P)-binding Rossmann-like domain; Region:
                     NAD_binding_8; cl19134"
                     /db_xref="CDD:267487"
     gene            complement(171815..172762)
                     /locus_tag="CTDLC_0149"
                     /db_xref="GeneID:12387627"
     CDS             complement(171815..172762)
                     /locus_tag="CTDLC_0149"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase family protein"
                     /protein_id="YP_005812080.1"
                     /db_xref="GI:385244236"
                     /db_xref="GeneID:12387627"
                     /translation="MKKFATFLCVLLSGSGFAAPVEVPGFPSIPETYITINDKELGLQ
                     EHCRGVNVLSCGYNLVGMFHTPTTPMPLGGYPTVIFFHGFRGNCTGKDGVYRDLARLL
                     TANGIAVARFDMAGCGNSEGICDQIPARTYLRNGEDILATVAKYPEVNPHRIGIAGIS
                     LGCHTTIHLASTYRPRDYTVQAISVWAPIADGVILLKEICATIGLTMTQFSDMGEVGK
                     AFGFKQLPLKLCRDDIDFFLGIQDHILLLSLPRRIPVLHQQGLEDHVVSTAHQRLFLG
                     AAPAQMLSKSYPETPHEIASSPYRQEVLQEILTHFQSNL"
     misc_feature    complement(171818..172687)
                     /locus_tag="CTDLC_0149"
                     /note="Hydrolases of the alpha/beta superfamily [General
                     function prediction only]; Region: COG1073"
                     /db_xref="CDD:223999"
     misc_feature    complement(172325..172597)
                     /locus_tag="CTDLC_0149"
                     /note="Putative lysophospholipase; Region: Hydrolase_4;
                     cl19140"
                     /db_xref="CDD:267493"
     gene            173161..173319
                     /gene="rpmG"
                     /locus_tag="CTDLC_0150"
                     /db_xref="GeneID:12387628"
     CDS             173161..173319
                     /gene="rpmG"
                     /locus_tag="CTDLC_0150"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="YP_005812081.1"
                     /db_xref="GI:385244237"
                     /db_xref="GeneID:12387628"
                     /translation="MASKNREIIKLKSTESSEMYWTVKNKRKTSGRLELKKYDRKLRK
                     HVIFKEAK"
     misc_feature    173161..173316
                     /gene="rpmG"
                     /locus_tag="CTDLC_0150"
                     /note="50S ribosomal protein L33; Validated; Region: rpmG;
                     PRK00595"
                     /db_xref="CDD:179075"
     gene            173355..174866
                     /locus_tag="CTDLC_0151"
                     /db_xref="GeneID:12387629"
     CDS             173355..174866
                     /locus_tag="CTDLC_0151"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein release inner membrane protein"
                     /protein_id="YP_005812082.1"
                     /db_xref="GI:385244238"
                     /db_xref="GeneID:12387629"
                     /translation="MKLELLLAFKYLIPKRKRLSSSIVSAFSMGIVALVVWLSVVFMS
                     VIHGLQQRWVGDLASLHSSIRIEPSDKYYESYYYQIDSHAEASQYIYKTIGEKLLCEQ
                     TDPYDPDVDFLLPEAFPDPEFSDNGEMIDPVRTANERMLSLFSSRKGSFVEFEEGMGH
                     VHMDRAFRGHKGEPRALSQYIAYSSDILYQQRMLPFEETDYSTEVLNRFNASSEGWLA
                     DFLVLQEKFRGMSVILPVVYRDQGYRVGDTASLSVFSVKKEGEVRFPLRVIGFYNPGV
                     SPFGGKTIFIDKELAASIRSESEGLGMHNGWQVFLPSVQDIPVMKQSIQKIFKESEVS
                     SYWEISSLYDYEFFKPILDQLQSDQVLFSIVSFIVLIVACSNIVTMSILLVNNKKKEI
                     GILKAMGVSSSRLQLVFGLCGACSGLVGALLGSILAALTLKNLGILTHWLSKLQGREA
                     FNPSFFGEQLPQDFHLPTVICLSLGALVLAAISGAIPAQHVARMQVSDILKSE"
     misc_feature    173433..174863
                     /locus_tag="CTDLC_0151"
                     /note="ABC-type antimicrobial peptide transport system,
                     permease component [Defense mechanisms]; Region: SalY;
                     COG0577"
                     /db_xref="CDD:223650"
     misc_feature    174441..174842
                     /locus_tag="CTDLC_0151"
                     /note="FtsX-like permease family; Region: FtsX; pfam02687"
                     /db_xref="CDD:251477"
     gene            174873..175550
                     /gene="ycfV"
                     /locus_tag="CTDLC_0152"
                     /db_xref="GeneID:12387630"
     CDS             174873..175550
                     /gene="ycfV"
                     /locus_tag="CTDLC_0152"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein release ATP-binding protein"
                     /protein_id="YP_005812083.1"
                     /db_xref="GI:385244239"
                     /db_xref="GeneID:12387630"
                     /translation="MVILVEAKHISKVIQQQDVCIPILKDVSFQLHAGEVVAITGASG
                     SGKSSLLHLLGTLDQPSSGQILFFGKQVRREELPIFRNCRIGFIFQNFYLLEDDSVIN
                     NVLMPAQIARKDTGQKSKARERALALLESVGLVDRRDEKGSLLSGGEKQRVAIARALM
                     NDPEIVLADEPSGNLDHRTADTIHELLLALAEKHRGVLIVTHDRELAEKCHREEILRD
                     GTLMQRQ"
     misc_feature    174882..175529
                     /gene="ycfV"
                     /locus_tag="CTDLC_0152"
                     /note="ABC-type antimicrobial peptide transport system,
                     ATPase component [Defense mechanisms]; Region: SalX;
                     COG1136"
                     /db_xref="CDD:224059"
     misc_feature    174885..175535
                     /gene="ycfV"
                     /locus_tag="CTDLC_0152"
                     /note="ATP-binding cassette domain of the transporters
                     involved in export of lipoprotein and macrolide, and cell
                     division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255"
                     /db_xref="CDD:213222"
     misc_feature    174993..175016
                     /gene="ycfV"
                     /locus_tag="CTDLC_0152"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213222"
     misc_feature    order(175002..175007,175011..175019,175140..175142,
                     175377..175382,175476..175478)
                     /gene="ycfV"
                     /locus_tag="CTDLC_0152"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213222"
     misc_feature    175131..175142
                     /gene="ycfV"
                     /locus_tag="CTDLC_0152"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213222"
     misc_feature    175305..175334
                     /gene="ycfV"
                     /locus_tag="CTDLC_0152"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213222"
     misc_feature    175365..175382
                     /gene="ycfV"
                     /locus_tag="CTDLC_0152"
                     /note="Walker B; other site"
                     /db_xref="CDD:213222"
     misc_feature    175389..175400
                     /gene="ycfV"
                     /locus_tag="CTDLC_0152"
                     /note="D-loop; other site"
                     /db_xref="CDD:213222"
     misc_feature    175464..175484
                     /gene="ycfV"
                     /locus_tag="CTDLC_0152"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213222"
     gene            complement(175701..178202)
                     /locus_tag="CTDLC_0153"
                     /db_xref="GeneID:12387631"
     CDS             complement(175701..178202)
                     /locus_tag="CTDLC_0153"
                     /codon_start=1
                     /transl_table=11
                     /product="MAC/perforin family protein"
                     /protein_id="YP_005812084.1"
                     /db_xref="GI:385244240"
                     /db_xref="GeneID:12387631"
                     /translation="MLFFKASSFHYRVSITVQPGEFLMTKPSFLYVIQPFSVFNPRLG
                     RFSTDSDTYIEEENRLASFIESLPLEIFDIPSFMETAISNSPYILSWETTKDGALFTI
                     LEPKLSACAATCLVAPSIQMKSDAELLEEIKQALLRSSHDGVKYRITRESFSPEKKTP
                     KVALVDDDIELIRNVDFLGRAVDIVKLDPINILNTVSEENILDYSFTRETAQLSADGR
                     FGIPPGTKLFPKPSFDVEISTSIFEETTSFTRSFSASVTFSVPDLAATMPLQSPPMVE
                     NGQKEICVIQKHLFPSYSPKLVDIVKRYKREAKILINKLAFGMLWRHRAKSQILTEGS
                     VRLDLQGFTESKYNYQIQVGSHTIAAVLIDMDISKIQSKSEQAYAIRKIKSGFQRSLD
                     DYHIYQIERKQTFSFSPKHRSLSSTSHSEDSDLDLSEAAAFSGSLTCEFVKKSTQHAK
                     NTVTCSTAAHSLYTLKEDDSSNPSEKRLDSCFRNWIENKLSANSPDSWSAFIQKFGTH
                     YIASATFGGIGFQVLKLSFEQVEDLHSKKISLETAAANSLLKGSVSSSTESGYSSYSS
                     TSSSHTVFLGGTVLPSVHDERLDFKDWSESVHLEPVPIQVSLQPITNLLVPLHFPNIG
                     AAELSNKRESLQQAIRVYLKEHKVDEQGERTTFTSGIDNPSSWFTLEAAHSPLIVSTP
                     YIASWSTLPYLFPTLRERSSATPIVFYFCVDNNEHASQKILNQSYCFLGSLPIRQKIF
                     GSEFASFPYLSFYGNAKEAYFDNTYYPTRCGWIVEKLNTTQDQFLRDGDEVRLKHVSS
                     GKYLATTPLKDTHGTLTRTTNCEDAIFIIKKSSGY"
     misc_feature    complement(176271..176852)
                     /locus_tag="CTDLC_0153"
                     /note="membrane-attack complex / perforin; Region: MACPF;
                     smart00457"
                     /db_xref="CDD:214671"
     misc_feature    complement(<175776..175859)
                     /locus_tag="CTDLC_0153"
                     /note="Domain in ryanodine and inositol trisphosphate
                     receptors and protein O-mannosyltransferases; Region: MIR;
                     smart00472"
                     /db_xref="CDD:197746"
     gene            complement(178319..179470)
                     /locus_tag="CTDLC_0154"
                     /db_xref="GeneID:12387632"
     CDS             complement(178319..179470)
                     /locus_tag="CTDLC_0154"
                     /codon_start=1
                     /transl_table=11
                     /product="Phosphatidylcholine-hydrolyzing phospholipase D
                     (PLD) family"
                     /protein_id="YP_005812085.1"
                     /db_xref="GI:385244241"
                     /db_xref="GeneID:12387632"
                     /translation="MLPHQQNSSSERARHHESRSHRHSSSSRHHVTRSQSSALPQLQE
                     RPVPHPLAERELIIFHSVHQQQNNNPLRMICDTIRQAQRGIFMRIYTISSDDIIQSLI
                     QTSHHVPVEVKYHCGESLPVACQNSRVVLRLTNGRTLQHKKTMLADFQTVVTGSANYT
                     DLSLNHDANVTACIESSELHDAVFSERPQLVHVGPQLLNYIPIQRLIPNAASKMILNA
                     INQATDSIFVLMYIFLSPEFFLALAQAMRRGVRVKVIIDNHSKQDTCKLLSKLGIQLP
                     IYERKTEGVLHTKICCIDNKTLIFGSANWSGAGMIKNFEDLFILRPITETQLQAFMDV
                     WSLLETNSSYLSPESVLTAPTPSSRPTQQDTDSDDEQPSTSQQDIRMRK"
     misc_feature    complement(<178988..179272)
                     /locus_tag="CTDLC_0154"
                     /note="Catalytic domain of phospholipase D superfamily
                     proteins; Region: PLDc_SF; cl15239"
                     /db_xref="CDD:265651"
     misc_feature    complement(178922..179251)
                     /locus_tag="CTDLC_0154"
                     /note="PLD-like domain; Region: PLDc_2; pfam13091"
                     /db_xref="CDD:257494"
     misc_feature    complement(order(178997..178999,179003..179005,
                     179042..179044,179048..179050))
                     /locus_tag="CTDLC_0154"
                     /note="putative active site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(179048..179050)
                     /locus_tag="CTDLC_0154"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(178457..178867)
                     /locus_tag="CTDLC_0154"
                     /note="Catalytic domain of EDTA-resistant nuclease Nuc,
                     vertebrate phospholipase D6, and similar proteins; Region:
                     PLDc_Nuc_like; cd09116"
                     /db_xref="CDD:197215"
     misc_feature    complement(178466..178828)
                     /locus_tag="CTDLC_0154"
                     /note="PLD-like domain; Region: PLDc_2; pfam13091"
                     /db_xref="CDD:257494"
     misc_feature    complement(order(178526..178528,178559..178561,
                     178565..178567,178604..178606,178610..178612))
                     /locus_tag="CTDLC_0154"
                     /note="putative active site [active]"
                     /db_xref="CDD:197215"
     misc_feature    complement(178610..178612)
                     /locus_tag="CTDLC_0154"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197215"
     gene            complement(179439..180380)
                     /locus_tag="CTDLC_0155"
                     /db_xref="GeneID:12387633"
     CDS             complement(179439..180380)
                     /locus_tag="CTDLC_0155"
                     /codon_start=1
                     /transl_table=11
                     /product="Phosphatidylcholine-hydrolyzing phospholipase D
                     (PLD) family"
                     /protein_id="YP_005812086.1"
                     /db_xref="GI:385244242"
                     /db_xref="GeneID:12387633"
                     /translation="MLAGSKRKHKTPEDTSSSSSKRARSSSSQVVPRLLQHHELIQLY
                     SAHQQRNNEPVKMICETILQAKRSVLLKIFNIGSPRILAALAEASNRAPVSVHYQMGP
                     FSKHCTEGNVQFRPRRGCSLLHRKTLLIDNNIVVTGTANYTEASLEKDVNLTAKIFSE
                     HLYRWAFRHDRGEVRVGSQQVSYYSLSQIRRDLCVKAILEANGIVLRERTCEGILHTK
                     VCCIDSSTLIIGSVNWSRGGLTLNLEEFLIINPLTETQLECYNELWAHIETNSRLMTK
                     ELIQLHEKRKKSITDPKQISSSTQDEENASTSAEQQF"
     misc_feature    complement(179925..180215)
                     /locus_tag="CTDLC_0155"
                     /note="Catalytic domain of phospholipase D superfamily
                     proteins; Region: PLDc_SF; cl15239"
                     /db_xref="CDD:265651"
     misc_feature    complement(179883..180209)
                     /locus_tag="CTDLC_0155"
                     /note="PLD-like domain; Region: PLDc_2; pfam13091"
                     /db_xref="CDD:257494"
     misc_feature    complement(order(179925..179927,179958..179960,
                     179964..179966,180003..180005,180009..180011))
                     /locus_tag="CTDLC_0155"
                     /note="putative active site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(180009..180011)
                     /locus_tag="CTDLC_0155"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(179580..>179876)
                     /locus_tag="CTDLC_0155"
                     /note="Catalytic domain of phospholipase D superfamily
                     proteins; Region: PLDc_SF; cl15239"
                     /db_xref="CDD:265651"
     misc_feature    complement(179589..>179876)
                     /locus_tag="CTDLC_0155"
                     /note="PLD-like domain; Region: PLDc_2; pfam13091"
                     /db_xref="CDD:257494"
     misc_feature    complement(order(179649..179651,179682..179684,
                     179688..179690,179727..179729,179733..179735))
                     /locus_tag="CTDLC_0155"
                     /note="putative active site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(179733..179735)
                     /locus_tag="CTDLC_0155"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197200"
     gene            complement(180737..181951)
                     /locus_tag="CTDLC_0157"
                     /db_xref="GeneID:12387634"
     CDS             complement(180737..181951)
                     /locus_tag="CTDLC_0157"
                     /codon_start=1
                     /transl_table=11
                     /product="Phosphatidylcholine-hydrolyzing phospholipase D
                     (PLD) family"
                     /protein_id="YP_005812087.1"
                     /db_xref="GI:385244243"
                     /db_xref="GeneID:12387634"
                     /translation="MSVQGSSSLKYSDLFKPPEPTSSTDSSKEPPKESAWKVVSHSRG
                     RRRARSNPSPHTSQNTPSPKDSSLVARTDKAATDIFNSAKHKAIETTKRSDQQSRSLH
                     ILHLLAENPEPIVFHSAHQTNHNDPQRMLCDAILQANRIITMRIFNIGSPEIIRALIR
                     AVRRNIPVVVSAWNFPNLSNWDRESELCVELRGNPQICLHKKTTLIDNQLTIIGTANY
                     TKSSFFKDINLTALIQNPALYSLILSDTRGSVSIGSQTISYYPLPFPQSNTKILPIIQ
                     EIQKAQRTIKIAMNIFSHTEIFLALEQARLRGVTITIVINKKESAHTLDILHRISALL
                     LLKSVTTVDSLHAKICLIDNQTLIFGSPNWTYHGMHKNLEDLLIVTPLTPKQIHSIQE
                     IWAFLLKNSSPV"
     misc_feature    complement(181226..181567)
                     /locus_tag="CTDLC_0157"
                     /note="Catalytic domain of phospholipase D superfamily
                     proteins; Region: PLDc_SF; cl15239"
                     /db_xref="CDD:265651"
     misc_feature    complement(181235..181561)
                     /locus_tag="CTDLC_0157"
                     /note="PLD-like domain; Region: PLDc_2; pfam13091"
                     /db_xref="CDD:257494"
     misc_feature    complement(order(181268..181270,181301..181303,
                     181307..181309,181346..181348,181352..181354))
                     /locus_tag="CTDLC_0157"
                     /note="putative active site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(181352..181354)
                     /locus_tag="CTDLC_0157"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(180761..181174)
                     /locus_tag="CTDLC_0157"
                     /note="Catalytic domain of EDTA-resistant nuclease Nuc,
                     vertebrate phospholipase D6, and similar proteins; Region:
                     PLDc_Nuc_like; cd09116"
                     /db_xref="CDD:197215"
     misc_feature    complement(180770..181132)
                     /locus_tag="CTDLC_0157"
                     /note="PLD-like domain; Region: PLDc_2; pfam13091"
                     /db_xref="CDD:257494"
     misc_feature    complement(order(180830..180832,180863..180865,
                     180869..180871,180908..180910,180914..180916))
                     /locus_tag="CTDLC_0157"
                     /note="putative active site [active]"
                     /db_xref="CDD:197215"
     misc_feature    complement(180914..180916)
                     /locus_tag="CTDLC_0157"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197215"
     gene            complement(182075..182791)
                     /locus_tag="CTDLC_0158"
                     /db_xref="GeneID:12387635"
     CDS             complement(182075..182791)
                     /locus_tag="CTDLC_0158"
                     /codon_start=1
                     /transl_table=11
                     /product="Phosphatidylcholine-hydrolyzing phospholipase D
                     (PLD) family"
                     /protein_id="YP_005812088.1"
                     /db_xref="GI:385244244"
                     /db_xref="GeneID:12387635"
                     /translation="MQLQKFKATNQARLHCKNIVVDGSLVITGSANFSDAAFSRDTNL
                     VAIIRNPSLGQLVVSQQSGWITGGSQQIEYCSLYCHNHQGVDKVVKAVQSAVKTIRVA
                     MLVLSHKEVLHALHQAAQRGVEVTVLVNPHNKAIPFYALQDLNSKVKLRDVVVEENAL
                     LHCKVGLIDTNLLITGSANWTVRGLQYNIEDLIFIHQPTPSQLSAFFNLWEQAMSLSR
                     EVTAKKIKKSARAQHKYDDE"
     misc_feature    complement(182639..>182767)
                     /locus_tag="CTDLC_0158"
                     /note="Catalytic domain of phospholipase D superfamily
                     proteins; Region: PLDc_SF; cl15239"
                     /db_xref="CDD:265651"
     misc_feature    complement(182633..>182755)
                     /locus_tag="CTDLC_0158"
                     /note="PLD-like domain; Region: PLDc_2; pfam13091"
                     /db_xref="CDD:257494"
     misc_feature    complement(order(182663..182665,182696..182698,
                     182702..182704,182741..182743,182747..182749))
                     /locus_tag="CTDLC_0158"
                     /note="putative active site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(182747..182749)
                     /locus_tag="CTDLC_0158"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(182150..182569)
                     /locus_tag="CTDLC_0158"
                     /note="Catalytic domain of EDTA-resistant nuclease Nuc,
                     vertebrate phospholipase D6, and similar proteins; Region:
                     PLDc_Nuc_like; cd09116"
                     /db_xref="CDD:197215"
     misc_feature    complement(182162..182530)
                     /locus_tag="CTDLC_0158"
                     /note="PLD-like domain; Region: PLDc_2; pfam13091"
                     /db_xref="CDD:257494"
     misc_feature    complement(order(182222..182224,182255..182257,
                     182261..182263,182300..182302,182306..182308))
                     /locus_tag="CTDLC_0158"
                     /note="putative active site [active]"
                     /db_xref="CDD:197215"
     misc_feature    complement(182306..182308)
                     /locus_tag="CTDLC_0158"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197215"
     gene            complement(182734..183666)
                     /locus_tag="CTDLC_0159"
                     /db_xref="GeneID:12387636"
     CDS             complement(182734..183666)
                     /locus_tag="CTDLC_0159"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812089.1"
                     /db_xref="GI:385244245"
                     /db_xref="GeneID:12387636"
                     /translation="MCFLLFKNKSTFSLKRLDVEKKASFFSMSVNRNHNNFPPYGENE
                     TPPPESQPTDGPEDPSMQGAYYIAPEDLPQHQLAAAVEGLHIGSTLNPTAPEFTSGAV
                     SHHFETFTSSFPPAPQQPWAVLDPYATYPYGVQSLYLEYAPPAVVQEPYTTTGQQGLS
                     SYPEAAPQPPALQQPESLPQATARDRGDLEKEANNTNSFATQAIETTPSNISPCFNLH
                     GEAIQLFSTESGPSPLRSILQAIKQAKYHIYIQIYRFTSEEIAAALLERANNGVRIHY
                     NINTSTAQKPLFDILTCNCRNSKLLTRRDYTVKI"
     misc_feature    complement(<182845..182994)
                     /locus_tag="CTDLC_0159"
                     /note="Catalytic domain of phospholipase D superfamily
                     proteins; Region: PLDc_SF; cl15239"
                     /db_xref="CDD:265651"
     gene            complement(183812..184315)
                     /locus_tag="CTDLC_0160"
                     /db_xref="GeneID:12387637"
     CDS             complement(183812..184315)
                     /locus_tag="CTDLC_0160"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812090.1"
                     /db_xref="GI:385244246"
                     /db_xref="GeneID:12387637"
                     /translation="MTEQPHRLSEEARSIANEAKERLLKLNDKPELSRPYLVKGFLSK
                     ISRGISSKEAVSKFSTAIVTSLLGYLWNHILQNKERILSADARDLEARSVLLDTKEIL
                     ALCKYFAINRCTWLSSSSTQEEENLICQDIAKEMFSISLHALVEQQWIREYDLSVNNG
                     SSYKLFF"
     gene            complement(184312..185052)
                     /locus_tag="CTDLC_0161"
                     /db_xref="GeneID:12387638"
     CDS             complement(184312..185052)
                     /locus_tag="CTDLC_0161"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812091.1"
                     /db_xref="GI:385244247"
                     /db_xref="GeneID:12387638"
                     /translation="MARKPLVDRDHFPKYRTICDTIMEGNLENIRFSDKTGESVYSSK
                     ELPSVLFKRIGQKNAKQRVLNNIAVNACLAKIGVDGLQVLSASTYKDFLIEDKPFGKG
                     ALDTLIAYRLNPSLFDRAVKSLCKLFSFYHCPDLFVKSSDLLKDSPHSKLLLGFKENN
                     ESLAAESATLQPILYLTGIQCILEEPTPDLEAKLSSLFPYHKTLIQQELSKLRVSKPK
                     VEASKEPTPPSTYDERLNSSPYRNGKFL"
     gene            complement(185200..185439)
                     /locus_tag="CTDLC_0162"
                     /db_xref="GeneID:12387639"
     CDS             complement(185200..185439)
                     /locus_tag="CTDLC_0162"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812092.1"
                     /db_xref="GI:385244248"
                     /db_xref="GeneID:12387639"
                     /translation="MIVTFDKYLAPELGPDPLERLGNVLLYPIVRGFGSLVSVKTLGE
                     KRFLCFSDKVVSLCKRILCVVCNILAAPITCLLAL"
     gene            185672..187318
                     /locus_tag="CTDLC_0163"
                     /db_xref="GeneID:12387640"
     CDS             185672..187318
                     /locus_tag="CTDLC_0163"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812093.1"
                     /db_xref="GI:385244249"
                     /db_xref="GeneID:12387640"
                     /translation="MFVSFDKSRCRADVPDFFERTGNFLLHCVARGINVLYRVKQISN
                     YPSCYFSHKEISCCRRIANIVICILTGPLMLLATVLGLLAYRFSSTYQTSLQERFRYK
                     YEQKQALDEYRDREEKVITLQKFCRGFLVRNHLLNQETLTTCKQWGQKLLEGEKFPRV
                     PEGRSLVYISKQFPSLVAKHVGAQDARSRWHHIFSMRKALAYLDIKRIRAPRARVYQN
                     FIFEEKLPVSRISVDSMCLYKENPQAFDEAIKELLFLFKEVHFRDFVVETESPTDDFP
                     LAVKVHNYWVCPRYDNLPLFIQEGKDGSPEGRIGLVDLETFSWSPHPYPVEELAVMFP
                     MHKELLMTEAKKLQIPFSTKEVERSVEKGLAFFEHMLGHQDFCSQKSVTPLRNCAPYI
                     HLEVWRFSLKIFDILKAAIQLNGALNVLLSPDIRERLSAISDKQWLAISSQVTSSLLE
                     QVSTNIYQSHTEEAKRVNSSGTFIMCRSPIFRKSIFIKNLPQFLNKKLQLLPEEKAIS
                     EALASLCLRAVMEELVATGNIYSYDSMDDFFEGQYCRIRY"
     gene            187371..187631
                     /locus_tag="CTDLC_0164"
                     /db_xref="GeneID:12387641"
     CDS             187371..187631
                     /locus_tag="CTDLC_0164"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812094.1"
                     /db_xref="GI:385244250"
                     /db_xref="GeneID:12387641"
                     /translation="MTISSTTTPSKSSSCFQFRETNKEPVKTYRVTSIALVAIGLLLL
                     MISSLLLLLRVPMTMPCLVISSGCMSCGVVLVGSKIEGICFG"
     gene            188105..188551
                     /locus_tag="CTDLC_0165"
                     /db_xref="GeneID:12387642"
     CDS             188105..188551
                     /locus_tag="CTDLC_0165"
                     /codon_start=1
                     /transl_table=11
                     /product="Adherence factor"
                     /protein_id="YP_005812095.1"
                     /db_xref="GI:385244251"
                     /db_xref="GeneID:12387642"
                     /translation="MFQPETVPSNRSTETTPQNIEVYNDRNFTNHTTEDVIRIGERLQ
                     RQFYNMTEESRVPFTTSPSHHTGNWKTAFLYNLSQVVAHIFPSTVQPIRVKPTRIPPS
                     PTPPPEGTTTAETSTSENKVTTISKEQEVTTKPLLVRERRSLLHSQ"
     gene            188548..190467
                     /locus_tag="CTDLC_0166"
                     /db_xref="GeneID:12387643"
     CDS             188548..190467
                     /locus_tag="CTDLC_0166"
                     /codon_start=1
                     /transl_table=11
                     /product="Adherence factor"
                     /protein_id="YP_005812096.1"
                     /db_xref="GI:385244252"
                     /db_xref="GeneID:12387643"
                     /translation="MNVRTYSVQRGGVKTISASAVPPTAAVLSRKKRAIEEKKEEASS
                     GKIENLDASKYDLTPKNIEEKLGITPEQKSTVKDLLNKLKKVISAYNSMPDKNSEAGQ
                     NSLIQQGKYVDAIQKKLPASSQAQPKQAKAKEQKAEEKPKTTPIEGVLETIKTEFKGH
                     RVPVEKIIHGIWIAGAPPDGIEDYMRVFLDTYEGFDFYFWVDENAYAAAKFSSILKKV
                     AFDAAIQDLRSATDESTKAFVKDYDELKQKYEKKVAETTSQAEKDQYLKDLKDLLEKF
                     TKISDEIRGKFDRLFLKNVIVAQNGFFNFCLLKGLGNINDETRAEYLEKELKLPTEEI
                     EQYKKLKETNKEKIAAIVKQLNEKLGSDRVKIKDIKELQSMKQARNVYNYEQEMFLRW
                     NYAAATDQIRMYMLEELGGLYTDLDMMPSYSQEVLELIKKHSDGNRMFEDMSSRRAIS
                     DAVLKMAVGKATTVSMEEVAKDIDVSRLTEEDKTKLNALFKDLEPFAKPDSKGAEAEG
                     GEGAKGMKKSFFQPIDLNIVRNTMPILRRYHHYPELGWFIRGLNGLMVSHKGSTAVSA
                     VIVGQQAAYQELAALRQDVLSGEFFHSLENLTHRNHKERIGNHLVANYLAKSLFFDYC
                     QDSVMPEAVSTLGIR"
     misc_feature    188704..188892
                     /locus_tag="CTDLC_0166"
                     /note="TcdB toxin N-terminal helical domain; Region:
                     TcdB_N; pfam12918"
                     /db_xref="CDD:257401"
     misc_feature    189040..190461
                     /locus_tag="CTDLC_0166"
                     /note="TcdA/TcdB catalytic glycosyltransferase domain;
                     Region: TcdA_TcdB; pfam12919"
                     /db_xref="CDD:257402"
     gene            190523..191854
                     /locus_tag="CTDLC_0167"
                     /db_xref="GeneID:12387644"
     CDS             190523..191854
                     /locus_tag="CTDLC_0167"
                     /codon_start=1
                     /transl_table=11
                     /product="Adherence factor"
                     /protein_id="YP_005812097.1"
                     /db_xref="GI:385244253"
                     /db_xref="GeneID:12387644"
                     /translation="MYAGHIKGAMEHRHWHEFPHLLSKFDITVHARTIKYFAFKGSLA
                     TNDTILFRSYLEPEILDIYNSTPVDLHVWSQYDQIRIHKATLKLEGFQVYNVTTATDA
                     LNRQLMYAQNFVNIRGRDLSIKPFYIRTGSGIGAIQLVFKDLFVNDLSDITDRTFEKE
                     AKPLLAKKPHSLIDPTYKEFLKFFLGETSCDLTQYIQEFGDTSHIIKMIRDPKTHELQ
                     EPAHLPVNPVVLTYTIDPKEEEVRQDKLLFLDKLMKEYRFPQPTQAESYYYIDPVSGD
                     LYITRVALTRPTEKAFLLRLAQFKSRWLDFQNIFISGVRASTGTSKSLEASGTGVMFI
                     GPEIRHIELDFFRHIAGRALPERVSSRSSVVFPTNDQVVLYNPALAMKFYTYTAFMLW
                     NLRDRARGESKRAKAYDNYLLEACMSLDTAGKPHWKIPEGFLQFAFASVLG"
     misc_feature    <190523..191833
                     /locus_tag="CTDLC_0167"
                     /note="Protein of unknown function (DUF3491); Region:
                     DUF3491; pfam11996"
                     /db_xref="CDD:256785"
     gene            191920..192222
                     /locus_tag="CTDLC_0168"
                     /db_xref="GeneID:12387645"
     CDS             191920..192222
                     /locus_tag="CTDLC_0168"
                     /codon_start=1
                     /transl_table=11
                     /product="Adherence factor"
                     /protein_id="YP_005812098.1"
                     /db_xref="GI:385244254"
                     /db_xref="GeneID:12387645"
                     /translation="MSLITTQTGYFARQNRRGGFQVFYSIYGLEGKVQPHQAPGDMLC
                     DITEDVVLTVKDVDESDYQQKRIYVVLDLATEEERRLRADKNVILIPRGENSKKRK"
     misc_feature    192061..>192219
                     /locus_tag="CTDLC_0168"
                     /note="Glycosyltransferase family A (GT-A) includes
                     diverse families of glycosyl transferases with a common
                     GT-A type structural fold; Region: Glyco_tranf_GTA_type;
                     cl11394"
                     /db_xref="CDD:264347"
     gene            192278..192562
                     /gene="trpR"
                     /locus_tag="CTDLC_0169"
                     /db_xref="GeneID:12387646"
     CDS             192278..192562
                     /gene="trpR"
                     /locus_tag="CTDLC_0169"
                     /codon_start=1
                     /transl_table=11
                     /product="Trp operon repressor"
                     /protein_id="YP_005812099.1"
                     /db_xref="GI:385244255"
                     /db_xref="GeneID:12387646"
                     /translation="MKNQEESGWQAFLTLCSKMQKEKFLQDLFSLFLSFSERKDVASR
                     YHIIRALLEGELTQREIAEKYGVSIAQITRGSNALKGLDPQFKEFLQKEI"
     misc_feature    192278..192559
                     /gene="trpR"
                     /locus_tag="CTDLC_0169"
                     /note="trp operon repressor, proteobacterial; Region:
                     TrpR; TIGR01321"
                     /db_xref="CDD:130388"
     gene            192911..194089
                     /gene="trpB"
                     /locus_tag="CTDLC_0170"
                     /db_xref="GeneID:12387647"
     CDS             192911..194089
                     /gene="trpB"
                     /locus_tag="CTDLC_0170"
                     /EC_number="4.2.1.20"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="YP_005812100.1"
                     /db_xref="GI:385244256"
                     /db_xref="GeneID:12387647"
                     /translation="MFKHKHPFGGAFLPEELLAPIQNLKAEWEILKTQQSFLSELDCI
                     LKNYAGRQTPLTEVKNFARAIDGPRVFLKREDLLHTGAHKLNNALGQCLLAKYLGKTR
                     VVAETGAGQHGVATATACAYLGLDCVVYMGAKDVERQKPNVEKMRFLGAEVVSVTKGS
                     CGLKDAVNQALQDWATTHSFTHYCLGSALGPLPYPDIVRFFQSVISAEVKEQIHAVAG
                     RDPDILIACIGGGSNAIGFFHHFIPNPKVQLIGVEGGGLGISSGKHAARFATGRPGVF
                     HGFYSYLLQDDDGQVLQTHSISAGLDYPSVGPDHAEMHESGRAFYTLATDEEALRAFF
                     LLTRNEGIIPALESSHALAHLVSIAPSLPKEQIVIVNLSGRGDKDLPQIIRRNRGIYE
                     "
     misc_feature    192968..194059
                     /gene="trpB"
                     /locus_tag="CTDLC_0170"
                     /note="Tryptophan synthase-beta:  Trptophan synthase is a
                     bifunctional enzyme that catalyses the last two steps in
                     the biosynthesis of L-tryptophan via its alpha and beta
                     reactions. In the alpha reaction, indole 3-glycerol
                     phosphate is cleaved reversibly to...; Region:
                     Trp-synth_B; cd06446"
                     /db_xref="CDD:107207"
     misc_feature    order(193157..193162,193241..193243,193469..193471,
                     193595..193609,193949..193951,194027..194029)
                     /gene="trpB"
                     /locus_tag="CTDLC_0170"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:107207"
     misc_feature    193160..193162
                     /gene="trpB"
                     /locus_tag="CTDLC_0170"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:107207"
     gene            194037..194843
                     /gene="trpA"
                     /locus_tag="CTDLC_0171"
                     /db_xref="GeneID:12387648"
     CDS             194037..194843
                     /gene="trpA"
                     /locus_tag="CTDLC_0171"
                     /EC_number="4.2.1.20"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="YP_005812101.1"
                     /db_xref="GI:385244257"
                     /db_xref="GeneID:12387648"
                     /translation="MIRIFHKSSAETEEFMSKLTQVFKQTKLCIGYLTAGDGGTSYTI
                     EAAKALIQGGVDILELGFPFSDPVADNPEIQVSHDRALAENLTSETLLEIVEGIRAFN
                     QEVPLILYSYYNPLLQRDLDYLRRLKDAGINGVCVIDLPAPLSHGEKSPFFEDLLAVG
                     LDPILLISAGTTPERMSLIQEYARGFLYYIPCQATRDSEVGIKEEFRKVREHFDLPIV
                     DRRDICDKKEAAHVLNYSDGFIVKTAFVHQTTMDSSVETLTALAQTVIPG"
     misc_feature    194118..194825
                     /gene="trpA"
                     /locus_tag="CTDLC_0171"
                     /note="Ttryptophan synthase (TRPS) alpha subunit (TSA).
                     TPRS is a bifunctional tetrameric enzyme (2 alpha and 2
                     beta subunits) that catalyzes the last two steps of
                     L-tryptophan biosynthesis. Alpha and beta subunit catalyze
                     two distinct reactions which are both...; Region:
                     Tryptophan_synthase_alpha; cd04724"
                     /db_xref="CDD:240075"
     misc_feature    order(194211..194213,194244..194246,194256..194258,
                     194598..194600,194697..194702,194760..194765)
                     /gene="trpA"
                     /locus_tag="CTDLC_0171"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:240075"
     misc_feature    order(194211..194213,194244..194246,194370..194372)
                     /gene="trpA"
                     /locus_tag="CTDLC_0171"
                     /note="active site"
                     /db_xref="CDD:240075"
     misc_feature    order(194211..194213,194244..194246,194370..194372)
                     /gene="trpA"
                     /locus_tag="CTDLC_0171"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:240075"
     misc_feature    order(194226..194237,194241..194243,194250..194252,
                     194259..194264,194376..194378,194385..194387,
                     194448..194453,194457..194459,194478..194480,
                     194538..194540,194544..194552,194559..194561)
                     /gene="trpA"
                     /locus_tag="CTDLC_0171"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240075"
     gene            complement(195090..195590)
                     /locus_tag="CTDLC_0172"
                     /db_xref="GeneID:12387649"
     CDS             complement(195090..195590)
                     /locus_tag="CTDLC_0172"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812102.1"
                     /db_xref="GI:385244258"
                     /db_xref="GeneID:12387649"
                     /translation="MRKMNYHNTFVKTSMFFLAKRLVQLNKNPFLLKKFSETTVLFIF
                     ERQLKMWEGYSIDENNYISDYNMEFGRPLLQKLANPVCKALLQKQLEAEQAMTLSNQV
                     TVGDIVLMRSPIFEKSVLLETLINEIIYQESLFLFKKPENVQCPKMSFEHGAHEILLK
                     IFLTVS"
     gene            complement(195609..195779)
                     /locus_tag="CTDLC_1172"
                     /db_xref="GeneID:12387650"
     CDS             complement(195609..195779)
                     /locus_tag="CTDLC_1172"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812103.1"
                     /db_xref="GI:385244259"
                     /db_xref="GeneID:12387650"
                     /translation="MLRLFCLGYFPQLFEKQKNLLEDLIYNKLFVEKTVVMGEGACVV
                     NLAIGGGETILL"
     gene            complement(195847..196137)
                     /locus_tag="CTDLC_0173"
                     /db_xref="GeneID:12387651"
     CDS             complement(195847..196137)
                     /locus_tag="CTDLC_0173"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812104.1"
                     /db_xref="GI:385244260"
                     /db_xref="GeneID:12387651"
                     /translation="MISPDTMKICREICDAILKRDFATFEIERTYKNGSIVYTSRQCP
                     GVEIREIGDQAKAILHNQEELRQAVATLGLKHLIIPPLSIYKHSLLYKRLVI"
     gene            complement(196206..196661)
                     /locus_tag="CTDLC_0174"
                     /db_xref="GeneID:12387652"
     CDS             complement(196206..196661)
                     /locus_tag="CTDLC_0174"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812105.1"
                     /db_xref="GI:385244261"
                     /db_xref="GeneID:12387652"
                     /translation="MLIFFDKSQSGALPDRLERAGNLLRFAVNRGMASQIKVTSAQSG
                     HIFFSEKMISVCKRIACIVLCIVLAPFCLLGALIGTIAYKLSNSYQNALYLFREHRNM
                     CSEVEKAMKGKNKQITRLQRNFRKVLEKKHIADVKKQKEYQEMCRQSES"
     gene            196856..198445
                     /gene="oppA"
                     /locus_tag="CTDLC_0175"
                     /db_xref="GeneID:12387653"
     CDS             196856..198445
                     /gene="oppA"
                     /locus_tag="CTDLC_0175"
                     /note="OppA"
                     /codon_start=1
                     /transl_table=11
                     /product="Oligopeptide-binding protein"
                     /protein_id="YP_005812106.1"
                     /db_xref="GI:385244262"
                     /db_xref="GeneID:12387653"
                     /translation="MHHRKFLAVSIAFVSLAFGLTSCYHKKEEPKDVLRIAICHDPMS
                     LDPRQVFLSKDVSIVKALYEGLVREKEAAFQLALAERYHQSDDGCVYTFFLKNTFWSN
                     GDVVTAYDFEESIKQIYFREIDNPSLRSLALIKNSHAVLTGALPVEDLGVRALNAKTL
                     EIVLENPFPYFLEILAHPVFYPVHTSLREYYKDKRNKRVFPIISNGPFAIQCYEPQRY
                     LLINKNPLYHAKHDVLLNSVCLQIVPDIHTAMQLFQKNHIDLVGLPWSSSFSLEEQRN
                     LPREKLFDYPVLSCSVLFCNIHQTPLNNPSLRTALSLAINRETLLKLAGKGCSATSFV
                     HPQLSQIPATTLSQDERIALAKGYLTEALKTLSQEDLEKITLIYPIESVCLRAVVQEI
                     RQQLFDVLGFKISTLGLEYHCFLDKRSRGEFSLATGNWIADYHQASAFLSVLGNGTRY
                     KDFQLINWQNQKYTNIVAQLLIQESSDLQLMAEQLLLKESPLIPLYHLDYVYAKQPRV
                     SDLQTSSRGEIDLKRVSLAEG"
     misc_feature    196856..198379
                     /gene="oppA"
                     /locus_tag="CTDLC_0175"
                     /note="ABC-type oligopeptide transport system, periplasmic
                     component [Amino acid transport and metabolism]; Region:
                     OppA; COG4166"
                     /db_xref="CDD:226636"
     misc_feature    196949..198421
                     /gene="oppA"
                     /locus_tag="CTDLC_0175"
                     /note="The substrate-binding component of an ABC-type
                     oligopetide import system contains the type 2 periplasmic
                     binding fold; Region: PBP2_OppA; cd08504"
                     /db_xref="CDD:173869"
     misc_feature    order(197021..197023,197639..197641,197714..197716,
                     198086..198088,198134..198136,198140..198154,
                     198347..198349)
                     /gene="oppA"
                     /locus_tag="CTDLC_0175"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:173869"
     gene            complement(198472..198879)
                     /gene="dsbB"
                     /locus_tag="CTDLC_0176"
                     /db_xref="GeneID:12387654"
     CDS             complement(198472..198879)
                     /gene="dsbB"
                     /locus_tag="CTDLC_0176"
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="YP_005812107.1"
                     /db_xref="GI:385244263"
                     /db_xref="GeneID:12387654"
                     /translation="MIKHLRSYCLYLAWLFSCIGTLMSVYYSYILNVEPCLLCYYQRI
                     CLFPLVVILGIAAYREDISIKIYTLPLALVGFGIAIYQVCLQEIPGMTLDICGKVSCS
                     TKLFLLGFITMPMASAAAFCAIACLLVLATKSK"
     misc_feature    complement(198475..198879)
                     /gene="dsbB"
                     /locus_tag="CTDLC_0176"
                     /note="putative disulfide oxidoreductase; Provisional;
                     Region: PRK00611"
                     /db_xref="CDD:100616"
     gene            complement(198876..199724)
                     /gene="dsbA"
                     /locus_tag="CTDLC_0177"
                     /db_xref="GeneID:12387655"
     CDS             complement(198876..199724)
                     /gene="dsbA"
                     /locus_tag="CTDLC_0177"
                     /note="Thiol:disulfide interchange protein"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family thiol:disulfide interchange protein"
                     /protein_id="YP_005812108.1"
                     /db_xref="GI:385244264"
                     /db_xref="GeneID:12387655"
                     /translation="MSFLTHKKSERKEKVFFNKEASFISARKRFRFFYFCLISILNGR
                     MDTRTPLRKKILIISTALGFVLCVGLMIHTKRSIMPPKTHIPTTAKYFPTIGDPYAPI
                     NITVFEEPSCSACEEFSSEVFPLIKKHFVDTGEASLTLVPVCFIRGSMPAAQALLCVY
                     HHDPKRPDPEAYMEYFHRILTYKKTKGSHWATPEVLAKLAEKIPTHSGREINLKGLIQ
                     CINSQRFTEQLKKNNIYGSQIMGGQLATPTAVVGDYLIEDPTFDEIERVITQLRHLQA
                     IEEEVR"
     misc_feature    complement(<199512..>199637)
                     /gene="dsbA"
                     /locus_tag="CTDLC_0177"
                     /note="Multidrug and toxic compound extrusion family and
                     similar proteins; Region: MATE_like; cl09326"
                     /db_xref="CDD:263758"
     misc_feature    complement(198906..199583)
                     /gene="dsbA"
                     /locus_tag="CTDLC_0177"
                     /note="Protein-disulfide isomerase [Posttranslational
                     modification, protein turnover, chaperones]; Region: DsbG;
                     COG1651"
                     /db_xref="CDD:224565"
     misc_feature    complement(198921..199448)
                     /gene="dsbA"
                     /locus_tag="CTDLC_0177"
                     /note="Thioredoxin; Region: Thioredoxin_4; cl17273"
                     /db_xref="CDD:266602"
     gene            199738..200952
                     /locus_tag="CTDLC_0178"
                     /db_xref="GeneID:12387656"
     CDS             199738..200952
                     /locus_tag="CTDLC_0178"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane spanning protein"
                     /protein_id="YP_005812109.1"
                     /db_xref="GI:385244265"
                     /db_xref="GeneID:12387656"
                     /translation="MEKDFLENVYRHFRYRFFKLSILPALLGLWLFFTPNILNYLDYS
                     VILSDKICGVLLILLSALSFYNPVVLQLGIFIGLWVSFFSCSSDLLPLVFAHDSLLGF
                     ATLAIIFLLPNRPEDLEVGPTIPETCHYNPSSGGKRAAVLIFAFVGWLQSRYLTSAAL
                     NIADADTSCSLFFSSTLMVIYSMLIVLSLTGGERRWHTQPKVVFITAILLFIAIGLTL
                     AAILLSQLFLTNYEGVCLTVAPVFSLAFFYDEIRATWNYLSQNYSNRKQLAITAFYGS
                     EYYKESLFWEERSVLPFSQACKQAFAGLSFPLNLIFACIFSIFFVQLNANLSIPDTCR
                     FFVNSACWFILVLSIFSFAESLRHLRWLSLLFAAGIILSPVIFHLPLEASTLLSIIVS
                     GIAFIILSIGRL"
     misc_feature    200125..200562
                     /locus_tag="CTDLC_0178"
                     /note="Vitamin K epoxide reductase (VKOR) family; Region:
                     VKOR; cl01729"
                     /db_xref="CDD:261041"
     misc_feature    order(200245..200247,200263..200265,200440..200442)
                     /locus_tag="CTDLC_0178"
                     /note="putative active site [active]"
                     /db_xref="CDD:240598"
     misc_feature    200434..200442
                     /locus_tag="CTDLC_0178"
                     /note="redox center [active]"
                     /db_xref="CDD:240598"
     gene            complement(200954..201613)
                     /locus_tag="CTDLC_0179"
                     /db_xref="GeneID:12387657"
     CDS             complement(200954..201613)
                     /locus_tag="CTDLC_0179"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812110.1"
                     /db_xref="GI:385244266"
                     /db_xref="GeneID:12387657"
                     /translation="MTIPPLKLVQAARPLYDQQLHKLSREEKLSLQGEIRTHEVRSVP
                     LVFFAMLAAVGAFLALCIGGVLCCIDNVVFLSEIFLPFILPGILSLLLIALLLRLAWK
                     EQKLAAQKQQRIAASCYFESLALCRTYKSGAPSVKGLVNFIQSEILPSGFSKRFKFAV
                     LTQAKPSLLTKKIQLTKTPFDETIETAFSHIREGLYLSESEQRDHDKKLDNEANTSPK
                     G"
     gene            complement(201610..202302)
                     /gene="tauB"
                     /locus_tag="CTDLC_0180"
                     /db_xref="GeneID:12387658"
     CDS             complement(201610..202302)
                     /gene="tauB"
                     /locus_tag="CTDLC_0180"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="YP_005812111.1"
                     /db_xref="GI:385244267"
                     /db_xref="GeneID:12387658"
                     /translation="MLDVKSLYYSHASHSVFEDASASFASGQISMVLGASGSGKTTLF
                     RIIAGLLSCSLGEILWKGQPIQQEQIAYMQQKEALLPWRTVRKNILLLTELGSRKQKT
                     TIEEECFYNVVHSFGLSSLLDRFPDELSGGQRQRVVFAMQSLSPKPILLLDEPFTSLD
                     PITKEILYQDVKRLAKEEGKTIILASHDVQDCLGVGEAFFAIQNQKLHSIALNKEQGI
                     AGLLQQMKDHLV"
     misc_feature    complement(201616..202302)
                     /gene="tauB"
                     /locus_tag="CTDLC_0180"
                     /note="ABC-type nitrate/sulfonate/bicarbonate transport
                     system, ATPase component [Inorganic ion transport and
                     metabolism]; Region: TauB; COG1116"
                     /db_xref="CDD:224041"
     misc_feature    complement(201703..202269)
                     /gene="tauB"
                     /locus_tag="CTDLC_0180"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:266551"
     misc_feature    complement(202180..202203)
                     /gene="tauB"
                     /locus_tag="CTDLC_0180"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(order(201742..201744,201841..201846,
                     202078..202080,202177..202185,202189..202194))
                     /gene="tauB"
                     /locus_tag="CTDLC_0180"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(202078..202089)
                     /gene="tauB"
                     /locus_tag="CTDLC_0180"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(201889..201918)
                     /gene="tauB"
                     /locus_tag="CTDLC_0180"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(201841..201858)
                     /gene="tauB"
                     /locus_tag="CTDLC_0180"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(201823..201834)
                     /gene="tauB"
                     /locus_tag="CTDLC_0180"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(order(201718..201720,201739..201756))
                     /gene="tauB"
                     /locus_tag="CTDLC_0180"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            complement(202340..202413)
                     /locus_tag="CTDLC_r035"
                     /db_xref="GeneID:12387659"
     tRNA            complement(202340..202413)
                     /locus_tag="CTDLC_r035"
                     /product="tRNA-Ile"
                     /db_xref="GeneID:12387659"
     gene            complement(202419..202491)
                     /locus_tag="CTDLC_r034"
                     /db_xref="GeneID:12387660"
     tRNA            complement(202419..202491)
                     /locus_tag="CTDLC_r034"
                     /product="tRNA-Ala"
                     /db_xref="GeneID:12387660"
     gene            complement(202610..203320)
                     /locus_tag="CTDLC_0181"
                     /db_xref="GeneID:12387661"
     CDS             complement(202610..203320)
                     /locus_tag="CTDLC_0181"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812112.1"
                     /db_xref="GI:385244268"
                     /db_xref="GeneID:12387661"
                     /translation="MLSKFCKLSLSAILLINTLAPSETFSEEGTSGFLGRMKSWILKD
                     KTILSTTEESQTSAIEKVSDLLSWKRYDYTQESGFAIQFPESPEHSEQVIEVPQSDLA
                     IRYDTYVAETPSDSTVYVVSIWEYPEKIDISRPELNLQEGFAGMLYALPESQVLYLKA
                     TALQGHKALEFWIACDDVYFRGMLVSVNHTLYQVFMVYKGRSPEILDKEYSTFIQSFK
                     VTKVRNSKKMDIRKRVSL"
     gene            203652..204452
                     /gene="kdsB"
                     /locus_tag="CTDLC_0182"
                     /db_xref="GeneID:12387662"
     CDS             203652..204452
                     /gene="kdsB"
                     /locus_tag="CTDLC_0182"
                     /EC_number="2.7.7.38"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="YP_005812113.1"
                     /db_xref="GI:385244269"
                     /db_xref="GeneID:12387662"
                     /translation="MLLRWDVINGGAVFAFLTSKKVGILPSRWGSSRFPGKPLAKILG
                     KTLVQRSYENALSSQSLDCVVVATDDQRIFDHVVEFGGLCVMTSTSCANGTERVEEVV
                     SRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHK
                     VKCVFDKNGKALYFSRSAIPHNFKHPTPIYLHIGVYAFRKAFLSEYVKIPPSSLSLAE
                     DLEQLRVLEIGRSIYVHVVQNATGPSVDYPEDITKVEQYLLCLSKASF"
     misc_feature    203709..204422
                     /gene="kdsB"
                     /locus_tag="CTDLC_0182"
                     /note="CMP-KDO synthetase catalyzes the activation of KDO
                     which is an essential component of the lipopolysaccharide;
                     Region: CMP-KDO-Synthetase; cd02517"
                     /db_xref="CDD:133010"
     misc_feature    order(203727..203735,203850..203852,203931..203933,
                     203997..203999,204003..204005)
                     /gene="kdsB"
                     /locus_tag="CTDLC_0182"
                     /note="Ligand binding site; other site"
                     /db_xref="CDD:133010"
     misc_feature    order(204072..204074,204123..204125,204141..204149,
                     204165..204170,204174..204194,204213..204215,
                     204288..204293,204300..204308,204327..204338)
                     /gene="kdsB"
                     /locus_tag="CTDLC_0182"
                     /note="oligomer interface; other site"
                     /db_xref="CDD:133010"
     gene            204428..206047
                     /gene="pyrG"
                     /locus_tag="CTDLC_0183"
                     /db_xref="GeneID:12387663"
     CDS             204428..206047
                     /gene="pyrG"
                     /locus_tag="CTDLC_0183"
                     /EC_number="6.3.4.2"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="YP_005812114.1"
                     /db_xref="GI:385244270"
                     /db_xref="GeneID:12387663"
                     /translation="MSFKSIFLTGGVVSSLGKGLTAASLALLLERQDLKVAMLKLDPY
                     LNVDPGTMNPYEHGEVYVTDDGVETDLDLGHYHRFSSVQLSKYSTATSGQIYTKVLTK
                     ERNGEFLGSTVQVIPHVTNEIINVIQSCADHHKPDILIVEIGGTIGDIESLPFLEAVR
                     QFRCEHPQDCLSIHMTYVPYLRAAKEIKTKPTQHSVQNLRSIGISPDVILCRSEAPLS
                     TEVKRKISLFCNVPEHAVFNAIDLERSIYEMPLLLAKENISDFLLNKLGFSPKPLDLS
                     DWQDLVEALCDKERQHVRIGLVGKYLEHKDAYKSVFESLFHASVPANCSLELVPIAPE
                     SEDLLEQLSQCDGCLIPGGFGTRSWEGKISAARYCRERNIPCFGICLGMQALVVEYAR
                     NVLDKPLANSMEINPETPDPVVCMMEGQDSVVKGGTMRLGAYPCRIAPGSLASAAYKT
                     DLVQERHRHRYEVNPSYIERLEEHGLKIAGVCPLGELCEIVEIPNHRWMLGVQFHPEF
                     LSKLAKPHPLFIEFIRAAKAYSLEKANHEHR"
     misc_feature    204437..206026
                     /gene="pyrG"
                     /locus_tag="CTDLC_0183"
                     /note="CTP synthetase; Validated; Region: pyrG; PRK05380"
                     /db_xref="CDD:235437"
     misc_feature    204437..205201
                     /gene="pyrG"
                     /locus_tag="CTDLC_0183"
                     /note="CTP synthetase (CTPs) is a two-domain protein,
                     which consists of an N-terminal synthetase domain and
                     C-terminal glutaminase domain. The enzymes hydrolyze the
                     amide bond of glutamine to ammonia and glutamate at the
                     glutaminase domains and transfer nascent...; Region: CTGs;
                     cd03113"
                     /db_xref="CDD:239387"
     misc_feature    order(204467..204469,204476..204487,204545..204547,
                     204551..204559,204635..204637,204641..204643,
                     204650..204655,204851..204853,204857..204859)
                     /gene="pyrG"
                     /locus_tag="CTDLC_0183"
                     /note="Catalytic site [active]"
                     /db_xref="CDD:239387"
     misc_feature    order(204470..204484,204545..204547,204860..204862,
                     204989..204997,205097..205099)
                     /gene="pyrG"
                     /locus_tag="CTDLC_0183"
                     /note="active site"
                     /db_xref="CDD:239387"
     misc_feature    order(204545..204559,204857..204862,204878..204880,
                     204989..204997,205097..205099)
                     /gene="pyrG"
                     /locus_tag="CTDLC_0183"
                     /note="UTP binding site [chemical binding]; other site"
                     /db_xref="CDD:239387"
     misc_feature    205304..205996
                     /gene="pyrG"
                     /locus_tag="CTDLC_0183"
                     /note="Type 1 glutamine amidotransferase (GATase1) domain
                     found in Cytidine Triphosphate Synthetase; Region:
                     GATase1_CTP_Synthase; cd01746"
                     /db_xref="CDD:153217"
     misc_feature    order(205478..205492,205565..205570,205577..205579,
                     205637..205639,205799..205810,205940..205942,
                     205946..205948)
                     /gene="pyrG"
                     /locus_tag="CTDLC_0183"
                     /note="active site"
                     /db_xref="CDD:153217"
     misc_feature    order(205484..205486,205568..205570)
                     /gene="pyrG"
                     /locus_tag="CTDLC_0183"
                     /note="putative oxyanion hole; other site"
                     /db_xref="CDD:153217"
     misc_feature    order(205565..205567,205940..205942,205946..205948)
                     /gene="pyrG"
                     /locus_tag="CTDLC_0183"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:153217"
     gene            206034..206480
                     /gene="yqgF"
                     /locus_tag="CTDLC_0184"
                     /db_xref="GeneID:12387664"
     CDS             206034..206480
                     /gene="yqgF"
                     /locus_tag="CTDLC_0184"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812115.1"
                     /db_xref="GI:385244271"
                     /db_xref="GeneID:12387664"
                     /translation="MNIAKQQQAFLGIDYGKKRIGLAFASSPLLIPLPIGNVEARSSL
                     TLTAQALVSIIKERAVTTVVFGNPLPMQKAYASSVQSEIQELAALIQEMTAIEVILWD
                     ERLSSAQAERMLKSDCGLNRKQRKNPSDSLAATLILSSFLDSRKLY"
     misc_feature    206055..206474
                     /gene="yqgF"
                     /locus_tag="CTDLC_0184"
                     /note="Predicted endonuclease involved in recombination
                     (possible Holliday junction resolvase in Mycoplasmas and
                     B. subtilis) [DNA replication, recombination, and repair];
                     Region: COG0816"
                     /db_xref="CDD:223886"
     gene            206597..208120
                     /gene="zwf"
                     /locus_tag="CTDLC_0185"
                     /db_xref="GeneID:12387665"
     CDS             206597..208120
                     /gene="zwf"
                     /locus_tag="CTDLC_0185"
                     /EC_number="1.1.1.49"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate 1-dehydrogenase"
                     /protein_id="YP_005812116.1"
                     /db_xref="GI:385244272"
                     /db_xref="GeneID:12387665"
                     /translation="MEEIKDFGPTLPACPPCIVVIFGATGDLTSRKLFPALYNLTKEG
                     RLSENFVCVGFARRPKSHEQFREEMKLAVQHFSHSSEIDIRVWESLENRIFYHQANFS
                     DAEGYSVLKAYLEQLDQQYGTQGNRLFYLSTPPDYFQEIIRNLNRHQLFYHEQGAQQP
                     WSRLIIEKPFGVNLETARELQQCIDANIDEESVYRIDHYLGKETVQNILTIRFANTLF
                     ESCWNSQYIDHVQISVSESIGIGSRGNFFEKSGMLRDMVQNHLTQLLCLLTMEPPSEF
                     FSEEIKKEKIKILKKILPIREEDAVRGQYGEGIVQDVSVLGYREEENVDPNSSVETYV
                     ALKLFIDNPRWKGVPFYLQAGKRLPKRTTDIAVIFKKSSYNLFNAENCPLCPLENDLL
                     IIRIQPDEGVALQFNCKVPGTNKLVRPVKMDFRYDSYFNTVTPEAYERLLCDCILGDR
                     TLFTSNEEVLASWELFSPLLEKWSQVRPIFPNYMAGSLRPQEADELLSRDGKAWRPY"
     misc_feature    206639..208111
                     /gene="zwf"
                     /locus_tag="CTDLC_0185"
                     /note="glucose-6-phosphate 1-dehydrogenase; Validated;
                     Region: PRK05722"
                     /db_xref="CDD:235579"
     misc_feature    206654..207217
                     /gene="zwf"
                     /locus_tag="CTDLC_0185"
                     /note="Glucose-6-phosphate dehydrogenase, NAD binding
                     domain; Region: G6PD_N; pfam00479"
                     /db_xref="CDD:249890"
     misc_feature    207221..208111
                     /gene="zwf"
                     /locus_tag="CTDLC_0185"
                     /note="Glucose-6-phosphate dehydrogenase, C-terminal
                     domain; Region: G6PD_C; pfam02781"
                     /db_xref="CDD:251528"
     gene            208127..208915
                     /gene="devB"
                     /locus_tag="CTDLC_0186"
                     /db_xref="GeneID:12387666"
     CDS             208127..208915
                     /gene="devB"
                     /locus_tag="CTDLC_0186"
                     /EC_number="3.1.1.31"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="YP_005812117.1"
                     /db_xref="GI:385244273"
                     /db_xref="GeneID:12387666"
                     /translation="MQEVVYMATLISLNDANRMLIADSQEEFLQIACYDWISTANKAI
                     HKRGAFYVALSGGKTPLQIFQEIVKKRAAISDCSKIVVFWGDERANEDVEAGSNYLKA
                     MDILKGLRIPEDQIFRMDTADPKGDEAYEALIQKYVPDAIFDMVMLGVGEDGHTLSLF
                     PETHALEEKERFVVFNEVPQLHTRRMTLTFPIVRQARHLVAYVQGENKQDLFHKLVHP
                     LGRDTFPIERVGTPLNPVQWVLSSDSCRKTDLADIPADCKLEMF"
     misc_feature    208202..208840
                     /gene="devB"
                     /locus_tag="CTDLC_0186"
                     /note="6PGL: 6-Phosphogluconolactonase (6PGL) subfamily;
                     6PGL catalyzes the second step of the oxidative phase of
                     the pentose phosphate pathway, the hydrolyzation of
                     6-phosphoglucono-1,5-lactone (delta form) to
                     6-phosphogluconate. 6PGL is thought to guard...; Region:
                     6PGL; cd01400"
                     /db_xref="CDD:238694"
     misc_feature    order(208298..208303,208388..208390,208589..208591,
                     208679..208681,208748..208750)
                     /gene="devB"
                     /locus_tag="CTDLC_0186"
                     /note="putative active site [active]"
                     /db_xref="CDD:238694"
     gene            complement(208912..209784)
                     /gene="dnaX_1"
                     /locus_tag="CTDLC_0187"
                     /db_xref="GeneID:12387667"
     CDS             complement(208912..209784)
                     /gene="dnaX_1"
                     /locus_tag="CTDLC_0187"
                     /EC_number="2.7.7.7"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="YP_005812118.1"
                     /db_xref="GI:385244274"
                     /db_xref="GeneID:12387667"
                     /translation="MESAAWEALIQRVRDQKLPSAIILHGQDLSNLSARAYEYASLII
                     KETLPEAAYKLANKLHPDMHEYSPQGKGRLHTIETPRAIRKDIWIHPYESPYKIYIIY
                     EADRITLDAISAFLKLLEDPPQYGMFILVSALPQRLPPTIRSRCVSFRIPMEEKTLVS
                     KKDIAFLIGLAQGKESVTRIGSQVKGTADEDKQVLRDKTKAMLTVLLQLFRDRFLLAK
                     KVPVSLLAYPDLLNEIKTMPVYPLEEVLSIITRAVQALDSYSSAPSCLEWICLQLWSF
                     KNRQQMAIRNRRRS"
     misc_feature    complement(208915..209784)
                     /gene="dnaX_1"
                     /locus_tag="CTDLC_0187"
                     /note="DNA polymerase III subunit delta'; Validated;
                     Region: PRK05917"
                     /db_xref="CDD:102059"
     misc_feature    complement(<209350..>209490)
                     /gene="dnaX_1"
                     /locus_tag="CTDLC_0187"
                     /note="DNA polymerase III subunit delta'; Validated;
                     Region: PRK08485"
                     /db_xref="CDD:236274"
     gene            complement(209798..210409)
                     /gene="tmk"
                     /locus_tag="CTDLC_0188"
                     /db_xref="GeneID:12387668"
     CDS             complement(209798..210409)
                     /gene="tmk"
                     /locus_tag="CTDLC_0188"
                     /EC_number="2.7.4.9"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate kinase"
                     /protein_id="YP_005812119.1"
                     /db_xref="GI:385244275"
                     /db_xref="GeneID:12387668"
                     /translation="MFIVVEGGEGAGKTQFIQALSKRLIEEGREIVTTREPGGCSLGD
                     SVRGLLLDPEQKISPYAELLLFLAARAQHIQEKIIPALKSGKTVISDRFHDSTIVYQG
                     IAGGLGESFVTNLCYHVVGDKPFLPDITFLLDIPAREGLLRKARQKHLDKFEQKPQIF
                     HRSVREGFLALAEKAPDRYKVLDALLPTEASVDQALLQIRALI"
     misc_feature    complement(209801..210409)
                     /gene="tmk"
                     /locus_tag="CTDLC_0188"
                     /note="thymidylate kinase; Validated; Region: tmk;
                     PRK00698"
                     /db_xref="CDD:234814"
     misc_feature    complement(209807..210409)
                     /gene="tmk"
                     /locus_tag="CTDLC_0188"
                     /note="Thymidine monophosphate kinase (TMPK), also known
                     as thymidylate kinase, catalyzes the phosphorylation of
                     thymidine monophosphate (TMP) to thymidine diphosphate
                     (TDP) utilizing ATP as its preferred phophoryl donor. TMPK
                     represents the rate-limiting step...; Region: TMPK;
                     cd01672"
                     /db_xref="CDD:238835"
     misc_feature    complement(order(209969..209971,210110..210112,
                     210134..210139,210200..210202,210212..210214,
                     210368..210370))
                     /gene="tmk"
                     /locus_tag="CTDLC_0188"
                     /note="TMP-binding site; other site"
                     /db_xref="CDD:238835"
     misc_feature    complement(order(209858..209860,209981..209983,
                     210365..210367))
                     /gene="tmk"
                     /locus_tag="CTDLC_0188"
                     /note="ATP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238835"
     gene            complement(210411..212921)
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /db_xref="GeneID:12387669"
     CDS             complement(210411..212921)
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /EC_number="5.99.1.3"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="YP_005812120.1"
                     /db_xref="GI:385244276"
                     /db_xref="GeneID:12387669"
                     /translation="MLNKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPS
                     QRRILYAMKQLNLTPGVKHRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPL
                     VDGQGNFGSIDGDPAAAMRYTEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFP
                     SKFPNLLCNGSSGIAVGMATNIPPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFP
                     TGGIICGTEGIRSTYYTGRGKLRLRARMHVEENSDKQRENIILTEMPYNVNKSRLIEQ
                     IAELINEKTLTGISDVRDESDKDGIRVVLELKKGESSEVVINRLYKFTDVQVTFGANM
                     LALDKNLPRTMNIHRMISAWIRHRMDVIQRRTRYELNKAEARAHILEGFLKALSCMDE
                     VVKTIRESSNKEHAKQQLVELFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEK
                     ITYYRKVLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVII
                     TISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQ
                     CYWLKVWRLPEGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGEYLFLATKKGVV
                     KKVSLDAFGSPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVR
                     PMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSV
                     GVRSIVINQRNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNL
                     REGDTLVAMEKLSINTESVETEENLAASVQSGQDTIEE"
     misc_feature    complement(210489..212900)
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /note="DNA gyrase, A subunit; Region: gyrA; TIGR01063"
                     /db_xref="CDD:233256"
     misc_feature    complement(211497..212834)
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /note="DNA Topoisomerase, subtype IIA; domain A';
                     bacterial DNA topoisomerase IV (C subunit, ParC),
                     bacterial DNA gyrases (A subunit, GyrA),mammalian DNA
                     toposiomerases II. DNA topoisomerases are essential
                     enzymes that regulate the conformational changes...;
                     Region: TOP4c; cd00187"
                     /db_xref="CDD:238111"
     misc_feature    complement(order(212445..212447,212454..212525,
                     212529..212585,212589..212738,212751..212834))
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /note="CAP-like domain; other site"
                     /db_xref="CDD:238111"
     misc_feature    complement(212556..212558)
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /note="active site"
                     /db_xref="CDD:238111"
     misc_feature    complement(order(211608..211658,211698..211703,
                     211734..211745,211752..211760))
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /note="primary dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238111"
     misc_feature    complement(211263..211403)
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:252298"
     misc_feature    complement(211101..211256)
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:252298"
     misc_feature    complement(210951..211085)
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:252298"
     misc_feature    complement(210792..210938)
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:252298"
     misc_feature    complement(210639..210785)
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:252298"
     misc_feature    complement(210489..210632)
                     /gene="gyrA_1"
                     /locus_tag="CTDLC_0189"
                     /note="DNA gyrase C-terminal domain, beta-propeller;
                     Region: DNA_gyraseA_C; pfam03989"
                     /db_xref="CDD:252298"
     gene            complement(212936..215350)
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /db_xref="GeneID:12387670"
     CDS             complement(212936..215350)
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /EC_number="5.99.1.3"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit B"
                     /protein_id="YP_005812121.1"
                     /db_xref="GI:385244277"
                     /db_xref="GeneID:12387670"
                     /translation="MDAQEKKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYE
                     VVDNSIDEAMAGFCTEVVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVV
                     LTVLHAGGKFDKDSYKVSGGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLT
                     TLQVLGPTDKRGTEVLFYPDPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDT
                     GFDKVVFFYEGGIQSFVSYLNQNKEILFPNPIYMQGSRPGDDGDIEFEAALQWNSGYS
                     ELIYSYANNIPTRQGGTHLTGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVA
                     IVSVKVPNPQFEGQTKQKLGNSDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAA
                     QAREAAKRARELTLRKSALDSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRD
                     RRFQAILPIRGKILNVEKARLQKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIII
                     MTDADVDGSHIRTLLLTFFYRHMSALIENECVYIAQPPLYRVSKKKDFRYILSEKEMD
                     GYLLNLGTKESQIVFDDTLRDLRGEALETFVNLILEVESFIVSLEKKAIPFSEFLDMF
                     RDGAYPLYYYPPESGKQGGSYLYSHEEKEAAIAANEESASRILELYKGSVLEELQRDL
                     GDYGYDIRNYLHPKGSGITVSTEDPKISPYVCYTLKEVIDYLKGLGRKGIEIQRYKGL
                     GEMNADQLWDTTMNPEQRTLVRVSLKDAVEADHIFTMLMGEEVPPRREFIESHALSIR
                     MNNLDI"
     misc_feature    complement(212939..215347)
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="DNA gyrase subunit B; Provisional; Region: gyrB;
                     PRK14939"
                     /db_xref="CDD:237860"
     misc_feature    complement(214925..215239)
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="Histidine kinase-like ATPases; This family includes
                     several ATP-binding proteins for example: histidine
                     kinase, DNA gyrase B, topoisomerases, heat shock protein
                     HSP90, phytochrome-like ATPases and DNA mismatch repair
                     proteins; Region: HATPase_c; cd00075"
                     /db_xref="CDD:238030"
     misc_feature    complement(order(214967..214978,215111..215116,
                     215120..215122,215126..215128,215132..215134,
                     215198..215200,215207..215209,215219..215221))
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    complement(215207..215209)
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="Mg2+ binding site [ion binding]; other site"
                     /db_xref="CDD:238030"
     misc_feature    complement(order(214970..214972,214976..214978,
                     215114..215116,215120..215122))
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="G-X-G motif; other site"
                     /db_xref="CDD:238030"
     misc_feature    complement(214139..214666)
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="TopoIIA_Trans_DNA_gyrase: Transducer domain, having
                     a ribosomal S5 domain 2-like fold, of the type found in
                     proteins of the type IIA family of DNA topoisomerases
                     similar to the B subunits of E. coli DNA gyrase and E.
                     coli Topoisomerase IV which are; Region:
                     TopoII_Trans_DNA_gyrase; cd00822"
                     /db_xref="CDD:238419"
     misc_feature    complement(214499..214501)
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="anchoring element; other site"
                     /db_xref="CDD:238419"
     misc_feature    complement(order(214145..214147,214157..214159,
                     214169..214174,214307..214309,214313..214318,
                     214325..214327))
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238419"
     misc_feature    complement(order(214301..214303,214307..214309))
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238419"
     misc_feature    complement(213716..214060)
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM)
                     nucleotidyl transferase/hydrolase domain of the type found
                     in proteins of the type IIA family of DNA topoisomerases
                     similar to the Escherichia coli GyrB subunit. TopoIIA
                     enzymes cut both strands of the...; Region:
                     TOPRIM_TopoIIA_GyrB; cd03366"
                     /db_xref="CDD:173786"
     misc_feature    complement(order(213806..213808,213812..213814,
                     213818..213820,214028..214030,214037..214042))
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="active site"
                     /db_xref="CDD:173786"
     misc_feature    complement(order(213818..213820,214040..214042))
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="putative metal-binding site [ion binding]; other
                     site"
                     /db_xref="CDD:173786"
     misc_feature    complement(212978..213169)
                     /gene="gyrB"
                     /locus_tag="CTDLC_0190"
                     /note="DNA gyrase B subunit, carboxyl terminus; Region:
                     DNA_gyraseB_C; pfam00986"
                     /db_xref="CDD:250273"
     gene            complement(215353..215703)
                     /locus_tag="CTDLC_0191"
                     /db_xref="GeneID:12387671"
     CDS             complement(215353..215703)
                     /locus_tag="CTDLC_0191"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812122.1"
                     /db_xref="GI:385244278"
                     /db_xref="GeneID:12387671"
                     /translation="MSFYPQNLPSFRRRKPSRTDSPIKHAKHFLRDHLSHLRKILAGK
                     PQEVIEAWYEILGKKYNGMTQAIGLKDGILSIKVRNASLYAVLKQSSQKELISRIHSA
                     VPGAKVKEIRFLLG"
     misc_feature    complement(215365..215631)
                     /locus_tag="CTDLC_0191"
                     /note="Protein of unknown function (DUF721); Region:
                     DUF721; pfam05258"
                     /db_xref="CDD:253119"
     gene            complement(215850..216623)
                     /locus_tag="CTDLC_0192"
                     /db_xref="GeneID:12387672"
     CDS             complement(215850..216623)
                     /locus_tag="CTDLC_0192"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812123.1"
                     /db_xref="GI:385244279"
                     /db_xref="GeneID:12387672"
                     /translation="MFFSGSVETLPPSTCLISKKTRKEEFVRSVGQEASQNTLSWTIR
                     PRIPSIIQGSKEVSLALFVLGTVLAIVGACAAAVGGAFSVCLGVLFLGGVVLATGLLL
                     AVLEFCHIRSSMEKYVILTKQDLFKEPVIQEEQATPLIEEASYTCEPGIPLSGPEEVQ
                     QERPVILQKDLDLSHAPKYIAVGSHVVELVKAGKIGRNGERLLEEGIDTDQNFVRVWD
                     ELFILGQRGEMVRLDGFCCKVLPKKSKSESINNLVSNDC"
     gene            complement(216650..217768)
                     /gene="tgt"
                     /locus_tag="CTDLC_0193"
                     /db_xref="GeneID:12387673"
     CDS             complement(216650..217768)
                     /gene="tgt"
                     /locus_tag="CTDLC_0193"
                     /EC_number="2.4.2.29"
                     /codon_start=1
                     /transl_table=11
                     /product="queuine tRNA-ribosyltransferase"
                     /protein_id="YP_005812124.1"
                     /db_xref="GI:385244280"
                     /db_xref="GeneID:12387673"
                     /translation="MALRFEILHQSKKSRARVGRIETAHGYIDTPAFVPVATNGALKG
                     VLDHSNIPLMFCNTYHLIVHPGAEAIAAMGGLHQFIGRNAPIITDSGGFQIFSLAYGS
                     VAEEIKSCGKKKGGNTIIKVNDDGVHFKSYRDGRKLFLSPEISVQAQKDLGADIILPL
                     DELLPFHADPTYFHQSSQRTYVWEKRSLDYHLKNPGIQSMYGVIHGGTFPDQRKLGCK
                     FVEDLPFDGSAIGGSLGKNLQDIVEVVGVTAANLSAERPRHLLGIGDLPSIWATVGFG
                     IDSFDSSYPTKAARHGMILTSQGPLKINNQRYSSDLNPIEPGCSCLACSQGITRAYLR
                     HLFKVHEPNAGIWASIHNMHHMQKVMREIREGILNDRI"
     misc_feature    complement(216653..217768)
                     /gene="tgt"
                     /locus_tag="CTDLC_0193"
                     /note="queuine tRNA-ribosyltransferase; Provisional;
                     Region: PRK01008"
                     /db_xref="CDD:134464"
     misc_feature    complement(216653..217756)
                     /gene="tgt"
                     /locus_tag="CTDLC_0193"
                     /note="Queuine/archaeosine tRNA-ribosyltransferase
                     [Translation, ribosomal structure and biogenesis]; Region:
                     Tgt; COG0343"
                     /db_xref="CDD:223420"
     gene            complement(217895..219367)
                     /gene="mgtE"
                     /locus_tag="CTDLC_0194"
                     /db_xref="GeneID:12387674"
     CDS             complement(217895..219367)
                     /gene="mgtE"
                     /locus_tag="CTDLC_0194"
                     /note="protein MgtE"
                     /codon_start=1
                     /transl_table=11
                     /product="Mg2+ transporter"
                     /protein_id="YP_005812125.1"
                     /db_xref="GI:385244281"
                     /db_xref="GeneID:12387674"
                     /translation="MKEQNRNEEKLDVALTSGNLMDSKTSHLDDELCFKLEEAFDTLT
                     AGEHSQDLTSIVSVYNPIDLAYAVSCLPSDSRSILYKNLDSIASKIAFIINTDSASRW
                     AIFRNLSDGEICALIEQMPPDEAIWVLDDIPDRRYRRILDLIDVKKALKIRDLQKHGR
                     NTAGRLMTNEFFAFLMETTVKEVATCIRNNPGIDLTRLVFVLDFKGELQGFVTDRSLI
                     IASPEMPLKQIMRPIEHKVLADTTREEVVDLVERYKVAVLPVVDEENFLIGAITYEDV
                     VETIEDIADETIARMAGTTEDVGYHDCHVVQRFLLRAPWLLITLCAGLVSASVMAYFQ
                     KIAPTLLAMVIFFIPLVNGLSGNVGVQCSTILVRSMATGTLSFGRRRETILKEMSIGL
                     LTGVALGILCGLVVCCMGCLGLGLFATGGVQLGVTVSVGILGASLTATTLGVLSPFFF
                     AKIGVDPALASGPIVTALNDIMSMVIFLLITGTLNVLFFK"
     misc_feature    complement(217901..219283)
                     /gene="mgtE"
                     /locus_tag="CTDLC_0194"
                     /note="Mg/Co/Ni transporter MgtE (contains CBS domain)
                     [Inorganic ion transport and metabolism]; Region: MgtE;
                     COG2239"
                     /db_xref="CDD:225148"
     misc_feature    complement(218894..219193)
                     /gene="mgtE"
                     /locus_tag="CTDLC_0194"
                     /note="MgtE intracellular N domain; Region: MgtE_N;
                     pfam03448"
                     /db_xref="CDD:146204"
     misc_feature    complement(218528..218851)
                     /gene="mgtE"
                     /locus_tag="CTDLC_0194"
                     /note="This cd contains two tandem repeats of the
                     cystathionine beta-synthase (CBS pair) domain in the
                     magnesium transporter, MgtE.  MgtE and its homologs are
                     found in eubacteria, archaebacteria, and eukaryota.
