LOCUS NC_017817 36478 bp DNA linear CON 04-JUN-2023
DEFINITION Borrelia crocidurae str. Achema plasmid unnamed24, complete
sequence.
ACCESSION NC_017817
VERSION NC_017817.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN02604274
Assembly: GCF_000259345.1
KEYWORDS RefSeq.
SOURCE Borrelia crocidurae str. Achema
ORGANISM Borrelia crocidurae str. Achema
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales;
Borreliaceae; Borrelia.
REFERENCE 1 (bases 1 to 36478)
AUTHORS Elbir,H., Gimenez,G., Robert,C., Bergstrom,S., Cutler,S., Raoult,D.
and Drancourt,M.
TITLE Complete genome sequence of Borrelia crocidurae
JOURNAL J Bacteriol 194 (14), 3723-3724 (2012)
PUBMED 22740657
REFERENCE 2 (bases 1 to 36478)
AUTHORS Elbir,H., Gimenez,G., Robert,C., Raoult,D. and Drancourt,M.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2012) URMITE, 27 Boulevard Jean Moulin,
Marseille, France
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CP003450.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 06/03/2023 01:13:25
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.5
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 1,439
CDSs (total) :: 1,401
Genes (coding) :: 1,232
CDSs (with protein) :: 1,232
Genes (RNA) :: 38
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 32
ncRNAs :: 3
Pseudo Genes (total) :: 169
CDSs (without protein) :: 169
Pseudo Genes (ambiguous residues) :: 0 of 169
Pseudo Genes (frameshifted) :: 108 of 169
Pseudo Genes (incomplete) :: 83 of 169
Pseudo Genes (internal stop) :: 24 of 169
Pseudo Genes (multiple problems) :: 35 of 169
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..36478
/organism="Borrelia crocidurae str. Achema"
/mol_type="genomic DNA"
/strain="Achema"
/host="Ornithodoros sonrai"
/db_xref="taxon:1155096"
/clone="4"
/plasmid="unnamed24"
/country="Mauritania"
gene complement(<1..501)
/locus_tag="Q7M_RS06015"
/old_locus_tag="Q7M_1254"
CDS complement(<1..501)
/locus_tag="Q7M_RS06015"
/old_locus_tag="Q7M_1254"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539573.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_014696713.1"
/translation="MIMVMMVVMVMGCNSGGVAEGEGESSQSKFLKSIIGLRNEFLNV
FTSFGDMVGGILGFNAVKSDDKRSKVGEHFKTIGDGLKSTKDKLDVLAKDITSIPYTD
TTAVESIIKGTSEVISKLIVSLIKLSEVTKEDASIGNAGADGSAAAVSANVTDVNTVI
EEVRSII"
gene complement(718..1787)
/locus_tag="Q7M_RS06020"
/old_locus_tag="Q7M_1255"
/pseudo
CDS complement(718..1787)
/locus_tag="Q7M_RS06020"
/old_locus_tag="Q7M_1255"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014696700.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="variable large family protein"
gene complement(2104..>2811)
/locus_tag="Q7M_RS06030"
/old_locus_tag="Q7M_1258"
CDS complement(2104..>2811)
/locus_tag="Q7M_RS06030"
/old_locus_tag="Q7M_1258"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012537767.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_041177058.1"
