LOCUS       NC_023311                983 bp ss-DNA     circular VRL 13-AUG-2018
DEFINITION  Pea yellow stunt virus segment DNA-U4, complete sequence.
ACCESSION   NC_023311
VERSION     NC_023311.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq.
SOURCE      Pea yellow stunt virus (PYSV-[AT;15])
  ORGANISM  Pea yellow stunt virus
            Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota;
            Arfiviricetes; Mulpavirales; Nanoviridae; Nanovirus.
REFERENCE   1  (bases 1 to 983)
  AUTHORS   Grigoras,I., Ginzo,A.I., Martin,D.P., Varsani,A., Romero,J.,
            Mammadov,A.Ch., Huseynova,I.M., Aliyev,J.A., Kheyr-Pour,A.,
            Huss,H., Ziebell,H., Timchenko,T., Vetten,H.J. and Gronenborn,B.
  TITLE     Genome diversity and evidence of recombination and reassortment in
            nanoviruses from Europe
  JOURNAL   J. Gen. Virol. 95 (PT 5), 1178-1191 (2014)
   PUBMED   24515973
REFERENCE   2  (bases 1 to 983)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JAN-2014) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 983)
  AUTHORS   Grigoras,I., Gronenborn,B. and Vetten,H.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2013) Institut des Sciences du Vegetal, Centre
            National de la Recherche Scientifique, Gif sur Yvette 91198, France
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to KC979061.
            GenBank Accession Numbers KC979054-KC979062 represent sequences
            from the 9 segments of Pea yellow stunt virus.
            
            ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..983
                     /organism="Pea yellow stunt virus"
                     /mol_type="genomic DNA"
                     /isolate="Glinzendorf-Marchfeld_15"
                     /isolation_source="plant tissue"
                     /host="Pisum sativum"
                     /db_xref="taxon:1436892"
                     /segment="DNA U4"
                     /country="Austria"
                     /collection_date="14-Jun-2010"
                     /collected_by="H.J. Vetten"
                     /acronym="PYSV-[AT;15]"
     stem_loop       join(966..983,1..11)
                     /note="part of replication origin"
     misc_feature    join(977..983,1..2)
                     /note="conserved nonanucleotide at replication origin"
     gene            1..983
                     /gene="U4"
                     /locus_tag="AA79_sU4gp1"
                     /db_xref="GeneID:18158324"
     regulatory      284..290
                     /regulatory_class="TATA_box"
                     /gene="U4"
                     /locus_tag="AA79_sU4gp1"
     CDS             366..677
                     /gene="U4"
                     /locus_tag="AA79_sU4gp1"
                     /codon_start=1
                     /product="U4 protein"
                     /protein_id="YP_008997809.1"
                     /db_xref="GeneID:18158324"
                     /translation="MEHRFLVFFLLGLAALNSSFVLNLILGYVLGILLRKNMSKLRSL
                     LSGEDEVEVLPEDVVSVEGVAEDVRDHLKTLGLDVKVEGEDLEYLQSIWRELRKRAVN
                     L"
     regulatory      744..750
                     /regulatory_class="polyA_signal_sequence"
                     /gene="U4"
                     /locus_tag="AA79_sU4gp1"
ORIGIN      
        1 acccccctcc cgggatcaga gcgcctactg agaatgaatc tcagccattc attgtggagg
       61 ccacgtggac gatcaggatc tgtgattcga gaagcgaatc tgacggaaga tcgtccacta
      121 cgcgtgaaag ttatacttgc ttctgattgg ccgaaattgc ggctgtcccc accatgcttt
      181 ccacttgctt tccagctatg ccagctaata tatgtgaatt aatttaatat aaattaaatt
      241 aataaatagt ggcgttgtgg gtacgctacc tcccacagct gtctataaaa gcctaaattg
      301 ctccgatgct tcattgctaa gaaatagttt ctctctctac atttttagag agagagagtc
      361 tcgttatgga acaccggttc cttgtgttct tccttctggg tctcgctgcg ttaaattcat
      421 cgttcgtatt gaatttaatt ctgggttatg ttttaggtat tttattacgg aagaacatgt
      481 caaagttgcg atccttgctc tcaggtgaag atgaagttga agtcctgcct gaagacgtcg
      541 tttccgtaga aggtgttgct gaagatgttc gagatcatct aaagacactg ggtctcgacg
      601 tgaaggttga aggtgaagat ttagagtatt tacagtctat atggagagag ttaagaaaac
      661 gtgcggttaa tttgtaaata tgcacatgta ccgttaggta agtcatattg tacgtgttac
      721 tgaaagtgta atcgcttctg aagaataaaa taatattatt ttatgttatt gggctttatc
      781 tctattgggc ttgtgtcgcc cagttcatta cacgcattta attaacagtc atatataaat
      841 acaatattgc tattatattc ctatctccgc gaagcggtat gattaattaa tttagtttaa
      901 ttaataataa gcatttttta ttatgtatcg ggatcaaatg cactatttga tcccatgatg
      961 acgtagggag ggggcttagt att
//