                     Members of this family transport Mg2+ or other...; Region:
                     CBS_pair_Mg_transporter; cd04606"
                     /db_xref="CDD:239979"
     misc_feature    complement(217925..218329)
                     /gene="mgtE"
                     /locus_tag="CTDLC_0194"
                     /note="Divalent cation transporter; Region: MgtE;
                     pfam01769"
                     /db_xref="CDD:110745"
     gene            complement(219746..220837)
                     /locus_tag="CTDLC_0195"
                     /db_xref="GeneID:12387675"
     CDS             complement(219746..220837)
                     /locus_tag="CTDLC_0195"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane spanning protein"
                     /protein_id="YP_005812126.1"
                     /db_xref="GI:385244282"
                     /db_xref="GeneID:12387675"
                     /translation="MVSMSLNLPPAEVRLRPVTAKSFPNSSAWRATQKRITGCSLNAS
                     SYRPSSARVISFVVGVLVVLGWICFRIAYLANSRVLTFPKMFAIAILPFILFGGGLAI
                     LFRIAGKVDVLYGKKIQPFISRQWERVILCEKEGEFIRPIQEPDMYMDVSLLDRTGSG
                     IAPVYTYPPMDARTVICVVTSILLPIFSIVRMLYNIFRFFIVPFYILFQMVRQNYQTD
                     IPKEERFVCSDIVREMTRSLLQAVKAPFYGAVCYLANLYGLLNPLSGRVVLASLERDW
                     NNDVIRSRGVWGIFCEKNYMFEGGGTRSGLGQNAWYLLGCFQPVQLFLLKDGVIISGA
                     RPSIQSFPESKEYLASFLYGAVPGRLAGF"
     gene            221043..221381
                     /locus_tag="CTDLC_0196"
                     /db_xref="GeneID:12387676"
     CDS             221043..221381
                     /locus_tag="CTDLC_0196"
                     /codon_start=1
                     /transl_table=11
                     /product="Putative transport protein"
                     /protein_id="YP_005812127.1"
                     /db_xref="GI:385244283"
                     /db_xref="GeneID:12387676"
                     /translation="MDFKTFMATTVNPNYSLPFCEKMVSSATLAAHSFFNHIKLLIPL
                     LVGYFCILLGALILTGVITTIPSIAASYFLSLGVTLVIVGAGLCAAFKRPLFSVTQSK
                     ASTLLHISCD"
     gene            221448..222473
                     /gene="gcp_1"
                     /locus_tag="CTDLC_0197"
                     /db_xref="GeneID:12387677"
     CDS             221448..222473
                     /gene="gcp_1"
                     /locus_tag="CTDLC_0197"
                     /EC_number="3.4.24.57"
                     /codon_start=1
                     /transl_table=11
                     /product="O-sialoglycoprotein endopeptidase"
                     /protein_id="YP_005812128.1"
                     /db_xref="GI:385244284"
                     /db_xref="GeneID:12387677"
                     /translation="MFAMLTLGLESSCDETSCSLVQNGKILANKIASQDIHASYGGVI
                     PELASRAHLQTFPELLTAATQSAGVSLEDIELISVANTPGLIGALSIGVNFAKGLASG
                     LKRPLIGVNHVEAHLYAACMEAPATQFPALGLAISGAHTSLFLMPDATTFLLIGKTRD
                     DAIGETFDKVARFLGLPYPGGQKLEELAREGDADAFAFSPARVSGYDFSFSGLKTAVL
                     YALKGNNSSAKAPFPEVSETQKRNIAASFQKAVFMTIAQKLPDIVKTFSCESLIVGGG
                     VANNSYFRRLLNQICSLPIYFPSSQLCSDNAAMIAGLGERLFCNRTHVSKEVIPCARY
                     QWESACS"
     misc_feature    221457..222461
                     /gene="gcp_1"
                     /locus_tag="CTDLC_0197"
                     /note="Metal-dependent proteases with possible chaperone
                     activity [Posttranslational modification, protein
                     turnover, chaperones]; Region: QRI7; COG0533"
                     /db_xref="CDD:223607"
     misc_feature    221463..>221780
                     /gene="gcp_1"
                     /locus_tag="CTDLC_0197"
                     /note="Inactive homolog of metal-dependent proteases,
                     putative molecular chaperone [Posttranslational
                     modification, protein turnover, chaperones]; Region:
                     COG1214; cl17884"
                     /db_xref="CDD:248438"
     misc_feature    <222192..222440
                     /gene="gcp_1"
                     /locus_tag="CTDLC_0197"
                     /note="Nucleotide-Binding Domain of the sugar
                     kinase/HSP70/actin superfamily; Region:
                     NBD_sugar-kinase_HSP70_actin; cl17037"
                     /db_xref="CDD:266502"
     gene            222437..223993
                     /gene="oppA"
                     /locus_tag="CTDLC_0198"
                     /db_xref="GeneID:12387678"
     CDS             222437..223993
                     /gene="oppA"
                     /locus_tag="CTDLC_0198"
                     /note="OppA"
                     /codon_start=1
                     /transl_table=11
                     /product="Oligopeptide-binding protein"
                     /protein_id="YP_005812129.1"
                     /db_xref="GI:385244285"
                     /db_xref="GeneID:12387678"
                     /translation="MRKISVGICLLLALATSGCSKSSSNATHRSPATHTVAVSVKDDP
                     RTFDPREVRLLSDINLIHHLYEGLVQETPSGEVFPALAESFFLSEDKKTYTFNLKKAF
                     WSNGDLITAHDFVRSWNDVLQNRVASIYSFAFLPIDVNKDSGFFAKDDHTLVINLLTP
                     TPHFLKLLTLPVFYPVHSQHQIRKEEKSLPISTGAFFLKEKKDRRWLKLEKSPYYYNK
                     DQVAVQEICIHIIPDQQTASALFNQGKLDWQGLPWGHSIPQETLATTNKRRAPRSFDI
                     SGTSWLTFNTAKKPFSHSKLRQALSLVLNKEALASLAFVKPAKHLLPAHLHTYPEQPS
                     YKQQEAITLAKSLLEEALTELNMTIEDLEKYPLTFSATSTMNSQIAQMLRDQWRRSLG
                     ITFPICGKEYALLQNDLIGNTFFMSIGGWFADFSDPLAFLSIFSSKGVKPYALQDPQF
                     DQLILSIETEKNPQKRSALISEASLYIERQNVIEPLYHDVFHYTTNNKLSFVRLHPSG
                     LVDMRYAKNS"
     misc_feature    222437..223984
                     /gene="oppA"
                     /locus_tag="CTDLC_0198"
                     /note="ABC-type oligopeptide transport system, periplasmic
                     component [Amino acid transport and metabolism]; Region:
                     OppA; COG4166"
                     /db_xref="CDD:226636"
     misc_feature    222539..223981
                     /gene="oppA"
                     /locus_tag="CTDLC_0198"
                     /note="The substrate-binding component of an ABC-type
                     oligopetide import system contains the type 2 periplasmic
                     binding fold; Region: PBP2_OppA; cd08504"
                     /db_xref="CDD:173869"
     misc_feature    order(222608..222610,223184..223186,223262..223264,
                     223640..223642,223688..223690,223694..223708,
                     223901..223903)
                     /gene="oppA"
                     /locus_tag="CTDLC_0198"
                     /note="peptide binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:173869"
     gene            224152..225093
                     /gene="oppB"
                     /locus_tag="CTDLC_0199"
                     /db_xref="GeneID:12387679"
     CDS             224152..225093
                     /gene="oppB"
                     /locus_tag="CTDLC_0199"
                     /note="OppB"
                     /codon_start=1
                     /transl_table=11
                     /product="Oligopeptide transport system permease protein"
                     /protein_id="YP_005812130.1"
                     /db_xref="GI:385244286"
                     /db_xref="GeneID:12387679"
                     /translation="MLSYIKRRLLFNLLSLWVVVTLTFFIIKTIPGDPFNDENGNILS
                     SETLALLKNRYGLDKPLFTQYLIYLKCLLTLDFGESLIYKDRTVISIIAAALPSSAIL
                     GLESLCLSLFGGITLGILAAFYKKSCGRTIFFSSVIQISVPAFVIGAFLQYVFAIKYS
                     CLPIACWGNFSHTLLPSIALAITPMAFITQLTCASVSANLKKDYVLLAYAKGLSPFKV
                     LIKHILPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPITLG
                     LSVFYGAFFMLTSLCCDLLQAWIDPQIRYSYGKERSK"
     misc_feature    224152..225072
                     /gene="oppB"
                     /locus_tag="CTDLC_0199"
                     /note="ABC-type dipeptide/oligopeptide/nickel transport
                     systems, permease components [Amino acid transport and
                     metabolism / Inorganic ion transport and metabolism];
                     Region: DppB; COG0601"
                     /db_xref="CDD:223674"
     misc_feature    224437..225021
                     /gene="oppB"
                     /locus_tag="CTDLC_0199"
                     /note="Transmembrane subunit (TM) found in Periplasmic
                     Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
                     transporters which generally bind type 2 PBPs. These types
                     of transporters consist of a PBP, two TMs, and two
                     cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
                     cd06261"
                     /db_xref="CDD:119394"
     misc_feature    order(224485..224490,224497..224502,224515..224517,
                     224545..224556,224560..224589,224596..224601,
                     224605..224607,224698..224703,224707..224709,
                     224713..224715,224722..224727,224731..224733,
                     224743..224748,224755..224757,224806..224808,
                     224848..224853,224860..224862,224881..224892,
                     224899..224904,224929..224934,224971..224976,
                     224983..224988,224992..224997,225004..225009,
                     225016..225021)
                     /gene="oppB"
                     /locus_tag="CTDLC_0199"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(224563..224607,224881..224898)
                     /gene="oppB"
                     /locus_tag="CTDLC_0199"
                     /note="conserved gate region; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(224605..224607,224683..224685,224899..224901,
                     224923..224925,224932..224934,224971..224973)
                     /gene="oppB"
                     /locus_tag="CTDLC_0199"
                     /note="putative PBP binding loops; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(224758..224796,224812..224817,224827..224829)
                     /gene="oppB"
                     /locus_tag="CTDLC_0199"
                     /note="ABC-ATPase subunit interface; other site"
                     /db_xref="CDD:119394"
     gene            225125..225970
                     /gene="oppC"
                     /locus_tag="CTDLC_0200"
                     /db_xref="GeneID:12387680"
     CDS             225125..225970
                     /gene="oppC"
                     /locus_tag="CTDLC_0200"
                     /note="OppC"
                     /codon_start=1
                     /transl_table=11
                     /product="Oligopeptide transport system permease protein"
                     /protein_id="YP_005812131.1"
                     /db_xref="GI:385244287"
                     /db_xref="GeneID:12387680"
                     /translation="MFRSSSSHTWRYIRTNKMLVLGCLTLAVLVLAATFLPYLYPDYE
                     RTFPEHALQSPSKAFPFGTDNLGRCMLARTLQGIRLSLLIAVSATIIDVCLGLLWSTL
                     ALASGKKVADIMSRITEILFSIPRIPVIILLLVIFNHGILPLILAMTITGWIPIARII
                     YGQFLLLENKEFVLSARALQASTFHILRKHLLPNSLGPIISTLIFTIPNAVYTEAFIS
                     FLGLGIQPPYASLGTLVKEGIHSLAYHPWLFFIPSFFMIIVSVSFNCIGEGLRTKLLE
                     ENTLV"
     misc_feature    225125..225946
                     /gene="oppC"
                     /locus_tag="CTDLC_0200"
                     /note="ABC-type dipeptide/oligopeptide/nickel transport
                     systems, permease components [Amino acid transport and
                     metabolism / Inorganic ion transport and metabolism];
                     Region: DppC; COG1173"
                     /db_xref="CDD:224094"
     misc_feature    225131..225292
                     /gene="oppC"
                     /locus_tag="CTDLC_0200"
                     /note="N-terminal TM domain of oligopeptide transport
                     permease C; Region: OppC_N; pfam12911"
                     /db_xref="CDD:257395"
     misc_feature    225356..225802
                     /gene="oppC"
                     /locus_tag="CTDLC_0200"
                     /note="Transmembrane subunit (TM) found in Periplasmic
                     Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC)
                     transporters which generally bind type 2 PBPs. These types
                     of transporters consist of a PBP, two TMs, and two
                     cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2;
                     cd06261"
                     /db_xref="CDD:119394"
     misc_feature    order(225404..225409,225416..225421,225434..225436,
                     225464..225475,225479..225508,225515..225520,
                     225524..225526,225575..225580,225584..225586,
                     225590..225592,225599..225604,225608..225610,
                     225620..225625,225632..225634,225683..225685,
                     225725..225730,225737..225739,225758..225769,
                     225776..225781)
                     /gene="oppC"
                     /locus_tag="CTDLC_0200"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(225482..225526,225758..225775)
                     /gene="oppC"
                     /locus_tag="CTDLC_0200"
                     /note="conserved gate region; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(225524..225526,225560..225562,225776..225778)
                     /gene="oppC"
                     /locus_tag="CTDLC_0200"
                     /note="putative PBP binding loops; other site"
                     /db_xref="CDD:119394"
     misc_feature    order(225635..225673,225689..225694,225704..225706)
                     /gene="oppC"
                     /locus_tag="CTDLC_0200"
                     /note="ABC-ATPase subunit interface; other site"
                     /db_xref="CDD:119394"
     gene            225963..226796
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /db_xref="GeneID:12387681"
     CDS             225963..226796
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /note="OppD protein"
                     /codon_start=1
                     /transl_table=11
                     /product="Oligopeptide transport ATP-binding protein"
                     /protein_id="YP_005812132.1"
                     /db_xref="GI:385244288"
                     /db_xref="GeneID:12387681"
                     /translation="MSEDLLKIDNLVVSVKDSNQRLVNHLSLTIKRCQSMALVGENGS
                     GKTTVSKAVLGFLPDNCYIQSGRILYSSTDITRLSRRQLQTIRGKKIATIFQNAMGTL
                     TPSMRVGAQIVETLRHHFDMSKEEAFSKARELLESVHIESPDRCLQLYPFELSGGMCQ
                     RVSIAIALATNPELIIADEPSTALDSISQAQVLRVLTQIHQNHSTALLLITHNLALVS
                     ELCEEMAIIRYGEIVEQGPVQELLHSPSHPYTQQLIRAIPKIPSPSYLSPKEPLATTA
                     Y"
     misc_feature    225975..226670
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /note="ATP-binding cassette domain of nickel/oligopeptides
                     specific transporters; Region: ABC_NikE_OppD_transporters;
                     cd03257"
                     /db_xref="CDD:213224"
     misc_feature    226026..226730
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /note="nickel import ATP-binding protein NikD; Region:
                     nickel_nikD; TIGR02770"
                     /db_xref="CDD:131817"
     misc_feature    226080..226103
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213224"
     misc_feature    order(226089..226094,226098..226106,226248..226250,
                     226494..226499,226596..226598)
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213224"
     misc_feature    226239..226250
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213224"
     misc_feature    226422..226451
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213224"
     misc_feature    226482..226499
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /note="Walker B; other site"
                     /db_xref="CDD:213224"
     misc_feature    226506..226517
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /note="D-loop; other site"
                     /db_xref="CDD:213224"
     misc_feature    226584..226604
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213224"
     misc_feature    226653..>226751
                     /gene="oppD"
                     /locus_tag="CTDLC_0201"
                     /note="Oligopeptide/dipeptide transporter, C-terminal
                     region; Region: oligo_HPY; cl07097"
                     /db_xref="CDD:263181"
     gene            226811..227554
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /db_xref="GeneID:12387682"
     CDS             226811..227554
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /note="OppF"
                     /codon_start=1
                     /transl_table=11
                     /product="Oligopeptide transport ATP-binding protein"
                     /protein_id="YP_005812133.1"
                     /db_xref="GI:385244289"
                     /db_xref="GeneID:12387682"
                     /translation="MSTLVSIKDLSLTIRKQPILRNVHLEICRGECLTIVGASGSGKT
                     SLALAILGLLPPDAQDSIDFHLPPKTPRTKAVQMIWQDVYSSLNPMMTVQEIIAEPLH
                     IMGGLSKSQQQEEIAHALKLVHLPKSFLSLRPNKLSGGQRQRVAIAKALVCKPELIIC
                     DEPLSALDTMNQKLILDLFQTIKNQYNNTFLFITHDMSAAYTLADKIAVMDRGYLVEI
                     ASKQEIFSSPKHIKTRELLDAIPAFTFSF"
     misc_feature    226814..227551
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /note="ABC-type dipeptide/oligopeptide/nickel transport
                     system, ATPase component [Amino acid transport and
                     metabolism / Inorganic ion transport and metabolism];
                     Region: DppF; COG1124"
                     /db_xref="CDD:224049"
     misc_feature    226820..227467
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /note="ATP-binding cassette domain of nickel/oligopeptides
                     specific transporters; Region: ABC_NikE_OppD_transporters;
                     cd03257"
                     /db_xref="CDD:213224"
     misc_feature    226919..226942
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213224"
     misc_feature    order(226928..226933,226937..226945,227051..227053,
                     227291..227296,227393..227395)
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213224"
     misc_feature    227042..227053
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213224"
     misc_feature    227219..227248
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213224"
     misc_feature    227279..227296
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /note="Walker B; other site"
                     /db_xref="CDD:213224"
     misc_feature    227303..227314
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /note="D-loop; other site"
                     /db_xref="CDD:213224"
     misc_feature    227381..227401
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213224"
     misc_feature    227456..>227539
                     /gene="oppF"
                     /locus_tag="CTDLC_0202"
                     /note="Oligopeptide/dipeptide transporter, C-terminal
                     region; Region: oligo_HPY; cl07097"
                     /db_xref="CDD:263181"
     gene            227768..228616
                     /locus_tag="CTDLC_0203"
                     /db_xref="GeneID:12387683"
     CDS             227768..228616
                     /locus_tag="CTDLC_0203"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812134.1"
                     /db_xref="GI:385244290"
                     /db_xref="GeneID:12387683"
                     /translation="MHSYRVVDRRFLACYDQEIIDYSQIFRTGVTLTMEISHILEDLV
                     YDNGVLPREAIEAAIVKHHQITPYLLKILEEAIDHVSDIIDDDCYQGHLYAMYLLAQF
                     RETRALPLIIKLFSFEQDIPHAIAGDVLTEDLSRILASVCDDVALIQELIETPHVNPY
                     VQAAAISSLVALVGVHKLSRETAIRYFGELLNYRLEKKPSFAWDSLVASICALYPKEL
                     FYPISKAFSAGLIDTSFISMEDVETIIHEESIDSCLKEVLSSTDLINDTLEEMEKWLE
                     RFPFES"
     misc_feature    227867..228613
                     /locus_tag="CTDLC_0203"
                     /note="Protein of unknown function (DUF1186); Region:
                     DUF1186; pfam06685"
                     /db_xref="CDD:253860"
     gene            228646..230061
                     /gene="ybhI"
                     /locus_tag="CTDLC_0204"
                     /db_xref="GeneID:12387684"
     CDS             228646..230061
                     /gene="ybhI"
                     /locus_tag="CTDLC_0204"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate/malate translocator"
                     /protein_id="YP_005812135.1"
                     /db_xref="GI:385244291"
                     /db_xref="GeneID:12387684"
                     /translation="MNKHKRFLSLVLLTFILLGIWFCPHSDLIDSKAWHLFAIFTTTI
                     IGIIVQPAPMGAIVIMGISLLLVTKTLTLDQALSGFHSPITWLVFLSFSIAKGVIKTG
                     LGERVAYFFVKILGKSPLGLSYGLVLTDFLLAPAIPSLTARAGGILFPVVMGLSESFG
                     SSVEKGTEKLLGSFLIKVAYQSSVITSAMFLTAMAGNPIISALASHSGVTLTWAIWAK
                     TAILPGIISLACMPFVLFKLFPPQITSCEEAVATAKTRLKEMGPLNQGERIILLIFSL
                     LISLWTFGDSIGISATTTTFIGLSLLILTNILDWQKDVLSNTTAWETFFWFGALIMMA
                     SFLSAFGFIHFVGDSVIGSVQGLSWKIGFPILFLIYFYSHYLFASNTAHIAAMYPIFL
                     TVSISLGANPMFAALALAFASNLFGGLTHYGSGPAPLYFGSHFVSVQEWWRSGFILSI
                     VNLTIWLGLGSWWWYCLGLIR"
     misc_feature    228655..230055
                     /gene="ybhI"
                     /locus_tag="CTDLC_0204"
                     /note="Sodium:sulfate symporter transmembrane region;
                     Region: Na_sulph_symp; pfam00939"
                     /db_xref="CDD:250243"
     misc_feature    228715..230037
                     /gene="ybhI"
                     /locus_tag="CTDLC_0204"
                     /note="anion transporter; Region: dass; TIGR00785"
                     /db_xref="CDD:233126"
     misc_feature    order(228805..228846,228889..228942,229009..229059,
                     229063..229071,229081..229125,229138..229143,
                     229165..229185,229189..229233,229312..229356,
                     229447..229485,229507..229551,229600..229656,
                     229726..229764,229771..229779,229861..229920,
                     229993..230031)
                     /gene="ybhI"
                     /locus_tag="CTDLC_0204"
                     /note="transmembrane helices; other site"
                     /db_xref="CDD:238344"
     gene            230063..231742
                     /gene="pfkA_1"
                     /locus_tag="CTDLC_0205"
                     /db_xref="GeneID:12387685"
     CDS             230063..231742
                     /gene="pfkA_1"
                     /locus_tag="CTDLC_0205"
                     /EC_number="2.7.1.90"
                     /codon_start=1
                     /transl_table=11
                     /product="Pyrophosphate--fructose 6-phosphate
                     1-phosphotransferase"
                     /protein_id="YP_005812136.1"
                     /db_xref="GI:385244292"
                     /db_xref="GeneID:12387685"
                     /translation="MFEQKLMSSNKHASLCQKTPSLCRELQKAPALLLTEDIRFKALL
                     NERIDSVAELFPCTYNSPYYKFISKSDLSAETSPLKVGVMLSGGPAPGGHNVILGLLH
                     SIKKLHPNSQLLGFIRNGEGLLNNNTVEITDEFIEEFRNSGGFNCIGTGRTNIITEEN
                     KARCLQTANELDLDGLVIIGGDGSNTATAILAEYFAKHQAKTVLVGVPKTIDGDLQHL
                     FLDLTFGFDTATKFYSSIISNISRDALSCKGHYHFIKLMGRSSSHITLECALQTHPNI
                     ALIGEEIAEKSISLETLIHDICETIADRAAMGKYHGVILIPEGVIEFIPEIQSLVKEI
                     ESIPEQENLYQALSLSSQQLLCQFPEDICHQLLYNRDAHGNVYVSKISVDKLLIHLVR
                     QHLETHFRQVPFNAISHFLGYEGRSGTPTHFDNVYSYNLGYGAGVLVFNRCNGYLSTI
                     EGLTSPIEKWRLRALPIVRMLTTKQGKDSKHYPLIKKRLVDIASPVFNKFSLYRKIWA
                     LEDSYRFVGPLQIHSPEDAHSDDFPPLILFLNHNEWQKRCSICLEIPDQDY"
     misc_feature    230081..231700
                     /gene="pfkA_1"
                     /locus_tag="CTDLC_0205"
                     /note="diphosphate--fructose-6-phosphate
                     1-phosphotransferase; Provisional; Region: PRK07085"
                     /db_xref="CDD:235930"
     misc_feature    order(230324..230326,230420..230422,230516..230518,
                     230606..230614,230618..230623,230690..230692,
                     230696..230698,230702..230704,230831..230839,
                     231014..231016,231299..231301,231308..231310)
                     /gene="pfkA_1"
                     /locus_tag="CTDLC_0205"
                     /note="active site"
                     /db_xref="CDD:238216"
     misc_feature    order(230324..230326,230420..230422,230516..230518,
                     230606..230614,230618..230623)
                     /gene="pfkA_1"
                     /locus_tag="CTDLC_0205"
                     /note="ADP/pyrophosphate binding site [chemical binding];
                     other site"
                     /db_xref="CDD:238216"
     misc_feature    order(230354..230356,230366..230368,230459..230461,
                     230474..230476,230483..230485,230726..230728,
                     230762..230764,230774..230776,230783..230785,
                     230870..230875,230879..230881,230987..230989,
                     231335..231340,231350..231352,231371..231373,
                     231416..231418,231566..231568)
                     /gene="pfkA_1"
                     /locus_tag="CTDLC_0205"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238216"
     misc_feature    order(230354..230356,230366..230368,230459..230464,
                     230471..230476,230783..230785,230879..230881,
                     230885..230887,230981..230983,230987..230995)
                     /gene="pfkA_1"
                     /locus_tag="CTDLC_0205"
                     /note="allosteric effector site; other site"
                     /db_xref="CDD:238216"
     misc_feature    order(230690..230692,230696..230698,230702..230704,
                     230810..230812,230831..230839,231014..231016,
                     231281..231283,231299..231301,231308..231310)
                     /gene="pfkA_1"
                     /locus_tag="CTDLC_0205"
                     /note="fructose-1,6-bisphosphate binding site; other site"
                     /db_xref="CDD:238216"
     gene            231691..232599
                     /locus_tag="CTDLC_0206"
                     /db_xref="GeneID:12387686"
     CDS             231691..232599
                     /locus_tag="CTDLC_0206"
                     /codon_start=1
                     /transl_table=11
                     /product="Alpha/beta hydrolase"
                     /protein_id="YP_005812137.1"
                     /db_xref="GI:385244293"
                     /db_xref="GeneID:12387686"
                     /translation="MAKTLFYLFRNPRSGLLTISMDITKELPFIMMQQPHYFPHSKKI
                     FEIPLLDNVTSLGVLHIPHSQEKTFPLVIVLHGLASSKIGTKRSYLHLANQLVQEGIG
                     VLRVDLPGHGDSEGFIHEFSLTDYIQASQKIIQFGLSLPQANHSVALFGSSLGGSLSL
                     LNLPYFPEIQHAAIWTPTIQGALWLEDTMQSMSPSLQLPPDNFSYQGIPLGKKFCSQF
                     IELDTVDALSKITQEVSILYLQGEDDAVVSLRHQALFAKTFTGKASYRIYPKMTHQLC
                     IYSEAFQDLVDWLKHQLLGTPWSYSL"
     misc_feature    231850..232095
                     /locus_tag="CTDLC_0206"
                     /note="Putative lysophospholipase; Region: Hydrolase_4;
                     cl19140"
                     /db_xref="CDD:267493"
     misc_feature    231904..232509
                     /locus_tag="CTDLC_0206"
                     /note="Alpha/beta hydrolase family; Region: Abhydrolase_6;
                     pfam12697"
                     /db_xref="CDD:257231"
     misc_feature    <232381..232560
                     /locus_tag="CTDLC_0206"
                     /note="Prolyl oligopeptidase family; Region: Peptidase_S9;
                     cl19144"
                     /db_xref="CDD:267497"
     gene            232515..234227
                     /gene="pfkA_2"
                     /locus_tag="CTDLC_0207"
                     /db_xref="GeneID:12387687"
     CDS             232515..234227
                     /gene="pfkA_2"
                     /locus_tag="CTDLC_0207"
                     /EC_number="2.7.1.90"
                     /codon_start=1
                     /transl_table=11
                     /product="Pyrophosphate--fructose 6-phosphate
                     1-phosphotransferase"
                     /protein_id="YP_005812138.1"
                     /db_xref="GI:385244294"
                     /db_xref="GeneID:12387687"
                     /translation="MHILRSFSRPCRLAKTSIIGHTMELLSVNKSYFELQRLHYRPDT
                     LSLLNSLCSMHIQEKPSSEPASDLLAKHIPHLCALPDLTLQKDAPSSSEPLRIGVLLS
                     GGQAPGGHNVVIGLFEGLRAFNKETKLFGFIKGPLGLIRGLYKDLDISVIYDYYNAGG
                     FDMLSSSREKIKTKEQKSAILATVKKMKLHGLLIVGGDNSNTDTAMLAEYFIEHNCPT
                     AVIGVPKTIDGDLKNAWIETPLGFHTSCRTYSEMIGNLEKDVLSTRKYHHFVKLMGEQ
                     ASHSTLECGLQTLPNITLIGEEVAVQHASLQSLSLSIAQGLIERFHRGKDYSTILIPE
                     GLIKQIPDTKRLIQELNTLIAEGQFSVHNLDQQLSPMAIETFSSLPENIRDQLLLDRD
                     SYGNIRVSKIAIEELLASLVSKEISKLEPTMSFSPVTHFLGYESRASFPSNFDSNYGL
                     ALGIAASLFLVRGKTGYMVTIGNLAEAYTEWTIAATPLYKMMHLEKRFNQETPVIKTD
                     SVSPDAPMAKYLHKMKKICLLEDSYRFPGPLQYFEEQALVDQRPLTLLWEKGKLSENN
                     ATKF"
     misc_feature    232596..234212
                     /gene="pfkA_2"
                     /locus_tag="CTDLC_0207"
                     /note="diphosphate--fructose-6-phosphate
                     1-phosphotransferase; Provisional; Region: PRK07085"
                     /db_xref="CDD:235930"
     misc_feature    order(232824..232826,232920..232922,233016..233018,
                     233106..233114,233118..233123,233190..233192,
                     233196..233198,233202..233204,233331..233339,
                     233514..233516,233814..233816,233823..233825)
                     /gene="pfkA_2"
                     /locus_tag="CTDLC_0207"
                     /note="active site"
                     /db_xref="CDD:238216"
     misc_feature    order(232824..232826,232920..232922,233016..233018,
                     233106..233114,233118..233123)
                     /gene="pfkA_2"
                     /locus_tag="CTDLC_0207"
                     /note="ADP/pyrophosphate binding site [chemical binding];
                     other site"
                     /db_xref="CDD:238216"
     misc_feature    order(232854..232856,232866..232868,232959..232961,
                     232974..232976,232983..232985,233226..233228,
                     233262..233264,233274..233276,233283..233285,
                     233370..233375,233379..233381,233487..233489,
                     233850..233855,233865..233867,233886..233888,
                     233931..233933,234078..234080)
                     /gene="pfkA_2"
                     /locus_tag="CTDLC_0207"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238216"
     misc_feature    order(232854..232856,232866..232868,232959..232964,
                     232971..232976,233283..233285,233379..233381,
                     233385..233387,233481..233483,233487..233495)
                     /gene="pfkA_2"
                     /locus_tag="CTDLC_0207"
                     /note="allosteric effector site; other site"
                     /db_xref="CDD:238216"
     misc_feature    order(233190..233192,233196..233198,233202..233204,
                     233310..233312,233331..233339,233514..233516,
                     233796..233798,233814..233816,233823..233825)
                     /gene="pfkA_2"
                     /locus_tag="CTDLC_0207"
                     /note="fructose-1,6-bisphosphate binding site; other site"
                     /db_xref="CDD:238216"
     gene            complement(234282..234355)
                     /locus_tag="CTDLC_r033"
                     /db_xref="GeneID:12387688"
     tRNA            complement(234282..234355)
                     /locus_tag="CTDLC_r033"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12387688"
     gene            complement(234374..234446)
                     /locus_tag="CTDLC_r032"
                     /db_xref="GeneID:12387689"
     tRNA            complement(234374..234446)
                     /locus_tag="CTDLC_r032"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12387689"
     gene            complement(234473..235768)
                     /gene="gseA"
                     /locus_tag="CTDLC_0208"
                     /db_xref="GeneID:12387690"
     CDS             complement(234473..235768)
                     /gene="gseA"
                     /locus_tag="CTDLC_0208"
                     /EC_number="2.-.-.-"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic-acid transferase"
                     /protein_id="YP_005812139.1"
                     /db_xref="GI:385244295"
                     /db_xref="GeneID:12387690"
                     /translation="MIRRWLTSRLYDAFLVCAFFVSAPRIFYKVFFHGKYIDSWKIRF
                     GVQKPFVKGEGPLVWFHGASVGEVSLLAPLLNRWREEFPEWRFVVTTCSEAGVHTARR
                     LYESLGATVFVLPLDLSCIIKSVVRKLAPDIVIFSEGDCWLHFLTESKRLGAKAFLIN
                     GKLSEHSCKRFSFLKRLGRNYFAPLDLLILQDELYKQRFMQIGISSDKIHVTGNMKTF
                     IESSLATNRRDFWRAKLQISSQDRLIVLGSMHPKDVEVWAEVVSHFHNSSTKILWVPR
                     HLEKLKEHAKLLEKAGILFGLWSQGASFRQYNSLIMDAMGVLKDIYSAADIAFVGGTF
                     DPSVGGHNLLEPLQKEVPLMFGPYIYSQSVLAEKLREKEAGLSVNKETLLDVVTDLLQ
                     NEKNRQAYIEKGKSFLKQEENSFQQTWEILKSQITCMKI"
     misc_feature    complement(234491..235744)
                     /gene="gseA"
                     /locus_tag="CTDLC_0208"
                     /note="3-deoxy-D-manno-octulosonic-acid transferase [Cell
                     envelope biogenesis, outer membrane]; Region: KdtA;
                     COG1519"
                     /db_xref="CDD:224436"
     misc_feature    complement(235109..235663)
                     /gene="gseA"
                     /locus_tag="CTDLC_0208"
                     /note="3-Deoxy-D-manno-octulosonic-acid transferase
                     (kdotransferase); Region: Glycos_transf_N; pfam04413"
                     /db_xref="CDD:252580"
     gene            complement(235765..238224)
                     /gene="leuS"
                     /locus_tag="CTDLC_0209"
                     /db_xref="GeneID:12387691"
     CDS             complement(235765..238224)
                     /gene="leuS"
                     /locus_tag="CTDLC_0209"
                     /EC_number="6.1.1.4"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl-tRNA synthetase"
                     /protein_id="YP_005812140.1"
                     /db_xref="GI:385244296"
                     /db_xref="GeneID:12387691"
                     /translation="MRYDPGLIEEKWQKFWENEQVFKAEEDETKTKYYVLDMFPYPSG
                     AGLHVGHLIGYTATDIVARYKRAQGFSVLHPMGWDSFGLPAEQYAIRTGTHPRETTEK
                     NIANFKKQLTAMGFSYDESREFATSDPEYYKWTQKLFLILYEKGLAYMADMAVNYCPE
                     LGTVLSNEEIENGFSVDGGYPVERRMLRQWVLRITAFADQLLEGLDELDWPESVKQLQ
                     KNWIGKSSGASVNFATEHGVIEVFTTRPDTLIGVSFLALAPEHPLVDLLTSDEQKAVV
                     AQYIKETQSKSERDRISEMKTKSGVFTGSYAKHPVTHKLIPIWIADYVLIGFGSGAVM
                     GVPAHDERDLLFAEQFNLPVVSVLNKEGVCINSCCEGFHLDGLSGEEAKQYVINFLEE
                     NHLGAAKIAYKLRDWLFSRQRYWGEPIPIIHFEDGSCRPLRDYELPLLPPEIQDYRPE
                     GVGQGPLAKVREWVQVFDTETQRAGKRETHTMPQWAGSCWYYLRFCDAHNSAAPWAKE
                     KEQYWMPVDLYIGGAEHAVLHLLYARFWHQVFYEAGIVSTPEPFKKLVNQGLVLATSY
                     RIPGKGYIYPEIAKEENGKWVAPSGEELDVRQEKMSKSKLNGVDPQILIDEFGADAVR
                     MYAMFSGPLDKNKLWSNQGVAGCRRFLNRFYEMVSSDRVKEDNNFEGLSLAHKLVQRV
                     TDAIEKLSLNTIPSSFMEFINDFVKLAVYPKSAVEMAVRALAPIAPHISEELWVLLGN
                     SPGVQKSGWPSVLPEYLEGQTVTIVVQVNGKLRARLDIMKDASKEEVLALARESASKY
                     LEGCEVKKAIFVPARLVNFVV"
     misc_feature    complement(235768..238224)
                     /gene="leuS"
                     /locus_tag="CTDLC_0209"
                     /note="leucyl-tRNA synthetase; Validated; Region: leuS;
                     PRK00390"
                     /db_xref="CDD:234743"
     misc_feature    complement(236308..238131)
                     /gene="leuS"
                     /locus_tag="CTDLC_0209"
                     /note="catalytic core domain of leucyl-tRNA synthetases;
                     Region: LeuRS_core; cd00812"
                     /db_xref="CDD:173906"
     misc_feature    complement(order(236416..236418,236422..236424,
                     236542..236544,236551..236553,236638..236640,
                     236650..236655,236659..236661,237964..237966,
                     237988..237990,238072..238074,238081..238083,
                     238102..238104,238108..238110))
                     /gene="leuS"
                     /locus_tag="CTDLC_0209"
                     /note="active site"
                     /db_xref="CDD:173906"
     misc_feature    complement(238072..238083)
                     /gene="leuS"
                     /locus_tag="CTDLC_0209"
                     /note="HIGH motif; other site"
                     /db_xref="CDD:173906"
     misc_feature    complement(237052..237570)
                     /gene="leuS"
                     /locus_tag="CTDLC_0209"
                     /note="Leucyl-tRNA synthetase, Domain 2; Region:
                     tRNA-synt_1_2; pfam13603"
                     /db_xref="CDD:257918"
     misc_feature    complement(236413..236427)
                     /gene="leuS"
                     /locus_tag="CTDLC_0209"
                     /note="KMSKS motif; other site"
                     /db_xref="CDD:173906"
     misc_feature    complement(236011..236310)
                     /gene="leuS"
                     /locus_tag="CTDLC_0209"
                     /note="Anticodon-binding domain of bacterial and
                     eukaryotic mitochondrial leucyl tRNA synthetases; Region:
                     Anticodon_Ia_Leu_BEm; cd07958"
                     /db_xref="CDD:153412"
     misc_feature    complement(order(236095..236097,236107..236109,
                     236116..236118,236125..236130,236137..236139,
                     236149..236151,236266..236268,236278..236280,
                     236287..236292,236299..236301))
                     /gene="leuS"
                     /locus_tag="CTDLC_0209"
                     /note="tRNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:153412"
     gene            238238..239689
                     /gene="hemL"
                     /locus_tag="CTDLC_0210"
                     /db_xref="GeneID:12387692"
     CDS             238238..239689
                     /gene="hemL"
                     /locus_tag="CTDLC_0210"
                     /EC_number="5.4.3.8"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="YP_005812141.1"
                     /db_xref="GI:385244297"
                     /db_xref="GeneID:12387692"
                     /translation="MLFLRFSLLTTALHLERNKRQTYTMSEIEIKSSPVCESIIFFLM
                     RSWYTLPFPQSLQRSLLMSHLFSKACQYFPGGVNSPVRACRAVNITPPIVARASKEVF
                     VDSLDKTFIDFCGSWGSLIHGHSHPKICTAIRQGLERGSSYGLTSEQEILFAEEIFSY
                     LGLETNYKIRFMSTGSEATMTAVRLARGITGRPIIIKFLGCYHGHADTFLQEKPFSHT
                     SLETLDLAHPLTLSLPFNDFPLFQTVMNSLGHKVAGVIFEPVCANMGVILPVPGFIEG
                     VIQTCQQTGSFSIMDEVVTGFRVAQGGAAALYHVKPDILVFGKILGGGLPASAVVTPK
                     DIMDHLAPEGKIFQAGTLSGNPLAMIAGKVSVNLCREQGFYTQLATIEQNFLSPIEHM
                     IRTTGIPVTLVRYGSLFSFFFNPNRPNNLADAQLSDIEAFQKFYQSAFSKGVYLSPSP
                     FEASFLSAAHSMESLDYAQTALIESLEQVFSLV"
     misc_feature    238427..239677
                     /gene="hemL"
                     /locus_tag="CTDLC_0210"
                     /note="Glutamate-1-semialdehyde aminotransferase [Coenzyme
                     metabolism]; Region: HemL; COG0001"
                     /db_xref="CDD:223080"
     misc_feature    238430..239665
                     /gene="hemL"
                     /locus_tag="CTDLC_0210"
                     /note="Acetyl ornithine aminotransferase family. This
                     family belongs to pyridoxal phosphate (PLP)-dependent
                     aspartate aminotransferase superfamily (fold I). The major
                     groups in this CD correspond to ornithine
                     aminotransferase, acetylornithine aminotransferase;
                     Region: OAT_like; cd00610"
                     /db_xref="CDD:99735"
     misc_feature    order(238757..238765,238841..238846,238850..238852,
                     239009..239011,239108..239110,239114..239119,
                     239192..239194)
                     /gene="hemL"
                     /locus_tag="CTDLC_0210"
                     /note="inhibitor-cofactor binding pocket; inhibition site"
                     /db_xref="CDD:99735"
     misc_feature    order(238760..238765,238841..238846,239009..239011,
                     239108..239110,239117..239119,239192..239194)
                     /gene="hemL"
                     /locus_tag="CTDLC_0210"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:99735"
     misc_feature    239192..239194
                     /gene="hemL"
                     /locus_tag="CTDLC_0210"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99735"
     gene            complement(239681..240250)
                     /gene="algH"
                     /locus_tag="CTDLC_0211"
                     /db_xref="GeneID:12387693"
     CDS             complement(239681..240250)
                     /gene="algH"
                     /locus_tag="CTDLC_0211"
                     /note="transcriptional regulator"
                     /codon_start=1
                     /transl_table=11
                     /product="AlgH"
                     /protein_id="YP_005812142.1"
                     /db_xref="GI:385244298"
                     /db_xref="GeneID:12387693"
                     /translation="MTKLPYALLDKGSLLVASPDINGGIFSRSVVLVCEHSPNGSFGL
                     ILNKILEIDSPEEIFPLDHFDESKVRFCMGGPLQANQIMLLHTSPDSANSSIEICPSV
                     FLGGDFSFAGEKEGRTRDDKMLLCFGYSGWQGGQLEKEFLERLWFLAPSSQEIIFTDA
                     PERMWSDVLQHLGGRFASLSTIPENLLLN"
     misc_feature    complement(239708..240250)
                     /gene="algH"
                     /locus_tag="CTDLC_0211"
                     /note="Putative transcriptional regulator [Transcription];
                     Region: COG1678"
                     /db_xref="CDD:224592"
     gene            complement(240270..240737)
                     /locus_tag="CTDLC_0212"
                     /db_xref="GeneID:12387694"
     CDS             complement(240270..240737)
                     /locus_tag="CTDLC_0212"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812143.1"
                     /db_xref="GI:385244299"
                     /db_xref="GeneID:12387694"
                     /translation="MSEKKNIMNIDREIISDTSLILINFYKLVSFRNYAGIILGTDEK
                     QFAIYGHASMDVAFKKREDLAAEEERSRPSTHDVLNFVLTSFDLSVVRVVITEYKDNV
                     FYSRLFLEQKRGDRLYIADIDARPSDSIPLAIKYQAPILCVKSIFDEAIPYED"
     misc_feature    complement(240273..240701)
                     /locus_tag="CTDLC_0212"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG1259"
                     /db_xref="CDD:224179"
     gene            complement(240706..241434)
                     /gene="rpiA"
                     /locus_tag="CTDLC_0213"
                     /db_xref="GeneID:12387695"
     CDS             complement(240706..241434)
                     /gene="rpiA"
                     /locus_tag="CTDLC_0213"
                     /EC_number="5.3.1.6"
                     /codon_start=1
                     /transl_table=11
                     /product="Ribose 5-phosphate isomerase"
                     /protein_id="YP_005812144.1"
                     /db_xref="GI:385244300"
                     /db_xref="GeneID:12387695"
                     /translation="MSKQPENSFSSDKFFPIKQKLALEAVALVEPGMCVGLGSGSTAR
                     EFILALGDRVRTERLVITAVASSRISQLLAEAVGIPLSDHSLLQDVDLVVDGADEVDP
                     CLRMIKGGGGALFREKILLQSGKRNVILVDERKLVPTLGKFSLPIEIAPFGCSSVQRI
                     LNKQGYFGEWRETSAGERFITDNGNYIYDVRTPDSYANPEEDMIRLLQIRGIIDVGFV
                     IAKAEVWVGYADGSIVRKKEHNEY"
     misc_feature    complement(240751..241383)
                     /gene="rpiA"
                     /locus_tag="CTDLC_0213"
                     /note="RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
                     subfamily; RPI catalyzes the reversible conversion of
                     ribose-5-phosphate to ribulose 5-phosphate, the first step
                     of the non-oxidative branch of the pentose phosphate
                     pathway. This reaction leads to the...; Region: RPI_A;
                     cd01398"
                     /db_xref="CDD:238692"
     misc_feature    complement(order(240877..240879,240889..240891,
                     240895..240897,240919..240924,241102..241107,
                     241186..241188,241192..241194,241219..241224,
                     241231..241233,241318..241320))
                     /gene="rpiA"
                     /locus_tag="CTDLC_0213"
                     /note="tetramer (dimer of dimers) interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:238692"
     misc_feature    complement(order(241030..241032,241084..241086,
                     241102..241113,241141..241143,241147..241152,
                     241309..241314,241318..241320))
                     /gene="rpiA"
                     /locus_tag="CTDLC_0213"
                     /note="active site"
                     /db_xref="CDD:238692"
     misc_feature    complement(order(240796..240798,240811..240816,
                     240958..240960,240967..240975,240979..240984,
                     241066..241068,241087..241089,241171..241173,
                     241183..241185))
                     /gene="rpiA"
                     /locus_tag="CTDLC_0213"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238692"
     gene            complement(241529..243172)
                     /locus_tag="CTDLC_0214"
                     /db_xref="GeneID:12387696"
     CDS             complement(241529..243172)
                     /locus_tag="CTDLC_0214"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane spanning protein"
                     /protein_id="YP_005812145.1"
                     /db_xref="GI:385244301"
                     /db_xref="GeneID:12387696"
                     /translation="MRTDSLFNPPDSTRGVFQFLETQCDRAVARSRQSQFIGLVSAVA
                     AAALLLLLVVALSVPGFPVAASIVVGVLFALSIVALTASFLVYIANAKLVAIRIKFLS
                     SGLQDHFSESSILGTLRKGRGASIPLISGQADDPLPNRIGIKKSTEMRVLQKGIGTDY
                     KKYKQHLDRVNNDFTFVCEGISALIPTEKDAPFPIEPSHLAGVFLVSFSPDKNPILKI
                     TRHAEKMLQPPQGGFPNGLVWLCGALSDPKKFAAPFLSLIEKTHQGILVSKDLKDNKE
                     RKLALEASLLSLNIFFSGWCLGNPEYNQYITTAVAEKYRDVSVRNCIYDFLDTGNVIS
                     ALALASSYSQDSAWAAGLQKVLREEDKKTKKKSREEVSCLYRDIDPGCCLRALPKRFE
                     SKSSGSQGSPKEQLSSLLKALDQKIPSGILGLIAKASSADLKADFAGMLEVIKQLQAL
                     FDSYPPLCEDNILLWLSASLEQVGLQKKLRTFLPSSEKKLLERVLSTFLLGLYTRGVF
                     SVGQVNQLATICNTQDSTEFCQRVSDLSLIKRALPALFG"
     gene            243476..244522
                     /gene="dhnA"
                     /locus_tag="CTDLC_0215"
                     /db_xref="GeneID:12387697"
     CDS             243476..244522
                     /gene="dhnA"
                     /locus_tag="CTDLC_0215"
                     /EC_number="4.1.2.13"
                     /codon_start=1
                     /transl_table=11
                     /product="Fructose-bisphosphate aldolase"
                     /protein_id="YP_005812146.1"
                     /db_xref="GI:385244302"
                     /db_xref="GeneID:12387697"
                     /translation="MTTIFDLLGKDADYLLNHKCVIKKEALTLPSGDLVSRVFAESDR
                     NNRVLRSLQQMFSCGRLGGTGYLSILPVDQGVEHTAGASFAKNPMYFDPENIVRLAME
                     AGCSAVASSYGVLSILARRYAHKIPFLLKLNHNELLSYPTTYHQIFFSQVEDAYNMGA
                     VAVGATIYFGSESSSEEIVAVAEAFARARELGLATVLWCYLRNPHFVVNNVDYHTAAD
                     LTGQADHLGATLGADIVKQKLPTLQGGFKTINFSKTDDLVYSELSSNHPIDLCRYQVL
                     NSYCGKVGLINSGGPSGQDDFAEAVKTAVINKRAGGMGLILGRKAFQRPFSEGVRLLN
                     LIQDIYLDPTISIS"
     misc_feature    243674..244498
                     /gene="dhnA"
                     /locus_tag="CTDLC_0215"
                     /note="Class I fructose-1,6-bisphosphate (FBP) aldolases
                     of the archaeal type (DhnA homologs); Region: DhnA;
                     cd00958"
                     /db_xref="CDD:188645"
     misc_feature    order(244229..244231,244322..244324,244391..244399,
                     244463..244471)
                     /gene="dhnA"
                     /locus_tag="CTDLC_0215"
                     /note="putative active site; other site"
                     /db_xref="CDD:188645"
     misc_feature    244229..244231
                     /gene="dhnA"
                     /locus_tag="CTDLC_0215"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:188645"
     gene            244536..245936
                     /gene="xasA"
                     /locus_tag="CTDLC_0216"
                     /db_xref="GeneID:12387698"
     CDS             244536..245936
                     /gene="xasA"
                     /locus_tag="CTDLC_0216"
                     /codon_start=1
                     /transl_table=11
                     /product="Glutamate/gamma-aminobutyrate antiporter"
                     /protein_id="YP_005812147.1"
                     /db_xref="GI:385244303"
                     /db_xref="GeneID:12387698"
                     /translation="MHHRKSSTSLGTFTVGMLSLAVVISLRNLPLTAKHGLSTLFFYA
                     VAVACFMIPYALIAAELASFKPQGIYVWTRDALGKRWGFFAIWMQWFHNMTWYPAMLA
                     FIASTLVYQISPDLANNRLYLSSVILLGFWGLTFFNVLGIGTSALFSSICAIVGTLIP
                     GAILVAFAAYWIQGGNPIAINFSWSELLPDFSSPSSFVLLSGMLLALCGLEANANLAS
                     DMEDPKRNYPKAVFIGAVSTLAILVLGSLAIAIVIPKEEISLVSGLIRAFSLFFEKYN
                     LSWMTGIIVAMTIAGSLGELNAWMFAGTKGLFISTQNDCLPKIFKKTNSRDVPTNLML
                     FQAIVVTLFTFIFVYVDSADLAYWILSALSAQMYLVMYICLFIVGPVLRIKEPKAQRL
                     YSVPGKLVGMCVLSTLGILSCLFALGISFLPPQEVVSFSTMGGNFGYTALLLLAFVIN
                     CCIPFGMYYSHKKLIK"
     misc_feature    244563..245921
                     /gene="xasA"
                     /locus_tag="CTDLC_0216"
                     /note="putative glutamate/gamma-aminobutyrate antiporter;
                     Region: put_Glu_GABA_T; TIGR03813"
                     /db_xref="CDD:163525"
     gene            245943..246794
                     /gene="ttcA"
                     /locus_tag="CTDLC_0217"
                     /db_xref="GeneID:12387699"
     CDS             245943..246794
                     /gene="ttcA"
                     /locus_tag="CTDLC_0217"
                     /note="tRNA s2C32 biosynthesis protein"
                     /codon_start=1
                     /transl_table=11
                     /product="TtcA"
                     /protein_id="YP_005812148.1"
                     /db_xref="GI:385244304"
                     /db_xref="GeneID:12387699"
                     /translation="MHRKGLCKEALFFLRLTWISNSQIFKISLMFTLQCSPPWTKLGK
                     RVESLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAISGRGFPELTIHAIHIG
                     GKYSCGAAVSGNYLSSICDKIQVPLISIPSPYETENPECYTCSRIRRRLLFDTAKAVG
                     ATAVAFGHHRDDVVQTTLMNLLHKAEFAGMLPIVDMVNFGITILRPLIFIPEDLIRKF
                     AKESGFARITCRCPVISLRTKTEEALKTLETIFPQARHNIALAVRETGLSKANRVEQY
                     DSLLTEA"
     misc_feature    246063..246788
                     /gene="ttcA"
                     /locus_tag="CTDLC_0217"
                     /note="tRNA(Ile)-lysidine synthase MesJ [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     MesJ; COG0037"
                     /db_xref="CDD:223115"
     misc_feature    246135..246638
                     /gene="ttcA"
                     /locus_tag="CTDLC_0217"
                     /note="This is a subfamily of Adenine nucleotide alpha
                     hydrolases superfamily.Adeninosine nucleotide alpha
                     hydrolases superfamily  includes N type ATP PPases and ATP
                     sulphurylases. It forms a apha/beta/apha fold which  binds
                     to Adenosine group.  This subfamily; Region:
                     Alpha_ANH_like_II; cd01993"
                     /db_xref="CDD:238951"
     misc_feature    order(246147..246155,246159..246170,246240..246242,
                     246246..246248)
                     /gene="ttcA"
                     /locus_tag="CTDLC_0217"
                     /note="Ligand Binding Site [chemical binding]; other site"
                     /db_xref="CDD:238951"
     gene            246895..247776
                     /gene="surE"
                     /locus_tag="CTDLC_0218"
                     /db_xref="GeneID:12387700"
     CDS             246895..247776
                     /gene="surE"
                     /locus_tag="CTDLC_0218"
                     /EC_number="3.1.3.2"
                     /note="acid phosphatase"
                     /codon_start=1
                     /transl_table=11
                     /product="SurE"
                     /protein_id="YP_005812149.1"
                     /db_xref="GI:385244305"
                     /db_xref="GeneID:12387700"
                     /translation="MRNEKYKRGLMTETRRLRILITNDDGIKAKGISLLISLLREADF
                     ADLYVVAPLEEQSGRSMAFSLVEPTALEPFDYPQRVQEAWAVTGTPVDCVKLAIGELF
                     KENALDLILSGINNGKNSGRCLYYSATVGAIREANLHGIPAIALSQSENIAFFQKAHM
                     ASLIRSLCEFTVAYKHTDPLGLNVNFPASTDDSPWKGIRFTLSGNEFLFGIPRLVRTE
                     GNRRYYTLYDMRDKVSEEFSEEYLALANNYISAAPLVSKNTPRATLSEEELAFLKDSF
                     EQSVLWKASLNLEEDLA"
     misc_feature    246943..247692
                     /gene="surE"
                     /locus_tag="CTDLC_0218"
                     /note="Predicted acid phosphatase [General function
                     prediction only]; Region: SurE; COG0496"
                     /db_xref="CDD:223570"
     gene            247888..248796
                     /gene="ubiA"
                     /locus_tag="CTDLC_0219"
                     /db_xref="GeneID:12387701"
     CDS             247888..248796
                     /gene="ubiA"
                     /locus_tag="CTDLC_0219"
                     /EC_number="2.5.1.-"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="YP_005812150.1"
                     /db_xref="GI:385244306"
                     /db_xref="GeneID:12387701"
                     /translation="MSKIVLIQQLIKCKYALFAALFLASSTLFCFSLPCTPFSLFSLG
                     SIKTISLGGSAFFIARALGMIVNQVVDCAIDKRNPRTQSRVLPTELLSIKHSMLLLTL
                     CLILFLSTCWLFNPLCFSLAVLSTLIMIIYPYTKRFTFLCHWILGLVYYLAILMNFFA
                     IIETPSFSLFCMSSLLGISFGMIIAANDIIYALQDVEFDQKEGLFSIPARFGTKQAIT
                     IASANLIASAIAYLLIGYFVPNKTIFYLCSLVPLTGILRTIKHYSLIDPRAKSTLQQN
                     FFLGNLSLGIAFFANMIGLFLLRGIL"
     misc_feature    247915..248766
                     /gene="ubiA"
                     /locus_tag="CTDLC_0219"
                     /note="4-Hydroxybenzoate polyprenyltransferase; Region:
                     PT_UbiA_COQ2; cd13959"
                     /db_xref="CDD:260122"
     misc_feature    order(248098..248100,248110..248112,248470..248472,
                     248482..248484)
                     /gene="ubiA"
                     /locus_tag="CTDLC_0219"
                     /note="putative active site [active]"
                     /db_xref="CDD:260122"
     gene            248793..249371
                     /gene="ubiX"
                     /locus_tag="CTDLC_0220"
                     /db_xref="GeneID:12387702"
     CDS             248793..249371
                     /gene="ubiX"
                     /locus_tag="CTDLC_0220"
                     /EC_number="4.1.1.-"
                     /note="UbiX"
                     /codon_start=1
                     /transl_table=11
                     /product="3-polyprenyl-4-hydroxybenzoate decarboxylase"
                     /protein_id="YP_005812151.1"
                     /db_xref="GI:385244307"
                     /db_xref="GeneID:12387702"
                     /translation="MKRYVVGISGASGIVLAVTLVSELARLGHHIDVIISPSAQKTLY
                     YELDTKSFLSTIPQNFHNQIVLHHISSIESSVSSGSNTIDATIIVPCSVATVAAISCG
                     LADNLLRRVADVALKEKRPLILVPREAPLSAIHLENLLKLAQNGAVILPPMPIWYFKP
                     QTAEDIANDIVGKILAILQLDSPLIKRWENPR"
     misc_feature    248793..249368
                     /gene="ubiX"
                     /locus_tag="CTDLC_0220"
                     /note="aromatic acid decarboxylase; Validated; Region:
                     PRK05920"
                     /db_xref="CDD:180312"
     gene            complement(249368..250264)
                     /gene="yqfU"
                     /locus_tag="CTDLC_0221"
                     /db_xref="GeneID:12387703"
     CDS             complement(249368..250264)
                     /gene="yqfU"
                     /locus_tag="CTDLC_0221"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane spanning protein"
                     /protein_id="YP_005812152.1"
                     /db_xref="GI:385244308"
                     /db_xref="GeneID:12387703"
                     /translation="MAHTIRFTKFSFPLYFSKTLSWFIIGGFLAACGVHMILAPNDLI
                     DGGIVGLSMIAAHSFGHQFLPVFLVLFNLPFIILAYKRIGKYFVVQMITAVIIFSCWL
                     WLIEVLPEWLGIQPFIFDGSEIETIVLGGVVLGAGGGLIIRHGGATDGTEILGIIVNK
                     KRGYTVGQVILFVNFFIFSLGGIVYRNWHTAFMSLLTYAVAIKVMDMVILGFEDTKSV
                     TIITSSPRKLGNILMETLGVGLTYLHAEGGFSGEPRSLLYIVVERLQLSQLKEIVHRE
                     DPSAFIAIENLHEVINEKRTSH"
     misc_feature    complement(249377..250252)
                     /gene="yqfU"
                     /locus_tag="CTDLC_0221"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG1284"
                     /db_xref="CDD:224203"
     misc_feature    complement(249968..250198)
                     /gene="yqfU"
                     /locus_tag="CTDLC_0221"
                     /note="Uncharacterized BCR, YitT family COG1284; Region:
                     DUF161; pfam02588"
                     /db_xref="CDD:251396"
     misc_feature    complement(249392..249550)
                     /gene="yqfU"
                     /locus_tag="CTDLC_0221"
                     /note="Uncharacterized protein conserved in bacteria
                     (DUF2179); Region: DUF2179; pfam10035"
                     /db_xref="CDD:255714"
     gene            complement(250288..250361)
                     /locus_tag="CTDLC_r031"
                     /db_xref="GeneID:12387704"
     tRNA            complement(250288..250361)
                     /locus_tag="CTDLC_r031"
                     /product="tRNA-Asp"
                     /db_xref="GeneID:12387704"
     gene            complement(250369..250441)
                     /locus_tag="CTDLC_r030"
                     /db_xref="GeneID:12387705"
     tRNA            complement(250369..250441)
                     /locus_tag="CTDLC_r030"
                     /product="tRNA-Val"
                     /db_xref="GeneID:12387705"
     gene            complement(250720..251121)
                     /locus_tag="CTDLC_0222"
                     /db_xref="GeneID:12387706"
     CDS             complement(250720..251121)
                     /locus_tag="CTDLC_0222"
                     /codon_start=1
                     /transl_table=11
                     /product="LAGLI-DADG endonuclease"
                     /protein_id="YP_005812153.1"
                     /db_xref="GI:385244309"
                     /db_xref="GeneID:12387706"
                     /translation="MRSDMRCCCVRTNYEEVRSSSTGDQVVSAVKERKCDSSLCRKIA
                     SVAFTLIGALLLGIGMVLSFALLGSSAGLIGVGVILSALGAVCLSLGLCKLFLRMKRV
                     SLDKAEQKMLEDQVELLRQENQELKALVYSN"
     misc_feature    complement(<250738..251010)
                     /locus_tag="CTDLC_0222"
                     /note="IncA protein; Region: IncA; pfam04156"
                     /db_xref="CDD:252417"
     gene            complement(251251..252063)
                     /locus_tag="CTDLC_0223"
                     /db_xref="GeneID:12387707"
     CDS             complement(251251..252063)
                     /locus_tag="CTDLC_0223"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812154.1"
                     /db_xref="GI:385244310"
                     /db_xref="GeneID:12387707"
                     /translation="MVSLALGTSNGVEANNGINDLSPAPEAKKTGSGLCYKISAVAAL
                     VLGLLAAAGGAVVLALFCTFAPPLFFYAGVALVALGAVILGVGVSNTCSCCLRSRKIE
                     AHKQLILQQKEEISQLEQQLAKALKELNTKYPASLLERRDLRENLKAWQSCCLNLEKE
                     VRDLLTKLGGYQERLKVLPAKEKQIEELKAMLEHYSRICHERGELINLLKTANKKLSK
                     ESEKLLFNYKAHRDVCLGEKVLVKSVNLIDLDPKSDSSDGDDDDGFNYGSRV"
     misc_feature    complement(251434..251874)
                     /locus_tag="CTDLC_0223"
                     /note="IncA protein; Region: IncA; pfam04156"
                     /db_xref="CDD:252417"
     misc_feature    complement(<251401..251721)
                     /locus_tag="CTDLC_0223"
                     /note="Orbivirus outer capsid protein VP5; Region:
                     Orbi_VP5; pfam00901"
                     /db_xref="CDD:189762"
     gene            complement(252454..252897)
                     /locus_tag="CTDLC_0224"
                     /db_xref="GeneID:12387708"
     CDS             complement(252454..252897)
                     /locus_tag="CTDLC_0224"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812155.1"
                     /db_xref="GI:385244311"
                     /db_xref="GeneID:12387708"
                     /translation="MSFVGDSVPLRSYMPEAPLVDSASKARVSCCSERIAVLALGILS
                     ILFIVTGAALFIGAGWTTLPMIDVVVTLVVFGSVMLGAVLTRISSYGGEPKKVSLDRF
                     VLENERQGFLDKQRLADISKEEIALAKQQIEEEKEAILHSIFPND"
     misc_feature    complement(<252487..252810)
                     /locus_tag="CTDLC_0224"
                     /note="IncA protein; Region: IncA; pfam04156"
                     /db_xref="CDD:252417"
     gene            complement(252988..253356)
                     /locus_tag="CTDLC_0225"
                     /db_xref="GeneID:12387709"
     CDS             complement(252988..253356)
                     /locus_tag="CTDLC_0225"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812156.1"
                     /db_xref="GI:385244312"
                     /db_xref="GeneID:12387709"
                     /translation="MANNSFIHRSKTYQLFVVVLTSLLAALGGVFLCLGGVYSSLVLG
                     VVGGAAIIGSCIGAFGLVSYLLSVIRNSDQLLQEAKESARKISSHYRVLETQKNREIG
                     LLEERVNMLDGFYAKFHGWD"
     gene            complement(253455..253985)
                     /locus_tag="CTDLC_0226"
                     /db_xref="GeneID:12387710"
     CDS             complement(253455..253985)
                     /locus_tag="CTDLC_0226"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812157.1"
                     /db_xref="GI:385244313"
                     /db_xref="GeneID:12387710"
                     /translation="MLAFFLRNRGAMFNISFCCNSSKPLRADHTETIGAQTTTSRKEQ
                     LLAIGALVLGVLAVLGGALLLLFSGSVVSLFAPILSLLAMTLGSACIGGSLVYMYGFS
                     LKPTRLPSESSELAPEAVTPGLVLSYQELLYEAEEDLKEVEGLLAQKSKDLELAQKKI
                     EQLQSGLKCVLEESLI"
     gene            complement(254101..254502)
                     /locus_tag="CTDLC_0227"
                     /db_xref="GeneID:12387711"
     CDS             complement(254101..254502)
                     /locus_tag="CTDLC_0227"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812158.1"
                     /db_xref="GI:385244314"
                     /db_xref="GeneID:12387711"
                     /translation="MSYLFCSSCAPTLESPAELCLYKTHIYCKRRGNIEFAVSLGIFA
                     ILSCVALLCLLCGGSSLVFAGLGIGAIMIGSVALGVGLTFLYWSCSRGLQNRIRTNIL
                     ASSDSSSLFSSKSDFSLEFELNEADVTISVS"
     gene            complement(254773..255363)
                     /locus_tag="CTDLC_0228"
                     /db_xref="GeneID:12387712"
     CDS             complement(254773..255363)
                     /locus_tag="CTDLC_0228"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812159.1"
                     /db_xref="GI:385244315"
                     /db_xref="GeneID:12387712"
                     /translation="MSTTISGDASSLPLPTASCVEIKSTSSSTKGNTCSKILDIALAI
                     VGALVVVAGVLALVLCASNVIFTAIGIAALIIGSACVGAGISRLMCRSSYASLEAKNV
                     LAEQRLRNLSEEKDALVSVSFINKMFLRGLTDDLQALEAKAIEVEIDCLDRLEKNEQA
                     LLSDVRLVLSSYTRWLDSAEKEKAALKASIDANQAS"
     misc_feature    complement(<254854..255174)
                     /locus_tag="CTDLC_0228"
                     /note="IncA protein; Region: IncA; pfam04156"
                     /db_xref="CDD:252417"
     gene            complement(255513..256160)
                     /locus_tag="CTDLC_0229"
                     /db_xref="GeneID:12387713"
     CDS             complement(255513..256160)
                     /locus_tag="CTDLC_0229"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812160.1"
                     /db_xref="GI:385244316"
                     /db_xref="GeneID:12387713"
                     /translation="MSCSNINSGAPATLFAKGAAAISSRVDTMRQMCSARVGAKTCGI
                     ALTIIGLLVATAGVVIAAVGIGTPASLAAGMILVMVGSLLLGLGLARARSRRVEVERH
                     LEVVSMQIEGLKEEYKALFEVYQVNLEARRAVSKHCQDLEEQILDLCKRYAETVCSIE
                     EDAEQEIRHQTEGFKQRLQQSQNTCSQLTAELCKLRSENKTLSERLQVQASRRKK"
     misc_feature    complement(255543..256043)
                     /locus_tag="CTDLC_0229"
                     /note="IncA protein; Region: IncA; pfam04156"
                     /db_xref="CDD:252417"
     gene            256386..257633
                     /locus_tag="CTDLC_0230"
                     /db_xref="GeneID:12387714"
     CDS             256386..257633
                     /locus_tag="CTDLC_0230"
                     /codon_start=1
                     /transl_table=11
                     /product="Proton/sodium-glutamate symport protein"
                     /protein_id="YP_005812161.1"
                     /db_xref="GI:385244317"
                     /db_xref="GeneID:12387714"
                     /translation="MRSPLKLLFSPEKSNMMLGLSILLGLLLGWPHLSFVSLSAEVIS
                     AVFLKLLRLLSLPLVFFAIGSTITSINNLKSMVSVVRSSLYYTLLTTLISAAMALVLF
                     IFIKPSVPLSGFNAATETNATGYLSVLSKTIPGNILEPFLESNVIAAAFLSALLATFS
                     LSLPENERLFVRNAFNTLFSLLLSISKGILKMLLLATFAFSLLFVREMRTGNLELSSF
                     GEYLFCIVTANCLQGFLVLPLLLKMKGISPLRTFKLMSRPLATAFFSKSSAATLPLTM
                     EVAEENLHIRPTISRFVFPLCSVINMNACAAFILTTVLFVGVSNGIVFSPLSLISWVF
                     IATLAAVGNAGVPMGCYFLTSSLLASMNVPLCLLGLILPAYALLDMLETLINVWSDCC
                     VVSVINKKFSETEDLPPCSYTNE"
     misc_feature    256560..257603
                     /locus_tag="CTDLC_0230"
                     /note="Na+/H+-dicarboxylate symporters [Energy production
                     and conversion]; Region: GltP; COG1301"
                     /db_xref="CDD:224220"
     gene            257817..259289
                     /locus_tag="CTDLC_0231"
                     /db_xref="GeneID:12387715"
     CDS             257817..259289
                     /locus_tag="CTDLC_0231"
                     /codon_start=1
                     /transl_table=11
                     /product="Sodium-dependent amino acid transporter"
                     /protein_id="YP_005812162.1"
                     /db_xref="GI:385244318"
                     /db_xref="GeneID:12387715"
                     /translation="MNKKNTVFSSRLGFILSMMGVAIGAGNIWRFPRMVAQNGGGTFI
                     LLWLLFLIIWSIPLIIVELSIGKLTRKAPIGALIRTAGPKSAWLGGFIVLVATCILGY
                     YSNIVGWGFSYFFYSLSGKIVPGNHFPQLWAHHCQSWMPLSCHCLALFLAYCIIRKGI
                     VNGIETCNKILIPFFFICALVLLARAVSLPHAWEGIRLLFVFNKASLCDYKVWIEALT
                     QNAWDTGAGWGLLLVYAGFASKQTSLVTNGAITAITNNFISFLMAVIVFSACASLDST
                     EMLGLREGVGASNIGMAFIYLPELFTRLPHAHILSTFFSAIFFLAFSMAALSSMISML
                     FLLSQTLTEFGIKKHIAESSATIAAFLIGVPSALNLQFFDNQDIVWGIALILNGMIFI
                     YSALSYGIKRLRQDVINSVPGDYKLKTYFDILVKFLLPLEGVLLLAWYFYEGAMLPQA
                     YWWNPFVSYNISSLLMQWGLGGGVLFLLNRKLYTKFYLNN"
     misc_feature    257817..259157
                     /locus_tag="CTDLC_0231"
                     /note="Na+-dependent transporters of the SNF family
                     [General function prediction only]; Region: COG0733"
                     /db_xref="CDD:223805"
     gene            259394..259741
                     /gene="incB"
                     /locus_tag="CTDLC_0232"
                     /db_xref="GeneID:12387716"
     CDS             259394..259741
                     /gene="incB"
                     /locus_tag="CTDLC_0232"
                     /codon_start=1
                     /transl_table=11
                     /product="Inclusion membrane protein B"
                     /protein_id="YP_005812163.1"
                     /db_xref="GI:385244319"
                     /db_xref="GeneID:12387716"
                     /translation="MVHSVYNSLAPEGFSQVSIQPSQIPTSKKVMIAIMTLFALTAIA
                     AIVLSIVTVCGGFPFLLAALNTVTIGACVSLPVFTCIATTLLLLCLRNIELLARPQVF
                     TLSTQFSPTKPQE"
     gene            259818..260354
                     /gene="incC"
                     /locus_tag="CTDLC_0233"
                     /db_xref="GeneID:12387717"
     CDS             259818..260354
                     /gene="incC"
                     /locus_tag="CTDLC_0233"
                     /codon_start=1
                     /transl_table=11
                     /product="Inclusion membrane protein C"
                     /protein_id="YP_005812164.1"
                     /db_xref="GI:385244320"
                     /db_xref="GeneID:12387717"
                     /translation="MTYSISDIAHKSDISNPTSPAPSRKRGSFPPQSPSAVGSLEGAN
                     FSTWGPGPFFTVPVYPQQLAAMQNNLFTLQTEVSALKKKLVQSSQTRGSLGLGPQFLA
                     ACLVAATILAVAVIVLASLGLGGVLPFVLVCLAGSTNAIWAIVSASITTLICCVSIAC
                     IFLAKCDKGSDPQTLYVS"
     misc_feature    260103..>260246
                     /gene="incC"
                     /locus_tag="CTDLC_0233"
                     /note="Integral membrane protein (DUF2244); Region:
                     DUF2244; cl02302"
                     /db_xref="CDD:261237"
     gene            260385..263198
                     /locus_tag="CTDLC_0234"
                     /db_xref="GeneID:12387718"
     CDS             260385..263198
                     /locus_tag="CTDLC_0234"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP,ATP carrier protein"
                     /protein_id="YP_005812165.1"
                     /db_xref="GI:385244321"
                     /db_xref="GeneID:12387718"
                     /translation="MKLTIKSISMLLFYKGSGSLRALRFLLSLRRGEEKRALLFLLLG
                     LIWSVACYGSLALGESLFLEEIGAEKLPFAYLGASFFLCFISCLILYNLSRKRVSPKA
                     LFLSFISCVLICNLYLFWHLAIHKGVSGTPTFLYRILIWGLTILCYANFWGFIDQFFN
                     IQDAKRHFCIFNAITFCGDFLGARIVNQIQYLGAELILLAFIVVITFIFPLVHYISSS
                     LKELSEDHNLFLDTGYPPSTKQTLKLCLKDKYTFYLVSFYFLMQLLVVFTEFNYLKIF
                     DAQFGNAETCELTENFTKYSSWISLGNMFFALFAYSRVITRFGINNIILFAPICFFSL
                     FCCWSIKTSVFIATMGMIAREGLAYALDDNNLQLLIYGIPNKIRNQVRIAIESFVEPA
                     GMFICALLCLFIPHQYVLCIIISAVCILLAILLRTHYSKAILRNLSLESIHRRRSIRE
                     WFADMNDTEKRQAEILLLTHLKNPQERNQMFAFQHLLNLKNRAVLPNLLLHMNKLGLS
                     GKLKTLNMLKNSVWAKDFLTLELLKRWSSLPQHPTIAAALHLYFVEHDLLHVSDIADD
                     LYDQSGDRLFAAVLIVRKHKPSGEYQALAEKHLSEILESEDPELIIKGLSILALERSP
                     SNFPIILPFLTHPNEQVFLQACLSLETCADKQYAQYGRTVLNTLKKTKDTQAAQALLN
                     TLAALLDASLVYEFVLASVQLKNVLRKLAETILASLPKECIPILIEMVADHSLHNSCR
                     IMAAKALSHIDSRQLKRLALKILKSKAAKTLFYDYHKNFIQKRYPRYDLHLLIESLEA
                     NYQAEVNFMLAFLAIVGSSDYADVLIRSLTGKNLKARAQALESLEKDCENHLFTLVTP
                     FVYRDKHTSDEKYYMKKGVEPLAIEELLNRLEQTPFLFSKLIAQQLKEELSLCDAEFS
