GenomeNet

Database: RefSeq
Entry: NC_018490
LinkDB: NC_018490
Original site: NC_018490 
LOCUS       NC_018490               8574 bp    DNA     circular CON 18-MAR-2023
DEFINITION  Bacillus thuringiensis HD-771 plasmid p08, complete sequence.
ACCESSION   NC_018490
VERSION     NC_018490.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02603565
            Assembly: GCF_000292455.1
KEYWORDS    RefSeq.
SOURCE      Bacillus thuringiensis HD-771
  ORGANISM  Bacillus thuringiensis HD-771
            Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus;
            Bacillus cereus group.
REFERENCE   1  (bases 1 to 8574)
  AUTHORS   Doggett,N., Teshima,H., Bruce,D., Detter,J.C., Johnson,S.L. and
            Han,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2012) BioScience Division, Los Alamos National
            Laboratory, PO Box 1663 M888, Los Alamos, NM 87544, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CP003760.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/29/2022 02:15:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.4
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,723
            CDSs (total)                      :: 6,583
            Genes (coding)                    :: 6,354
            CDSs (with protein)               :: 6,354
            Genes (RNA)                       :: 140
            rRNAs                             :: 12, 12, 12 (5S, 16S, 23S)
            complete rRNAs                    :: 12, 12, 12 (5S, 16S, 23S)
            tRNAs                             :: 99
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 229
            CDSs (without protein)            :: 229
            Pseudo Genes (ambiguous residues) :: 0 of 229
            Pseudo Genes (frameshifted)       :: 120 of 229
            Pseudo Genes (incomplete)         :: 108 of 229
            Pseudo Genes (internal stop)      :: 64 of 229
            Pseudo Genes (multiple problems)  :: 51 of 229
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..8574
                     /organism="Bacillus thuringiensis HD-771"
                     /mol_type="genomic DNA"
                     /strain="HD-771"
                     /db_xref="taxon:1218175"
                     /plasmid="p08"
     gene            complement(join(8528..8574,1..259))
                     /locus_tag="BTG_RS32915"
                     /old_locus_tag="BTG_33740"
     CDS             complement(join(8528..8574,1..259))
                     /locus_tag="BTG_RS32915"
                     /old_locus_tag="BTG_33740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014893149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_014893149.1"
                     /translation="MENETIQEKNKRRRVPVRFSEITAQKLDDMSDRYGMSVSALVNF
                     IVGQWLDNNYDIKDYTREKMIPAMMENVEPQMESMLQNPLIAGMFKEMAEQFVKASK"
     gene            complement(527..1048)
                     /locus_tag="BTG_RS32920"
                     /old_locus_tag="BTG_33745"
     CDS             complement(527..1048)
                     /locus_tag="BTG_RS32920"
                     /old_locus_tag="BTG_33745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000234812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3967 domain-containing protein"
                     /protein_id="WP_000260422.1"
                     /translation="MVVIYQTTKQAAQTLNINHTTFKKYYGMFERYNGYNFLRDSKGQ
                     VMFSEYDLEVFKRLLSVKAEPGRTIEESCRVVGEEFGISNKNQVITDISPENGGDNKA
                     IEELKELILMQNNKIDELTIKLNEQSNQNKMIETSVGDRDQQLVRLMKEMLEVKKMVA
                     ASNKKKWWHFFKR"
     gene            complement(3262..3516)
                     /locus_tag="BTG_RS32930"
                     /old_locus_tag="BTG_33750"
     CDS             complement(3262..3516)
                     /locus_tag="BTG_RS32930"
                     /old_locus_tag="BTG_33750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000888627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000888628.1"
                     /translation="MLEDKFLESKIKRLINQNVVVFTDDDEIIEGVLLDKDTGEERLF
                     EVLRKIWGKNFAWFGEGIYIQCEDTVTFRDYDEVDNIFKK"
     gene            3627..3767
                     /locus_tag="BTG_RS36350"
                     /old_locus_tag="BTG_33755"
     CDS             3627..3767
                     /locus_tag="BTG_RS36350"
