LOCUS NC_021730 8721 bp DNA circular CON 12-MAR-2023
DEFINITION Acinetobacter baumannii BJAB0868 plasmid p1BJAB0868, complete
sequence.
ACCESSION NC_021730
VERSION NC_021730.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN02604246
Assembly: GCF_000419425.1
KEYWORDS RefSeq.
SOURCE Acinetobacter baumannii BJAB0868
ORGANISM Acinetobacter baumannii BJAB0868
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
complex.
REFERENCE 1 (bases 1 to 8721)
AUTHORS Zhu,L., Yan,Z., Zhang,Z., Zhou,Q., Zhou,J., Wakeland,E.K., Fang,X.,
Xuan,Z., Shen,D. and Li,Q.Z.
TITLE Complete genome analysis of three Acinetobacter baumannii clinical
isolates in China for insight into the diversification of drug
resistance elements
JOURNAL PLoS One 8 (6), e66584 (2013)
PUBMED 23826102
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8721)
AUTHORS Xuan,Z., Zhu,L., Shen,D., Yan,Z., Zhang,Z., Fang,X., Zhou,J. and
Li,Q.Z.
TITLE Direct Submission
JOURNAL Submitted (18-OCT-2012) Molecular and Cell Biology, University of
Texas at Dallas, 800 W Campbell Road, Richardson, TX 75080, USA
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CP003850.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Assembly-Data-START##
Assembly Method :: VELVET v. 1.0.18
Sequencing Technology :: Illumina
##Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 03/12/2023 13:48:14
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.4
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 3,849
CDSs (total) :: 3,752
Genes (coding) :: 3,654
CDSs (with protein) :: 3,654
Genes (RNA) :: 97
rRNAs :: 6, 6, 6 (5S, 16S, 23S)
complete rRNAs :: 6, 6, 6 (5S, 16S, 23S)
tRNAs :: 75
ncRNAs :: 4
Pseudo Genes (total) :: 98
CDSs (without protein) :: 98
Pseudo Genes (ambiguous residues) :: 0 of 98
Pseudo Genes (frameshifted) :: 53 of 98
Pseudo Genes (incomplete) :: 34 of 98
Pseudo Genes (internal stop) :: 18 of 98
Pseudo Genes (multiple problems) :: 7 of 98
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..8721
/organism="Acinetobacter baumannii BJAB0868"
/mol_type="genomic DNA"
/strain="BJAB0868"
/db_xref="taxon:1096997"
/plasmid="p1BJAB0868"
gene join(8680..8721,1..421)
/locus_tag="BJAB0868_RS18505"
/old_locus_tag="BJAB0868_p0001"
/pseudo
CDS join(8680..8721,1..421)
/locus_tag="BJAB0868_RS18505"
/old_locus_tag="BJAB0868_p0001"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_004781077.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="DIP1984 family protein"
gene complement(744..917)
/locus_tag="BJAB0868_RS19985"
CDS complement(744..917)
/locus_tag="BJAB0868_RS19985"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001282484.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001282484.1"
/translation="MSDNIIQLSKPCTLCENRQNVQLFAGLMLCGSCQENIRLTNPSM
FSANDEIEQKAQN"
gene complement(917..1288)
/locus_tag="BJAB0868_RS18510"
/old_locus_tag="BJAB0868_p0002"
CDS complement(917..1288)
/locus_tag="BJAB0868_RS18510"
/old_locus_tag="BJAB0868_p0002"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000504218.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000504218.1"
/translation="MGEKVKTYAVRLDPQVAEFYDQLANSEGIRTSKLFSKILTNDFQ
SIAVKQQADRIEDLVNRLEKRIDDFEEDNNFSEKYYEDFSGLYFMMLWLLMKNGASKD
EVRMIQAKGYSYADDNYKRVK"
gene 2487..3437
/gene="repM"
/locus_tag="BJAB0868_RS18520"
/old_locus_tag="BJAB0868_p0005"
CDS 2487..3437
/gene="repM"
/locus_tag="BJAB0868_RS18520"
/old_locus_tag="BJAB0868_p0005"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_004786597.1"
/GO_function="GO:0003887 - DNA-directed DNA polymerase
activity [Evidence IEA]"
/GO_process="GO:0006270 - DNA replication initiation
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="replication initiation protein RepM"