                     SALQSFAKKQKTSILSREYITSS"
     misc_feature    260520..261662
                     /locus_tag="CTDLC_0234"
                     /note="The Major Facilitator Superfamily (MFS) is a large
                     and diverse group of secondary transporters that includes
                     uniporters, symporters, and antiporters. MFS proteins
                     facilitate the transport across cytoplasmic or internal
                     membranes of a variety of...; Region: MFS; cd06174"
                     /db_xref="CDD:119392"
     misc_feature    order(260538..260540,260547..260555,260559..260564,
                     260613..260615,260622..260627,260631..260633,
                     260643..260648,260652..260657,260817..260819,
                     260826..260831,260838..260843,260850..260852,
                     260886..260891,260898..260903,260919..260921,
                     261171..261173,261180..261185,261192..261197,
                     261216..261218,261258..261260,261270..261272,
                     261282..261284,261291..261293,261303..261305,
                     261450..261452,261459..261464,261471..261473,
                     261483..261488,261495..261497,261525..261527,
                     261531..261533,261540..261545,261552..261557,
                     261564..261566)
                     /locus_tag="CTDLC_0234"
                     /note="putative substrate translocation pore; other site"
                     /db_xref="CDD:119392"
     gene            263227..263640
                     /locus_tag="CTDLC_0235"
                     /db_xref="GeneID:12387719"
     CDS             263227..263640
                     /locus_tag="CTDLC_0235"
                     /codon_start=1
                     /transl_table=11
                     /product="Transcription regulator, crp family"
                     /protein_id="YP_005812166.1"
                     /db_xref="GI:385244322"
                     /db_xref="GeneID:12387719"
                     /translation="MNLIDKAFLLKKTFLFASLDMDVLLSIADKSEVMLFKAGSEIFS
                     EGQPSFSLYVIAEGCVKIFAKEPAINVRLKPLDCFGEESFFNNKVREYSAEAITLVKT
                     LILNKGQFLSIIEECHSVSLVLLESYSKQIVFRDQ"
     misc_feature    263251..>263622
                     /locus_tag="CTDLC_0235"
                     /note="cAMP-binding proteins - catabolite gene activator
                     and regulatory subunit of cAMP-dependent protein kinases
                     [Signal transduction mechanisms]; Region: Crp; COG0664"
                     /db_xref="CDD:223736"
     misc_feature    263269..263601
                     /locus_tag="CTDLC_0235"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; Region: CAP_ED;
                     cd00038"
                     /db_xref="CDD:237999"
     misc_feature    order(263464..263469,263494..263502)
                     /locus_tag="CTDLC_0235"
                     /note="ligand binding site [chemical binding]; other site"
                     /db_xref="CDD:237999"
     misc_feature    order(263560..263568,263578..263586)
                     /locus_tag="CTDLC_0235"
                     /note="flexible hinge region; other site"
                     /db_xref="CDD:237999"
     gene            complement(263701..263934)
                     /gene="acpP"
                     /locus_tag="CTDLC_0236"
                     /db_xref="GeneID:12387720"
     CDS             complement(263701..263934)
                     /gene="acpP"
                     /locus_tag="CTDLC_0236"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="YP_005812167.1"
                     /db_xref="GI:385244323"
                     /db_xref="GeneID:12387720"
                     /translation="MSLEDDVKAIIVDQLGVSPEDVKVDSSFIEDLNADSLDLTELIM
                     TLEEKFAFEISEDDAEQLRTVGDVIKYIQERQN"
     misc_feature    complement(263704..263934)
                     /gene="acpP"
                     /locus_tag="CTDLC_0236"
                     /note="acyl carrier protein; Provisional; Region: acpP;
                     PRK00982"
                     /db_xref="CDD:179197"
     gene            complement(264303..265049)
                     /gene="fabG"
                     /locus_tag="CTDLC_0237"
                     /db_xref="GeneID:12387721"
     CDS             complement(264303..265049)
                     /gene="fabG"
                     /locus_tag="CTDLC_0237"
                     /EC_number="1.1.1.100"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase"
                     /protein_id="YP_005812168.1"
                     /db_xref="GI:385244324"
                     /db_xref="GeneID:12387721"
                     /translation="MSGLLVNKTAIVTGGSRGIGFSIAKLFAEQGANVQIWGINGEAG
                     QAAAQTLSEQTGRQVSFALVDVSKNDMVSAQVQNFLAEYNTIDVIVNNAGITRDALLM
                     RMSEEEWSSVINTNLGSIYNVCSAVIRPMIKARSGAIINISSIVGLRGSPGQTNYAAA
                     KAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMTKSLNDNLKNEWLKGVPLGRVGMP
                     EEIAKAALFLASDGSSYITGQVLSVDGGMA"
     misc_feature    complement(264309..265028)
                     /gene="fabG"
                     /locus_tag="CTDLC_0237"
                     /note="beta-Keto acyl carrier protein reductase (BKR),
                     involved in Type II FAS, classical (c) SDRs; Region:
                     BKR_SDR_c; cd05333"
                     /db_xref="CDD:187594"
     misc_feature    complement(264306..265022)
                     /gene="fabG"
                     /locus_tag="CTDLC_0237"
                     /note="3-oxoacyl-(acyl-carrier-protein) reductase; Region:
                     3oxo_ACP_reduc; TIGR01830"
                     /db_xref="CDD:233590"
     misc_feature    complement(order(264468..264476,264480..264482,
                     264486..264491,264567..264569,264579..264581,
                     264618..264626,264705..264707,264765..264776,
                     264852..264860,264933..264938,264993..265004,
                     265008..265010))
                     /gene="fabG"
                     /locus_tag="CTDLC_0237"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:187594"
     misc_feature    complement(order(264312..264350,264357..264359,
                     264369..264374,264378..264383,264390..264392,
                     264399..264410,264414..264422,264483..264485,
                     264519..264524,264528..264545,264549..264554,
                     264561..264566,264573..264578,264585..264608,
                     264654..264656,264663..264668,264675..264680,
                     264684..264689,264696..264701,264711..264713,
                     264720..264725,264732..264740,264744..264755,
                     264831..264833,264960..264962,264972..264974))
                     /gene="fabG"
                     /locus_tag="CTDLC_0237"
                     /note="homotetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187594"
     misc_feature    complement(order(264528..264533,264537..264545,
                     264549..264554,264561..264566,264573..264578,
                     264585..264611,264654..264656,264663..264668,
                     264675..264677,264684..264689,264696..264701,
                     264711..264713,264720..264725,264732..264734,
                     264738..264740,264744..264752))
                     /gene="fabG"
                     /locus_tag="CTDLC_0237"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:187594"
     misc_feature    complement(order(264567..264569,264579..264581,
                     264618..264620,264702..264704))
                     /gene="fabG"
                     /locus_tag="CTDLC_0237"
                     /note="active site"
                     /db_xref="CDD:187594"
     gene            complement(265046..265975)
                     /gene="fabD"
                     /locus_tag="CTDLC_0238"
                     /db_xref="GeneID:12387722"
     CDS             complement(265046..265975)
                     /gene="fabD"
                     /locus_tag="CTDLC_0238"
                     /EC_number="2.3.1.39"
                     /codon_start=1
                     /transl_table=11
                     /product="Malonyl-CoA-[acyl-carrier-protein] transacylase"
                     /protein_id="YP_005812169.1"
                     /db_xref="GI:385244325"
                     /db_xref="GeneID:12387722"
                     /translation="MMDRVGLLFPGQGSQFVGMGRDLYQQSSEVARLFSQADEFLGFS
                     LSSIMFEGPEEVLLKTSNSQLAIYLHSLAVLEVLSTHCPFEPILVSGLSLGEYTALTA
                     SKRISLEDGLRIVQKRAELMNAACEESSGAMAAVLGLTADVVLPALESLGDGIWVANY
                     NAPKQIVIAGIRNKVEEASVILRELGAKKVVMLKVAGAFHTPLMQTAQDELAPYLYQL
                     AIKDSNVAFASNVIGELVYESEAIRSLMVRQMTFPTLWYQTCFQIDPKVDLFLELGPG
                     NVLTGLSRSIGLSSPCKHLGSMEDIENFCRSCE"
     misc_feature    complement(265061..265972)
                     /gene="fabD"
                     /locus_tag="CTDLC_0238"
                     /note="(acyl-carrier-protein) S-malonyltransferase [Lipid
                     metabolism]; Region: FabD; COG0331"
                     /db_xref="CDD:223408"
     gene            complement(265989..266996)
                     /gene="fabH"
                     /locus_tag="CTDLC_0239"
                     /db_xref="GeneID:12387723"
     CDS             complement(265989..266996)
                     /gene="fabH"
                     /locus_tag="CTDLC_0239"
                     /EC_number="2.3.1.41"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
                     /protein_id="YP_005812170.1"
                     /db_xref="GI:385244326"
                     /db_xref="GeneID:12387723"
                     /translation="MRVRVKKDMRASIWGTGSYLPKKILTNADLEKIVETSDEWISTR
                     TGIKERRIASAEEFSSFMGAKAAEKAIEAAKISKSQVDCIVFSTAAPDYIFPSSAALA
                     QAYLGIKEIPAFDCLAACTGFLYGLSIAKAYVESGMYQCVLVIAADKLSSFVNYQDRN
                     TCVLFGDGGSACIVGHSRPGALEISKVNLGADGKQGDLLRLPAGGSRCPASQDTVQNH
                     QHFITMEGKEVFKHAVRRMEFAAKTCITEAGLQEKDIDWLVPHQANERIIDAIAKRFA
                     VKDSRVFKTLAKYGNTAASSVGIALDELLRTHDIHVAERLLLVAFGGGLSWGAVILQQ
                     V"
     misc_feature    complement(265995..266972)
                     /gene="fabH"
                     /locus_tag="CTDLC_0239"
                     /note="3-oxoacyl-(acyl-carrier-protein) synthase III;
                     Region: fabH; TIGR00747"
                     /db_xref="CDD:233113"
     misc_feature    complement(266001..266969)
                     /gene="fabH"
                     /locus_tag="CTDLC_0239"
                     /note="Ketoacyl-acyl carrier protein synthase III (KASIII)
                     initiates the elongation in type II fatty acid synthase
                     systems. It is found in bacteria and plants. Elongation of
                     fatty acids in the type II systems occurs by Claisen
                     condensation of malonyl-acyl...; Region: KAS_III; cd00830"
                     /db_xref="CDD:238426"
     misc_feature    complement(order(266025..266027,266394..266399,
                     266415..266432,266541..266543,266598..266603,
                     266610..266615,266622..266624,266646..266666,
                     266688..266690,266697..266699,266724..266726,
                     266730..266732))
                     /gene="fabH"
                     /locus_tag="CTDLC_0239"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238426"
     misc_feature    complement(order(266124..266126,266214..266216,
                     266637..266639))
                     /gene="fabH"
                     /locus_tag="CTDLC_0239"
                     /note="active site"
                     /db_xref="CDD:238426"
     misc_feature    complement(266205..266207)
                     /gene="fabH"
                     /locus_tag="CTDLC_0239"
                     /note="CoA binding pocket [chemical binding]; other site"
                     /db_xref="CDD:238426"
     gene            267110..267712
                     /gene="recR"
                     /locus_tag="CTDLC_0240"
                     /db_xref="GeneID:12387724"
     CDS             267110..267712
                     /gene="recR"
                     /locus_tag="CTDLC_0240"
                     /note="Recombination protein"
                     /codon_start=1
                     /transl_table=11
                     /product="RecR protein"
                     /protein_id="YP_005812171.1"
                     /db_xref="GI:385244327"
                     /db_xref="GeneID:12387724"
                     /translation="MLKYPDYISKLISFLKKLPGIGFKSAEKIAFELLEWDPSQIEAM
                     AQALQEFSTSHATCSNCFCLKISQTSPCNFCSESRDSSSLCIVATPKDVFALEKSKIF
                     KGHYFVLGNLLSPITGKHLSLEKLAILKQRIEACSPKEMIIALDATLEGDATALFLKQ
                     EFSYLPIKISRLALGMPVGLSFDFVDANTLARAFSGRNCF"
     misc_feature    267116..267703
                     /gene="recR"
                     /locus_tag="CTDLC_0240"
                     /note="recombination protein RecR; Region: recR;
                     TIGR00615"
                     /db_xref="CDD:233054"
     misc_feature    267224..267349
                     /gene="recR"
                     /locus_tag="CTDLC_0240"
                     /note="RecR protein; Region: RecR; pfam02132"
                     /db_xref="CDD:251108"
     misc_feature    267353..267688
                     /gene="recR"
                     /locus_tag="CTDLC_0240"
                     /note="TOPRIM_recR: topoisomerase-primase (TOPRIM)
                     nucleotidyl transferase/hydrolase domain of the type found
                     in Escherichia coli RecR.  RecR participates in the RecFOR
                     pathway of homologous recombinational repair in
                     prokaryotes. This pathway provides a...; Region:
                     TOPRIM_recR; cd01025"
                     /db_xref="CDD:173775"
     misc_feature    order(267371..267376,267383..267385,267545..267547,
                     267551..267553,267557..267559)
                     /gene="recR"
                     /locus_tag="CTDLC_0240"
                     /note="putative active site [active]"
                     /db_xref="CDD:173775"
     misc_feature    order(267371..267373,267545..267547)
                     /gene="recR"
                     /locus_tag="CTDLC_0240"
                     /note="putative metal-binding site [ion binding]; other
                     site"
                     /db_xref="CDD:173775"
     misc_feature    order(267389..267397,267401..267406,267527..267529,
                     267533..267535,267539..267541,267548..267550,
                     267584..267586,267614..267649,267653..267655,
                     267668..267670,267674..267676,267680..267688)
                     /gene="recR"
                     /locus_tag="CTDLC_0240"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:173775"
     gene            268087..270465
                     /gene="yaeT"
                     /locus_tag="CTDLC_0241"
                     /db_xref="GeneID:12387725"
     CDS             268087..270465
                     /gene="yaeT"
                     /locus_tag="CTDLC_0241"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein"
                     /protein_id="YP_005812172.1"
                     /db_xref="GI:385244328"
                     /db_xref="GeneID:12387725"
                     /translation="MLGIRKKTILQLAVLLLLTFSRSSFCSTSEGRMVVESITITTQG
                     ENTQNKRAIPKIKTKQGTLFSQADFDEDLRTLSKDFDRVEPIVEFRNGQAVISLILTA
                     KPVIREINISGNEAIPTHKILKTLELYKNDLFDRELFFKNFDALRTLYLKRGYYDSQL
                     SYSHNHNEKEGFIDISIEIKEGRHGRIKKLTISGITRTEASDLGDIVLTKQYSTTTSW
                     FTGAGVYHPDMVEQDLFAITNYFQNKGYADAKVSKEVSTDAKGNITLLIVVDKGPLYT
                     LGHVHIEGFTALSKRLLDKQLLVGPNSLYCPDKIWTGAQKIRSAYARYGYVNTNVDVS
                     FSAHPTLPVYDVTYRVSEGSPYKIGLIKIKGNTHTKHDVILHETSLFPGDTFDRLKLE
                     GTETRLRNTGYFKSVSVYTVRSQLDPLDSNDLYRDVFIEVKETETGNLGLFLGFSSID
                     HLFGGAEIAESNFDLFGARNFLKKGFKSLRGGGEYLFLKANLGDKVTDYTVKWTKPHF
                     LNTPWILGVELDKSINKALSKDYSVDTYGGNISTTYILNDKLKYGMYYRGSQTSLSLR
                     KKTSSSNRPGPDLDSNKGFVSAAGLNVLYDSIDNPRKPTMGIRSSLNFELSGLGGTYQ
                     FTKLTASGSIYRLLTKKGVLKVRAEAKFIKPFGTTTAQGIPVSERFFLGGETTVRGYK
                     PFIIGPKFSPTEPQGGLSSLLLTEEFQYPLISQPCINAFVFLDSGFIGIEEYTIRLKD
                     LCSSAGFGLRFDMMNNVPIMLGWGWPFRPTEILNNEKIDVSQRFFFALGGVF"
     misc_feature    268171..270462
                     /gene="yaeT"
                     /locus_tag="CTDLC_0241"
                     /note="Outer membrane protein/protective antigen OMA87
                     [Cell envelope biogenesis, outer membrane]; Region:
                     COG4775"
                     /db_xref="CDD:227116"
     misc_feature    268396..268632
                     /gene="yaeT"
                     /locus_tag="CTDLC_0241"
                     /note="Surface antigen variable number repeat; Region:
                     Surf_Ag_VNR; pfam07244"
                     /db_xref="CDD:254121"
     misc_feature    268642..268902
                     /gene="yaeT"
                     /locus_tag="CTDLC_0241"
                     /note="Surface antigen variable number repeat; Region:
                     Surf_Ag_VNR; pfam07244"
                     /db_xref="CDD:254121"
     misc_feature    268909..269145
                     /gene="yaeT"
                     /locus_tag="CTDLC_0241"
                     /note="Surface antigen variable number repeat; Region:
                     Surf_Ag_VNR; pfam07244"
                     /db_xref="CDD:254121"
     misc_feature    269152..269388
                     /gene="yaeT"
                     /locus_tag="CTDLC_0241"
                     /note="Surface antigen variable number repeat; Region:
                     Surf_Ag_VNR; pfam07244"
                     /db_xref="CDD:254121"
     misc_feature    269521..270462
                     /gene="yaeT"
                     /locus_tag="CTDLC_0241"
                     /note="Surface antigen; Region: Bac_surface_Ag; pfam01103"
                     /db_xref="CDD:250364"
     gene            270534..271055
                     /gene="ompH"
                     /locus_tag="CTDLC_0242"
                     /db_xref="GeneID:12387726"
     CDS             270534..271055
                     /gene="ompH"
                     /locus_tag="CTDLC_0242"
                     /note="Outer membrane protein"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH porin-like protein"
                     /protein_id="YP_005812173.1"
                     /db_xref="GI:385244329"
                     /db_xref="GeneID:12387726"
                     /translation="MKKFLLLSLMSLSSLPTFAANSTGTIGIVNLRRCLEESALGKKE
                     SAEFEKMKNQFSNSMGKMEEELSSIYSKLQDDDYMEGLSETAAAELRKKFEDLSAEYN
                     TAQGQYYQILNQSNLKRMQKIMEEVKKASETVRIQEGLSVLLNEDIVLSIDSSADKTD
                     AVIKVLDDSFQNN"
     misc_feature    270534..271040
                     /gene="ompH"
                     /locus_tag="CTDLC_0242"
                     /note="Outer membrane protein [Cell envelope biogenesis,
                     outer membrane]; Region: HlpA; COG2825"
                     /db_xref="CDD:225381"
     gene            271083..272147
                     /gene="lpxD"
                     /locus_tag="CTDLC_0243"
                     /db_xref="GeneID:12387727"
     CDS             271083..272147
                     /gene="lpxD"
                     /locus_tag="CTDLC_0243"
                     /EC_number="2.3.1.-"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-[3-hydroxymyristoyl] glucosamine
                     N-acyltransferase"
                     /protein_id="YP_005812174.1"
                     /db_xref="GI:385244330"
                     /db_xref="GeneID:12387727"
                     /translation="MSQSTYSLEQLADFLKVEFQGNGATLLSGVEEIEEAKTAHITFL
                     DNEKYAKHLKSSEAGAIIISRTQFQKYRDLNKNFLITSESPSLVFQKCLELFITPVDS
                     GFPGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSY
                     IHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIG
                     ANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIG
                     GQAGITGHICIADHVIMMAQTGVTKSITSPGIYGGAPARPYQEIHRQVAKVRNLPRLE
                     ERIAALEKLVQKLEALSEQH"
     misc_feature    271110..272093
                     /gene="lpxD"
                     /locus_tag="CTDLC_0243"
                     /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
                     N-acyltransferase; Region: lipid_A_lpxD; TIGR01853"
                     /db_xref="CDD:233599"
     misc_feature    271149..271370
                     /gene="lpxD"
                     /locus_tag="CTDLC_0243"
                     /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine
                     N-acyltransferase, LpxD; Region: LpxD; pfam04613"
                     /db_xref="CDD:252703"
     misc_feature    271428..272039
                     /gene="lpxD"
                     /locus_tag="CTDLC_0243"
                     /note="UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD):
                     The enzyme catalyzes the transfer of 3-hydroxymyristic
                     acid or 3-hydroxy-arachidic acid, depending on the
                     organism, from the acyl carrier protein (ACP) to
                     UDP-3-O-acyl-glucosamine to produce UDP-2; Region:
                     LbH_LpxD; cd03352"
                     /db_xref="CDD:100043"
     misc_feature    order(271464..271466,271476..271481,271533..271535,
                     271572..271574,271578..271580,271584..271586,
                     271620..271622,271626..271628,271644..271646,
                     271650..271652,271686..271694,271728..271730,
                     271740..271742,271746..271748,271752..271754,
                     271761..271769,271794..271796,271800..271808,
                     271812..271814,271824..271826,271842..271844,
                     271848..271850,271860..271868,271896..271898,
                     271914..271922,271932..271934,271968..271976,
                     272025..272027,272037..272039)
                     /gene="lpxD"
                     /locus_tag="CTDLC_0243"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:100043"
     misc_feature    order(271650..271658,271800..271802,271812..271814,
                     271821..271826,271854..271859,271872..271880,
                     271929..271934,271965..271967)
                     /gene="lpxD"
                     /locus_tag="CTDLC_0243"
                     /note="active site"
                     /db_xref="CDD:100043"
     misc_feature    order(271650..271658,271821..271826,271875..271880,
                     271929..271934)
                     /gene="lpxD"
                     /locus_tag="CTDLC_0243"
                     /note="UDP-GlcNAc binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:100043"
     misc_feature    order(271800..271802,271812..271814,271854..271859,
                     271872..271874,271965..271967)
                     /gene="lpxD"
                     /locus_tag="CTDLC_0243"
                     /note="lipid binding site [chemical binding];
                     lipid-binding site"
                     /db_xref="CDD:100043"
     gene            complement(272144..273340)
                     /locus_tag="CTDLC_0244"
                     /db_xref="GeneID:12387728"
     CDS             complement(272144..273340)
                     /locus_tag="CTDLC_0244"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812175.1"
                     /db_xref="GI:385244331"
                     /db_xref="GeneID:12387728"
                     /translation="MKFHFPCSEGLIRGFSREFLCCILTDKKIQYPLKNFICVEFIVN
                     SFFGILPRGIPNVGRLSEVAGENKQSLEEREQDKALKLEKKLLAIRKRIKCFCPQQSE
                     ISVQAAPLKHTGTFPCSEEELRDISDLFSSLKFFRQQLAQLFFYTPPLNLGWEDFLKF
                     FFAFEKRELGGILFSAGPFESFDRYLYQVNKARPVPVLIATTVSYALQAYCSYINRAP
                     FQEKENFFQLGEAVGIFLKERMVSIALMYKEILDLDNKQYSELCRGIQKSQIVQGEVF
                     HSSTQERDGLNPISVNYDLMGTIAALSVNIDRSCLRFSGSHIFHDDEMAIETLHKGGD
                     VFTFSSLAEFQFSEKRLLHLVSTGRVCPEIIRKKLIKVLLLKKKALCKPFCRHIQITS
                     ETAQLN"
     gene            273562..274584
                     /gene="pdhA"
                     /locus_tag="CTDLC_0245"
                     /db_xref="GeneID:12387729"
     CDS             273562..274584
                     /gene="pdhA"
                     /locus_tag="CTDLC_0245"
                     /EC_number="1.2.4.1"
                     /codon_start=1
                     /transl_table=11
                     /product="Pyruvate dehydrogenase E1 component alpha
                     subunit"
                     /protein_id="YP_005812176.1"
                     /db_xref="GI:385244332"
                     /db_xref="GeneID:12387729"
                     /translation="MHPLTLNIASEETTEARVFHVIENFGNSFCIDLLKKMLLIREFE
                     IRGEEAYLEGLVGGFYHSYIGQEAVATAAIACTGKDHWFFSSYRCHGVALLLDIPLRQ
                     LAAELLGKETGCALGRGGSMHMCGDRLPGGFGIVGGQIPLAAGAAFSMKYQNSSSISM
                     CFIGDGAVAQGVFHETLNFVALHSLPLMLIIENNGWSMGTALHRAIAKQPIAESQAIS
                     YGLSSITLNGFDLFNSLIGFREAYHHMQQTGSPIIVEALCSRFRGHSISDPNLYRSKE
                     EMQCLLKRDPILFAKEWLIRANVLSEDDFKDLRQTSKTAVLEAVAQARLDPEPAVATL
                     EEGVYA"
     misc_feature    273658..274530
                     /gene="pdhA"
                     /locus_tag="CTDLC_0245"
                     /note="Thiamine pyrophosphate (TPP) family, E1 of
                     PDC_ADC_BCADC subfamily, TPP-binding module; composed of
                     proteins similar to the E1 components of the human
                     pyruvate dehydrogenase complex (PDC), the acetoin
                     dehydrogenase complex (ADC) and the branched chain...;
                     Region: TPP_E1_PDC_ADC_BCADC; cd02000"
                     /db_xref="CDD:238958"
     misc_feature    order(273730..273732,273886..273888,273961..273966,
                     274057..274059,274063..274074,274081..274083,
                     274093..274095,274105..274107,274150..274161,
                     274204..274206,274219..274221,274372..274374)
                     /gene="pdhA"
                     /locus_tag="CTDLC_0245"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238958"
     misc_feature    order(273820..273825,273961..273963,273967..273969,
                     274051..274062,274141..274143,274147..274149,
                     274351..274353)
                     /gene="pdhA"
                     /locus_tag="CTDLC_0245"
                     /note="TPP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238958"
     misc_feature    order(273946..273948,273952..273954,273958..273960,
                     273973..273975,273982..273987,273994..273999,
                     274003..274008,274015..274017,274072..274077,
                     274093..274098,274105..274107)
                     /gene="pdhA"
                     /locus_tag="CTDLC_0245"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238958"
     misc_feature    order(274336..274356,274360..274362,274363..274389,
                     274411..274419)
                     /gene="pdhA"
                     /locus_tag="CTDLC_0245"
                     /note="phosphorylation loop region [posttranslational
                     modification]"
                     /db_xref="CDD:238958"
     gene            274577..275563
                     /gene="pdhB"
                     /locus_tag="CTDLC_0246"
                     /db_xref="GeneID:12387730"
     CDS             274577..275563
                     /gene="pdhB"
                     /locus_tag="CTDLC_0246"
                     /EC_number="1.2.4.1"
                     /codon_start=1
                     /transl_table=11
                     /product="Pyruvate dehydrogenase E1 component beta
                     subunit"
                     /protein_id="YP_005812177.1"
                     /db_xref="GI:385244333"
                     /db_xref="GeneID:12387730"
                     /translation="MPNFVTLEIREAIRQAIDEEMTRDPNVCILGEEVAEYNGAYKVT
                     KNLLDKWGPTRVIDTPISEAAFSGIGIGAALTGLRPIIEFMSWNFSLVAADQIISHAA
                     KMYYMTGGKFAVPIVFRGANGAAAQVSCQHSHCIEALYANIPGLIVIAPSTPADAKGL
                     LKSAIRDNNPVLFLENELDYNLKGEVPSEEYLIPIGKARIVQEGKDLTIISHSRMVSI
                     VEQAAKTAKQRWGLSIETIDLRTIKPLDVATLLTSVKKTGNCLVVEEGHYFCGISSEV
                     ITTITEHIFDYLDHPPLRVCQKETPMPYNKTLEMATLPNINRILDAIEKIMR"
     misc_feature    274592..275560
                     /gene="pdhB"
                     /locus_tag="CTDLC_0246"
                     /note="Pyruvate/2-oxoglutarate dehydrogenase complex,
                     dehydrogenase (E1) component, eukaryotic type, beta
                     subunit [Energy production and conversion]; Region: AcoB;
                     COG0022"
                     /db_xref="CDD:223101"
     misc_feature    274607..275107
                     /gene="pdhB"
                     /locus_tag="CTDLC_0246"
                     /note="Pyrimidine (PYR) binding domain of the beta
                     subunits of the E1 components of human pyruvate
                     dehydrogenase complex (E1- PDHc) and related proteins;
                     Region: TPP_PYR_E1-PDHc-beta_like; cd07036"
                     /db_xref="CDD:132919"
     misc_feature    order(274649..274651,274655..274657,274673..274675,
                     274739..274741,274748..274750,274754..274771,
                     274778..274783,274787..274795,274850..274852,
                     274859..274864,274889..274894,274958..274960,
                     274967..274969,275012..275017,275078..275083)
                     /gene="pdhB"
                     /locus_tag="CTDLC_0246"
                     /note="alpha subunit interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:132919"
     misc_feature    order(274670..274672,274757..274759,274763..274765,
                     274841..274843,274850..274852)
                     /gene="pdhB"
                     /locus_tag="CTDLC_0246"
                     /note="TPP binding site [chemical binding]; other site"
                     /db_xref="CDD:132919"
     misc_feature    order(274673..274675,274748..274750,274754..274765,
                     274847..274852,274856..274858,274871..274873,
                     274883..274885,274892..274894,274958..274960,
                     274964..274969,274991..274993,274997..275002,
                     275006..275008)
                     /gene="pdhB"
                     /locus_tag="CTDLC_0246"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:132919"
     misc_feature    275162..275521
                     /gene="pdhB"
                     /locus_tag="CTDLC_0246"
                     /note="Transketolase, C-terminal domain; Region:
                     Transketolase_C; pfam02780"
                     /db_xref="CDD:251527"
     gene            275568..276857
                     /gene="pdhC"
                     /locus_tag="CTDLC_0247"
                     /db_xref="GeneID:12387731"
     CDS             275568..276857
                     /gene="pdhC"
                     /locus_tag="CTDLC_0247"
                     /EC_number="2.3.1.12"
                     /codon_start=1
                     /transl_table=11
                     /product="Dihydrolipoamide acetyltransferase component of
                     pyruvate dehydrogenase complex"
                     /protein_id="YP_005812178.1"
                     /db_xref="GI:385244334"
                     /db_xref="GeneID:12387731"
                     /translation="MVSLLKMPKLSPTMEIGILVKWHKKAGDEIHFGDVLLEISTDKA
                     VLEHTASEDGWLLEILVEEGTKTPIGTPIAVFSTEQNAQYDLKQLLPLEGTVVTDAAT
                     EASPKNSAQTDSQYTSGPSITMMGFRPEPPLAIPLTIKHSNDPVLASPLAKKLAKEQN
                     LDLSGVTGSGPGGRIVKKDLEKAPPLRIAGFGYPEAPNVNPGSYIEEPLSPVREVISK
                     RLQAAKTFIPHFYVRQRIYASPLLALLKELQEQNIKLSINDCIVRACALALKEFPEIN
                     SGFNSVDNKIIRFSTIDISIAVAIPDGVIAPIVRCADRKNIGMISAEIKGLATKAKQQ
                     SLAEEEYKGGSFCVSNLGMTGISDFTAILNPPQAAILAVGSVEEQPVVLNGELAVGLT
                     CMLTLSVDHRVIDGYPAAMFMKRLQRLLEAPSVLLLN"
     misc_feature    275577..276851
                     /gene="pdhC"
                     /locus_tag="CTDLC_0247"
                     /note="pyruvate dehydrogenase complex dihydrolipoamide
                     acetyltransferase, long form; Region: PDHac_trf_mito;
                     TIGR01349"
                     /db_xref="CDD:233367"
     misc_feature    275580..275795
                     /gene="pdhC"
                     /locus_tag="CTDLC_0247"
                     /note="Lipoyl domain of the dihydrolipoyl acyltransferase
                     component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
                     dehydrogenase multienzyme complexes, like pyruvate
                     dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
                     and branched-chain 2-oxo acid...; Region: lipoyl_domain;
                     cd06849"
                     /db_xref="CDD:133458"
     misc_feature    order(275664..275666,275685..275702,275712..275714)
                     /gene="pdhC"
                     /locus_tag="CTDLC_0247"
                     /note="E3 interaction surface; other site"
                     /db_xref="CDD:133458"
     misc_feature    275694..275696
                     /gene="pdhC"
                     /locus_tag="CTDLC_0247"
                     /note="lipoyl attachment site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:133458"
     misc_feature    276003..276113
                     /gene="pdhC"
                     /locus_tag="CTDLC_0247"
                     /note="e3 binding domain; Region: E3_binding; pfam02817"
                     /db_xref="CDD:251550"
     misc_feature    276225..276851
                     /gene="pdhC"
                     /locus_tag="CTDLC_0247"
                     /note="2-oxoacid dehydrogenases acyltransferase (catalytic
                     domain); Region: 2-oxoacid_dh; pfam00198"
                     /db_xref="CDD:249671"
     gene            complement(276884..279328)
                     /gene="glgP"
                     /locus_tag="CTDLC_0248"
                     /db_xref="GeneID:12387732"
     CDS             complement(276884..279328)
                     /gene="glgP"
                     /locus_tag="CTDLC_0248"
                     /EC_number="2.4.1.1"
                     /codon_start=1
                     /transl_table=11
                     /product="Glycogen phosphorylase"
                     /protein_id="YP_005812179.1"
                     /db_xref="GI:385244335"
                     /db_xref="GeneID:12387732"
                     /translation="MYFDRTKINVESMKQAILERVYCGVVQTPQSASTRDIFTAVAKT
                     VLEWMAKGWLKTQSSYYDNDVKRVYYISMEFLLGRSLKSNLLNLGLLDLVKEALFDLG
                     YDFDQLVEMEHDAGLGNGGLGRLAACFLDSMATLEIPAYGYGLRYDYGIFDQKIENGF
                     QVESPDEWLRYGNPWEICRGEYLYPVHFYGKVKHSIDSRGRDVAELVDSQEVLAMAYD
                     VPVPGFNNDAVNSLRLWQAQSRHGFEFSYFNHGNYIRAIEDIALAGNITRVLYPNDSI
                     SEGQELRLKQEYFLVSATIQDILRRYTKTHLSLDKLSEKVSVQLNDTHPALGIAEMMR
                     LLVDREELDWDVAWDATTKIFNYTNHTILPEALERWSLDLFSKVLPRHLEIIYEINAR
                     WLAKVSQKYPGDNDKRRALSIIEEGSSKFVNMANLAVVGTNKVNGVSTFHSQLIKSTL
                     FKDFVEFFPDKFINVTNGITPRRWLALSNKKLSSLLNRTIGTEYLTNLTHLHKVIPLA
                     EDSGFREEWRNIKIQNKEELAARIYKELGVTVNPQSIFDCHIKRIHEYKRQLMNILRV
                     IYFYNEIRNGSGEIVPTTVIFGGKAAPGYAMAKLIIKLINNVAAVVNNDPKVNDQLKV
                     IFWPNYRVSLAEAIIPATDLSEQISTAGMEASGTGNMKFALNGALTIGTMDGANIEMA
                     EHIGKEHMFIFGLLEEEISELRKEYYPQGICNANPTIQEILDMIAQAKFSQEDKDLFK
                     PIVNRLLNEGDPFFVLADLEAYINTQNRVASLFKQPEEWTKKSIYNVGGIGFFSSDRS
                     IAEYASNIWNVSRPTS"
     misc_feature    complement(276902..279289)
                     /gene="glgP"
                     /locus_tag="CTDLC_0248"
                     /note="This is a family of oligosaccharide phosphorylases.
                     It includes yeast and mammalian glycogen phosphorylases,
                     plant starch/glucan phosphorylase, as well as the
                     maltodextrin phosphorylases of bacteria. The members of
                     this family catalyze the breakdown of...; Region:
                     GT1_Glycogen_Phosphorylase; cd04300"
                     /db_xref="CDD:99996"
     misc_feature    complement(order(278501..278503,278510..278512,
                     278792..278794,279185..279193,279260..279268,
                     279272..279277,279281..279283,279287..279289))
                     /gene="glgP"
                     /locus_tag="CTDLC_0248"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99996"
     misc_feature    complement(276902..279280)
                     /gene="glgP"
                     /locus_tag="CTDLC_0248"
                     /note="glycogen/starch/alpha-glucan phosphorylases;
                     Region: P_ylase; TIGR02093"
                     /db_xref="CDD:233722"
     misc_feature    complement(order(277343..277345,277352..277363,
                     277367..277369,277433..277438,277538..277540,
                     277544..277546,277559..277561,277658..277669,
                     277673..277678,277907..277909,277928..277930,
                     278234..278236,278246..278251,278357..278359,
                     278363..278365,278480..278482,278501..278503,
                     278507..278509,278516..278518,279101..279103,
                     279107..279109))
                     /gene="glgP"
                     /locus_tag="CTDLC_0248"
                     /note="active site pocket [active]"
                     /db_xref="CDD:99996"
     gene            279484..279834
                     /locus_tag="CTDLC_0249"
                     /db_xref="GeneID:12387733"
     CDS             279484..279834
                     /locus_tag="CTDLC_0249"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812180.1"
                     /db_xref="GI:385244336"
                     /db_xref="GeneID:12387733"
                     /translation="MGIKPHDHGCWGSRGNIFTLQDLDTQQANQSAAASSSSVLKSEC
                     TAKVARYALGFLFGLGFILSIVTFIAAAATLPLGTVTILIMVTQAAFAAALAFKLYDL
                     FKHDVPTCSITSKA"
     gene            complement(279888..281258)
                     /gene="dnaA"
                     /locus_tag="CTDLC_0250"
                     /db_xref="GeneID:12387734"
     CDS             complement(279888..281258)
                     /gene="dnaA"
                     /locus_tag="CTDLC_0250"
                     /note="Chromosomal replication initiator protein"
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase DnaA"
                     /protein_id="YP_005812181.1"
                     /db_xref="GI:385244337"
                     /db_xref="GeneID:12387734"
                     /translation="MRAWEEFLLLQEKEIGVDTVNKWLRSLKVLCFDACNLYLEAKDS
                     FQVTWFEEHIRHKVKASLINNNGKPIRVRVTSLDKSTPFKETQIQQEKTAYFTMKYGD
                     IDPNMSFANFLVTPENDLPVRILQEFAKVSEQGKGFPFNPIYLFGPESSGKTHLMQAA
                     VGGLREAGVKTLYVTSELFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGA
                     TQEEFFHTFNSLHTEGKLIVISSTFAPGDLKAMEERLISRFEWGISIPVSPLIREGLK
                     SFLERRTEKLNIRIEETALDFLIQALSSHVKSLLHALTTLAKRVAYKKLSHQMLYQGD
                     IEALLHDVLQAAESIRLTPSGIVRATAQYYGVSPESVLGRSQSREYVLPRQVAMFLCR
                     QKLSLSYVKIGEVFSRDHSTVISSIRAISQKLEEDDRECDVSRAIQELTKRLSSAYQS
                     LDFIED"
     misc_feature    complement(279921..281258)
                     /gene="dnaA"
                     /locus_tag="CTDLC_0250"
                     /note="chromosomal replication initiation protein;
                     Provisional; Region: PRK12422"
                     /db_xref="CDD:183521"
     misc_feature    complement(281100..281249)
                     /gene="dnaA"
                     /locus_tag="CTDLC_0250"
                     /note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
                     /db_xref="CDD:256535"
     misc_feature    complement(280473..280892)
                     /gene="dnaA"
                     /locus_tag="CTDLC_0250"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    complement(280797..280820)
                     /gene="dnaA"
                     /locus_tag="CTDLC_0250"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    complement(order(280533..280535,280635..280637,
                     280794..280817))
                     /gene="dnaA"
                     /locus_tag="CTDLC_0250"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    complement(280632..280649)
                     /gene="dnaA"
                     /locus_tag="CTDLC_0250"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    complement(280497..280499)
                     /gene="dnaA"
                     /locus_tag="CTDLC_0250"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    complement(279927..280193)
                     /gene="dnaA"
                     /locus_tag="CTDLC_0250"
                     /note="C-terminal domain of bacterial DnaA proteins. The
                     DNA-binding C-terminal domain of DnaA contains a
                     helix-turn-helix motif that specifically interacts with
                     the DnaA box, a 9-mer motif that occurs repetitively in
                     the replication origin oriC. Multiple...; Region:
                     Bac_DnaA_C; cd06571"
                     /db_xref="CDD:119330"
     misc_feature    complement(order(280002..280007,280014..280016,
                     280023..280037,280059..280067,280083..280085,
                     280104..280109,280131..280133))
                     /gene="dnaA"
                     /locus_tag="CTDLC_0250"
                     /note="DnaA box-binding interface [nucleotide binding];
                     other site"
                     /db_xref="CDD:119330"
     gene            complement(281335..283698)
                     /gene="yidC"
                     /locus_tag="CTDLC_0251"
                     /db_xref="GeneID:12387735"
     CDS             complement(281335..283698)
                     /gene="yidC"
                     /locus_tag="CTDLC_0251"
                     /codon_start=1
                     /transl_table=11
                     /product="60 kDa inner membrane protein YIDC"
                     /protein_id="YP_005812182.1"
                     /db_xref="GI:385244338"
                     /db_xref="GeneID:12387735"
                     /translation="MRMNKRTLLFVSLVSAAFLGCQIFFGYRDLKSCQDLAEKQRAIS
                     EQILASTEQLSVVPWTASLEESESVNQYAIRLGNRLLLLTKGGSHPEVYSRGTYWSLI
                     EQTSTFGGILVSLYGETGQEVLSKGSSVYLPNQRDAFPVLVAEFRSNQEPLVFLGEYK
                     DGKIANKAGAIYGTSLVFLNTGNGFVPLGIYNSKEECVESLDLPMARAVVFADKENPT
                     ASGSYYMLSNEYMQIVVSQESGAIEGINLPFASDQEENKSIVNEIGFDRELAINSPSE
                     ASFPGVETIDSQRQNIANVVGGYYPLLRRGTLSDVKKRVPAQYQALNIVSGRELASPV
                     ATGFRVVSFDNKTLILESGDGGIRRTYSLGEQPYAFELEIQTTQGREDLWITSGVPEV
                     EIMSNAFVPAVKYHAVKKNKSDLFNVKLPKAKDSLLVRNNATPQWILNSNGYFGVILT
                     PRIPIPAGYASSFIPGNVVPTRLSQLPPKDQAYPASKYPGYTAMLPLPKEAGRYQFMV
                     YAGPLADPTLKALDRANANSKGETPEYVDAIAFRGFFSFITEPFAALLFVIMKFFKFL
                     TGSWGISIILLTIVLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKREPKRAQMEI
                     MALYKMNKVNPITGCLPLLIQIPFLIAMFDLLKSSFLLRGASFIPGWIDNLTAPDVLF
                     SWETPIWFIGKEFHLLPILLGVVMFAQQKISAVKRSGPASDQQRQQEAMGTMMALLFT
                     FMFYNFPSGLNIYWFSSMLLGVIQQWVTNKILDEKHLQHEVIINKKR"
     misc_feature    complement(281338..283692)
                     /gene="yidC"
                     /locus_tag="CTDLC_0251"
                     /note="putative inner membrane protein translocase
                     component YidC; Provisional; Region: PRK01001"
                     /db_xref="CDD:234887"
     misc_feature    complement(281338..282399)
                     /gene="yidC"
                     /locus_tag="CTDLC_0251"
                     /note="Preprotein translocase subunit YidC [Intracellular
                     trafficking and secretion]; Region: YidC; COG0706"
                     /db_xref="CDD:223778"
     gene            complement(284008..284826)
                     /gene="lgt"
                     /locus_tag="CTDLC_0252"
                     /db_xref="GeneID:12387736"
     CDS             complement(284008..284826)
                     /gene="lgt"
                     /locus_tag="CTDLC_0252"
                     /EC_number="2.4.99.-"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="YP_005812183.1"
                     /db_xref="GI:385244339"
                     /db_xref="GeneID:12387736"
                     /translation="MIHWDQSRTLLSFPRVGLHLSWYGILFSLGIFLSSFSGIKLATA
                     LCKDREEKKELRTSLENFALGALLAIIIGARLAYVLFYGGSFYFENPSEIIKIWKGGL
                     SSHGAVISVVIWAAVFSRLHIRKLPMLSVTYICDLCGAVFGCAALLIRVGNFMNQEIL
                     GTPTSMPWGVIFPNGGGQIPRHPVQLYEGLGYLVLSCILYRLCYRGVIRLGSGYSAAG
                     ALIGVAVIRFCAEFFKTHQGAWLGEENILTIGQWLSIPMIFLGVGIIWIASKKK"
     misc_feature    complement(284011..284778)
                     /gene="lgt"
                     /locus_tag="CTDLC_0252"
                     /note="prolipoprotein diacylglyceryl transferase;
                     Reviewed; Region: PRK00052"
                     /db_xref="CDD:234599"
     gene            285077..285724
                     /locus_tag="CTDLC_0253"
                     /db_xref="GeneID:12387737"
     CDS             285077..285724
                     /locus_tag="CTDLC_0253"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812184.1"
                     /db_xref="GI:385244340"
                     /db_xref="GeneID:12387737"
                     /translation="MRKFWLLASFGLLSLTTTTLSSCAVSNSGSYNARLYTKGSKAKG
                     VVAMLPVFYRTEKSAELLPWNLQAEFSEEISRRLHSSDKLLLIKHHASAGVAAQFFSP
                     TPNISPELATQLLPAEFVVAAEILEQKTTEDVLNPSISASVRVRVFDIRHNKVSMIYQ
                     EILDASQSLASGSNDYHRYGWRSKNFDSTPMGLMHQRLFREIVARVEGYVCANYS"
     gene            285728..286498
                     /locus_tag="CTDLC_0254"
                     /db_xref="GeneID:12387738"
     CDS             285728..286498
                     /locus_tag="CTDLC_0254"
                     /codon_start=1
                     /transl_table=11
                     /product="CAAX amino terminal protease"
                     /protein_id="YP_005812185.1"
                     /db_xref="GI:385244341"
                     /db_xref="GeneID:12387738"
                     /translation="MVGLGLLLVFVGISIFLVNGFFVWPKPEKHTRLPFSLVCLGAVL
                     LLLPALLPTGDPLSSISKVSFHGIFVFSAFLFLLLGLPAPITQSILYAGRTTSSTPWL
                     LAIRAGARMWVITITATQILARLLQLVLPLILPKQLFQEQVITEEIREQLSTRPDLLY
                     IFCIAMLIPIAEEIFFRGILQTFFKNTFSRSKAVVTSSLIFAITHIEASLGSFIFVPT
                     LFVFSLCAGFIYEKVRHIAAPVTLHILFNSCQLALLSL"
     misc_feature    286199..286468
                     /locus_tag="CTDLC_0254"
                     /note="CAAX protease self-immunity; Region: Abi;
                     pfam02517"
                     /db_xref="CDD:251346"
     gene            complement(286706..287089)
                     /locus_tag="CTDLC_0255"
                     /db_xref="GeneID:12387739"
     CDS             complement(286706..287089)
                     /locus_tag="CTDLC_0255"
                     /codon_start=1
                     /transl_table=11
                     /product="mazG-related protein"
                     /protein_id="YP_005812186.1"
                     /db_xref="GI:385244342"
                     /db_xref="GeneID:12387739"
                     /translation="MEEKGILQLVEISRAMALQGVCPWTNLQSVESMLQYIAGECQEL
                     ADAVQENKASLEIASEAGDVLTLVLTLCFLLEREGKLKAEEVFVEALAKLRRRSPHVF
                     DPHNQISLEQAEEYWARMKQQEKIS"
     misc_feature    complement(286727..287068)
                     /locus_tag="CTDLC_0255"
                     /note="Nucleoside Triphosphate Pyrophosphohydrolase (EC
                     3.6.1.8) N-terminal tandem-domain of MazG proteins from
                     Escherichia coli and bacterial homologs; Region:
                     NTP-PPase_MazG_Nterm; cd11528"
                     /db_xref="CDD:212135"
     misc_feature    complement(order(286808..286813,286817..286825,
                     286829..286843,286850..286852,286877..286879,
                     286886..286888,286892..286909,286916..286921,
                     286931..286933,286946..286948,286955..286957,
                     286964..286969,286976..286981,286988..286990,
                     286997..287002,287054..287056,287063..287068))
                     /locus_tag="CTDLC_0255"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212135"
     misc_feature    complement(order(286901..286903,286910..286912,
                     286961..286963,286970..286972))
                     /locus_tag="CTDLC_0255"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:212135"
     gene            287278..288522
                     /locus_tag="CTDLC_0256"
                     /db_xref="GeneID:12387740"
     CDS             287278..288522
                     /locus_tag="CTDLC_0256"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812187.1"
                     /db_xref="GI:385244343"
                     /db_xref="GeneID:12387740"
                     /translation="MFSSAIVILTAIFVLCSGFVSLSHIALFSLPSSLIAHYSHSKNR
                     QLRQIANLMAYPNHLLMTLVFFDIGINIGVQNCIATLVGDSASLLLTVGVPLALTLVL
                     GEIVPKVIAIPYNARIAKIVTPIIFASTKSFRPIFDWAISGINFIVQKMLARQESDFI
                     QPQELKEVLRSCKDFGVVNHEESRLLFGYLSMEEGSIKERMTPKQEIIFYDVLTPIEN
                     LYKLFSGPKQSYSKVLVCKGGLQNLLGVCSAKLLLLYKEKLQSAEELLPLLRKPHYIP
                     ETVSAKTALYHLAGEDCGLGIIIDEYGSIEGLITQNDLFKIVSDGVAHNRPSFKQFAH
                     SDKNVVIAAGTYELSDFYDLFGVDLPTTANCVTIGGWLTEQLGEIPETGTKFAWGQFV
                     FQILDAAPNCVKRVYIRKTHGN"
     misc_feature    287278..288516
                     /locus_tag="CTDLC_0256"
                     /note="Hemolysins and related proteins containing CBS
                     domains [General function prediction only]; Region: TlyC;
                     COG1253"
                     /db_xref="CDD:224173"
     misc_feature    287290..287823
                     /locus_tag="CTDLC_0256"
                     /note="Domain of unknown function DUF21; Region: DUF21;
                     pfam01595"
                     /db_xref="CDD:250731"
     misc_feature    287893..288219
                     /locus_tag="CTDLC_0256"
                     /note="The CBS domain, named after human CBS, is a small
                     domain originally identified in cystathionine
                     beta-synthase and is subsequently found in a wide range of
                     different proteins. CBS domains usually occur in tandem
                     repeats. They associate to form a so-called...; Region:
                     CBS_pair; cl15354"
                     /db_xref="CDD:265675"
     misc_feature    288283..288507
                     /locus_tag="CTDLC_0256"
                     /note="Transporter associated domain; Region: CorC_HlyC;
                     smart01091"
                     /db_xref="CDD:215020"
     gene            288512..289726
                     /locus_tag="CTDLC_0257"
                     /db_xref="GeneID:12387741"
     CDS             288512..289726
                     /locus_tag="CTDLC_0257"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812188.1"
                     /db_xref="GI:385244344"
                     /db_xref="GeneID:12387741"
                     /translation="METNSPFFWLGVNLLCIFVQGFFSMMEMACISFNRVRLQYYLTK
                     SNKKASYINFLVRRPYRLFGTVMLGVNIALQIGSESSRTCYKLLGISPEYAPATQIIL
                     VVIFAELIPLAISRKIPEKIALKGAPILYFAHYLFYPLIQCVGGITNMIYFILNIKEE
                     TLHSTLSRDELQKTLETHHEEHDFNVIATNIFSLSATSVEQVCQYLDQIPILSATASV
                     RDVCQLVRRHRLDFVPVYHKVKKNVVGIAFPKNLINRNPSDPVVPYLSSPWFITAKSK
                     LIHAIQEFRKNSSNVAIVLNNNGEPMGVLGLHTVFKTLFNTRNIAQLKPKPTSLIERT
                     FSGNTPLSEIENELDIIFMDNDCTTIEQLMLKLLDTPPEVGASIIINDLLLEVKEISL
                     YGIKTVAIKDTL"
     misc_feature    288521..289714
                     /locus_tag="CTDLC_0257"
                     /note="Hemolysins and related proteins containing CBS
                     domains [General function prediction only]; Region: TlyC;
                     COG1253"
                     /db_xref="CDD:224173"
     misc_feature    288533..289066
                     /locus_tag="CTDLC_0257"
                     /note="Domain of unknown function DUF21; Region: DUF21;
                     pfam01595"
                     /db_xref="CDD:250731"
     misc_feature    289145..289426
                     /locus_tag="CTDLC_0257"
                     /note="The CBS domain, named after human CBS, is a small
                     domain originally identified in cystathionine
                     beta-synthase and is subsequently found in a wide range of
                     different proteins. CBS domains usually occur in tandem
                     repeats. They associate to form a so-called...; Region:
                     CBS_pair; cl15354"
                     /db_xref="CDD:265675"
     misc_feature    289514..289714
                     /locus_tag="CTDLC_0257"
                     /note="Transporter associated domain; Region: CorC_HlyC;
                     smart01091"
                     /db_xref="CDD:215020"
     gene            complement(289730..290854)
                     /gene="nifS"
                     /locus_tag="CTDLC_0258"
                     /db_xref="GeneID:12387742"
     CDS             complement(289730..290854)
                     /gene="nifS"
                     /locus_tag="CTDLC_0258"
                     /codon_start=1
                     /transl_table=11
                     /product="NifS protein"
                     /protein_id="YP_005812189.1"
                     /db_xref="GI:385244345"
                     /db_xref="GeneID:12387742"
                     /translation="MTIYLDTNASALLEPGVLMCLHSLFIGEGGFGNPSSVHSFGKKT
                     KKLVKETSTLIEKALGFSHCRVIYTSGATESLNLAIQNIPTGSHVITSSMEHPAVIEP
                     LKQAKLSVTYLDPIPGECVVSLEQIKEAVQSDTSAIVLGWVNSEVGVRIDLEAIAEFA
                     KERQLLLIVDATAIVGKEVIHIPEGVSMVAFSGHKFHALSGIGVLLTSPKIKISPIIS
                     GGGQQGGIRSGTEHIHGIASLRYIFSKLLVEQPAIAQTMRSYRDLFESRIQETFPECI
                     VHCQDKPRVSNLSAIAFPGLEGEVMQIALDLEGVACGYGSACSSGATTVFKSLTVMKV
                     PQDLAVATLRFSFSYLLSEEEILTAARRVIRVVKHLQQYA"
     misc_feature    complement(289733..290854)
                     /gene="nifS"
                     /locus_tag="CTDLC_0258"
                     /note="Cysteine sulfinate desulfinase/cysteine desulfurase
                     and related enzymes [Amino acid transport and metabolism];
                     Region: NifS; COG1104"
                     /db_xref="CDD:224029"
     misc_feature    complement(order(290270..290272,290279..290281,
                     290336..290338,290345..290347,290429..290431,
                     290627..290629,290636..290641))
                     /gene="nifS"
                     /locus_tag="CTDLC_0258"
                     /note="pyridoxal 5'-phosphate binding pocket [chemical
                     binding]; other site"
                     /db_xref="CDD:99742"
     misc_feature    complement(290270..290272)
                     /gene="nifS"
                     /locus_tag="CTDLC_0258"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99742"
     gene            complement(290860..291624)
                     /gene="yloO"
                     /locus_tag="CTDLC_0259"
                     /db_xref="GeneID:12387743"
     CDS             complement(290860..291624)
                     /gene="yloO"
                     /locus_tag="CTDLC_0259"
                     /EC_number="3.1.3.16"
                     /codon_start=1
                     /transl_table=11
                     /product="Protein phosphatase 2C"
                     /protein_id="YP_005812190.1"
                     /db_xref="GI:385244346"
                     /db_xref="GeneID:12387743"
                     /translation="MGGEGVMIVADFEYFGLSDVGLVRHNNEDFWQVNYDSQLIAIAD
                     GMGGHRAGEVASYEAVGNLMQLVDLHKVDLERFGDEQYKESIKTIVSEINLLIYRQGL
                     SNEQFKGMGTTLSCMQFRRGKAWLFHVGDCRVYRLRNKMLERLTEDHSLANHLASRYG
                     LSKQSVKRYPGRNVLTNVLGSRPHVSLDIREMSYEKEDLFVFCSDGLTSAVSDHDMLD
                     ILTQTTTLEEGGNILISLANSRGGRDNATVILVRMR"
     misc_feature    complement(290869..291585)
                     /gene="yloO"
                     /locus_tag="CTDLC_0259"
                     /note="Serine/threonine phosphatases, family 2C, catalytic
                     domain; The protein architecture and deduced catalytic
                     mechanism of PP2C phosphatases are similar to the PP1,
                     PP2A, PP2B family of protein Ser/Thr phosphatases, with
                     which PP2C shares no sequence...; Region: PP2Cc; cd00143"
                     /db_xref="CDD:238083"
     misc_feature    complement(order(290893..290895,291010..291012,
                     291487..291495,291538..291543,291553..291555))
                     /gene="yloO"
                     /locus_tag="CTDLC_0259"
                     /note="active site"
                     /db_xref="CDD:238083"
     gene            291929..292420
                     /locus_tag="CTDLC_0260"
                     /db_xref="GeneID:12387744"
     CDS             291929..292420
                     /locus_tag="CTDLC_0260"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812191.1"
                     /db_xref="GI:385244347"
                     /db_xref="GeneID:12387744"
                     /translation="MTTWTLNHNNLTKFLTHAQLEPSLERESGLIYITVPAGEHELPL
                     FFVIRNEGEVLQLVCYFPYQIQQNQRDTTARLLHLVNRDIDIPGFGMDEEQNIIFYRL
                     VIPCLKGEINEDLLRVYIDTIKLICDSFFHAIGLISTGNMDLDELKKQAKLENNQSDQ
                     LEP"
     misc_feature    291929..292405
                     /locus_tag="CTDLC_0260"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG5465"
                     /db_xref="CDD:227752"
     gene            292429..293127
                     /gene="dnaQ_1"
                     /locus_tag="CTDLC_0261"
                     /db_xref="GeneID:12387745"
     CDS             292429..293127
                     /gene="dnaQ_1"
                     /locus_tag="CTDLC_0261"
                     /EC_number="2.7.7.7"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="YP_005812192.1"
                     /db_xref="GI:385244348"
                     /db_xref="GeneID:12387745"
                     /translation="MPALIFYDTETTGTQIDKDRIVELAAYNGTTSESFQTLVNPEIP
                     IPAEATKIHGITTAEVADAPRFPEAYQKFIEFCGTDNILVAHNNNAFDYPLLVRECRR
                     HGLSEPQLRTIDSLKWAKKYRTDLPQHSLQYLRQVYGFEENQAHRALDDVITLYRVFS
                     ALVGDLSPDQIYDLLNETCHPRIFKMPFGKYKGKPLSEVPSSYIAWLQKGDYLLQPEN
                     KEIKAAIEAYQQLK"
     misc_feature    292429..293124
                     /gene="dnaQ_1"
                     /locus_tag="CTDLC_0261"
                     /note="DNA polymerase III subunit epsilon; Validated;
                     Region: PRK06309"
                     /db_xref="CDD:180524"
     misc_feature    292441..292905
                     /gene="dnaQ_1"
                     /locus_tag="CTDLC_0261"
                     /note="DEDDh 3'-5' exonuclease domain family; Region:
                     DEDDh; cd06127"
                     /db_xref="CDD:176648"
     misc_feature    order(292450..292461,292465..292467,292684..292689,
                     292693..292695,292699..292704,292864..292866,
                     292879..292881)
                     /gene="dnaQ_1"
                     /locus_tag="CTDLC_0261"
                     /note="active site"
                     /db_xref="CDD:176648"
     misc_feature    order(292450..292461,292465..292467,292684..292689,
                     292693..292695,292699..292701,292864..292866,
                     292879..292881)
                     /gene="dnaQ_1"
                     /locus_tag="CTDLC_0261"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:176648"
     misc_feature    order(292450..292452,292456..292458,292702..292704,
                     292864..292866,292879..292881)
                     /gene="dnaQ_1"
                     /locus_tag="CTDLC_0261"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176648"
     misc_feature    292981..>293058
                     /gene="dnaQ_1"
                     /locus_tag="CTDLC_0261"
                     /note="Protein of unknown function (DUF3820); Region:
                     DUF3820; cl01411"
                     /db_xref="CDD:242489"
     gene            293124..293894
                     /locus_tag="CTDLC_0262"
                     /db_xref="GeneID:12387746"
     CDS             293124..293894
                     /locus_tag="CTDLC_0262"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812193.1"
                     /db_xref="GI:385244349"
                     /db_xref="GeneID:12387746"
                     /translation="MTFSAAFSPCPNDIFLFRSFLEKHKGFPSLRQIMIADISSLNYY
                     ALETRFPLIKISASLYPQIADSYDVLNVGTTLGYKIGPLILSRQLDSPLKSLATPGET
                     TTAHALCRLFYPRAELVPMKYHEIIPAILSNRVDGGAVIHEERFSFPKDLCIVEDLGQ
                     LWEKTWHLPLPLGCIVISKKVSDDDSYLLNHALQESLKKSLTDSALAIQKASEYSRDK
                     NPTTIQHFIDTYVTEETFNLSSIGRQAFSTLWTACRNV"
     misc_feature    293124..293879
                     /locus_tag="CTDLC_0262"
                     /note="Predicted periplasmic solute-binding protein
                     [General function prediction only]; Region: COG2107"
                     /db_xref="CDD:225018"
     gene            293887..294477
                     /locus_tag="CTDLC_0263"
                     /db_xref="GeneID:12387747"
     CDS             293887..294477
                     /locus_tag="CTDLC_0263"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812194.1"
                     /db_xref="GI:385244350"
                     /db_xref="GeneID:12387747"
                     /translation="MFKLLLIFADPAEAARTLSLFPFSLNKENFYTYHTENVLLDVMV
                     LKTWGYRGVVQALSPPPSGYDLWINAGFAGAGNPNIPLLKTYTITSVKELTPTTSVEE
                     ELEVTPIPRLPLAQLTSVRSPYRDGFHEHLQLVDMEGFFIAKQASLVACPCSMIKVSS
                     DYTTREGQDFLKNNKVKLSQKLAEAIFPIYSSFIDV"
     misc_feature    <294079..294369
                     /locus_tag="CTDLC_0263"
                     /note="Phosphorylase superfamily; Region: PNP_UDP_1;
                     cl00303"
                     /db_xref="CDD:260338"
     gene            complement(294498..296438)
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /db_xref="GeneID:12387748"
     CDS             complement(294498..296438)
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="YP_005812195.1"
                     /db_xref="GI:385244351"
                     /db_xref="GeneID:12387748"
                     /translation="MKLLLKAILRHKKHLVLFGFSLLSILGLTITSQAEIFSLGLIAK
                     TGPDTFLLFGKQEGASLVKRKELSKDQLLEQWDNIVGEGDTLSLPQANAYIAKHSGGS
                     QSITKRLSAYLSGCFDFSRLQCLALFLVVVAILKSTTLFFQRFLAQLIAIRVSCSLRK
                     DYFLALQTLPMTFFHAHDMGNLSSRVIADSSMIALAINALMVNYIQAPITMTLALVVC
                     LSISWKFCACVCLAFPIFILPIVIIAKKVKALAKRIQKSQDHSAAALLDFLLGILTVK
                     VFRTEQFSFSKYCQKNDEIARLEERSAAYSLIPRPLLHTIASLFFALVIMIGLYHFHI
                     PPEELVVFCGLLYLIYDPIKKFADENANIMWGCAAAERFYEVLDLAKQQSNVSEKLNE
                     FQGLQHSIQFCNVSFGYVEDSPVLSDFNLVLKKGEAIGIVGPTGSGKSTIAKLLPRLY
                     EVSHGELLIDSLPIRSYCKNSLRKHIGCVLQHPFLFYDTVWNNLTCGRTFSEEEVFHA
                     LKQAHAYEFVSKMPQGVHSLLEESSKNLSGGQQQRLTIARALLHNTSILLLDEATSAL
                     DAISENYVKEIVGQLKGRCTQIIIAHKLSTLEYVDRIVYLEQGKKIAEGTKEELLDSC
                     PAFQRMWVLSGAKDWELNAVVK"
     misc_feature    complement(294546..296090)
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /note="ABC-type multidrug transport system, ATPase and
                     permease components [Defense mechanisms]; Region: MdlB;
                     COG1132"
                     /db_xref="CDD:224055"
     misc_feature    complement(295440..296066)
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /note="ABC transporter transmembrane region; Region:
                     ABC_membrane; pfam00664"
                     /db_xref="CDD:250039"
     misc_feature    complement(294546..295241)
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:266551"
     misc_feature    complement(295119..295142)
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(order(294663..294665,294756..294761,
                     294996..294998,295116..295124,295128..295133))
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(294996..295007)
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(294804..294833)
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(294756..294773)
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(294738..294749)
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    complement(294657..294677)
                     /gene="msbA"
                     /locus_tag="CTDLC_0264"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            complement(296404..297378)
                     /gene="accA"
                     /locus_tag="CTDLC_0265"
                     /db_xref="GeneID:12387749"
     CDS             complement(296404..297378)
                     /gene="accA"
                     /locus_tag="CTDLC_0265"
                     /EC_number="6.4.1.2"
                     /codon_start=1
                     /transl_table=11
                     /product="Acetyl-coenzyme A carboxylase carboxyl
                     transferase subunit alpha"
                     /protein_id="YP_005812196.1"
                     /db_xref="GI:385244352"
                     /db_xref="GeneID:12387749"
                     /translation="MELLPHEKQVVEYEKTIAEFKEKNKENSLLSSSEIQKLDKRLDR
                     LKEKIYSDLTPWERVQICRHPSRPRTVNYIEGMCEEFVELCGDRTFRDDPAVVGGFAK
                     IQGQRFMLIGQEKGCDTKSRMHRNFGMLCPEGFRKALRLAKMAEKFGLPIIFLVDTPG
                     AFPGLTAEERGQGWAIATNLFELARLATPIIVIVIGEGCSGGALGMAIGDVVAMLEHS
                     YYSVISPEGCASILWKDPKKNSDAAAMLKMHGEDLKGFAIVDAVIKEPIGGAHHNPAA
                     TYRSVQEYVLQEWLKLKDLPVEELLEKRYQKFRTIGLYETSSESDSEA"
     misc_feature    complement(296428..297378)
                     /gene="accA"
                     /locus_tag="CTDLC_0265"
                     /note="acetyl-CoA carboxylase carboxyltransferase subunit
                     alpha; Validated; Region: PRK05724"
                     /db_xref="CDD:235580"
     gene            complement(297511..298788)
                     /locus_tag="CTDLC_0266"
                     /db_xref="GeneID:12387750"
     CDS             complement(297511..298788)
                     /locus_tag="CTDLC_0266"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812197.1"
                     /db_xref="GI:385244353"
                     /db_xref="GeneID:12387750"
                     /translation="MLSIVESGFSVSKLDSKFPQDYFLPLDVFLLTMLVESQLGLEDV
                     LEAFSERNFDIQSKSFIESFQDKKLRRTVIQRFLHHPLLHIHDIARAAYLLAALEEGV
                     DLGYQFLCMHQTQSGAALLFRRAGFLWGGLPYPGEHAEMAMLLSRIAEFYDTSYEQVQ
                     KMIAFQHALFSHERNIFPALWSQEGSRSNQEKTAVSKLLFCQKEARIEDQFTLTDMSL
                     GFWMRRTPSFSAYVSGSGCKSGVGAFLIGDVGVLNYGPCVGDPGECLGFGLCGQVKEF
                     SCQEKDEEVSISFAGALSQPSSRRTGFSYLQDALFSTNSCYCIDITEQKCHVASSLDR
                     ENQDAFFAIFCKGSQCQVCNGPKLRTGSPDSYKGPAYDVLIKGEKETVRILSSSPHME
                     IFSLQGKDRFWGSNFLINLPYTQNSINILFEKA"
     gene            complement(298810..299112)
                     /gene="ihfA"
                     /locus_tag="CTDLC_0267"
                     /db_xref="GeneID:12387751"
     CDS             complement(298810..299112)
                     /gene="ihfA"
                     /locus_tag="CTDLC_0267"
                     /codon_start=1
                     /transl_table=11
                     /product="Integration host factor beta-subunit"
                     /protein_id="YP_005812198.1"
                     /db_xref="GI:385244354"
                     /db_xref="GeneID:12387751"
                     /translation="MATMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVQGDR
                     LEFRDFGVLQVVERKPKVGRNPKNAAVPIHIPARRAVKFTPGKRMKRLIETPTKSS"
     misc_feature    complement(298837..299103)
                     /gene="ihfA"
                     /locus_tag="CTDLC_0267"
                     /note="Beta subunit of integration host factor (IHFB);
                     Region: IHF_B; cd13836"
                     /db_xref="CDD:259858"
     misc_feature    complement(order(298846..298848,298858..298860,
                     298864..298866,298870..298872,298876..298881,
                     298963..298965,298969..298986,298996..299025,
                     299029..299037,299044..299046,299056..299058,
                     299065..299067,299074..299079,299086..299088,
                     299095..299097))
                     /gene="ihfA"
                     /locus_tag="CTDLC_0267"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:259858"
     misc_feature    complement(order(298852..298857,298861..298863,
                     298867..298869,298936..298941,298945..298947,
                     298963..298965,298969..298977,299092..299097))
                     /gene="ihfA"
                     /locus_tag="CTDLC_0267"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:259858"
     gene            complement(299332..300111)
                     /gene="amiA"
                     /locus_tag="CTDLC_0268"
                     /db_xref="GeneID:12387752"
     CDS             complement(299332..300111)
                     /gene="amiA"
                     /locus_tag="CTDLC_0268"
                     /EC_number="3.5.1.28"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="YP_005812199.1"
                     /db_xref="GI:385244355"
                     /db_xref="GeneID:12387752"
                     /translation="MRGIRSSNIRRLSLMIERLCVKPWQPFVNLTLLLLLLTLSSPVS
                     CFADAAGIPKVSRNELIVIDPGHGGKDEGTADKELRYKEKTLALSIALSVQGCLRRMG
                     YKTIMTRATDVYVDLSKRAAIANQNKADVFVSIHCNHSSNTSALGTEIYFYNDKNILR
                     TRKSESLGKSILAFMQKNGALRERKVKEGNFAVIRETTMPAVLVETGFLSNSKERAAL
                     LDARYRSHLAKGIAEGIHAFILNRQVDKTVSVSSGAKKVHK"
     misc_feature    complement(299386..299955)
                     /gene="amiA"
                     /locus_tag="CTDLC_0268"
                     /note="N-acetylmuramoyl-L-alanine amidase [Cell envelope
                     biogenesis, outer membrane]; Region: AmiC; COG0860"
                     /db_xref="CDD:223929"
     misc_feature    complement(299407..299931)
                     /gene="amiA"
                     /locus_tag="CTDLC_0268"
                     /note="N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA
                     (also known as peptidoglycan aminohydrolase, NAMLA
                     amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC
                     3.5.1.28) is an autolysin that hydrolyzes the amide bond
                     between N-acetylmuramoyl and L-amino...; Region:
                     MurNAc-LAA; cd02696"
                     /db_xref="CDD:119407"
     misc_feature    complement(order(299497..299499,299704..299706,
                     299863..299865,299911..299913))
                     /gene="amiA"
                     /locus_tag="CTDLC_0268"
                     /note="active site"
                     /db_xref="CDD:119407"
     misc_feature    complement(order(299704..299706,299863..299865,
                     299911..299913))
                     /gene="amiA"
                     /locus_tag="CTDLC_0268"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:119407"
     gene            complement(300026..301477)
                     /gene="murE"
                     /locus_tag="CTDLC_0269"
