LOCUS NC_017772 24346 bp DNA linear CON 02-MAY-2023
DEFINITION Pseudonocardia dioxanivorans CB1190 plasmid pPSED02, complete
sequence.
ACCESSION NC_017772
VERSION NC_017772.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN00713596
KEYWORDS GSC:MIGS:2.1; RefSeq.
SOURCE Pseudonocardia dioxanivorans CB1190
ORGANISM Pseudonocardia dioxanivorans CB1190
Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales;
Pseudonocardiaceae; Pseudonocardia.
REFERENCE 1 (bases 1 to 24346)
AUTHORS Sales,C.M., Mahendra,S., Grostern,A., Parales,R.E., Goodwin,L.A.,
Woyke,T., Nolan,M., Lapidus,A., Chertkov,O., Ovchinnikova,G.,
Sczyrba,A. and Alvarez-Cohen,L.
TITLE Genome sequence of the 1,4-dioxane-degrading Pseudonocardia
dioxanivorans strain CB1190
JOURNAL J Bacteriol 193 (17), 4549-4550 (2011)
PUBMED 21725009
REFERENCE 2 (bases 1 to 24346)
AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L.,
Pitluck,S., Chertkov,O., Detter,J.C., Han,C., Tapia,R., Land,M.,
Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I.,
Sales,C.M., Parales,R.E., Alvarez-Cohen,L., Mahendra,S. and
Woyke,T.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2011) US DOE Joint Genome Institute, 2800
Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CP002595.1.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4083663
Source DNA and organism available from Shaily Mahendra
(mahendra@seas.ucla.edu)
Contacts: Shaily Mahendra (mahendra@seas.ucla.edu)
Tanja Woyke (microbe@cuba.jgi-psf.org)
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. it is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##MIGS-Data-START##
investigation_type :: bacteria_archaea
project_name :: Pseudonocardia dioxanivorans CB1190
collection_date :: Missing
lat_lon :: 34.299366 -79.876714
depth :: Missing
alt_elev :: Missing
country :: USA
environment :: Sludge, Fresh water
num_replicons :: 4
ref_biomaterial :: ATCC 55486, DSM 44775
biotic_relationship :: Free living
trophic_level :: Missing
rel_to_oxygen :: Aerobe
isol_growth_condt :: Missing
sequencing_meth :: WGS
assembly :: Newbler v. 2.3 (pre-release)
finishing_strategy :: Finished
GOLD Stamp ID :: Gi02043
Type Strain :: Yes
Greengenes ID :: 91804
Isolation Site :: Industrial sludge contaminated with
1,4-dioxane
Isolation Comments :: isolated by RE Parales, JA Romesser, for
Celgene Corporation
Temperature Range :: Mesophile
Temperature Optimum :: 30CC
Gram Staining :: Gram+
Diseases :: None
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal :: Finished
Current Finishing Status :: Finished
Assembly Method :: Newbler v. 2.3
Genome Coverage :: 30x
Sequencing Technology :: 454, Illumina
