LOCUS       YP_003132042             421 aa            linear   CON 10-JUN-2013
DEFINITION  seryl-tRNA synthetase [Saccharomonospora viridis DSM 43017].
ACCESSION   YP_003132042
VERSION     YP_003132042.1  GI:257054210
DBLINK      Project: 59055
            BioProject: PRJNA59055
DBSOURCE    REFSEQ: accession NC_013159.1
KEYWORDS    .
SOURCE      Saccharomonospora viridis DSM 43017
  ORGANISM  Saccharomonospora viridis DSM 43017
            Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
            Pseudonocardineae; Pseudonocardiaceae; Saccharomonospora.
REFERENCE   1  (residues 1 to 421)
  AUTHORS   Pati,A., Sikorski,J., Nolan,M., Lapidus,A., Copeland,A., Glavina
            Del Rio,T., Lucas,S., Chen,F., Tice,H., Pitluck,S., Cheng,J.F.,
            Chertkov,O., Brettin,T., Han,C., Detter,J.C., Kuske,C., Bruce,D.,
            Goodwin,L., Chain,P., D'haeseleer,P., Chen,A., Palaniappan,K.,
            Ivanova,N., Mavromatis,K., Mikhailova,N., Rohde,M., Tindall,B.J.,
            Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P.,
            Kyrpides,N.C. and Klenk,H.P.
  TITLE     Complete genome sequence of Saccharomonospora viridis type strain
            (P101)
  JOURNAL   Stand Genomic Sci 1 (2), 141-149 (2009)
   PUBMED   21304650
  REMARK    Publication Status: Online-Only
REFERENCE   2  (residues 1 to 421)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-AUG-2009) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 421)
  AUTHORS   Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E.,
            Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N.,
            Mavromatis,K., Ivanova,N., Mikhailova,N., Brettin,T., Detter,J.C.,
            Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F.,
            Hugenholtz,P., Woyke,T., Wu,D., Klenk,H.-P. and Eisen,J.A.
  CONSRTM   US DOE Joint Genome Institute (JGI-PGF)
  TITLE     Direct Submission
  JOURNAL   Submitted (10-AUG-2009) US DOE Joint Genome Institute, 2800
            Mitchell Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to ACU95215.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Saccharomonospora viridis DSM 43017"
                     /strain="DSM 43017"
                     /culture_collection="DSM:43017"
                     /db_xref="taxon:471857"
                     /note="type strain of Saccharomonospora viridis DSM 43017"
     Protein         1..421
                     /product="seryl-tRNA synthetase"
                     /EC_number="6.1.1.11"
                     /calculated_mol_wt=46529
     Region          1..419
                     /region_name="PRK05431"
                     /note="seryl-tRNA synthetase; Provisional"
                     /db_xref="CDD:235461"
     Region          1..106
                     /region_name="Seryl_tRNA_N"
                     /note="Seryl-tRNA synthetase N-terminal domain; pfam02403"
                     /db_xref="CDD:217020"
     Region          117..411
                     /region_name="SerRS_core"
                     /note="Seryl-tRNA synthetase (SerRS) class II core
                     catalytic domain. SerRS is responsible for the attachment
                     of serine to the 3' OH group of ribose of the appropriate
                     tRNA. This domain It is primarily responsible for
                     ATP-dependent formation of the enzyme...; cd00770"
                     /db_xref="CDD:238393"
     Site            order(151..156,159..165,169,171,173,176,188..191,193..195,
                     197,215..216,218,222,231,235,239,255,276,410..411)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:238393"
     Site            order(158,227,229,258,260,266,269,272,274,277,279,281,
                     345..348,378,380,385)
                     /site_type="active"
                     /db_xref="CDD:238393"
     Site            188..195
                     /site_type="other"
                     /note="motif 1"
                     /db_xref="CDD:238393"
     Site            257..260
                     /site_type="other"
                     /note="motif 2"
                     /db_xref="CDD:238393"
     Site            order(381..382,385)
                     /site_type="other"
                     /note="motif 3"
                     /db_xref="CDD:238393"
     CDS             1..421
                     /locus_tag="Svir_01270"
                     /coded_by="NC_013159.1:133732..134997"
                     /note="catalyzes a two-step reaction, first charging a
                     serine molecule by linking its carboxyl group to the
                     alpha-phosphate of ATP, followed by transfer of the
                     aminoacyl-adenylate to its tRNA"
                     /transl_table=11
                     /db_xref="GeneID:8385465"
CONTIG      join(WP_012795648.1:1..421)
ORIGIN      
        1 midlrtlree pdvvrasqra rgedvgvvdr llsldaerrs aiakadnlra eqkqlgkrig
       61 kasgeereal largkelaaq vkeaeaeqnr aseefeklyn vvpnivhpdv peggeddyvv
      121 lkrvgtpref dftpkdhlel gealgaidte rgakvsgarf yfltgvgaql qlallnmaaa
      181 qavekgfqlm ippvlvrpei magtgflgah ssevyrladd dlylvgtsev slagyhadei
      241 ldlsngplry agwsscfrre agsygkdtrg iirvhqfdkv emfifcrpse aeaeheklla
      301 weeemlakie vpyrvidtaa gdlgtsaark ydceawiptq qayreltsts ncttyqarkl
      361 svryrdedgr pqhaatlngt lattrwivai lenhqqpdgs vrvpeamqpf lggrtvltpi
      421 d
//