                     /db_xref="GeneID:12387753"
     CDS             complement(300026..301477)
                     /gene="murE"
                     /locus_tag="CTDLC_0269"
                     /EC_number="6.3.2.13"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoylalanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="YP_005812200.1"
                     /db_xref="GI:385244356"
                     /db_xref="GeneID:12387753"
                     /translation="MHLDQLLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQG
                     QFCNGNDYSSQAVANGAIAVLSSLYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHL
                     DVIGITGTNGKTTVSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQK
                     YFAEMVKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAK
                     KQFFASLPEKGIAVVNLDCEYAPSFLNGSQARAVSYAIHQEADYRADRLKLYSSGSSY
                     DIWYQGQVFPCETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDP
                     ILLGPFPVYIDYAHTPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVS
                     EHYGFSFVTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVL
                     VAGKGHEGYQIFKHQTIVFDDREVVCEALAALC"
     misc_feature    complement(300062..301420)
                     /gene="murE"
                     /locus_tag="CTDLC_0269"
                     /note="UDP-N-acetylmuramyl-tripeptide synthetase; Region:
                     murE; TIGR01085"
                     /db_xref="CDD:233265"
     misc_feature    complement(301193..301414)
                     /gene="murE"
                     /locus_tag="CTDLC_0269"
                     /note="Mur ligase family, catalytic domain; Region:
                     Mur_ligase; pfam01225"
                     /db_xref="CDD:250458"
     misc_feature    complement(300557..301159)
                     /gene="murE"
                     /locus_tag="CTDLC_0269"
                     /note="Mur ligase middle domain; Region: Mur_ligase_M;
                     pfam08245"
                     /db_xref="CDD:254689"
     misc_feature    complement(300236..300496)
                     /gene="murE"
                     /locus_tag="CTDLC_0269"
                     /note="Mur ligase family, glutamate ligase domain; Region:
                     Mur_ligase_C; pfam02875"
                     /db_xref="CDD:251584"
     gene            complement(301800..303743)
                     /gene="pbp3"
                     /locus_tag="CTDLC_0270"
                     /db_xref="GeneID:12387754"
     CDS             complement(301800..303743)
                     /gene="pbp3"
                     /locus_tag="CTDLC_0270"
                     /codon_start=1
                     /transl_table=11
                     /product="Penicillin-binding protein"
                     /protein_id="YP_005812201.1"
                     /db_xref="GI:385244357"
                     /db_xref="GeneID:12387754"
                     /translation="MNHRRQLTLIVVGVLSLYALLIVRYYKIQICDGERWAVEAANQH
                     EFRVKDPFQRGTFFANTSLRKGEKEQFHPLAIDVTKFHLCLDAVVIPEEYRDEIARMV
                     VVMVGEGDYQSIRSEFDRKSRYRKLYVSLDISIRDRILSWWKPYAVKHKIPSNALFFI
                     SDYQRSYPFGKLLGQVLHTLREIKDEKSGEAFPTGGLEAYFNRLLEGENGERKLLRSP
                     LNRLDVDKVTKIPRDGSDIYLTIDANVQTIAEQEIALGVLEAKARSGRAIVLNSHTGE
                     ILALAQYPFFNPREYREYFNCNDRIEDTKVKAVSDVFEPGSIMKPITVAIALLANEEM
                     QKRAGENLFDPYEPLDVSRRVFPGRQKMPLKDIVSNRYLNMYMAIQKSSNVYMAQLAD
                     RIVQKLGADWYEQRLQDFGFGKRTGIELPAEAVGLVPSRKRFHKNGSPEWSLSTPYSL
                     AMGYNLLATSMQMVQAYAVFGNGGFLIRPTLVRKIVSPSGEEKILSSNPKKIRVLSEK
                     IVADVVRAMRFTTCLGGTGIRAATKGYSSAGKTGTTEKLVDGKYDKKRHIASFIGLTP
                     IAALSDTAVPLVILVSIDDPAYGVREDRTKNYMGGRCAAPVFSRIASRVLPYLGVPLD
                     EQLHTYREEVSQLKLLYEEWNRK"
     misc_feature    complement(301866..303743)
                     /gene="pbp3"
                     /locus_tag="CTDLC_0270"
                     /note="Cell division protein FtsI/penicillin-binding
                     protein 2 [Cell envelope biogenesis, outer membrane];
                     Region: FtsI; COG0768"
                     /db_xref="CDD:223839"
     misc_feature    complement(303081..303593)
                     /gene="pbp3"
                     /locus_tag="CTDLC_0270"
                     /note="Penicillin-binding Protein dimerization domain;
                     Region: PBP_dimer; pfam03717"
                     /db_xref="CDD:252119"
     misc_feature    complement(301911..302951)
                     /gene="pbp3"
                     /locus_tag="CTDLC_0270"
                     /note="Penicillin binding protein transpeptidase domain;
                     Region: Transpeptidase; pfam00905"
                     /db_xref="CDD:250215"
     gene            complement(303730..304017)
                     /locus_tag="CTDLC_0271"
                     /db_xref="GeneID:12387755"
     CDS             complement(303730..304017)
                     /locus_tag="CTDLC_0271"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812202.1"
                     /db_xref="GI:385244358"
                     /db_xref="GeneID:12387755"
                     /translation="MNRYRFSRLLVCLSLLCCALYRYIDKQNDLTKLRLEIPCLWAQL
                     RQIEQENVALSFLLEKLESPEHLLQIAFLPEYQYLEYLSEEKISVLAYESP"
     gene            complement(304017..304919)
                     /gene="mraW"
                     /locus_tag="CTDLC_0272"
                     /db_xref="GeneID:12387756"
     CDS             complement(304017..304919)
                     /gene="mraW"
                     /locus_tag="CTDLC_0272"
                     /EC_number="2.1.1.-"
                     /note="S-adenosyl-methyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="MraW"
                     /protein_id="YP_005812203.1"
                     /db_xref="GI:385244359"
                     /db_xref="GeneID:12387756"
                     /translation="MTDSIPHIPVLVKESLSLFRDRNPVVFCDVTVGAGGHAEAFLTE
                     FPSIERYDGSDRDLSALALSENRLLPFKDRVRLRHASFEEVDTLTSDGTYDGVLADLG
                     VSSMQLNNLERGFSFQGEDHPLDMRMDTSRGMTASEVLNSLREEEIGEIFRNYGEEPL
                     WRSAAAAVVHFRKKKKILTVKDLKDATSGVFPSYRLRKKIHPLTLIFQALRIYVNQEG
                     AQLKVLLDSAFRWLRPGGRLAVISFCSLDDRPVKWAFREAEARGLGKILTKKVIMPSY
                     EETRMNPRSRSAKLRCFEKSFEDK"
     misc_feature    complement(304035..304910)
                     /gene="mraW"
                     /locus_tag="CTDLC_0272"
                     /note="MraW methylase family; Region: Methyltransf_5;
                     pfam01795"
                     /db_xref="CDD:250872"
     gene            305197..305763
                     /locus_tag="CTDLC_0273"
                     /db_xref="GeneID:12387757"
     CDS             305197..305763
                     /locus_tag="CTDLC_0273"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812204.1"
                     /db_xref="GI:385244360"
                     /db_xref="GeneID:12387757"
                     /translation="MVEIFNYSTSVYEKHSSTNKLVNDFRKEIQMEGAAIRDIAKHAQ
                     ILDMTPKPSALSTLMQTNKKTCWASFSPPTNFHKQRFSTPYLVPSLGSPDKQDQDMEK
                     ISSYLKVLTRGKFSYRSTADTLSRKNKRSSDQKRNGQHFEQEELEVEEEVLVREGTVL
                     LRALDQGIKSSNLLIDYVISRIFQFVQG"
     gene            305770..306189
                     /locus_tag="CTDLC_0274"
                     /db_xref="GeneID:12387758"
     CDS             305770..306189
                     /locus_tag="CTDLC_0274"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812205.1"
                     /db_xref="GI:385244361"
                     /db_xref="GeneID:12387758"
                     /translation="MLDNEWKAILGWGDEELEELRISGYSFLRQGHYQKAILFFEALV
                     ILDPLSVYDFQTLGGLYLQISENTKALYVLDQALRMQGDHLPTLLNKTKALFCLGRIE
                     EASAIASYLTSCPDPIIADDAEALLLSYVKPPLVAVR"
     misc_feature    305839..306081
                     /locus_tag="CTDLC_0274"
                     /note="Tetratricopeptide repeat domain; typically contains
                     34 amino acids
                     [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
                     X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
                     a variety of organisms including bacteria, cyanobacteria,
                     yeast, fungi; Region: TPR; cd00189"
                     /db_xref="CDD:238112"
     misc_feature    order(305839..305841,305875..305877,305887..305889,
                     305896..305898,305941..305943,305977..305979,
                     305989..305991,305998..306000,306043..306045,
                     306079..306081)
                     /locus_tag="CTDLC_0274"
                     /note="TPR motif; other site"
                     /db_xref="CDD:238112"
     misc_feature    order(305842..305847,305932..305937,305941..305946,
                     305953..305958,306034..306039,306046..306051,
                     306058..306063)
                     /locus_tag="CTDLC_0274"
                     /note="binding surface"
                     /db_xref="CDD:238112"
     gene            306339..307799
                     /gene="dnaA"
                     /locus_tag="CTDLC_0275"
                     /db_xref="GeneID:12387759"
     CDS             306339..307799
                     /gene="dnaA"
                     /locus_tag="CTDLC_0275"
                     /note="Chromosomal replication initiator protein"
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase DnaA"
                     /protein_id="YP_005812206.1"
                     /db_xref="GI:385244362"
                     /db_xref="GeneID:12387759"
                     /translation="MLINSNATFAIFSRRRVHYRILNSSSDKENAMLTCNDCSTWEQF
                     VNYIKTRCSKTAFENWIAPIQVLEESSEKIRLEIPNIFVQSYLLDNYKKDLCSFVPLD
                     AEGNPALEFVVAEIKRSSPLVTPSIAKPATEVSEENKDFQLKLNGAYRFDNFIEGPSN
                     QFVKSAALGIAARPGRSYNPLFIHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEA
                     FINDLVHHLRVKSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTFETLIHLSKQ
                     IVVTSDKPPGQLKLSERIIARMEWGLVAHVGVPDLETRVAILQHKAEQKGLNIPNEIA
                     FYIADHVYGNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELFRAPSKQKVSVESI
                     LKSVATVFQVKIQDLKGSSRAKNVPLARQVAMYLAKTLITDSLVAIGAAFGKTHSTVL
                     YACKTIEQKIEKDALLKNQISLCKNNIAIDSPQHFV"
     misc_feature    306444..307769
                     /gene="dnaA"
                     /locus_tag="CTDLC_0275"
                     /note="chromosomal replication initiation protein;
                     Reviewed; Region: dnaA; PRK00149"
                     /db_xref="CDD:234667"
     misc_feature    306453..306623
                     /gene="dnaA"
                     /locus_tag="CTDLC_0275"
                     /note="DnaA N-terminal domain; Region: DnaA_N; pfam11638"
                     /db_xref="CDD:256535"
     misc_feature    306810..307244
                     /gene="dnaA"
                     /locus_tag="CTDLC_0275"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    306891..306914
                     /gene="dnaA"
                     /locus_tag="CTDLC_0275"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(306894..306917,307080..307082,307179..307181)
                     /gene="dnaA"
                     /locus_tag="CTDLC_0275"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    307068..307085
                     /gene="dnaA"
                     /locus_tag="CTDLC_0275"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    307215..307217
                     /gene="dnaA"
                     /locus_tag="CTDLC_0275"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    307503..307769
                     /gene="dnaA"
                     /locus_tag="CTDLC_0275"
                     /note="C-terminal domain of bacterial DnaA proteins. The
                     DNA-binding C-terminal domain of DnaA contains a
                     helix-turn-helix motif that specifically interacts with
                     the DnaA box, a 9-mer motif that occurs repetitively in
                     the replication origin oriC. Multiple...; Region:
                     Bac_DnaA_C; cd06571"
                     /db_xref="CDD:119330"
     misc_feature    order(307572..307574,307596..307601,307620..307622,
                     307638..307646,307668..307682,307689..307691,
                     307698..307703)
                     /gene="dnaA"
                     /locus_tag="CTDLC_0275"
                     /note="DnaA box-binding interface [nucleotide binding];
                     other site"
                     /db_xref="CDD:119330"
     gene            complement(308394..309053)
                     /locus_tag="CTDLC_0277"
                     /db_xref="GeneID:12387760"
     CDS             complement(308394..309053)
                     /locus_tag="CTDLC_0277"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812207.1"
                     /db_xref="GI:385244363"
                     /db_xref="GeneID:12387760"
                     /translation="MSERKVENVTRSKRNKLLKFLRIKNSVVYRILIFVIRQIFPVLC
                     CICKAPGREICLSCWRRCSKRIYDNRCTRCLETLNIGEISAICSTCSALSPHLSLYLY
                     ELMPETLALYRCACLGNRSGEQSFSKAALRALILNQCSIDRIIFSSKDIERNIVESIA
                     RYLKVPCEKRSWYRKRKALDSAENICILSIYPFNRRVREEIFSQVPDNAIFMSLFPLA
                     H"
     gene            309007..310566
                     /gene="nqr2"
                     /locus_tag="CTDLC_0278"
                     /db_xref="GeneID:12387761"
     CDS             309007..310566
                     /gene="nqr2"
                     /locus_tag="CTDLC_0278"
                     /EC_number="1.6.5.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit B"
                     /protein_id="YP_005812208.1"
                     /db_xref="GI:385244364"
                     /db_xref="GeneID:12387761"
                     /translation="MLRFERVTFSTFLSDTMLEKLVDSLWKICRKSKFQHMTPIADAV
                     DTFCFEPLHTPSSPPFVRDAVDVKRWMMLVVIALMPTIFAAVWNSGLQALVYQSSDPR
                     IMEAFLHISGFKSYFSFVSQEIGIGSVLFAGCKIFLPLLFISYAVGGTCEVLFAIIRK
                     HKIAEGLLVTGMLYPLILPPTIPYWMAALGIAFGVVMGKELFGGTGMNILNPALTGRA
                     FLFFTFPAKMSGDVWVGSNPSRIKESLATMSSLAEKSHFDGFSQSTCLQVLNSTPPSV
                     KRVHIDAIASNILNLEHVPTQDVLQTQFATWAESYPGLTVDQLSLEQLQNFVTTPITE
                     GGLGLLPAHFDSACSLTEAVYGIGKFSTGNLFFGNILGSLGETSTVACLLGAGLLLLT
                     GIASWRTMLSFGLSAFFFAWFFKIMSILTTGNAGAWAPAKFFIPAYRHLCIGGLAFGL
                     VFMATDPVSSPAMKLAKWLYGAFIGFLTILIRLINPAYPEGVMLAILLGNVFAPLFDN
                     IALKQYRQRRI"
     misc_feature    309055..310563
                     /gene="nqr2"
                     /locus_tag="CTDLC_0278"
                     /note="Na(+)-translocating NADH-quinone reductase subunit
                     B; Provisional; Region: PRK01024"
                     /db_xref="CDD:179207"
     gene            310570..311520
                     /gene="nqr3"
                     /locus_tag="CTDLC_0279"
                     /db_xref="GeneID:12387762"
     CDS             310570..311520
                     /gene="nqr3"
                     /locus_tag="CTDLC_0279"
                     /EC_number="1.6.5.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="YP_005812209.1"
                     /db_xref="GI:385244365"
                     /db_xref="GeneID:12387762"
                     /translation="MASKSRHYLNQPWYIILFIFVLSLIAGTLLSSVYYVLAPIQQQA
                     AEFDRNQQMLMAAQVISSDNTFQVYEKGDWHPALYNTKKQLLEISSTPPKVTVTTLSS
                     YFQNFVRVLLTDTQGNLSSFEDHNLNLEEFLSQPTPVIHGLALYVVYAILHNDAASSK
                     LSASQVAKNPTAIESIVLPIEGFGLWGPIYGFLALEKDGNTVLGTSWYQHGETPGLGA
                     NIANPQWQKNFRGKKVFLVSASGETDFAKTTLGLEVIKGSVSAALGDSPKAASSIDGI
                     SGATLTCNGVTESFSHSLAPYRALLTFFANSKPSGESHDH"
     misc_feature    310570..311514
                     /gene="nqr3"
                     /locus_tag="CTDLC_0279"
                     /note="Na+-transporting NADH:ubiquinone oxidoreductase,
                     subunit NqrC [Energy production and conversion]; Region:
                     NqrC; COG2869"
                     /db_xref="CDD:225424"
     misc_feature    310594..311478
                     /gene="nqr3"
                     /locus_tag="CTDLC_0279"
                     /note="NADH:ubiquinone oxidoreductase,
                     Na(+)-translocating, C subunit; Region: nqrC; TIGR01938"
                     /db_xref="CDD:233647"
     gene            311498..312151
                     /gene="nqr4"
                     /locus_tag="CTDLC_0280"
                     /db_xref="GeneID:12387763"
     CDS             311498..312151
                     /gene="nqr4"
                     /locus_tag="CTDLC_0280"
                     /EC_number="1.6.5.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit D"
                     /protein_id="YP_005812210.1"
                     /db_xref="GI:385244366"
                     /db_xref="GeneID:12387763"
                     /translation="MESLMTTNKSYLTYFTDALWINNQPLIAILGICSALAVTTTVTT
                     ALTMGFAVSFVTGCSSFVVSLLRKITPESVRMIAQLIIISLFVILIDQFLKAFFFTIS
                     KTLSVFVGLIITNCIVMGRAESMARHVSPIPAFLDGLGSGLGYGWVLVCISIIRELFG
                     FGTILGFRVIPEILYTSAAHPDGYENLGLMVLAPSAFFLLGIMIWIVNIIRAPKTKR"
     misc_feature    311510..312148
                     /gene="nqr4"
                     /locus_tag="CTDLC_0280"
                     /note="Na+-transporting NADH:ubiquinone oxidoreductase,
                     subunit NqrD [Energy production and conversion]; Region:
                     NqrD; COG1347"
                     /db_xref="CDD:224266"
     gene            312157..312891
                     /gene="nqr5"
                     /locus_tag="CTDLC_0281"
                     /db_xref="GeneID:12387764"
     CDS             312157..312891
                     /gene="nqr5"
                     /locus_tag="CTDLC_0281"
                     /EC_number="1.6.5.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit E"
                     /protein_id="YP_005812211.1"
                     /db_xref="GI:385244367"
                     /db_xref="GeneID:12387764"
                     /translation="MWLGDYSLLNLLGIFLQATFIQNILLSTFLGMCSYLACSSRLST
                     ANGLGMSVALVLTITGSINWLVHYFITKPGALAWLSPALANIDLSFLELIMFIVVIAA
                     FTQILEVLLERFSRNLYLALGIFLPLIAVNCAILGGVLFGITRNYPFLPMVVFSLGSG
                     CGWWLAIVLFATIREKLAYSDVPQHLRGTGISFITTGLMAMAFMGLTGIDISKPTTSK
                     PAFVTNIATDSPQPNTHSSSEEPKAS"
     misc_feature    312157..312870
                     /gene="nqr5"
                     /locus_tag="CTDLC_0281"
                     /note="Na(+)-translocating NADH-quinone reductase subunit
                     E; Provisional; Region: PRK01061"
                     /db_xref="CDD:234895"
     gene            complement(312915..313283)
                     /gene="gcsH"
                     /locus_tag="CTDLC_0282"
                     /db_xref="GeneID:12387765"
     CDS             complement(312915..313283)
                     /gene="gcsH"
                     /locus_tag="CTDLC_0282"
                     /codon_start=1
                     /transl_table=11
                     /product="Glycine cleavage system H protein"
                     /protein_id="YP_005812212.1"
                     /db_xref="GI:385244368"
                     /db_xref="GeneID:12387765"
                     /translation="MSRTIMKGKKYYSDYHVWIEPIHSRIVKLGLSSQMREHLGNILH
                     IDLPSLGAFIKEGEKLCILESSKSAIEVLSPVSGEVLEVNTALEDDILPVNNATESEG
                     WFVVLQLTEDFRSESFSLEP"
     misc_feature    complement(312963..313250)
                     /gene="gcsH"
                     /locus_tag="CTDLC_0282"
                     /note="Glycine cleavage H-protein. Glycine cleavage
                     H-proteins are part of the glycine cleavage system (GCS)
                     found in bacteria, archea and the mitochondria of
                     eukaryotes. GCS is a multienzyme complex consisting of 4
                     different components (P-, H-, T- and...; Region: GCS_H;
                     cd06848"
                     /db_xref="CDD:133457"
     misc_feature    complement(313083..313085)
                     /gene="gcsH"
                     /locus_tag="CTDLC_0282"
                     /note="lipoyl attachment site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:133457"
     gene            complement(313288..315360)
                     /locus_tag="CTDLC_0283"
                     /db_xref="GeneID:12387766"
     CDS             complement(313288..315360)
                     /locus_tag="CTDLC_0283"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812213.1"
                     /db_xref="GI:385244369"
                     /db_xref="GeneID:12387766"
                     /translation="MLAFFNKHQKKFIGLVIAGVCLSGVGVGVGQTVKKTNKLGSGKT
                     VYRTPLGRKYSEKEFLLLKHFLSNEAYPFTGNPREWNFLNEGLLTERFLTNKLGEKIF
                     LSIYKSGFPAFDKERSYEGYRRFDAPFISSEEVWKSSAPQLREAFHIFQQLTDPVSPE
                     GFAARVRLFLEEKKFPHYVLRQMLEYRRQMFNLPVDNSLVQGRDLRLFGYKNVKDWFG
                     DKYISSVTEAMLCFIDEQKKKVGMPSLKEARQDFYDKAQHAFARLSKHAEFNLTFEQL
                     VASFYAFMGVEESDFLSMYREILLYKKALLSLEGAVSFDYYPLQKFFSMGKDSVSVEL
                     FHLPDSLVFKDKEDLEAFETYLHLTAFPSAHVLDVPTKAFPIERVRRKAECLVGKRFA
                     VSYQSVKLSDLEKYVPMSQVYQWYQNPENFEEIVLEFPELETSSSLRDILNLRPAIVE
                     KAHSYVRKAILRADPERIQSELAKKERQEEELFLSIGKDHVLPGIQNGVRLANVLMQQ
                     DSVDSYTQDNEHFYSISVISRADKDEVLPYKEVLRKGLKKVLLEKYKAEERISRVLTH
                     LQEAFPNSQGQDLYQRRLVRFVKAFQTGKLAQGDLFGGLEKTMKTFSRGDQGAPQEFE
                     DMFALKEGQVSDVLFDLDKGPFYYTAISKSCCDYPVSLDKLLFAKSHLNEEFLRPYLE
                     EVFFHNPS"
     misc_feature    complement(313306..315357)
                     /locus_tag="CTDLC_0283"
                     /note="Chlamydial GcvH-like protein upstream region
                     protein; Region: near_not_gcvH; TIGR03076"
                     /db_xref="CDD:213771"
     gene            complement(315555..316979)
                     /locus_tag="CTDLC_0284"
                     /db_xref="GeneID:12387767"
     CDS             complement(315555..316979)
                     /locus_tag="CTDLC_0284"
                     /EC_number="3.1.4.4"
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D"
                     /protein_id="YP_005812214.1"
                     /db_xref="GI:385244370"
                     /db_xref="GeneID:12387767"
                     /translation="MKMAFLRKIFVFVACVVSLNGFAHTIAIPDGDKKAKVLIHDNGY
                     EMYEHLLAAISSAKYTVELCPCLAGGEILSTVLQRLEQRMEEVPALVSYILVQPTCID
                     DNDRKNLKTLQENYPDRFFYLFSDWPPYCNVFFPNVTESHTKLSIVDGKYIFIGGSNL
                     EDLQCSKGDVDLEVSDSPRAVIGGVLRPSAMRDQDVTIVSEEYGALLRKEFCAHYALW
                     KDFTQKLWLNKKLDDFRGIDPINLSIEKARSSFCAMIETSLCAVSVPLDKMHFIFSGP
                     DESNNTIAEEYVRLINQAQHSIRIAQMFFIPVAKIYDSLMAACWDRGVEIYLVTNGRT
                     DRSPEITRSYAWGNRINYFPLTFGSRPLLWERFLYSPSRASMKFYVSEFYVANTQLHK
                     KCMLVDDHILVIGSYNFGKKSNDCDYECIVVIDSKEAVSKAQVVFEKDLRLSKSVTHD
                     DIINWYFDPVHYCLGYLEQRYMPS"
     misc_feature    complement(315603..316973)
                     /locus_tag="CTDLC_0284"
                     /note="Phosphatidylserine/phosphatidylglycerophosphate/car
                     diolipin synthases and related enzymes [Lipid metabolism];
                     Region: Cls; COG1502"
                     /db_xref="CDD:224419"
     misc_feature    complement(<316494..316856)
                     /locus_tag="CTDLC_0284"
                     /note="Catalytic domain of phospholipase D superfamily
                     proteins; Region: PLDc_SF; cl15239"
                     /db_xref="CDD:265651"
     misc_feature    complement(order(316503..316505,316509..316511,
                     316548..316550,316554..316556))
                     /locus_tag="CTDLC_0284"
                     /note="putative active site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(316554..316556)
                     /locus_tag="CTDLC_0284"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(315627..316160)
                     /locus_tag="CTDLC_0284"
                     /note="Catalytic domain of phospholipase D superfamily
                     proteins; Region: PLDc_SF; cl15239"
                     /db_xref="CDD:265651"
     misc_feature    complement(order(315723..315725,315756..315758,
                     315762..315764,315801..315803,315807..315809))
                     /locus_tag="CTDLC_0284"
                     /note="putative active site [active]"
                     /db_xref="CDD:197200"
     misc_feature    complement(315807..315809)
                     /locus_tag="CTDLC_0284"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197200"
     gene            complement(316985..317704)
                     /gene="lplA_1"
                     /locus_tag="CTDLC_0285"
                     /db_xref="GeneID:12387768"
     CDS             complement(316985..317704)
                     /gene="lplA_1"
                     /locus_tag="CTDLC_0285"
                     /EC_number="6.3.2.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Lipoate-protein ligase A"
                     /protein_id="YP_005812215.1"
                     /db_xref="GI:385244371"
                     /db_xref="GeneID:12387768"
                     /translation="MRTRVIDSIRGTPKDLMQKDRLLLDSLRKGEVILHLYEWEGIFP
                     LTYGCFIKPERFLKANWESLGVSAASRPTGGGVTFHNSDYAFSLLVSSEHPLYQDSIL
                     ANYHTVNRFVLKTINKLFGLEGSLSPIEVSTDRAESSNFCVAKTSKYDVLIGNRKVGG
                     AAQRSVKQGFLHQGSIFLSGNSLDFYRNILLPDLVDKIGPEIEKSAFFPLGMEASSTV
                     LKEVRKEVKDSLMRIFMQEGI"
     misc_feature    complement(316991..317704)
                     /gene="lplA_1"
                     /locus_tag="CTDLC_0285"
                     /note="Lipoate-protein ligase A [Coenzyme metabolism];
                     Region: LplA; COG0095"
                     /db_xref="CDD:223173"
     gene            317969..320533
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /db_xref="GeneID:12387769"
     CDS             317969..320533
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /codon_start=1
                     /transl_table=11
                     /product="Negative regulator of genetic competence
                     clpC/mecB"
                     /protein_id="YP_005812216.1"
                     /db_xref="GI:385244372"
                     /db_xref="GeneID:12387769"
                     /translation="MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGV
                     AVNVLRTLGVDFDTAKHEVERLIGYGPEIQVCGDPALTGRVKKSFESANEEAALLEHN
                     YVGTEHLLLGILNQSDGVALQVLENLHVDPKEIRKEILKELETFNLQLPPSSSITPRN
                     TNSSSSSKSSSPLGGHTLGGDKPEKLSALKAYGYDLTEMFKESRLDPVIGRSAEVERL
                     ILILCRRRKNNPVLVGEAGVGKTAIVEGLAQKIVSGEVPEALRKKRLITLDLALMIAG
                     TKYRGQFEERIKAVMDEVRKHGNILLFIDELHTIVGAGAAEGAIDASHILKPALARGE
                     IQCIGATTLDEYRKHIEKDAALERRFQKIVVQPPSVDETVEILRGLKKKYEEHHNVFI
                     TDEALVAAAKLSDQYVHGRFLPDKAIDLLDEAGARVRVNTMGQPSDLVRLEAEIEKTK
                     QAKEQAIGTQEYEKAASLRDEEKKLREKLGNMKQQWESNKEEHQVPVDEEAVAQVVSV
                     QTGIPAARLTEAESEKLLTLETTLQKKVIGQSQAVASICRAIRRSRTGIKDPNRPMGS
                     FLFLGPTGVGKTLLAQQIAIEMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVGHEE
                     GGHLTEQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKIDFRNTIIIM
                     TSNLGADLIRKSGEIGFGLRSHMDYAVIKEKIDAAVKKHLKPEFINRLDESVIFKPLE
                     KEALSEIIHLEINKLGSRLQNYQMDLNIPDSVISFLVTKGHSPEMGARPLRRVVEQYL
                     EDPLAEMLLKESCRQEARKLRARLTEERVVFEREEEAVSALAIEGDGSEPITADES"
     misc_feature    317978..320404
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="ATP-binding subunits of Clp protease and DnaK/DnaJ
                     chaperones [Posttranslational modification, protein
                     turnover, chaperones]; Region: clpA; COG0542"
                     /db_xref="CDD:223616"
     misc_feature    318014..318172
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="Clp amino terminal domain; Region: Clp_N;
                     pfam02861"
                     /db_xref="CDD:251573"
     misc_feature    318242..318400
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="Clp amino terminal domain; Region: Clp_N;
                     pfam02861"
                     /db_xref="CDD:251573"
     misc_feature    318593..319072
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    318668..318691
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(318671..318694,318881..318883,318992..318994)
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    318869..318886
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    319043..319045
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    319295..319402
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="UvrB/uvrC motif; Region: UVR; pfam02151"
                     /db_xref="CDD:251123"
     misc_feature    319646..320023
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    319679..319702
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(319682..319705,319895..319897,320021..320023)
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    319883..319900
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    320183..320395
                     /gene="mecB"
                     /locus_tag="CTDLC_0286"
                     /note="C-terminal, D2-small domain, of ClpB protein;
                     Region: ClpB_D2-small; pfam10431"
                     /db_xref="CDD:255983"
     gene            complement(320514..321590)
                     /gene="mnmA"
                     /locus_tag="CTDLC_0287"
                     /db_xref="GeneID:12387770"
     CDS             complement(320514..321590)
                     /gene="mnmA"
                     /locus_tag="CTDLC_0287"
                     /EC_number="2.1.1.61"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (5-methyl
                     aminomethyl-2-thiouridylate)-methyltransferase"
                     /protein_id="YP_005812217.1"
                     /db_xref="GI:385244373"
                     /db_xref="GeneID:12387770"
                     /translation="MRKTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN
                     GECTATKDFRDVERIAEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNR
                     EIKFDLLQKKVRELKGDFLATGHYCRGGADGTGLSRGIDPNKDQSYFLCGTPKDALSN
                     VLFPLGGMYKTEVRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSPGDIID
                     FDTQQVVGRHEGAHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYR
                     QELLAKELNWFVPLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQ
                     TVAFYQGDICLGGGVIEVPMIHQL"
     misc_feature    complement(320541..321584)
                     /gene="mnmA"
                     /locus_tag="CTDLC_0287"
                     /note="tRNA methyl transferase; Region: tRNA_Me_trans;
                     pfam03054"
                     /db_xref="CDD:251696"
     misc_feature    complement(320541..321581)
                     /gene="mnmA"
                     /locus_tag="CTDLC_0287"
                     /note="tRNA methyl transferase. This family represents
                     tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
                     which is involved in the biosynthesis of the modified
                     nucleoside 5-methylaminomethyl-2-thiouridine present in
                     the wobble position of some tRNAs; Region: tRNA_Me_trans;
                     cd01998"
                     /db_xref="CDD:238956"
     misc_feature    complement(order(321483..321485,321489..321491,
                     321546..321557,321561..321569))
                     /gene="mnmA"
                     /locus_tag="CTDLC_0287"
                     /note="Ligand Binding Site [chemical binding]; other site"
                     /db_xref="CDD:238956"
     gene            321822..323513
                     /locus_tag="CTDLC_0288"
                     /db_xref="GeneID:12387771"
     CDS             321822..323513
                     /locus_tag="CTDLC_0288"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812218.1"
                     /db_xref="GI:385244374"
                     /db_xref="GeneID:12387771"
                     /translation="MVYFRAHQPRHTPKTFPLEVHHSFSDKHPQIAKAMRITGIALAA
                     LSLLAVVACVIAVSAGGAAIPLAVISGIAVMSGLLSAATIICSAKKALAQRKQKQLEE
                     SLPLDNATEHVSYLTSDTSYFNQWESLGALNKQLSQIDLTIQAPEKKLLKEVLGSRYD
                     SINHSIEEISDRFTKMLSLLRLREHFYRGEERYAPYLSPPLLNKNRLLTQITSNMIRM
                     LPKSGGVFSLKANTLSHASRTLYTVLKVALSLGVLAGVAALIIFLPPSLPFIAVIGVS
                     SLALGMASFLMIRGIKYLLEHSPLNRKQLAKDIQKTIGPDVLASMVHYQHQLLSHLHE
                     TLLDEAITARWSEPFFIEHANLKAKIEDLTKQYDILNAAFNKSLQQDEALRSQLEKRA
                     YLFPIPNNDENAKTKESQLLDSENDSNSEFQEIINKGLEAANKRRADAKSKFYTEDET
                     SDKIFSIWKPTKNLALEDLWRVHEACNEEQQALLLEDYMSYKTSECQAALQKVSQELK
                     AAQKSFAVLEKHALDRSYESSVATMDLARANQETHRLLNILSELQQLAQYLLDNH"
     misc_feature    321981..322454
                     /locus_tag="CTDLC_0288"
                     /note="IncA protein; Region: IncA; pfam04156"
                     /db_xref="CDD:252417"
     misc_feature    322521..323129
                     /locus_tag="CTDLC_0288"
                     /note="IncA protein; Region: IncA; pfam04156"
                     /db_xref="CDD:252417"
     gene            complement(323600..324739)
                     /locus_tag="CTDLC_0289"
                     /db_xref="GeneID:12387772"
     CDS             complement(323600..324739)
                     /locus_tag="CTDLC_0289"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812219.1"
                     /db_xref="GI:385244375"
                     /db_xref="GeneID:12387772"
                     /translation="MVIPKVDLGESAVMMGYKLTSQLAMLSILLTFTHTMGHASQMSQ
                     TLPTIIEAQAEEALQADRGVAGQALKKLRKKRCASRKSACKASFKKKDFFSCITNGLF
                     SGNHEQRLTAKKENKARGKEPRVVVQTTKKRQITQSEKEFFDWLCNSKRERKLLKKKP
                     VNTSLAKSEELSPKEAAIAAARASLSPEEKRQLIREWLAEEKTARKSGRAACAVSENL
                     KRDGSITSTLRYDAEKALTTRVKRNENSVNARARQRAALQKAKKAKTEKPEADEKAAE
                     AVAAAPTKQAHKEPENYFAATASTNNTNVMSYLNAHQYRCDSSETDWPCSSCVTKRRA
                     NFGISVCTMVVTVIAMIVGAVIISNATDSTVAGSSGTGGGGSTQP"
     gene            complement(324797..325474)
                     /gene="ptsN_1"
                     /locus_tag="CTDLC_0290"
                     /db_xref="GeneID:12387773"
     CDS             complement(324797..325474)
                     /gene="ptsN_1"
                     /locus_tag="CTDLC_0290"
                     /EC_number="2.7.1.69"
                     /codon_start=1
                     /transl_table=11
                     /product="Nitrogen regulatory IIA protein"
                     /protein_id="YP_005812220.1"
                     /db_xref="GI:385244376"
                     /db_xref="GeneID:12387773"
                     /translation="MDLRLDQLAVLLDVAEDSIRQWVSCGGIPSYTINDELRFNREEV
                     EDWLIHNHGVILDEKREEKGESKDLSLRYSLYRAIYRGGVLKNVLVDSKEGALRYAAH
                     YIANKFELDPVVLFEMLMHRESLMSTGIGEGIALPHAKDFLINVGYDIIVPVFLSQSI
                     EYGALDGKPVDTLFFLFANQDRNHLNLVNKIVHLGMSIQARLFLKEHPDQPQLLAFVK
                     NWEAQIH"
     misc_feature    complement(325331..325468)
                     /gene="ptsN_1"
                     /locus_tag="CTDLC_0290"
                     /note="Helix-turn-helix domain; Region: HTH_17; pfam12728"
                     /db_xref="CDD:257254"
     misc_feature    complement(324824..325225)
                     /gene="ptsN_1"
                     /locus_tag="CTDLC_0290"
                     /note="PTS_IIA, PTS system, fructose/mannitol specific IIA
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This...; Region: PTS_IIA_fru;
                     cd00211"
                     /db_xref="CDD:238129"
     misc_feature    complement(order(325061..325063,325109..325111))
                     /gene="ptsN_1"
                     /locus_tag="CTDLC_0290"
                     /note="active site"
                     /db_xref="CDD:238129"
     misc_feature    complement(325061..325063)
                     /gene="ptsN_1"
                     /locus_tag="CTDLC_0290"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238129"
     gene            complement(325477..325983)
                     /gene="ptsN_2"
                     /locus_tag="CTDLC_0291"
                     /db_xref="GeneID:12387774"
     CDS             complement(325477..325983)
                     /gene="ptsN_2"
                     /locus_tag="CTDLC_0291"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system nitrogen regulatory protein IIA"
                     /protein_id="YP_005812221.1"
                     /db_xref="GI:385244377"
                     /db_xref="GeneID:12387774"
                     /translation="MDLGILGNVKMTCVADHKQAVTLSSLLSSDLITFLHSDTREDIL
                     FELSELAARAGLLEDREAFFRALLARENIMSTGIGMGVAIPHGKIDGSADFFIALGIH
                     SEGILWDAIDGLSVRLVFLIGGPSDAPSKYLKLLSALTQSLRDEARRSQLLQVQTVEE
                     VMSVFSGV"
     misc_feature    complement(325489..325890)
                     /gene="ptsN_2"
                     /locus_tag="CTDLC_0291"
                     /note="PTS_IIA, PTS system, fructose/mannitol specific IIA
                     subunit. The bacterial phosphoenolpyruvate: sugar
                     phosphotransferase system (PTS) is a multi-protein system
                     involved in the regulation of a variety of metabolic and
                     transcriptional processes. This...; Region: PTS_IIA_fru;
                     cd00211"
                     /db_xref="CDD:238129"
     misc_feature    complement(order(325726..325728,325774..325776))
                     /gene="ptsN_2"
                     /locus_tag="CTDLC_0291"
                     /note="active site"
                     /db_xref="CDD:238129"
     misc_feature    complement(325726..325728)
                     /gene="ptsN_2"
                     /locus_tag="CTDLC_0291"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:238129"
     gene            complement(325955..326392)
                     /gene="dut"
                     /locus_tag="CTDLC_0292"
                     /db_xref="GeneID:12387775"
     CDS             complement(325955..326392)
                     /gene="dut"
                     /locus_tag="CTDLC_0292"
                     /EC_number="3.6.1.23"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyuridine 5'-triphosphate
                     nucleotidohydrolase"
                     /protein_id="YP_005812222.1"
                     /db_xref="GI:385244378"
                     /db_xref="GeneID:12387775"
                     /translation="MKFFCKLESGSSLPEYATSGASGADVRANINEPIAILPGQRALI
                     PTGISVEIPHGYEIQVRSRSGLASKYGVIVLQSPGTVDADYRGEIRVILANLGEATFI
                     VEPGMRIAQLVVAKVEQVSFVETQEELTATARGTGGFGHTGEC"
     misc_feature    complement(326051..326329)
                     /gene="dut"
                     /locus_tag="CTDLC_0292"
                     /note="Trimeric dUTP diphosphatases; Region:
                     trimeric_dUTPase; cd07557"
                     /db_xref="CDD:143638"
     misc_feature    complement(order(326060..326062,326072..326074,
                     326081..326095,326105..326107,326111..326113,
                     326117..326119,326123..326125,326144..326146,
                     326153..326155,326171..326179,326195..326212,
                     326216..326218,326264..326266,326270..326275,
                     326288..326290,326324..326329))
                     /gene="dut"
                     /locus_tag="CTDLC_0292"
                     /note="trimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:143638"
     misc_feature    complement(order(326123..326128,326138..326140,
                     326147..326155,326198..326206))
                     /gene="dut"
                     /locus_tag="CTDLC_0292"
                     /note="active site"
                     /db_xref="CDD:143638"
     gene            complement(326429..327355)
                     /gene="accD"
                     /locus_tag="CTDLC_0293"
                     /db_xref="GeneID:12387776"
     CDS             complement(326429..327355)
                     /gene="accD"
                     /locus_tag="CTDLC_0293"
                     /EC_number="6.4.1.2"
                     /codon_start=1
                     /transl_table=11
                     /product="Acetyl-coenzyme A carboxylase carboxyl
                     transferase subunit beta"
                     /protein_id="YP_005812223.1"
                     /db_xref="GI:385244379"
                     /db_xref="GeneID:12387776"
                     /translation="MRLFSYDKPKIKVQKIKADGFSGWLKCTHCSEMIHANELGQNFN
                     CCPKCSYHYRISVSERIALLADKDSWNPLFSDLRSQDPLNFVDTDTYPNRLEKARKDN
                     PDSEGVLVGVCTIGSHPVALAVMDFSFMAGSMGAVVGEKLTRLIEKAIDSRLPVIIVS
                     ASGGARMQESVFSLMQMAKTSAALAKLHEAKLPYISVLTNPTSGGVTASFASLGDVII
                     AEPKALICFAGPRVVSQVIGEDLPEGAQKSEFLLEHGMIDKVVERKQLKTTLESLLSF
                     FSCQAYSGGKGNCPRDISKTLKEIFLLTDDNE"
     misc_feature    complement(326507..327355)
                     /gene="accD"
                     /locus_tag="CTDLC_0293"
                     /note="acetyl-CoA carboxylase subunit beta; Validated;
                     Region: PRK05654"
                     /db_xref="CDD:235547"
     gene            complement(327427..328083)
                     /gene="sodM"
                     /locus_tag="CTDLC_0294"
                     /db_xref="GeneID:12387777"
     CDS             complement(327427..328083)
                     /gene="sodM"
                     /locus_tag="CTDLC_0294"
                     /EC_number="1.15.1.1"
                     /codon_start=1
                     /transl_table=11
                     /product="Superoxide dismutase"
                     /protein_id="YP_005812224.1"
                     /db_xref="GI:385244380"
                     /db_xref="GeneID:12387777"
                     /translation="MARIVTLFFRMAMVFSSYMLPALPYDYDALEPVISAEIMQLHHQ
                     KHHQGYINNLNEALKSLDVANATQDLARLIAINPALRFNGGSHINHSLFWEMLAPQGK
                     GGGVPPRHELLKLIEKFWGSFDNFLKNFITSSAAVQGSGWGWLAFCPQKQELMVQTTA
                     NQDPLEATTGMIPLLGVDVWEHAYYLQYKNARMDYLKSFPSIINWDYIENRFVEMSKQ
                     "
     misc_feature    complement(327430..328041)
                     /gene="sodM"
                     /locus_tag="CTDLC_0294"
                     /note="Superoxide dismutase [Inorganic ion transport and
                     metabolism]; Region: SodA; COG0605"
                     /db_xref="CDD:223678"
     misc_feature    complement(327790..328035)
                     /gene="sodM"
                     /locus_tag="CTDLC_0294"
                     /note="Iron/manganese superoxide dismutases, alpha-hairpin
                     domain; Region: Sod_Fe_N; pfam00081"
                     /db_xref="CDD:249570"
     misc_feature    complement(327448..327762)
                     /gene="sodM"
                     /locus_tag="CTDLC_0294"
                     /note="Iron/manganese superoxide dismutases, C-terminal
                     domain; Region: Sod_Fe_C; pfam02777"
                     /db_xref="CDD:251524"
     gene            complement(328179..329960)
                     /gene="mrsA_1"
                     /locus_tag="CTDLC_0295"
                     /db_xref="GeneID:12387778"
     CDS             complement(328179..329960)
                     /gene="mrsA_1"
                     /locus_tag="CTDLC_0295"
                     /EC_number="5.4.2.2"
                     /EC_number="5.4.2.8"
                     /note="phosphomannomutase"
                     /codon_start=1
                     /transl_table=11
                     /product="Phosphoglucomutase"
                     /protein_id="YP_005812225.1"
                     /db_xref="GI:385244381"
                     /db_xref="GeneID:12387778"
                     /translation="MEIPRRKIEGMFDPQTAKNILSWLEDVVCDHTSVLTLLDNDPER
                     LRELFSETLTFGTAGLRGLVGIGTNRLNVFTIRRATQGLARVLKRRYPDEKISVVIGY
                     DTRHYSFEFGQETAKVLAGNGILAYLFQIPEPLALVSYSVRELQAKAGVMITASHNPP
                     PYNGYKVYMSTGGQVLPPMDQEIVEEFQKVEMVSAVESLDHPYIRMVQEDMENCYEET
                     LHNLQLCEEDNRRHGSLLRISYSPLHGTGVTMIPRILKDWGFSSVSLVEKQIVPDGDF
                     STVVLPNPEDPEALVLGIQQMVEQKDDLFIATDPDSDRIGVVSLEKEGPYRFNGNQIA
                     CLLAAHILSKESQKAPLGAEDKVVKSLVTTELLTAISESYGANIVNVGAGFKYIGEKI
                     ELWRSGMERFIFGAEESYGYLYGSYVEDKDAMIAAALISEAALQQKIRGCTLRDALLE
                     LYEVYGYYANRTESIDLPIDQPQRKQELLDRWETQDPLRMSLSSRKLIAFENYNTGEG
                     RDLVTDITYKLSLPKMSMLCFYYEGDCRVIVRPSGTEPKMKLYFEIKQSFSEFSKERT
                     VREAREKESFEALQQFIKETKSYLFYS"
     misc_feature    complement(328218..329816)
                     /gene="mrsA_1"
                     /locus_tag="CTDLC_0295"
                     /note="Phosphomannomutase [Carbohydrate transport and
                     metabolism]; Region: {ManB}; COG1109"
                     /db_xref="CDD:224034"
     misc_feature    complement(328296..329807)
                     /gene="mrsA_1"
                     /locus_tag="CTDLC_0295"
                     /note="This CD includes PGM2 (phosphoglucomutase 2) and
                     PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
                     is thought to be a phosphopentomutase that catalyzes the
                     conversion of the nucleoside breakdown products,
                     ribose-1-phosphate and...; Region: PGM2; cd05799"
                     /db_xref="CDD:100092"
     misc_feature    complement(order(328314..328316,328329..328337,
                     328341..328343,328728..328730,328734..328736,
                     328740..328742,328806..328814,328875..328877,
                     329019..329024,329028..329030,329034..329036,
                     329463..329465,329487..329495,329778..329780,
                     329787..329789,329793..329795))
                     /gene="mrsA_1"
                     /locus_tag="CTDLC_0295"
                     /note="active site"
                     /db_xref="CDD:100092"
     misc_feature    complement(order(328314..328316,328329..328337,
                     328341..328343,328728..328730,328734..328736,
                     328740..328742,328806..328808,328812..328814,
                     328875..328877,329019..329021,329493..329495,
                     329787..329789))
                     /gene="mrsA_1"
                     /locus_tag="CTDLC_0295"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:100092"
     misc_feature    complement(order(329022..329024,329028..329030,
                     329034..329036,329493..329495))
                     /gene="mrsA_1"
                     /locus_tag="CTDLC_0295"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:100092"
     gene            complement(330112..330585)
                     /locus_tag="CTDLC_0296"
                     /db_xref="GeneID:12387779"
     CDS             complement(330112..330585)
                     /locus_tag="CTDLC_0296"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812226.1"
                     /db_xref="GI:385244382"
                     /db_xref="GeneID:12387779"
                     /translation="MSMRAVLHLEHKRYFQNHGHILFEGLAPVSDCKQLEAELKLFLK
                     EVAVVKDRHLQRWRENVHRTLPEVQMIVKRVRLDHLAAELTHRSRVALVRDLWVQKQE
                     EIFFDDCDCSVLLCLSGEKAGWGLFFSGEYPQDVFNWGAGDTAIILRFSSAGFPN"
     gene            330688..331383
                     /gene="rnc"
                     /locus_tag="CTDLC_0297"
                     /db_xref="GeneID:12387780"
     CDS             330688..331383
                     /gene="rnc"
                     /locus_tag="CTDLC_0297"
                     /EC_number="3.1.26.3"
                     /codon_start=1
                     /transl_table=11
                     /product="Ribonuclease III"
                     /protein_id="YP_005812227.1"
                     /db_xref="GI:385244383"
                     /db_xref="GeneID:12387780"
                     /translation="MQHTVDIQAIESKLNFTFSHPRLLITALTHPSYRNEFPSAEEDS
                     ERLEFLGDAVLGLVVTEHLFLLFPALNEGLLSTTRAALVNAEACFEYTQKLSLGEHLL
                     IGRGEKMQSHRGKISAYANLLEAILGAVYLDGGLSPARQIIVPLLPDKESILPLMLVN
                     PKNRLQQFTQQTLKVLPSYKALPWKSEDGSPGYHVQVFVNGDLWGEGFAGSKKEAEKL
                     AAKQALSTHDNKN"
     misc_feature    330697..331377
                     /gene="rnc"
                     /locus_tag="CTDLC_0297"
                     /note="ribonuclease III; Reviewed; Region: rnc; PRK00102"
                     /db_xref="CDD:234633"
     misc_feature    330751..331128
                     /gene="rnc"
                     /locus_tag="CTDLC_0297"
                     /note="RIBOc. Ribonuclease III C terminal domain. This
                     group consists of eukaryotic, bacterial and archeal
                     ribonuclease III (RNAse III) proteins. RNAse III is a
                     double stranded RNA-specific endonuclease. Prokaryotic
                     RNAse III is important in...; Region: RIBOc; cd00593"
                     /db_xref="CDD:238333"
     misc_feature    order(330820..330825,330832..330837,330844..330846,
                     330853..330858,330865..330870,330874..330882,
                     330910..330912,331078..331080,331105..331107)
                     /gene="rnc"
                     /locus_tag="CTDLC_0297"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238333"
     misc_feature    order(330820..330822,330829..330831,330841..330843,
                     331048..331050,331057..331059)
                     /gene="rnc"
                     /locus_tag="CTDLC_0297"
                     /note="active site"
                     /db_xref="CDD:238333"
     misc_feature    order(330829..330831,331048..331050,331057..331059)
                     /gene="rnc"
                     /locus_tag="CTDLC_0297"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:238333"
     misc_feature    331165..331359
                     /gene="rnc"
                     /locus_tag="CTDLC_0297"
                     /note="Double-stranded RNA binding motif. Binding is not
                     sequence specific but is highly specific for double
                     stranded RNA. Found in a variety of proteins including
                     dsRNA dependent protein kinase PKR, RNA helicases,
                     Drosophila staufen protein, E. coli RNase III; Region:
                     DSRM; cd00048"
                     /db_xref="CDD:238007"
     misc_feature    order(331165..331167,331183..331188,331315..331326,
                     331333..331335)
                     /gene="rnc"
                     /locus_tag="CTDLC_0297"
                     /note="dsRNA binding site [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238007"
     gene            331268..332731
                     /gene="radA"
                     /locus_tag="CTDLC_0298"
                     /db_xref="GeneID:12387781"
     CDS             331268..332731
                     /gene="radA"
                     /locus_tag="CTDLC_0298"
                     /note="protein RadA"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
                     /protein_id="YP_005812228.1"
                     /db_xref="GI:385244384"
                     /db_xref="GeneID:12387781"
                     /translation="MYKSLLMGIFGEKALQDQKKKQKNLLLNRRYQHMTTKIKTQWTC
                     TECGTHSPKWLGQCSGCLQWNTLVEERTAPKLNTSSYSSSSSIPIPLNNVEFQEEIRI
                     HTQAQGWNRLLGGGTVRGSLALLGGEPGIGKSTLLLQISSQFAAAGHKVLYVCGEESV
                     SQTSLRAQRLQISSNNIFLFPETNLEDIKQQIDNIAPDILVIDSIQIIFSPSLSSAPG
                     SVAQVRETTAELMHIAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNAHAN
                     YRMIRSVKNRFGPTNELLILSMHTDGLREVENPSGLFLQEKIVETTGSTIIPIVEGSE
                     TLLIEVQALVSSSPFSNPVRKTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGL
                     KITQPSADLGAVLSVVSSLYNRYLPKNYTYTGEIGLGGEIRHVSHMEHRIKESIIMGF
                     KGIVMPFGQIKGLPKEFLDQIDIIGVKTIKDAVRLLQ"
     misc_feature    331376..332725
                     /gene="radA"
                     /locus_tag="CTDLC_0298"
                     /note="DNA repair protein RadA; Provisional; Region:
                     PRK11823"
                     /db_xref="CDD:236994"
     misc_feature    331391..332497
                     /gene="radA"
                     /locus_tag="CTDLC_0298"
                     /note="Sms (bacterial radA) DNA repair protein. This
                     protein is not related to archael radA any more than is to
                     other RecA-like NTPases. Sms has a role in recombination
                     and recombinational repair and is responsible for the
                     stabilization or processing of...; Region: Sms; cd01121"
                     /db_xref="CDD:238541"
     misc_feature    331646..331669
                     /gene="radA"
                     /locus_tag="CTDLC_0298"
                     /note="Walker A motif/ATP binding site; other site"
                     /db_xref="CDD:238541"
     misc_feature    order(331649..331651,331661..331669,331724..331726,
                     331730..331732,331874..331879)
                     /gene="radA"
                     /locus_tag="CTDLC_0298"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:238541"
     misc_feature    331865..331876
                     /gene="radA"
                     /locus_tag="CTDLC_0298"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:238541"
     misc_feature    <332465..332644
                     /gene="radA"
                     /locus_tag="CTDLC_0298"
                     /note="Subunit ChlI of Mg-chelatase; Region: ChlI;
                     pfam13541"
                     /db_xref="CDD:257860"
     gene            332709..333434
                     /gene="hemC"
                     /locus_tag="CTDLC_0299"
                     /db_xref="GeneID:12387782"
     CDS             332709..333434
                     /gene="hemC"
                     /locus_tag="CTDLC_0299"
                     /EC_number="2.5.1.61"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen deaminase"
                     /protein_id="YP_005812229.1"
                     /db_xref="GI:385244385"
                     /db_xref="GeneID:12387782"
                     /translation="MLSAYYNDPFLADFCLGNIPLRLASRQSSLAVLQAHECLRKLQI
                     FFPRLWGQIITTTTQGDLDQETPLCAVENTGFFTDDVDFLVQSGQCDLGIHSAKDLPE
                     NPKATVVSITASIDPRDILVFHEKYLSIPLPRRLRIGSSSVRRKELLSLLYPSAIITD
                     IRGTIQTRLKLLEEKNFDAIVMANAAVSRLGLRLPCTKILPPPYHPLQGRLAITASRH
                     IRSWRGLFLTCGITEDVEIMCFS"
     misc_feature    332718..333410
                     /gene="hemC"
                     /locus_tag="CTDLC_0299"
                     /note="porphobilinogen deaminase; Provisional; Region:
                     PRK01066"
                     /db_xref="CDD:167150"
     misc_feature    332760..>333431
                     /gene="hemC"
                     /locus_tag="CTDLC_0299"
                     /note="Porphobilinogen deaminase [Coenzyme metabolism];
                     Region: HemC; COG0181"
                     /db_xref="CDD:223259"
     gene            333782..334174
                     /locus_tag="CTDLC_0300"
                     /db_xref="GeneID:12387783"
     CDS             333782..334174
                     /locus_tag="CTDLC_0300"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812230.1"
                     /db_xref="GI:385244386"
                     /db_xref="GeneID:12387783"
                     /translation="MGNQSVICWPHIFGDMCYVLNFITGKYSTPSPNNCRPQSPQKTG
                     GHSNLLFVLALLPVIGLGVAIYLCARRANYWKGNAAIATAGGLGLITIAAALMVVITP
                     IIFCLRYLYQLLRQLPAHCCGSSHQIEI"
     gene            complement(334227..337031)
                     /gene="pknD"
                     /locus_tag="CTDLC_0301"
                     /db_xref="GeneID:12387784"
     CDS             complement(334227..337031)
                     /gene="pknD"
                     /locus_tag="CTDLC_0301"
                     /EC_number="2.7.11.1"
                     /codon_start=1
                     /transl_table=11
                     /product="Serine/threonine protein kinase"
                     /protein_id="YP_005812231.1"
                     /db_xref="GI:385244387"
                     /db_xref="GeneID:12387784"
                     /translation="MQRYELIRLIGKGGMGEVYLAHDKACSRRVALKRIREDLSGNAL
                     LRQRFLREAKIAADLIHPGIVPVYSICSDGEAVYYTMPYIEGFSLKSLLKSVWQKEVL
                     SKELEEKTSVKSFLPIFDKICATVEYIHSKGVLHRDLKPDNILLGLFGEVVIIDWGAA
                     IFKHAKELKLEQDDEAAVSFDERNICYSSMTIPGKIVGTPDYMAPESLLGVEASEKTD
                     IYALGLILYQMLTLAFPYRRKKGRKLSYRDVVLPPIEMSPYREIPPSLSQIAMKAIAI
                     NPADRFSSIQELRQALQPYLQGDPEWTVKATLMAKEKSCWKYYDPILLSRYFPVLASS
                     PAQWYNFMLSEVEISASTRVEYTVTKSAVHEGMGILFLPSKEAERGEFYCGYGLWFSV
                     QNHELTVSLIKNGIEIQKKSQEMISQQSRFAILIEKSDNRIAVFVEQALFILHIDYLP
                     SLGNRLGVIIQDLQGMSNIAISESIGALRVSCLAVPDAFLSEKLYDQAAIFYRKIRDS
                     FPGRKESYEAQFRLGVTLLTQIEEQGGDLTQALSSFDYLHGGAGAPLEYLGKALVYQR
                     NGSFVEEIRCLLFALKRYSQHPEIPRLEDHLCFRLYDSLHKHRSEALVFMLLILWIAP
                     EKISVREEERFLRIIYHKQQATLFCQVDKAPLQFRSSKMELFLSFWTGFSLFLPELFR
                     RAGGLRDYQALADIFYVAGVSGNREAFMQFSTALANVSDEITFPESLHNQKVAELMFF
                     VKGVEALRNKDYQKAKKLLWKTPFTLQLYALDMFHIQAFLDEEIESFIDLLQAIYDPA
                     SEEERDHILVYIIQTHLWNRDLERAYKLLNDRFPLDEELAEYSEAFILWGCYLALTGD
                     RVVVKAHFSRCRYKYGKSALIGKCVDGDIFDYLDNLVWWEKKMTLFQSYFLLRCLNES
                     PRRYEKYRQAYLSMENNFFD"
     misc_feature    complement(334230..337031)
                     /gene="pknD"
                     /locus_tag="CTDLC_0301"
                     /note="serine/threonine-protein kinase; Reviewed; Region:
                     pknD; PRK13184"
                     /db_xref="CDD:183880"
     misc_feature    complement(336345..337004)
                     /gene="pknD"
                     /locus_tag="CTDLC_0301"
                     /note="Catalytic domain of Protein Kinases; Region: PKc;
                     cd00180"
                     /db_xref="CDD:173623"
     misc_feature    complement(order(336429..336440,336555..336557,
                     336564..336566,336597..336599,336603..336608,
                     336612..336614,336618..336620,336762..336764,
                     336768..336770,336780..336791,336837..336839,
                     336933..336935,336939..336941,336978..336980,
                     336990..337004))
                     /gene="pknD"
                     /locus_tag="CTDLC_0301"
                     /note="active site"
                     /db_xref="CDD:173623"
     misc_feature    complement(order(336564..336566,336597..336599,
                     336603..336608,336612..336614,336618..336620,
                     336768..336770,336780..336791,336837..336839,
                     336933..336935,336939..336941,336978..336980,
                     336990..337004))
                     /gene="pknD"
                     /locus_tag="CTDLC_0301"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:173623"
     misc_feature    complement(order(336429..336440,336555..336557,
                     336606..336608,336612..336614,336618..336620,
                     336762..336764,336768..336770,336990..336992))
                     /gene="pknD"
                     /locus_tag="CTDLC_0301"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:173623"
     misc_feature    complement(order(336429..336440,336549..336569))
                     /gene="pknD"
                     /locus_tag="CTDLC_0301"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:173623"
     gene            complement(337046..339865)
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /db_xref="GeneID:12387785"
     CDS             complement(337046..339865)
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /EC_number="6.1.1.9"
                     /codon_start=1
                     /transl_table=11
                     /product="valyl-tRNA synthetase"
                     /protein_id="YP_005812232.1"
                     /db_xref="GI:385244388"
                     /db_xref="GeneID:12387785"
                     /translation="MNEDQFPKAYDPKSSETGVYSFWERSGMFVANASSEKPAYSIVM
                     PPPNVTGILHMGHALVNTLQDTLIRYKRMQGFEVCWVPGTDHAGIATQTVVERHLKAS
                     LGKQRTDFSREEFLKHVWDWKEKSQNVILSQLRQLGCSCDWSRQRFTMDPGANRAVKK
                     AFKILFDKGVIYRGYYLVNWDPILQTALADDEVEYEERDGWLYYIRYQVVNSEEFITV
                     ATTRPETLLGDTAIAVSPEDLRYSHLIGAKVVVPFVNREIPIIGDFSVDASFGTGAVK
                     ITPAHDKDDYKTGMNHQLPMINILTPTGEINENGGIFTGLSREVARENIITSLEALGL
                     FVKKEAYSSRVGVSYRSGAIIEPYLSKQWFVSVDSFRDSLRGFVNSEEIRIFPPEFVR
                     NYLTWVNNLKDWCISRQLWWGHRIPVWHNKHDENVICFDGEGGPEEVMRDPESWYQDP
                     DVLDTWFSSGLWPLTCFGWPDENSLDLKKFYPTAVLVTGHDILFFWVTRMVLMCSAMV
                     DTEPFSDVFLHGLIFGKSYREYDEKGEWFYVSGERKRDYDKGKALPKNVVAKWEKLSK
                     SKGNVIDPIEMIEAYGADAVRLTLCSCANRGEQIDLDYHLFEEYKNFINKLWNGARFI
                     FGHISELTSRDLEEGVNQDLLGLEDFYILDRFNELLDLIDGHYNCYSFDKIASLAYDF
                     FKNDLCSTYLEIIKPTLFGKQDSDQQRATKRKLLATLLINILGVLHPIVPYITETLFQ
                     KLKATLGTVENGKGDSVTGHAVSMLRSEACMVAEYPKPIHVAFPQGLRESFGIAERLV
                     YTIRNIRGEMQLDPREPLQAFVISSEKKELVDVCIPIMCALGGVKTVEQLAEAPKDSI
                     FSLGVVEGIQVGVILPPEHLAKERVRLEKEKTRLEKSIDSVSKLLASEDFRTRANPSL
                     VQAKKDSLRNSQRELQSILDKLASL"
     misc_feature    complement(337049..339859)
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /note="valyl-tRNA synthetase; Reviewed; Region: valS;
                     PRK05729"
                     /db_xref="CDD:235582"
     misc_feature    complement(338060..339754)
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /note="catalytic core domain of valyl-tRNA synthetases;
                     Region: ValRS_core; cd00817"
                     /db_xref="CDD:185677"
     misc_feature    complement(order(338174..338176,338300..338311,
                     338378..338380,338390..338395,338399..338404,
                     338489..338491,338498..338500,339611..339613,
                     339686..339688,339695..339700,339704..339706,
                     339722..339733))
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /note="active site"
                     /db_xref="CDD:185677"
     misc_feature    complement(339695..339706)
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /note="HIGH motif; other site"
                     /db_xref="CDD:185677"
     misc_feature    complement(338876..339256)
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /note="Leucyl-tRNA synthetase, Domain 2; Region:
                     tRNA-synt_1_2; pfam13603"
                     /db_xref="CDD:257918"
     misc_feature    complement(338165..338179)
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /note="KMSKS motif; other site"
                     /db_xref="CDD:185677"
     misc_feature    complement(337640..338062)
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /note="Anticodon-binding domain of valyl tRNA synthetases;
                     Region: Anticodon_Ia_Val; cd07962"
                     /db_xref="CDD:153416"
     misc_feature    complement(order(337778..337780,337787..337792,
                     337814..337816,337835..337837,337844..337846,
                     337997..338002,338006..338011,338018..338023,
                     338030..338035,338039..338041,338048..338053,
                     338057..338059))
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /note="tRNA binding surface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:153416"
     misc_feature    complement(order(337778..337780,337787..337792,
                     337802..337804,337997..338002,338006..338011,
                     338018..338020))
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /note="anticodon binding site; other site"
                     /db_xref="CDD:153416"
     misc_feature    complement(337049..337240)
                     /gene="valS"
                     /locus_tag="CTDLC_0302"
                     /note="Valyl tRNA synthetase tRNA binding arm; Region:
                     Val_tRNA-synt_C; pfam10458"
                     /db_xref="CDD:151031"
     gene            complement(339992..340468)
                     /locus_tag="CTDLC_0303"
                     /db_xref="GeneID:12387786"
     CDS             complement(339992..340468)
                     /locus_tag="CTDLC_0303"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812233.1"
                     /db_xref="GI:385244389"
                     /db_xref="GeneID:12387786"
                     /translation="MRYLLSFLRYCYSKWWAAAFSALCLGGCSQPALSSFLEFIDNDY
                     TAAAHLGIDRGCVTESVGQQLVVTWGLPSRFRDSLPVVLHVWVYYGNGEAAKFSYDVQ
                     HLSGYQVYTLKENDYQDRQGIISYKVSLTKDGKEILSRSHHLWMEVISLKAFSQLS"
     gene            complement(340428..340874)
                     /gene="atpK"
                     /locus_tag="CTDLC_0304"
                     /db_xref="GeneID:12387787"
     CDS             complement(340428..340874)
                     /gene="atpK"
                     /locus_tag="CTDLC_0304"
                     /EC_number="3.6.3.15"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type sodium ATP synthase subunit K"
                     /protein_id="YP_005812234.1"
                     /db_xref="GI:385244390"
                     /db_xref="GeneID:12387787"
                     /translation="MSSERKYMIDVSVVGPVLAMALAMIGSAVGCGMAGVASHAVMSR
                     IDEGHGKIIGLSAMPSSQSIYGLIFMLLLNDAIKDGKVSAVSGIVMGIAVGSALLLSA
                     FMQGKCCVSAIQAYARSSAIYGKSFASIGIVESFALFAFVFALLLF"
     misc_feature    complement(340431..340853)
                     /gene="atpK"
                     /locus_tag="CTDLC_0304"
                     /note="V-type ATP synthase subunit K; Provisional; Region:
                     PRK09621"
                     /db_xref="CDD:236595"
     misc_feature    complement(340656..340841)
                     /gene="atpK"
                     /locus_tag="CTDLC_0304"
                     /note="ATP synthase subunit C; Region: ATP-synt_C;
                     pfam00137"
                     /db_xref="CDD:249620"
     misc_feature    complement(340431..340628)
                     /gene="atpK"
                     /locus_tag="CTDLC_0304"
                     /note="F0F1-type ATP synthase, subunit
                     c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy
                     production and conversion]; Region: AtpE; COG0636"
                     /db_xref="CDD:223709"
     gene            complement(340916..342865)
                     /gene="atpI"
                     /locus_tag="CTDLC_0305"
                     /db_xref="GeneID:12387788"
     CDS             complement(340916..342865)
                     /gene="atpI"
                     /locus_tag="CTDLC_0305"
                     /EC_number="3.6.3.15"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type sodium ATP synthase subunit I"
                     /protein_id="YP_005812235.1"
                     /db_xref="GI:385244391"
                     /db_xref="GeneID:12387788"
                     /translation="MRVDVDKYLFIGREKSEFFSACREIGAVEFLSKSKLKDSEKVRK
                     LSEGLKVLNLLTKSCSPADLVSTKSGYLVTEQLLQEIFDLNQEITTLTESLKALGKEI
                     VRVKPLGDFSSEEIRELTLKTGLAVRFLYKRHIEGAPLEVEEENVFYLATAYNYDYYA
                     VIGIVSLSKDIFTEIEAPRSVNELREEEGHLQALLRKKKARVCELYAYREDLLEALCE
                     QCNEQSLQHAEVSAEDLFDDKVFSALGWVIVDRLDEVKKLCDSLGIYLERVQPDPDEV
                     IPTYLENHGLGALGESLVNIYDTPASTDKDPSLWVFFSFFVFFSMIINDAGYGLVFLA
                     TSLFLSFKARKQIKRSIALKRFLQMFMILGLGCVCWGGATTSFFGVSVSYTSPFREYS
                     LTHFLALKKAEYYLKERPKGYKELVHDYPILKEKKTPKEFLLAQSTSSGDSVYKAVVY
                     DKFIDNILMEIALLVGVVHLSLGMLRYCRQRYSSIGWVIFMCGAYMYLPIYLQAVSLI
                     HYALHIPYELGGLVGYYVAFIGLGVAILGGVIQRGLRGLDEITAVIQVFSDVLSYLRL
                     YALSLAGAMVGNTVMVMSERFSPAVGILIIIFGHTVNIALSIMGGVIHGLRLNFIEWY
                     HYSFDGGGKLLHPLKKVICQKSQNL"
     misc_feature    complement(340931..342865)
                     /gene="atpI"
                     /locus_tag="CTDLC_0305"
                     /note="V-type ATP synthase subunit I; Validated; Region:
                     PRK05771"
                     /db_xref="CDD:235600"
     misc_feature    complement(<342500..>342673)
                     /gene="atpI"
                     /locus_tag="CTDLC_0305"
                     /note="Protein of unknown function (DUF1319); Region:
                     DUF1319; pfam07028"
                     /db_xref="CDD:254028"
     gene            complement(342871..343482)
                     /gene="atpD"
                     /locus_tag="CTDLC_0306"
                     /db_xref="GeneID:12387789"
     CDS             complement(342871..343482)
                     /gene="atpD"
                     /locus_tag="CTDLC_0306"
                     /EC_number="3.6.3.14"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit D"
                     /protein_id="YP_005812236.1"
                     /db_xref="GI:385244392"
                     /db_xref="GeneID:12387789"
                     /translation="MSSQIKLTKNSYRAEKQKLNMLGMYLPTLKLKKALLQAEVQSAI
                     RLAAESTVTNEQARDRMYAFAELFSIPLYTDAVEQCFSVDILEKDVENIAGVEVPLLK
                     RVVLTSPEYSLLDTPIWLDSLLASVKEYVVSKIYAENAQERLLLLEEELRRVSIRVNL
                     FEKKLIPTTSQTLKKIAIFLSDRSITDVGQMKMAKKKIQQHKE"
     misc_feature    complement(342874..343482)
                     /gene="atpD"
                     /locus_tag="CTDLC_0306"
                     /note="V-type ATP synthase subunit D; Provisional; Region:
                     PRK02195"
                     /db_xref="CDD:179382"
     gene            complement(343467..344783)
                     /gene="atpB"
                     /locus_tag="CTDLC_0307"
                     /db_xref="GeneID:12387790"
     CDS             complement(343467..344783)
                     /gene="atpB"
                     /locus_tag="CTDLC_0307"
                     /EC_number="3.6.3.15"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type sodium ATP synthase subunit B"
                     /protein_id="YP_005812237.1"
                     /db_xref="GI:385244393"
                     /db_xref="GeneID:12387790"
                     /translation="MQTIYTKITDIKGNLITVEAEGASLGELVQIERADGRSSYASVL
                     RFDARKVTLQVFGGTSGLSTGDKVIFLGRPMEVIYGDSLLGRRFNGTGKPIDREDECF
                     GEPIPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNALLMR
                     IAAQTDADIVIIGGMGLTFVDYNFFVKESQRLGFADKCVMFIHKAVDAPVECVLIPDM
                     ALACAERFALEQKKNVLVLLTDMTAFADALKEMAITMDQIPANRGYPGSLYSDLAVRY
                     EKAVDIAQGGSITLISVTTMPGDDITHPVPDNTGFITEGQFYLKDNRIDPFGSLSRLK
                     QLVIGKKTREDHGDLANALIRLYADSRKSAERMSMGFKLSNWDKKLLAFSELFEARLM
                     SLEVNIPLEEALDIGWKILSQSFHSEEVGIKEQLIQKYWPKACLHK"
     misc_feature    complement(343473..344783)
                     /gene="atpB"
                     /locus_tag="CTDLC_0307"
                     /note="V-type ATP synthase subunit B; Provisional; Region:
                     PRK02118"
                     /db_xref="CDD:179373"
     misc_feature    complement(344568..344762)
                     /gene="atpB"
                     /locus_tag="CTDLC_0307"
                     /note="ATP synthase alpha/beta family, beta-barrel domain;
                     Region: ATP-synt_ab_N; pfam02874"
                     /db_xref="CDD:251583"
     misc_feature    complement(343785..344564)
                     /gene="atpB"
                     /locus_tag="CTDLC_0307"
                     /note="V/A-type ATP synthase (non-catalytic) subunit B.