/translation="TLDKIIAGAKEVSEAIGIAGDELLGNVAAAGSGGVVGDGVEKIV
KGIKGIVEVVLKGVGKADAGDSNKASDGAARTAVAGDGEAGKLFITANGAAGDDATKA
KKVAIDAAKAVGGVRGADILQAMIKSEGVAIKFAKNNDGNAGSAPKDAEVAGGIALRA
MAKGGKFANGAANADVSAAVKGAATSAVTKALDTLTIGIRRAIDLGLKSVKEAMKTNT
GATAIASDKSGSSSQNQ"
gene complement(<3060..3389)
/locus_tag="Q7M_RS06035"
CDS complement(<3060..3389)
/locus_tag="Q7M_RS06035"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539514.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_242400642.1"
/translation="MVMMLVMMVMGCNSGGVGEGEEGKNKFLQSLVNVSNEFLNVFTS
FGEMVGSVLGLSVESKKSDVGNYFKKVQETVQGIKDGLNKIVNEMKEEKNPNAAGLES
EVKKFVSE"
gene complement(3633..4656)
/locus_tag="Q7M_RS06040"
/old_locus_tag="Q7M_1260"
/pseudo
CDS complement(3633..4656)
/locus_tag="Q7M_RS06040"
/old_locus_tag="Q7M_1260"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539786.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="variable large family protein"
gene complement(5215..>6177)
/locus_tag="Q7M_RS06045"
/old_locus_tag="Q7M_1262"
CDS complement(5215..>6177)
/locus_tag="Q7M_RS06045"
/old_locus_tag="Q7M_1262"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539593.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_148264269.1"
/translation="NFLESLVKIGEGFQEIFGVFGSAIGDVLGFHAVKSTDNRSEVGK
HFENVGKGLKSTKDKLDELSKQIVSASNADTKGVEAVIQSSSEVIEKLIASVTRLAGI
TKEGNVEIGDARTDASAADGADKTSVETIIEKVKVIVETAMESGVKIEKGNAGNSVDN
GNGPKVLAGNAQAVAGDTSKLANEVAKADPWAMIDKIKNSKIKTGNLVANGNNDAGEL
STGTGAANVTAATNADLAAAVALKAMTKGGKFSQPAASEEGALKAAAVSAVNKVLGIL
DVIIKKTVESNLDKIREAVKGIKYSESGGTEASQSDATQSVVTK"
gene complement(6570..7667)
/locus_tag="Q7M_RS06050"
/old_locus_tag="Q7M_1263"
CDS complement(6570..7667)
/locus_tag="Q7M_RS06050"
/old_locus_tag="Q7M_1263"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014687021.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_148264268.1"
/translation="MNIEEIRGIRGIKGKEELGNREERREGRVKGRILMVVMMVMGCN
SGGVKDPEKVFLSDMVNLGKGFLDVFVSFGDMITGTLGIKVETKKSEIGGYFSRIENT
MKTVKVKLGEILEKNGDYPKVKEKVEEFIGKISKIEEGAKEAALGASGEDKIGGATNA
GQDAVAADKNSVISLVKGIKTIVGIVLRDGEGSADVSKTGEDDKKDIGKLFDGTKDEA
KEENIAKAVASIGAVSGADMLQAIVKSKENPSVYDTDGIEKAGDAAEIAVAKAVAGKK
EIKEGAAKKDAVIAGGIALRGMAKEGKFAAKNGDAKDANALNGAVASAVNKVLSTLVI
AIRNKVDEGLKEINKVLGEIKQGEISEAKTN"
gene complement(7887..8870)
/locus_tag="Q7M_RS06055"
/old_locus_tag="Q7M_1264"
CDS complement(7887..8870)
/locus_tag="Q7M_RS06055"
/old_locus_tag="Q7M_1264"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539765.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_014696723.1"
/translation="MMGCNSGGVKDPEKVFLSDIANLGKGFLEVFVSFGDMITGTLGI
KADTKKSDIGKYFSDIEKTMNSVKEKLQEEVSKNGQYEKVKTVVDQFITSVVDKIAEG
AKESAKGAIGGDAIGNAVKEGQDAVAADTTSVNLLVKGIRTIVGVVLKENEGDEKADK
TIDSDKKKVGQLFAKKNDDRAQDTEAAKASASVGAVSGADILQAIAKSSEAVNVDEID
KAKNAAEIAIAPAKDEKKEVAVESAKKDAVIAAGIALRAMAKDGRFAAKQDASDKYAN
