GenomeNet

Database: RefSeq
Entry: XP_002054937
LinkDB: XP_002054937
Original site: XP_002054937 
LOCUS       XP_002054937            2095 aa            linear   INV 21-DEC-2015
DEFINITION  LOW QUALITY PROTEIN: uncharacterized protein Dvir_GJ19065
            [Drosophila virilis].
ACCESSION   XP_002054937
VERSION     XP_002054937.2
DBLINK      BioProject: PRJNA29995
            BioSample: SAMN02953641
DBSOURCE    REFSEQ: accession XM_002054901.2
KEYWORDS    RefSeq.
SOURCE      Drosophila virilis
  ORGANISM  Drosophila virilis
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Holometabola; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
REFERENCE   1  (residues 1 to 2095)
  AUTHORS   Zimin,A.V., Smith,D.R., Sutton,G. and Yorke,J.A.
  TITLE     Assembly reconciliation
  JOURNAL   Bioinformatics 24 (1), 42-45 (2008)
   PUBMED   18057021
REFERENCE   2  (residues 1 to 2095)
  AUTHORS   Clark,A.G., Eisen,M.B., Smith,D.R., Bergman,C.M., Oliver,B.,
            Markow,T.A., Kaufman,T.C., Kellis,M., Gelbart,W., Iyer,V.N.,
            Pollard,D.A., Sackton,T.B., Larracuente,A.M., Singh,N.D.,
            Abad,J.P., Abt,D.N., Adryan,B., Aguade,M., Akashi,H.,
            Anderson,W.W., Aquadro,C.F., Ardell,D.H., Arguello,R.,
            Artieri,C.G., Barbash,D.A., Barker,D., Barsanti,P., Batterham,P.,
            Batzoglou,S., Begun,D., Bhutkar,A., Blanco,E., Bosak,S.A.,
            Bradley,R.K., Brand,A.D., Brent,M.R., Brooks,A.N., Brown,R.H.,
            Butlin,R.K., Caggese,C., Calvi,B.R., Bernardo de Carvalho,A.,
            Caspi,A., Castrezana,S., Celniker,S.E., Chang,J.L., Chapple,C.,
            Chatterji,S., Chinwalla,A., Civetta,A., Clifton,S.W., Comeron,J.M.,
            Costello,J.C., Coyne,J.A., Daub,J., David,R.G., Delcher,A.L.,
            Delehaunty,K., Do,C.B., Ebling,H., Edwards,K., Eickbush,T.,
            Evans,J.D., Filipski,A., Findeiss,S., Freyhult,E., Fulton,L.,
            Fulton,R., Garcia,A.C., Gardiner,A., Garfield,D.A., Garvin,B.E.,
            Gibson,G., Gilbert,D., Gnerre,S., Godfrey,J., Good,R., Gotea,V.,
            Gravely,B., Greenberg,A.J., Griffiths-Jones,S., Gross,S., Guigo,R.,
            Gustafson,E.A., Haerty,W., Hahn,M.W., Halligan,D.L., Halpern,A.L.,
            Halter,G.M., Han,M.V., Heger,A., Hillier,L., Hinrichs,A.S.,
            Holmes,I., Hoskins,R.A., Hubisz,M.J., Hultmark,D., Huntley,M.A.,
            Jaffe,D.B., Jagadeeshan,S., Jeck,W.R., Johnson,J., Jones,C.D.,
            Jordan,W.C., Karpen,G.H., Kataoka,E., Keightley,P.D.,
            Kheradpour,P., Kirkness,E.F., Koerich,L.B., Kristiansen,K.,
            Kudrna,D., Kulathinal,R.J., Kumar,S., Kwok,R., Lander,E.,
            Langley,C.H., Lapoint,R., Lazzaro,B.P., Lee,S.J., Levesque,L.,
            Li,R., Lin,C.F., Lin,M.F., Lindblad-Toh,K., Llopart,A., Long,M.,
            Low,L., Lozovsky,E., Lu,J., Luo,M., Machado,C.A., Makalowski,W.,
            Marzo,M., Matsuda,M., Matzkin,L., McAllister,B., McBride,C.S.,
            McKernan,B., McKernan,K., Mendez-Lago,M., Minx,P.,
            Mollenhauer,M.U., Montooth,K., Mount,S.M., Mu,X., Myers,E.,
