GenomeNet

Database: RefSeq
Entry: XP_004487997
LinkDB: XP_004487997
Original site: XP_004487997 
LOCUS       XP_004487997            1168 aa            linear   PLN 08-JUN-2015
DEFINITION  PREDICTED: DNA ligase 4 isoform X2 [Cicer arietinum].
ACCESSION   XP_004487997
VERSION     XP_004487997.1
DBLINK      BioProject: PRJNA190909
DBSOURCE    REFSEQ: accession XM_004487940.2
KEYWORDS    RefSeq.
SOURCE      Cicer arietinum (chickpea)
  ORGANISM  Cicer arietinum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae;
            Cicereae; Cicer.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_004515219.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Cicer arietinum Annotation Release
                                           101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 6.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Cicer arietinum"
                     /cultivar="CDC Frontier"
                     /db_xref="taxon:3827"
                     /chromosome="Ca1"
                     /tissue_type="etiolated seedlings"
                     /country="India"
                     /collection_date="Oct-2011"
     Protein         1..1168
                     /product="DNA ligase 4 isoform X2"
                     /calculated_mol_wt=132835
     Region          6..181
                     /region_name="DNA_ligase_A_N"
                     /note="DNA ligase N terminus; pfam04675"
                     /db_xref="CDD:282522"
     Region          61..600
                     /region_name="dnl1"
                     /note="DNA ligase I, ATP-dependent (dnl1); TIGR00574"
                     /db_xref="CDD:273147"
     Region          214..446
                     /region_name="Adenylation_DNA_ligase_IV"
                     /note="Adenylation domain of DNA Ligase IV; cd07903"
                     /db_xref="CDD:185713"
     Site            order(250..253,255..257,272,302,313,341,417,420,422,437,
                     439)
                     /site_type="active"
                     /db_xref="CDD:185713"
     Site            order(252,255..257,271..273,275,277,317..318,321..323,417,
                     439,441)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:185713"
     Region          448..592
                     /region_name="OBF_DNA_ligase_IV"
                     /note="The Oligonucleotide/oligosaccharide binding
                     (OB)-fold domain of ATP-dependent DNA ligase IV is a
                     DNA-binding module that is part of the catalytic core
                     unit; cd07968"
                     /db_xref="CDD:153437"
     Site            order(470,493..494,496..501,560,563..564,566,571..574,576)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:153437"
     Region          656..726
                     /region_name="BRCT"
                     /note="breast cancer carboxy-terminal domain; smart00292"
                     /db_xref="CDD:214602"
     Site            order(673,677,680,683,685)
                     /site_type="other"
                     /note="Dimer interface [polypeptide binding]"
                     /db_xref="CDD:237994"
     Site            order(721,725)
                     /site_type="other"
                     /note="BRCT sequence motif"
                     /db_xref="CDD:237994"
     Region          803..897
                     /region_name="BRCT"
                     /note="breast cancer carboxy-terminal domain; smart00292"
                     /db_xref="CDD:214602"
     Site            order(820,824,827,841,843)
                     /site_type="other"
                     /note="Dimer interface [polypeptide binding]"
                     /db_xref="CDD:237994"
     Site            order(892,896)
                     /site_type="other"
                     /note="BRCT sequence motif"
                     /db_xref="CDD:237994"
     CDS             1..1168
                     /gene="LOC101512446"
                     /coded_by="XM_004487940.2:147..3653"
                     /db_xref="GeneID:101512446"
ORIGIN      
        1 mteqtkfsvl cslltwtqrt kspakkrakf rkfldsfctd rnyfpairli lpnldrergs
       61 yglkesvlat slidalglsk dshdalrlvn wrkggsktgv nagnfalvas evlqlrqgta
      121 sggltikeln dlldqlssse nraektlvls tliqktnaqe mkwiimiilk dlklgiseks
      181 ifhefhpdae dlfnvtcdlk lvceklrdrn qrhkrqdiev gkavrpqlak rvanaaeawk
      241 klhgkevvae ckfdgdriqi hkngteihff srnfldhsey ahamseiivq nilvdrcild
      301 gemlvwdtsl nrfaefgsnq eiakaardgl dsnrqlcyva fdilyfgdts vihqtlkerh
      361 eilrkvvrpm kgrleillpn gginshrssg epcwsfiahn adeverffke tienrdegiv
      421 vkdlsskwep sdrsgkwlkl kpeyiqagsd ldvliiggyy gsgrrggeva qflvglaerp
      481 spnthpkrfi sfcrvgtgls ddeleavvtk lkpyfrkyey pkkgppnfyq vtnhskerpd
      541 vwvdspeksi ilsitsdirt iesevfaapy clrfpridrv rydkpwyecl dvqsfielvq
      601 ssngttqrdt eygskkdskp krmkpsirge kknvsivpsh liqtdvssvt ggslmfsnmm
      661 fyfvnvppsh slesfhkiva enggtfsmnl nnsvthcvaa dskgfkfdaa krrgdiihyt
      721 wvldcykqkk lvrlqpkyfl flseltkkkl qeeidefsds yfldldlgdi kqllsninrs
      781 gsedvstvdh yrkkycpkdk wsvfngcsiy fdttmpslke dwqfllvlsl krfklevlmg
      841 ggkvtsnlnf athvvalflp schnheeies sftlverkll rskrlhvvns kwledclkss
      901 qrlsedtysl kpygieesta edcehelavd adlikdnved qnisfsnkes kqsrakaasg
      961 dslalasqek rglrkrgrpa grgikkvktd gnqarkarsq iakkraklce yesdesdsld
     1021 kkpyeqeadi aegsldfyne hsephetekt hdvqgtkave cseqnkgiel vdfrdkqhen
     1081 msvpeiemnd vhndenshvt ekleiltdpv qamlldmips latekveqpl nsyveeekpp
     1141 eisneepsts kkkkvsfkai agdllkdw
//
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