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 03/10/2023 02:53:57
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation
Pipeline (PGAP)
Annotation Method :: Best-placed reference protein set;
GeneMarkS-2+
Annotation Software revision :: 6.4
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 18
CDSs (total) :: 18
Genes (coding) :: 18
CDSs (with protein) :: 18
Genes (RNA) :: 0
tRNAs :: 0
ncRNAs :: 0
Pseudo Genes (total) :: 0
CDSs (without protein) :: 0
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..24346
/organism="Pseudonocardia dioxanivorans CB1190"
/mol_type="genomic DNA"
/strain="CB1190"
/isolation_source="industrial sludge contaminated with
1,4-dioxane"
/type_material="type strain of Pseudonocardia
dioxanivorans"
/db_xref="taxon:675635"
/plasmid="pPSED02"
/country="USA"
/lat_lon="34.299366 N 79.876714 W"
/collected_by="RE Parales, JA Romesser"
gene complement(283..528)
/locus_tag="PSED_RS00005"
/old_locus_tag="Psed_6885"
CDS complement(283..528)
/locus_tag="PSED_RS00005"
/old_locus_tag="Psed_6885"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014682985.1"
/translation="MTVQQVFSGGEPGKDYPLSSGLPNAEANDRLFELGYDDEDRISR
IRVSGTGRLYGFRRDERFYALWWDPHHQIWPSRLRNT"
gene complement(780..1241)
/locus_tag="PSED_RS00010"
/old_locus_tag="Psed_6886"
CDS complement(780..1241)
/locus_tag="PSED_RS00010"
/old_locus_tag="Psed_6886"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015883017.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system antitoxin SocA
domain-containing protein"
/protein_id="WP_014682986.1"
/translation="MAQVADVAAYILSKHGPMTAMKLQKLVYYCQAWHLVWAEQPMFS
SEIQAWANGPVVYDLYKLHRGRFTLNPGEIPGDPDALDGHEKYTVDAIIDAYGDKSAH
WLSELTHAEDPWRNARERAGLGERDRGDAPIELADMAEYYDSLTSSNADAV"
gene 1845..2303
/locus_tag="PSED_RS00015"
/old_locus_tag="Psed_6887"
CDS 1845..2303
/locus_tag="PSED_RS00015"
/old_locus_tag="Psed_6887"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_181392030.1"
/translation="MIGGRPHLNRAAIEQQVGMSVQTQANLYAQRKTNGHPEGVRIGR
VLWFDEEKVLAFYRDRARAKQASLTEVDRGGDPDELCDVATATKVLGYTNESTIRAFL
TANQGYFPEPDQVESLPSGRLHRLWKRSTLWEFADGRSRPGRRGRARPKT"
gene 2515..4305
/locus_tag="PSED_RS00020"
/old_locus_tag="Psed_6888"
CDS 2515..4305
/locus_tag="PSED_RS00020"
/old_locus_tag="Psed_6888"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_018251857.1"
/GO_function="GO:0008168 - methyltransferase activity
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DNA cytosine methyltransferase"
/protein_id="WP_181392033.1"
/translation="MLTVTDLFCGAGGSSSGAESVPGVKVRMACNHWDKAIETHNFNM
PHADHDIADIAETDPRRYPHTDLLWASPSCTFWSQARGERQDFAQQPTEPTLFDLADT
EDCDDEEPAAVEARERSRALMQDVPRFAEFHRYRAVIVENVTDILKWVHFGKWVARMR