AVNGAVASAVNKVLSTLVIAIRNRVDEGLKGISEVLGEIKQGEGVAAKVIK"
gene complement(9141..10181)
/locus_tag="Q7M_RS06060"
/old_locus_tag="Q7M_1265"
CDS complement(9141..10181)
/locus_tag="Q7M_RS06060"
/old_locus_tag="Q7M_1265"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539593.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_014696724.1"
/translation="MMMVVGCNSGGVLGGEGKVDLAKKNSFLESLVKIGEGFQEIFVG
FGSAVGDVLGFNVIKSDDNRSKVREHFKTIGDGLKNTKDKLDKLSKQIVSTFNADTKG
VEAVIQGSSEVIGRLIDSLTKLAGAVGSISIGDNTAGAAVVSEEASVKTVIEEVKAIV
EIAENSKVKIGKGIYGGEVTAGGANTNAPAVLSANAAAGAGAGSKLADEITKADSWAM
IDKIKNAKTKTGNLDANASNGAGELATGTPSDANGAKAATNADLAAAVALKAMTKSGK
FSAAVADIGIVKAAAASAVNKVLGILDVIIIQAVNLELDKVKEAVKGIKYSETPESNV
PEVGTIQTPSTK"
gene complement(10500..>11326)
/locus_tag="Q7M_RS06065"
/old_locus_tag="Q7M_1266"
CDS complement(10500..>11326)
/locus_tag="Q7M_RS06065"
/old_locus_tag="Q7M_1266"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539703.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=3
/transl_table=11
/product="variable large family protein"
/protein_id="WP_041177059.1"
/translation="TKKSDIGKYFTDIEKTMISVKEKLQAEVAKNGNYGRLKEVVEQF
IIGTLDKISRGAKEASKGAIGSETLGNAVKNEDAAPAEVSSVNALVEGIKTIVDVVLK
DNGRADANVTGEEDKKDIGKLFSKAGDNGTEAEAAKANASIEAVSGADILQAIASSAI
AEAGKDIDQAKDAAEIAIAKNSGNTKETKKKDAVIAGGIALRAMAKNGKLAAKDEDKA
TFAINGAAASAVGKTLSTLIIAIRNTVDSGLKKINEILATIKQEDKGAEAASGQQS"
gene complement(<12076..12318)
/locus_tag="Q7M_RS08285"
CDS complement(<12076..12318)
/locus_tag="Q7M_RS08285"
/inference="COORDINATES: protein motif:HMM:NF013114.2"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_277913132.1"
/translation="MKGIVEVAKGEGVKEASASDVTLGQASIGADAKNGAKVLAAGAD
AGAAVGEKAALIVSSVRGEEMLASIVKSTEGDASGTI"
gene complement(12514..12711)
/locus_tag="Q7M_RS08290"
CDS complement(12514..12711)
/locus_tag="Q7M_RS08290"
/inference="COORDINATES: protein motif:HMM:NF013114.2"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_277913133.1"
/translation="MLEVGRIAENAFYAFIELMSDTLGLKVTKDTKRSDVAGYFNSLG
GKLLESIRRIRKSSKQDNIRC"
gene complement(12949..>13899)
/locus_tag="Q7M_RS06075"
/old_locus_tag="Q7M_1268"
CDS complement(12949..>13899)
/locus_tag="Q7M_RS06075"
/old_locus_tag="Q7M_1268"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539553.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_148264270.1"
/translation="AIGEGFQGIFGVFGSAIGDVLGFNVVKVGDKKSKVGEHFKKVGE
GLATTKNKLKELSSEISGAKNVEGSTIKVIEDAIKGASDVFEQLIVATNKLADVSREA
GDTNIGDSANATPGAADKAGVEVIIAEVKSIIGAAEKAGIKIDAGNAGGQVTAANATD
APAVLGGHNGNATEGAGPKLAAEVSKADPWAMIDKIKNAKASAPAAFAGNDNEVGVLA
ASNANAAAVNNGAKTNADLAAAVALKAMIKGGKFSAVQNDSEAIKAAAASAVNKVLGI
LDVIIRKTVISNLDKIREAIKGIKYSESSEIEANQSVVTK"
gene complement(<15561..15917)
/locus_tag="Q7M_RS06080"
/pseudo
CDS complement(<15561..15917)
/locus_tag="Q7M_RS06080"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539230.1"
/note="incomplete; too short partial abutting assembly