                     These ATPases couple ATP hydrolysis to the build up of a
                     H+ gradient, but V-type ATPases do not catalyze the
                     reverse reaction. The Vacuolar (V-type) ATPase is found in
                     the membranes of vacuoles, the golgi...; Region:
                     V_A-ATPase_B; cd01135"
                     /db_xref="CDD:238555"
     misc_feature    complement(344319..344342)
                     /gene="atpB"
                     /locus_tag="CTDLC_0307"
                     /note="Walker A motif homologous position; other site"
                     /db_xref="CDD:238555"
     misc_feature    complement(344064..344075)
                     /gene="atpB"
                     /locus_tag="CTDLC_0307"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:238555"
     gene            complement(344786..346561)
                     /gene="atpA"
                     /locus_tag="CTDLC_0308"
                     /db_xref="GeneID:12387791"
     CDS             complement(344786..346561)
                     /gene="atpA"
                     /locus_tag="CTDLC_0308"
                     /EC_number="3.6.3.14"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit alpha"
                     /protein_id="YP_005812238.1"
                     /db_xref="GI:385244394"
                     /db_xref="GeneID:12387791"
                     /translation="MVATSKQTTQGYVVEAYGNLLRVHVDGHVRQGEVAYVSVDDTWL
                     KAEIIEVVGDEVKIQVFEETQGISRGALVTFSGHLLEAELGPGLLQGIFDGLQNRLEI
                     LADTSLFLRRGEYVNAICRETVWAYTQKASVGSVLSRGDVLGTVKEGRFDHKIMVPFS
                     CFEEVTITWVISSGNYTVDTVVAKGRTSTGEELEFTMVQKWPIKQAFLEGEKVPSHEI
                     MDVGLRVLDTQIPVLKGGTFCTPGPFGAGKTVLQHHLSKYAAVDIVVLCACGERAGEV
                     VEILQEFPHLTDPHTGQSLMHRTCIICNTSSMPVAARESSIYLGITIAEYYRQMGLHI
                     LLLADSTSRWAQALREISGRLEEIPGEEAFPAYLASRIAAFYERGGAVKMKDGSEGSL
                     TICGAVSPAGGNFEEPVTQATLSVVGAFCGLSKARADARRYPSIDPMISWSKYLDSVA
                     EILEKKVPGWGESVKQASRFLEEGAEIGKRIEVVGEEGISMEDMEIFLKSELYDFCYL
                     QQNAFDAEDCYCPFDRQIELFSLMNHIFNSRFCFDCPDNARSFFLELQSKIKTLNGQK
                     FLSEEYQKGLEVIYKLLESKMVQTV"
     misc_feature    complement(344789..346543)
                     /gene="atpA"
                     /locus_tag="CTDLC_0308"
                     /note="V-type ATP synthase subunit A; Provisional; Region:
                     PRK04192"
                     /db_xref="CDD:235248"
     misc_feature    complement(346331..346525)
                     /gene="atpA"
                     /locus_tag="CTDLC_0308"
                     /note="ATP synthase alpha/beta family, beta-barrel domain;
                     Region: ATP-synt_ab_N; pfam02874"
                     /db_xref="CDD:251583"
     misc_feature    complement(345227..346327)
                     /gene="atpA"
                     /locus_tag="CTDLC_0308"
                     /note="V/A-type ATP synthase catalytic subunit A. These
                     ATPases couple ATP hydrolysis to the build up of a H+
                     gradient, but V-type ATPases do not catalyze the reverse
                     reaction.  The Vacuolar (V-type) ATPase is found in the
                     membranes of vacuoles, the golgi...; Region: V_A-ATPase_A;
                     cd01134"
                     /db_xref="CDD:238554"
     misc_feature    complement(345815..345838)
                     /gene="atpA"
                     /locus_tag="CTDLC_0308"
                     /note="Walker A motif/ATP binding site; other site"
                     /db_xref="CDD:238554"
     misc_feature    complement(345545..345559)
                     /gene="atpA"
                     /locus_tag="CTDLC_0308"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:238554"
     misc_feature    complement(344876..345166)
                     /gene="atpA"
                     /locus_tag="CTDLC_0308"
                     /note="ATP synthase alpha/beta chain, C terminal domain;
                     Region: ATP-synt_ab_C; pfam00306"
                     /db_xref="CDD:249758"
     gene            complement(346555..347355)
                     /locus_tag="CTDLC_0309"
                     /db_xref="GeneID:12387792"
     CDS             complement(346555..347355)
                     /locus_tag="CTDLC_0309"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812239.1"
                     /db_xref="GI:385244395"
                     /db_xref="GeneID:12387792"
                     /translation="MNQCYFLSSFLSPQQPESPPLYSFQEINDLLALNFTDKDWQSYV
                     ILRRFFDLENFAFFWAGKSIPFSFGTITNSNVESLLRLQMWSDEWEFEDFFKDFLLRY
                     KTPQERLTHFSELVRDFLDHYQDYPSEFLRTYFRFKQDLRIILAGFRARVMQKDVSFV
                     LRDEDSSNPIVLHVLMQKDSPNYELPDEFFELRDVLGDYGRLPHMLNQTLSFYEFHKV
                     EEMSRDKYLNTDAILSRLTTYLMAIRSSWASVQKGKELINLMEKGIRW"
     misc_feature    complement(346564..347355)
                     /locus_tag="CTDLC_0309"
                     /note="Protein of unknown function (DUF2764); Region:
                     DUF2764; pfam10962"
                     /db_xref="CDD:256217"
     gene            complement(347522..348169)
                     /gene="atpE"
                     /locus_tag="CTDLC_0310"
                     /db_xref="GeneID:12387793"
     CDS             complement(347522..348169)
                     /gene="atpE"
                     /locus_tag="CTDLC_0310"
                     /EC_number="3.6.3.14"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit E"
                     /protein_id="YP_005812240.1"
                     /db_xref="GI:385244396"
                     /db_xref="GeneID:12387793"
                     /translation="MFFLVSDMADLSAQDKLKQICDALREETLKPAEEEAGSIVHNAR
                     EQAKRIVEEAKEEAQRIIRSAEETADQTLKKGEAALVQAGKRSLENLKQAVETKIFRE
                     SLGEWLDHVATDPEVSAKLVQALVQAVDAQGISGNLSAYIGKHVSARAVNEALGKEIT
                     SKLKEKGVSVGNFSGGAQLKVEERNWVLDMSSEVLLDLLTRFLQKDFREMIFQSC"
     misc_feature    complement(347528..348148)
                     /gene="atpE"
                     /locus_tag="CTDLC_0310"
                     /note="V-type ATP synthase subunit E; Provisional; Region:
                     PRK01005"
                     /db_xref="CDD:179204"
     misc_feature    complement(347528..348142)
                     /gene="atpE"
                     /locus_tag="CTDLC_0310"
                     /note="Archaeal/vacuolar-type H+-ATPase subunit E [Energy
                     production and conversion]; Region: NtpE; COG1390"
                     /db_xref="CDD:224308"
     gene            348257..348967
                     /locus_tag="CTDLC_0311"
                     /db_xref="GeneID:12387794"
     CDS             348257..348967
                     /locus_tag="CTDLC_0311"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812241.1"
                     /db_xref="GI:385244397"
                     /db_xref="GeneID:12387794"
                     /translation="MKRVILCSLLFASLPIVSKAAVEGKPLSRAAQLRERRKDLHVSG
                     KPSPRYALKKRALEAKKNKPSISWITYSNSTYSFLIPNTWQCIDDKTQLPEKLDVLFI
                     GKGAGGLTPTINSAHEIIHKTEDAYIEEILDYHRTNENTLESSIFAHIQAHSSNFTII
                     KTEKNTPWGRVFCLQGVTVIDHTAYVLTSTSTIDDYPNVSLALLKAASSFRLSEKEEA
                     ARGDAILEKALKDLQNGK"
     gene            complement(348975..349367)
                     /locus_tag="CTDLC_0312"
                     /db_xref="GeneID:12387795"
     CDS             complement(348975..349367)
                     /locus_tag="CTDLC_0312"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812242.1"
                     /db_xref="GI:385244398"
                     /db_xref="GeneID:12387795"
                     /translation="MLNKKDVMEKKKQALCFSCPYCCDGNVAFSVIDLENCLACDCCE
                     ASFMFDAEMCDAIRRFSALCLRIYEAKALLGEAAVSVSVQGQSIDVPFQLLFSRFPVF
                     LNLNLAGKLVRVRFMFDSLRGEVLYHRG"
     gene            complement(349391..350434)
                     /gene="tal"
                     /locus_tag="CTDLC_0313"
                     /db_xref="GeneID:12387796"
     CDS             complement(349391..350434)
                     /gene="tal"
                     /locus_tag="CTDLC_0313"
                     /EC_number="2.2.1.2"
                     /codon_start=1
                     /transl_table=11
                     /product="Transaldolase"
                     /protein_id="YP_005812243.1"
                     /db_xref="GI:385244399"
                     /db_xref="GeneID:12387796"
                     /translation="MNSIVFFGRLHLKSKIDKVFMSSQFDQLKLWSVLVGDTGDPALI
                     KTLGVQDATTNPSLILKVAQEPKYQSMLTEAISWGIRQNGDDVQTLTFVLDKIQVNLG
                     LEILKHVPGRVSLEIDARLSFNTEAMVQRAIFLSQLFEKMGGDKKRLLVKIPGTWEGI
                     CAAEVLESQGIACNVTLIFNLVQAIAAAKAKVTLVSPFVGRIYDWWIAAYGAEGYSIE
                     ADPGVASVANIYSYYKKFDIPTQIMAASFRTKEQVLALAGCDFLTISPKLLEELKKDQ
                     QPVERKLSVEEAKKLDIQPVELSESVFRFLMNEDAMATEKLAEGIRIFSGDTQILESA
                     VTEFIRQIAAQEA"
     misc_feature    complement(349412..350374)
                     /gene="tal"
                     /locus_tag="CTDLC_0313"
                     /note="transaldolase-like protein; Provisional; Region:
                     PTZ00411"
                     /db_xref="CDD:240406"
     misc_feature    complement(349439..350368)
                     /gene="tal"
                     /locus_tag="CTDLC_0313"
                     /note="Transaldolases including both TalA and TalB;
                     Region: Transaldolase_TalAB; cd00957"
                     /db_xref="CDD:188644"
     misc_feature    complement(order(349832..349834,349847..349849,
                     349907..349909,349913..349915,349979..349981,
                     350087..350089,350093..350095,350267..350272,
                     350276..350278,350324..350326))
                     /gene="tal"
                     /locus_tag="CTDLC_0313"
                     /note="active site"
                     /db_xref="CDD:188644"
     misc_feature    complement(order(349469..349471,349481..349483,
                     349490..349492,349508..349513,349523..349525,
                     349532..349534,350063..350065))
                     /gene="tal"
                     /locus_tag="CTDLC_0313"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:188644"
     misc_feature    complement(349979..349981)
                     /gene="tal"
                     /locus_tag="CTDLC_0313"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:188644"
     gene            complement(350486..354676)
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /db_xref="GeneID:12387797"
     CDS             complement(350486..354676)
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /EC_number="2.7.7.6"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="YP_005812244.1"
                     /db_xref="GI:385244400"
                     /db_xref="GeneID:12387797"
                     /translation="MFREGSRDDAALVKEGLFDKLEIGIASDVTIRDKWSCGEIKKPE
                     TINYRTFKPEKGGLFCEKIFGPTKDWECYCGKYKKIKHKGIVCDRCGVEVTLSKVRRE
                     RMAHIELAVPIVHIWFFKTTPSRIGNVLGMTASDLERVIYYEEYVVIDPGNTDLVKKQ
                     LLNDAKYREVVEKWGKDAFVAKMGGEAVYDLLKSEDLESLLGELKERLRKTKSQQARM
                     KLAKRLKIVEGFVSSSNRPEWMVLKNIPVVPPDLRPLVPLDGGRFATSDLNDLYRRVI
                     NRNNRLKAILRLKTPEVIVRNEKRMLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEML
                     KGKNGRFRQNLLGKRVDYSGRSVIIVGPELKFNQCGLPKEMALELFEPFIIKRLKDQG
                     SVYTIRSAKKMIQRGAPEVWDVLEEIIKGHPVLLNRAPTLHRLGIQAFEPVLIEGKAI
                     RVHPLVCAAFNADFDGDQMAVHVPLSIEAQLEAKVLMMAPDNIFLPSSGKPVATPSKD
                     MTLGIYYLMADPTYFPEEHGGKTKAFKDEVEVLRALNAGGFILKDEICGSRRDETGRG
                     IHIHEKIKVRIDGQIIETTPGRVFFNTIVPKELGFQNYSMPSKRISELILQCYKKVGL
                     EATVRFLDDLKELGFVQSTKAAISMGLKDVKIPEIKKEILKDAYDKVAVVKKQYEDGI
                     ITDGERHSKTISIWTEVSDLLSNALYSEIKKQTNSKHNPLFLMIDSGARGNKSQLKQL
                     GALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARKGLADTALKTADSGYLTR
                     RLVDVAQDVIITERDCGTLNHIEVSTIRQGSEELLPLKDRVYGRTVSENIYQPGDKSN
                     VLAYAGDVLTSAQAEAIDDAGIESVKIRSTLTCESRRGVCAKCYGLNLANGRLIGLGE
                     AVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVAECDGILVYLDLRVVVDQEGN
                     NLVLNKMGALHLVQDEGRSLSEYKKLLSTKSIESLATFPVELGAKILVNDGAAVAAGQ
                     RIAEVELHNIPIICDKPGFVHYEDLVEGVSTEKVTNKNTGLVELIVKQHRGELHPQIA
                     IYADANMKELVGTYAIPSGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGGLPRVAE
                     LVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLISLTKHLIVQRG
                     DSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHVEIIVRQ
                     MLQKVRITDPGDTTLLFGEDVDKKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTE
                     SFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQHLEK
                     EQEDLVFDFDSEFESVAG"
     misc_feature    complement(350531..354625)
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="DNA-directed RNA polymerase subunit beta';
                     Provisional; Region: PRK00566"
                     /db_xref="CDD:234794"
     misc_feature    complement(352238..354625)
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="Largest subunit (beta') of bacterial DNA-dependent
                     RNA polymerase (RNAP), N-terminal domain; Region:
                     RNAP_beta'_N; cd01609"
                     /db_xref="CDD:259845"
     misc_feature    complement(order(352274..352276,352283..352285,
                     352313..352318,352322..352330,352334..352342,
                     352346..352351,352358..352363,352367..352390,
                     352406..352408,352427..352432,352445..352447,
                     352457..352462,352469..352471,352484..352486,
                     352502..352504,352529..352531,352718..352753,
                     352757..352762,353117..353119,353132..353134,
                     353144..353146,353153..353161,353201..353203,
                     353216..353221,353231..353233,353240..353263,
                     353273..353275,353282..353290,353315..353317,
                     353330..353335,353363..353368,353372..353377,
                     353384..353386,353396..353398,353474..353476,
                     353519..353524,353528..353533,353540..353545,
                     353552..353557,353591..353593,353597..353659,
                     353675..353680,353687..353689,353747..353749,
                     353897..353902,353909..353911,353915..353917,
                     353921..353926,353933..353935,353939..353941,
                     353951..353953,354326..354328,354332..354334,
                     354365..354376,354380..354385,354440..354442,
                     354473..354475,354524..354526,354530..354532,
                     354566..354577,354587..354589,354599..354601,
                     354605..354625))
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="beta and beta' interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:259845"
     misc_feature    complement(order(353468..353473,353477..353479,
                     353663..353668,353693..353695,353702..353704,
                     353732..353734,353765..353767,353774..353779,
                     353783..353809,353819..353830,353834..353836,
                     353843..353848,353858..353860,353867..353869,
                     353876..353893,353903..353905,353912..353917,
                     354248..354253,354386..354388,354434..354436,
                     354440..354442,354470..354472,354476..354478,
                     354533..354535,354539..354547))
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="beta' and sigma factor interface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:259845"
     misc_feature    complement(order(354407..354409,354416..354418,
                     354455..354457,354461..354463))
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="Zn-binding [ion binding]; other site"
                     /db_xref="CDD:259845"
     misc_feature    complement(order(352292..352297,352304..352309,
                     353276..353278,353282..353284,353288..353290,
                     353387..353395,353612..353614,353630..353632,
                     353651..353653,353666..353668,353735..353737,
                     354308..354310))
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="active site region [active]"
                     /db_xref="CDD:259845"
     misc_feature    complement(order(353276..353278,353282..353284,
                     353288..353290))
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="catalytic site [active]"
                     /db_xref="CDD:259845"
     misc_feature    complement(350579..351955)
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="Largest subunit (beta') of Bacterial DNA-dependent
                     RNA polymerase (RNAP), C-terminal domain; Region:
                     RNAP_beta'_C; cd02655"
                     /db_xref="CDD:132721"
     misc_feature    complement(order(350585..350587,351935..351937,
                     351941..351946,351953..351955))
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="Rpb1 (beta') - Rpb6 (omega) interaction site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:132721"
     misc_feature    complement(order(350585..350587,350597..350602,
                     350609..350611,350627..350629,350645..350647,
                     351911..351913,351923..351925))
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="Rpb1 (beta') - Rpb2 (beta) interaction site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:132721"
     misc_feature    complement(order(351500..351505,351860..351880))
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="G-loop; other site"
                     /db_xref="CDD:132721"
     misc_feature    complement(order(350687..350692,350735..350737,
                     351224..351226))
                     /gene="rpoC"
                     /locus_tag="CTDLC_0314"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:132721"
     gene            complement(354701..358459)
                     /gene="rpoB"
                     /locus_tag="CTDLC_0315"
                     /db_xref="GeneID:12387798"
     CDS             complement(354701..358459)
                     /gene="rpoB"
                     /locus_tag="CTDLC_0315"
                     /EC_number="2.7.7.6"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="YP_005812245.1"
                     /db_xref="GI:385244401"
                     /db_xref="GeneID:12387798"
                     /translation="MFKCPERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERE
                     NIGLEEVFREIFPIKSYNEATILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFRLT
                     DETGIKEEEVYMGTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEKHSKGNVLFS
                     FRIIPYRGSWLEAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFSV
                     EERSLRLEKDFVALVGKVLADNVVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIA
                     VGADENHPIIKMLAKDPTDSYEAALKDFYRRLRPGEPATLVNARSTIMRLFFDAKRYN
                     LGRVGRYKLNKKLGFPLDDETLSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLA
                     NRRVRSVGELIQNHCRSGLARMEKIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDF
                     FSRSQLSQFMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVRDVHASHYGRICPIET
                     PEGPNIGLITSLSSFAKINEFGFIETPYRVVRDGIVTDEIEYMTADVEEECVIAQASA
                     ELDEYDMFKTPVCWARYKGEAFEADTSTVTHMDVSPKQLVSVVTGLIPFLEHDDANRA
                     LMGSNMQRQAVPLLKTEAAIVGTGLEGRAAKDSGAIIVAQEDGVVEYVDSYEIVVAKK
                     NNPTLKDRYQLKKFLRSNSGTCINQTPLCSVGDVVTHGDVLADGPATDKGELALGKNV
                     LVAFMPWYGYNFEDAIIISERLIKQDAYTSIYIEEFELTARDTKLGKEEITRDIPNVS
                     EEVLANLGEDGVVRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAADVKDA
                     SLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEAVHLKDLQKEYKSQLAQLKVEHRE
                     KLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETIELLERESLVDLLMAPCDMYDVL
                     KDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIRQVKVYVASKRKLQVGDKMAG
                     RHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGI
                     YVKTPVFEGFPESRIWDMMIEQGLPEDGKSYLFDGKTGERFDSKVVVGYIYMLKLSHL
                     IADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILTVKSD
                     DVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVVDA"
     misc_feature    complement(354722..358453)
                     /gene="rpoB"
                     /locus_tag="CTDLC_0315"
                     /note="DNA-directed RNA polymerase subunit beta; Reviewed;
                     Region: rpoB; PRK00405"
                     /db_xref="CDD:234749"
     misc_feature    complement(354722..358396)
                     /gene="rpoB"
                     /locus_tag="CTDLC_0315"
                     /note="RNA polymerase beta subunit. RNA polymerases
                     catalyse the DNA dependent polymerization of RNA.
                     Prokaryotes contain a single RNA polymerase compared to
                     three in eukaryotes (not including mitochondrial. and
                     chloroplast polymerases). Each RNA polymerase...; Region:
                     RNA_pol_B_RPB2; cd00653"
                     /db_xref="CDD:238353"
     misc_feature    complement(order(356012..356014,356018..356026,
                     356036..356038,356042..356044,356153..356155,
                     358199..358201))
                     /gene="rpoB"
                     /locus_tag="CTDLC_0315"
                     /note="RPB12 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    complement(357269..358039)
                     /gene="rpoB"
                     /locus_tag="CTDLC_0315"
                     /note="RNA polymerase beta subunit; Region:
                     RNA_pol_Rpb2_1; cl19478"
                     /db_xref="CDD:267831"
     misc_feature    complement(order(354722..354724,354728..354739,
                     354743..354745,354749..354754,354758..354760,
                     354764..354766,354776..354778,354845..354847,
                     354857..354874,354878..354895,354899..354901,
                     354905..354910,354914..354916,354926..354934,
                     354995..355000,355004..355012,355019..355021,
                     355058..355060,355064..355072,355094..355096,
                     355175..355177,355226..355228,355238..355240,
                     355253..355255,355262..355264,355271..355273,
                     355277..355279,355343..355345,355349..355351,
                     355355..355357,356198..356206,356210..356212,
                     356219..356230,356597..356599,356603..356611,
                     356663..356665,356945..356947,356960..356962,
                     356969..356971,356975..356983,356987..356989))
                     /gene="rpoB"
                     /locus_tag="CTDLC_0315"
                     /note="RPB1 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    complement(356657..356854)
                     /gene="rpoB"
                     /locus_tag="CTDLC_0315"
                     /note="RNA polymerase beta subunit external 1 domain;
                     Region: RNA_pol_Rpb2_45; pfam10385"
                     /db_xref="CDD:255954"
     misc_feature    complement(order(355055..355057,355106..355108,
                     355199..355201,355205..355210,355289..355291,
                     355328..355330,356165..356167,356174..356176,
                     356237..356239,356243..356245,356534..356539))
                     /gene="rpoB"
                     /locus_tag="CTDLC_0315"
                     /note="RPB10 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    complement(order(355088..355090,355331..355333,
                     356168..356170,356210..356212))
                     /gene="rpoB"
                     /locus_tag="CTDLC_0315"
                     /note="RPB11 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     misc_feature    complement(order(355064..355066,355070..355093,
                     355304..355309,355313..355315,355322..355330,
                     355403..355405,355409..355411,356153..356155,
                     356165..356170))
                     /gene="rpoB"
                     /locus_tag="CTDLC_0315"
                     /note="RPB3 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238353"
     gene            complement(358820..359290)
                     /gene="rplL"
                     /locus_tag="CTDLC_0316"
                     /db_xref="GeneID:12387799"
     CDS             complement(358820..359290)
                     /gene="rplL"
                     /locus_tag="CTDLC_0316"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L12"
                     /protein_id="YP_005812246.1"
                     /db_xref="GI:385244402"
                     /db_xref="GeneID:12387799"
                     /translation="MLFLVSTRKQKKLKSSVNILKNKGDKVTTESLETLVEQLSGLTV
                     LELSQLKKLLEEKWDVTAAAPVVAVAGAAAAGDAPASAEPTEFAVILEDVPSDKKIGV
                     LKVVREVTGLALKEAKEMTEGLPKTVKEKTSKSDAEDTVKKLQEAGAKAVAKGL"
     misc_feature    complement(358835..359203)
                     /gene="rplL"
                     /locus_tag="CTDLC_0316"
                     /note="Ribosomal protein L7/L12. Ribosomal protein L7/L12
                     refers to the large ribosomal subunit proteins L7 and L12,
                     which are identical except that L7 is acetylated at the N
                     terminus. It is a component of the L7/L12 stalk, which is
                     located at the surface of...; Region: Ribosomal_L7_L12;
                     cd00387"
                     /db_xref="CDD:100102"
     misc_feature    complement(order(358883..358885,358892..358894,
                     358898..358903,358943..358948,358952..358954,
                     358958..358963,358967..358969,359033..359038,
                     359066..359074,359078..359083,359090..359092,
                     359126..359128,359135..359137,359144..359149,
                     359156..359164,359201..359203))
                     /gene="rplL"
                     /locus_tag="CTDLC_0316"
                     /note="core dimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:100102"
     misc_feature    complement(order(359117..359119,359132..359134,
                     359171..359173,359183..359185,359192..359194))
                     /gene="rplL"
                     /locus_tag="CTDLC_0316"
                     /note="peripheral dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:100102"
     misc_feature    complement(order(359117..359119,359126..359128,
                     359138..359143,359150..359152))
                     /gene="rplL"
                     /locus_tag="CTDLC_0316"
                     /note="L10 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100102"
     misc_feature    complement(order(358937..358939,358946..358951,
                     358970..358972,358979..358984,358991..358996))
                     /gene="rplL"
                     /locus_tag="CTDLC_0316"
                     /note="L11 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100102"
     misc_feature    complement(order(358937..358939,358946..358951,
                     358970..358972,358979..358981,358991..358993))
                     /gene="rplL"
                     /locus_tag="CTDLC_0316"
                     /note="putative EF-Tu interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:100102"
     misc_feature    complement(order(358970..358972,358979..358984,
                     358991..358993))
                     /gene="rplL"
                     /locus_tag="CTDLC_0316"
                     /note="putative EF-G interaction site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:100102"
     gene            complement(359244..359762)
                     /gene="rplJ"
                     /locus_tag="CTDLC_0317"
                     /db_xref="GeneID:12387800"
     CDS             complement(359244..359762)
                     /gene="rplJ"
                     /locus_tag="CTDLC_0317"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="YP_005812247.1"
                     /db_xref="GI:385244403"
                     /db_xref="GeneID:12387800"
                     /translation="MKEEKKLLLREVEEKITASQGFILLRYLGFTAAHSRSFRNNLSG
                     VSAEFEVLKKKIFFKALETSGVEMDPEGGEGHLGVVFAYGDPVSAAKQVLDFNKQHND
                     SLVFLAGRIDNASLSGREVEAVAKLPSMKELRQQVVGLIAAPMSQVAGIMNSVLSGVI
                     SCVDQKAEKTQE"
     misc_feature    complement(359292..359762)
                     /gene="rplJ"
                     /locus_tag="CTDLC_0317"
                     /note="Ribosomal protein L10 family, L10 subfamily;
                     composed of bacterial 50S ribosomal protein and eukaryotic
                     mitochondrial 39S ribosomal protein, L10. L10 occupies the
                     L7/L12 stalk of the ribosome. The N-terminal domain (NTD)
                     of L10 interacts with L11 protein...; Region:
                     Ribosomal_L10; cd05797"
                     /db_xref="CDD:240223"
     misc_feature    complement(order(359586..359588,359595..359606,
                     359736..359738,359745..359750))
                     /gene="rplJ"
                     /locus_tag="CTDLC_0317"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:240223"
     misc_feature    complement(order(359295..359300,359304..359309,
                     359316..359324,359328..359345,359349..359354,
                     359361..359366,359373..359375,359421..359423,
                     359430..359432,359502..359504))
                     /gene="rplJ"
                     /locus_tag="CTDLC_0317"
                     /note="Interface with L7/L12 ribosomal proteins
                     [polypeptide binding]; other site"
                     /db_xref="CDD:240223"
     gene            complement(359784..360482)
                     /gene="rplA"
                     /locus_tag="CTDLC_0318"
                     /db_xref="GeneID:12387801"
     CDS             complement(359784..360482)
                     /gene="rplA"
                     /locus_tag="CTDLC_0318"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="YP_005812248.1"
                     /db_xref="GI:385244404"
                     /db_xref="GeneID:12387801"
                     /translation="MTKHGKRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDV
                     SVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVE
                     KIKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMPTPKAGTVTTDVVKTVAELRKGK
                     IEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQYLVNFTISSTM
                     GPGVTVDTRELIAL"
     misc_feature    complement(359811..360410)
                     /gene="rplA"
                     /locus_tag="CTDLC_0318"
                     /note="Ribosomal protein L1.  The L1 protein, located near
                     the E-site of the ribosome, forms part of the L1 stalk
                     along with 23S rRNA.  In bacteria and archaea, L1
                     functions both as a ribosomal protein that binds rRNA, and
                     as a translation repressor that binds...; Region:
                     Ribosomal_L1; cd00403"
                     /db_xref="CDD:238235"
     misc_feature    complement(order(359820..359822,359826..359831,
                     359967..359969,359973..359975,359979..359981,
                     360342..360344,360348..360350,360354..360356,
                     360360..360362,360369..360377))
                     /gene="rplA"
                     /locus_tag="CTDLC_0318"
                     /note="mRNA/rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:238235"
     gene            complement(360505..360936)
                     /gene="rplK"
                     /locus_tag="CTDLC_0319"
                     /db_xref="GeneID:12387802"
     CDS             complement(360505..360936)
                     /gene="rplK"
                     /locus_tag="CTDLC_0319"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="YP_005812249.1"
                     /db_xref="GI:385244405"
                     /db_xref="GeneID:12387802"
                     /translation="MNMSNKKIIKIIKLQIPGGKANPAPPIGPALGAAGVNIMGFCKE
                     FNAATQDRPGDLLPVVITVYSDKTFSFVMKQSPVSSLIKKALGLESGSKIPNRNKVGK
                     LTRAQITVIAEQKMKDMDVVLLESAERMVEGTARSMGVDVE"
     misc_feature    complement(360508..360897)
                     /gene="rplK"
                     /locus_tag="CTDLC_0319"
                     /note="50S ribosomal protein L11; Validated; Region: rplK;
                     PRK00140"
                     /db_xref="CDD:234661"
     misc_feature    complement(360511..360897)
                     /gene="rplK"
                     /locus_tag="CTDLC_0319"
                     /note="Ribosomal protein L11. Ribosomal protein L11,
                     together with proteins L10 and L7/L12, and 23S rRNA, form
                     the L7/L12 stalk on the surface of the large subunit of
                     the ribosome. The homologous eukaryotic cytoplasmic
                     protein is also called 60S ribosomal...; Region:
                     Ribosomal_L11; cd00349"
                     /db_xref="CDD:100101"
     misc_feature    complement(order(360838..360840,360850..360852))
                     /gene="rplK"
                     /locus_tag="CTDLC_0319"
                     /note="putative thiostrepton binding site; other site"
                     /db_xref="CDD:100101"
     misc_feature    complement(order(360523..360531,360535..360540,
                     360547..360552,360559..360561,360571..360579,
                     360592..360594,360667..360669,360688..360690,
                     360700..360708,360838..360840))
                     /gene="rplK"
                     /locus_tag="CTDLC_0319"
                     /note="23S rRNA interface [nucleotide binding]; other
                     site"
                     /db_xref="CDD:100101"
     misc_feature    complement(order(360574..360579,360586..360591,
                     360721..360726,360730..360732,360742..360753,
                     360757..360759))
                     /gene="rplK"
                     /locus_tag="CTDLC_0319"
                     /note="L7/L12 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100101"
     misc_feature    complement(order(360640..360642,360649..360651))
                     /gene="rplK"
                     /locus_tag="CTDLC_0319"
                     /note="L25 interface [polypeptide binding]; other site"
                     /db_xref="CDD:100101"
     gene            complement(361036..361584)
                     /gene="nusG"
                     /locus_tag="CTDLC_0320"
                     /db_xref="GeneID:12387803"
     CDS             complement(361036..361584)
                     /gene="nusG"
                     /locus_tag="CTDLC_0320"
                     /note="protein NusG"
                     /codon_start=1
                     /transl_table=11
                     /product="Transcription antitermination protein"
                     /protein_id="YP_005812250.1"
                     /db_xref="GI:385244406"
                     /db_xref="GeneID:12387803"
                     /translation="MFKWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENV
                     MEVKKGEHKIVEKYIWPGYLLVKMHLTDESWSYVKKTQGVVEFLGGGAPVALSEEEVK
                     NILADLEEKKSGVVQKHKFEVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGR
                     ETRVDDLEFWQVEEVVPGQESE"
     misc_feature    complement(361261..361578)
                     /gene="nusG"
                     /locus_tag="CTDLC_0320"
                     /note="Bacterial N-Utilization Substance G (NusG)
                     N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1;
                     cd09891"
                     /db_xref="CDD:193580"
     misc_feature    complement(361063..361575)
                     /gene="nusG"
                     /locus_tag="CTDLC_0320"
                     /note="transcription termination/antitermination factor
                     NusG; Region: nusG; TIGR00922"
                     /db_xref="CDD:233188"
     misc_feature    complement(order(361273..361275,361297..361299,
                     361390..361392,361396..361398,361405..361407,
                     361465..361467,361567..361569))
                     /gene="nusG"
                     /locus_tag="CTDLC_0320"
                     /note="putative homodimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:193580"
     misc_feature    complement(361066..361227)
                     /gene="nusG"
                     /locus_tag="CTDLC_0320"
                     /note="NusG contains an NGN domain at its N-terminus and
                     KOW motif at its C-terminus; Region: KOW_NusG; cd06091"
                     /db_xref="CDD:240515"
     misc_feature    complement(order(361072..361077,361087..361089,
                     361093..361101,361105..361113,361138..361140,
                     361174..361176,361183..361197))
                     /gene="nusG"
                     /locus_tag="CTDLC_0320"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240515"
     misc_feature    complement(361186..361197)
                     /gene="nusG"
                     /locus_tag="CTDLC_0320"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:240515"
     gene            complement(361588..361836)
                     /gene="secE"
                     /locus_tag="CTDLC_0321"
                     /db_xref="GeneID:12387804"
     CDS             complement(361588..361836)
                     /gene="secE"
                     /locus_tag="CTDLC_0321"
                     /note="protein SecE"
                     /codon_start=1
                     /transl_table=11
                     /product="Protein translocase subunit"
                     /protein_id="YP_005812251.1"
                     /db_xref="GI:385244407"
                     /db_xref="GeneID:12387804"
                     /translation="MGQDHRRKFLKKVSFVKKQAAFAGNFIEEIKKIEWVNKRDLKRY
                     VKIVLMNIFGFGFSIYCVDLALRKSLSLFGKVTSFFFG"
     misc_feature    complement(361621..361836)
                     /gene="secE"
                     /locus_tag="CTDLC_0321"
                     /note="Preprotein translocase subunit SecE [Intracellular
                     trafficking and secretion]; Region: SecE; COG0690"
                     /db_xref="CDD:223762"
     gene            complement(361866..361938)
                     /locus_tag="CTDLC_r029"
                     /db_xref="GeneID:12387805"
     tRNA            complement(361866..361938)
                     /locus_tag="CTDLC_r029"
                     /product="tRNA-Trp"
                     /db_xref="GeneID:12387805"
     gene            complement(361979..363178)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /db_xref="GeneID:12387806"
     CDS             complement(361979..363178)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /codon_start=1
                     /transl_table=11
                     /product="Protein Translation Elongation Factor Tu
                     (EF-TU)"
                     /protein_id="YP_005812252.1"
                     /db_xref="GI:385244408"
                     /db_xref="GeneID:12387806"
                     /translation="MRIFEMSKETFQRNKPHINIGTIGHVDHGKTTLTAAITRALSGD
                     GLADFRDYSSIDNTPEEKARGITINASHVEYETANRHYAHVDCPGHADYVKNMITGAA
                     QMDGAILVVSATDGAMPQTKEHILLARQVGVPYIVVFLNKIDMISEEDAELVDLVEME
                     LVELLEEKGYKGCPIIRGSALKALEGDAAYIEKVRELMQAVDDNIPTPEREIDKPFLM
                     PIEDVFSISGRGTVVTGRIERGIVKVSDKVQLVGLRDTKETIVTGVEMFRKELPEGRA
                     GENVGLLLRGIGKNDVERGMVVCLPNSVKPHTQFKCAVYVLQKEEGGRHKPFFTGYRP
                     QFFFRTTDVTGVVTLPEGIEMVMPGDNVEFEVQLISPVALEEGMRFAIREGGRTIGAG
                     TISKIIA"
     misc_feature    complement(361982..363163)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="elongation factor Tu; Reviewed; Region: PRK12735"
                     /db_xref="CDD:183708"
     misc_feature    complement(362555..363133)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="Elongation Factor Tu (EF-Tu) GTP-binding proteins;
                     Region: EF_Tu; cd01884"
                     /db_xref="CDD:206671"
     misc_feature    complement(363086..363109)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="G1 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    complement(order(362624..362629,362699..362701,
                     362711..362713,362810..362812,362819..362830,
                     362834..362839,362906..362911,362963..362968,
                     363050..363052,363062..363067,363074..363076,
                     363083..363088,363098..363100,363104..363106))
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="GEF interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:206671"
     misc_feature    complement(order(362636..362644,362747..362749,
                     362753..362758,363023..363025,363083..363100))
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206671"
     misc_feature    complement(362966..362998)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206671"
     misc_feature    complement(362978..362980)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="G2 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    complement(362912..362923)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="G3 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    complement(362861..362917)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206671"
     misc_feature    complement(362747..362758)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="G4 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    complement(362636..362644)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="G5 box; other site"
                     /db_xref="CDD:206671"
     misc_feature    complement(362273..362533)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="EFTU_II: Elongation factor Tu domain II. Elongation
                     factors Tu (EF-Tu) are three-domain GTPases with an
                     essential function in the elongation phase of mRNA
                     translation. The GTPase center of EF-Tu is in the
                     N-terminal domain (domain I), also known as the...;
                     Region: EFTU_II; cd03697"
                     /db_xref="CDD:239668"
     misc_feature    complement(361997..362266)
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="Domain III of elongation factor (EF) Tu. Ef-Tu
                     consists of three structural domains, designated I, II and
                     III. Domain III adopts a beta barrel structure. Domain III
                     is involved in binding to both charged tRNA and binding to
                     elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707"
                     /db_xref="CDD:239678"
     misc_feature    complement(order(362006..362008,362036..362044,
                     362162..362164,362216..362224,362228..362230))
                     /gene="tuf"
                     /locus_tag="CTDLC_0322"
                     /note="Antibiotic Binding Site [chemical binding]; other
                     site"
                     /db_xref="CDD:239678"
     gene            complement(363209..363280)
                     /locus_tag="CTDLC_r028"
                     /db_xref="GeneID:12387807"
     tRNA            complement(363209..363280)
                     /locus_tag="CTDLC_r028"
                     /product="tRNA-Thr"
                     /db_xref="GeneID:12387807"
     gene            complement(363511..363732)
                     /gene="infA"
                     /locus_tag="CTDLC_0323"
                     /db_xref="GeneID:12387808"
     CDS             complement(363511..363732)
                     /gene="infA"
                     /locus_tag="CTDLC_0323"
                     /codon_start=1
                     /transl_table=11
                     /product="Bacterial Protein Translation Initiation Factor
                     1 (IF-1)"
                     /protein_id="YP_005812253.1"
                     /db_xref="GI:385244409"
                     /db_xref="GeneID:12387808"
                     /translation="MAKKEDTIVLEGRVEELLPGMHFRVMLENGVPITAHLCGKMRMS
                     NIRLLVGDRVTVEMSTYDLTKARVVYRHR"
     misc_feature    complement(363520..363711)
                     /gene="infA"
                     /locus_tag="CTDLC_0323"
                     /note="S1_IF1: Translation Initiation Factor IF1, S1-like
                     RNA-binding domain. IF1 contains an S1-like RNA-binding
                     domain, which is found in a wide variety of RNA-associated
                     proteins. Translation initiation includes a number of
                     interrelated steps preceding the...; Region: S1_IF1;
                     cd04451"
                     /db_xref="CDD:239898"
     misc_feature    complement(order(363532..363534,363538..363540,
                     363589..363600,363613..363618,363625..363627,
                     363661..363663,363679..363687))
                     /gene="infA"
                     /locus_tag="CTDLC_0323"
                     /note="rRNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:239898"
     misc_feature    complement(order(363520..363522,363613..363615,
                     363625..363627))
                     /gene="infA"
                     /locus_tag="CTDLC_0323"
                     /note="predicted 30S ribosome binding site; other site"
                     /db_xref="CDD:239898"
     gene            364144..365055
                     /locus_tag="CTDLC_0324"
                     /db_xref="GeneID:12387809"
     CDS             364144..365055
                     /locus_tag="CTDLC_0324"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812254.1"
                     /db_xref="GI:385244410"
                     /db_xref="GeneID:12387809"
                     /translation="MVKAAHPLHSSISGALPLHSSRGGAYHDSLGDLHSPISLTPPAL
                     SVLTPEPAQSKSRVQAVANTIGDFLQRNWKHLLLYILAWSLILICHSSVALVLSIWLG
                     IGFGAGVVLGIISANFLDKENKYPHLNSLWNITNHGLQQLDPNGTRQVLLATVIASIS
                     ALIYASPQAIGFIIGAFLGHQTSSLAVYGYRFKSGPGYIADQELFDKQEKRIRQAIMQ
                     CRLIRNQMILQRRLDTLQKRAHRPGQSQTITIRPLTNRISLPEEMEHEILGKKPQVVI
                     AMLDNKIAQLNQSLVQLYDRPTRVIEQ"
     misc_feature    <364357..364515
                     /locus_tag="CTDLC_0324"
                     /note="Colicin pore forming domain; Region: Colicin;
                     pfam01024"
                     /db_xref="CDD:144565"
     gene            365052..365498
                     /locus_tag="CTDLC_0325"
                     /db_xref="GeneID:12387810"
     CDS             365052..365498
                     /locus_tag="CTDLC_0325"
                     /codon_start=1
                     /transl_table=11
                     /product="SufE protein probably involved in Fe-S center
                     assembly"
                     /protein_id="YP_005812255.1"
                     /db_xref="GI:385244411"
                     /db_xref="GeneID:12387810"
                     /translation="MILTTPSEHKACLEKQEKAVALLFPENFVKDTFYKQLLQIGRTA
                     KPFPKEFLTKENLVLGCQSDLYLHGEFKNNAAFFFTYTEALISSGVAVLFSDIYSGET
                     PETILTCKPLFFEKLSRHLSMGRSRGGESLFLNMQRIAVQYLARKT"
     misc_feature    365067..365483
                     /locus_tag="CTDLC_0325"
                     /note="Cysteine desulfurase SufE subunit
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: sufE; COG2166"
                     /db_xref="CDD:225077"
     gene            complement(365550..367241)
                     /locus_tag="CTDLC_0326"
                     /db_xref="GeneID:12387811"
     CDS             complement(365550..367241)
                     /locus_tag="CTDLC_0326"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812256.1"
                     /db_xref="GI:385244412"
                     /db_xref="GeneID:12387811"
                     /translation="MGGDSSPSSDLIDLSLDSAANRRSGVRVCDFSDDDDDDNRIPFV
                     EVGYVNASGLTHRSVWGESFQLSELFHQPVTAIPNAGGMACNLLARGLGVAGCFPISA
                     HHPTVQALLRAWDRFFSRVSDGRFLQIYYGDGGLFVERALQLISCPLQRARIRVVGIN
                     PSFFVTVSDNRHFYTSPGSCGRILDMSGYLSARRDGCVSHVPFSPHSQSITPGVGDAC
                     FELGLRMEFIRLAGLSSLSAASSPTSEDSDSSRLQLVRVVSSEDSVAFARLYAALNED
                     MTSSVRAANPFPFSYVRLILLLTTLCRHTLTTTKAAYSYTPVSWEALDMLDSGFTASY
                     VGGVMELSCGYGVTIQLLLQNDPRQSCLRNLFFWMESTLTPVILLDIAERHWPALWDR
                     VLGLGMRITTPSVYREERARVSESNSQAVELFGDDRRDRYRSRQHAAVGTSVELVSVV
                     CGALVQLMFLGIDGFSLRLPEICREVPCNNTSTPNSTVIANSTTPSLNNTSTCSGNST
                     TRPVLPSITGIYETDVQTTGVARTLNVIRMIWCGVMLLYFLYTAFRLVRNARRRN"
     misc_feature    complement(365556..367235)
                     /locus_tag="CTDLC_0326"
                     /note="Protein of unknown function (DUF687); Region:
                     DUF687; pfam05095"
                     /db_xref="CDD:147328"
     gene            complement(367606..367788)
                     /locus_tag="CTDLC_032602"
                     /db_xref="GeneID:12387812"
     CDS             complement(367606..367788)
                     /locus_tag="CTDLC_032602"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812257.1"
                     /db_xref="GI:385244413"
                     /db_xref="GeneID:12387812"
                     /translation="MNTLSFRNAFALISESGLQQQFSGCVCSQMIASYEVVFSQMMHP
                     VTKRWVSLTEGWTEGG"
     gene            368395..368467
                     /locus_tag="CTDLC_r003"
                     /db_xref="GeneID:12387813"
     tRNA            368395..368467
                     /locus_tag="CTDLC_r003"
                     /product="tRNA-Met"
                     /db_xref="GeneID:12387813"
     gene            complement(368508..369134)
                     /gene="trpC"
                     /locus_tag="CTDLC_0327"
                     /db_xref="GeneID:12387814"
     CDS             complement(368508..369134)
                     /gene="trpC"
                     /locus_tag="CTDLC_0327"
                     /EC_number="5.3.1.24"
                     /codon_start=1
                     /transl_table=11
                     /product="N-(5'-phosphoribosyl)anthranilate isomerase"
                     /protein_id="YP_005812258.1"
                     /db_xref="GI:385244414"
                     /db_xref="GeneID:12387814"
                     /translation="MKVKICGITHPDDAREAAKAGADYIGMIFAKDSRRCVSEEKAKY
                     IVEAIQEGNSEPVGVFPEHSVEEILAITETTGITSIQLSGEDILFKFSQLREHFSIFY
                     VVSVYSNGQPSAALPPMNDAVTVVYDHIGGERGSPFDWKAFSPFQHNNWMLGGGVNLW
                     NIKEGISLLSPRGIDVSSGVECPGILRKDIFLMQALINSAKELSSSTL"
     misc_feature    complement(368535..369128)
                     /gene="trpC"
                     /locus_tag="CTDLC_0327"
                     /note="Phosphoribosylanthranilate isomerase (PRAI)
                     catalyzes the fourth step of the tryptophan biosynthesis,
                     the conversion of N-(5'- phosphoribosyl)-anthranilate
                     (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose
                     5-phosphate (CdRP). Most PRAIs are...; Region: PRAI;
                     cd00405"
                     /db_xref="CDD:238237"
     misc_feature    complement(order(368601..368606,368610..368612,
                     368751..368753,368886..368888,368892..368894,
                     369051..369053,369117..369119,369123..369125))
                     /gene="trpC"
                     /locus_tag="CTDLC_0327"
                     /note="active site"
                     /db_xref="CDD:238237"
     gene            369331..370155
                     /gene="tpiA"
                     /locus_tag="CTDLC_0328"
                     /db_xref="GeneID:12387815"
     CDS             369331..370155
                     /gene="tpiA"
                     /locus_tag="CTDLC_0328"
                     /EC_number="5.3.1.1"
                     /codon_start=1
                     /transl_table=11
                     /product="triosephosphate isomerase"
                     /protein_id="YP_005812259.1"
                     /db_xref="GI:385244415"
                     /db_xref="GeneID:12387815"
                     /translation="MFTDKETHRKPFPTWAHLLHSEPSKQFVFGNWKMNKTLTEAQTF
                     LKSFISSDILSNPQIITGIIPPFTLLSACQQAVSDSPIFLGAQTTHEADSGAFTGEIS
                     APMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESG
                     ATQDILLNQLTTGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASL
                     FSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFLSIIQQIDIP"
     misc_feature    369409..370137
                     /gene="tpiA"
                     /locus_tag="CTDLC_0328"
                     /note="Triosephosphate isomerase (TIM) is a glycolytic
                     enzyme that catalyzes the interconversion of
                     dihydroxyacetone phosphate and
                     D-glyceraldehyde-3-phosphate. The reaction is very
                     efficient and requires neither cofactors nor metal ions.
                     TIM, usually...; Region: TIM; cd00311"
                     /db_xref="CDD:238190"
     misc_feature    order(369421..369423,369427..369429,369682..369684,
                     369892..369894,369910..369912,370030..370032,
                     370087..370089,370093..370098)
                     /gene="tpiA"
                     /locus_tag="CTDLC_0328"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:238190"
     misc_feature    order(369421..369423,369430..369432,369529..369537,
                     369541..369543,369550..369552,369589..369591,
                     369643..369645,369652..369657,369688..369693)
                     /gene="tpiA"
                     /locus_tag="CTDLC_0328"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238190"
     misc_feature    order(369427..369429,369682..369684,369892..369894)
                     /gene="tpiA"
                     /locus_tag="CTDLC_0328"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:238190"
     gene            370091..371719
                     /gene="xseA"
                     /locus_tag="CTDLC_0329"
                     /db_xref="GeneID:12387816"
     CDS             370091..371719
                     /gene="xseA"
                     /locus_tag="CTDLC_0329"
                     /EC_number="3.1.11.6"
                     /codon_start=1
                     /transl_table=11
                     /product="Exodeoxyribonuclease VII large subunit"
                     /protein_id="YP_005812260.1"
                     /db_xref="GI:385244416"
                     /db_xref="GeneID:12387816"
                     /translation="MEEPLYLQRISYPLYNKSISHNSHVPMSITSPPIEVSVLTDSIK
                     NLLEKNFLRVVVKGELSNVSLQTSGHLYFAIKDSKAVLNGAFFHFRSKYFDRKPKDGD
                     YVILHGKLTVYAPRGQYQIVAYALTFSGEGNLLQQFEERKQRLAAEGYFDPKRKKPLP
                     SGARVIGVITSPTGAVIQDILRVLSRRCHQFQVILYPVTVQGATAAQEISQAIQFFNQ
                     NSMGVHALIIARGGGSIEDLWAFNEEELVKSIVASSIPIISAVGHETDFTLCDFASDV
                     RAPTPSAAAEIVCKSSDQYRQELQNLRRYVLSHARQFIAAKKNLLTHWQRHLASVDFY
                     HTAQQTLDYTRAALERGIETKLEYYKQRFAQYRRWLKSDVLIRIEKHLADLNQSLMLS
                     IKNKIYTKKTSLNQLYTSCLKNELLNLQHHTQHSRNILSQLSRRLHIAIASSQQTHQE
                     CLVRLQNELSFTIHHLLTKAKERCQAIQEQASSLNPKNVLKRGFAQLFDFNKHFVIIS
                     AESLKQSDLVRVCLQDGEAVVSVKEVWLNNDKKG"
     misc_feature    370175..371704
                     /gene="xseA"
                     /locus_tag="CTDLC_0329"
                     /note="Exonuclease VII, large subunit [DNA replication,
                     recombination, and repair]; Region: XseA; COG1570"
                     /db_xref="CDD:224486"
     misc_feature    370247..370480
                     /gene="xseA"
                     /locus_tag="CTDLC_0329"
                     /note="ExoVII_LU_OBF: A subfamily of OB folds
                     corresponding to the N-terminal OB-fold domain of
                     Escherichia coli exodeoxyribonuclease VII (ExoVII) large
                     subunit. E. coli ExoVII is composed of two non-identical
                     subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF;
                     cd04489"
                     /db_xref="CDD:239935"
     misc_feature    order(370253..370255,370397..370399,370403..370405,
                     370409..370411,370469..370471)
                     /gene="xseA"
                     /locus_tag="CTDLC_0329"
                     /note="generic binding surface II; other site"
                     /db_xref="CDD:239935"
     misc_feature    order(370268..370276,370304..370315,370319..370321,
                     370337..370345,370349..370351,370394..370396,
                     370415..370423,370448..370456)
                     /gene="xseA"
                     /locus_tag="CTDLC_0329"
                     /note="generic binding surface I; other site"
                     /db_xref="CDD:239935"
     gene            371928..372200
                     /locus_tag="CTDLC_0330"
                     /db_xref="GeneID:12387817"
     CDS             371928..372200
                     /locus_tag="CTDLC_0330"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812261.1"
                     /db_xref="GI:385244417"
                     /db_xref="GeneID:12387817"
                     /translation="MQEISVPEASHLDTVIQRLLVLQKALEDCHSVEAILAIYEEMFS
                     LIQEGETNLNHVEQLSFQLQLNPDGSVAVDTSGNPIKHPFIPGESV"
     gene            372197..374119
                     /gene="dxs"
                     /locus_tag="CTDLC_0331"
                     /db_xref="GeneID:12387818"
     CDS             372197..374119
                     /gene="dxs"
                     /locus_tag="CTDLC_0331"
                     /EC_number="2.2.1.7"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="YP_005812262.1"
                     /db_xref="GI:385244418"
                     /db_xref="GeneID:12387818"
                     /translation="MTYSLLPHIHSPQDLHALSLDKLPVLCDEIRNKIIESLSLTGGH
                     LASNLGGVELTVALHYVFSSPDDQFIFDVGHQSYVHKLLTGRNTEAFSNIRHDNGLSG
                     FTTPQESNHDIFFSGHAGNALSLALGLAKGSSNSSSHILPILGDAAFSCGLTLEALNN
                     IPADLSKFIIVLNDNQMSISENVGNIPQGISHWMYPQKISKLSQKIHSWIQNLPSFLH
                     KKKTLSHKVDIALKSLSHPLFEQFGLHYVGPIDGHNVKKLVQALQMIKDQPQPILFHV
                     CTVKGNGLAEAERDPIRYHGVKAHFQNTSLKKTSGNVELQTPISFPQHAGNILCRLGK
                     KYPQLQVVTPAMSLGSCLEDFRKQFPDRFTDVGIAEGHAVTFSAGIARSGTPVCCSIY
                     STFLHRAMDNVFHDVCMQELPVIFAIDRAGLAFHDGRSHHGIYDLGFLCSMPNMVICQ
                     PRNALVLERLFFSSLLWKSPCAIRYPNIPANEKASNSFFPFSPILPGEAEILCQGDDL
                     LLIALGHMCNTALTVKEHLLDYGISTTVVDPIFIKPLDRKLLQSLLTHHSKVIILEEH
                     SIHGGLGSEFLLFLNQHNIKADVLSLGVPDMFIPHGNPETILNLIGLTSDHITQRILS
                     HFKFSTPIPIERFFKA"
     misc_feature    372200..374089
                     /gene="dxs"
                     /locus_tag="CTDLC_0331"
                     /note="Deoxyxylulose-5-phosphate synthase [Coenzyme
                     metabolism / Lipid metabolism]; Region: Dxs; COG1154"
                     /db_xref="CDD:224076"
     misc_feature    372320..373048
                     /gene="dxs"
                     /locus_tag="CTDLC_0331"
                     /note="Thiamine pyrophosphate (TPP) family, DXS subfamily,
                     TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate
                     synthase (DXS) is a regulatory enzyme of the
                     mevalonate-independent pathway involved in terpenoid
                     biosynthesis. Terpeniods are plant natural products...;
                     Region: TPP_DXS; cd02007"
                     /db_xref="CDD:238965"
     misc_feature    order(372551..372553,372629..372640,372719..372721,
                     372725..372727)
                     /gene="dxs"
                     /locus_tag="CTDLC_0331"
                     /note="TPP-binding site; other site"
                     /db_xref="CDD:238965"
     misc_feature    373163..373624
                     /gene="dxs"
                     /locus_tag="CTDLC_0331"
                     /note="Pyrimidine (PYR) binding domain of
                     1-deoxy-D-xylulose-5-phosphate synthase (DXS),
                     transketolase (TK), and related proteins; Region:
                     TPP_PYR_DXS_TK_like; cd07033"
                     /db_xref="CDD:132916"
     misc_feature    order(373205..373207,373211..373213,373229..373231,
                     373280..373282,373289..373291,373295..373312,
                     373319..373324,373328..373336,373388..373390,
                     373397..373402,373475..373477,373484..373486,
                     373532..373537,373598..373600)
                     /gene="dxs"
                     /locus_tag="CTDLC_0331"
                     /note="PYR/PP interface [polypeptide binding]; other site"
                     /db_xref="CDD:132916"
     misc_feature    order(373229..373231,373289..373291,373298..373306,
                     373385..373390,373394..373396,373475..373477,
                     373481..373483,373508..373513,373517..373522,
                     373526..373528)
                     /gene="dxs"
                     /locus_tag="CTDLC_0331"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:132916"
     misc_feature    order(373298..373300,373304..373306,373379..373381,
                     373388..373390)
                     /gene="dxs"
                     /locus_tag="CTDLC_0331"
                     /note="TPP binding site [chemical binding]; other site"
                     /db_xref="CDD:132916"
     misc_feature    373685..374050
                     /gene="dxs"
                     /locus_tag="CTDLC_0331"
                     /note="Transketolase, C-terminal domain; Region:
                     Transketolase_C; pfam02780"
                     /db_xref="CDD:251527"
     gene            374216..375673
                     /gene="pykF"
                     /locus_tag="CTDLC_0332"
                     /db_xref="GeneID:12387819"
     CDS             374216..375673
                     /gene="pykF"
                     /locus_tag="CTDLC_0332"
                     /EC_number="2.7.1.40"
                     /codon_start=1
                     /transl_table=11
                     /product="Pyruvate kinase"
                     /protein_id="YP_005812263.1"
                     /db_xref="GI:385244419"
                     /db_xref="GeneID:12387819"
                     /translation="MIARTKIICTIGPATNTPEMLEKLLDAGMNVARLNFSHGTHESH
                     GRTIAILKELREKRQVPLAIMLDTKGPEIRLGQVESPIKVQPGDRLTLVSKEILGSKE
                     SGVTLYPSCVFPYVRERAPVLIDDGYIQAVVVNAQEHMVEIEFQNSGEIKSNKSLSIK
                     DIDVALPFMTEKDIADLKFGVEQELDLIAASFVRCNEDIDSMRKVLESFGRPNMPIIA
                     KIENHLGVQNFQEIARAADGIMIARGDLGIELSIVEVPGLQKFMARASRETGRFCITA
                     TQMLESMIRNPLPTRAEVSDVANAIYDGTSAVMLSGETALGAHPVHAVKTMRSIIQET
                     EKTFDYHAFFQLNDKNSALKVSPYLEAIGFSGIQIAEKASAKAIIVYTQTGGSPMFLS
                     KYRPYLPIIAVTPNRNVYYRLAVEWGVYPMLTLESNRTVWRHQACVYGVEKGILSNYD
                     KILVFSRGAGMQDTNNLTLTTVHDVLSPSLDEIVP"
     misc_feature    374225..375631
                     /gene="pykF"
                     /locus_tag="CTDLC_0332"
                     /note="Pyruvate kinase (PK):  Large allosteric enzyme that
                     regulates glycolysis through binding of the substrate,
                     phosphoenolpyruvate, and one or more allosteric effectors.
