LOCUS NP_391297 330 aa linear CON 12-FEB-2021
DEFINITION transcriptional regulator of the galactan degradation operon (GanR
/ beta-1,4-galactobiose) [Bacillus subtilis subsp. subtilis str.
168].
ACCESSION NP_391297
VERSION NP_391297.1
DBLINK BioProject: PRJNA76
BioSample: SAMEA3138188
DBSOURCE REFSEQ: accession NC_000964.3
KEYWORDS RefSeq.
SOURCE Bacillus subtilis subsp. subtilis str. 168
ORGANISM Bacillus subtilis subsp. subtilis str. 168
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
REFERENCE 1
AUTHORS Borriss,R., Danchin,A., Harwood,C.R., Medigue,C., Rocha,E.P.C.,
Sekowska,A. and Vallenet,D.
TITLE Bacillus subtilis, the model Gram-positive bacterium: 20 years of
annotation refinement
JOURNAL Microb Biotechnol 11 (1), 3-17 (2018)
PUBMED 29280348
REFERENCE 2 (residues 1 to 330)
AUTHORS Belda,E., Sekowska,A., Le Fevre,F., Morgat,A., Mornico,D.,
Ouzounis,C., Vallenet,D., Medigue,C. and Danchin,A.
TITLE An updated metabolic view of the Bacillus subtilis 168 genome
JOURNAL Microbiology (Reading, Engl.) 159 (Pt 4), 757-770 (2013)
PUBMED 23429746
REFERENCE 3 (residues 1 to 330)
AUTHORS Barbe,V., Cruveiller,S., Kunst,F., Lenoble,P., Meurice,G.,
Sekowska,A., Vallenet,D., Wang,T., Moszer,I., Medigue,C. and
Danchin,A.
TITLE From a consortium sequence to a unified sequence: the Bacillus
subtilis 168 reference genome a decade later
JOURNAL Microbiology (Reading, Engl.) 155 (Pt 6), 1758-1775 (2009)
PUBMED 19383706
REFERENCE 4 (residues 1 to 330)
AUTHORS Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G.,
Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S.,
Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S.C.,
Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V.,
Carter,N.M., Choi,S.K., Cordani,J.J., Connerton,I.F.,
Cummings,N.J., Daniel,R.A., Denziot,F., Devine,K.M., Dusterhoft,A.,
Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C.,
Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S.,
Galizzi,A., Galleron,N., Ghim,S.Y., Glaser,P., Goffeau,A.,
Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K.,
Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S.,
Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D.,
Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y.,
Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K.,
Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M.,
Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N.,
Mellado,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D.,
O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V.,
Pohl,T.M., Portelle,D., Porwollik,S., Prescott,A.M., Presecan,E.,
Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M.,
Rivolta,C., Rocha,E., Roche,B., Rose,M., Sadaie,Y., Sato,T.,
Scanlan,E., Schleich,S., Schroeter,R., Scoffone,F., Sekiguchi,J.,
Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B.,
Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K.,
Takeuchi,M., Tamakoshi,A., Tanaka,T., Terpstra,P., Togoni,A.,
Tosato,V., Uchiyama,S., Vandebol,M., Vannier,F., Vassarotti,A.,
Viari,A., Wambutt,R., Wedler,H., Weitzenegger,T., Winters,P.,
Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K.,
Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A.
TITLE The complete genome sequence of the gram-positive bacterium
Bacillus subtilis
JOURNAL Nature 390 (6657), 249-256 (1997)
PUBMED 9384377
REFERENCE 5 (residues 1 to 330)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2018) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 6 (residues 1 to 330)
AUTHORS Genoscope -,C.E.A.
CONSRTM AMAbiotics and Genoscope
TITLE Direct Submission
JOURNAL Submitted (24-JAN-2013) A. Danchin, AMAbiotics, Bldg G1, 2, rue
Gaston Cremieux, 91000 EVRY antoine.danchin@normalesup.org Bldg G1
Genoscope / CEA (Commissariat a l'energie atomique et aux energies
alternatives): BP 191 91006 EVRY cedex - FRANCE (E-mail:
seqref@genoscope.cns.fr - Web: www.genoscope.cns.fr)
REFERENCE 7 (residues 1 to 330)
AUTHORS Genoscope -,C.E.A.
CONSRTM Institut Pasteur and Genoscope
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2009) Genoscope - Centre National de Sequencage :
BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
- Web : www.genoscope.cns.fr)
REFERENCE 8 (residues 1 to 330)
AUTHORS Kunst,F., Ogasawara,N., Yoshikawa,H. and Danchin,A.
