LOCUS NP_001049785 162 aa linear PLN 08-JUN-2010
DEFINITION Os03g0288500, partial [Oryza sativa Japonica Group].
ACCESSION NP_001049785
VERSION NP_001049785.1 GI:115452369
DBSOURCE REFSEQ: accession NM_001056320.1
KEYWORDS .
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
REFERENCE 1
AUTHORS Tanaka,T., Antonio,B.A., Kikuchi,S., Matsumoto,T., Nagamura,Y.,
Numa,H., Sakai,H., Wu,J., Itoh,T., Sasaki,T., Aono,R., Fujii,Y.,
Habara,T., Harada,E., Kanno,M., Kawahara,Y., Kawashima,H.,
Kubooka,H., Matsuya,A., Nakaoka,H., Saichi,N., Sanbonmatsu,R.,
Sato,Y., Shinso,Y., Suzuki,M., Takeda,J., Tanino,M., Todokoro,F.,
Yamaguchi,K., Yamamoto,N., Yamasaki,C., Imanishi,T., Okido,T.,
Tada,M., Ikeo,K., Tateno,Y., Gojobori,T., Lin,Y.C., Wei,F.J.,
Hsing,Y.I., Zhao,Q., Han,B., Kramer,M.R., McCombie,R.W.,
Lonsdale,D., O'Donovan,C.C., Whitfield,E.J., Apweiler,R.,
Koyanagi,K.O., Khurana,J.P., Raghuvanshi,S., Singh,N.K.,
Tyagi,A.K., Haberer,G., Fujisawa,M., Hosokawa,S., Ito,Y., Ikawa,H.,
Shibata,M., Yamamoto,M., Bruskiewich,R.M., Hoen,D.R., Bureau,T.E.,
Namiki,N., Ohyanagi,H., Sakai,Y., Nobushima,S., Sakata,K.,
Barrero,R.A., Sato,Y., Souvorov,A., Smith-White,B., Tatusova,T.,
An,S., An,G., OOta,S., Fuks,G., Fuks,G., Messing,J., Christie,K.R.,
Lieberherr,D., Kim,H., Zuccolo,A., Wing,R.A., Nobuta,K.,
Green,P.J., Lu,C., Meyers,B.C., Chaparro,C., Piegu,B., Panaud,O.
and Echeverria,M.
CONSRTM Rice Annotation Project
TITLE The Rice Annotation Project Database (RAP-DB): 2008 update
JOURNAL Nucleic Acids Res. 36 (DATABASE ISSUE), D1028-D1033 (2008)
PUBMED 18089549
REFERENCE 2
AUTHORS Itoh,T., Tanaka,T., Barrero,R.A., Yamasaki,C., Fujii,Y.,
Hilton,P.B., Antonio,B.A., Aono,H., Apweiler,R., Bruskiewich,R.,
Bureau,T., Burr,F., Costa de Oliveira,A., Fuks,G., Habara,T.,
Haberer,G., Han,B., Harada,E., Hiraki,A.T., Hirochika,H., Hoen,D.,
Hokari,H., Hosokawa,S., Hsing,Y.I., Ikawa,H., Ikeo,K., Imanishi,T.,
Ito,Y., Jaiswal,P., Kanno,M., Kawahara,Y., Kawamura,T.,
Kawashima,H., Khurana,J.P., Kikuchi,S., Komatsu,S., Koyanagi,K.O.,
Kubooka,H., Lieberherr,D., Lin,Y.C., Lonsdale,D., Matsumoto,T.,
Matsuya,A., McCombie,W.R., Messing,J., Miyao,A., Mulder,N.,
Nagamura,Y., Nam,J., Namiki,N., Numa,H., Nurimoto,S., O'Donovan,C.,
Ohyanagi,H., Okido,T., Oota,S., Osato,N., Palmer,L.E., Quetier,F.,
Raghuvanshi,S., Saichi,N., Sakai,H., Sakai,Y., Sakata,K.,
Sakurai,T., Sato,F., Sato,Y., Schoof,H., Seki,M., Shibata,M.,
Shimizu,Y., Shinozaki,K., Shinso,Y., Singh,N.K., Smith-White,B.,
Takeda,J., Tanino,M., Tatusova,T., Thongjuea,S., Todokoro,F.,
Tsugane,M., Tyagi,A.K., Vanavichit,A., Wang,A., Wing,R.A.,
Yamaguchi,K., Yamamoto,M., Yamamoto,N., Yu,Y., Zhang,H., Zhao,Q.,
Higo,K., Burr,B., Gojobori,T. and Sasaki,T.