ALDYDHEVLTLNSAFAHQLGAPAPQLRDRAYVVFWQRRYRRPDFARWTRPQAWCPDCS
EVVTAIRAPKNPARSQNVQGIYGAQYTFRCPRISCRNAIVQPYVLPAAAAIDLSNPGE
RIGDRKRPLKPKTLARIEAGLRRYCRPITLEAAGNTFERRPGVRTWPIEDPLRTVHTS
ASKAVAYPPLVGVTARGPRELETGGGRLTDGLLVPVEGRDGKVAAPISRPLRAQTARA
ETGLLVPAGGTWNDEARHIDEPMRVRTTRETDGVVVVPLRNHNRPKAVGEPLDTFAAS
GNHHGLAMLMRNNTGGAEMCTPLDEPARTITTAGHQSLVSWNPEILYAYDSGTFRALN
QPLPTQTTVEGDALLEHELAVEECRFRMLTVDEVKLGMAFAADFVLLARAKRDRVKMC
GNAVTPPVARDIIAAVVEAVTDDTVDHLAA"
gene complement(4465..4842)
/locus_tag="PSED_RS00025"
CDS complement(4465..4842)
/locus_tag="PSED_RS00025"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_181392035.1"
/translation="MSAARTPSRREAVDAARRLLQSKVDVVADLADAGSRVDQAEAAA
AAAEDALREARLTYKKRFDDAVRTGWTEPELAEAGLTPERGHLPRGRRRQRRTNPPAG
GEVAAVEHQHPGQNIPEAPALAG"
gene 4983..5186
/locus_tag="PSED_RS00030"
/old_locus_tag="Psed_6889"
CDS 4983..5186
/locus_tag="PSED_RS00030"
/old_locus_tag="Psed_6889"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014682989.1"
/translation="MCFPGENATSAELAAKLIKLDELIGRGFGRSNEEVIWWGVDRVD
GRVRRADDRTRSPSSSRTRNSRL"
gene 5297..5533
/locus_tag="PSED_RS00035"
/old_locus_tag="Psed_6890"
CDS 5297..5533
/locus_tag="PSED_RS00035"
/old_locus_tag="Psed_6890"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_181392037.1"
/translation="MQELMMLRAELMEHRRVLRNVGGNLNDVARHANATGELHAATAR
VQELVARTVERVDAAVAAVEHVGGQARLERRAAR"
gene 5530..6690
/locus_tag="PSED_RS00040"
/old_locus_tag="Psed_6891"
CDS 5530..6690
/locus_tag="PSED_RS00040"
/old_locus_tag="Psed_6891"
/inference="COORDINATES: protein motif:HMM:NF015397.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="relaxase/mobilization nuclease domain-containing
protein"
/protein_id="WP_014682991.1"
/translation="MIAKISRGWRAGGLVRYLMGAGRFNEHTNQHVVASWDGDPQRHQ
PQRRPDGEFDVARLVDELTEAAEAAGIAQTPPPTVTGQRVPRGPVWHCSLRNSATDRV
LTDAEWAEVVEDLMDRTGIAARGDLGGCRWVAIRHADDHVHIAAVLVRQDNGRRVHPR
NDYLRAREVCRDAEQRYGLSTTAPADRTAAEPATRAEQEKALRRGETETSREWLRRAA
RIAAVQAQDPEEFFRRLADQGVAVLPREMPPGQLVGYALAAPGDTNADGMPVWFSGRS
LARDLSLPKLLERWASAAPPAQPLPPEAHERARVGAAERAEAVVDAISAVEHATAALA
AGERDVAASVAHAAGDMVTAVCTVTGKASELDRVQWEVAERFDRAVRTPGVG"
gene 7053..9077
/locus_tag="PSED_RS00045"
/old_locus_tag="Psed_6892"
CDS 7053..9077
/locus_tag="PSED_RS00045"
/old_locus_tag="Psed_6892"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014682992.1"
/translation="MTETAEVPVLGLGRDQTQLWTQALMGLAGVVRQRRLELGRRAWN
RGEDAARGHDQLAAAADPPVRTMTDQERAQFERRMRGQEPWGAGEPERRDGVTADGAV
SVMFGPADPFGAWGLEAVARPVGGHDPVRTVVRCADEATARALADDLMAGGPEKVARL
HGFAGLAADRARAAQQEGIDTEQQRLARAAAAVREIWPASLADAVLEPTAAQRRTGQT
FNPAFGALAWRLAQMETHGVSMTTVLAEVGVARLMEPDVHNPAALAAHLVEQMLPNDE
PIDLDLRAQAEHRAARSAAGPLRPDGARPLHAQAIEEALNEALPDDVLAKVQRARGYD
