LOCUS NC_018490 8574 bp DNA circular CON 18-MAR-2023
DEFINITION Bacillus thuringiensis HD-771 plasmid p08, complete sequence.
ACCESSION NC_018490
VERSION NC_018490.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN02603565
Assembly: GCF_000292455.1
KEYWORDS RefSeq.
SOURCE Bacillus thuringiensis HD-771
ORGANISM Bacillus thuringiensis HD-771
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus;
Bacillus cereus group.
REFERENCE 1 (bases 1 to 8574)
AUTHORS Doggett,N., Teshima,H., Bruce,D., Detter,J.C., Johnson,S.L. and
Han,C.
TITLE Direct Submission
JOURNAL Submitted (09-AUG-2012) BioScience Division, Los Alamos National
Laboratory, PO Box 1663 M888, Los Alamos, NM 87544, USA
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CP003760.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 12/29/2022 02:15:54
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.4
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 6,723
CDSs (total) :: 6,583
Genes (coding) :: 6,354
CDSs (with protein) :: 6,354
Genes (RNA) :: 140
rRNAs :: 12, 12, 12 (5S, 16S, 23S)
complete rRNAs :: 12, 12, 12 (5S, 16S, 23S)
tRNAs :: 99
ncRNAs :: 5
Pseudo Genes (total) :: 229
CDSs (without protein) :: 229
Pseudo Genes (ambiguous residues) :: 0 of 229
Pseudo Genes (frameshifted) :: 120 of 229
Pseudo Genes (incomplete) :: 108 of 229
Pseudo Genes (internal stop) :: 64 of 229
Pseudo Genes (multiple problems) :: 51 of 229
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..8574
/organism="Bacillus thuringiensis HD-771"
/mol_type="genomic DNA"
/strain="HD-771"
/db_xref="taxon:1218175"
/plasmid="p08"
gene complement(join(8528..8574,1..259))
/locus_tag="BTG_RS32915"
/old_locus_tag="BTG_33740"
CDS complement(join(8528..8574,1..259))
/locus_tag="BTG_RS32915"
/old_locus_tag="BTG_33740"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014893149.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_014893149.1"
/translation="MENETIQEKNKRRRVPVRFSEITAQKLDDMSDRYGMSVSALVNF
IVGQWLDNNYDIKDYTREKMIPAMMENVEPQMESMLQNPLIAGMFKEMAEQFVKASK"
gene complement(527..1048)
/locus_tag="BTG_RS32920"
/old_locus_tag="BTG_33745"
CDS complement(527..1048)
/locus_tag="BTG_RS32920"
/old_locus_tag="BTG_33745"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000234812.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF3967 domain-containing protein"
/protein_id="WP_000260422.1"
/translation="MVVIYQTTKQAAQTLNINHTTFKKYYGMFERYNGYNFLRDSKGQ
VMFSEYDLEVFKRLLSVKAEPGRTIEESCRVVGEEFGISNKNQVITDISPENGGDNKA
IEELKELILMQNNKIDELTIKLNEQSNQNKMIETSVGDRDQQLVRLMKEMLEVKKMVA
ASNKKKWWHFFKR"
gene complement(3262..3516)
/locus_tag="BTG_RS32930"
/old_locus_tag="BTG_33750"
CDS complement(3262..3516)
/locus_tag="BTG_RS32930"
/old_locus_tag="BTG_33750"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000888627.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000888628.1"
/translation="MLEDKFLESKIKRLINQNVVVFTDDDEIIEGVLLDKDTGEERLF
EVLRKIWGKNFAWFGEGIYIQCEDTVTFRDYDEVDNIFKK"
gene 3627..3767
/locus_tag="BTG_RS36350"
/old_locus_tag="BTG_33755"
CDS 3627..3767
/locus_tag="BTG_RS36350"