                     Like other allosteric enzymes, PK has a high substrate
                     affinity R state and a low...; Region: Pyruvate_Kinase;
                     cd00288"
                     /db_xref="CDD:238178"
     misc_feature    374225..375622
                     /gene="pykF"
                     /locus_tag="CTDLC_0332"
                     /note="pyruvate kinase; Region: pyruv_kin; TIGR01064"
                     /db_xref="CDD:233257"
     misc_feature    order(374225..374230,374396..374398,374402..374404,
                     374426..374437,374684..374689,374705..374707,
                     374714..374728,374771..374773,374795..374797,
                     374816..374818,374852..374854,374960..374962,
                     375014..375019,375029..375031,375125..375127,
                     375131..375133,375218..375220,375224..375229,
                     375392..375394,375398..375400,375404..375406,
                     375437..375439,375446..375451,375455..375457,
                     375461..375469)
                     /gene="pykF"
                     /locus_tag="CTDLC_0332"
                     /note="domain interfaces; other site"
                     /db_xref="CDD:238178"
     misc_feature    order(374312..374314,374318..374320,374414..374416,
                     374789..374791,374870..374872,374876..374878,
                     374948..374950,375044..375046)
                     /gene="pykF"
                     /locus_tag="CTDLC_0332"
                     /note="active site"
                     /db_xref="CDD:238178"
     gene            375696..381056
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /db_xref="GeneID:12387820"
     CDS             375696..381056
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="YP_005812264.1"
                     /db_xref="GI:385244420"
                     /db_xref="GeneID:12387820"
                     /translation="MSSIVRLSGITVRNLKNITVEFCPREIVLFTGVSGSGKSSLAFN
                     TIYAAGRKRYLATLPSFFATKLDSLPDPSVKKIEGLSPTVAVKQNFFEQHIHATVGST
                     TEINSYLALLFSLEGQAYDPVTLHPLTLYSKEKILSEIAAIPDGTQLTLLAPLPARDV
                     LTVRECLRQGFTKVLIDEEVVPIHKFLTTGIPVPGQLIVDTLIKNTSNTPRLKVSLFT
                     TLDIGHGECSLHFDNQKRVFSTQATLPETQQTYAPLSPDLFSSHSHKDRCPQCQGSGI
                     FISIDDPCIIQQTLSIEDNCCPFAGNCSTFLYRTIYQSLADSLGFSLSTPWQNLSPEI
                     QHIFLYGKEGLSIPVKLFDGTLGKKTQTHKQWKGVLNEIGEKIRFSNKPARYLPKGTS
                     YTVCPRCNKTGLSDYANATRWHGKSFADFQQMSLQELFIFLNQLPEKELAIEEVIQGF
                     KSRLTILIDLGLPYLSPERAIDTLSGGERERTALAKHLGAELIGVMYILDEPSIGLHP
                     QDTHKLMNVIRRLRDQGNTVLLVEHDEQMISLADRVIDIGPGAGIFGGEVVFNGSPRE
                     FLAKSDSLTAQYLRQEQHISVPAKRTNSLGTITLSKANKHNLKDLTVSIPLGQMTVVT
                     GVSGSGKSSLINDTLVPCVEEFIEQGFCSTLSIQGALSRLVHINRDLPGRSQRSIPLT
                     YIKAFDEVRQLFAEQPRCKTLGLTKSHFSFNTPLGACAECGGLGSITTTDNRDSITCP
                     SCLGKRFLPQVLEVRYKNKTIADILEMTAYEAKNFFLDEPSIHQKIETLCTLGLQYLP
                     LGRPLYSLSGGEIQRLKLAYELLAPVKHPTLYVLDEPTTGLHTHDVKQLIYVVQSLIH
                     QGHSVIIIEHNMHVVKVADYILELGPEGGNKGGYLIASCSPEELIHKHTPTAIALRPF
                     LSSPQELPYLPDPSPKPPVPAAITIANAHQHNLKHIDLSIPRYALTAVTGPSASGKHS
                     LVFDILHAAGNIAYAELFPPYIRQALIKKTPLPAVDKVTGLSPVIAIEKTSASRNSNH
                     SVASALEISEMLESLFTRIGHPYSPISGDTLRTISPETIAEELLTHYTKGYVTITVPF
                     PKEEEFFSYTQEMLQEGFLKLYANEQFYDLDGPFPTSLENPALVIHHVKILEKNLPSL
                     LASLTLAFSKASSVCLHIEYAGTSLSKTYRQGLQDASGNLFPNIETPSILNHESYLCP
                     LCHGKGFLSTCSILPHKKRFAQHTPISLFTSLFPNQDPSPIYPLLNELGIPSIALFQE
                     IDILSFESLCLGTQQHLGLNALCTKAMLMESEEDFPPDLISKTPCNQCQGLGVYTYKH
                     CTRIHSISLSEIYQSNVAFLKKLLLSVEEEPSLVQDILSRLDLLDRVGLGYVILGQEQ
                     QSLSDGEHYRLLLAKAFSSGLTDVIYLLEDPLAGIHPEDAPCLLAVIKKLVTNHNTVI
                     VTDREGSLAEHADYLLHLGPEPGPNGGYLLSTSALKQSQPVLCNTRSSEETPQLSVSV
                     STSTIQIENLAFPLQRLSTISGVSGSGKTTLLNSIYEHGCAILEKDPSVFSEIIFLDS
                     YPQIASSRSDISTYFDIAPSLRNFYASLTQAKALNISVSMFSPNTKQGQCSDCWGLGY
                     QWIDRAFYAMEKRPCPTCGGFRVQPLIQEVVYEGKHFGQLLQASLNEVAETFSFLKKI
                     QKPLHTLITNDLGYLSLGQNMASLSLSEKIAIKLTKHLFLPPKHPTLFLLDEIATSLD
                     NQQQSALLVQLNTLVSLGHTVVIIENHPAFSQQADFWIQMGRKTDNHILFAGPNPNLS
                     FT"
     misc_feature    375696..381053
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="excinuclease ABC subunit A; Provisional; Region:
                     PRK00635"
                     /db_xref="CDD:234806"
     misc_feature    375708..>376109
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:266551"
     misc_feature    375789..375812
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    order(375798..375803,375807..375815,375957..375959)
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    375948..375959
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    <377040..377381
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:266551"
     misc_feature    377115..377144
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    377181..377198
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    377205..377216
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    377280..377300
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     misc_feature    377487..378386
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:266551"
     misc_feature    377568..377591
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    order(377577..377582,377586..377594,377700..377702,
                     378192..378197,378291..378293)
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    377691..377702
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    378111..378140
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    378180..378197
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    378204..378215
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    378279..378299
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     misc_feature    378504..>378845
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:266551"
     misc_feature    378585..378608
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    order(378594..378599,378603..378611,378756..378758)
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    378747..378758
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    <379764..380096
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:266551"
     misc_feature    379836..379865
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    379902..379919
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    379926..379937
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    380001..380021
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     misc_feature    380190..381029
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:266551"
     misc_feature    380241..380264
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    order(380250..380255,380259..380267,380349..380351,
                     380850..380855,380949..380951)
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    380340..380351
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    380769..380798
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    380838..380855
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    380862..380873
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    380937..380957
                     /gene="uvrA"
                     /locus_tag="CTDLC_0333"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            381274..382674
                     /gene="dnaX_2"
                     /locus_tag="CTDLC_0334"
                     /db_xref="GeneID:12387821"
     CDS             381274..382674
                     /gene="dnaX_2"
                     /locus_tag="CTDLC_0334"
                     /EC_number="2.7.7.7"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="YP_005812265.1"
                     /db_xref="GI:385244421"
                     /db_xref="GeneID:12387821"
                     /translation="MTSYQVSSRRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIF
                     SGIRGTGKTTLARVFAKALNCQNPTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRG
                     IEDIRQINETVLFVPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTE
                     IAKIPNTISSRCQKMLLKRISEETIIDKLATIAKQEGTETSREALLPIAKAAQGSLRD
                     AESLYDYVVGLFPESLDPDSTAKALGILSEDSLYQLAEAITTQNYEQALTPVSDAMQM
                     GVAPAHFLQDVTLLFRSFLLKQYSKQFHSVATKYSSEILLEILDFLGESARHINLALF
                     EKTFLETVIIRLLRIYSRPTFSQLVSQIRQPAPTQIRPIPTASELESCPPQIKSSNTE
                     ETKSSPQPTAVAKLSQGSLLTTASSQTKKETIHQETLPPSLDKISPSESAAIDTLLQF
                     AVVEFSGVLTKEPKHG"
     misc_feature    381274..382662
                     /gene="dnaX_2"
                     /locus_tag="CTDLC_0334"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated; Region: PRK06305"
                     /db_xref="CDD:180523"
     misc_feature    381334..381801
                     /gene="dnaX_2"
                     /locus_tag="CTDLC_0334"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    381409..381432
                     /gene="dnaX_2"
                     /locus_tag="CTDLC_0334"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(381412..381435,381655..381657,381748..381750)
                     /gene="dnaX_2"
                     /locus_tag="CTDLC_0334"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    381643..381660
                     /gene="dnaX_2"
                     /locus_tag="CTDLC_0334"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    381784..381786
                     /gene="dnaX_2"
                     /locus_tag="CTDLC_0334"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     gene            382667..382957
                     /locus_tag="CTDLC_0335"
                     /db_xref="GeneID:12387822"
     CDS             382667..382957
                     /locus_tag="CTDLC_0335"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulatory protein"
                     /protein_id="YP_005812266.1"
                     /db_xref="GI:385244422"
                     /db_xref="GeneID:12387822"
                     /translation="MGSGYAKKKKEAKLMERQFMEMEASLEQKRFSGEAGNGLVSVTI
                     NGKCDLVDVRIKPDCLDPEDPEVVADLFRAAFKAAKAALDSEMSAMQMGMPF"
     misc_feature    382667..382951
                     /locus_tag="CTDLC_0335"
                     /note="Uncharacterized protein conserved in bacteria
                     [Function unknown]; Region: COG0718"
                     /db_xref="CDD:223790"
     gene            complement(382967..384682)
                     /gene="ptsI"
                     /locus_tag="CTDLC_0336"
                     /db_xref="GeneID:12387823"
     CDS             complement(382967..384682)
                     /gene="ptsI"
                     /locus_tag="CTDLC_0336"
                     /EC_number="2.7.3.9"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase"
                     /protein_id="YP_005812267.1"
                     /db_xref="GI:385244423"
                     /db_xref="GeneID:12387823"
                     /translation="MSVTGQDNKELQQEFVIVGEPIVPGIGLGKALLLGKSSLRIREL
                     TLPQEEVEHEISRYYKALKRSRSDLAALEKEAKGKQGYQEIASILQAHLEIIKDPLLT
                     EEVVKTIRKDRKNAEFVFSSVMGEIEKSLCAVQKTTATRVDRVQDIHDISNRVIGHLC
                     CQHKSSLGEFDQNLIVFSEELTPSEAANANPEYIRGFVSLEGAKTSHTAIVSLAKNIP
                     YVANFTTELWDTIKEFSGTLVLINGDKGEITFNPQLSTIQTYYRKQASVSVTVPVQVQ
                     TGKNLPLISLSAQIVSTEELPMIERESPGTSVGLFRSEFMAFSLGRLPCVEEQADQYA
                     QLVQFQCSDIHVLRLFDFGEDKECPCISSSHRSVRWLLEQEKVLKEQLQAIAIVSRIG
                     RLKVLIPGVIDASEIALVKRLFQEEIRLLKGISENILWGSMIEIPSAVWMIEEILQES
                     SFVALGTNDLAQYTLGTSRERSLLGERSRVPHPSVIRMIHHVVEQAKQKNVPVSVCGE
                     MAGDPALLPMFLGLGVKELSAVIPAINSLKMRLLDLNSRECSRLTKQLLRAKTYEEVH
                     QLLYV"
     misc_feature    complement(382976..384634)
                     /gene="ptsI"
                     /locus_tag="CTDLC_0336"
                     /note="phosphoenolpyruvate-protein phosphotransferase;
                     Region: PTS_I_fam; TIGR01417"
                     /db_xref="CDD:213617"
     misc_feature    complement(384284..384634)
                     /gene="ptsI"
                     /locus_tag="CTDLC_0336"
                     /note="PEP-utilizing enzyme, N-terminal; Region:
                     PEP-utilizers_N; pfam05524"
                     /db_xref="CDD:253237"
     misc_feature    complement(383948..384175)
                     /gene="ptsI"
                     /locus_tag="CTDLC_0336"
                     /note="PEP-utilizing enzyme, mobile domain; Region:
                     PEP-utilizers; pfam00391"
                     /db_xref="CDD:249825"
     misc_feature    complement(383048..383899)
                     /gene="ptsI"
                     /locus_tag="CTDLC_0336"
                     /note="PEP-utilizing enzyme, TIM barrel domain; Region:
                     PEP-utilizers_C; pfam02896"
                     /db_xref="CDD:251603"
     gene            complement(384682..385062)
                     /gene="ptsH"
                     /locus_tag="CTDLC_0337"
                     /db_xref="GeneID:12387824"
     CDS             complement(384682..385062)
                     /gene="ptsH"
                     /locus_tag="CTDLC_0337"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein HPr"
                     /protein_id="YP_005812268.1"
                     /db_xref="GI:385244424"
                     /db_xref="GeneID:12387824"
                     /translation="MDLAYHHFVFTRTGKNTMSGGNDSVLHRPVEAPLMEDGELSAVF
                     TIRNSSGIHVRPAGTIVKLFEGEECEATLTYLGKTVNARSVMSILMLGASYNGEVAVH
                     IKGPSASRVMQKLSEVFNSGFGEL"
     misc_feature    complement(384706..384933)
                     /gene="ptsH"
                     /locus_tag="CTDLC_0337"
                     /note="Histidine-containing phosphocarrier protein
                     (HPr)-like proteins. HPr is a central component of the
                     bacterial phosphoenolpyruvate sugar phosphotransferase
                     system (PTS). The PTS catalyses the phosphorylation of
                     sugar substrates during their translocation...; Region:
                     PTS-HPr_like; cd00367"
                     /db_xref="CDD:238217"
     misc_feature    complement(384925..384933)
                     /gene="ptsH"
                     /locus_tag="CTDLC_0337"
                     /note="dimerization domain swap beta strand [polypeptide
                     binding]; other site"
                     /db_xref="CDD:238217"
     misc_feature    complement(order(384793..384798,384805..384816,
                     384868..384870,384877..384879,384889..384894,
                     384898..384903,384907..384909))
                     /gene="ptsH"
                     /locus_tag="CTDLC_0337"
                     /note="regulatory protein interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:238217"
     misc_feature    complement(384904..384906)
                     /gene="ptsH"
                     /locus_tag="CTDLC_0337"
                     /note="active site"
                     /db_xref="CDD:238217"
     misc_feature    complement(384811..384813)
                     /gene="ptsH"
                     /locus_tag="CTDLC_0337"
                     /note="regulatory phosphorylation site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:238217"
     gene            complement(385148..385687)
                     /locus_tag="CTDLC_0338"
                     /db_xref="GeneID:12387825"
     CDS             complement(385148..385687)
                     /locus_tag="CTDLC_0338"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812269.1"
                     /db_xref="GI:385244425"
                     /db_xref="GeneID:12387825"
                     /translation="MSFFSSLSHLDVRITRNSLSAPYDVQMVYSYKGIVYLGAPPFET
                     VGVVFPKLGDETYHHFFSIHNGFSREGEIGIFPYRYLAQAQYLLREDLLSRGKISLED
                     NCSSLGIFPFYAQYDIADSRCFIIDAKIRQYFPSYNMRLDNQSLFPHGKIAISEMLSD
                     SHYHTFLLWLEQYLLSQKP"
     gene            385893..387422
                     /locus_tag="CTDLC_0339"
                     /db_xref="GeneID:12387826"
     CDS             385893..387422
                     /locus_tag="CTDLC_0339"
                     /codon_start=1
                     /transl_table=11
                     /product="COME operon protein 3"
                     /protein_id="YP_005812270.1"
                     /db_xref="GI:385244426"
                     /db_xref="GeneID:12387826"
                     /translation="MLRYLYTTAFLTSLHRLSALRIRLFSSCSVFQKQHPIFIGSAYW
                     LAGMLAHQAPICCALLIVALHPFIPKRCLKTLFSLSICFGVPLLFSPLISPSNTSRSV
                     ANSKIQVAKGSASGYFLIKKKLTHRYSGTALSLETEDKQSYQNLPCSIISTIPLSEHT
                     VYHLEGCVSKSSCPITFRSSKLINTPTQSSIFLRNSSNYSLPILKENFRFFLHQRILN
                     LFSDKDIGRFSSSLILGTPLSYKHKELFKSKGLSHLFSVSGWHFSLFANTFFFLLGTL
                     SPKKRGLWVLFLLSLLNFVFPTSPSVFRTWFSSILFCLAPFSIGHCSSLNRLGISFIF
                     CSLFFPISSPALILSFLATLGILFFFVPLLRFFYSPWESLFGTRWFLFPLRFVFTTLS
                     ISLAAQLFIVFPMIRMFKILPLDGLIYNLFYPTLVMPIFLMIPLSFLNPLLSHLSESY
                     ISWILDLPWLHAPNVLISLTSAPPTLEWITLVSIILVYIGALSSVGKAVNTAVDHSII
                     L"
     misc_feature    385902..387359
                     /locus_tag="CTDLC_0339"
                     /note="Predicted membrane metal-binding protein [General
                     function prediction only]; Region: ComEC; COG0658"
                     /db_xref="CDD:223731"
     misc_feature    386604..387368
                     /locus_tag="CTDLC_0339"
                     /note="Competence protein; Region: Competence; pfam03772"
                     /db_xref="CDD:252155"
     gene            complement(387495..389531)
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /db_xref="GeneID:12387827"
     CDS             complement(387495..389531)
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /EC_number="1.2.4.4"
                     /note="2-oxoisovalerate dehydrogenase subunit alpha"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoisovalerate dehydrogenase beta subunit"
                     /protein_id="YP_005812271.1"
                     /db_xref="GI:385244427"
                     /db_xref="GeneID:12387827"
                     /translation="MRHSVYQLDSAVENVFRLAWTLRFSERKMLLLSRQSGSGGSFQL
                     SCAGHELAGVVAAKSLIPGKDWAFPYYRDQGFPLGLGCDLSEIFASFLARTTQNHSAG
                     RMMPYHYSHKKLRICCQSSVVGTQFLQAAGRAWGVKNSGKSEVVYVSGGDGSTSQGEF
                     HEMLNFASLHQLPLVIAIQNNQWAISVPFADQCGADLVALGNSYSGLATYEVDGGDVS
                     ALTQTFERAVSDARHRHIPALVIVNVVRLESHSNSDNQAKYRSEEDLSCCQAQDPLVR
                     LEKSLLDDFGVAHEVIEQIKAELQETVNQACELAESAPFPCKGATKHEVFAPYNISLI
                     DYENALETASLQKLEPRVMRDAITEALVEEMQRDPGVVVFGEDVAGNKGGVFGVTRTL
                     TEQFGENRCFNTPLAEATIIGAAVGMAFDGFYKPVAEIQFADYIWPGINQLFSEAASI
                     YYRSAGEWEMPIVIRTPCGGYIQGGPYHSQNIEAFLAHCPGLKVVYPSNAADAKALLK
                     AAIRDPNPVVFLEHKALYQRRLFSTTPVFSSDYVLPFGQARIVHPGTDLTIVSWGMSL
                     VMSVEVARDLLELGISVEVIDLRTIVPCDFATVCESVKKTGKLLVVHEASEFCGFGSE
                     LVALVAERAYRYLDAPIKRIGALHAPVPYSKVLENEVLPQKEKIFQEAKLLAEF"
     misc_feature    complement(388602..389486)
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /note="Thiamine pyrophosphate (TPP) family, E1 of
                     PDC_ADC_BCADC subfamily, TPP-binding module; composed of
                     proteins similar to the E1 components of the human
                     pyruvate dehydrogenase complex (PDC), the acetoin
                     dehydrogenase complex (ADC) and the branched chain...;
                     Region: TPP_E1_PDC_ADC_BCADC; cd02000"
                     /db_xref="CDD:238958"
     misc_feature    complement(order(388758..388760,388770..388772,
                     388914..388916,388932..388934,388971..388982,
                     389025..389027,389037..389039,389049..389051,
                     389058..389069,389073..389075,389166..389171,
                     389253..389255,389412..389414))
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /note="tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238958"
     misc_feature    complement(order(388782..388784,388983..388985,
                     388989..388991,389070..389081,389163..389165,
                     389169..389171,389316..389321))
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /note="TPP-binding site [chemical binding]; other site"
                     /db_xref="CDD:238958"
     misc_feature    complement(order(389025..389027,389034..389039,
                     389055..389060,389115..389117,389124..389129,
                     389133..389138,389145..389150,389157..389159,
                     389172..389174,389178..389180,389184..389186))
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238958"
     misc_feature    complement(order(388713..388721,388743..388775,
                     388779..388799))
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /note="phosphorylation loop region [posttranslational
                     modification]"
                     /db_xref="CDD:238958"
     misc_feature    complement(387498..388475)
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /note="Pyruvate/2-oxoglutarate dehydrogenase complex,
                     dehydrogenase (E1) component, eukaryotic type, beta
                     subunit [Energy production and conversion]; Region: AcoB;
                     COG0022"
                     /db_xref="CDD:223101"
     misc_feature    complement(387963..388469)
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /note="Pyrimidine (PYR) binding domain of the beta
                     subunits of the E1 components of human pyruvate
                     dehydrogenase complex (E1- PDHc) and related proteins;
                     Region: TPP_PYR_E1-PDHc-beta_like; cd07036"
                     /db_xref="CDD:132919"
     misc_feature    complement(order(387987..387992,388053..388058,
                     388101..388103,388110..388112,388176..388181,
                     388206..388211,388218..388220,388278..388286,
                     388290..388295,388302..388319,388323..388325,
                     388332..388334,388401..388403,388419..388421,
                     388425..388427))
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /note="alpha subunit interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:132919"
     misc_feature    complement(order(388218..388220,388227..388229,
                     388308..388310,388314..388316,388404..388406))
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /note="TPP binding site [chemical binding]; other site"
                     /db_xref="CDD:132919"
     misc_feature    complement(order(388062..388064,388068..388073,
                     388077..388079,388101..388106,388110..388112,
                     388176..388178,388185..388187,388197..388199,
                     388212..388214,388218..388223,388308..388319,
                     388323..388325,388401..388403))
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /note="heterodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:132919"
     misc_feature    complement(387528..387896)
                     /gene="pdhA/B"
                     /locus_tag="CTDLC_0340"
                     /note="Transketolase, C-terminal domain; Region:
                     Transketolase_C; pfam02780"
                     /db_xref="CDD:251527"
     gene            complement(389566..390744)
                     /gene="dnaJ"
                     /locus_tag="CTDLC_0341"
                     /db_xref="GeneID:12387828"
     CDS             complement(389566..390744)
                     /gene="dnaJ"
                     /locus_tag="CTDLC_0341"
                     /note="DnaJ protein"
                     /codon_start=1
                     /transl_table=11
                     /product="Chaperone protein"
                     /protein_id="YP_005812272.1"
                     /db_xref="GI:385244428"
                     /db_xref="GeneID:12387828"
                     /translation="MDYYTILGVAKTATPEEIKKAYRKLAVKYHPDKNPGDAEAERRF
                     KEVSEAYEVLGDAQKRESYDRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGDFG
                     GNGGGFFEGLFGGLGEAFGMRGGSESSRQGASKKVHITLSFEEAAKGVEKELLVSGYK
                     SCDACSGSGANTAKGVKVCDRCKGSGQVVQSRGFFSMASTCPDCSGEGRVITDPCSVC
                     RGQGRIKDKRSVHVNIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFER
                     HGDDLVLELPIGFVDAALGIKKEIPTLLKEGTCRLSIPEGIQSGTVLKVRGQGFPNVH
                     GKSRGDLLVRVSVETPQHLSNEQKDLLRQFAATEKAENFPKKRSFLDKIKGFFSDFAV
                     "
     misc_feature    complement(389569..390744)
                     /gene="dnaJ"
                     /locus_tag="CTDLC_0341"
                     /note="chaperone protein DnaJ; Provisional; Region:
                     PRK14284"
                     /db_xref="CDD:237658"
     misc_feature    complement(390577..390741)
                     /gene="dnaJ"
                     /locus_tag="CTDLC_0341"
                     /note="DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; Region: DnaJ;
                     cd06257"
                     /db_xref="CDD:99751"
     misc_feature    complement(order(390598..390603,390610..390615,
                     390622..390624,390649..390657))
                     /gene="dnaJ"
                     /locus_tag="CTDLC_0341"
                     /note="HSP70 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99751"
     misc_feature    complement(390079..390261)
                     /gene="dnaJ"
                     /locus_tag="CTDLC_0341"
                     /note="Zinc finger domain of DnaJ and HSP40; Region:
                     DnaJ_zf; cd10719"
                     /db_xref="CDD:199908"
     misc_feature    complement(order(390091..390093,390100..390102,
                     390133..390135,390142..390144,390199..390201,
                     390208..390210,390250..390252,390259..390261))
                     /gene="dnaJ"
                     /locus_tag="CTDLC_0341"
                     /note="Zn binding sites [ion binding]; other site"
                     /db_xref="CDD:199908"
     misc_feature    complement(389686..390078)
                     /gene="dnaJ"
                     /locus_tag="CTDLC_0341"
                     /note="C-terminal substrate binding domain of DnaJ and
                     HSP40; Region: DnaJ_C; cd10747"
                     /db_xref="CDD:199909"
     misc_feature    complement(order(389686..389700,389788..389799,
                     389863..389868,389875..389880))
                     /gene="dnaJ"
                     /locus_tag="CTDLC_0341"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:199909"
     gene            complement(390773..391009)
                     /gene="rpsU"
                     /locus_tag="CTDLC_0342"
                     /db_xref="GeneID:12387829"
     CDS             complement(390773..391009)
                     /gene="rpsU"
                     /locus_tag="CTDLC_0342"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="YP_005812273.1"
                     /db_xref="GI:385244429"
                     /db_xref="GeneID:12387829"
                     /translation="MCVRARRALLNKTNYVLRLFMPSVKVRVGEPIDRALRILKKKID
                     KEGILKTSKSHRFYDKPSVKKRAKSKAAAKYRGR"
     misc_feature    complement(<390821..390949)
                     /gene="rpsU"
                     /locus_tag="CTDLC_0342"
                     /note="30S ribosomal protein S21; Reviewed; Region: rpsU;
                     PRK00270"
                     /db_xref="CDD:234707"
     gene            complement(391146..391778)
                     /locus_tag="CTDLC_0343"
                     /db_xref="GeneID:12387830"
     CDS             complement(391146..391778)
                     /locus_tag="CTDLC_0343"
                     /EC_number="3.4.24.57"
                     /codon_start=1
                     /transl_table=11
                     /product="O-sialoglycoprotein endopeptidase"
                     /protein_id="YP_005812274.1"
                     /db_xref="GI:385244430"
                     /db_xref="GeneID:12387830"
                     /translation="MYKYFIVDTSGSQPFLAYVDCRDVLEVWSLPTGPDQGVVLNFIF
                     NSLDLPFQGIGVSVGPGGFSATRVGVAFAQGLSLAKNVPLVGYSSLEGYLSLGQEEEA
                     LLLPLGKKGGIVALNSELSLDGFLLTDTTSTPGILLSYSEALEYCLDKGCCHVISPDP
                     TYFVELFSSRISVRKVVPCIDRIRKYVVSQFVLSQNLPLCLDYRSISSFF"
     misc_feature    complement(391161..391775)
                     /locus_tag="CTDLC_0343"
                     /note="Inactive homolog of metal-dependent proteases,
                     putative molecular chaperone [Posttranslational
                     modification, protein turnover, chaperones]; Region:
                     COG1214"
                     /db_xref="CDD:224135"
     misc_feature    complement(<391458..391667)
                     /locus_tag="CTDLC_0343"
                     /note="Glycoprotease family; Region: Peptidase_M22;
                     pfam00814"
                     /db_xref="CDD:250152"
     gene            392088..394547
                     /gene="lon"
                     /locus_tag="CTDLC_0344"
                     /db_xref="GeneID:12387831"
     CDS             392088..394547
                     /gene="lon"
                     /locus_tag="CTDLC_0344"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812275.1"
                     /db_xref="GI:385244431"
                     /db_xref="GeneID:12387831"
                     /translation="MNSTNNTDSQNLDPNASEVEKLLDESAEAEEKVDDHTPPSELFI
                     LPLNKRPFFPGMAAPLLIEAGPHYEVLTLLAKSSQKHIGLVLTKKEDANTLKVGFNQL
                     HRVGVSARILRIMPIEGGSAQVLLSIEDRIRIVKPIQDKYLKAKVSYHKENKELTEEL
                     KAYSISIVSIIKDLLKLNPLFKEELQIFLGHSDFTEPGKLADFSVALTTATREELQEI
                     LETTDMHDRIDKALVLLKKELDLSRLQSSINQKIEATITKSQKEFFLKEQLKTIKKEL
                     GLEKDDHAVDLEKFMERFNKRDVPQYAMDVIQDEMDKLQTLETSSAEYAVCRNYLDWL
                     TIVPWGIQTKEYHDLKKAESILNKDHYGLEDIKQRILELISVGKLANGMKGSIICLVG
                     PPGVGKTSIGRSIAKVLHRKFFRFSVGGMRDEAEIKGHRRTYIGAMPGKLVQALKQSQ
                     IMNPVIMIDEVDKIGSSYHGDPASALLEVLDPEQNKDFLDHYLDVRVDLSNVLFILTA
                     NVLDSIPDPLLDRMEVLRLSGYILEEKLQIATKYLVPRARKEMGLSAQNVTFQPEALK
                     HMINNYAREAGVRTLNENIKKVLRKVALKIVQNQEKNLSKKSRFTITPKNLQDYLGKP
                     VFSSDRFYEKTPVGVATGLAWTSLGGATLYIESVQVPSSSGKADMHLTGQAGDVMKES
                     SQIAWTYLHSALERYAPGQPFFEKSQVHIHIPEGATPKDGPSAGITMVTSLLSLLLDV
                     PVLNNLGMTGELTLTGRVLGIGGIREKLIAARRSKLNILIFPEDNRRDYDELPAYLKK
                     GLKVHFVTHYDDVFKIAFPGV"
     misc_feature    392196..394541
                     /gene="lon"
                     /locus_tag="CTDLC_0344"
                     /note="ATP-dependent Lon protease, bacterial type
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: Lon; COG0466"
                     /db_xref="CDD:223542"
     misc_feature    392208..392798
                     /gene="lon"
                     /locus_tag="CTDLC_0344"
                     /note="ATP-dependent protease La (LON) domain; Region:
                     LON; pfam02190"
                     /db_xref="CDD:251146"
     misc_feature    393168..393656
                     /gene="lon"
                     /locus_tag="CTDLC_0344"
                     /note="The AAA+ (ATPases Associated with a wide variety of
                     cellular Activities) superfamily represents an ancient
                     group of ATPases belonging to the ASCE (for additional
                     strand, catalytic E) division of the P-loop NTPase fold.
                     The ASCE division also includes ABC; Region: AAA; cd00009"
                     /db_xref="CDD:99707"
     misc_feature    393261..393284
                     /gene="lon"
                     /locus_tag="CTDLC_0344"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(393264..393287,393462..393464,393612..393614)
                     /gene="lon"
                     /locus_tag="CTDLC_0344"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    393450..393467
                     /gene="lon"
                     /locus_tag="CTDLC_0344"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    393648..393650
                     /gene="lon"
                     /locus_tag="CTDLC_0344"
                     /note="arginine finger; other site"
                     /db_xref="CDD:99707"
     misc_feature    393918..394541
                     /gene="lon"
                     /locus_tag="CTDLC_0344"
                     /note="Lon protease (S16) C-terminal proteolytic domain;
                     Region: Lon_C; pfam05362"
                     /db_xref="CDD:191262"
     gene            394649..395014
                     /locus_tag="CTDLC_0345"
                     /db_xref="GeneID:12387832"
     CDS             394649..395014
                     /locus_tag="CTDLC_0345"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812276.1"
                     /db_xref="GI:385244432"
                     /db_xref="GeneID:12387832"
                     /translation="MQLPSIIQSFFFPKAPPSPLKKPIYQQTERIINIAYLVLLSLSV
                     VGIISGVFLSLSFPLLGAGICLISLAVGSCLLVLFPLLPDIEKIIARREPKVSITTSS
                     PLPTLMRYFKSIGLGKAAH"
     gene            395364..396278
                     /gene="elaC"
                     /locus_tag="CTDLC_0346"
                     /db_xref="GeneID:12387833"
     CDS             395364..396278
                     /gene="elaC"
                     /locus_tag="CTDLC_0346"
                     /EC_number="3.1.26.11"
                     /codon_start=1
                     /transl_table=11
                     /product="Ribonuclease Z"
                     /protein_id="YP_005812277.1"
                     /db_xref="GI:385244433"
                     /db_xref="GeneID:12387833"
                     /translation="MSYRGLTILGCSSQQPTRHRNHGAYLLRWNGEGLLFDPGEGTQR
                     QFIYANIAPTVVSRIFISHFHGDHCLGLGSMLMRLNLDRVLHPIHCYYPASGKKYFDR
                     LRYSTIYHETIKVIEHPIDREGIVEDFGNFRIESRQLDHLVDTLGWRITEPDTTKFIP
                     EKIKAAGLKGPIMQELINKGQVKVNDTIVHLDDVSYTRKGDSIAVVADSLPCQAIVDL
                     ARNARILLCESTYLEEHSHLAKSHYHMTAKQAAEQAKRAEVQQLILTHFSARYNTTEE
                     FVQEAGEIFPNVFAAEEFCSYEFPKNPS"
     misc_feature    395379..396260
                     /gene="elaC"
                     /locus_tag="CTDLC_0346"
                     /note="ribonuclease Z; Region: RNase_Z; TIGR02651"
                     /db_xref="CDD:233963"
     gene            396334..397287
                     /gene="xerC"
                     /locus_tag="CTDLC_0347"
                     /db_xref="GeneID:12387834"
     CDS             396334..397287
                     /gene="xerC"
                     /locus_tag="CTDLC_0347"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812278.1"
                     /db_xref="GI:385244434"
                     /db_xref="GeneID:12387834"
                     /translation="MGMITSFYAFLDYLKNMKASSLHTLRNYCMDLSSLKCFLEKKSD
                     LSPTPPLSLHDNTYDYPPLSFSLFTKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFAR
                     FCVKNQLIPENPAEMIRGPRLPQELPSPLTYEQVLALMAAPELDKVTGFRDRCLLELF
                     YSSGLRISEITALNRADIDFQSHLLHIRGKGKKERIVPMTKVAVQWLQDYLNHPDRAS
                     VEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGSITPHTIRHTIATHWLERGMD
                     LKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHPHNLEE"
     misc_feature    396334..397272
                     /gene="xerC"
                     /locus_tag="CTDLC_0347"
                     /note="site-specific tyrosine recombinase XerC; Reviewed;
                     Region: xerC; PRK00236"
                     /db_xref="CDD:234698"
     misc_feature    396352..397254
                     /gene="xerC"
                     /locus_tag="CTDLC_0347"
                     /note="DNA breaking-rejoining enzymes, C-terminal
                     catalytic domain. The DNA breaking-rejoining enzyme
                     superfamily includes type IB topoisomerases and tyrosine
                     recombinases that share the same fold in their catalytic
                     domain containing six conserved active site...; Region:
                     DNA_BRE_C; cl00213"
                     /db_xref="CDD:260266"
     misc_feature    order(396829..396834,396901..396903,397105..397113,
                     397216..397218)
                     /gene="xerC"
                     /locus_tag="CTDLC_0347"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238231"
     misc_feature    order(396829..396831,396901..396903,397111..397113,
                     397120..397122,397189..397191,397216..397218)
                     /gene="xerC"
                     /locus_tag="CTDLC_0347"
                     /note="Int/Topo IB signature motif; other site"
                     /db_xref="CDD:238231"
     misc_feature    order(396829..396831,397111..397113,397120..397122,
                     397189..397191,397216..397218)
                     /gene="xerC"
                     /locus_tag="CTDLC_0347"
                     /note="active site"
                     /db_xref="CDD:238231"
     gene            397305..398927
                     /gene="yjjK"
                     /locus_tag="CTDLC_0348"
                     /db_xref="GeneID:12387835"
     CDS             397305..398927
                     /gene="yjjK"
                     /locus_tag="CTDLC_0348"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="YP_005812279.1"
                     /db_xref="GI:385244435"
                     /db_xref="GeneID:12387835"
                     /translation="MYSKKVFVILLSMSIVLDKIGKTLGTRVLFDDVSVVFNPGNRYG
                     LTGPNGAGKSTLLKIITGLVEPSRGTISLPKKIGILRQNIDSFGDVIVLDCVIMGNSR
                     LWEAMQRRDALYAEEFTDAIGMELGEIEEIIGEEDGYRAESEAEELLLGIGIPEEFFS
                     QKMATIPLDLQFRVLLCQALFGHPEALLLDEPTNHLDLHSINWLGSFLKDYNGTVIVV
                     SHDRHFLNTITTHIADIDYDTIIIYPGNYDAMVEMKTASREQEKADIKSKEKKIAQLR
                     EFVAKFGAGSRASQVQSRLREIKKLQPQELKKSNIQRPYIRFPVSDKASGKVVFSIEG
                     ISKTYDADPLFKPFSLEIYQGDKIGVIGNNGLGKTTLMKLLAGVEQPSQGQVKLGHNV
                     AFSYFPQNHADILKDCGEETLFEWLRRRKTGITDQEVRSVLGKMLFGGDDAFKQVKAL
                     SGGETARLLMAGMMLENHNMLILDEANNHLDLESVSALAWAINDYPGTAIFVSHDRTL
                     IDECATKLLIFNKGTISFFGGPMSEYLASQKK"
     misc_feature    397338..398921
                     /gene="yjjK"
                     /locus_tag="CTDLC_0348"
                     /note="ATPase components of ABC transporters with
                     duplicated ATPase domains [General function prediction
                     only]; Region: Uup; COG0488"
                     /db_xref="CDD:223562"
     misc_feature    397347..398021
                     /gene="yjjK"
                     /locus_tag="CTDLC_0348"
                     /note="ATP-binding cassette domain of elongation factor 3,
                     subfamily F; Region: ABCF_EF-3; cd03221"
                     /db_xref="CDD:213188"
     misc_feature    398001..398258
                     /gene="yjjK"
                     /locus_tag="CTDLC_0348"
                     /note="ABC transporter; Region: ABC_tran_2; pfam12848"
                     /db_xref="CDD:257346"
     misc_feature    398295..398873
                     /gene="yjjK"
                     /locus_tag="CTDLC_0348"
                     /note="ATP-binding cassette domain of elongation factor 3,
                     subfamily F; Region: ABCF_EF-3; cd03221"
                     /db_xref="CDD:213188"
     gene            398963..399553
                     /gene="maf"
                     /locus_tag="CTDLC_0349"
                     /db_xref="GeneID:12387836"
     CDS             398963..399553
                     /gene="maf"
                     /locus_tag="CTDLC_0349"
                     /codon_start=1
                     /transl_table=11
                     /product="Septum formation protein Maf"
                     /protein_id="YP_005812280.1"
                     /db_xref="GI:385244436"
                     /db_xref="GeneID:12387836"
                     /translation="MEARLVLGSSSERRKAVLESFRIPFICVSPDFDERSIVYSGDPF
                     EYTKELAWNKANVVRSQGFSDALIITADTVVVYKGEVFNKPESEEHAVEMLRTLSGSS
                     HSVITTLVLMQNEKVLSASENTQVSFIDIPPQHLKTYVRSFSSLKRCGGYCVQDGGGL
                     IIKQIEGCVYNIQGLPIKTLNQLLMEFNISLWDYLV"
     misc_feature    398975..399514
                     /gene="maf"
                     /locus_tag="CTDLC_0349"
                     /note="Nucleotide binding protein Maf. Maf has been
                     implicated in inhibition of septum formation in
                     eukaryotes, bacteria and archaea, but homologs in
                     B.subtilis and S.cerevisiae are nonessential for cell
                     division. Maf has been predicted to be a nucleotide-
                     or...; Region: Maf; cd00555"
                     /db_xref="CDD:238310"
     misc_feature    order(398987..398989,399002..399004,399062..399064,
                     399122..399124,399176..399178,399212..399214)
                     /gene="maf"
                     /locus_tag="CTDLC_0349"
                     /note="active site"
                     /db_xref="CDD:238310"
     misc_feature    order(399104..399106,399308..399325)
                     /gene="maf"
                     /locus_tag="CTDLC_0349"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238310"
     gene            399535..401235
                     /locus_tag="CTDLC_0350"
                     /db_xref="GeneID:12387837"
     CDS             399535..401235
                     /locus_tag="CTDLC_0350"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812281.1"
                     /db_xref="GI:385244437"
                     /db_xref="GeneID:12387837"
                     /translation="MGLSRLAFISFLSFTLSASCDFPSSVSQRILFSCRKSVPQALEA
                     YLEASATYQQHDFSVLRVIAESYLQQSFLSEDTYIRKSAIIGAGLSGSSEALELLSEA
                     IETQDLYEQLLILNAATSQLSKTSDKLLFKGLTASHPVIRLEAAYRLACMKNSKVSDY
                     LYSFIYKLPEEIQNLAATIFLQLETEEADAYIHHLLSSPNNLTRNYVAYLIGEYKQKR
                     FLPTLRSLLTSASPLDQEGALYALGKLEDSGSYPRIKALSSRSNPEVVLAAAQTLLFL
                     EKEEEALPILTNLCQQKLLRALYTARFLSQEKGEELLLPIFYNATQEEIRLNTALALV
                     HQGCTDPQVLHYLTEILESKVLHRIFLPTHSTGKAIQFWKECTTFPLMSQEDKMRTLA
                     MYRVAEDTILSALLKLPNDAYLPYLERILASQKTILAAKAIAFLSVTAHPQALSLVSK
                     AALTPGDPIIRAYANLALYTMTKDPEKKAVLYRYAEQLIEDTILFTDAENPLPSPSSS
                     YLRYQVSPETRTQLMLAILETLVSSKTDEDIRVFLSLMKKTHYKNIPILSGLLMRIVE
                     "
     misc_feature    399970..400965
                     /locus_tag="CTDLC_0350"
                     /note="FOG: HEAT repeat [Energy production and
                     conversion]; Region: COG1413"
                     /db_xref="CDD:224331"
     gene            401242..403335
                     /locus_tag="CTDLC_0351"
                     /db_xref="GeneID:12387838"
     CDS             401242..403335
                     /locus_tag="CTDLC_0351"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812282.1"
                     /db_xref="GI:385244438"
                     /db_xref="GeneID:12387838"
                     /translation="MKRFFPLFIGVLLAHTLPSEGLSHQQAVQKKISYLSHFKGITGI
                     MDVEDGVLHIHDDLRLQANKAYVENRTDCGIKIVAHGNVMVNYRGKILICDYLEYYED
                     TDSCLLTNGRCSLYPWFIGGSTITISPSSIIIHKGYISTSEGPQKHICLSGDYLKYSS
                     DSVLSMGPSRLSICNTPVLLLPQISIMPMEIPKPPITFRGGSGGFLGSYLGVSYSPIS
                     KKHCSTTLFLDGFFKHGIGLGYNMRFSSQENPSNAINIKSYYAHRLAIDSSGAKDRYR
                     LHGDFTFSKERAHLAGEFHLSDSWETVVDIFPNNFSLKNTGPTEVSLSWRDNNLFGKM
                     TSSVKVNSFQNVKQELPQAILHHRPVRIRRSRIFLENRLEAGFLDFHFSSNIPGSNFS
                     SWRFSSAHKVYRGLVLPIGTLTPSLSGTAIYYTRMLSPNAAHCQLSGSLSFDYRVALQ
                     KEYRHARHIVEPFCSFLKTTRPVLSSDEPHIFSIKDAFHSINLLHVGLESKVLNKHST
                     PSHLKLWTTYIFDEPHAKDTFPKTACWFSLPLTLQNTLSLDAEWIWKKSRWDHLNVIW
                     EWILNDNLGLTLEFLHRSKYGFIKCAKDNYTLDVSRSLDTLLASPLSDRRNLITGKLF
                     VRPHPHWNYNLNLRYGWHRPDSPSYLEYQMILGHKIFEHWQLFSVYEKREADKRCFFY
                     LKLDKRKQKHRHPFG"
     gene            complement(403409..403717)
                     /gene="secG"
                     /locus_tag="CTDLC_035101"
                     /db_xref="GeneID:12387839"
     CDS             complement(403409..403717)
                     /gene="secG"
                     /locus_tag="CTDLC_035101"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812283.1"
                     /db_xref="GI:385244439"
                     /db_xref="GeneID:12387839"
                     /translation="MVALFYIFLFLFLLLCLILCGLVLVQESKSTGLGSSFGVDSGDS
                     VFGVSTPEILKKVTAWLAGAFCLGCLILSFATSYLGKGENREPLPQQYVEDLIQDVEE
                     "
     misc_feature    complement(403466..>403654)
                     /gene="secG"
                     /locus_tag="CTDLC_035101"
                     /note="Preprotein translocase subunit SecG [Intracellular
                     trafficking and secretion]; Region: SecG; COG1314"
                     /db_xref="CDD:224233"
     gene            complement(403873..404448)
                     /gene="def"
                     /locus_tag="CTDLC_0353"
                     /db_xref="GeneID:12387840"
     CDS             complement(403873..404448)
                     /gene="def"
                     /locus_tag="CTDLC_0353"
                     /EC_number="3.5.1.88"
                     /codon_start=1
                     /transl_table=11
                     /product="Peptide deformylase"
                     /protein_id="YP_005812284.1"
                     /db_xref="GI:385244440"
                     /db_xref="GeneID:12387840"
                     /translation="MRLCIGICGIMIRDLEYYDSPILRKVAAPVTEITDELRQLVLDM
                     SETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQL
                     VYGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLHGVL
                     YIDRMSDKDKTKQFKNNLEKIRRKYSILRGL"
     misc_feature    complement(403966..404400)
                     /gene="def"
                     /locus_tag="CTDLC_0353"
                     /note="Polypeptide or peptide deformylase; a family of
                     metalloenzymes that catalyzes the removal of the
                     N-terminal formyl group in a growing polypeptide chain
                     following translation initiation during protein synthesis
                     in prokaryotes. These enzymes utilize Fe(II)...; Region:
                     Pep_deformylase; cd00487"
                     /db_xref="CDD:238271"
     misc_feature    complement(order(403984..403986,403993..403998,
                     404119..404127,404269..404271,404284..404292))
                     /gene="def"
                     /locus_tag="CTDLC_0353"
                     /note="active site"
                     /db_xref="CDD:238271"
     misc_feature    complement(order(403993..403995,404119..404121,
                     404269..404271,404284..404286))
                     /gene="def"
                     /locus_tag="CTDLC_0353"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:238271"
     misc_feature    complement(order(403984..403986,403996..403998,
                     404122..404124))
                     /gene="def"
                     /locus_tag="CTDLC_0353"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:238271"
     gene            complement(404693..405526)
                     /gene="ksgA"
                     /locus_tag="CTDLC_0354"
                     /db_xref="GeneID:12387841"
     CDS             complement(404693..405526)
                     /gene="ksgA"
                     /locus_tag="CTDLC_0354"
                     /EC_number="2.1.1.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Dimethyladenosine transferase"
                     /protein_id="YP_005812285.1"
                     /db_xref="GI:385244441"
                     /db_xref="GeneID:12387841"
                     /translation="MARSSIEQLTSFLRSVNGRAKKALSQNFLVDGNILRKILTTAEV
                     QPGDWVLEIGPGFGALSEVLLSQGANVIALEKDPMFEESLSQLPMDIEITDACKYPLT
                     SLEDKGWKGKGRIVANLPYHITTPLLTKFFLECPYRWKTVTVMIQDEVARRITAKPGD
                     KDYGSLTVFLSFFADVQYAFKVSPNCFYPKPSVHSAVVHMRVHEQFALADSEIEEFFT
                     LTRAAFGQRRKLLANSLKNLYPKDKVFQVLEQLGFSEKTRPETIFLEEYLKIFHLLKD
                     I"
     misc_feature    complement(405122..405379)
                     /gene="ksgA"
                     /locus_tag="CTDLC_0354"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    complement(order(405173..405175,405239..405247,
                     405299..405304,405350..405370))
                     /gene="ksgA"
                     /locus_tag="CTDLC_0354"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            complement(405542..406603)
                     /locus_tag="CTDLC_0355"
                     /db_xref="GeneID:12387842"
     CDS             complement(405542..406603)
                     /locus_tag="CTDLC_0355"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812286.1"
                     /db_xref="GI:385244442"
                     /db_xref="GeneID:12387842"
                     /translation="MRVVERAVIACYLGITIFSGIAFGYEGAFSSGSFEQNPSGVAIH
                     NRVLFKVDEDTVVTTLDVIRKLNILFYSTCPQLVDSVSARSQYYSAMWPVVLETVINE
                     FLMAADAKAKKIFIDPTSVNQEIEAMFGRDLSPFAKFFDMTPEDVFNVVHRILVAQRV
                     EGMMVRSRVMLKVTPGMVREYYQKLADEAAQITQWTYRVLTIKAGLEFLAHKIAGKVQ
                     ERLNEGSSWDKERLTALVLSQGGQLMCSEEFFREDAQLSVAHRQSLEEINFPEERCGK
                     VLEHASGLKLFVLFNRATKTLDPLDKMEAQLKQQLMMEFAAEEEANYKNKLHARYGFD
                     PATITKLLAEDAPQLFSLL"
     gene            complement(406908..409070)
                     /gene="yyaL"
                     /locus_tag="CTDLC_0356"
                     /db_xref="GeneID:12387843"
     CDS             complement(406908..409070)
                     /gene="yyaL"
                     /locus_tag="CTDLC_0356"
                     /EC_number="2.7.4.9"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate kinase"
                     /protein_id="YP_005812287.1"
                     /db_xref="GI:385244443"
                     /db_xref="GeneID:12387843"
                     /translation="MILKLKVYLLFFLFFIMTTDQPFTNKLITEKSPYLLLYAHTPVD
                     WYPWSAEAFQKASAEDKPIFLSIGCTHSKWCQVMLKENYENPEVAAILNEYFVCIKVD
                     KEELPHLANLYFELSQMLSVSGEVQDSPTWPLNVFLTPNLLPFFSLGYASFAGKMGAS
                     SFVQMLEKLHIMWEDREDREVFVQQAERVLEVAAFLEGCSCKKECLEEECLKRVTEAI
                     YRDVDAQFGGVKSFPKILPGLLSLFLLRVGAEYQDSRAIFFVNRSLQSVANGGIFDHL
                     AGGFFRYTIDDRWLIPCFEKRAFDNALMMLVYTEAGVYMRNPEFVIVAKRVLNYLIKE
                     LTDPKSGSFYLSEYGQQWAGTDIDSQYTWSGEEIRSLLGEQAEMFCEYYDVSREGICN
                     GRNILHVSPYMNRKEIEERYHCSLEEFQKKLEASREKLRVYREGKTQASKDDQSFTFQ
                     NGWGIFSLIKTGILLGEPECFVVAERCGEFIANNLYKNGRLLRRWRQGESKYSAGLED
                     YAAMIMGALALFEIGSGAKWLVLAEELAKEVLVSFRADTGGFYSTDGRDSSLLIKKAC
                     FVDGDAISSNALLCQGLLKLHIISGKRHYLTFAEDILQCVQGKWAKHKFSSLGSLLAA
                     QEYFSKQHRKIFISLGNEGDRAQVLDCFKGIFLPHTSLVWLTAKDREILSAYLPEGEK
                     RLIPSKEGLPTKIYLLDKDCGRVFTSLEHFYEFMSQLS"
     misc_feature    complement(406911..409019)
                     /gene="yyaL"
                     /locus_tag="CTDLC_0356"
                     /note="Highly conserved protein containing a thioredoxin
                     domain [Posttranslational modification, protein turnover,
                     chaperones]; Region: COG1331"
                     /db_xref="CDD:224250"
     misc_feature    complement(408498..409001)
                     /gene="yyaL"
                     /locus_tag="CTDLC_0356"
                     /note="Protein of unknown function, DUF255; Region:
                     Thioredox_DsbH; pfam03190"
                     /db_xref="CDD:251787"
     gene            409237..409323
                     /locus_tag="CTDLC_r004"
                     /db_xref="GeneID:12387844"
     tRNA            409237..409323
                     /locus_tag="CTDLC_r004"
                     /product="tRNA-Ser"
                     /db_xref="GeneID:12387844"
     gene            complement(409340..409594)
                     /locus_tag="CTDLC_1357"
                     /db_xref="GeneID:12387845"
     CDS             complement(409340..409594)
                     /locus_tag="CTDLC_1357"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812288.1"
                     /db_xref="GI:385244444"
                     /db_xref="GeneID:12387845"
                     /translation="MEILIQEAPDRWFGIFESEVVEGETGAYSKTEGFCTTGICFYYQ
                     TKKFVNSLGREGLEEVSSSKPLHFTKKAYLPRLIKVKGYR"
     gene            409837..410373
                     /locus_tag="CTDLC_0358"
                     /db_xref="GeneID:12387846"
     CDS             409837..410373
                     /locus_tag="CTDLC_0358"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812289.1"
                     /db_xref="GI:385244445"
                     /db_xref="GeneID:12387846"
                     /translation="MATPITVPPSSASSQSSPDVSPHLSSASAKNAIYNTKQGRPWPV
                     IVSQIALLIMRISSIIVLGLGIAFLASNPMLGWSLLIAAITLAISSLLCAIAISVYQT
                     LTIRKLQSEVSSLERQSGVIFIEEGVEDALLSFESPFAGLEDDLVSPISPPLSPGDRS
                     YIDHLVMQAEARSLEEHC"
     gene            complement(410433..411023)
                     /locus_tag="CTDLC_0359"
                     /db_xref="GeneID:12387847"
     CDS             complement(410433..411023)
                     /locus_tag="CTDLC_0359"
                     /codon_start=1
                     /transl_table=11
                     /product="Bioy"
                     /protein_id="YP_005812290.1"
                     /db_xref="GI:385244446"
                     /db_xref="GeneID:12387847"
                     /translation="MVAKSITKEYSETLISNPFVKVIAGSLFLACLAKISISLPFTPV
                     PITFQTLGVFCLGLVMTPQMAVTTVVAYLLEGLFFPVFCSPMCGIAVFCGPTAGYLFS
                     FVPAVALISWLYGKFGRSEARSWVVAMILFVGGGVSLCLGALWLACFLKSIGVSNSLD
                     LVGAFKIGVLPFLIGKIVKIALVVQGRSVRRLFIGK"
     misc_feature    complement(410436..410966)
                     /locus_tag="CTDLC_0359"
                     /note="Uncharacterized conserved protein [General function
                     prediction only]; Region: BioY; COG1268"
                     /db_xref="CDD:224187"
     gene            complement(411275..411901)
                     /locus_tag="CTDLC_0360"
                     /db_xref="GeneID:12387848"
     CDS             complement(411275..411901)
                     /locus_tag="CTDLC_0360"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812291.1"
                     /db_xref="GI:385244447"
                     /db_xref="GeneID:12387848"
                     /translation="MRKAFLFGSVGCLCLLVTLESSGEGLYRGSNGRMTFISAVESAN
                     SQLELERKKEQRVIEILKEICKEIGVYESLFNEVTDSLEFCELLKKILAEKDSEDFLE
                     DVSTQDSLSSNEQPISEQTIGDRVEESAMISECMIKDVLNALQQCTESFQRKEEEASF
                     LERKDLELRERELAFKEERLSWEREKAEKEWAWKKEQYIRDLVKREQK"
     gene            complement(412063..412923)
                     /gene="dapA"
                     /locus_tag="CTDLC_0361"
                     /db_xref="GeneID:12387849"
     CDS             complement(412063..412923)
                     /gene="dapA"
                     /locus_tag="CTDLC_0361"
                     /EC_number="4.2.1.52"
                     /codon_start=1
                     /transl_table=11
                     /product="Dihydrodipicolinate synthase"
                     /protein_id="YP_005812292.1"
                     /db_xref="GI:385244448"
                     /db_xref="GeneID:12387849"
                     /translation="MSVLGACITPFKADLSIDFAALESVVRSQEHAGNGIILFGSTGE
                     GLSLTYEEKLSILSFVSTLNLNVPIFVGVTATSVQETMSWIDFAQQWPIDGFLVPTPL
                     YTRPGLNGQKAWFDRILSVSRKPIILYNNPIRTGVSLYPEVVKSFVSHPLCIGVKDSG
                     GSAQACELFAESGLRVFCGDDNLWPDMRLSGASGVISVLANVWPELARDYVAQGRPIE
                     AWKKVCSWLNLSTNPLGIKALMAAQKMIECDAVRPPLSIRDLQRRDELADILACRATL
                     QTELLSVCRQ"
     misc_feature    complement(412114..412917)
                     /gene="dapA"
                     /locus_tag="CTDLC_0361"
                     /note="Dihydrodipicolinate synthase family; Region:
                     DHDPS-like; cd00408"
                     /db_xref="CDD:188630"
     misc_feature    complement(order(412453..412455,412537..412539,
                     412798..412806,412813..412815,412906..412908))
                     /gene="dapA"
                     /locus_tag="CTDLC_0361"
                     /note="inhibitor site; inhibition site"
                     /db_xref="CDD:188630"
     misc_feature    complement(order(412336..412338,412453..412455,
                     412537..412539,412798..412806,412813..412815))
                     /gene="dapA"
                     /locus_tag="CTDLC_0361"
                     /note="active site"
                     /db_xref="CDD:188630"
     misc_feature    complement(order(412162..412167,412582..412584,
                     412594..412596,412615..412620,412690..412695,
                     412783..412788,412801..412803))
                     /gene="dapA"
                     /locus_tag="CTDLC_0361"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:188630"
     misc_feature    complement(412453..412455)
                     /gene="dapA"
                     /locus_tag="CTDLC_0361"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:188630"
     gene            complement(412933..414228)
                     /gene="lysC"
                     /locus_tag="CTDLC_0362"
                     /db_xref="GeneID:12387850"
     CDS             complement(412933..414228)
                     /gene="lysC"
                     /locus_tag="CTDLC_0362"
                     /EC_number="2.7.2.4"
                     /codon_start=1
                     /transl_table=11
                     /product="Aspartokinase"
                     /protein_id="YP_005812293.1"
                     /db_xref="GI:385244449"
                     /db_xref="GeneID:12387850"
                     /translation="MLRQETAPLVCKFGGTSVGTAQSIRRVCEIIQEERPSFVVVSAV
                     AGVTDWLEEFCRLPKGKRAALTEKIRERHESIAKELGIEVSLAIFWEILEHFEDVEEL
                     FSEDQARILAIGEDLSSTLICSYCCTYVLPLKRLEARQVILTDSQFLRAVPDLALMQT
                     AWGELALQEDTIYLMQGFLGATSSGKTTVLGRGGSDFSASLIGELCKARELRIYTDVC
                     GVHTADPKILKDTQLIDSLTFEEMQELASSGAKVLHQDMLKPCVRAKVPIFVTSTFNV
                     TKEGTWICASLNESTEGPVIKALSLKSNQALWFVEYNSPLVRLEDVLGCVRSLGFVPG
                     VVMAQSLGVYFTIDWEEYPQTITKALEAFGTVSCEGPLSLVALVGAKLASWSMSRVFE
                     ALHRTPVLCWSQTDTVINLIINKDFGVAVTELLHDCLFK"
     misc_feature    complement(412936..414213)
                     /gene="lysC"
                     /locus_tag="CTDLC_0362"
                     /note="aspartate kinase; Provisional; Region: PRK05925"
                     /db_xref="CDD:235646"
     misc_feature    complement(413377..414201)
                     /gene="lysC"
                     /locus_tag="CTDLC_0362"
                     /note="AAK_AK-HSDH-like: Amino Acid Kinase Superfamily
                     (AAK), AK-HSDH-like; this family includes the N-terminal
                     catalytic domain of aspartokinase (AK) of the bifunctional
                     enzyme AK- homoserine dehydrogenase (HSDH). These
                     aspartokinases are found in such...; Region:
                     AAK_AK-HSDH-like; cd04243"
                     /db_xref="CDD:239776"
     misc_feature    complement(order(413467..413469,413506..413508,
                     413641..413643,413884..413886,414085..414087,
                     414193..414195))
                     /gene="lysC"
                     /locus_tag="CTDLC_0362"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:239776"
     misc_feature    complement(order(413473..413478,413551..413553,
                     413557..413559,413566..413568,413581..413586,
                     414184..414189,414193..414195))
                     /gene="lysC"
                     /locus_tag="CTDLC_0362"
                     /note="nucleotide binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239776"
     misc_feature    complement(order(413644..413655,413884..413886,
                     414085..414087,414103..414105))
                     /gene="lysC"
                     /locus_tag="CTDLC_0362"
                     /note="aspartate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:239776"
     gene            complement(414221..415225)
                     /gene="asd"
                     /locus_tag="CTDLC_0363"
                     /db_xref="GeneID:12387851"
     CDS             complement(414221..415225)
                     /gene="asd"
                     /locus_tag="CTDLC_0363"
                     /EC_number="1.2.1.11"
                     /codon_start=1
                     /transl_table=11
                     /product="Aspartate-semialdehyde dehydrogenase"
                     /protein_id="YP_005812294.1"
                     /db_xref="GI:385244450"
                     /db_xref="GeneID:12387851"
                     /translation="MTMRIAILGATGLVGQKLIALLQNHKQWEIAELGASSEKHALRY
                     ESACLWQEPLMGMPESVRDLSIRSVEEIESNIVVSCLPSSVAFSAETTCLSSGKIVFS
                     NATAYRMHKAVPILIPEINSDHLSLLEEQPFLGKIITNSNCCVSGIALALKPLLLFNI
                     EHVHVITLQSASGAGYPGVSSLDLIGNTVPYILGEEEKILRETVKILGQPGFPAEFSI
                     TASVHRVPVAHGHVISVHVMFDQEVDLEEITSCYEKDSATYVLYDSPWHPQVRKDLAH
                     DDMRLHIGPISYGGNTRTIKMCILLHNLVRGAAGALIANMNLFRDRGGFVHQERLTYA
                     "
     misc_feature    complement(414257..415225)
                     /gene="asd"
                     /locus_tag="CTDLC_0363"
                     /note="aspartate-semialdehyde dehydrogenase; Reviewed;
                     Region: PRK08664"
                     /db_xref="CDD:236329"
     misc_feature    complement(414851..415216)
                     /gene="asd"
                     /locus_tag="CTDLC_0363"
                     /note="Semialdehyde dehydrogenase, NAD binding domain;
                     Region: Semialdhyde_dh; pfam01118"
                     /db_xref="CDD:250373"
     misc_feature    complement(414308..414772)
                     /gene="asd"
                     /locus_tag="CTDLC_0363"
                     /note="Glyceraldehyde 3-phosphate dehydrogenase,
                     C-terminal domain; Region: Gp_dh_C; cl19935"
                     /db_xref="CDD:268288"
     gene            complement(415235..415996)
                     /gene="dapB"
                     /locus_tag="CTDLC_0364"
                     /db_xref="GeneID:12387852"
     CDS             complement(415235..415996)
                     /gene="dapB"
                     /locus_tag="CTDLC_0364"
                     /EC_number="1.3.1.26"
                     /codon_start=1
                     /transl_table=11
                     /product="Dihydrodipicolinate reductase"
                     /protein_id="YP_005812295.1"
                     /db_xref="GI:385244451"
                     /db_xref="GeneID:12387852"
                     /translation="MRVADSIMKKSIGLVGDTGRMGVLLTQALLCRPHCFLGKGFSRR
                     SQTSLEEVVTENDILVDFSSPEVTSLLLDFLLKTPRPVIIGTTGFTNDSGVKTKLSAL
                     SEYVPVVVCANTSLGAYVQKRLAAFAAKLFSTSYDVRILETHHRAKADAISGTAISLA
                     EAIRSAKAESYEEEPEPFIEMHGSRLGNVCGEHEVSFVGEDERFVIRHEVFSRRVFSG
                     GVLLILEKIMGEGLPKGYYTSDVLYESLFQEKVFG"
     misc_feature    complement(415268..415981)
                     /gene="dapB"
                     /locus_tag="CTDLC_0364"
                     /note="Dihydrodipicolinate reductase [Amino acid transport
                     and metabolism]; Region: DapB; COG0289"
                     /db_xref="CDD:223366"
     misc_feature    complement(415658..415963)
                     /gene="dapB"
                     /locus_tag="CTDLC_0364"
                     /note="Dihydrodipicolinate reductase, N-terminus; Region:
                     DapB_N; pfam01113"
                     /db_xref="CDD:250369"
     misc_feature    complement(415271..415648)
                     /gene="dapB"
                     /locus_tag="CTDLC_0364"
                     /note="Dihydrodipicolinate reductase, C-terminus; Region:
                     DapB_C; pfam05173"
                     /db_xref="CDD:253059"
     gene            complement(416173..417900)
                     /locus_tag="CTDLC_0365"
                     /db_xref="GeneID:12387853"
     CDS             complement(416173..417900)
                     /locus_tag="CTDLC_0365"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane spanning protein"
                     /protein_id="YP_005812296.1"
                     /db_xref="GI:385244452"
                     /db_xref="GeneID:12387853"
                     /translation="MVSRVPGSSDPVDVNALSNLSPVQNQNSGVSVSAISLPNETVSK
                     SGKTLKYSTELIAGIVVLGVALAIVAIALTILAPGVPQSIVLAIAFSGISVGGVTTLR
                     SLINGIKTVVAPRMTFRQRAKSAALLGAGLTGAGLVLKLGSSYIPGGYGSALGKFGDI
                     SYNRGSGALFAGFAHYLYVRFFQSKKAASGEALTPEEMLIEGAKIRKLANGLVLLGVG
                     FACLGIALAVVGTLAVTGGAATALIVLAPPLISLGISLVISNMLHTTLGQWRAFARAQ
                     QDQDLLVDTKLKNISQADFSYRVDNNIEVVVDPRESNLPSIERLSQGEIDAALSLTKK
                     QQRILILSGLLLLAGVTCTLLAGFGGLPAVQVLLLFSIGGAVSSSAVPMVVSGMVHVA
                     HQLKARLQISLARRREARLKARMIREMDNRRWGESRVGLLSKKEQEETWKLVGKPVIF
                     QTEQAIREYVNGATKEERFQSILVATIILLAGLGVLSLTLIPGLAPISGGILAIGGAL
                     LGISITMYLQRFIQWLYEQLIKLRDYIQNRQSVIVQGASACDFDAEDIIVDLVAESFE
                     VDGDSFVES"
     gene            418070..419392
                     /gene="aroA"
                     /locus_tag="CTDLC_0366"
                     /db_xref="GeneID:12387854"
     CDS             418070..419392
                     /gene="aroA"
                     /locus_tag="CTDLC_0366"
                     /EC_number="2.5.1.19"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="YP_005812297.1"
                     /db_xref="GI:385244453"
                     /db_xref="GeneID:12387854"
                     /translation="MVSSNQDLLISPSIPYGEIAVPPSKSHSLRAILFASLSKGTSII
                     ENCLFSPDSQAMLTACEKMGAHVRRIGDSLHIQGNPDPHHCHPRYFHMGNSGIALRFL