TITLE Direct Submission
JOURNAL Submitted (18-NOV-1997) I. Moszer, A. Danchin, Genetique des
Genomes Bacteriens, Institut Pasteur, 28 rue du Docteur Roux, 75724
Paris Cedex 15, FRANCE. E-mail: moszer@pasteur.fr,
antoine.danchin@normalesup.org Phone: +33 (0)1 45 68 84 41, Fax:
+33 (0)1 45 68 89 48
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to CAB15422.
On or before Mar 17, 2009 this sequence version replaced
gi:32468687, gi:32468690, gi:32468695, gi:32468704, gi:32468715,
gi:32468723, gi:32468738, gi:32468743, gi:32468745, gi:32468758,
gi:32468767, gi:32468778, gi:32468787, gi:32468796, gi:32468802,
gi:32468809, gi:32468813, gi:32468825, gi:32468830, gi:32468833,
gi:32468840, gi:38680335.
Annotation results relative to BLAST similarities, COG
assignations, enzymatic function prediction (PRIAM software), TMHMM
and SignalP predictions, and synteny conservation (Syntonizer
software) are available in the MicroScope annotation platform
http://www.genoscope.cns.fr/agc/microscope.
The large cluster comprising the i, h and g rDNA regions could not
be properly resolved, we therefore incorporated the original
sequence of rRNAihg in the final assembly.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..330
/organism="Bacillus subtilis subsp. subtilis str. 168"
/strain="168"
/sub_species="subtilis"
/type_material="type strain of Bacillus subtilis"
/db_xref="taxon:224308"
Protein 1..330
/product="transcriptional regulator of the galactan
degradation operon (GanR / beta-1,4-galactobiose)"
/function="16.3: Control"
/calculated_mol_wt=37331
Region 5..>48
/region_name="HTH_LacI"
/note="Helix-turn-helix (HTH) DNA binding domain of the
LacI family of transcriptional regulators; cd01392"
/db_xref="CDD:143331"
Region 58..328
/region_name="PBP1_GalR"
/note="ligand-binding domain of DNA transcription
repressor GalR which is one of two regulatory proteins
involved in galactose transport and metabolism; cd01544"
/db_xref="CDD:380486"
Site order(58,76..78,81..82,84..85,90..94,96,100,103,106..107,
109,220,250,254,257..258)
/site_type="other"
/note="putative dimer interface [polypeptide binding]"
/db_xref="CDD:380486"
Site order(75..76,79,116,138,151,192,217,273,290)
/site_type="other"
/note="putative ligand binding site [chemical binding]"
/db_xref="CDD:380486"
CDS 1..330
/gene="ganR"
/locus_tag="BSU_34170"
/old_locus_tag="BSU34170"
/coded_by="complement(NC_000964.3:3508659..3509651)"
/experiment="publication(s) with functional evidences,
PMID:2104611, 9287030, 10486575, 17056685, 27501980,
28617843"
/note="Evidence 1a: Function from experimental evidences
in the studied strain; PubMedId: 2104611, 9287030,
10486575, 17056685, 27501980, 28617843; Product type r :
regulator"
/transl_table=11
/db_xref="EnsemblGenomes-Gn:BSU34170"
/db_xref="EnsemblGenomes-Tr:CAB15422"
/db_xref="GOA:O07008"
/db_xref="InterPro:IPR000843"
/db_xref="InterPro:IPR010982"
/db_xref="InterPro:IPR028082"
/db_xref="SubtiList:BG12435"
/db_xref="UniProtKB/Swiss-Prot:O07008"
/db_xref="GeneID:936331"
CONTIG join(WP_003244199.1:1..330)
ORIGIN
1 matikdiaqe agfsistvsr vlnndeslsv pdetrekiye aaeklnyrkk tvrplvkhia
61 flywltdkee ledvyfktmr leveklakaf nvdmttykia dgiesipeht egfiavgtfs
121 deelaflrnl tengvfidst pdpdhfdsvr pdlaqmtrkt vniltekghk sigfiggtyk
181 npntnqdemd ireqtfrsym rekamldery ifchrgfsve ngyrlmsaai dtlgdqlpta
241 fmiaadpiav gclqalnekg iaipnrvsiv sinnisfaky vspplttfhi dihelcknav
301 qllleqvqdk rrtvktlyvg aelivrksmn
//