                     /old_locus_tag="BTG_33755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000130115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000130115.1"
                     /translation="MTDKKERVEMRIPQSILKKVDEYKEENGISTRTATILELIRKGL
                     NK"
     gene            complement(3800..4819)
                     /locus_tag="BTG_RS32935"
                     /old_locus_tag="BTG_33760"
     CDS             complement(3800..4819)
                     /locus_tag="BTG_RS32935"
                     /old_locus_tag="BTG_33760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000014169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3895 domain-containing protein"
                     /protein_id="WP_014893150.1"
                     /translation="MYGTYLDLEDRDKIMGSLSDEQQDYLHNFLKRGKRTTFASVLAR
                     LKGDGLEENAEHISTQWMFIEYIDAGKVSNEHPCECGRPLRYQYIVKNLVTNKILKFG
                     KDHFERHTGLPSSIVKAVLKGMYKIDCELDEILNKISSGWSLFENLGVSSIPDDLIMP
                     IDIREHLELDLPLLDRQVMRLKGDLRSYNSFKKNIVEKNDSVDFEINEGKEEGQASLF
                     DEDIVFGFDLDDDNVQTVRSQPVKVKPVSIEKNISYQFLSFVEQEFILQFIQNVNSVS
                     VRQLCEFMIKEVGSLDKRYLTGKPHIYVHVCSYLDFLVTQGKLSYIENLDYIDRIYYI
                     ESDIS"
     gene            complement(4949..7327)
                     /locus_tag="BTG_RS32940"
                     /old_locus_tag="BTG_33765"
     CDS             complement(4949..7327)
                     /locus_tag="BTG_RS32940"
                     /old_locus_tag="BTG_33765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001162470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="WP_001162471.1"
                     /translation="MALDVSKCGKKTAHLKSKETGKHYAKSLTCNKLECPRCQPVIAA
                     HIQKMVRFYSQRERLFFFNTLTSTDGINDLEKIFKNIRKFLSNEFTIEGYMKRKKVSY
                     EKAVKWYEKKKEKTILSDVEVELFRISRYDAVISVAKRKKVYYKNLSSDDKAKFKDIY
                     SDLIYESFLYIYDCKCKDQSLRDELYNNISKRFEENEFVDFKFIRVLEFHKSGQPHYH
                     FLSNRYVPHTLLKKLTVEGVSEVYDNTYIVEDALRKNPDLTYDSVDTDIVSNYVSKIT
                     NYVTKDTIDTFLTMQSDGDISKKLISSSNSIKIFKEKDEKDLKYIKLGVFDYQLNSSS
                     YEIPSNVGDVYESVEGFIKEHSKMLRDEHAIRLHHLVRELDLSDEIKYSYMIHERLLQ
                     MSSMDFLVERLGDYRTEGLTFDQVRLMRSFIDNRITLLLGRAGTGKTYTLVNLLNRLK
                     PDPNKTIVCTYTGKASSRIRELFREYDLQDYKSLTIHKTCSSNFNSKFFKNEYNIIDC
                     AYLIIDEVSMIPREILAKLLQAVPSHVKIIFAGDDAQLPPVNDTSIIPELEALDFVNT
                     VRLTQVFRSEDAVLGQAYNVLNRKSIDYNLFGEDMKELVLKLISDGYQILTNTRKLAK
                     DINMIVQAEKKDITLCFDDFKYDLNDRVMIIANSSARNVSNGDTGKIVDYDECGVCVR
                     LDLEDREVFYKYEDTEEIVPAYAFTVHKSQGSEYENVAVFVDSQPKLNTNNLLYTGIT
                     RAKKNIKVYVPDEMVLSTMIKRVPEPVSNITLNNVFGLVNGILDIKKTSSMG"
     gene            complement(7355..7708)
                     /locus_tag="BTG_RS32945"
                     /old_locus_tag="BTG_33770"
     CDS             complement(7355..7708)
                     /locus_tag="BTG_RS32945"
                     /old_locus_tag="BTG_33770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016090437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000254575.1"
                     /translation="MVSPSCLSGIVSSSLGKFVLVSCIDSSVHLGLLVPSDLAKKTSF
                     FKVENDFGFSLDDLGVYSDQMLFIFTLESVLISIPYDQVDRVITFTGSCIDHYNKFYV
                     EPNEFLNEFKLYMSV"
     gene            complement(8111..8239)
                     /locus_tag="BTG_RS36795"
     CDS             complement(8111..8239)
                     /locus_tag="BTG_RS36795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_269744666.1"
                     /translation="MRNIKEFKEIARKNPGYYVVVSPSENDTFEGVLLSVFLARKL"
     gene            complement(8271..8513)
                     /locus_tag="BTG_RS32955"
                     /old_locus_tag="BTG_33775"
     CDS             complement(8271..8513)
                     /locus_tag="BTG_RS32955"
                     /old_locus_tag="BTG_33775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000342926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000391897.1"
                     /translation="MEELLTKILEKLDDVDKKVDKVSGDVQELKQELKAHRMEIDDNF
                     TKLYKLVEEKDVEIDVLNKRVFKNETTVEKLKRQKH"
CONTIG      join(CP003760.1:1..8574)
//
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