CONSRTM Rice Annotation Project
TITLE Curated genome annotation of Oryza sativa ssp. japonica and
comparative genome analysis with Arabidopsis thaliana
JOURNAL Genome Res. 17 (2), 175-183 (2007)
PUBMED 17210932
REFERENCE 3
AUTHORS Ohyanagi,H., Tanaka,T., Sakai,H., Shigemoto,Y., Yamaguchi,K.,
Habara,T., Fujii,Y., Antonio,B.A., Nagamura,Y., Imanishi,T.,
Ikeo,K., Itoh,T., Gojobori,T. and Sasaki,T.
TITLE The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa
ssp. japonica genome information
JOURNAL Nucleic Acids Res. 34 (DATABASE ISSUE), D741-D744 (2006)
PUBMED 16381971
REFERENCE 4
AUTHORS Matsumoto,T., Wu,J., Kanamori,H., Katayose,Y., Fujisawa,M.,
Namiki,N., Mizuno,H., Yamamoto,K., Antonio,B.A., Baba,T.,
Sakata,K., Nagamura,Y., Aoki,H., Arikawa,K., Arita,K., Bito,T.,
Chiden,Y., Fujitsuka,N., Fukunaka,R., Hamada,M., Harada,C.,
Hayashi,A., Hijishita,S., Honda,M., Hosokawa,S., Ichikawa,Y.,
Idonuma,A., Iijima,M., Ikeda,M., Ikeno,M., Ito,K., Ito,S., Ito,T.,
Ito,Y., Ito,Y., Iwabuchi,A., Kamiya,K., Karasawa,W., Kurita,K.,
Katagiri,S., Kikuta,A., Kobayashi,H., Kobayashi,N., Machita,K.,
Maehara,T., Masukawa,M., Mizubayashi,T., Mukai,Y., Nagasaki,H.,
Nagata,Y., Naito,S., Nakashima,M., Nakama,Y., Nakamichi,Y.,
Nakamura,M., Meguro,A., Negishi,M., Ohta,I., Ohta,T., Okamoto,M.,
Ono,N., Saji,S., Sakaguchi,M., Sakai,K., Shibata,M., Shimokawa,T.,
Song,J., Takazaki,Y., Terasawa,K., Tsugane,M., Tsuji,K., Ueda,S.,
Waki,K., Yamagata,H., Yamamoto,M., Yamamoto,S., Yamane,H.,
Yoshiki,S., Yoshihara,R., Yukawa,K., Zhong,H., Yano,M., Yuan,Q.,
Ouyang,S., Liu,J., Jones,K.M., Gansberger,K., Moffat,K., Hill,J.,
Bera,J., Fadrosh,D., Jin,S., Johri,S., Kim,M., Overton,L.,
Reardon,M., Tsitrin,T., Vuong,H., Weaver,B., Ciecko,A., Tallon,L.,
Jackson,J., Pai,G., Aken,S.V., Utterback,T., Reidmuller,S.,
Feldblyum,T., Hsiao,J., Zismann,V., Iobst,S., de Vazeille,A.R.,
Buell,C.R., Ying,K., Li,Y., Lu,T., Huang,Y., Zhao,Q., Feng,Q.,
Zhang,L., Zhu,J., Weng,Q., Mu,J., Lu,Y., Fan,D., Liu,Y., Guan,J.,
Zhang,Y., Yu,S., Liu,X., Zhang,Y., Hong,G., Han,B., Choisne,N.,
Demange,N., Orjeda,G., Samain,S., Cattolico,L., Pelletier,E.,
Couloux,A., Segurens,B., Wincker,P., D'Hont,A., Scarpelli,C.,
Weissenbach,J., Salanoubat,M., Quetier,F., Yu,Y., Kim,H.R.,
Rambo,T., Currie,J., Collura,K., Luo,M., Yang,T., Ammiraju,J.S.S.,
Engler,F., Soderlund,C., Wing,R.A., Palmer,L.E., de la Bastide,M.,
Spiegel,L., Nascimento,L., Zutavern,T., O'Shaughnessy,A., Dike,S.,
Dedhia,N., Preston,R., Balija,V., McCombie,W.R., Chow,T., Chen,H.,
Chung,M., Chen,C., Shaw,J., Wu,H., Hsiao,K., Chao,Y., Chu,M.,
Cheng,C., Hour,A., Lee,P., Lin,S., Lin,Y., Liou,J., Liu,S.,
Hsing,Y., Raghuvanshi,S., Mohanty,A., Bharti,A.K., Gaur,A.,
Gupta,V., Kumar,D., Ravi,V., Vij,S., Kapur,A., Khurana,P.,
Khurana,P., Khurana,J.P., Tyagi,A.K., Gaikwad,K., Singh,A.,
Dalal,V., Srivastava,S., Dixit,A., Pal,A.K., Ghazi,I.A., Yadav,M.,
Pandit,A., Bhargava,A., Sureshbabu,K., Batra,K., Sharma,T.R.,
Mohapatra,T., Singh,N.K., Messing,J., Nelson,A.B., Fuks,G.,
Kavchok,S., Keizer,G., Linton,E., Llaca,V., Song,R., Tanyolac,B.,
Young,S., Ho-Il,K., Hahn,J.H., Sangsakoo,G., Vanavichit,A., de
Mattos,Luiz.A.T., Zimmer,P.D., Malone,G., Dellagostin,O., de
Oliveira,A.C., Bevan,M., Bancroft,I., Minx,P., Cordum,H.,
Wilson,R., Cheng,Z., Jin,W., Jiang,J., Leong,S.A., Iwama,H.,
Gojobori,T., Itoh,T., Niimura,Y., Fujii,Y., Habara,T., Sakai,H.,
Sato,Y., Wilson,G., Kumar,K., McCouch,S., Juretic,N., Hoen,D.,
Wright,S., Bruskiewich,R., Bureau,T., Miyao,A., Hirochika,H.,
Nishikawa,T., Kadowaki,K., Sugiura,M., Burr,B. and Sasaki,T.