KLLDGINAQIDNGRAVDGLLARLPVGRIRNAVDPASYLAAIVRQRGNLTERPPVAGGR
ASMAAVVEESLPRATAEKVVGCSGWPRLAKRLADWQNEGVPVSELIGSLPTMQVDSAR
RPAAFVTALLTSRVQSYRATPRDDTAGVTDKRPPSRAPAGQPDREGEPALRQTADDSP
HEAEASVDLGWTEQLDESSAVDRVGLDAAVGLGTVEQDARLAARLGRAPAASAGHGAA
AAVAEARAHRDEVLAGHARVTPDVTDTREREDLQGQADAHVLDQEAAAERATAAEQHG
AQVAAALRAEVAYVPEATAITTRTTAARGVVTAPRRPRPRTHEQDRSRSR"
gene 9079..9327
/locus_tag="PSED_RS00050"
/old_locus_tag="Psed_6893"
CDS 9079..9327
/locus_tag="PSED_RS00050"
/old_locus_tag="Psed_6893"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014682993.1"
/translation="MAISQDDMRQLLHRAEAHALMPDHFPVPVRVDGAWWHVPAAAPA
DGDFEPAAPAAAAEFDRLDAKLTTAHARGAATDMDNPR"
gene 9324..10619
/locus_tag="PSED_RS00055"
/old_locus_tag="Psed_6894"
CDS 9324..10619
/locus_tag="PSED_RS00055"
/old_locus_tag="Psed_6894"
/inference="COORDINATES: protein motif:HMM:NF012974.2"
/GO_function="GO:0003678 - DNA helicase activity [Evidence
IEA]"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/GO_process="GO:0006260 - DNA replication [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DnaB-like helicase N-terminal domain-containing
protein"
/protein_id="WP_014682994.1"
/translation="MSTTDVRGAAAGDLAAQALLGALLWEPGRIRDVSDWLESADFEH
WAHRAIYQTLTGLIADGRPVVLQDLPGILARGEYHDAHVDSTGSGPLSAPALHTLLSM
TPATPDRAHRDQGGTARSEHVRYARIVLDNSVRRQVAAVGARIEQLGRTAAQHDDQHS
ADPMGPALAEVRAALQRLEGRVATSHAGRVSITEALSGAPPVAELPQRGEPRTSVTAP
AALKTAAVPSSAEAERAERAFIGACLVAPEVRSAATEWLRPEDFASPDAAQTWRVVLD
MTQRGDPVDFVLVAVEVETARAVAHAAGLELVGYDPSTLHRLAERGDQLGGHRAAEVI
RRAALQRITHRARTELDAVAENRAFGSRALLQNAQQTVSEAQQTSGRLSGQSAPSIAA
AMFTGSSGLAAVPPPRMSSSEHAPPRSQQARGGSPRRRR"
gene complement(11937..18065)
/locus_tag="PSED_RS00060"
/old_locus_tag="Psed_6896"
CDS complement(11937..18065)
/locus_tag="PSED_RS00060"
/old_locus_tag="Psed_6896"
/inference="COORDINATES: protein motif:HMM:NF016724.2"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/GO_function="GO:0016787 - hydrolase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SNF2-related protein"
/protein_id="WP_181392039.1"
/translation="MAARAAFDAADHDRALQLIDAAEELDPAAAQNWARIRGIIAAAR
PAPAAPAAAGTPPSPGETPTAEPQFDLTELQRARERANSLTHQARHSQAATVLAAAVA
PAAQAFGAVAPQVLQLRLELAEAQFTAGDYTGAGPVFRDLASDLAEAQDADTDLVWRC
RRQAATCRALTGDTGDAIRQLTALMTEHHARYGTDDEVQELREQLRLLGVEVEIGRQV
TVEAGPAAEPSTSNPPAPDAATAVPTAPAAAVHVPAPGSGDDAGQRPPTSAATVSSEA
AAPAPPVLEIGAEPTTEAERTAAAVPTGRPPTNESSVAVPAPPHAEPTASVADPDPHP
GPSVSAAAQFRAATQDQLAPSGSLARVRANIAALQTLRAPRDGRPFTADEQAVLARWS
GWGAVPEVFDPLREDLAWARAQLADLLDPQEMKAAARNTLNAHYTDLGLVAPIWSALQ
QLGFREGRVLEPGCGSGNFIGAAPAGAQMVGVEVEPVTAAIAAALYPNAEIRSESFAQ
TRAPAGSFDMVVGNVPFGKVVLADRDYNAPGHSIHNHFILRSLQLTAPGGLVALITSR
YTMDAANPAARREMAQLADLVAAIRLPQDAHQRAAGTHVVTDLLIFRRREDDYEPDAN