/protein_id="WP_001205343.1"
/translation="MRDLVVKDNALINASYNLDLVEQRLILLAIVEARESGKGINAND
PLEVHADSYINQFGVHRNTAYQALKDACKDLFARQFSYQEKKANGNIRNVMSRWVSQI
AYNDNEATVDLIFAPAVVPFITRLEEQFTKYELQQVSSLSSAYAIRLYELLIQWRSTG
KTPTIELQEFRKKLGVLDNEYLRMAHLKERVLELSIKQINEHTDITVKYEQHKRGRSI
SGFSFTFKQKKKDSPSIERDPNTLELFSKMTDAQRHMFANKLSELPEMGRYSQGTESY
QQFAVRIAEMLQDPAQFKELYPYLKKVGYMPSNKKDTVNG"
gene 3430..4005
/locus_tag="BJAB0868_RS18525"
/old_locus_tag="BJAB0868_p0006"
CDS 3430..4005
/locus_tag="BJAB0868_RS18525"
/old_locus_tag="BJAB0868_p0006"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_005102333.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid replication DNA-binding protein"
/protein_id="WP_001096616.1"
/translation="MAKLSLSEVSKKFHVDRSTIYRAVRNGRLSRSSDGQFDLAEVIR
CFGEPEQTSQKIESSKQEGDESTKKLIAHLENEVKKYQEREERLMQQIDRMQTLIELK
SVAPATAAPHQDATACDTKMPQHATTQQDTDNKKNNELNIAENVAVPQQETTAYHTQT
LQHATLQSVAVPQHKKRGLFGRVLNAVFDND"
gene complement(4357..4875)
/locus_tag="BJAB0868_RS18530"
/old_locus_tag="BJAB0868_p0007"
CDS complement(4357..4875)
/locus_tag="BJAB0868_RS18530"
/old_locus_tag="BJAB0868_p0007"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000447193.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="tetratricopeptide repeat protein"
/protein_id="WP_000447193.1"
/translation="METFAEPVFSNDLLAKAENGDTSAQLELAEIYLYGHGVDSDENQ
AEVWALKSAENGNVAAMFWLADGYVTYARLMEDDDKNDSLEHFQKAFKWFQKASENGH
SESMVELADLYTRADSGIEVNINKAFELREKAAKLGNKKAMRSLSVMYRDGIGIPKNT
DLAQSWWDKSEN"
gene 5248..5535
/locus_tag="BJAB0868_RS18535"
/old_locus_tag="BJAB0868_p0008"
CDS 5248..5535
/locus_tag="BJAB0868_RS18535"
/old_locus_tag="BJAB0868_p0008"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019383542.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="BrnT family toxin"
/protein_id="WP_000438826.1"
/translation="MEQYFEWDEAKNRKNQKKHDISFETASLVFEDPLRISIQDRHTN
GEERWQTIGRVKGVLMLLVAHTIFDEDDCEIIRIISARQVTKAERNKYEHG"
gene 5522..5836
/locus_tag="BJAB0868_RS18540"
/old_locus_tag="BJAB0868_p0009"
CDS 5522..5836
/locus_tag="BJAB0868_RS18540"
/old_locus_tag="BJAB0868_p0009"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_006582675.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="BrnA antitoxin family protein"
/protein_id="WP_001983304.1"
/translation="MSMVRYSHKELNEKFGEKQDAEIQRLLAKGTVPDDQLDLSDIPE
ITDWSNAVRQNQFYRPVKQQTSIRLDADVLAWFKAQGKGYQTRMNEILRDAMLKELKN
HQ"
gene 5964..8375
/gene="znuD2"
/locus_tag="BJAB0868_RS18545"
/old_locus_tag="BJAB0868_p0010"
CDS 5964..8375
/gene="znuD2"
/locus_tag="BJAB0868_RS18545"
/old_locus_tag="BJAB0868_p0010"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000932945.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="TonB-dependent receptor ZnuD2"
/protein_id="WP_000932953.1"
/translation="MLNKSKLFLALITLGASKILLAAEGPVTTLNTIVLTAQSDELGS
ELLGKSLNVSNQFIDTSKLKQRSTTLGDALGTELGIHSNQYGGGASTPIIRGQEGKRI
KVLQNNADVLDMSNMSPDHAVTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIDYKI
PTQMPQDGLEGNTTLRFNTGSNEKLTTAGVTVGLSPHVALRAEGLYRNAGNYKTPHYQ
SSSYNSLEDLENQNSIYKNLKYLPESWAESRVGTLGLSWIDDNTYLGVSYTHRHDEYG
LPAHSHLYEGCGASAIGIDSRISGLKNYLLYYPQLMDEQDINYINPRPDCHQHNHIHE
TNFSHNAPYIDLNTRRYDVRGEFTQPFTGIDKIRTSLSYIDYFHNELEGDKITNFFKN
TGKVGRIELSHQPLGELTGILGLQYLEQDNSALSPVHSQEGHTTYLDNQQLLNRNVTK
NFSVFGLEKYNWNDFTFELGARIEKQKVSMDYDIEKIKDSMKPWPNKYNSPYVEKNNK
IRAQNLKSILEAVQPNKETAFSYAGTVHWRFAPNYILSLTGTHQERLPNAQEMYTHGM
HLATNSFEIGNRFLRKEKSNNLEISLAYKDDLLDYQISTYYYDFDNYIYLQTLNEVLG
TTKVRDQHTLRINHYSQSAANFYGLEGNIGYQFNSVYHGSLFGDYVKGRLTNLPDAVI
AYDIWNREPTLAPQKDRYTPRLPPARLGTRLKADFDESLKGEIEYYRVFKQDNISKFE
QVTSGYNMLNMTLAYKNKLSHTEYDLFFKANNLLDQKVYAHETFLPYIPQIGRNFSLG
LNLNF"
CONTIG join(CP003850.1:1..8721)
//