            Negre,B., Newfeld,S., Nielsen,R., Noor,M.A., O'Grady,P.,
            Pachter,L., Papaceit,M., Parisi,M.J., Parisi,M., Parts,L.,
            Pedersen,J.S., Pesole,G., Phillippy,A.M., Ponting,C.P., Pop,M.,
            Porcelli,D., Powell,J.R., Prohaska,S., Pruitt,K., Puig,M.,
            Quesneville,H., Ram,K.R., Rand,D., Rasmussen,M.D., Reed,L.K.,
            Reenan,R., Reily,A., Remington,K.A., Rieger,T.T., Ritchie,M.G.,
            Robin,C., Rogers,Y.H., Rohde,C., Rozas,J., Rubenfield,M.J.,
            Ruiz,A., Russo,S., Salzberg,S.L., Sanchez-Gracia,A., Saranga,D.J.,
            Sato,H., Schaeffer,S.W., Schatz,M.C., Schlenke,T., Schwartz,R.,
            Segarra,C., Singh,R.S., Sirot,L., Sirota,M., Sisneros,N.B.,
            Smith,C.D., Smith,T.F., Spieth,J., Stage,D.E., Stark,A.,
            Stephan,W., Strausberg,R.L., Strempel,S., Sturgill,D., Sutton,G.,
            Sutton,G.G., Tao,W., Teichmann,S., Tobari,Y.N., Tomimura,Y.,
            Tsolas,J.M., Valente,V.L., Venter,E., Venter,J.C., Vicario,S.,
            Vieira,F.G., Vilella,A.J., Villasante,A., Walenz,B., Wang,J.,
            Wasserman,M., Watts,T., Wilson,D., Wilson,R.K., Wing,R.A.,
            Wolfner,M.F., Wong,A., Wong,G.K., Wu,C.I., Wu,G., Yamamoto,D.,
            Yang,H.P., Yang,S.P., Yorke,J.A., Yoshida,K., Zdobnov,E., Zhang,P.,
            Zhang,Y., Zimin,A.V., Baldwin,J., Abdouelleil,A., Abdulkadir,J.,
            Abebe,A., Abera,B., Abreu,J., Acer,S.C., Aftuck,L., Alexander,A.,
            An,P., Anderson,E., Anderson,S., Arachi,H., Azer,M.,
            Bachantsang,P., Barry,A., Bayul,T., Berlin,A., Bessette,D.,
            Bloom,T., Blye,J., Boguslavskiy,L., Bonnet,C., Boukhgalter,B.,
            Bourzgui,I., Brown,A., Cahill,P., Channer,S., Cheshatsang,Y.,
            Chuda,L., Citroen,M., Collymore,A., Cooke,P., Costello,M.,
            D'Aco,K., Daza,R., De Haan,G., DeGray,S., DeMaso,C., Dhargay,N.,
            Dooley,K., Dooley,E., Doricent,M., Dorje,P., Dorjee,K., Dupes,A.,
            Elong,R., Falk,J., Farina,A., Faro,S., Ferguson,D., Fisher,S.,
            Foley,C.D., Franke,A., Friedrich,D., Gadbois,L., Gearin,G.,
            Gearin,C.R., Giannoukos,G., Goode,T., Graham,J., Grandbois,E.,
            Grewal,S., Gyaltsen,K., Hafez,N., Hagos,B., Hall,J., Henson,C.,
            Hollinger,A., Honan,T., Huard,M.D., Hughes,L., Hurhula,B.,
            Husby,M.E., Kamat,A., Kanga,B., Kashin,S., Khazanovich,D.,
            Kisner,P., Lance,K., Lara,M., Lee,W., Lennon,N., Letendre,F.,
            LeVine,R., Lipovsky,A., Liu,X., Liu,J., Liu,S., Lokyitsang,T.,
            Lokyitsang,Y., Lubonja,R., Lui,A., MacDonald,P., Magnisalis,V.,
            Maru,K., Matthews,C., McCusker,W., McDonough,S., Mehta,T.,
            Meldrim,J., Meneus,L., Mihai,O., Mihalev,A., Mihova,T.,
            Mittelman,R., Mlenga,V., Montmayeur,A., Mulrain,L., Navidi,A.,
            Naylor,J., Negash,T., Nguyen,T., Nguyen,N., Nicol,R., Norbu,C.,
            Norbu,N., Novod,N., O'Neill,B., Osman,S., Markiewicz,E.,
            Oyono,O.L., Patti,C., Phunkhang,P., Pierre,F., Priest,M.,
            Raghuraman,S., Rege,F., Reyes,R., Rise,C., Rogov,P., Ross,K.,