                     TALSTLSPTPTLITGSHTLKRRPIAPLLSSLKQLGAHIRQKTSSSIPFTIHGPLSPGH
                     VTISGQDSQYASALAITAALAPYPLSFSIENLKERPWFDLTLDWLHSLNISFLRDQDS
                     LTFPGGQSLESFSYSVPGDYSSAAFLASFGLLSSSSKPTILRNLSSQDSQGDKLLFSL
                     LKQLGAHILIGKHHIEMHPSSFSGGEIDMDPFIDALPILAVLCCFAKNPSRLYNALGA
                     KDKESNRIEAIAHELQKMGGSVHPTRDGLYIEPSRLHGAVVDSHNDHRIAMALAVAGV
                     HASSGQTLLCNTQCINKSFPYFVIAAQTLHANVRHYQADFPLRSSFCR"
     misc_feature    418088..419344
                     /gene="aroA"
                     /locus_tag="CTDLC_0366"
                     /note="5-enolpyruvylshikimate-3-phosphate synthase [Amino
                     acid transport and metabolism]; Region: AroA; COG0128"
                     /db_xref="CDD:223206"
     misc_feature    418115..419314
                     /gene="aroA"
                     /locus_tag="CTDLC_0366"
                     /note="EPSP synthase domain. 3-phosphoshikimate
                     1-carboxyvinyltransferase
                     (5-enolpyruvylshikimate-3-phosphate synthase) (EC
                     2.5.1.19) catalyses the reaction between
                     shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP)
                     to form...; Region: EPSP_synthase; cd01556"
                     /db_xref="CDD:238797"
     misc_feature    order(418130..418141,418769..418780)
                     /gene="aroA"
                     /locus_tag="CTDLC_0366"
                     /note="hinge; other site"
                     /db_xref="CDD:238797"
     misc_feature    order(418142..418147,418157..418159,418349..418351,
                     418355..418360,418439..418441,418568..418576,
                     418649..418651,418658..418660,418997..418999,
                     419066..419068,419078..419083,419090..419092,
                     419210..419215,419294..419296)
                     /gene="aroA"
                     /locus_tag="CTDLC_0366"
                     /note="active site"
                     /db_xref="CDD:238797"
     gene            419334..419888
                     /gene="aroL"
                     /locus_tag="CTDLC_0367"
                     /db_xref="GeneID:12387855"
     CDS             419334..419888
                     /gene="aroL"
                     /locus_tag="CTDLC_0367"
                     /EC_number="2.7.1.71"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="YP_005812298.1"
                     /db_xref="GI:385244454"
                     /db_xref="GeneID:12387855"
                     /translation="MPTFDTTKQIFLCGLPSVGKTSFGQHLSQFLSLPFFDTDHLLSD
                     RFHGDSPKTIYQRYGEEGFCREEFLALTSVPVIPSIVALGGCTPIIEPSYAHILGRNS
                     ALLVLLELPIATLCQRLQHRSIPERLAHAPSLEDTLSQRLDKLRSLTSNAFSLRAETS
                     SEAVMRDCQSFCLRFLSTKESSYA"
     misc_feature    419349..419867
                     /gene="aroL"
                     /locus_tag="CTDLC_0367"
                     /note="Shikimate kinase [Amino acid transport and
                     metabolism]; Region: AroK; COG0703"
                     /db_xref="CDD:223775"
     misc_feature    419355..419864
                     /gene="aroL"
                     /locus_tag="CTDLC_0367"
                     /note="shikimate kinase; Provisional; Region: PRK00625"
                     /db_xref="CDD:134335"
     misc_feature    order(419373..419375,419388..419399)
                     /gene="aroL"
                     /locus_tag="CTDLC_0367"
                     /note="active site"
                     /db_xref="CDD:238977"
     gene            419881..420954
                     /gene="aroC"
                     /locus_tag="CTDLC_0368"
                     /db_xref="GeneID:12387856"
     CDS             419881..420954
                     /gene="aroC"
                     /locus_tag="CTDLC_0368"
                     /EC_number="4.2.3.5"
                     /codon_start=1
                     /transl_table=11
                     /product="Chorismate synthase"
                     /protein_id="YP_005812299.1"
                     /db_xref="GI:385244455"
                     /db_xref="GeneID:12387856"
                     /translation="MHNQYGSIFSITTWGESHGPAIGVVIDGCPAGLSLSPEDFLPAM
                     ARRRPGQLHTSPRQEPDLVTILSGVYQNKTTGTPISLLIENKDVSSSSYEQLQHCYRP
                     GHAQFAYEGKYGFADNRGGGRASARETASRVAAGVIAKKILLSQRIETLAFLSGFGTL
                     ESKNYPKLSDSLIQQVHTSPFYTLLPQEEIQNLLLLNPDDSFGGVVSFITSPLPIGLG
                     EPVFGKLPALLAAAMMSIPAAKGFEIGAGFSSSQMTGSAYLDAFIADESGVSLQSNRC
                     GGALGGISIGQPLEGRVAFKPTSSIKKPCSSVLKDGTLIAYRTPNQGRHDPCVAIRAV
                     AVVEAMLDLTLVDLLLQHRCTQL"
     misc_feature    419905..420900
                     /gene="aroC"
                     /locus_tag="CTDLC_0368"
                     /note="Chorismase synthase, the enzyme catalyzing the
                     final step of the shikimate pathway; Region:
                     Chorismate_synthase; cd07304"
                     /db_xref="CDD:143612"
     misc_feature    order(419908..419928,419947..419949,419953..419955,
                     419959..419961,419971..419976,420070..420075,
                     420079..420084,420103..420108,420112..420114,
                     420118..420120,420124..420126,420205..420219,
                     420247..420252,420274..420276,420478..420495,
                     420526..420528,420532..420540,420550..420552,
                     420556..420561,420568..420576,420580..420585,
                     420589..420591,420598..420612,420619..420624,
                     420628..420633,420643..420648,420706..420708,
                     420715..420723,420727..420735,420754..420756,
                     420760..420771,420778..420780,420898..420900)
                     /gene="aroC"
                     /locus_tag="CTDLC_0368"
                     /note="Tetramer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:143612"
     misc_feature    order(419932..419934,420019..420021,420187..420192,
                     420250..420261,420268..420270,420589..420594,
                     420763..420768,420772..420780,420865..420867,
                     420877..420879)
                     /gene="aroC"
                     /locus_tag="CTDLC_0368"
                     /note="active site"
                     /db_xref="CDD:143612"
     misc_feature    order(420187..420195,420247..420249,420253..420255,
                     420586..420594,420766..420768,420772..420780,
                     420856..420858,420865..420867,420874..420876)
                     /gene="aroC"
                     /locus_tag="CTDLC_0368"
                     /note="FMN-binding site [chemical binding]; other site"
                     /db_xref="CDD:143612"
     gene            420939..422072
                     /gene="aroB"
                     /locus_tag="CTDLC_0369"
                     /db_xref="GeneID:12387857"
     CDS             420939..422072
                     /gene="aroB"
                     /locus_tag="CTDLC_0369"
                     /EC_number="4.2.3.4"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="YP_005812300.1"
                     /db_xref="GI:385244456"
                     /db_xref="GeneID:12387857"
                     /translation="MYPIMIELVTDSPHPIHLVDSLQNPKLFASLSTDFPLIFITNTK
                     LNALILPPLLDLARSLGFSVETLTIPEGEETKTGDTFLSLHQQLTDLNVPRQATLIGV
                     GGGVILDIAGFVAATHCRGMPFIAIPTTLVAMIDASIGGKNGINLNHIKNRIGSFYLP
                     KAVWICPRKLSFLPQQELHHGIAECIKHAYIADSAILPLLQDPNALKKEDKLSLLIKK
                     NCLCKASVVQQDVRDYAKRQILNFGHTLGHALEMLFIGKIPHSCAISVGMVLETKLSL
                     SLGVARSPAILHSLIQDLLRYQLPVSLKDLYMRAQIPPHNCDQILSALTYDKKKQNTP
                     LPPFVMIEEIGLAASFDGRFCQTISKHILTKVLEEEFYAMHNN"
     misc_feature    421056..422039
                     /gene="aroB"
                     /locus_tag="CTDLC_0369"
                     /note="Dehydroquinate synthase (DHQS) catalyzes the
                     conversion of DAHP to DHQ in shikimate pathway for
                     aromatic compounds synthesis; Region: DHQS; cd08195"
                     /db_xref="CDD:173954"
     misc_feature    order(421062..421064,421248..421256,421263..421265,
                     421272..421274,421323..421328,421332..421334,
                     421389..421391,421398..421400,421443..421445,
                     421467..421469,421488..421490,421500..421502,
                     421668..421670,421680..421682,421716..421718)
                     /gene="aroB"
                     /locus_tag="CTDLC_0369"
                     /note="active site"
                     /db_xref="CDD:173954"
     misc_feature    order(421170..421172,421191..421196,421275..421277,
                     421284..421286,421290..421298,421362..421367,
                     421392..421409)
                     /gene="aroB"
                     /locus_tag="CTDLC_0369"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:173954"
     misc_feature    order(421488..421490,421668..421670,421716..421718)
                     /gene="aroB"
                     /locus_tag="CTDLC_0369"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:173954"
     gene            421987..423489
                     /gene="aroDE"
                     /locus_tag="CTDLC_0370"
                     /db_xref="GeneID:12387858"
     CDS             421987..423489
                     /gene="aroDE"
                     /locus_tag="CTDLC_0370"
                     /EC_number="1.1.1.25"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate 5-dehydrogenase"
                     /protein_id="YP_005812301.1"
                     /db_xref="GI:385244457"
                     /db_xref="GeneID:12387858"
                     /translation="MMDDFAKLYLNTFLQKSWRKNSMLCTTISGPSFLEAKKQILRSL
                     KECHCFEMRVDLLSVSCLELKKLMELAPISILAWKKPESCSQADWIDKMQSLAELNPN
                     YLDLEKDFPEEDMIRIRQLHPQIKIIRSLHTSEHTDIIQLYAHMRSSAADYYKFAVSS
                     SSTTDLLDICHQKRSLPENTTVVCLGGMGRPSRILSPILQNPFTYARSTGSSPVAPGQ
                     FSLKHHYFYNFASLSAQSPICALIGDTSRSIGHLTHNPFFSQLGVACPYIKLPLTPQE
                     LPKFFSTIRTQPFLGVSVTSPLKTAVLPFLDKQAPSVKASGSCNTLVIRQGEIEGHDT
                     DGEGLFSVLMQHQIPLNNQRVAIIGAGGAAQSIATRLSRANCELLIFNRTKAHAEDLA
                     SRCQAKAFSLEELPLHRVSLIINCLPPSCTIPKAVAPCVVDINTIPKHSTFTQYARSQ
                     GSSIIYGHEMFTQQALLQFRLWFPTLSFKHLEKTFIRRAAVLASLFSIAP"
     misc_feature    422053..423474
                     /gene="aroDE"
                     /locus_tag="CTDLC_0370"
                     /note="bifunctional 3-dehydroquinate dehydratase/shikimate
                     dehydrogenase protein; Reviewed; Region: aroDE; PRK09310"
                     /db_xref="CDD:137204"
     misc_feature    422053..422679
                     /gene="aroDE"
                     /locus_tag="CTDLC_0370"
                     /note="Type I 3-dehydroquinase, (3-dehydroquinate
                     dehydratase or DHQase); Region: DHQase_I; cd00502"
                     /db_xref="CDD:188633"
     misc_feature    order(422065..422067,422137..422139,422143..422145,
                     422221..422223,422380..422382,422449..422451,
                     422563..422565,422626..422631,422638..422640)
                     /gene="aroDE"
                     /locus_tag="CTDLC_0370"
                     /note="active site"
                     /db_xref="CDD:188633"
     misc_feature    422449..422451
                     /gene="aroDE"
                     /locus_tag="CTDLC_0370"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:188633"
     misc_feature    order(422485..422487,422497..422499,422506..422508,
                     422566..422571,422581..422583,422656..422658,
                     422668..422670,422677..422679)
                     /gene="aroDE"
                     /locus_tag="CTDLC_0370"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:188633"
     misc_feature    422707..422952
                     /gene="aroDE"
                     /locus_tag="CTDLC_0370"
                     /note="Shikimate dehydrogenase substrate binding domain;
                     Region: Shikimate_dh_N; pfam08501"
                     /db_xref="CDD:254837"
     misc_feature    422986..423405
                     /gene="aroDE"
                     /locus_tag="CTDLC_0370"
                     /note="NAD(P) binding domain of Shikimate dehydrogenase;
                     Region: NAD_bind_Shikimate_DH; cd01065"
                     /db_xref="CDD:133443"
     misc_feature    order(422989..422991,423292..423294,423367..423369,
                     423376..423378)
                     /gene="aroDE"
                     /locus_tag="CTDLC_0370"
                     /note="shikimate binding site; other site"
                     /db_xref="CDD:133443"
     misc_feature    order(423064..423066,423073..423075,423130..423135,
                     423232..423240,423286..423288,423355..423357,
                     423364..423369)
                     /gene="aroDE"
                     /locus_tag="CTDLC_0370"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:133443"
     gene            423531..424316
                     /locus_tag="CTDLC_0371"
                     /db_xref="GeneID:12387859"
     CDS             423531..424316
                     /locus_tag="CTDLC_0371"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812302.1"
                     /db_xref="GI:385244458"
                     /db_xref="GeneID:12387859"
                     /translation="MRLCFILFLLLSPLISEASQHIITVKTIHEIASDILYDDANYWL
                     IFDIDDVLFEGAEALSHSAWFERSIQGMRALGTSEQEAWDTLYPDWLSIQRQGSIKQI
                     ETAIPLLITKVQNQNKIVFAYSERKVCAQDVTLEQLAKINLSFEKANLPYTSLPSNIC
                     FTKGVLFGSEIHKGPGLQRFLDAQPSLPEKVIYIDNEKYNVLRIGEVCKQKNIPYLGI
                     VYTASKYHPPIYLPDIARIQYLYRQKLISNEAAALLSRHRLDK"
     misc_feature    423594..424313
                     /locus_tag="CTDLC_0371"
                     /note="Protein of unknown function (DUF2608); Region:
                     DUF2608; pfam11019"
                     /db_xref="CDD:256252"
     gene            424386..425786
                     /locus_tag="CTDLC_0372"
                     /db_xref="GeneID:12387860"
     CDS             424386..425786
                     /locus_tag="CTDLC_0372"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812303.1"
                     /db_xref="GI:385244459"
                     /db_xref="GeneID:12387860"
                     /translation="MLEVVVSFRSVLLTALLSLSFTTTMQAAHHHYHRYTDKLHRQNH
                     KKDLISPKPTEQEACNTSSLSKELIPLSEQRGLLSPICDFISERPCLHGVSVRNLKQA
                     LKNSAGTQIALDWSILPQWFNPRVSHAPKLSIRDFGYSAHQTVTEATPPCWQNCFNPS
                     AAVTIYDSSYGKGVFQISYTLVRYWRENAATAGDAMMLAGSINDYPSRQNIFSQFTFS
                     QNFPNERVSLTIGQYSLYAIDGTLYNNDQQLGFISYALSQNPTATYSSGSLGAYLQVA
                     PTASTSLQIGFQDAYNISGSSIKWSNLTKNRYNFHGFASWAPRCCLGSGQYSVLLYVT
                     RQVPEQMEQTMGWSVNASQHISSKLYVFGRYSGVTGHVFPINRTYSFGMASANLFNRN
                     PQDLFGIACAFNNVHLSASPNTKRKYETVIEGFATIGCGPYLSFAPDFQLYLYPALRP
                     NKQSARVYSVRANLAI"
     misc_feature    424908..425777
                     /locus_tag="CTDLC_0372"
                     /note="Carbohydrate-selective porin, OprB family; Region:
                     OprB; pfam04966"
                     /db_xref="CDD:252911"
     gene            425855..426442
                     /locus_tag="CTDLC_0373"
                     /db_xref="GeneID:12387861"
     CDS             425855..426442
                     /locus_tag="CTDLC_0373"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812304.1"
                     /db_xref="GI:385244460"
                     /db_xref="GeneID:12387861"
                     /translation="MPYGTRYPTLAFHTGGVGESDDGMPPQPFETFCYDSALLQAKIE
                     NFNIVPYTSVLPKELFGNILPVDQCTKFFKHGAVLEVIMAGRGATVTDGTQAIATGVG
                     ICWGKDKNGELIRGWAAEYVEFFPTWIDDEIAESHAKMWLKKSLQHELDLRSISKHSE
                     FQYFHNYINIRKKFGFCLTALGFLNFENAAPAVIQ"
     misc_feature    425861..426391
                     /locus_tag="CTDLC_0373"
                     /note="Pyruvoyl-dependent arginine decarboxylase
                     (PvlArgDC) [Amino acid    transport and metabolism];
                     Region: COG1945"
                     /db_xref="CDD:224856"
     gene            426458..427909
                     /gene="arcD"
                     /locus_tag="CTDLC_0374"
                     /db_xref="GeneID:12387862"
     CDS             426458..427909
                     /gene="arcD"
                     /locus_tag="CTDLC_0374"
                     /codon_start=1
                     /transl_table=11
                     /product="Arginine/ornithine antiporter"
                     /protein_id="YP_005812305.1"
                     /db_xref="GI:385244461"
                     /db_xref="GeneID:12387862"
                     /translation="MLLKKRSPTSILGTLALTGIVISSMIGGGIFSLPQNMVASASAG
                     AVMLAWMLSGIGIFFIANTFKTLSIIRPDLKAGIYTYSREGFGPYVGFTIAWGYWLCQ
                     IFGNVDYAVITMDALNYFFPPYFAGGNTIPAILLGSLLIWIFNYIVLRGIRQASFVNI
                     IGAVCTLIPLLLFILITARFFKFSIFKTDFWGTAPQHTLGSIGSQLKSTMLVTLWAFI
                     GIEGAVVISGRAANLSSVGKATILGFSGCLLIYVLLSLLPFGSLFQYQLAKIADPSTA
                     GVLNILVGKWGEVLMNTGLLIAVLTSWLSWTILASEIPYAAAKNGTFPECFAIENSKH
                     APSFSLFMTSGLMQITMLLVYFSSNAWNTMLEITGVMVLPAYLTSSLFLVKFSLSKKY
                     PKQAAIKARIAMITSLLGSLYSLWLIYAGGLQHLFMVAILLALGIPFYVDSGIRHKQE
                     KTFLNRKEILKMTIVALAALLAIFLFSANKIHL"
     misc_feature    426491..427852
                     /gene="arcD"
                     /locus_tag="CTDLC_0374"
                     /note="transporter, basic amino acid/polyamine antiporter
                     (APA) family; Region: 2A0302; TIGR00905"
                     /db_xref="CDD:129983"
     gene            428081..429139
                     /gene="yjbR"
                     /locus_tag="CTDLC_0375"
                     /db_xref="GeneID:12387863"
     CDS             428081..429139
                     /gene="yjbR"
                     /locus_tag="CTDLC_0375"
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid oxidase family"
                     /protein_id="YP_005812306.1"
                     /db_xref="GI:385244462"
                     /db_xref="GeneID:12387863"
                     /translation="MHIAVLGAGYAGLSVTWHLLLYTQGRISVDLFDPTPIGSGASGL
                     SSGLLHGFTGKKAIKPPLANLGITTTHSLITKASLSIGEPIVTSNGILRPAASQEQAT
                     IFMQRAQEFPDETEWWDKARCEITVPGMVIADGLGALYIKHGVTIDNDKYISGLWNAC
                     ASLGTQYYDELIDDISAIAEFYDHIIVTPGANADILPELKHLPLSKVKGQLVEIAWPA
                     EIPMPPFSINGPKYMVADTTRNTCILGATFEHNQPDATPDAQVAYQEIMPPILALFPG
                     LKDAQVLNYYAGMRSSSPTHLPMISRVQEKLWYLGGLGSKGLLYHGLLGDMLAQALLR
                     DSTAYIAKEFLYTPEGAA"
     misc_feature    428081..429124
                     /gene="yjbR"
                     /locus_tag="CTDLC_0375"
                     /note="Glycine/D-amino acid oxidases (deaminating) [Amino
                     acid transport and metabolism]; Region: DadA; COG0665"
                     /db_xref="CDD:223737"
     misc_feature    428090..>428191
                     /gene="yjbR"
                     /locus_tag="CTDLC_0375"
                     /note="NAD(P)-binding Rossmann-like domain; Region:
                     NAD_binding_8; cl19134"
                     /db_xref="CDD:267487"
     misc_feature    <428345..428980
                     /gene="yjbR"
                     /locus_tag="CTDLC_0375"
                     /note="NAD(P)-binding Rossmann-like domain; Region:
                     NAD_binding_8; cl19134"
                     /db_xref="CDD:267487"
     gene            complement(429181..430194)
                     /gene="mdhC"
                     /locus_tag="CTDLC_0376"
                     /db_xref="GeneID:12387864"
     CDS             complement(429181..430194)
                     /gene="mdhC"
                     /locus_tag="CTDLC_0376"
                     /EC_number="1.1.1.37"
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="YP_005812307.1"
                     /db_xref="GI:385244463"
                     /db_xref="GeneID:12387864"
                     /translation="MRFVKVKRGWLMVSQTVSVAVTGGTGQIAYSFLFSLAHGDVFGL
                     DCGIDLRIYDIPGTERALSGVRMELDDGAFPLLQRVQVTTSLHDAFDGIDAAFLIGSV
                     PRGPGMERRDLLKKNGEIFATQGKALNTTAKRDAKIFVVGNPVNTNCWIAMNHAPRLL
                     RKNFHAMLRLDQNRMHSMLSHRAEVPLSAVSQVVVWGNHSAKQVPDFTQALINDRPIA
                     ETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARSIYQPKEGEWFSS
                     GVCSDHNPYGLPEDLIFGFPCRMLATGEYEVIPRLPWDAFIRGKMQISLDEILQEKAS
                     VSL"
     misc_feature    complement(429187..430155)
                     /gene="mdhC"
                     /locus_tag="CTDLC_0376"
                     /note="malate dehydrogenase; Provisional; Region:
                     PRK05442"
                     /db_xref="CDD:235468"
     misc_feature    complement(429187..430152)
                     /gene="mdhC"
                     /locus_tag="CTDLC_0376"
                     /note="NAD-dependent, lactate dehydrogenase-like,
                     2-hydroxycarboxylate dehydrogenase family; Region:
                     LDH_MDH_like; cl17195"
                     /db_xref="CDD:266546"
     misc_feature    complement(order(429433..429435,429598..429600,
                     429685..429687,429694..429696,429766..429774,
                     429835..429837,429895..429900,430030..430035,
                     430111..430119))
                     /gene="mdhC"
                     /locus_tag="CTDLC_0376"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:133419"
     misc_feature    complement(order(429415..429417,429427..429429,
                     429646..429648,429664..429669,429673..429678,
                     429979..429987,429991..429996,430000..430002,
                     430012..430014,430093..430095,430105..430107))
                     /gene="mdhC"
                     /locus_tag="CTDLC_0376"
                     /note="LDH/MDH dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:133419"
     misc_feature    complement(order(429598..429600,429673..429675,
                     429766..429768))
                     /gene="mdhC"
                     /locus_tag="CTDLC_0376"
                     /note="substrate binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:133419"
     gene            complement(430352..430492)
                     /gene="ltuA"
                     /locus_tag="CTDLC_0377"
                     /db_xref="GeneID:12387865"
     CDS             complement(430352..430492)
                     /gene="ltuA"
                     /locus_tag="CTDLC_0377"
                     /codon_start=1
                     /transl_table=11
                     /product="Late transcription unit A protein"
                     /protein_id="YP_005812308.1"
                     /db_xref="GI:385244464"
                     /db_xref="GeneID:12387865"
                     /translation="MFFIRARFIGFLDVHGYLAAKKGQQVMRSGSSIWVGSHGPIFYK
                     VF"
     gene            complement(430607..432184)
                     /gene="pgi"
                     /locus_tag="CTDLC_0378"
                     /db_xref="GeneID:12387866"
     CDS             complement(430607..432184)
                     /gene="pgi"
                     /locus_tag="CTDLC_0378"
                     /EC_number="5.3.1.9"
                     /EC_number="5.1.3.15"
                     /note="glucose-6-phosphate isomerase"
                     /codon_start=1
                     /transl_table=11
                     /product="Glucose-6 phosphate 1-epimerase"
                     /protein_id="YP_005812309.1"
                     /db_xref="GI:385244465"
                     /db_xref="GeneID:12387866"
                     /translation="MMGKGFLDCESLVALQEMALHPIDLTASGCLSEERIQKNSLSAE
                     GFTYSYATERVDDRCLEALQGLTEERELIKQMECMQQGAIMNRIEGFQSESRPVLHTA
                     TRAWVRDQDLHEEAAAIARHSKEEALRLAEFLYIARAKFSTLVQMGIGGSELGPKAMY
                     FAMQGSCPSDKRIFFVSNIDPDNAAEVLREIDLEQTLVVVVSKSGTTLEPAANEELFR
                     QAYQNKGLSIAEHFVAVTSQGSPMDDKSRYLEVFHLWDSIGGRFSATSMVGGVVLGFA
                     FGYEAFIEFLQGAAAIDAHALTPKMRENLPLLSAMLGVWNRNLLGYPTTAVIPYSTGL
                     KYFTAHLQQCGMESNGKSISREGKEISFRTSPIIWGDVGTNCQHSFFQSLHQGTDIVP
                     VEFIGFLHNQRGLDCVLSGSSSSQKLFANLVAQSLALAQGRDNANSNKRFKGNRPSSI
                     LVAQQLSPRIAGSLLAFYEHKFAFQGFCWGINSFDQEGVSLGKELATQIIGIMSGNAP
                     VEFSEARGMLRLFNVLT"
     misc_feature    complement(430616..432184)
                     /gene="pgi"
                     /locus_tag="CTDLC_0378"
                     /note="glucose-6-phosphate isomerase; Provisional; Region:
                     pgi; PRK14095"
                     /db_xref="CDD:237608"
     misc_feature    complement(431357..431767)
                     /gene="pgi"
                     /locus_tag="CTDLC_0378"
                     /note="Phosphoglucose isomerase (PGI) contains two SIS
                     (Sugar ISomerase) domains. This classification is based on
                     the alignment of the first SIS domain. PGI is a
                     multifunctional enzyme which as an intracellular dimer
                     catalyzes the reversible isomerization of...; Region:
                     SIS_PGI_1; cd05015"
                     /db_xref="CDD:240146"
     misc_feature    complement(order(431405..431407,431564..431566,
                     431573..431581,431729..431734,431738..431740))
                     /gene="pgi"
                     /locus_tag="CTDLC_0378"
                     /note="active site"
                     /db_xref="CDD:240146"
     misc_feature    complement(order(431537..431539,431546..431548,
                     431558..431560,431645..431656))
                     /gene="pgi"
                     /locus_tag="CTDLC_0378"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:240146"
     misc_feature    complement(430688..431218)
                     /gene="pgi"
                     /locus_tag="CTDLC_0378"
                     /note="Phosphoglucose isomerase (PGI) contains two SIS
                     (Sugar ISomerase) domains. This classification is based on
                     the alignment of the second SIS domain. PGI is a
                     multifunctional enzyme which as an intracellular dimer
                     catalyzes the reversible isomerization of...; Region:
                     SIS_PGI_2; cd05016"
                     /db_xref="CDD:240147"
     misc_feature    complement(order(430904..430906,430913..430915,
                     430937..430939,430943..430945,431027..431029,
                     431036..431041,431048..431053,431060..431068,
                     431072..431074,431132..431137,431144..431146,
                     431156..431158,431192..431194,431216..431218))
                     /gene="pgi"
                     /locus_tag="CTDLC_0378"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:240147"
     misc_feature    complement(order(431144..431146,431156..431158))
                     /gene="pgi"
                     /locus_tag="CTDLC_0378"
                     /note="active site"
                     /db_xref="CDD:240147"
     gene            complement(432297..433640)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /db_xref="GeneID:12387867"
     CDS             complement(432297..433640)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="protein HflX"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="YP_005812310.1"
                     /db_xref="GI:385244466"
                     /db_xref="GeneID:12387867"
                     /translation="MKKDNRDGKKEWQSAIGWRFLLPREEQDPAQALAVCCYTNRAEQ
                     DRVPEYVEELISLANSCDLSVLETCTWLLRAPSSSFYLNEGKLEEIERILEEFPTIGT
                     LLIDEEISPSQQRNLEKRLRVVVLDRTELILEIFASRALTAEAGLQVELAQARYLLPR
                     LKRMWGHLSRQKSGGSGGGFVKGEGEKQIELDRRIVRERIHKLSRDLKNVERQREERR
                     KAKKRNQIPTFALIGYTNSGKSTLLNLLTSADTYVENKLFATLDPKTRRCVLPCGQRV
                     LLTDTVGFIRKLPHTLVAAFKSTLEAALQEDILLHVVDASHPLALEYVETTKAILQEL
                     GITQPQVITVLNKMDKVADGVTASRLRLMSPNPVCVSAKTGEGIRELLRSMEDMVQEE
                     YPQATLHLPYKEYGLFTELCDAGLVISHYYENDLLIVKAFLPNNLQKRYSEYIVE"
     misc_feature    complement(432303..433562)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="GTPases [General function prediction only]; Region:
                     HflX; COG2262"
                     /db_xref="CDD:225171"
     misc_feature    complement(433230..433496)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="GTP-binding GTPase N-terminal; Region: GTP-bdg_N;
                     pfam13167"
                     /db_xref="CDD:205348"
     misc_feature    complement(432474..433085)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="HflX GTPase family; Region: HflX; cd01878"
                     /db_xref="CDD:206666"
     misc_feature    complement(432921..432944)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="G1 box; other site"
                     /db_xref="CDD:206666"
     misc_feature    complement(order(432522..432530,432594..432596,
                     432600..432605,432918..432929,432933..432935))
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="GTP/Mg2+ binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:206666"
     misc_feature    complement(432840..432881)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="Switch I region; other site"
                     /db_xref="CDD:206666"
     misc_feature    complement(432849..432851)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="G2 box; other site"
                     /db_xref="CDD:206666"
     misc_feature    complement(432792..432803)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="G3 box; other site"
                     /db_xref="CDD:206666"
     misc_feature    complement(432723..432794)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="Switch II region; other site"
                     /db_xref="CDD:206666"
     misc_feature    complement(432594..432605)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="G4 box; other site"
                     /db_xref="CDD:206666"
     misc_feature    complement(432522..432530)
                     /gene="hflX"
                     /locus_tag="CTDLC_0379"
                     /note="G5 box; other site"
                     /db_xref="CDD:206666"
     gene            complement(433653..434453)
                     /gene="phnP"
                     /locus_tag="CTDLC_0380"
                     /db_xref="GeneID:12387868"
     CDS             complement(433653..434453)
                     /gene="phnP"
                     /locus_tag="CTDLC_0380"
                     /EC_number="3.-.-.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Metal-dependent hydrolase"
                     /protein_id="YP_005812311.1"
                     /db_xref="GI:385244467"
                     /db_xref="GeneID:12387868"
                     /translation="MEETSSSGKIVFLGTGDSEGIPVPFCSCEVCSQGRICRLRSSVW
                     VQSQGKNFIIDTGPDLRTQLLRYRVPRLDGVFLTHPHYDHIGGIDDLRSWYITHLESV
                     PIILSSFTYDYLCKTKEHLVQKETPNNSLAASLRYTILNEKCGEQEFLGIPFTYVSYF
                     QKNCQVTGYRFGDLAYLTDMSHYDEQIVDYLQGVNTIIVSASLGVLPKAFGSRTPSHL
                     TLEQADLLMEKVGASRLVITHVSHYLHKVLEKDVTRECAYDGMELLWT"
     misc_feature    complement(433656..434441)
                     /gene="phnP"
                     /locus_tag="CTDLC_0380"
                     /note="Metal-dependent hydrolases of the beta-lactamase
                     superfamily I [General function prediction only]; Region:
                     PhnP; COG1235"
                     /db_xref="CDD:224156"
     gene            complement(434482..435261)
                     /gene="artJ"
                     /locus_tag="CTDLC_0381"
                     /db_xref="GeneID:12387869"
     CDS             complement(434482..435261)
                     /gene="artJ"
                     /locus_tag="CTDLC_0381"
                     /codon_start=1
                     /transl_table=11
                     /product="Arginine-binding protein"
                     /protein_id="YP_005812312.1"
                     /db_xref="GI:385244468"
                     /db_xref="GeneID:12387869"
                     /translation="MSMCIKRKKTWIAFLAVVCSFCLTGCLKEGGDSNSEKFIVGTNA
                     TYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITG
                     MSITPSRLKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQS
                     LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVL
                     GYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN"
     misc_feature    complement(434497..435153)
                     /gene="artJ"
                     /locus_tag="CTDLC_0381"
                     /note="Bacterial periplasmic substrate-binding proteins;
                     Region: PBPb; smart00062"
                     /db_xref="CDD:214497"
     misc_feature    complement(434494..435147)
                     /gene="artJ"
                     /locus_tag="CTDLC_0381"
                     /note="Bacterial periplasmic transport systems use
                     membrane-bound complexes and substrate-bound,
                     membrane-associated, periplasmic binding proteins (PBPs)
                     to transport a wide variety of  substrates, such as, amino
                     acids, peptides, sugars, vitamins and inorganic...;
                     Region: PBPb; cd00134"
                     /db_xref="CDD:238078"
     misc_feature    complement(order(434692..434694,434806..434808,
                     434935..434937,435010..435012,435124..435126))
                     /gene="artJ"
                     /locus_tag="CTDLC_0381"
                     /note="substrate binding pocket [chemical binding]; other
                     site"
                     /db_xref="CDD:238078"
     misc_feature    complement(order(434713..434715,434731..434733,
                     434743..434745))
                     /gene="artJ"
                     /locus_tag="CTDLC_0381"
                     /note="membrane-bound complex binding site; other site"
                     /db_xref="CDD:238078"
     misc_feature    complement(434599..434616)
                     /gene="artJ"
                     /locus_tag="CTDLC_0381"
                     /note="hinge residues; other site"
                     /db_xref="CDD:238078"
     gene            complement(435324..436160)
                     /gene="aroG"
                     /locus_tag="CTDLC_0382"
                     /db_xref="GeneID:12387870"
     CDS             complement(435324..436160)
                     /gene="aroG"
                     /locus_tag="CTDLC_0382"
                     /EC_number="2.5.1.54"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="YP_005812313.1"
                     /db_xref="GI:385244469"
                     /db_xref="GeneID:12387870"
                     /translation="MGKKRVPLPHVFNSNRSPVIRLSETVSIGGGTPIIIAGPCTLES
                     QEHAITLGLQVKSAGAHIFRGSIRKPRTNPHSFQGWPPDHVVWHSRAKAVHGLLTETE
                     VLDVRDVEITAEHVDLLRVGARNMQNFVLLDEVGQSHRPVILKRNPSATISEWLSAAE
                     YLLQHASCPGVILCERGIRTFETTTRYTLDLNTVAWIKKETSLPVIVDPSHASGRRDL
                     VLPLARAAIALGADGLMIEVHEHPELALCDGSQHILPCELEELGLWVQEVGSLETGAV
                     FV"
     misc_feature    complement(435345..436154)
                     /gene="aroG"
                     /locus_tag="CTDLC_0382"
                     /note="3-deoxy-7-phosphoheptulonate synthase; Reviewed;
                     Region: PRK08673"
                     /db_xref="CDD:181535"
     misc_feature    complement(435348..436115)
                     /gene="aroG"
                     /locus_tag="CTDLC_0382"
                     /note="phospho-2-dehydro-3-deoxyheptonate aldolase;
                     Region: DAHP_synth_Bsub; TIGR01361"
                     /db_xref="CDD:233375"
     gene            436647..437402
                     /locus_tag="CTDLC_0383"
                     /db_xref="GeneID:12387871"
     CDS             436647..437402
                     /locus_tag="CTDLC_0383"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812314.1"
                     /db_xref="GI:385244470"
                     /db_xref="GeneID:12387871"
                     /translation="MIARLLKAMFGSIPCYPGYNNIPAYSNSYFYCTLCDGVVSPTNV
                     DIAIVVPNKPTAHSESKLSVLRCKNHPVKGLHSGGPITSLRGLIPFSSTLLEETHQKM
                     LNLCARVHCLDVLTVCGTLIASLLAITGAILQFIVAVPIPTFIPLILFGVAIAFYLGA
                     FLCTRISQKDTLRWQALSKNIIRSSHNVPVQAGTERYTLLTEFPPTCYENHSIDLYSI
                     RPSSWCAPRVVVKKTACKLSARIQKILKNQRGH"
     gene            complement(437413..439032)
                     /locus_tag="CTDLC_0384"
                     /db_xref="GeneID:12387872"
     CDS             complement(437413..439032)
                     /locus_tag="CTDLC_0384"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane associated protein"
                     /protein_id="YP_005812315.1"
                     /db_xref="GI:385244471"
                     /db_xref="GeneID:12387872"
                     /translation="MCCVDGSNSIQQRMRFCEYRTAAQEAKTSLSSDCSLLEARLALR
                     ALAKHHEYSAWREAFLRSQERFPSLEADRDIHEDLAASLLQKNIRHSSLTVRVITILA
                     VGMARDYRLVPIVLQALSDDSDTVREIAVQVAVMYGSSCLLRAVGDLAKNDSSIQVRI
                     TAYRAAAVLEIQDLVPHLRVVVQNTQLDGTERREAWRSLCVLTRPHSGVLTGIDQALM
                     TCEMLKEYPEKCTEEQIRTLLAADHPEVQVATLQIILRGGRVFRSSSIMESVQKLACN
                     SLSARVQMQAAAILYLEGDPFGEDKLTEGLSATSSILCEAASEAVCSLGIHGVHLAGR
                     FLSKVQGMRSRVNLAFALLVSREKVEEAGDVVASFIHRIEPCRAIEQFLCEDQKIFVA
                     SSPLQVEIMKRDLAKKIIRLLVAAQYSKAKMVVAQYLAGQQVGWSFCSEVFWEEGDSE
                     DFVEPLQEESFAFALEKALSFLQREGGEAGLHAVISLYPHSRWQDKLTILEAIAYSEN
                     RIATCFLRERCLQEAASLQSAAAGAVFALFK"
     misc_feature    complement(437689..438678)
                     /locus_tag="CTDLC_0384"
                     /note="FOG: HEAT repeat [Energy production and
                     conversion]; Region: COG1413"
                     /db_xref="CDD:224331"
     gene            complement(439047..439382)
                     /gene="ycfF"
                     /locus_tag="CTDLC_0385"
                     /db_xref="GeneID:12387873"
     CDS             complement(439047..439382)
                     /gene="ycfF"
                     /locus_tag="CTDLC_0385"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812316.1"
                     /db_xref="GI:385244472"
                     /db_xref="GeneID:12387873"
                     /translation="MTTIFERIIEGAVECDKVFEDENFIVIKDKFPQAPVHLLIIPKK
                     HIEKLQDIQGDDFLLLAEAGKIIQLMARNFGIENGYRVVVNNGLEGGQSVFHLHIHLL
                     GGGLLGSIA"
     misc_feature    complement(439098..439376)
                     /gene="ycfF"
                     /locus_tag="CTDLC_0385"
                     /note="HIT family: HIT (Histidine triad) proteins, named
                     for a motif related to the sequence HxHxH/Qxx (x, a
                     hydrophobic amino acid), are a superfamily of nucleotide
                     hydrolases and transferases, which act on the
                     alpha-phosphate of ribonucleotides. On the basis...;
                     Region: HIT_like; cl00228"
                     /db_xref="CDD:260280"
     misc_feature    complement(order(439101..439103,439128..439130,
                     439266..439268,439272..439274,439296..439298,
                     439302..439304))
                     /gene="ycfF"
                     /locus_tag="CTDLC_0385"
                     /note="nucleotide binding site/active site [active]"
                     /db_xref="CDD:238263"
     gene            complement(439379..440293)
                     /locus_tag="CTDLC_0386"
                     /db_xref="GeneID:12387874"
     CDS             complement(439379..440293)
                     /locus_tag="CTDLC_0386"
                     /codon_start=1
                     /transl_table=11
                     /product="MYG1 protein"
                     /protein_id="YP_005812317.1"
                     /db_xref="GI:385244473"
                     /db_xref="GeneID:12387874"
                     /translation="MFVVLLSRGSRRIMRMQIPRSVGTHDGSFHADEVTACALLIMFD
                     LVDENKIVRTRDPQKLAQCEYVCDVGGRYSTEHKRFDHHQVSYTGSWSSAGMVLDYLH
                     GLGFLSHDEYEYLNNTLVHGVDEQDNGRFFSKEGFCSFSDIIKIYNPLEEGGNTDKEF
                     FFALRFAIDLLTRLREKFCYDRVCRDIVKQVMEKESVCLRFDRPLAWQENFFSLGGES
                     HPAAFVSFPCSDQWILRGIPPTLDRRMEVRIPFPEEWAGLLGDQLVQATGIPGAIFCH
                     KGLFLSVWDSQESCEEALNLVLKQQRLV"
     misc_feature    complement(439397..440248)
                     /locus_tag="CTDLC_0386"
                     /note="Uncharacterized conserved protein related to MYG1
                     family [Function unknown]; Region: COG4286"
                     /db_xref="CDD:226736"
     gene            440535..442610
                     /locus_tag="CTDLC_0387"
                     /db_xref="GeneID:12387875"
     CDS             440535..442610
                     /locus_tag="CTDLC_0387"
                     /codon_start=1
                     /transl_table=11
                     /product="Transporter"
                     /protein_id="YP_005812318.1"
                     /db_xref="GI:385244474"
                     /db_xref="GeneID:12387875"
                     /translation="MTLFHSHHDAVSPDSYLCSSLQLVGTGVYEGEIEIQNIPSYFLG
                     FQLPSHCIHLNLKSSLAQLGIDASLLHCELSKNQHRAHIHAQFTGHGPIAESMLALLQ
                     PGDRVAKLFAADDRRLVRSPDYLESMLKNTDKAGHPLLCFGKKLEHLISFDVVDDRLV
                     VSLPTLPGVVRYDSDIYGLLPLIQKSLSNPKLSIRHFLALYQQIVEGQHVSCGNHILL
                     IKTEPLHIRTVFARVVNQLLPQGLSHTSANILEPTTRESGDIFEFFGNPSAQIERIPL
                     EFFTIEPYKEHSYFCNRDLLQTILQSESEIKKIFETAPKEPVKAATYLSKGSEISSLH
                     TDSWLTGSAAAYQYSEQADKNEYTHAQPCYPFLEAMEMGLINSEGALLTRYFPSASLK
                     GMLISYHVRHYLKQIYFQVPSYTHGNYFSHNDRGLLLDLQQADIDVFWADEESGRVLQ
                     YTKRRDKNSGMFVIKNRVEEFRSAYFIAIYGSRLLENNFSAQLHTLLAGLQQAAHTLG
                     IPGFSKPTPLAVITGGGTGVMATGNRVAKELGILSCGTVLDLEASPAQIDQPTNEFLD
                     AKMTYRLPQLIERQEHFYADLPILVVGGVGTDFELYLELVYLKTGAKPPTPIFLIGPI
                     EYWKEKVAHAYEINLKAGTIRGSEWISNCLYCITSPEAGIAVFEQFLAGELPIGYDYP
                     PAPDGLVIV"
     misc_feature    441939..442574
                     /locus_tag="CTDLC_0387"
                     /note="Predicted Rossmann fold nucleotide-binding protein
                     [General function prediction only]; Region: COG1611"
                     /db_xref="CDD:224527"
     gene            complement(442624..442971)
                     /locus_tag="CTDLC_0388"
                     /db_xref="GeneID:12387876"
     CDS             complement(442624..442971)
                     /locus_tag="CTDLC_0388"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812319.1"
                     /db_xref="GI:385244475"
                     /db_xref="GeneID:12387876"
                     /translation="MRFLLKLLSKEKENILLEGFWVLEVRVTTKARENRVVCLEDGIL
                     RVRVTEVPEKGKANDAVVALLANFLSIPKSDVTLIAGEASRRKKVLLPRSIKAFLLEQ
                     FPSESSSTTGKKS"
     misc_feature    complement(442639..442926)
                     /locus_tag="CTDLC_0388"
                     /note="hypothetical protein; Validated; Region: PRK00647"
                     /db_xref="CDD:100624"
     gene            443153..444379
                     /locus_tag="CTDLC_0389"
                     /db_xref="GeneID:12387877"
     CDS             443153..444379
                     /locus_tag="CTDLC_0389"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812320.1"
                     /db_xref="GI:385244476"
                     /db_xref="GeneID:12387877"
                     /translation="MMKPLRFGYFFCAIYFTLLQAAFAKEPNSCPDCQNNWKEVTHTD
                     QLPENIIHADDACYHSGYVQALIDMHFLDSCCQVIVENQTAYLFSLPTDDVTRNAIIN
                     LIKDLPFIHSVEICQASYQTCHHQGPHGKTSLPEQRSFCTKVCGKEAIWLPQNTILFS
                     PLVADPRQATNSAGIRFNDEVLGKRVGSATFGGDFIFLRLFDISRFHGDMDIGLQGAV
                     FSVFDLDHPEACMVNSDFFVAALCNFAVNKWSYRFRLWHLSSHLGDEFILANQLPPKK
                     RYNRSDEAVDFFASFRYTPQIRVYGGIGYIISRDLTFPEDPLYFEGGIELRPFGLRED
                     NLHAQPVFAMHFRFWEEHDFSIDQTYIVGMEWSKFQDVGRKVRAVLEYHQGFSHEGQF
                     VREECDYYGFRLSYGF"
     misc_feature    443360..444376
                     /locus_tag="CTDLC_0389"
                     /note="Protein of unknown function (DUF1207); Region:
                     DUF1207; pfam06727"
                     /db_xref="CDD:148370"
     gene            444451..445671
                     /gene="aspC"
                     /locus_tag="CTDLC_0390"
                     /db_xref="GeneID:12387878"
     CDS             444451..445671
                     /gene="aspC"
                     /locus_tag="CTDLC_0390"
                     /EC_number="2.6.1.1"
                     /codon_start=1
                     /transl_table=11
                     /product="Aspartate aminotransferase"
                     /protein_id="YP_005812321.1"
                     /db_xref="GI:385244477"
                     /db_xref="GeneID:12387878"
                     /translation="MTLPCFMDFRWFMKRNPHFVSLTKNYLFADLQKRVAQFRLENPQ
                     HTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYR
                     GFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPC
                     LQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYS
                     TFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQ
                     DWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLATGFEVFGG
                     EHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDIL
                     AACERLQMAPALQS"
     misc_feature    444526..445647
                     /gene="aspC"
                     /locus_tag="CTDLC_0390"
                     /note="Aspartate/tyrosine/aromatic aminotransferase [Amino
                     acid transport and metabolism]; Region: COG0436"
                     /db_xref="CDD:223513"
     misc_feature    444592..445647
                     /gene="aspC"
                     /locus_tag="CTDLC_0390"
                     /note="Aspartate aminotransferase family. This family
                     belongs to pyridoxal phosphate (PLP)-dependent aspartate
                     aminotransferase superfamily (fold I). Pyridoxal phosphate
                     combines with an alpha-amino acid to form a compound
                     called a Schiff base or aldimine...; Region: AAT_like;
                     cd00609"
                     /db_xref="CDD:99734"
     misc_feature    order(444793..444801,444868..444870,445006..445008,
                     445099..445101,445183..445185,445189..445194,
                     445216..445218)
                     /gene="aspC"
                     /locus_tag="CTDLC_0390"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:99734"
     misc_feature    order(444802..444804,444898..444900,445078..445080,
                     445210..445218,445327..445329,445336..445338)
                     /gene="aspC"
                     /locus_tag="CTDLC_0390"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99734"
     misc_feature    445192..445194
                     /gene="aspC"
                     /locus_tag="CTDLC_0390"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99734"
     gene            445679..446686
                     /locus_tag="CTDLC_0391"
                     /db_xref="GeneID:12387879"
     CDS             445679..446686
                     /locus_tag="CTDLC_0391"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="YP_005812322.1"
                     /db_xref="GI:385244478"
                     /db_xref="GeneID:12387879"
                     /translation="MLLRKFCGYLFCSSLVCSFISVIVVSFRSEPITPSVAIFSSFSH
                     NSLSECIESCQKELTSFGNMPTISLFNSEDNVVKARKIARTLHKDPNVVMIITLGPIA
                     TKVMSQIETQKPIIYAVVPAGEALRFPKEQVNIYGVNDSVDTNQCCFAIHAVTNNANS
                     LVYLQPHEPFPSSLQEEITNKLRASGIKVTELPISAANMSSRIQFIAENRPSAVFFPL
                     SSLSEKMGTTLIKSILKENIPLITDDSSLVMEGACAACSVDYKLSGKQIACIVRYLLS
                     KKNNEEHLNQISAEPILSKITFNEEIIRFLGLPFNVAPAHQFISFHSADNTGLVTLQI
                     P"
     misc_feature    445679..446617
                     /locus_tag="CTDLC_0391"
                     /note="ABC-type uncharacterized transport system,
                     periplasmic component [General function prediction only];
                     Region: COG2984"
                     /db_xref="CDD:225531"
     gene            complement(446692..447825)
                     /gene="yprS"
                     /locus_tag="CTDLC_0392"
                     /db_xref="GeneID:12387880"
     CDS             complement(446692..447825)
                     /gene="yprS"
                     /locus_tag="CTDLC_0392"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812323.1"
                     /db_xref="GI:385244479"
                     /db_xref="GeneID:12387880"
                     /translation="MSSIQGTSGSSPERLPNSREDEGMNPEGVTPSGQTISFSAVGKS
                     TSAEDIQQLALPIIQSDAMASSPSVGGAVGEVEVAEIIADVMEKNDANVQKLDEDMEA
                     LLQAISSSEEQLESPGVRNKSALKGTNRSNSHREEIARNQRLRSLSVRHGLAYNRHSL
                     RRLARGIRHHAGLVTASFATLHKTLRAVPQEDLKSILGKDSDTVLARLHKLGLEVNEK
                     GEWRLRANGEVGSINQSICNLARSAERLHDDGPLSINDQASEEEVTACCSAGRRACQF
                     LQEHLMGALRAIYYQILRFFHWISRRVEVEPEDTDYYMRPGIFINPYASYLSSSPSVE
                     DPRSLRDRLRDGGALSGEDTLFSMPQDESLDSESVSDDDRGFQ"
     gene            448026..449771
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /db_xref="GeneID:12387881"
     CDS             448026..449771
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /EC_number="6.1.1.15"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl-tRNA synthetase"
                     /protein_id="YP_005812324.1"
                     /db_xref="GI:385244480"
                     /db_xref="GeneID:12387881"
                     /translation="MRMSLLFYRTSKNANKEASVLSYELLQKAGYLFKTSKGIYSYTP
                     LFQRVILKMTEIIREELNAIGGQEVCLPLLQPAELWEKTGRWKAFLSEKLLYVLKDRE
                     NKAMCLAPTHEEVVSEFVAQWLTGREQLPIHLYQIGTKFRDEIRPRFGLMRAKEFLME
                     DSYTFSDSPEQMEEQYAKLRLAYQRIFDRLNLKYVIVAADGGKIGKGKSEEFHVLCSL
                     GEDTICVSGSYGANVEAAQAIPPSYVYDSNLLPVEEVATPNIRTIEDLEVFFNTPKHK
                     ILKTLVVKTCQKDSEKFFAICIRGDRQINLTKVASFLQVDDCELASEEEILKHLHVEK
                     GFIGPLYCPIPCYADETTRPMTNFICANNQKDVHCKHVNWGRDIPLPAFGDFLLAEAG
                     DLCPQNGGAPYEIFQGVEVAHIFNLGTRYTESFSVGFQDKNGDKQLCWMGTYGIGVGR
                     TLAACIEQLADNKGLVWPLAVAPFSITILYNGGDTEGEATALQLYQSLNTEGFEPLLD
                     DRNERLGFKLKDSDLLGIPYKLIIGKSFQSTGLLEIESRSGEKCNVSPENLLDWCSKN
                     LPCHTRKIPPLREQN"
     misc_feature    448026..449726
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /note="prolyl-tRNA synthetase; Provisional; Region:
                     PRK09194"
                     /db_xref="CDD:236405"
     misc_feature    448074..449399
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /note="Prolyl-tRNA synthetase (ProRS) class II core
                     catalytic domain. ProRS is a homodimer. It is responsible
                     for the attachment of proline to the 3' OH group of ribose
                     of the appropriate tRNA. This domain is primarily
                     responsible for ATP-dependent...; Region: ProRS_core_prok;
                     cd00779"
                     /db_xref="CDD:238402"
     misc_feature    order(448122..448127,448146..448157,448176..448178,
                     448227..448235,448239..448244,448308..448310,
                     448314..448328,448380..448382,448440..448442,
                     448491..448493)
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238402"
     misc_feature    448221..448244
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /note="motif 1; other site"
                     /db_xref="CDD:238402"
     misc_feature    order(448356..448358,448362..448364,448449..448451,
                     448455..448457,448479..448487,448494..448496,
                     448500..448502,448506..448508,449247..449249,
                     449253..449258,449262..449264,449352..449360,
                     449364..449366,449373..449375)
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /note="active site"
                     /db_xref="CDD:238402"
     misc_feature    448446..448457
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /note="motif 2; other site"
                     /db_xref="CDD:238402"
     misc_feature    448701..449183
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /note="INS is an amino acid-editing domain inserted (INS)
                     into the bacterial class II prolyl-tRNA synthetase (ProRS)
                     however, this CD is not exclusively bacterial. It is also
                     found at the N-terminus of the eukaryotic/archaea-like
                     ProRS's of yeasts and...; Region: ProRS-INS; cd04334"
                     /db_xref="CDD:239826"
     misc_feature    order(448860..448862,449028..449033,449106..449108)
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /note="putative deacylase active site [active]"
                     /db_xref="CDD:239826"
     misc_feature    449358..449375
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /note="motif 3; other site"
                     /db_xref="CDD:238402"
     misc_feature    449442..449714
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /note="ProRS Prolyl-anticodon binding domain, short
                     version found predominantly in bacteria. ProRS belongs to
                     class II aminoacyl-tRNA synthetases (aaRS). This alignment
                     contains the anticodon binding domain, which is
                     responsible for specificity in tRNA-binding; Region:
                     ProRS_anticodon_short; cd00861"
                     /db_xref="CDD:238438"
     misc_feature    order(449466..449468,449580..449582,449598..449600,
                     449622..449624,449652..449654,449658..449660)
                     /gene="proS"
                     /locus_tag="CTDLC_0393"
                     /note="anticodon binding site; other site"
                     /db_xref="CDD:238438"
     gene            449840..451018
                     /gene="hrcA"
                     /locus_tag="CTDLC_0394"
                     /db_xref="GeneID:12387882"
     CDS             449840..451018
                     /gene="hrcA"
                     /locus_tag="CTDLC_0394"
                     /note="protein HrcA"
                     /codon_start=1
                     /transl_table=11
                     /product="Heat-inducible transcription repressor"
                     /protein_id="YP_005812325.1"
                     /db_xref="GI:385244481"
                     /db_xref="GeneID:12387882"
                     /translation="MENRIEMSQLRASKKDSKISYVLLMATKLYLEGGQPVGSKLLKE
                     TYCSDLSSATIRNYFAQLETDGFLRKNHISGGRIPTDLAFRYYADHNAPFLEQEEILA
                     IQQKLTELPEYSKNIVKDLQKASEVLSDILQLPVCFSSPRFESDSVINIQLVAIDDQR
                     VVFVLSTEFGQVFTDVLWLPEQLPENSLKRIEGFLQNYLRKQPSDSLLSQKEEDLGMV
                     LYNEVVVRYLTRYCHFSEEDLYQTGLSRLLKYETFKDPETLAQGLAFFENRKHMCQLL
                     NTYLHKETPTAFIGRELTDIVGNTDPSCAVITIPYYMDRTPLGAFGVLGPMNLPYQQV
                     FGTLSLFTERLKVILTQSFYKFKLSFRRPCPTDPRCSQRPAELTRSSSIKLLPAKELS
                     "
     misc_feature    449873..450904
                     /gene="hrcA"
                     /locus_tag="CTDLC_0394"
                     /note="Transcriptional regulator of heat shock gene
                     [Transcription]; Region: HrcA; COG1420"
                     /db_xref="CDD:224338"
     misc_feature    450188..450844
                     /gene="hrcA"
                     /locus_tag="CTDLC_0394"
                     /note="HrcA protein C terminal domain; Region: HrcA;
                     pfam01628"
                     /db_xref="CDD:250757"
     gene            451015..451587
                     /gene="grpE"
                     /locus_tag="CTDLC_0395"
                     /db_xref="GeneID:12387883"
     CDS             451015..451587
                     /gene="grpE"
                     /locus_tag="CTDLC_0395"
                     /codon_start=1
                     /transl_table=11
                     /product="Grpe"
                     /protein_id="YP_005812326.1"
                     /db_xref="GI:385244482"
                     /db_xref="GeneID:12387883"
                     /translation="MTETPNTSSEEIQTSEPSPDNELQVLQQENANLKAELQEQNDRY
                     LMALAEAENSRKRLQKERTEMMQYAVENALMDFLPPIESMEKALGFASQTSEEVKNWA
                     IGFQMILQQFKQIFEEKGVVEYSSKGELFNPYLHEAVEIEETTTIPEGTILEEFTKGY
                     KIGDRPIRVAKVKVAKLPAKGNSDSNEEKE"
     misc_feature    451123..451536
                     /gene="grpE"
                     /locus_tag="CTDLC_0395"
                     /note="GrpE is the adenine nucleotide exchange factor of
                     DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
                     ATPase domain of Hsp70 catalyzing the dissociation of ADP,
                     which enables rebinding of ATP, one step in the Hsp70
                     reaction cycle in protein folding; Region: GrpE; cd00446"
                     /db_xref="CDD:238252"
     misc_feature    order(451129..451134,451141..451146,451153..451155,
                     451165..451167,451174..451179,451219..451221,
                     451231..451233,451240..451242,451261..451263,
                     451273..451275,451327..451329,451336..451338,
                     451369..451371)
                     /gene="grpE"
                     /locus_tag="CTDLC_0395"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:238252"
     misc_feature    order(451180..451182,451411..451413,451420..451434,
                     451480..451482,451507..451509,451519..451521)
                     /gene="grpE"
                     /locus_tag="CTDLC_0395"
                     /note="hsp70 (ATPase domain) interactions [polypeptide
                     binding]; other site"
                     /db_xref="CDD:238252"
     gene            451604..453595
                     /gene="dnaK"
                     /locus_tag="CTDLC_0396"
                     /db_xref="GeneID:12387884"
     CDS             451604..453595
                     /gene="dnaK"
                     /locus_tag="CTDLC_0396"
                     /note="DnaK protein"
                     /codon_start=1
                     /transl_table=11
                     /product="Chaperone protein"
                     /protein_id="YP_005812327.1"
                     /db_xref="GI:385244483"
                     /db_xref="GeneID:12387884"
                     /translation="MFNMSEKRKSNKIIGIDLGTTNSCVSVMEGGQPKVIASSEGTRT
                     TPSIVAFKGGETLVGIPAKRQAVTNPEKTLASTKRFIGRKFSEVESEIKTVPYKVAPN
                     SKGDAVFDVEQKLYTPEEIGAQILMKMKETAEAYLGETVTEAVITVPAYFNDSQRAST
                     KDAGRIAGLDVKRIIPEPTAAALAYGIDKEGDKKIAVFDLGGGTFDISILEIGDGVFE
                     VLSTNGDTHLGGDDFDGVIINWMLDEFKKQEGIDLSKDNMALQRLKDAAEKAKIELSG
                     VSSTEINQPFITIDANGPKHLALTLTRAQFEHLASSLIERTKQPCAQALKDAKLSASD
                     IDDVLLVGGMSRMPAVQAVVKEIFGKEPNKGVNPDEVVAIGAAIQGGVLGGEVKDVLL
                     LDVIPLSLGIETLGGVMTPLVERNTTIPTQKKQIFSTAADNQPAVTIVVLQGERPMAK
                     DNKEIGRFDLTDIPPAPRGHPQIEVTFDIDANGILHVSAKDAASGREQKIRIEASSGL
                     KEDEIQQMIRDAELHKEEDKQRKEASDVKNEADGMIFRAEKAVKDYHDKIPAELVKEI
                     EEHIEKVRQAIKEDASTTAIKAASDELSTHMQKIGEAMQAQSASAAASSAANAQGGPN
                     INSEDLKKHSFSTRPPAGGSASSTDNIEDADVEIVDKPE"
     misc_feature    451634..453586
                     /gene="dnaK"
                     /locus_tag="CTDLC_0396"
                     /note="molecular chaperone DnaK; Provisional; Region:
                     dnaK; PRK00290"
                     /db_xref="CDD:234715"
     misc_feature    451634..452752
                     /gene="dnaK"
                     /locus_tag="CTDLC_0396"
                     /note="Nucleotide-binding domain of human HSPA9 and
                     similar proteins; Region: HSPA9-Ssq1-like_NBD; cd10234"
                     /db_xref="CDD:212676"
     misc_feature    order(451658..451669,451835..451837,452132..452134,
                     452204..452209,452213..452215,452291..452293,
                     452405..452407,452414..452416,452426..452428,
                     452627..452635,452639..452641)
                     /gene="dnaK"
                     /locus_tag="CTDLC_0396"
                     /note="nucleotide binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:212676"
     misc_feature    order(451712..451714,451721..451723,451772..451774,
                     451784..451786,451793..451798,451802..451807,
                     452006..452017,452375..452377,452384..452389,
                     452396..452398,452450..452452,452456..452461)
                     /gene="dnaK"
                     /locus_tag="CTDLC_0396"
                     /note="NEF interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:212676"
     misc_feature    order(452063..452068,452072..452077,452120..452125,
                     452129..452131,452252..452263)
                     /gene="dnaK"
                     /locus_tag="CTDLC_0396"
                     /note="SBD interface [polypeptide binding]; other site"
                     /db_xref="CDD:212676"
     gene            453888..455972
                     /gene="vacB"
                     /locus_tag="CTDLC_0397"
                     /db_xref="GeneID:12387885"
     CDS             453888..455972
                     /gene="vacB"
                     /locus_tag="CTDLC_0397"
                     /EC_number="3.1.13.1"
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="YP_005812328.1"
                     /db_xref="GI:385244484"
                     /db_xref="GeneID:12387885"
                     /translation="MGKAKNKKKFLKNRKQVLVPGTLFVHSRKGFGFVSPDQPELYPF
                     DIFISASDLKGALDGDHVLVALPFSLRGGEKRKGVIHKVLSRGKTVLVGTIVSLINPT
                     LAMVYVNTIGPEHPLKAELLPKRTYKLGDRLLLKTPVWKENYPSREPPPLAMLEFIGN
                     ISNAKTDFPVIKAEFSITEEFPDAVVQEASQFLQKHVTQALHSRKDLRDLLCFTIDSS
                     SAKDFDDAVSLTYDHEGNYILGVHIADVSHYVTPNSALDREAAKRCNSIYFPGKVIPM
                     LPSALSDNLCSLKPNVDRLAVSVFMTFSKEGFLSDYRILRSVIRSKYRMTYDEVDEII
                     EKKQTHPISKTILKMAELSRIFSDIREQRGCTRLVLPSFTMSLDNLQEPVALIENKQT
                     AAHKLIEEFMLKANEVIAYHISHQGITMPFRTHEPPNEESLLVFQETAKAMGFTITQT
                     PAQEPDYQYLLQETTAGHPLEPILHSQFVRSMKTASYSTENKGHYGLCLDYYTHFTSP
                     IRRYVDLIVHRLLFHPLSVEEEHLEQIVRACSSQERIAAKAEGAFVNIKKARFLKKFI
                     EEQPATLYKAFIITASPEGISFVLPEFCHEGFIPAAKLPQAYVLQTKIGLEELPEHLR
                     PGAVISVQLASVTLLTQSIEWTLVEATTKAKAKRTSKKKKTESVTTKEKKKSPAKKKK
                     GATKTKKGSGKN"
     misc_feature    453939..455834
                     /gene="vacB"
                     /locus_tag="CTDLC_0397"
                     /note="Exoribonuclease R [Transcription]; Region: VacB;
                     COG0557"
                     /db_xref="CDD:223631"
     misc_feature    453948..454136
                     /gene="vacB"
                     /locus_tag="CTDLC_0397"
                     /note="Ribonuclease B OB domain; Region: OB_RNB;
                     pfam08206"
                     /db_xref="CDD:254660"
     misc_feature    454497..455462
                     /gene="vacB"
                     /locus_tag="CTDLC_0397"
                     /note="RNB domain; Region: RNB; pfam00773"
                     /db_xref="CDD:250123"
     gene            456228..456992
                     /locus_tag="CTDLC_0398"
                     /db_xref="GeneID:12387886"
     CDS             456228..456992
                     /locus_tag="CTDLC_0398"
                     /codon_start=1
                     /transl_table=11
                     /product="Zn binding protein"
                     /protein_id="YP_005812329.1"
                     /db_xref="GI:385244485"
                     /db_xref="GeneID:12387886"
                     /translation="MHDALQSILAIQELDIKMIRLMRVKKEHQNELAKIQALKTDIRR
                     KVEEKEQEMEKLKDQIKGGEKRIQEISDQINKLENQQAAVKKMDEFNALTQEMTAANK
                     ERRTLEHQLSDLMDKQAGSEDLLISLKESLSSTENSSSAIEEEIRENIRKINEEGRSL
                     LSQRTQLKETTDPELFSIYERLLNNKKDRVVVPIENRVCSGCHIALTPQHENLVRKQD
                     HLVFCEHCSRILYWQELQSPSAEGATTKRRRRRTAV"
     misc_feature    456228..456941
                     /locus_tag="CTDLC_0398"
                     /note="Zn-ribbon protein, possibly nucleic acid-binding
                     [General function prediction only]; Region: COG1579"
                     /db_xref="CDD:224495"
     misc_feature    456750..456917
                     /locus_tag="CTDLC_0398"
                     /note="Putative zinc ribbon domain; Region: DUF164;
                     pfam02591"
                     /db_xref="CDD:251399"
     gene            complement(457415..458410)
                     /gene="yrbH"
                     /locus_tag="CTDLC_0399"
                     /db_xref="GeneID:12387887"
     CDS             complement(457415..458410)
                     /gene="yrbH"
                     /locus_tag="CTDLC_0399"
                     /codon_start=1
                     /transl_table=11
                     /product="Carbohydrate isomerase, KpsF/GutQ family"
                     /protein_id="YP_005812330.1"
                     /db_xref="GI:385244486"
                     /db_xref="GeneID:12387887"
                     /translation="MKVMYVPGIAENLCLDIFHKQKQVISQYFASFHYDCVHQLTEKL
                     LCHQGSLFFSGIGKSGCIARKLVATMQSFGEKAFFLSGDLLHGDLGVVSPGDIVCLFS
                     NSGETREILEWIPHLKNRPVFLVGITAAPCSSLAAFSDFVIVLPKLEELDPFNLMPTT
                     STTCQLLFSDLLAMTLLRCRKISLSDYGSNHPSGQIGLKANGKVKDYLYPRTEVPFCS
                     PLTTVAESLPTLSSYGYGCVCVVNELFELLGIFTDGDLRRGLSEYGGDILAYPLQQIM
                     TRNPKVISEDSDVLLSLEMMESGNPVTVLPVVDAQQQRFIVGLLHMHALARAGLL"
     misc_feature    complement(457448..458266)
                     /gene="yrbH"
                     /locus_tag="CTDLC_0399"
                     /note="KpsF/GutQ family protein; Region: kpsF; TIGR00393"
                     /db_xref="CDD:129488"
     misc_feature    complement(457886..458266)
                     /gene="yrbH"
                     /locus_tag="CTDLC_0399"
                     /note="KpsF-like protein. KpsF is an arabinose-5-phosphate
                     isomerase which contains SIS (Sugar ISomerase) domains.