gap; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="PBSX family phage terminase large subunit"
gene complement(15928..16269)
/locus_tag="Q7M_RS06085"
/old_locus_tag="Q7M_1269"
CDS complement(15928..16269)
/locus_tag="Q7M_RS06085"
/old_locus_tag="Q7M_1269"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539544.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF603 domain-containing protein"
/protein_id="WP_014696728.1"
/translation="MSRVKKSFDDYIVYFNEDKLSYTQISKETGVSRANLCKMRRRWK
SREISNLEEQSKVTIKEEINNEYNEEINNKLCELDEVKRAKELKKMELYYQAMRKLKA
TDFESQVKFKI"
gene 16440..17147
/locus_tag="Q7M_RS06090"
/old_locus_tag="Q7M_1270"
CDS 16440..17147
/locus_tag="Q7M_RS06090"
/old_locus_tag="Q7M_1270"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539602.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014696729.1"
/translation="MNKNKSILILYITLFLYGCDTDKFSNTLKTQSSTTLTTEQKLTT
QKPNVTMQKSKIYSSQKPILTAEEKDKFELLKYALKMDLKAYQKNYTNPKAKKVANIY
SNIINWISNNLHIQEQKDLINAFSHVYTFIKNKIDNNPNMNIMQYIESAYYNFQDDEY
KKAHTYDSKLYGNLHGEKHNSITMFFYLIKLNAIERQTNLQDNEEFYKNAIQKIKNEL
QDKTSDSYKHSLALSKD"
gene 17312..>17537
/locus_tag="Q7M_RS06095"
/pseudo
CDS 17312..>17537
/locus_tag="Q7M_RS06095"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539731.1"
/note="incomplete; too short partial abutting assembly
gap; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene complement(19304..20176)
/locus_tag="Q7M_RS06100"
/old_locus_tag="Q7M_1272"
CDS complement(19304..20176)
/locus_tag="Q7M_RS06100"
/old_locus_tag="Q7M_1272"
/inference="COORDINATES: protein motif:HMM:NF016302.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ERF family protein"
/protein_id="WP_242400639.1"
/translation="MNINSNNITKTNIQEMKINNKNTTSNQKRIDFLKNLKTLRMSLN
GVNKNLNDYGYKYQDFNEIVREVKNVIKEHDLDIDFVQYPTTKSIDGNLVGVVTTTFY
SPLSGYEYSFDTSTHIKELKSIGIKSQNTWPQLVGSAITYFKRYVLVAYLSIESEVDT
DASNLDIEQRNNKGQIENNTCNNKDNNASKPSVDVIKSKTIESRVQNKQVVNTGHSKS
EVKHNVNMNKFNYYQNLLITSKNMYNFLSDKPFSSLSEINDYLESVKSGDDSKLLEYF
NKNKMLKSMSIGVI"
gene complement(20605..21153)
/locus_tag="Q7M_RS06105"
/old_locus_tag="Q7M_1274"
CDS complement(20605..21153)
/locus_tag="Q7M_RS06105"
/old_locus_tag="Q7M_1274"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010258133.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="chromosome replication/partitioning protein"
/protein_id="WP_014696733.1"
/translation="MEIEINKRDLSDSVKKGNSIEQKIRHYNSLKEKLKVNFKKEIHN
KIETMKILKEIKDNEYYRLDNYRTFEDFSQEYRLARTQVYQYLRLANAIEEGIIEETF
LIKNGINDSLAFLQDKHGKRIKKSKINPIKPLRFQLKNQESYDYYKKNAKLTSFILDE
LFRDKKDWLEEFVRRFKNLRDN"
gene complement(21240..21980)
/locus_tag="Q7M_RS06110"
/old_locus_tag="Q7M_1275"
CDS complement(21240..21980)
/locus_tag="Q7M_RS06110"
/old_locus_tag="Q7M_1275"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014695375.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ParA family protein"
/protein_id="WP_014696734.1"