            Ryan,E., Settipalli,S., Shea,T., Sherpa,N., Shi,L., Shih,D.,
            Sparrow,T., Spaulding,J., Stalker,J., Stange-Thomann,N.,
            Stavropoulos,S., Stone,C., Strader,C., Tesfaye,S., Thomson,T.,
            Thoulutsang,Y., Thoulutsang,D., Topham,K., Topping,I., Tsamla,T.,
            Vassiliev,H., Vo,A., Wangchuk,T., Wangdi,T., Weiand,M.,
            Wilkinson,J., Wilson,A., Yadav,S., Young,G., Yu,Q., Zembek,L.,
            Zhong,D., Zimmer,A., Zwirko,Z., Jaffe,D.B., Alvarez,P.,
            Brockman,W., Butler,J., Chin,C., Gnerre,S., Grabherr,M., Kleber,M.,
            Mauceli,E. and MacCallum,I.
  CONSRTM   Drosophila 12 Genomes Consortium
  TITLE     Evolution of genes and genomes on the Drosophila phylogeny
  JOURNAL   Nature 450 (7167), 203-218 (2007)
   PUBMED   17994087
REFERENCE   3  (residues 1 to 2095)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2015) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   4  (residues 1 to 2095)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2015) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave., Cambridge, MA 02138, USA
REFERENCE   5  (residues 1 to 2095)
  AUTHORS   Smith,D.R., Tao,W., Saranga,D.J., Brand,A., Ebling,H.,
            Rubenfield,M., Bosak,S., Garvin,B., McKernan,B., McKernan,K.,
            Parisi,M., Stelling,O., Lin,N., David,R., Gustafson,E., Zimin,A.,
            Roberts,M., York,J. and Sutton,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2006) Agencourt Bioscience Corporation, 500
            Cummings Center Suite 2450, Beverly, MA 01915, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to EDW65138.
            On Dec 21, 2015 this sequence version replaced XP_002054937.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 1.03
            Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Drosophila virilis"
                     /strain="TSC#15010-1051.87"
                     /db_xref="taxon:7244"
                     /chromosome="Unknown"
     Protein         1..2095
                     /product="uncharacterized protein"
                     /name="GJ19065 gene product from transcript GJ19065-RB"
                     /note="Dvir\GJ19065-PB"
     Region          281..549
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:278921"
     Region          621..822
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:278921"
     Region          1134..1391
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:278921"
     Region          <1397..1435
                     /region_name="Na_channel_gate"
                     /note="Inactivation gate of the voltage-gated sodium
                     channel alpha subunits; cd13433"
                     /db_xref="CDD:240441"
     Site            1414
                     /site_type="phosphorylation"
                     /note="phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:240441"
     Region          1465..1706
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:278921"
     CDS             1..2095
                     /gene="Dvir\GJ19065"
                     /locus_tag="Dvir_GJ19065"