/old_locus_tag="BTG_33755"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000130115.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000130115.1"
/translation="MTDKKERVEMRIPQSILKKVDEYKEENGISTRTATILELIRKGL
NK"
gene complement(3800..4819)
/locus_tag="BTG_RS32935"
/old_locus_tag="BTG_33760"
CDS complement(3800..4819)
/locus_tag="BTG_RS32935"
/old_locus_tag="BTG_33760"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000014169.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF3895 domain-containing protein"
/protein_id="WP_014893150.1"
/translation="MYGTYLDLEDRDKIMGSLSDEQQDYLHNFLKRGKRTTFASVLAR
LKGDGLEENAEHISTQWMFIEYIDAGKVSNEHPCECGRPLRYQYIVKNLVTNKILKFG
KDHFERHTGLPSSIVKAVLKGMYKIDCELDEILNKISSGWSLFENLGVSSIPDDLIMP
IDIREHLELDLPLLDRQVMRLKGDLRSYNSFKKNIVEKNDSVDFEINEGKEEGQASLF
DEDIVFGFDLDDDNVQTVRSQPVKVKPVSIEKNISYQFLSFVEQEFILQFIQNVNSVS
VRQLCEFMIKEVGSLDKRYLTGKPHIYVHVCSYLDFLVTQGKLSYIENLDYIDRIYYI
ESDIS"
gene complement(4949..7327)
/locus_tag="BTG_RS32940"
/old_locus_tag="BTG_33765"
CDS complement(4949..7327)
/locus_tag="BTG_RS32940"
/old_locus_tag="BTG_33765"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001162470.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="AAA family ATPase"
/protein_id="WP_001162471.1"
/translation="MALDVSKCGKKTAHLKSKETGKHYAKSLTCNKLECPRCQPVIAA
HIQKMVRFYSQRERLFFFNTLTSTDGINDLEKIFKNIRKFLSNEFTIEGYMKRKKVSY
EKAVKWYEKKKEKTILSDVEVELFRISRYDAVISVAKRKKVYYKNLSSDDKAKFKDIY
SDLIYESFLYIYDCKCKDQSLRDELYNNISKRFEENEFVDFKFIRVLEFHKSGQPHYH
FLSNRYVPHTLLKKLTVEGVSEVYDNTYIVEDALRKNPDLTYDSVDTDIVSNYVSKIT
NYVTKDTIDTFLTMQSDGDISKKLISSSNSIKIFKEKDEKDLKYIKLGVFDYQLNSSS
YEIPSNVGDVYESVEGFIKEHSKMLRDEHAIRLHHLVRELDLSDEIKYSYMIHERLLQ
MSSMDFLVERLGDYRTEGLTFDQVRLMRSFIDNRITLLLGRAGTGKTYTLVNLLNRLK
PDPNKTIVCTYTGKASSRIRELFREYDLQDYKSLTIHKTCSSNFNSKFFKNEYNIIDC
AYLIIDEVSMIPREILAKLLQAVPSHVKIIFAGDDAQLPPVNDTSIIPELEALDFVNT
VRLTQVFRSEDAVLGQAYNVLNRKSIDYNLFGEDMKELVLKLISDGYQILTNTRKLAK
DINMIVQAEKKDITLCFDDFKYDLNDRVMIIANSSARNVSNGDTGKIVDYDECGVCVR
LDLEDREVFYKYEDTEEIVPAYAFTVHKSQGSEYENVAVFVDSQPKLNTNNLLYTGIT
RAKKNIKVYVPDEMVLSTMIKRVPEPVSNITLNNVFGLVNGILDIKKTSSMG"
gene complement(7355..7708)
/locus_tag="BTG_RS32945"
/old_locus_tag="BTG_33770"
CDS complement(7355..7708)
/locus_tag="BTG_RS32945"
/old_locus_tag="BTG_33770"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_016090437.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000254575.1"
/translation="MVSPSCLSGIVSSSLGKFVLVSCIDSSVHLGLLVPSDLAKKTSF
FKVENDFGFSLDDLGVYSDQMLFIFTLESVLISIPYDQVDRVITFTGSCIDHYNKFYV
EPNEFLNEFKLYMSV"
gene complement(8111..8239)
/locus_tag="BTG_RS36795"
CDS complement(8111..8239)
/locus_tag="BTG_RS36795"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_269744666.1"
/translation="MRNIKEFKEIARKNPGYYVVVSPSENDTFEGVLLSVFLARKL"
gene complement(8271..8513)
/locus_tag="BTG_RS32955"
/old_locus_tag="BTG_33775"
CDS complement(8271..8513)
/locus_tag="BTG_RS32955"
/old_locus_tag="BTG_33775"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000342926.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000391897.1"
/translation="MEELLTKILEKLDDVDKKVDKVSGDVQELKQELKAHRMEIDDNF
TKLYKLVEEKDVEIDVLNKRVFKNETTVEKLKRQKH"
CONTIG join(CP003760.1:1..8574)
//