CONSRTM International Rice Genome Sequencing Project
TITLE The map-based sequence of the rice genome
JOURNAL Nature 436 (7052), 793-800 (2005)
PUBMED 16100779
REFERENCE 5
CONSRTM IRGSP(International Rice Genome Sequencing Project)
TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 3
JOURNAL Unpublished
REFERENCE 6
CONSRTM The Rice Annotation Project (RAP)
TITLE The Second Rice Annotation Project Meeting (RAP2)
JOURNAL Unpublished
REFERENCE 7 (residues 1 to 162)
AUTHORS Sasaki,T.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2004) Contact:Takuji Sasaki National Institute of
Agrobiological Sciences, Rice Genome Research Program; Kannondai
2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL
:http://rgp.dna.affrc.go.jp/
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to BAF11699.
The IRGSP pseudomolecules (Build 4.0).
The orientation of the sequence is the short arm to the long arm of
the chromosome.
The Institute for Genomic Research Rockville, MD 20850, USA,
URL:http://www.tigr.org/, Tel:(301)838-3558 Fax:(301)838-0208 and
Arizona Genomics Institute, University of Arizona, Tucson, AZ
85721-0036, USA, URL:http://www.genome.arizona.edu/,
Tel:(520)-626-9601 Fax:(520)-621-1259
and
Cold Spring Harbor Laboratory Cold Spring Harbor, NY 11724, USA,
URL:http://www.cshl.org/, Tel:(516)367-8884 Fax:(516)367-8874 and
Genome Sequencing Center, Washington University School of Medicine,
St. Louis, MO 63108 USA, URL:http://genome.wustl.edu/,
Tel:(314)286-1838 Fax:(314)286-1810
and
The University of Wisconsin-Madison, Madison, WI 53706 USA,
URL:http://www.gcow.wisc.edu/Rice/index.htm, Tel:608-262-5309
Fax:608-262-1541
The position of gaps in this pseudomolecule with unknown size is
assigned 100 Ns based on the guideline set by DDBJ/EMBL/GenBank.
This sequence entry was annotated by the Rice Annotation Project.
http://rapdb.lab.nig.ac.jp/
COMPLETENESS: incomplete on the amino end.
FEATURES Location/Qualifiers
source 1..162
/organism="Oryza sativa Japonica Group"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/chromosome="3"
Protein <1..162
/product="hypothetical protein"
/name="Os03g0288500"
Region 21..>126
/region_name="PseudoU_synth"
/note="Pseudouridine synthases catalyze the isomerization
of specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi); cl00130"
/db_xref="CDD:211430"
Site 115..118
/site_type="active"
/db_xref="CDD:211324"
CDS 1..162
/gene="Os03g0288500"
/coded_by="NM_001056320.1:<1..489"
/note="Pseudouridine synthase domain containing protein;
The start codon is not identified.;
contains InterPro domain(s): IPR006145;
has GO asignment(s): GO:0003723, GO:0006396, GO:0009982;
supported by AK065443"
/db_xref="GeneID:4332490"
ORIGIN
1 ccivalcrwi krirdgqitv dgevatdpdm ilregsklvy hrlpwqepfa phlldvlyed
61 ddmialnkps glqvlpkglf qqrtvlaqlq lkdwkmpssf cskrkdaqsh pvpvhrlgrg
121 tsglflcfcs vhaqkpwsid tqlsssgckf lftdhqsvkl vv
//