/translation="MDKKKPKVITIASIKGGVGKSTSAIILSTLLSQKYRLLLIDIDT
QASTTSYFFKKIKEQNFELLNKNIYEILKGNIDINNSIVNVGNNLDLIPSYLTLHNFN
SESMPFKEVKLQEQLTFLEVNYDYIIIDTNPSLDITLINALVVTNYILVPITAEKWSI
ESLELLEFFVKKLNLTRIPIYLINTRFRKNNTHKYLLNLLIKRNNFLGIISEREDLNK
RIARNMGFDLTKDYIYEYVTALEKFLAN"
gene complement(21956..22519)
/locus_tag="Q7M_RS06115"
/old_locus_tag="Q7M_1276"
CDS complement(21956..22519)
/locus_tag="Q7M_RS06115"
/old_locus_tag="Q7M_1276"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539728.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF226 domain-containing protein"
/protein_id="WP_014696735.1"
/translation="MDSVLERLQERKTEISEKEKQKKIFIKIEKFNNRTLYHTKVMMD
FCAFGINKRQTHKFFIAFRKLFNREKIEWFSLFAVKDDDKFLGIFYGYRKPIQNIVTR
YEENGVMKAYTFSKVYYIEFRFHKGSVFCYIKGISRLLKNDKINTKYYYSLIEIFLTL
EKEIYEFYDKKLPSGGIITKWIRKNRK"
gene complement(<23407..23876)
/locus_tag="Q7M_RS06120"
CDS complement(<23407..23876)
/locus_tag="Q7M_RS06120"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539836.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid maintenance protein"
/protein_id="WP_041177062.1"
/translation="MKNFKKYTNKYQHKLIVLISTLNYVNSKFKQYNQNKILYYFNNN
LNNNGQKKATLKTLQSYLYKLEKEFHVTSNYYRHLGENCGTEIHYKLRFSKKICHYKI
NRHFRNKKEDRFQQRANLYHQQTCTNNGSLKKNGSAEKWECINNNSNNKNNKKK"
gene 26224..26481
/locus_tag="Q7M_RS06125"
/old_locus_tag="Q7M_1279"
CDS 26224..26481
/locus_tag="Q7M_RS06125"
/old_locus_tag="Q7M_1279"
/inference="COORDINATES: protein motif:HMM:NF015173.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF261 family protein"
/protein_id="WP_014696738.1"
/translation="MRINCYILNLCRILSFFGIKRDVRVEDKDYKCLEDEFEISEVKT
KNNIGSHFMATNNTEVLYDPLFLKDRGQEYHLKSKRIFRKI"
gene complement(28573..29008)
/locus_tag="Q7M_RS06130"
/old_locus_tag="Q7M_1283"
/pseudo
CDS complement(28573..29008)
/locus_tag="Q7M_RS06130"
/old_locus_tag="Q7M_1283"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539731.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="Mlp family lipoprotein"
gene complement(29174..29869)
/locus_tag="Q7M_RS06135"
/old_locus_tag="Q7M_1284"
CDS complement(29174..29869)
/locus_tag="Q7M_RS06135"
/old_locus_tag="Q7M_1284"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539612.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014696743.1"
/translation="MKKNKNILILCIILLYNCNANKTPSQRMPDSVQTTKSQDNLLKP
QDPESKSQKHAHITLTTEEKMKFEIFIHALDISKKDKFAFSTKMKQDINQKVQNLLNK
YDKFRSWILDDKHIQEQKELSKAFNYAYNRILYNKLKRSDNDQTTMQYIEGAFYYYLY
DQYKDNHHYDGKLYGSTNPGFPNNYVSSFFEHFINTVIAKYDTNEKIFQAIKNELEDK
NSALYAKTLNMLS"
gene 30021..>30188
/locus_tag="Q7M_RS07300"
CDS 30021..>30188
/locus_tag="Q7M_RS07300"
/inference="COORDINATES: protein motif:HMM:NF016524.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF603 domain-containing protein"
/protein_id="WP_148264271.1"
/translation="MNKVKKSFDDYIVYFNEGKLSDAQISKEMGVSRANVCKMRRRWE
SRESNNLEEHPK"
gene 30599..30814
/locus_tag="Q7M_RS08165"
