LOCUS NP_390219 439 aa linear CON 10-JUN-2013
DEFINITION diaminopimelate decarboxylase [Bacillus subtilis subsp. subtilis
str. 168].
ACCESSION NP_390219
VERSION NP_390219.1 GI:16079395
DBLINK Project: 57675
BioProject: PRJNA57675
DBSOURCE REFSEQ: accession NC_000964.3
KEYWORDS .
SOURCE Bacillus subtilis subsp. subtilis str. 168
ORGANISM Bacillus subtilis subsp. subtilis str. 168
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
REFERENCE 1 (residues 1 to 439)
AUTHORS Barbe,V., Cruveiller,S., Kunst,F., Lenoble,P., Meurice,G.,
Sekowska,A., Vallenet,D., Wang,T., Moszer,I., Medigue,C. and
Danchin,A.
TITLE From a consortium sequence to a unified sequence: the Bacillus
subtilis 168 reference genome a decade later
JOURNAL Microbiology (Reading, Engl.) 155 (PT 6), 1758-1775 (2009)
PUBMED 19383706
REFERENCE 2 (residues 1 to 439)
AUTHORS Eichenberger,P., Fujita,M., Jensen,S.T., Conlon,E.M., Rudner,D.Z.,
Wang,S.T., Ferguson,C., Haga,K., Sato,T., Liu,J.S. and Losick,R.
TITLE The program of gene transcription for a single differentiating cell
type during sporulation in Bacillus subtilis
JOURNAL PLoS Biol. 2 (10), E328 (2004)
PUBMED 15383836
REFERENCE 3 (residues 1 to 439)
AUTHORS Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G.,
Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S.,
Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S.C.,
Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V.,
Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I.F., Cummings,N.J.,
Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D.,
Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E.,
Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A.,
Galleron,N., Ghim,S.Y., Glaser,P., Goffeau,A., Golightly,E.J.,
Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R.,
Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F.,
Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y.,
Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P.,
Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A.,
Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H.,
Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado,R.P.,
Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M.,
Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M.,
Portetelle,D., Porwollik,S., Prescott,A.M., Presecan,E., Pujic,P.,
Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M.,
Rivolta,C., Rocha,E., Roche,B., Rose,M., Sadaie,Y., Sato,T.,
Scanlan,E., Schleich,S., Schroeter,R., Scoffone,F., Sekiguchi,J.,
Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B.,
Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K.,
Takeuchi,M., Tamakoshi,A., Tanaka,T., Terpstra,P., Tognoni,A.,
Tosato,V., Uchiyama,S., Vandenbol,M., Vannier,F., Vassarotti,A.,
Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T.,
Winters,P., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K.,
Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and
Danchin,A.
TITLE The complete genome sequence of the gram-positive bacterium
Bacillus subtilis
JOURNAL Nature 390 (6657), 249-256 (1997)
PUBMED 9384377
REFERENCE 4 (residues 1 to 439)
AUTHORS Mizuno,M., Masuda,S., Takemaru,K., Hosono,S., Sato,T., Takeuchi,M.
and Kobayashi,Y.
TITLE Systematic sequencing of the 283 kb 210 degrees-232 degrees region
of the Bacillus subtilis genome containing the skin element and
many sporulation genes
JOURNAL Microbiology (Reading, Engl.) 142 (PT 11), 3103-3111 (1996)
PUBMED 8969508
REFERENCE 5 (residues 1 to 439)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (12-AUG-2009) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 6 (residues 1 to 439)
AUTHORS Genoscope -,C.E.A.
CONSRTM Institut Pasteur and Genoscope
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2009) Genoscope - Centre National de Sequencage :
BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
- Web : www.genoscope.cns.fr)
REFERENCE 7 (residues 1 to 439)
AUTHORS Kunst,F., Ogasawara,N., Yoshikawa,H. and Danchin,A.
TITLE Direct Submission
JOURNAL Submitted (18-NOV-1997) I. Moszer, A. Danchin, Institut Pasteur,
Regulation de l'Expression Genetique, 28 rue du Docteur Roux, 75724
Paris Cedex 15, FRANCE. E-mail: moszer@pasteur.fr,
adanchin@pasteur.fr Phone: +33 (0)1 45 68 84 41, Fax: +33 (0)1 45
68 89 48
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CAB14270.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..439
/organism="Bacillus subtilis subsp. subtilis str. 168"
/strain="168"
/sub_species="subtilis"
/db_xref="taxon:224308"
Protein 1..439
/product="diaminopimelate decarboxylase"
/EC_number="4.1.1.20"
/calculated_mol_wt=48443
Region 7..431
/region_name="lysA"
/note="diaminopimelate decarboxylase; TIGR01048"
/db_xref="CDD:233248"
Region 29..409
/region_name="PLPDE_III_DapDC"
/note="Type III Pyridoxal 5-phosphate (PLP)-Dependent
Enzyme Diaminopimelate Decarboxylase; cd06828"
/db_xref="CDD:143501"
Site order(64,66,85,108,155,205,207,210,247..248,290..293,330,
334,361,390,394,398)
/site_type="active"
/db_xref="CDD:143501"
Site order(64,66,85,108,155,205,207,210,247..248,290..293,361,
390)
/site_type="other"
/note="pyridoxal 5'-phosphate (PLP) binding site [chemical
binding]"
/db_xref="CDD:143501"
Site order(66,207,210,293,330,334,361..362,390,394,398)
/site_type="other"
/note="substrate binding site [chemical binding]"
/db_xref="CDD:143501"
Site order(66,361)
/site_type="active"
/note="catalytic residues [active]"
/db_xref="CDD:143501"
Site order(71..72,87..88,90..91,110..112,116,131,134,175..178,
308,310,318,320,358..363,365,393..395,397..400,403)
/site_type="other"
/note="dimer interface [polypeptide binding]"
/db_xref="CDD:143501"
CDS 1..439
/gene="lysA"
/locus_tag="BSU23380"
/coded_by="complement(NC_000964.3:2436947..2438266)"
/inference="ab initio prediction:AMIGene:2.0"
/note="Evidence 1a: Function experimentally demonstrated
in the studied strain; PubMedId: 14627808, 9044297;
Product type e: enzyme"
/transl_table=11
/db_xref="GeneID:938931"
CONTIG join(WP_004398851.1:1..439)
ORIGIN
1 mflhgtsrqn qhghleiggv dalylaekyg tplyvydval ireraksfkq afisaglkaq
61 vayaskafss vamiqlaeee glsldvvsgg elytavaagf paerihfhgn nksreelrma
121 lehrigcivv dnfyeialle dlcketghsi dvllritpgv eahthdyitt gqedskfgfd
181 lhngqterai eqvlqsehiq llgvhchigs qifdtagfvl aaekifkkld ewrdsysfvs
241 kvlnlgggfg iryteddepl hateyvekii eavkenasry gfdipeiwie pgrslvgdag
301 ttlytvgsqk evpgvrqyva vdggmndnir palyqakyea aaanrigeah dktvsiagkc
361 cesgdmliwd idlpevkegd llavfctgay gysmannynr iprpavvfve ngeahlvvkr
421 etyedivkld lpfktgvkq
//