SPGWELTELVDLDGKQVRINSYFAARPEMVCGHLAVTRGQFSDADLTVVADAPAADLL
TERLTATVEEARARGLLHAPSAPAATRPAAYVPADAHVADGHIHHDGTQFVQASNGQY
IPFAVPKTQEPELHALLELRDTAVRLLEAEAASLDYTAELDELRQQLNTTYDAYLAQY
GPLNRFTWRRTGRTNPETNEPVMARIAPPQGKFRSDPAAPVVYALEHFDPTTQHATKA
DIFTQRVVAPRTPQLGADTAEDALAICLDTHGRVDLTEIARLLGLDDQQARAALGSLV
FEDPAQDDKLVPSAEYLSGQVREKLAIARAAATDDPRFETNVAALIAVVPADLAPEDI
VARLGASWIDVRYVQQFLRELLDDSHLTVEHPYGSNWKVDGDCYGITATSTWGTEDYA
APKLAEALLEQRPIVVQDEVEVPVPGGGTTTRRITNLAKTVAAQGKADEIAERFSEWV
WEDPQRATELARVYNDRFNSLVLRSYDDVKLTLPGLALSFEPRPHQIAAVARMIHEPA
VGLYHEVGAGKTAEMAMGVMELRRLGMVRKPAVVVPNHMLEQFAREFQQLYPRAKLLA
ASSADLVKDKRRAFVARVTTGDWDAVIMTRTAFERIAMSPTAQADYLDAQLSELREAL
ERQRSEGQQGRRNTLKQLETRLLNAEEKIKERLAKDYDPAVTFEQTGIDYVVVDEAHD
FKNLHTASRIPSAAIEGSNRAADLEMKMHYLRRRHGLRVGTFATATPIANSITEAHVM
QRYLRPDLLEAAGVLDFDTWAATFGQTTAEIEISPDGGTPRLKARFAKFHNVPELLRM
WWVSGDVKTAEDLNLPRPELFARPEDGKRLPQTVIVPASAELVGFMSELAERAERVRS
RAVRPQQDNMLLISSHGRAAALDMRLVGHPMTPGESKLEAAADTIADIWRKHRDDRFH
RRDGTAHPTPGGFQIVFCDLSTPKPDEWNAYDELRALLATRGLPEERVRFIHEARNDR
EKAELFEACRNGEVAVLIGSTGKMGVGTNVQARAIALHHLDCPWRPADLAQRDGRALR
QGNAYAEIGIYRYVTEGSFDAYSWQTVARKASFIAQVMRGRLDLREIEDIGDAALSFN
EVKALAAGNPLLLDKAKADAELTRLERLERAHQQSKGRLRFTIDGYRRGIERLAAEIA
ALTTAIDARRDTRGEAFSMRVDGQTFTDRADAGKALTDRLLLALSNTAAGSERTLRGV
AELGGLSFDATLHNDRLHTGYELQISGLQGSPVTGSRTQLLESKPHGLAVRMENRLAS
LDKARTDAESAVQCAHEEIARAEAQLDAPFPHAAALEEARHVARDLDRQMAEWAAAQD
QTSDSPSTAATEPAVPETAGIDQRHPAARASAALMPPSSISRNPRPGAGQLLTSDSSS
PLSAIPAPQTACSRRRQEPRSPVPRK"
gene complement(18143..18484)
/locus_tag="PSED_RS00065"
/old_locus_tag="Psed_6897"
CDS complement(18143..18484)
/locus_tag="PSED_RS00065"
/old_locus_tag="Psed_6897"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014682997.1"
/translation="MNRYGQQAMSHWRRWLPQRYVSIPQPERFFAELGEQVESQIIEL
TQTLAGDDPPGEGYMSKLGRLNMARLQAEEIVLGELVLLPAEPGVEEGPQATLPREWA
DLAQTPEPPTR"
gene 18510..18701
/locus_tag="PSED_RS00070"
/old_locus_tag="Psed_6898"
CDS 18510..18701
/locus_tag="PSED_RS00070"
/old_locus_tag="Psed_6898"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014682998.1"
/translation="MDGVRGGGGLRLGRDAVRRDAGVDVRHRLSGTTEQEVQPELVVG
WIGPSTSAAGHGALRFCSL"
gene complement(18734..19330)
/locus_tag="PSED_RS00075"
/old_locus_tag="Psed_6899"
CDS complement(18734..19330)
/locus_tag="PSED_RS00075"
/old_locus_tag="Psed_6899"
/inference="COORDINATES: protein motif:HMM:NF027584.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF4913 domain-containing protein"
/protein_id="WP_014682999.1"
/translation="MTADEPDNLAAVVYRLAGDHAALAARVTEVEDRVDEIGSVLDDL
EAAAATAATPVDTISTIAPDLAPTEPSDDGPAAVEAGLDLRRLVDWVRENIALLIERK
LPQTGGPPYWCRKWWMHPEAIARFEALRRSWAEAVTSGEGNAMVVFFEHLDLQLGVLC
AGYGPFSGCTRGHAPAATTLGHDDPDDSYFRDFEQICG"