                     /gene_synonym="dvir_GLEANR_3880; GJ19065"
                     /coded_by="XM_002054901.2:266..6553"
                     /inference="similar to AA sequence:INSD:AAN77520.1"
                     /artificial_location="low-quality sequence region"
                     /db_xref="FLYBASE:FBpp0395544"
                     /db_xref="GeneID:6631335"
                     /db_xref="FLYBASE:FBgn0206210"
ORIGIN      
        1 midrlqirrl gaaarrkrag ggssfhtvsg ittpatasts sssgnsftpq qhlhshphqh
       61 qhsiigssqq qisqislnps sgsspcnglg trqdassvln spttivnsgs cnstaygmqq
      121 qvgglstaav tstptvigsh tasnalnnga ggavcpvggv sgglnllgsi gglgggaava
      181 gmgicggiss tvgsaaitgv ppiglgiatg ignkimlgrk qslkggepfl adygpeesln
      241 esadiewvnk lwvrrlmrlc alvslasvsl ntpktferhp slqyitfvsd tavtvlftae
      301 miakmhirgv lngevpylkd hwcqfdasmv sflwvsiilq ifevleivpk fsylsimrap
      361 rplimirflr vflkfsmpks rinqifkrss qqiynvtlff lffmslygll gvqffgelkn
      421 hcvmnntgyd qlgrpvltin slaipdtfcs mdpdsgyqcs pgmrcmkmdf lssyvigfng
      481 fediatsift vyqaasqegw vfimyraids lpawraafyf stmifflawl vknvfiavit
      541 etfneirvqf qqmwgarghi qktaasqils gndsgwrlvt iddnkhggla petchailrs
      601 pyfrmlvmsv ilangivtat mafkhdgrpr hvfyeryyyi eviftclldl etmfkiyclg
      661 wrgyykhsih kfelllaagt slhiipifyl sgltyfqvlr vvrlikaspm legfvykifg
      721 pgkklgslii ftmclliiss sismqlfcfl cdftkfesfp eafmsmfqil tqeawvevmd
      781 etmirtsktl tplvavyfil yhlfvtlivl slfvavildn leldedikkl kqlkfreqsa
      841 eiketlpfrl rifekfpdsp qmtilhripn dfilpkvres fmkhfviele tedpslvenc
      901 krpmsecwes nvvfrkqkpv rimnktakvr aagsslrkla ithiindsnn qrlmlgdsam
      961 lpvvgtkggl ksqgtithsk pwrvdqkkfg srsirrsvrs gsiklkqtye hlmengdiaa
     1021 apransgrar phdldikllq akrqqaemrr nqreedlren hpffdtplfl vpressfrki
     1081 cqkivharyd arlkdpltgk erkvqykslh nflglvtyld wvmifattls cismmfetps
     1141 yrlmdhptlq iaeygfvifm slelalkila dglfftpkay ikdvaaaldv fiyvvstsfl
     1201 cwmphniptn saaqllmilr cvrplriftl vphmrkvvye lcrgfkeill vstllillmf
     1261 ifasygvqly ggrlarcndp tiirredcvg vfmrrvfvtk mkltpgpdes ypamlvprvw
     1321 anprrfnfdn igdamltlfe vlsfkgwldv rdvlikavgp ihaiyihiyi flgcmigltl
     1381 fvgvvianys enkgtalltv dqrrwcdlkk rlkiaqplhl pprpdgrkir aftyditqhi
     1441 ifkrviavvv linsmllsit wikgevhter lvivsavltf vfvvevvmkn iaftprgywq
     1501 srrnrydllv tvagviwiil qtilrndlsy ffgfmvvilr fftitgkhtt lkmlmltvgv
     1561 svcksffiif gmfllvffya lagtilfgtv kygegigrra nfgspvtgva mlcrivtged
     1621 wnkimhdcmv qppyctlgen ywetdcgnft asliyfctfy viftyivlys tsgxvtnell
     1681 qniisydisr aaiimenfsl fysneedall syadirnfqn twnivdihqr gvipvrrvkf
     1741 ilrllkgrle cdpqkdrllf kymcyeldkl hngedvtfhd vinmlsyrsv dirkalqlee
     1801 llareefeyl veeevakmti rtwlegclkk iraqnaskqq nsliaglrat neqlvmranv
     1861 qedktsggil eksaistisg avagtcppts dafsptlsst endekdvsss avmlphtdsh
     1921 vssvrhvmtv gkrayalnrs dstgssagrk flaptssdpq qrstlsdker lhissqqrkk
     1981 nsmttlphvv qlgqlgkqre tnksssffsq lnseigqfyy ptinatavav aalhsfadhh
     2041 qhlhgplssp saiisqligg sgklipfnnq anavyevhdw wqeqvlcsqt sdeev
//
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