                     SIS domains are found in many phosphosugar isomerases and
                     phosphosugar binding proteins. KpsF catalyzes the
                     reversible reaction of ribulose...; Region: SIS_Kpsf;
                     cd05014"
                     /db_xref="CDD:240145"
     misc_feature    complement(order(458105..458107,458234..458236))
                     /gene="yrbH"
                     /locus_tag="CTDLC_0399"
                     /note="putative active site [active]"
                     /db_xref="CDD:240145"
     misc_feature    complement(457427..457777)
                     /gene="yrbH"
                     /locus_tag="CTDLC_0399"
                     /note="This cd contains two tandem repeats of the
                     cystathionine beta-synthase (CBS pair) domains associated
                     with KpsF/GutQ domains in the API [A5P (D-arabinose
                     5-phosphate) isomerase] protein.  These APIs catalyze the
                     conversion of the pentose pathway...; Region:
                     CBS_pair_KpsF_GutQ_assoc; cd04604"
                     /db_xref="CDD:239977"
     gene            complement(458433..459599)
                     /gene="sucB_2"
                     /locus_tag="CTDLC_0400"
                     /db_xref="GeneID:12387888"
     CDS             complement(458433..459599)
                     /gene="sucB_2"
                     /locus_tag="CTDLC_0400"
                     /EC_number="2.3.1.-"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoamide acyltransferase component (E2) of
                     branched-chain alpha-keto acid dehydrogenase complex"
                     /protein_id="YP_005812331.1"
                     /db_xref="GI:385244487"
                     /db_xref="GeneID:12387888"
                     /translation="MFEFRFPKIGETASGGIVVRWLKQVGDPVQKDEPLIEVSTDKIA
                     TELAPSQAGILEECLVQEGEEVFPGDILARLLETAAANTPVKSPVENPVREENHSVDR
                     EQKWFSPAVLGFAQREGLDLQELQKISGTGEGGRITRKDVEHYLSDKREPRDPICSKE
                     ENRIPLSPLRRAIASSLRQSSEEVPHASLVVDVDVTDLMNLISAERERFTAAHGVKLT
                     ITSFIIQCLAKSLEQFPLLNGSLDGDTIVLKKAINVGVAVNLNKEGVVVPVIHNCQDR
                     GLVSIAKVLADLSSRARSNKLDSSETKGGSVTVTNFGMTGALIGMPIIRYPEVAILGI
                     GTIQKRVVVRDDDSLAIRKMMCVTLTFDHRILDGIYGGEFLTALKNRLESVTMS"
     misc_feature    complement(458436..459599)
                     /gene="sucB_2"
                     /locus_tag="CTDLC_0400"
                     /note="branched-chain alpha-keto acid dehydrogenase
                     subunit E2; Reviewed; Region: PRK11856"
                     /db_xref="CDD:237001"
     misc_feature    complement(459375..459596)
                     /gene="sucB_2"
                     /locus_tag="CTDLC_0400"
                     /note="Lipoyl domain of the dihydrolipoyl acyltransferase
                     component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid
                     dehydrogenase multienzyme complexes, like pyruvate
                     dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH)
                     and branched-chain 2-oxo acid...; Region: lipoyl_domain;
                     cd06849"
                     /db_xref="CDD:133458"
     misc_feature    complement(order(459456..459458,459468..459485,
                     459504..459506))
                     /gene="sucB_2"
                     /locus_tag="CTDLC_0400"
                     /note="E3 interaction surface; other site"
                     /db_xref="CDD:133458"
     misc_feature    complement(459474..459476)
                     /gene="sucB_2"
                     /locus_tag="CTDLC_0400"
                     /note="lipoyl attachment site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:133458"
     misc_feature    complement(459168..459278)
                     /gene="sucB_2"
                     /locus_tag="CTDLC_0400"
                     /note="e3 binding domain; Region: E3_binding; pfam02817"
                     /db_xref="CDD:251550"
     misc_feature    complement(458451..459071)
                     /gene="sucB_2"
                     /locus_tag="CTDLC_0400"
                     /note="2-oxoacid dehydrogenases acyltransferase (catalytic
                     domain); Region: 2-oxoacid_dh; pfam00198"
                     /db_xref="CDD:249671"
     gene            complement(459845..461083)
                     /gene="gltT"
                     /locus_tag="CTDLC_0401"
                     /db_xref="GeneID:12387889"
     CDS             complement(459845..461083)
                     /gene="gltT"
                     /locus_tag="CTDLC_0401"
                     /codon_start=1
                     /transl_table=11
                     /product="Proton/sodium-glutamate symport protein"
                     /protein_id="YP_005812332.1"
                     /db_xref="GI:385244488"
                     /db_xref="GeneID:12387889"
                     /translation="MKLWMKIFIGLIIGVVSGLILEDKAVFVKPFGDIFLNLLSMVVY
                     PLVFCSMVLGIASISDMKKLGRIGLRSLGLYLATTSVAIGIGLAFALFFSPGKGCDLQ
                     GFNAVDLASSGSSGGMNFLATFAQVFPSNPLRSFVEGNILQIIIFALFTGIAMRLAGE
                     AARPVERFVHGCNEIMLRMVNMIMSFAPYGVAASMAWISGNHGLTVLLQLGKFLVVYY
                     LACICHAILIFGGLVRLGCRSSFSKFLSSMMDAISCAVSTASSSATLPVTMRCVSKNL
                     GVSSEVSGFVLPLGATVNMNGTAIFQGMAAVFIAQAYNCPLSLTSLLLLVVTATFSAV
                     GSAGVPGGGMITLGSVLTSVGLPIQGIAVLAGIDRLRDIIGTPMNILGDAVVALYIAD
                     GEGEFSSSNEGEEDILPQNG"
     misc_feature    complement(459896..461083)
                     /gene="gltT"
                     /locus_tag="CTDLC_0401"
                     /note="Na+/H+-dicarboxylate symporters [Energy production
                     and conversion]; Region: GltP; COG1301"
                     /db_xref="CDD:224220"
     gene            complement(461080..462339)
                     /gene="lpxK"
                     /locus_tag="CTDLC_0402"
                     /db_xref="GeneID:12387890"
     CDS             complement(461080..462339)
                     /gene="lpxK"
                     /locus_tag="CTDLC_0402"
                     /EC_number="2.7.1.130"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="YP_005812333.1"
                     /db_xref="GI:385244489"
                     /db_xref="GeneID:12387890"
                     /translation="MIFNVLYAILRDTLVWKATWVKRTKSLSQPFRVVIVFAGCSFRK
                     NLSRAPMRFSFFSGIRDLFRHLIISATSGALSDRLGWLWAVIARVFSGSVWLRHKIAK
                     SPHQVQATVVSVGNIVVGGTGKTPLVLWLAQALHERGLSCAVLSRGYKGKYSKKKAFT
                     IVNPALHTASCVGDEPLLLAKYLPSGTVRIQKDRKTLAEKSAGDFDVLLLDDGFQYNR
                     LHKDVEIVLVNGSDPFGGGSFFPKGRLRDFPERLAKADYVMINGRCSPSDQRELDRLH
                     PEEKIVIEPQISEIVWLNQSVNMPRDHWEGLGVGVFCGLGFPKGFLAMLRDAGIHVLG
                     TYLLPDHVGITKQELELFCKKIILRQGVGILCTEKDSVKIGALAEEISFPVGEVRMRF
                     SCVCNERRMVAMLDAIEAIQKNKRVTT"
     misc_feature    complement(461098..462105)
                     /gene="lpxK"
                     /locus_tag="CTDLC_0402"
                     /note="tetraacyldisaccharide 4'-kinase; Region: lpxK;
                     TIGR00682"
                     /db_xref="CDD:233090"
     gene            complement(462355..463164)
                     /gene="yjfH"
                     /locus_tag="CTDLC_0403"
                     /db_xref="GeneID:12387891"
     CDS             complement(462355..463164)
                     /gene="yjfH"
                     /locus_tag="CTDLC_0403"
                     /EC_number="2.1.1.-"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methyltransferase"
                     /protein_id="YP_005812334.1"
                     /db_xref="GI:385244490"
                     /db_xref="GeneID:12387891"
                     /translation="MEFIGKNNARVKSALALKRQRARNSTYFLLEGFREIHRALISGY
                     RCSHVFCGELIADKEIALDRELTSLGIEKLYCSKDILEKLSFKENPENFIAVFEKKEL
                     SCQEFLGLQRKNQAPFYLIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNV
                     IRSSLGTVFTMPVWQASLKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVFGS
                     EKDGLSPDWLNGSFCNIALPMLGKADSLNLSSSVAAVAYEVVRQRSIRNLL"
     misc_feature    complement(462373..463158)
                     /gene="yjfH"
                     /locus_tag="CTDLC_0403"
                     /note="rRNA methylases [Translation, ribosomal structure
                     and biogenesis]; Region: SpoU; COG0566"
                     /db_xref="CDD:223640"
     misc_feature    complement(462862..463080)
                     /gene="yjfH"
                     /locus_tag="CTDLC_0403"
                     /note="RNA 2'-O ribose methyltransferase substrate
                     binding; Region: SpoU_sub_bind; pfam08032"
                     /db_xref="CDD:254595"
     misc_feature    complement(462394..462816)
                     /gene="yjfH"
                     /locus_tag="CTDLC_0403"
                     /note="SpoU rRNA Methylase family; Region: SpoU_methylase;
                     pfam00588"
                     /db_xref="CDD:249983"
     gene            complement(463152..463979)
                     /locus_tag="CTDLC_0404"
                     /db_xref="GeneID:12387892"
     CDS             complement(463152..463979)
                     /locus_tag="CTDLC_0404"
                     /codon_start=1
                     /transl_table=11
                     /product="N6-adenine-specific DNA methylase"
                     /protein_id="YP_005812335.1"
                     /db_xref="GI:385244491"
                     /db_xref="GeneID:12387892"
                     /translation="MMDYELLDSGDGKKLERFKDVCLIRSSATAIWPKSSPSLWGQYS
                     AEFVRMGEQGQWRYRNRNLKEWWITIDSVSCLLKLTPFGHVGIFPEHAGFWKDLQPSV
                     AKPSCRVLNLFAYTGASSIFCAQQGATVYHVDASKAAVKWAQKNVEGNAFQDKRIFWI
                     IEDVFSFLKKEIRRGKTYDVILLDPPTYGRGPDGETFKIDRDFFPLLELCSQLLSSSF
                     SHMLITSHTPGHTPEFLHCLARRALLMLPLQGWRLGENFCGEGNQRLPSGVFAQWSL"
     misc_feature    complement(463158..>463979)
                     /locus_tag="CTDLC_0404"
                     /note="Predicted SAM-dependent methyltransferases [General
                     function prediction only]; Region: COG1092"
                     /db_xref="CDD:224017"
     misc_feature    complement(463338..463658)
                     /locus_tag="CTDLC_0404"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    complement(order(463428..463430,463488..463496,
                     463575..463580,463626..463646))
                     /locus_tag="CTDLC_0404"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     gene            complement(463976..464581)
                     /gene="ribC"
                     /locus_tag="CTDLC_0405"
                     /db_xref="GeneID:12387893"
     CDS             complement(463976..464581)
                     /gene="ribC"
                     /locus_tag="CTDLC_0405"
                     /EC_number="2.5.1.9"
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase subunit alpha"
                     /protein_id="YP_005812336.1"
                     /db_xref="GI:385244492"
                     /db_xref="GeneID:12387893"
                     /translation="MSMFSGIIQEVARVDLIHHLRDSMEIGVFARKLIDVVPGSSFSV
                     DGICLTLVKRQYELLFFDVTEETMAWTTIKDYTVGTMVNLERSVRLGDEIGGHFVSGH
                     VCGIGTIIAIEKSYMFFKAPANLVPYILEKGFIAIDGISLTIARVKGDIFSVSLIPET
                     RARTSLGYKQVGAHVNMEPDMMTKMQVDTIMRFHAEKEISK"
     misc_feature    complement(463979..464575)
                     /gene="ribC"
                     /locus_tag="CTDLC_0405"
                     /note="riboflavin synthase subunit alpha; Provisional;
                     Region: PRK13020"
                     /db_xref="CDD:183846"
     misc_feature    complement(464324..464569)
                     /gene="ribC"
                     /locus_tag="CTDLC_0405"
                     /note="Lumazine binding domain; Region: Lum_binding;
                     pfam00677"
                     /db_xref="CDD:250049"
     misc_feature    complement(464042..464284)
                     /gene="ribC"
                     /locus_tag="CTDLC_0405"
                     /note="Lumazine binding domain; Region: Lum_binding;
                     pfam00677"
                     /db_xref="CDD:250049"
     gene            464968..465432
                     /gene="nrdR"
                     /locus_tag="CTDLC_0406"
                     /db_xref="GeneID:12387894"
     CDS             464968..465432
                     /gene="nrdR"
                     /locus_tag="CTDLC_0406"
                     /codon_start=1
                     /transl_table=11
                     /product="Putative regulatory protein"
                     /protein_id="YP_005812337.1"
                     /db_xref="GI:385244493"
                     /db_xref="GeneID:12387894"
                     /translation="MLCPFCNHGELKVIDSRNAPESNAIKRRRECLRCSQRFTTFETV
                     ELTVQVLKRDGRYENFQESKLVNGLKAASSHTRIGQEQVQAIASNIKQDLLGKQNREI
                     STKEIGELVMKYLKKADMIAYIRFACVYRRFKDVGELMEVLLSATPDGEKQT"
     misc_feature    464968..465429
                     /gene="nrdR"
                     /locus_tag="CTDLC_0406"
                     /note="Predicted transcriptional regulator, consists of a
                     Zn-ribbon and ATP-cone domains [Transcription]; Region:
                     COG1327"
                     /db_xref="CDD:224246"
     misc_feature    465112..465375
                     /gene="nrdR"
                     /locus_tag="CTDLC_0406"
                     /note="ATP cone domain; Region: ATP-cone; pfam03477"
                     /db_xref="CDD:251987"
     gene            465413..465820
                     /gene="dksA"
                     /locus_tag="CTDLC_0407"
                     /db_xref="GeneID:12387895"
     CDS             465413..465820
                     /gene="dksA"
                     /locus_tag="CTDLC_0407"
                     /codon_start=1
                     /transl_table=11
                     /product="DnaK suppressor protein"
                     /protein_id="YP_005812338.1"
                     /db_xref="GI:385244494"
                     /db_xref="GeneID:12387895"
                     /translation="MVKNRHEKENCMPLTDEEIANFKTRLLEMKAKLSHTLEGNAQEV
                     KKPNEATGYSQHQADQGTDTFDRTISLEVTTKEYKLLRQIDRALEKIEEASYGICDVS
                     GEEIPLARLMAIPYATMTVKSQEKFEKGLLSGN"
     misc_feature    465452..465802
                     /gene="dksA"
                     /locus_tag="CTDLC_0407"
                     /note="DnaK suppressor protein [Signal transduction
                     mechanisms]; Region: DksA; COG1734"
                     /db_xref="CDD:224648"
     gene            465826..466329
                     /gene="lspA"
                     /locus_tag="CTDLC_0408"
                     /db_xref="GeneID:12387896"
     CDS             465826..466329
                     /gene="lspA"
                     /locus_tag="CTDLC_0408"
                     /EC_number="3.4.23.36"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="YP_005812339.1"
                     /db_xref="GI:385244495"
                     /db_xref="GeneID:12387896"
                     /translation="MPTRSLPTFLTLLLLASIDWVSKLVVLLKSCQLSPHSSAFLYSY
                     VWGHFSFLIIPSFNEGAAFGLFTQYKIPLLIFRVCVILGLALFLRIKYKSLHRRTRVA
                     LTLILAGALGNVGDILLYGKVVDFLSLSYYSWRFPSFNLADAFISIGTLLLIGHLYFT
                     KESKKYF"
     misc_feature    465877..466320
                     /gene="lspA"
                     /locus_tag="CTDLC_0408"
                     /note="Lipoprotein signal peptidase [Cell envelope
                     biogenesis, outer membrane / Intracellular trafficking and
                     secretion]; Region: LspA; COG0597"
                     /db_xref="CDD:223670"
     gene            466431..467792
                     /locus_tag="CTDLC_0409"
                     /db_xref="GeneID:12387897"
     CDS             466431..467792
                     /locus_tag="CTDLC_0409"
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-linked D-alanine glycine permease"
                     /protein_id="YP_005812340.1"
                     /db_xref="GI:385244496"
                     /db_xref="GeneID:12387897"
                     /translation="MSAFLSFLTAFDDFIWSYIAFVLILLLGVLFTCKSKFAQFTQLP
                     AFFKLFYHFSKEASSKKENQKKGVHPLKVFFASAGGNIGIGNVVGIVTAASVGGPGAL
                     FWVWIAGILGSIVKYSEVYLGIKFRQSDANNVYHGGPMFFLDKAYRTRIVSVIVAVLL
                     CIYGVEIYQFSIIANTLASCWDVPKLMAIASLLFLVMYAVQGGLQRIGKICSLVLPFF
                     MLVYCGMAFYILIQEIHTLPALFSSIFRSAFTGHGAIGGFAGCTVASTIRQGLSRAAY
                     SGDIGIGFDSIIQSETSATNPQTQAQLSIVGVIVDNLVCTLSLLIVLASGVWHRAGLE
                     GSEIVEQALSFYFPYIRVFLPAFLFATGYTTIISYFLVGKKCANFICGNKGSKFYTVY
                     GIIALPAFCFLPQDTALLVMSVSGALLLCLNLLGVFLMRKELIFPKKEAETLEVSEST
                     LSS"
     misc_feature    466476..467753
                     /locus_tag="CTDLC_0409"
                     /note="amino acid carrier protein; Region: agcS;
                     TIGR00835"
                     /db_xref="CDD:233144"
     gene            468007..469284
                     /gene="pcnB_1"
                     /locus_tag="CTDLC_0410"
                     /db_xref="GeneID:12387898"
     CDS             468007..469284
                     /gene="pcnB_1"
                     /locus_tag="CTDLC_0410"
                     /EC_number="2.7.7.19"
                     /EC_number="2.7.7.72"
                     /note="tRNA-nucleotidyltransferase"
                     /codon_start=1
                     /transl_table=11
                     /product="Poly(A) polymerase"
                     /protein_id="YP_005812341.1"
                     /db_xref="GI:385244497"
                     /db_xref="GeneID:12387898"
                     /translation="MMACNQELLSPRGLDLLSKNSHSNLTPTIFYPSDHNIDLQSFST
                     HALSVVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNCILVGK
                     RFRLAHIRFPNQIIEVATFRSGSNEEDSLITKDNLWGSAEEDVLRRDFTINGLFYDPS
                     AEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEAL
                     QESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMAKAFSLSKTL
                     QDQTFACLTALDTKIQKRSFCSERHFLLAILLFPIVNFNVRYKYSQYPTMTIQSIFDY
                     IRNFLTEFFADSFTSCSKKNFILTTLLLQMQYRLTPLNAMKKEKKSFFNRRLLRHAYF
                     REALYLLEIRSKVYPKVEATYGEWLKHYELASE"
     misc_feature    468091..469281
                     /gene="pcnB_1"
                     /locus_tag="CTDLC_0410"
                     /note="poly(A) polymerase; Region: pcnB; TIGR01942"
                     /db_xref="CDD:130997"
     misc_feature    468142..468534
                     /gene="pcnB_1"
                     /locus_tag="CTDLC_0410"
                     /note="Nucleotidyltransferase (NT) domain of ClassII
                     CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398"
                     /db_xref="CDD:143388"
     misc_feature    order(468196..468201,468208..468213,468238..468240,
                     468244..468246,468316..468318,468355..468357,
                     468370..468372,468445..468456,468463..468465)
                     /gene="pcnB_1"
                     /locus_tag="CTDLC_0410"
                     /note="active site"
                     /db_xref="CDD:143388"
     misc_feature    order(468196..468201,468208..468210,468238..468240,
                     468244..468246,468445..468453,468463..468465)
                     /gene="pcnB_1"
                     /locus_tag="CTDLC_0410"
                     /note="NTP binding site [chemical binding]; other site"
                     /db_xref="CDD:143388"
     misc_feature    order(468238..468240,468244..468246,468355..468357)
                     /gene="pcnB_1"
                     /locus_tag="CTDLC_0410"
                     /note="metal binding triad [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:143388"
     misc_feature    468628..468816
                     /gene="pcnB_1"
                     /locus_tag="CTDLC_0410"
                     /note="Probable RNA and SrmB- binding site of polymerase
                     A; Region: PolyA_pol_RNAbd; pfam12627"
                     /db_xref="CDD:257174"
     gene            469345..471168
                     /gene="lpxB"
                     /locus_tag="CTDLC_0411"
                     /db_xref="GeneID:12387899"
     CDS             469345..471168
                     /gene="lpxB"
                     /locus_tag="CTDLC_0411"
                     /EC_number="2.4.1.182"
                     /codon_start=1
                     /transl_table=11
                     /product="Lipid-A-disaccharide synthase"
                     /protein_id="YP_005812342.1"
                     /db_xref="GI:385244498"
                     /db_xref="GeneID:12387899"
                     /translation="MFPQKITLWLYPLGLFANLFFGTAFCVQWSLTRKKGYSVVPKIF
                     WYLSGTGAVFMICHGFIQSQYPIALLHSFNLIIYFRNLNIASLNPLPVSKIASLLVSV
                     ATAITVSFAIGTRYLPHMTWMASPNILHLNLPEASLSWQLIGCIGLTIFSLRFFIQWF
                     YLEYKNQSALPAPFWKASLLGGSICLLYFLRTGDLVNVLCYGCGLFPSLANLRIASRE
                     AFRKPFSNSCFISAGEHSGDTLGGNLLKEMHAKYPDIHCFGVGGPQMRAQNFHALFAM
                     EKFQVSGFWEVLLALPKLWYRYQLLYRNILKTNPRTVICIDFPDFHFLLIKKLRSRGY
                     KGKIVHYVCPSIWAWRPSRKTVLEKYLDLLLLILPFEQNLFKDSALRTVYLGHPLSET
                     IKSFSPNLNWKDQLHLPTDKPFIAAFPGSRRSDILRNLTIQVQAFQASSLASTHHLLV
                     SSANPEYDHLILEVLQQNRCLHSHIVPSQFRYELMRECDFALAKCGTIVLETALNLTP
                     TIVTCQLRPLDTFLAKYIFNIILPAYSLPNIILGRTIFPEFIGGKKDFQYEDVAAALN
                     ILKTSQAQEKQKDSCRDVYQAINESASSMKECLSLIFETAS"
     misc_feature    469345..471165
                     /gene="lpxB"
                     /locus_tag="CTDLC_0411"
                     /note="lipid-A-disaccharide synthase; Reviewed; Region:
                     lpxB; PRK01021"
                     /db_xref="CDD:167141"
     misc_feature    469381..469596
                     /gene="lpxB"
                     /locus_tag="CTDLC_0411"
                     /note="Lipid A Biosynthesis N-terminal domain; Region:
                     LAB_N; pfam07578"
                     /db_xref="CDD:148926"
     misc_feature    469687..470025
                     /gene="lpxB"
                     /locus_tag="CTDLC_0411"
                     /note="Predicted membrane protein [Function unknown];
                     Region: COG3952"
                     /db_xref="CDD:226461"
     misc_feature    470029..470994
                     /gene="lpxB"
                     /locus_tag="CTDLC_0411"
                     /note="ipid-A-disaccharide synthase; Provisional; Region:
                     PRK14089"
                     /db_xref="CDD:237606"
     gene            471254..474202
                     /gene="pmpA"
                     /locus_tag="CTDLC_0412"
                     /db_xref="GeneID:12387900"
     CDS             471254..474202
                     /gene="pmpA"
                     /locus_tag="CTDLC_0412"
                     /codon_start=1
                     /transl_table=11
                     /product="Polymorphic outer membrane protein"
                     /protein_id="YP_005812343.1"
                     /db_xref="GI:385244499"
                     /db_xref="GeneID:12387900"
                     /translation="MFITKELMNRVIEIHAHYDQRQLSQSPNTNFLVHHPYLTLIPKF
                     LLGALIVYAPYSFAEMELAISGHKQGKDRDTFTMISSCPEGTNYIINRKLILSDFSLL
                     NKVSSGGAFRNLAGKISFLGKNSSASIHFKHININGFGAGVFSESSIEFTDLRKLVAF
                     GSESTGGIFTAKEDISFKNNHHIAFRNNITKGNGGVIQLQGDMKGSVSFVDQRGAIIF
                     TNNQAVTSSSMKHSGRGGAISGDFAGSRILFLNNQQITFEGNSAVHGGAIYNKNGLVE
                     FLGNAGPLAFKENTTIANGGAIYTSNFKANQQTSPILFSQNHANKKGGAIYAQYVNLE
                     QNQDTIRFEKNTAKEGGGAITSSQCSITAHNTIIFSDNAAGDLGGGAILLEGKKPSLT
                     LIAHSGNIAFSGNTMLHITKKASLDRHNSILIKEAPYKIQLAANKNHSIHFFDPVMAL
                     SASSSPIQINAPEYETPFFSPKGMIVFSGANLLDDAREDVANRTSIFNQPVHLYNGTL
                     SIENGAHLIVQSFKQTGGRISLSPGSSLALYTMNSFFHGNISSKEPLEINGLSFGVDI
                     SPSNLQAEIRAGNAPLRLSGSPSIHDPEGLFYENRDTAASPYQMEILLTSDKIVDISK
                     FTTDSLVTNKQSGFQGAWHFSWQPNTINNTKQKILRASWLPTGEYVLESNRVGRAVPN
                     SLWSTFLLLQTASHNLGDHLCNNRSLIPTSYFGVLIGGTGAEMSTHSSEEESFISRLG
                     ATGTSIIRLTPSLTLSGGGSHMFGDSFVADLPEHITSEGIVQNVGLTHVWGPLTVNST
                     LCAALDHNAMVRICSKKDHTYGKWDTFGMRGTLGASYTFLEYDQTMRVFSFANIEATN
                     ILQRAFTETGYNPRSFSKTKLLNIAIPIGIGYEFCLGNSSFALLGKGSIGYSRDIKRE
                     NPSTLAHLAMNDFAWTTNGCSVPTSAHTLANQLILRYKACSLYITAYTINREGKNLSN
                     SLSCGGYVGF"
     misc_feature    472259..472339
                     /gene="pmpA"
                     /locus_tag="CTDLC_0412"
                     /note="Chlamydial polymorphic outer membrane protein
                     repeat; Region: POMP_repeat; TIGR01376"
                     /db_xref="CDD:233385"
     misc_feature    472769..473248
                     /gene="pmpA"
                     /locus_tag="CTDLC_0412"
                     /note="Chlamydia polymorphic membrane protein middle
                     domain; Region: ChlamPMP_M; pfam07548"
                     /db_xref="CDD:254280"
     misc_feature    473381..474109
                     /gene="pmpA"
                     /locus_tag="CTDLC_0412"
                     /note="Autotransporter beta-domain; Region:
                     Autotransporter; pfam03797"
                     /db_xref="CDD:252169"
     gene            474332..479596
                     /gene="pmpB"
                     /locus_tag="CTDLC_0413"
                     /db_xref="GeneID:12387901"
     CDS             474332..479596
                     /gene="pmpB"
                     /locus_tag="CTDLC_0413"
                     /codon_start=1
                     /transl_table=11
                     /product="Polymorphic outer membrane protein"
                     /protein_id="YP_005812344.1"
                     /db_xref="GI:385244500"
                     /db_xref="GeneID:12387901"
                     /translation="MSSMKWLSATAVFAAVLPSVSGFCFPEPKELNFSRVGTSSSTTF
                     TETVGEAGAEYIVSGNASFTKFTNIPTTDTTTPTNSNSSSSNGETASVSEDSDSTTTT
                     PDPKGGGAFYNAHSGVLSFMTRSGTEGSLTLSEIKITGEGGAIFSQGELLFTDLTGLT
                     IQNNLSQLSGGAIFGESTISLSGITKATFSSNSAEVPAPVKKPTEPKAQTASETSGSS
                     SSSGNDSVSSPSSSRAEPAAANLQSHFICATATPAAQTDTETSTPSHKPGSGGAIYAK
                     GDLTIADSQEVLFSINKATKDGGAIFAEKDVSFENITSLKVQTNGAEEKGGAIYAKGD
                     LSIQSSKQSLFNSNYSKQGGGALYVEGDINFQDLEEIRIKYNKAGTFETKKITLPKAQ
                     ASAGNADAWASSSPQSGSGATTVSNSGDSSSGSDSDTSETVPATAKGGGLYTDKNLSI
                     TNITGIIEIANNKATDVGGGAYVKGTLTCENSHRLQFLKNSSDKQGGGIYGEDNITLS
                     NLTGKTLFQENTAKEEGGGLFIKGTDKALTMTGLDSFCLINNTSEKHGGGAFVTKEIS
                     QTYTSDVETIPGITPVHGETVITGNKSTGGNGGGVCTKRLALSNLQSISISGNSAAEN
                     GGGAHTCPDSFPTADTAEQPAAASAATSTPESAPVVSTALSTPSSSTVSSLTLLAASS
                     QASPATSNKETQDPNADTDLLIDYVVDTTISKNTAKKGGGIYAKKAKMSRIDQLNISE
                     NSATEIGGGICCKESLELDALVSLSVTENLVGKEGGGLHAKTVNISNLKSGFSFSNNK
                     ANSSSTGVATTASAPAAAAASLQAAAAAVPSSPATPTYSGVVGGAIYGEKVTFSQCSG
                     TCQFSGNQAIDNNPSQSSLNVQGGAIYAKTSLSIGSSDAGTSYIFSGNSVSTGKSQTT
                     GQIAGGAIYSPTVTLNCPATFSNNTASMATPKTSSEDGSSGNSIKDTIGGAIAGTAIT
                     LSGVSRFSGNTADLGAAIGTLANANTPSATSGSQNSITEKITLENGSFIFERNQANKR
                     GAIYSPSVSIKGNNITFNQNTSTHDGSAIYFTKDATIESLGSVLFTGNNVTATQASSA
                     TSGQNTNTANYGAAIFGDPGTTQSSQTDAILTLLASSGNITFSNNSLQNNQGDTPASK
                     FCSIAGYVKLSLQAAKGKTISFFDCVHTSTKKIGSTQNVYETLDINKEENSNPYTGTI
                     VFSSELHENKSYIPQNAILHNGTLVLKEKTELHVVSFEQKEGSKLIMKPGAVLSNQNI
                     ANGALVINGLTIDLSSMGTPQAGEIFSPPELRIVATTSSASGGSGVSSSIPTNPKRIS
                     AAAPSGSAATTPTMSENKVFLTGDLTLIDPNGNFYQNPMLGSDLDVPLIKLPTNTSDV
                     QVYDLTLSGDLFPQKGYMGTWTLDSNPQTGKLQARWTFDTYRRWVYIPRDNHFYANSI
                     LGSQNSMIVVKQGLINNMLNNARFDDIAYNNFWVSGVGTFLAQQGTPLSEEFSYYSRG
                     TSVAIDAKPRQDFILGAAFSKMVGKTKAIKKMHNYFHKGSEYSYQASVYGGKFLYFLL
                     NKQHGWALPFLIQGVVSYGHIKHDTTTLYPSIHERNKGDWEDLGWLADLRISMDLKEP
                     SKDSSKRITVYGELEYSSIRQKQFTEIDYDPRHFDDCAYRNLSLPVGCAVEGAIMNCN
                     ILMYNKLALAYMPSIYRNNPVCKYRVLSSNEAGQVICGVPTRTSARAEYSTQLYLGPF
                     WTLYGNYTIDVGMYTLSQMTSCGARMIF"
     misc_feature    478007..478579
                     /gene="pmpB"
                     /locus_tag="CTDLC_0413"
                     /note="Chlamydia polymorphic membrane protein middle
                     domain; Region: ChlamPMP_M; pfam07548"
                     /db_xref="CDD:254280"
     misc_feature    478721..479554
                     /gene="pmpB"
                     /locus_tag="CTDLC_0413"
                     /note="Autotransporter beta-domain; Region:
                     Autotransporter; pfam03797"
                     /db_xref="CDD:252169"
     gene            479773..485085
                     /gene="pmpC"
                     /locus_tag="CTDLC_0414"
                     /db_xref="GeneID:12387902"
     CDS             479773..485085
                     /gene="pmpC"
                     /locus_tag="CTDLC_0414"
                     /codon_start=1
                     /transl_table=11
                     /product="Polymorphic outer membrane protein"
                     /protein_id="YP_005812345.1"
                     /db_xref="GI:385244501"
                     /db_xref="GeneID:12387902"
                     /translation="MKFMSATAVFAAALSSVTEASSIQDQIKNTDCNVSKLGYSTSQA
                     FTDMMLADNTEYRAADSVSFYDFSTSSRLPRKHLSSSSEASPTTEGVSSSSSGETDEK
                     TEEELDNGGIIYAREKLTISESQDSLSNQSIELHDNSIFFGEGEVIFDHRVALKNGGA
                     IYGEKEVVFENIKSLLVEVNIAVEKGGSVYAKERVSLENVTEATFSSNGGEQGGGGIY
                     SEQDMLISDCNNVHFQGNAAGATAVKQCLDEEMIVLLAECVDSLSEDTLDSTPETEQT
                     ESNGNQDGSSETEDTQVSESPESTPSPDDVLGKGGGIYTEKSLTITGITGTIDFVSNI
                     ATDSGAGVFTKENLSCTNTNSLQFLKNSAGQHGGGAYVTQTMSVTNTTSESITTPPLI
                     GEVIFSENTAKGHGGGICTNKLSLSNLKTVTLTKNSAKESGGAIFTDLASIPITDTPE
                     SSTPSSSSPASTPEVVASAKINRFFASTAKPAAPSLTEAESDQTDQTETSDTNSDIDV
                     SIENILNVAINQNTSAKKGGAIYGKKAKLSRINNLELSGNSSQDVGGGLCLTESVEFD
                     AIGSLLSHYNSAAKEGGAIHSKTVTLSNLKSTFTFADNTVKAIVESTPEAPEEIPPVE
                     GEESTATEDPNSNTEGSSANTNLEGSQGDTADTGTGDVNNESQDTSDTGNAESEEQLQ
                     DSTQSNEENTLPNSNIDQSNENTDESSDSHTEEITDESVSSSSESGSSTPQDGGAASS
                     GAPSGDQSISANACLAKSYAASTDSSPVSNSSGSEEPVTSSSDSDVTASSDNPDSSSS
                     GDSAGDSEEPTEPEAGSTTETLTLIGGGAIYGETVKIENFSGQGIFSGNKAIDNTTEG
                     SSSKSDVLGGAVYAKTLFNLDSGSSRRTVTFSGNTVSSQSTTGQVAGGAIYSPTVTIA
                     TPVVFSKNSATNNANNTTDTQRKDTFGGAIGATSAVSLSGGAHFLENVADLGSAIGLV
                     PGTQNTETVKLESGSYYFEKNKALKRATIYAPVVSIKAYTATFNQNRSLEEGSAIYFT
                     KEASIESLGSVLFTGNLVTLTLSTTTEGTPATTSGDVTKYGAAIFGQIASSNGSQTDN
                     LPLKLIASGGNICFRNNEYRPTSSDTGTSTFCSIAGDVKLTMQAAKGKTISFFDAIRT
                     STKKTGTQATAYDTLDINKSEDSETVNSAFTGTILFSSELHENKSYIPQNVVLHSGSL
                     VLKPNTELHVISFEQKEGSSLVMTPGSVLSNQTVADGALVINNMTIDLSSVEKNGIAE
                     GNIFTPPELRIIDTTTGGSGGTPSTDSESNQNSDDTEEQNNNDASNQGESANGSSSPA
                     VAAAHTSRTRNFAAAATATPTTTPTATTTTSNQVILGGEIKLIDPNGTFFQNPALRSD
                     QQISLLVLPTDSSKMQAQKIVLTGDIAPQKGYTGTLTLDPDQLQNGTISVLWKFDSYR
                     QWAYVPRDNHFYANSILGSQMLMVTVKQGLLNDKMNLARFEEVSYNNLWISGLGTMLS
                     QVGTPTSEEFTYYSRGASVALDAKPAHDVIVGAAFSKMIGKTKSLKRENNYTHKGSEY
                     SYQASVYGGKPFHFVINKKTEKSLPLLLQGVISYGYIKHDTVTHYPTIRERNKGEWED
                     LGWLTALRVSSVLRTPAQGDTKRITVYGELEYSSIRQKQFTETEYDPRYFDNCTYRNL
                     AIPMGLAFEGELSGNDILMYNRFSVAYMLSIYRNSPTCKYQVLSSGEGGEIICGVPTR
                     NSARGEYSTQLYLGPLWTLYGSYTIEADAHTLAHMMNCGARMTF"
     misc_feature    483376..484068
                     /gene="pmpC"
                     /locus_tag="CTDLC_0414"
                     /note="Chlamydia polymorphic membrane protein middle
                     domain; Region: ChlamPMP_M; pfam07548"
                     /db_xref="CDD:254280"
     misc_feature    484204..485025
                     /gene="pmpC"
                     /locus_tag="CTDLC_0414"
                     /note="Autotransporter beta-domain; Region:
                     Autotransporter; pfam03797"
                     /db_xref="CDD:252169"
     gene            complement(485243..485329)
                     /locus_tag="CTDLC_r027"
                     /db_xref="GeneID:12387903"
     tRNA            complement(485243..485329)
                     /locus_tag="CTDLC_r027"
                     /product="tRNA-Ser"
                     /db_xref="GeneID:12387903"
     gene            485638..486468
                     /gene="yebL"
                     /locus_tag="CTDLC_0415"
                     /db_xref="GeneID:12387904"
     CDS             485638..486468
                     /gene="yebL"
                     /locus_tag="CTDLC_0415"
                     /codon_start=1
                     /transl_table=11
                     /product="Metal transport system, metal-binding protein"
                     /protein_id="YP_005812346.1"
                     /db_xref="GI:385244502"
                     /db_xref="GeneID:12387904"
                     /translation="MRLLFLLLFSLGITCSYGDEVSTRKQILVSIVPYKFLVEQIAGD
                     TCQVFSIVMDNHDPHNYELSPKYIEKIRQVELWFKIGEGFEKTCERIISCKQVDLAAN
                     IDKITNGACCQRFLSFDTHTWLSPKNLKIQIQAITEALVETAPEHETLYRKNCSLLQS
                     QLDLLDQKISSIVSSTSQRNVLVTHGAFAYFCRDYGFIQHTIERANHSELSPKDVVRV
                     ERTIRDHNLHSVILLKHAGKRSSAALVRKFNMTPILLDPYAEDVFNNLLAIATAFANL
                     "
     misc_feature    485710..486435
                     /gene="yebL"
                     /locus_tag="CTDLC_0415"
                     /note="ABC-type metal ion transport system, periplasmic
                     component/surface adhesin [Inorganic ion transport and
                     metabolism]; Region: LraI; COG0803"
                     /db_xref="CDD:223874"
     misc_feature    485713..486462
                     /gene="yebL"
                     /locus_tag="CTDLC_0415"
                     /note="Helical backbone metal receptor (TroA-like domain).
                     These proteins have been shown to function in the ABC
                     transport of ferric siderophores and metal ions such as
                     Mn2+, Fe3+, Cu2+ and/or Zn2+.  Their ligand binding site
                     is formed in the interface between...; Region: TroA-like;
                     cl00262"
                     /db_xref="CDD:260309"
     misc_feature    order(485902..485907,485914..485916,486049..486051)
                     /gene="yebL"
                     /locus_tag="CTDLC_0415"
                     /note="intersubunit interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238347"
     gene            486465..487175
                     /locus_tag="CTDLC_0416"
                     /db_xref="GeneID:12387905"
     CDS             486465..487175
                     /locus_tag="CTDLC_0416"
                     /codon_start=1
                     /transl_table=11
                     /product="Metal transport system ATP-binding protein"
                     /protein_id="YP_005812347.1"
                     /db_xref="GI:385244503"
                     /db_xref="GeneID:12387905"
                     /translation="MTKQMLLENVSFRYGKTGPLIVDHVSCEVYSGDFIGIIGPNGGG
                     KTTLTQLMLGLLQPVCGSISTYSVQDHRPLSIGWVPQHFSYDAAFPITVKETVLSGRL
                     ATLPWYGRYTQEDHEAAEEALLTVDLIDYKDSCFSHLSGGQIQRVLLARALAARPEFL
                     LLDEPTANIDPVNQQKILQILSALNKHCTILMITHDLHHTAGCFNRVFFMNKTLTTLA
                     DTTTISERFCCNTFGRCP"
     misc_feature    486483..487100
                     /locus_tag="CTDLC_0416"
                     /note="ATP-binding cassette transporter nucleotide-binding
                     domain; Region: ABC_ATPase; cl17201"
                     /db_xref="CDD:266551"
     misc_feature    486483..487094
                     /locus_tag="CTDLC_0416"
                     /note="ABC-type antimicrobial peptide transport system,
                     ATPase component [Defense mechanisms]; Region: SalX;
                     COG1136"
                     /db_xref="CDD:224059"
     misc_feature    486579..486602
                     /locus_tag="CTDLC_0416"
                     /note="Walker A/P-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    order(486588..486593,486597..486605,486705..486707,
                     486951..486956,487047..487049)
                     /locus_tag="CTDLC_0416"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:213179"
     misc_feature    486696..486707
                     /locus_tag="CTDLC_0416"
                     /note="Q-loop/lid; other site"
                     /db_xref="CDD:213179"
     misc_feature    486879..486908
                     /locus_tag="CTDLC_0416"
                     /note="ABC transporter signature motif; other site"
                     /db_xref="CDD:213179"
     misc_feature    486939..486956
                     /locus_tag="CTDLC_0416"
                     /note="Walker B; other site"
                     /db_xref="CDD:213179"
     misc_feature    486963..486974
                     /locus_tag="CTDLC_0416"
                     /note="D-loop; other site"
                     /db_xref="CDD:213179"
     misc_feature    487035..487055
                     /locus_tag="CTDLC_0416"
                     /note="H-loop/switch region; other site"
                     /db_xref="CDD:213179"
     gene            487166..488047
                     /gene="yebI"
                     /locus_tag="CTDLC_0417"
                     /db_xref="GeneID:12387906"
     CDS             487166..488047
                     /gene="yebI"
                     /locus_tag="CTDLC_0417"
                     /codon_start=1
                     /transl_table=11
                     /product="Metal transport system permease protein"
                     /protein_id="YP_005812348.1"
                     /db_xref="GI:385244504"
                     /db_xref="GeneID:12387906"
                     /translation="MPMISILCSLFPPLLFPSLLAAFGASIAAGIIGSYIVVKRIVSI
                     SGSIAHSILGGVGIALWLQYQFNLPISPLHGAIASAIFVAICIGNVHLKYHEREDSII
                     SMIWSIGMAIGIICISKLPSFNSELSDFLFGNILWVTPQDLYFLGILDLFIVATVSIC
                     HTRFLALCFDEKYMALNHYSIKTWYLLLLILTAITTVVLMYVMGVILMLSMLVLPVSI
                     ACRFSYKMSHIIYIASILNIVCSFLGIMLAYLLDLPVGPVIAILMGGAYSLSLLLKRS
                     YNASTPSPVSPESKINS"
     misc_feature    487208..487978
                     /gene="yebI"
                     /locus_tag="CTDLC_0417"
                     /note="Transmembrane subunit (TM), of Periplasmic Binding
                     Protein (PBP)-dependent ATP-Binding Cassette (ABC)
                     transporters involved in the uptake of siderophores, heme,
                     vitamin B12, or the divalent cations Mg2+ and Zn2+.
                     PBP-dependent ABC transporters consist of...; Region:
                     TM_ABC_iron-siderophores_like; cd06550"
                     /db_xref="CDD:119348"
     misc_feature    order(487262..487264,487274..487282,487637..487642,
                     487646..487654,487658..487663,487667..487684,
                     487688..487696,487820..487822,487841..487843)
                     /gene="yebI"
                     /locus_tag="CTDLC_0417"
                     /note="ABC-ATPase subunit  interface; other site"
                     /db_xref="CDD:119348"
     misc_feature    order(487277..487279,487283..487285,487298..487300,
                     487457..487459,487463..487468,487475..487480,
                     487487..487492,487499..487501,487508..487513,
                     487517..487519,487547..487552,487559..487561,
                     487787..487789,487934..487936,487943..487948,
                     487955..487957,487964..487969,487976..487978)
                     /gene="yebI"
                     /locus_tag="CTDLC_0417"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:119348"
     misc_feature    order(487517..487519,487589..487591,487763..487765,
                     487775..487777,487910..487912,487925..487927)
                     /gene="yebI"
                     /locus_tag="CTDLC_0417"
                     /note="putative PBP binding regions; other site"
                     /db_xref="CDD:119348"
     gene            complement(489060..489311)
                     /gene="rpmA"
                     /locus_tag="CTDLC_0419"
                     /db_xref="GeneID:12387907"
     CDS             complement(489060..489311)
                     /gene="rpmA"
                     /locus_tag="CTDLC_0419"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="YP_005812349.1"
                     /db_xref="GI:385244505"
                     /db_xref="GeneID:12387907"
                     /translation="MAHKKGQGASRNGRDSESKRLGLKVGAGQRVSTGSILVRQRGTK
                     WHPAVNVGRGKDDTLFALVDGIVVMKKTDRTYVSVIPQA"
     misc_feature    complement(489072..489311)
                     /gene="rpmA"
                     /locus_tag="CTDLC_0419"
                     /note="50S ribosomal protein L27; Validated; Region: rpmA;
                     PRK05435"
                     /db_xref="CDD:235464"
     gene            complement(489342..489668)
                     /gene="rplU"
                     /locus_tag="CTDLC_0420"
                     /db_xref="GeneID:12387908"
     CDS             complement(489342..489668)
                     /gene="rplU"
                     /locus_tag="CTDLC_0420"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="YP_005812350.1"
                     /db_xref="GI:385244506"
                     /db_xref="GeneID:12387908"
                     /translation="MMEPYAVIQTGNKQYQVRKGDVIDVELLDGISEENKEVLFQDVL
                     FTFDGEKASVGAPTVGNAVVKGELVSFVRGEKVVAYKYKKRKNYHKKIGHRQNYLRVK
                     ISDLVM"
     misc_feature    complement(489345..489659)
                     /gene="rplU"
                     /locus_tag="CTDLC_0420"
                     /note="Ribosomal protein L21 [Translation, ribosomal
                     structure and biogenesis]; Region: RplU; COG0261"
                     /db_xref="CDD:223339"
     gene            complement(489982..490054)
                     /locus_tag="CTDLC_r026"
                     /db_xref="GeneID:12387909"
     tRNA            complement(489982..490054)
                     /locus_tag="CTDLC_r026"
                     /product="tRNA-Phe"
                     /db_xref="GeneID:12387909"
     gene            490215..490916
                     /locus_tag="CTDLC_0421"
                     /db_xref="GeneID:12387910"
     CDS             490215..490916
                     /locus_tag="CTDLC_0421"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane spanning protein"
                     /protein_id="YP_005812351.1"
                     /db_xref="GI:385244507"
                     /db_xref="GeneID:12387910"
                     /translation="MRLGFQESGNSPAKGACVMKKHFITGLVILLPLAITIAVVGMIM
                     NFLTQPFVGMVSDVFEKFSFYTKYRAFLRFGLQIVLLFGLFFTTVLLGFLARLMIFKS
                     LLSVYDKILHRIPIIKTVYKAAQQVMTTIFGSQSGSFKQVVMVPFPNREVLCIGLVAG
                     EAPTICSRDADDPMITVFIPTTPNPTSGFLTLFKKSDITFLDMKIEDAFKYVISCGVL
                     NSDPCATSPFIHPQS"
     misc_feature    490254..490913
                     /locus_tag="CTDLC_0421"
                     /note="Uncharacterized conserved protein [Function
                     unknown]; Region: COG2928"
                     /db_xref="CDD:225480"
     gene            491086..491262
                     /locus_tag="CTDLC_042101"
                     /db_xref="GeneID:12387911"
     CDS             491086..491262
                     /locus_tag="CTDLC_042101"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812352.1"
                     /db_xref="GI:385244508"
                     /db_xref="GeneID:12387911"
                     /translation="MLGYFMTRMSKQARRRAQSPKKRKPVYAVQHPQDAPRIAFKAHT
                     NTAKGVGVFVPQIG"
     gene            491453..491938
                     /locus_tag="CTDLC_0422"
                     /db_xref="GeneID:12387912"
     CDS             491453..491938
                     /locus_tag="CTDLC_0422"
                     /codon_start=1
                     /transl_table=11
                     /product="metal-binding protein"
                     /protein_id="YP_005812353.1"
                     /db_xref="GI:385244509"
                     /db_xref="GeneID:12387912"
                     /translation="MLILDRSSPQIFISNEQQDVSIDLQSAQRLVVLFLELQKVSTDQ
                     VYVYFLDDTALAQLHDEQFSDPSPTDTITLPIDKPGIASFPHVLGEAFVSPKAAMRFL
                     EQYTEDQLYHEISRYVVHSLLHMLGYDDQTDEDKRIMQEQEDVSLSFLAEHQALLRPA
                     V"
     misc_feature    491474..491929
                     /locus_tag="CTDLC_0422"
                     /note="Predicted metal-dependent hydrolase [General
                     function prediction only]; Region: COG0319"
                     /db_xref="CDD:223396"
     gene            492071..493180
                     /gene="corC"
                     /locus_tag="CTDLC_0423"
                     /db_xref="GeneID:12387913"
     CDS             492071..493180
                     /gene="corC"
                     /locus_tag="CTDLC_0423"
                     /note="Magnesium and cobalt efflux protein"
                     /codon_start=1
                     /transl_table=11
                     /product="CorC"
                     /protein_id="YP_005812354.1"
                     /db_xref="GI:385244510"
                     /db_xref="GeneID:12387913"
                     /translation="MLYILLAIIVLFLFLGSATHRRASISAYGREGLPPFSSCPKVLP
                     LLCLIYGMLGAPVYQYIHNFFSLSPSIFWLIFLSFALVIYKFLPLCPGYSDDSFSYKV
                     SSSTVKTLENCLAGFKTPSITAMQQTPPPEPPNELSTNISCLDHMIAREIMTPKADIF
                     ALQGDTPISQAFPLIIDEGYSRIPLFTKSIDDITGMVLVKDLSPVYYKDPHTSQPLSS
                     IAYPPLYTPEIRRASLLLQEFRQKRCHLAIVVNEYGFTEGLVSMEDIIEEIFGEIADE
                     YDNQEDVHHKKIGNAWIVDGRMNISDAEECFGLHIEHESSYDTLGGYVFHKLGAVPEK
                     GMKIYYEDFAIDILSCSDRSVEKMKITPRRRKPLS"
     misc_feature    492071..493171
                     /gene="corC"
                     /locus_tag="CTDLC_0423"
                     /note="Hemolysins and related proteins containing CBS
                     domains [General function prediction only]; Region: TlyC;
                     COG1253"
                     /db_xref="CDD:224173"
     misc_feature    492539..492874
                     /gene="corC"
                     /locus_tag="CTDLC_0423"
                     /note="This cd contains two tandem repeats of the
                     cystathionine beta-synthase (CBS pair) domains associated
                     with the CorC_HlyC domain. CorC_HlyC is a transporter
                     associated domain. This small domain is found in Na+/H+
                     antiporters, in proteins involved in...; Region:
                     CBS_pair_CorC_HlyC_assoc; cd04590"
                     /db_xref="CDD:239963"
     misc_feature    492938..493159
                     /gene="corC"
                     /locus_tag="CTDLC_0423"
                     /note="Transporter associated domain; Region: CorC_HlyC;
                     smart01091"
                     /db_xref="CDD:215020"
     gene            493369..493719
                     /gene="rsbV_1"
                     /locus_tag="CTDLC_0424"
                     /db_xref="GeneID:12387914"
     CDS             493369..493719
                     /gene="rsbV_1"
                     /locus_tag="CTDLC_0424"
                     /codon_start=1
                     /transl_table=11
                     /product="Anti-sigma F factor antagonist"
                     /protein_id="YP_005812355.1"
                     /db_xref="GI:385244511"
                     /db_xref="GeneID:12387914"
                     /translation="MSNFQKEEQGQTGILHLQGKLDGVSSPAVQESISESLSNGMKNI
                     ILDCGDLDYISSAGIRVLLQSYHQVGKNAGKIALTSVSKTVEQTLYVTGFLSYFKVFD
                     SVNEALQALAKENS"
     misc_feature    493378..493674
                     /gene="rsbV_1"
                     /locus_tag="CTDLC_0424"
                     /note="Sulphate Transporter and Anti-Sigma factor
                     antagonist) domain of anti-anti-sigma factors, key
                     regulators of anti-sigma factors by phosphorylation;
                     Region: STAS_anti-anti-sigma_factors; cd07043"
                     /db_xref="CDD:132914"
     misc_feature    order(493426..493428,493432..493440,493456..493458,
                     493525..493527,493531..493539,493543..493551,
                     493558..493563,493627..493629,493639..493644,
                     493648..493650)
                     /gene="rsbV_1"
                     /locus_tag="CTDLC_0424"
                     /note="anti sigma factor interaction site; other site"
                     /db_xref="CDD:132914"
     misc_feature    493534..493536
                     /gene="rsbV_1"
                     /locus_tag="CTDLC_0424"
                     /note="regulatory phosphorylation site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:132914"
     gene            493897..495762
                     /locus_tag="CTDLC_0425"
                     /db_xref="GeneID:12387915"
     CDS             493897..495762
                     /locus_tag="CTDLC_0425"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812356.1"
                     /db_xref="GI:385244512"
                     /db_xref="GeneID:12387915"
                     /translation="MRRSVCYVTPSVARAGQISTWRFEYSSANFLPEGTLLKFDLGID
                     GRPIDWEIPSTDLSQPCNTIYLETPSEDIVAAKAVYAPGGYIPTFEFTLPCDVEAGDT
                     FSIILGSSPNFPQEDSSGNGAQLFTQRRKPFSLYVDPSGKGSFEDPDIFTMDIRGNVL
                     KNIRIFAPSYVIKNKRFDITVRFEDEFGNLTNFSPEETHIELSYEHLRENLNWQLFIP
                     ETGFVILPNLYFNEPGIYRIQLRNQATKEVFTSAPIKCFAETSSHLLWGLLHGESERV
                     DSEGNIESCLRYFRDDCALNFFATSSFEIQDGLTPETIKTINQTVADFNEEDRFIALS
                     GAQYLSEEPGEGIREVLLMKEPKSPGKHKECKLFPLSKLYKQSTSHELISIPSFTASK
                     KFGYNFNNFHPEFERVVEIYNAWGCSERTEAEGNPFPIKGSIDSENPEGTVLSALKRN
                     LRFGFVAGGLDDRNLYNHFFDSDQQQYSPGLTAVICNKYSRDSLLEALYQRQCYATTG
                     QRIIVNFQITSAPMGSELSTAIKPGLVINRHISGYVAGTAKIASIEIIRNEDILHTFH
                     PDGNNFEYEYDDLSPFAQVTLKDPQNGAPFAFYYLRVTQENGAMAWSSPIWIDLN"
     misc_feature    <495109..495750
                     /locus_tag="CTDLC_0425"
                     /note="Protein of unknown function (DUF3604); Region:
                     DUF3604; pfam12228"
                     /db_xref="CDD:256912"
     gene            495959..497068
                     /locus_tag="CTDLC_0426"
                     /db_xref="GeneID:12387916"
     CDS             495959..497068
                     /locus_tag="CTDLC_0426"
                     /note="thiamine biosynthesis enzyme"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="YP_005812357.1"
                     /db_xref="GI:385244513"
                     /db_xref="GeneID:12387916"
                     /translation="MTTLPARILPKSACLKTLFDDYLSGARLSEEQALQLLLVDAEDQ
                     QALWSFADLIRANRVGDTVFYSSTLYLYPTNFCQFNCTFCSFYAKPGNPTGWFFTPDQ
                     LVQSIKENPSPITETHIVAGCYPSCNLAYYEELFSKIKQNFPDLHIKALSAIEYDYLS
                     KLDNLPVKEVMQRLRIAGLDSIPGGGAEILVDEVRETLSRGRLSSQGFLEIHETAHSL
                     GIPSNATMLCYHRETPADIMTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLHKM
                     TSRHSIPPATIIAVARLFLDNIPNIKALWNYLGLDVALHLLSCGANDLSSTHQGEKVF
                     RMASSQEPIRMDIEGMSHLIIQHGRIPCLVNSKTV"
     misc_feature    495959..497065
                     /locus_tag="CTDLC_0426"
                     /note="hypothetical protein; Provisional; Region:
                     PRK05926"
                     /db_xref="CDD:168296"
     misc_feature    496169..>496558
                     /locus_tag="CTDLC_0426"
                     /note="Radical SAM superfamily. Enzymes of this family
                     generate radicals by combining a 4Fe-4S cluster and
                     S-adenosylmethionine (SAM) in close proximity. They are
                     characterized by a conserved CxxxCxxC motif, which
                     coordinates the conserved iron-sulfur cluster; Region:
                     Radical_SAM; cd01335"
                     /db_xref="CDD:100105"
     misc_feature    order(496187..496189,496193..496195,496199..496201,
                     496205..496213,496319..496321,496325..496330,
                     496421..496429,496526..496528)
                     /locus_tag="CTDLC_0426"
                     /note="FeS/SAM binding site; other site"
                     /db_xref="CDD:100105"
     gene            497041..497862
                     /locus_tag="CTDLC_0427"
                     /db_xref="GeneID:12387917"
     CDS             497041..497862
                     /locus_tag="CTDLC_0427"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosolic protein"
                     /protein_id="YP_005812358.1"
                     /db_xref="GI:385244514"
                     /db_xref="GeneID:12387917"
                     /translation="MLSQFQDRLNIGCVRYVNALPFSSGLSQAPGVSLLMDTPTNLVP
                     KLLSREIDYALTSVAATFSSPLHRVSSFGIAAYKKILSVNLHATSQFFAKEAPHIAAT
                     KESLSSILLLRVLCENLWNIPFPSVTLLSSDSILTQAEHYDALLLIGDTALRHPIIPG
                     FHTYDLAASWYDLTAKPFVFAGILSLSSTISFQLQQEFSSALNYFQNHKEDITSKAAA
                     LLKLPESLMQEYYTLCRYELSEEDFAGLEQFRDYYDRLPQQAKYPNHVRFSCAYL"
     misc_feature    497059..497832
                     /locus_tag="CTDLC_0427"
                     /note="Predicted periplasmic solute-binding protein
                     [General function prediction only]; Region: COG1427"
                     /db_xref="CDD:224344"
     gene            497798..498487
                     /gene="ubiE"
                     /locus_tag="CTDLC_0428"
                     /db_xref="GeneID:12387918"
     CDS             497798..498487
                     /gene="ubiE"
                     /locus_tag="CTDLC_0428"
                     /EC_number="2.1.1.-"
                     /codon_start=1
                     /transl_table=11
                     /product="Ubiquinone/menaquinone biosynthesis
                     methyltransferase UBIE"
                     /protein_id="YP_005812359.1"
                     /db_xref="GI:385244515"
                     /db_xref="GeneID:12387918"
                     /translation="MTDFHNKPNIQIMFDSLAPTYDKINGILSLGLHIAWNNALVSLL
                     GETNHLLDLCAGTGRVALSYVQNYPRASATLVDFSTKMLENVQKRHPSAPFSYITSDV
                     THLPLPDNTFRLASMAYGLRNLSYPLEALREVYRVLQPGGHLGILELTRPATYNPVYL
                     LHKLYLNLVVPSVGRFYSGNSYAYSYLKESIRDLPRDAALEAIFHAAHLRPIRKRKLL
                     FGTATIWILEK"
     misc_feature    497813..498484
                     /gene="ubiE"
                     /locus_tag="CTDLC_0428"
                     /note="Methylase involved in ubiquinone/menaquinone
                     biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226"
                     /db_xref="CDD:225136"
     misc_feature    497945..498229
                     /gene="ubiE"
                     /locus_tag="CTDLC_0428"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases;
                     cd02440"
                     /db_xref="CDD:100107"
     misc_feature    order(497954..497974,498026..498031,498095..498103,
                     498149..498151)
                     /gene="ubiE"
                     /locus_tag="CTDLC_0428"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:100107"
     misc_feature    <498311..498421
                     /gene="ubiE"
                     /locus_tag="CTDLC_0428"
                     /note="The Ntn hydrolases (N-terminal nucleophile) are a
                     diverse superfamily of of enzymes that are activated
                     autocatalytically via an N-terminally lcated nucleophilic
                     amino acid.  N-terminal nucleophile (NTN-) hydrolase
                     superfamily, which contains a...; Region: Ntn_hydrolase;
                     cl00467"
                     /db_xref="CDD:260443"
     gene            complement(498513..499538)
                     /locus_tag="CTDLC_0429"
                     /db_xref="GeneID:12387919"
     CDS             complement(498513..499538)
                     /locus_tag="CTDLC_0429"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812360.1"
                     /db_xref="GI:385244516"
                     /db_xref="GeneID:12387919"
                     /translation="MLSNRASPILEPMTTYPVPQNPLLLRVLRLMDAFSKSDDERDFY
                     LDRVEGFIFYIDLDKDQEDLDKIYQELEENADRYCLIPKLTFYEIKKIMETFVNEKIY
                     DIDTKEKFLEIVQSKNAREQFLEFLYDHETEQEKWQQFYVERSRIRIIEWLRNNQFQF
                     VFEEDLDFSKHILEQLKVHLFDAKVSKELTQARQLLLNKSKVYYSNEALNPRPKRGRP
                     PKQSAKVEAETTISSDIYTKVPSVARRFLFLPEITSPSSLTFSEKFDTEEEFLAHLRG
                     GGRLEDQLNLAKFSERFDSLRELSAKLGYDSDGETGDFFDEEYDDEEEEIKPKKTTKR
                     GRKKSRS"
     misc_feature    complement(498993..499481)
                     /locus_tag="CTDLC_0429"
                     /note="Uncharacterized protein family (UPF0158); Region:
                     UPF0158; pfam03682"
                     /db_xref="CDD:146358"
     gene            complement(499563..500390)
                     /gene="dapF"
                     /locus_tag="CTDLC_0430"
                     /db_xref="GeneID:12387920"
     CDS             complement(499563..500390)
                     /gene="dapF"
                     /locus_tag="CTDLC_0430"
                     /EC_number="5.1.1.7"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="YP_005812361.1"
                     /db_xref="GI:385244517"
                     /db_xref="GeneID:12387920"
                     /translation="MGFSSLLTTCRYLLYSGAGNSFILGESMPSLEDVLFLCQEEMVD
                     GFLCVESSEIADAKLTVFNSDGSIASMCGNGLRCAMAHVAQCFGLEDVSIETERGVYQ
                     GKFFSMNRVLVDMTLPDWKKAERKLTHVLPGMPEQVFFIDTGVPHVVVFVSDLSKVPV
                     QEWGSFLRYHEDFAPEGVNVDFVQRKKDDLLLVYTYERGCERETLSCGTGMLASALVA
                     ADIFSLGQDFSIAVCSRSRNLIKIFSEKGKVFLEGPVSLLNRSENFGWLEPKSRRFG"
     misc_feature    complement(499596..500363)
                     /gene="dapF"
                     /locus_tag="CTDLC_0430"
                     /note="diaminopimelate epimerase; Region: DapF; TIGR00652"
                     /db_xref="CDD:213546"
     misc_feature    complement(500046..>500261)
                     /gene="dapF"
                     /locus_tag="CTDLC_0430"
                     /note="Diaminopimelate epimerase; Region: DAP_epimerase;
                     cl19724"
                     /db_xref="CDD:268077"
     misc_feature    complement(499617..499976)
                     /gene="dapF"
                     /locus_tag="CTDLC_0430"
                     /note="Diaminopimelate epimerase; Region: DAP_epimerase;
                     cl19724"
                     /db_xref="CDD:268077"
     gene            complement(500359..500949)
                     /gene="clpP_1"
                     /locus_tag="CTDLC_0431"
                     /db_xref="GeneID:12387921"
     CDS             complement(500359..500949)
                     /gene="clpP_1"
                     /locus_tag="CTDLC_0431"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_005812362.1"
                     /db_xref="GI:385244518"
                     /db_xref="GeneID:12387921"
                     /translation="MGDSMPEGEMMHKLQDVIDRKLLDSRRIFFSEPVTEKSATEAIK
                     KLWYLELTNPGQPIVFVINSPGGSVDAGFAVWDQIKMISSPLTTVVTGLAASMGSVLS
                     LCAVPGRRFATPHARIMIHQPSIGGTITGQATDLDIHAREILKTKARIIDVYVEATGQ
                     SREVIEKAIDRDMWMSANEAMEFGLLDGILFSFNDL"
     misc_feature    complement(500383..500898)
                     /gene="clpP_1"
                     /locus_tag="CTDLC_0431"
                     /note="Caseinolytic protease (ClpP) is an ATP-dependent,
                     highly conserved serine protease; Region: S14_ClpP_2;
                     cd07017"
                     /db_xref="CDD:132928"
     misc_feature    complement(order(500428..500430,500434..500436,
                     500503..500505,500509..500511,500515..500517,
                     500524..500526,500572..500583,500599..500601,
                     500605..500607,500671..500673,500695..500697,
                     500707..500712,500719..500721,500728..500730,
                     500740..500742,500761..500763,500806..500808,
                     500815..500820,500827..500832,500857..500859,
                     500863..500865))
                     /gene="clpP_1"
                     /locus_tag="CTDLC_0431"
                     /note="oligomer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:132928"
     misc_feature    complement(order(500434..500436,500587..500589,
                     500662..500664))
                     /gene="clpP_1"
                     /locus_tag="CTDLC_0431"
                     /note="active site residues [active]"
                     /db_xref="CDD:132928"
     gene            complement(500949..502472)
                     /gene="glyA"
                     /locus_tag="CTDLC_0432"
                     /db_xref="GeneID:12387922"
     CDS             complement(500949..502472)
                     /gene="glyA"
                     /locus_tag="CTDLC_0432"
                     /EC_number="2.1.2.1"
                     /codon_start=1
                     /transl_table=11
                     /product="Serine hydroxymethyltransferase"
                     /protein_id="YP_005812363.1"
                     /db_xref="GI:385244519"
                     /db_xref="GeneID:12387922"
                     /translation="MQGLISGGGNMASLLDRYLRNISDKSQQNLASVAYLASLDHLLH
                     AFPSIGQSIVQELKSQRSRLKMIASENFSSLSVQLAMGNLLTDKYCEGSPFKRFYSCC
                     ENVDAIEWECAETAKELFGAESAFVQPHSGADANLLAIMSIITQKIQSPAVQRLGYKT
                     INDLPEQEYEALKAEMAQHKCLGPSLNSGGHLTHGTVRMNIMSKLMHCLPYEVNLDTE
                     LFDYDEIAKIAKEHKPTVLIAGYSSYSRRLNFATLKQIAEDCGAVLWVDMAHFAGLVA
                     GGVFVGEENPMPYADIVTTTTHKTLRGPRGGLVLAKKEYANTLNKACPLMMGGPLPHV
                     IAAKAIALKEAMTINFRKYAHKVVENARTLAEVFQRNGLRLLTGGTDNHMLIIDLTSL
                     GVPGRIAEDMLTSVGIAVNRNTIPSDASGQWKTSGIRLGTPALTTLGMGSAEMEEVAN
                     IIVKVLRNITVRSNAESGSSKSEGELSEGIAQEARQRVADLLGRFPLYPEIDLETLV"
     misc_feature    complement(501000..502346)
                     /gene="glyA"
                     /locus_tag="CTDLC_0432"
                     /note="Serine-glycine hydroxymethyltransferase (SHMT).
                     This family belongs to pyridoxal phosphate (PLP)-dependent
                     aspartate aminotransferase superfamily (fold I). SHMT
                     carries out interconversion of serine and glycine; it
                     catalyzes the transfer of hydroxymethyl...; Region: SHMT;
                     cd00378"
                     /db_xref="CDD:99733"
     misc_feature    complement(order(501426..501428,501480..501482,
                     501858..501863,502062..502064,502083..502085,
                     502128..502130,502152..502157,502209..502211,
                     502263..502265,502278..502280,502305..502310,
                     502329..502331,502335..502337))
                     /gene="glyA"
                     /locus_tag="CTDLC_0432"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:99733"
     misc_feature    complement(order(501186..501188,501558..501560,
                     501576..501581,501663..501665,501672..501674,
                     501747..501749,501900..501902,502074..502079,
                     502176..502178,502206..502208,502266..502268))
                     /gene="glyA"
                     /locus_tag="CTDLC_0432"
                     /note="glycine-pyridoxal phosphate binding site [chemical
                     binding]; other site"
                     /db_xref="CDD:99733"
     misc_feature    complement(order(501186..501188,501576..501578,
                     501900..501902,502266..502268))
                     /gene="glyA"
                     /locus_tag="CTDLC_0432"
                     /note="active site"
                     /db_xref="CDD:99733"
     misc_feature    complement(order(501234..501236,501504..501506,
                     501897..501899,501903..501905,501915..501917,
                     502179..502181,502200..502202))
                     /gene="glyA"
                     /locus_tag="CTDLC_0432"
                     /note="folate binding site [chemical binding]; other site"
                     /db_xref="CDD:99733"
     gene            502806..503477
                     /gene="hemD"
                     /locus_tag="CTDLC_0433"
                     /db_xref="GeneID:12387923"
     CDS             502806..503477
                     /gene="hemD"
                     /locus_tag="CTDLC_0433"
                     /EC_number="2.1.1.107"
                     /EC_number="4.2.1.75"
                     /note="uroporphyrinogen-III synthase"
                     /codon_start=1
                     /transl_table=11
                     /product="Uroporphyrin-III C-methyltransferase"
                     /protein_id="YP_005812364.1"
                     /db_xref="GI:385244520"
                     /db_xref="GeneID:12387923"
                     /translation="MPLYLGLNPSSAKQYSAVFQPIIRIVPFSKHVPQIRHARKFLVS
                     TSHILLTSPSSTACFFSSIRKRIPLSLFRNKSFVTIGEATSSRVKAFLPKANIVQSAF
                     PQAEAFLPILSTLPSSSSLLYPHSVLARPILRSLLQTLPFSSFSYPHYTVKPITLSVS
                     TFLPHKTIILTSPSIVRAYAQLFPCLPDKEHWCLGEISAAEFKQIFHTPPSKILFSTK
                     EPTGC"
     misc_feature    502848..503417
                     /gene="hemD"
                     /locus_tag="CTDLC_0433"
                     /note="Uroporphyrinogen-III synthase (HemD) catalyzes the
                     asymmetrical cyclization of tetrapyrrole (linear) to
                     uroporphyrinogen-III, the fourth step in the biosynthesis
                     of heme. This ubiquitous enzyme is present in eukaryotes,
                     bacteria and archaea. Mutations in...; Region: HemD;
                     cd06578"
                     /db_xref="CDD:119440"
     misc_feature    order(502959..502967,503052..503054,503181..503183,
                     503253..503255,503259..503261,503316..503330)
                     /gene="hemD"
                     /locus_tag="CTDLC_0433"
                     /note="active site"
                     /db_xref="CDD:119440"
     gene            503580..504116
                     /gene="ispF"
                     /locus_tag="CTDLC_0434"
                     /db_xref="GeneID:12387924"
     CDS             503580..504116
                     /gene="ispF"
                     /locus_tag="CTDLC_0434"
                     /EC_number="4.6.1.12"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclo diphosphate
                     synthase"
                     /protein_id="YP_005812365.1"
                     /db_xref="GI:385244521"
                     /db_xref="GeneID:12387924"
                     /translation="MTEIPSSFVLPDPEWIYRVGIGQDSHRFLPDEDPKPCILGGIIF
                     ENTPGFEANSDGDVVFHAICNAFSSVTHKGILGGLADELLKTKGITDSVVYLQEAVAS
                     LKPTQRVSHLAITIEGKRPKLLPQLPSMRKRIAEVLHIPLDSINITATSGEGLTAMGQ
                     GYGVQCFCVLTIMEYCRY"
     misc_feature    503631..504095
                     /gene="ispF"
                     /locus_tag="CTDLC_0434"
                     /note="MECDP_synthase
                     (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase),
                     encoded by the ispF gene, catalyzes the formation of
                     2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the
                     non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid
                     biosynthesis; Region: MECDP_synthase; cd00554"
                     /db_xref="CDD:100025"
     misc_feature    order(503631..503636,503640..503642,503646..503648,
                     503652..503660,503670..503672,503784..503786,
                     503790..503795,503799..503804,503910..503912,
                     503916..503918,503922..503924,503943..503945,
                     503949..503951,504015..504017,504021..504026,
                     504033..504041,504078..504080,504084..504086,
                     504090..504092)
                     /gene="ispF"
                     /locus_tag="CTDLC_0434"
                     /note="homotrimer interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:100025"
     misc_feature    order(503649..503651,503655..503657,503760..503762)
                     /gene="ispF"
                     /locus_tag="CTDLC_0434"
                     /note="zinc binding site [ion binding]; other site"
                     /db_xref="CDD:100025"
     misc_feature    order(503802..503804,503808..503810,503931..503936,
                     503940..503951,504024..504032)
                     /gene="ispF"
                     /locus_tag="CTDLC_0434"
                     /note="CDP-binding sites; other site"
                     /db_xref="CDD:100025"
     gene            complement(504113..505165)
                     /gene="cysJ"
                     /locus_tag="CTDLC_0435"
                     /db_xref="GeneID:12387925"
     CDS             complement(504113..505165)
                     /gene="cysJ"
                     /locus_tag="CTDLC_0435"
                     /EC_number="1.6.2.4"
                     /codon_start=1
                     /transl_table=11