gene complement(19327..21201)
/locus_tag="PSED_RS00080"
/old_locus_tag="Psed_6900"
CDS complement(19327..21201)
/locus_tag="PSED_RS00080"
/old_locus_tag="Psed_6900"
/inference="COORDINATES: protein motif:HMM:NF014581.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="TraM recognition domain-containing protein"
/protein_id="WP_014683000.1"
/translation="MSTTARPPLRLHDAGAPLTLLGVLAFGFVLSLTTWLSALIAAAP
GFSVPALGSPFLRALVRGLAADSLDPMVGATGSRSAFWFAFAAMCCPIIGGAVSLTMV
VSDRLGRLGSPAASLAGRRDYRDMHGRGAQQRAVTLRPSLSERQLTPADLGIRLGRLG
KQDLYASEEDVLLEIAGPRSNKTSAMVVPAVLSAPASVITTSNKVDVYTLTVGVRSQV
GRVYVLDPQGLSGVEQTWWWNPLASIQDMADAQLLVTHFSQTIGAGHERADPYFTKGA
ERLLGQLLVAAAHGGPGHSLRDVRQWLATRSEEPVRLLKDAGFNDLAEGLQGTIEAPA
DQRGGLYETALTAISCLESEAVARYVTPPSTWTSAPRINRVEEFDPWSFVVGGHGPGG
DTFYMLTREGAGTGAPVVAALVDHLLRITAAAATARGGRIDPPVRAVLDEAANICPIR
NLPDLYSYFGSMSIQVMTFLQSYGQGVAVWGRSGMDKLWSAATIKLVGAGVHDPEFCE
HVSRLIGEHDVPTWSDQRGRGGSSTSYSTRRDRILAASDVAALPKTQAVLIAAGRRPG
LITLMPWYAERDADTISEYAAEAADQVRQAAVASLGPANPLARLLTHERQRTLGNAQQ
"
gene complement(21198..22715)
/locus_tag="PSED_RS00085"
/old_locus_tag="Psed_6901"
CDS complement(21198..22715)
/locus_tag="PSED_RS00085"
/old_locus_tag="Psed_6901"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_020498858.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014683001.1"
/translation="MSRSLRTTLSLRREAADDPVRRPERGRIDPAGKARDRPVPRSWG
WAAPHSGRAANVEAGISYQGTTQQVCGLFPFAVSSGAATPGVPVGRHMHTAEPIGLDP
SEWLREGLVSNTGMWIQGQPGIGKSTIVKRLMTGLVAFGFTGIVPGDVKGEYSALIEN
LGGRVWRIGRGLHSLNPLDAGPLKQAVAQTSGEERTRLLETVRARRRSLLEALVVIVR
RAEVTVTERRLLDVALDLAVAADHTMEPTIPDVVRVLTNPPAELLSITVCQSEQAFRR
DSRDLLNTLGLLCAGAIRGIFDRPSSVTADLDTPALSLDISALDDDEDEVVAAAMLSS
WAWAAAVIDGSAAIGRRRNVFRVQDELWRALRVAPGLVERSDRVTRLGRHRGEVSAQV
THSLDDLEALPTEADRAKARGMAARNGIMVLGGMADKELDGIRRITPLTAQERGLVRS
WAAPPTWVSGSAHPGRGKYLIKSGERMGLPVAMSLVPTELRLYDTDQAWRREPPR"
gene complement(22753..24237)
/locus_tag="PSED_RS00090"
/old_locus_tag="Psed_6902"
CDS complement(22753..24237)
/locus_tag="PSED_RS00090"
/old_locus_tag="Psed_6902"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="SCO6880 family protein"
/protein_id="WP_014683002.1"
/translation="MTGAEVPTTRTYGNWRRESGFGIGRLGPAQTMTVFGAVLVPIFC
VYISPSVALFVAVVAVLVLAAVLVRVGGQSLADVVTRSVRFTRARHAGWTELSGGMLT
DHPRKHDLPGPLAPLVPLNVDDGRGGKQGLLWDRRTGWLTAVIRVSPVGLDLADRSQA
DAWVAAWGAWLADLGYQHLVRHIAVTVDTAPSGGTTLQDYVTERIDPRAPETARSVMS
ELVASTPTTIADVDTRVSITFDPTRAVPRPADLLGAVTEVTRWLPGMESSLAMAGVAV
LGRATVEWLTGRLRIAFDPASRPDVARARNGAGSDLLLWSEAGPVRAQESWESWRHDS
GISVAWALSEAPRQAVVDRVLTPLLAPGPFPRRVTLLYEPYSAGTAATEVEREITNTQ
VRRAFAQRTRRDETQRERDDFARALQSAREEAEGAGVGKFCLYVSTTVGAEELLPAAT
ADVEQRAGQSKLRLRRLRGAQAAGFAAALGVGLNPAELARRAFR"
CONTIG join(CP002595.1:1..24346)
//