LOCUS XP_017451791 379 aa linear ROD 11-JUN-2023
DEFINITION sialidase-2 isoform X1 [Rattus norvegicus].
ACCESSION XP_017451791
VERSION XP_017451791.1
DBLINK BioProject: PRJNA677964
DBSOURCE REFSEQ: accession XM_017596302.2
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051344.1) annotated using gene prediction method: Gnomon,
supported by EST evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..379
/organism="Rattus norvegicus"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="9"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
Protein 1..379
/product="sialidase-2 isoform X1"
/calculated_mol_wt=42304
Region 10..367
/region_name="Sialidase_non-viral"
/note="Non-viral sialidases; cd15482"
/db_xref="CDD:271234"
Region 20..74
/region_name="Sialidase propeller 1"
/note="Sialidase propeller 1 [structural motif]"
/db_xref="CDD:271234"
Site order(21,47,218,237,303,333,354)
/site_type="active"
/note="catalytic site [active]"
/db_xref="CDD:271234"
Region 84..142
/region_name="Sialidase propeller 2"
/note="Sialidase propeller 2 [structural motif]"
/db_xref="CDD:271234"
Region 156..211
/region_name="Sialidase propeller 3"
/note="Sialidase propeller 3 [structural motif]"
/db_xref="CDD:271234"
Region 217..258
/region_name="Sialidase propeller 4"
/note="Sialidase propeller 4 [structural motif]"
/db_xref="CDD:271234"
Region 270..326
/region_name="Sialidase propeller 5"
/note="Sialidase propeller 5 [structural motif]"
/db_xref="CDD:271234"
Region 332..367
/region_name="Sialidase propeller 6"
/note="Sialidase propeller 6 [structural motif]"
/db_xref="CDD:271234"
CDS 1..379
/gene="Neu2"
/coded_by="XM_017596302.2:129..1268"
/db_xref="GeneID:29204"
/db_xref="RGD:3164"
ORIGIN
1 metcpvlqke tlfhtevyay ripallylkk qktllafaek rasrtdehae livlrrgsyn
61 gatnhvkwqp eevvtqaqle ghrsmnpcpl ydkqtktlfl ffiavpgrvs eqhqlqtrvn
121 vtrlcrvtst dygmnwspvq dltettigst hqdwatfavg pghclqlrnr agsllvpaya
181 yqklhpvhkp tpfafcfisl dhghtwelgn fvsenslecq vaevgtgahr vvylnarsfi
241 garvqaqspn dgldfqdnqv vsklvepphg chgsvvafhs ptskpdaldm wllythptds
301 rnrtnlgvyl nqtpldptaw septllatgt caysdlqnmg rgpdgspqfg clyesgnyde
361 iiflmftlkq afptvhgaq
//