/old_locus_tag="Q7M_1285"
CDS 30599..30814
/locus_tag="Q7M_RS08165"
/old_locus_tag="Q7M_1285"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014696744.1"
/translation="MELKSYNKEIKVLESKIERLREGINNEDEQDLNNKLCELDEVKR
AKELKKMELYYQAMLKLKFKGLCCEYI"
gene 30801..30947
/locus_tag="Q7M_RS08170"
/old_locus_tag="Q7M_1286"
CDS 30801..30947
/locus_tag="Q7M_RS08170"
/old_locus_tag="Q7M_1286"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014696745.1"
/translation="MNIYDLPLFKKMQREYKREFGVDIASFVKPKPVVVDFKSFENRF
LNKK"
gene 31028..>31567
/locus_tag="Q7M_RS06145"
CDS 31028..>31567
/locus_tag="Q7M_RS06145"
/inference="COORDINATES: protein motif:HMM:TIGR01547.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="phage terminase large subunit"
/protein_id="WP_242400641.1"
/translation="MACYLFLKTLLKNRHLYRKGTNNFILGNSQKVLEINVTGQFKKL
ANMLKIPFVPKYSNRSYFEINSLRVNLYGGDKIRDFGGSNSVVIYVNEATTLHKETLK
EALKRLRIKPEFIVFDTNPDHPEHYFKTDYIDNNTIYSTYNFTTYDNEEISKEFIKTQ
EELYKDFSTYKASVLLGEWV"
gene <32819..33335
/locus_tag="Q7M_RS06150"
/old_locus_tag="Q7M_1287"
CDS <32819..33335
/locus_tag="Q7M_RS06150"
/old_locus_tag="Q7M_1287"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014683279.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=2
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_041177063.1"
/translation="FNFKLEILERGLKADIRELDTKIDTVENNLNIKMDIKFTELDNK
IDTVENNLNNKIDKVRDELKSDIKELDNKIDTVENNLNNKIDAKFTELDNKIDVKFNE
LDNKIDTVRKDMELNKMELDTKIDIKFKELDTKIDKFASDVKGTFKLHAWMFGTIITL
TIGILLTLIFK"
gene 33907..35046
/locus_tag="Q7M_RS06155"
/old_locus_tag="Q7M_1289"
CDS 33907..35046
/locus_tag="Q7M_RS06155"
/old_locus_tag="Q7M_1289"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012539547.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_014696748.1"
/translation="MKEKKELGEIGRREERREGREKRRILMVMMVVMMVMGCNSGGVG
GGESGENKFLKSLVGLSNEFINVFTSFGDMVGSVLGLKADSKKSDVGNYFKTVQGTVE
GVKTGLNKIVADMKKESNPNAAATETAVNKLVTETLDKIITGAKTASEAIGGDASDFI
GNVAAGGNNDSAGVSGSEIDSLVKGIKGIVDVVLKGIGKADAGDGKKADALGARGDNA
GDVGKLFGNTGNNGGIDSADNAKKAGADAAKAVGAVTGADILQAVVKDGGDASKLAAN
SPTSDVAGVSQNAKDGTIAGGIALRAMAKGGKFANDNTAANVDVVTAVKGAAVSAVTK
ALDTLTVAIRSTIDEGLKSVKEAMKTNINVTSVASENSGSGGQNQ"
gene 35511..>36478
/locus_tag="Q7M_RS06160"
/old_locus_tag="Q7M_1290"
CDS 35511..>36478
/locus_tag="Q7M_RS06160"
/old_locus_tag="Q7M_1290"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014687008.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variable large family protein"
/protein_id="WP_014696749.1"
/translation="MKEKKELGEIGRREERREGREKRRILMVMMVVMMVMGCNSGGVK
DPEKVFLSEMVNLGKGFLDVFVSFGDMITGTLGIKAETKKSDIGAYFTKIENTMKIVK
GKLSKILEEHGSYEKVKGKVEEFIGEISKIEEGAKEAALGASGEDKIGGATSAGQAAV
AADKNSVISLVKGIKAIVGIVLKKDEGDAGATKTGDDKKDVGKLFVNDAGKADAKEEN
IAKAAASIGAISGSDILRAIEKSKEDPKDYVNDGIEKAGDAAEIAIAPVVADKKEIKE
ESAKKDAVIAGGIALRGMAKGGKLAANNEEKSANAVNGAVASAVNKV"
CONTIG join(CP003450.1:1..36478)
//
