LOCUS       XP_006264679            1978 aa            linear   VRT 21-SEP-2023
DEFINITION  sodium channel protein type 8 subunit alpha isoform X1 [Alligator
            mississippiensis].
ACCESSION   XP_006264679
VERSION     XP_006264679.2
DBLINK      BioProject: PRJNA1014489
DBSOURCE    REFSEQ: accession XM_006264617.4
KEYWORDS    RefSeq.
SOURCE      Alligator mississippiensis (American alligator)
  ORGANISM  Alligator mississippiensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Crocodylia; Alligatoridae;
            Alligatorinae; Alligator.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_081838) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Nov 10, 2015 this sequence version replaced XP_006264679.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030867095.1-RS_2023_09
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 09/14/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1978
                     /organism="Alligator mississippiensis"
                     /isolate="rAllMis1"
                     /db_xref="taxon:8496"
                     /chromosome="15"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /country="USA: Delacriox, Louisiana"
                     /lat_lon="29.7616 N 89.7909 W"
                     /collection_date="2020-11"
                     /collected_by="Christopher Murray"
     Protein         1..1978
                     /product="sodium channel protein type 8 subunit alpha
                     isoform X1"
                     /calculated_mol_wt=225075
     Region          131..421
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:425730"
     Region          389..>455
                     /region_name="AtpF"
                     /note="FoF1-type ATP synthase, membrane subunit b or b'
                     [Energy production and conversion]; COG0711"
                     /db_xref="CDD:223783"
     Region          544..699
                     /region_name="Na_trans_cytopl"
                     /note="Cytoplasmic domain of voltage-gated Na+ ion
                     channel; pfam11933"
                     /db_xref="CDD:432199"
     Region          750..963
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:425730"
     Region          989..1190
                     /region_name="Na_trans_assoc"
                     /note="Sodium ion transport-associated; pfam06512"
                     /db_xref="CDD:428983"
     Region          1195..1471
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:425730"
     Region          1463..1515
                     /region_name="Na_channel_gate"
                     /note="Inactivation gate of the voltage-gated sodium
                     channel alpha subunits; cd13433"
                     /db_xref="CDD:240441"
     Site            1477..1480
                     /site_type="other"
                     /note="putative hydrophobic latch"
                     /db_xref="CDD:240441"
     Region          1520..1774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:425730"
     Region          1786..1833
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:435642"
     CDS             1..1978
                     /gene="SCN8A"
                     /coded_by="XM_006264617.4:49..5985"
                     /db_xref="GeneID:102575158"
ORIGIN      
        1 maarliappg pdsfkcftpe slaniekria eekkrkrpkq dsshrddded skpkpnsdle
       61 agkslpfiyg dipkglvavp ledfdpyymt qktfvvlnrg ktlfrfsatp alyilspfnl
      121 lrriaikili hsvfsmiimc tiltncvfmt fsnppewskn veytftgiyt feslvkiiar
      181 gfcidgftfl rdpwnwldfs vimmayvtef vdlgnvsalr tfrvlralkt isvipglkti
      241 vgaliqsvkk lsdvmiltvf clsvfaligl qlfmgnlrnk cviwpinlne tvlengsrgf
      301 dweeytnnks nfytipgald pllcgnssda gqcpegytcm kagrnpnygy tsfdtfswaf
      361 lalfrlmtqd fwenlyqltl raagktymif fvlvifvgsf ylvnlilavv amayeeqnqa
      421 tleeaeqkea efkamleqlk kqqeeaqaaa mvtsagtvse daveddgggr vsrssseisk
      481 lssksakerr nrrkkrkdke lsegdekcdn ekvfksesed gmrrkafrlp dnrlgrkfsi
      541 mnqsllsipg spflsrhnsk ssifsykgrf rdpgsenefa ddehstvees egrrdslfip
      601 irgrdrrssy sgysgysqgs rssrifpnlr rnvkrnstvd cngvvsligg ptsnvpggrl
      661 lpegttevai kkkptgsllv smdqlnasfg rkdrtnsimt vvtntlveel eesqrkcppc
      721 wykfantfli wechphwikl keivnlivmd pfvdlaitic ivlntlfmam ehhpmtpqfe
      781 hvlsvgnlvf tgiftaemfl kliamdpyyy fqegwnifdg fivslslmel glqdveglsv
      841 lrsfrllrvf klakswptln mlikiignsv galgnltlvl aiivfifavv gmqlfgksyk
      901 ecvckihpdc vlprwhmhdf fhsflivfrv lcgewietmw dcmevagqam clivfmmvmv
      961 ignlvvlnlf lalllssfsa dnlaatdddg emnnlqisvi rikkgiawtk ikvhefmqah
     1021 fkqreadevk pldelydkkv ncianhmgad inrdidyqkn gngttsgigs svekyiided
     1081 hmsfinnpnl tvrvpiavge sdfenlnted fssdtdpdgs keklddtsss egstidikpe
     1141 veevpvevpe eyldpdpcft egcfkrftcc qvnieeglgk swwtlrktcf livehnwfet
     1201 fiifmillss galafediyi eqrktirtil eyadkvftyi filemllkwc aygfvkfftn
     1261 awcwldfliv avslvslian algyselgai kslrtlralr plralsrfeg mrvvvnalvg
     1321 aipsimnvll vclifwlifs imgvnlfagk yhycfnesse erfdievvnn ktdcealmpp
     1381 nsteirwknv kinfdnvgag ylallqvatf kgwmdimyaa vdsrkpeeqp kyedniymyi
     1441 yfvifiifgs fftlnlfigv iidnfnqqkk kfggqdifmt eeqkkyynam kklgskkpqk
     1501 piprplnrvq gavfdfvtqq afdivimili clnmvtmmve tdtqskqmed ilswinlvfv
     1561 ifftcecvlk mfalrhyyft vgwnifdfvv vilsivgmfl aeiiekyfvs ptlfrvirla
     1621 rigrilrlik gakgirtllf almmslpalf niglllflvm fifsifgmsn fayvkheagi
     1681 ddmfnfetfg nsmiclfqit tsagwdglll pilnrppdcd lykehpgsgf kgdcgnpsvg
     1741 ifffvsyiii sflivvnmyi aiilenfsva teesadplse ddfetfyeiw ekfdpdatqf
     1801 ieyckladfa dalehplrvp kpntieliam dlpmvsgdri hcldilfaft krvlgdsgel
     1861 dilrqqmeer fvasnpskvs yepitttlrr kqedvsavvi qrayrvrlar rgfisrkpas
     1921 tklengganr ekkegtpsta slpsydsvtk pekekqqrae egrrerakrq rdvreskc
//