LOCUS       YP_008563096             477 aa            linear   PLN 04-APR-2023
DEFINITION  ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
            (chloroplast) [Solanum lycopersicum].
ACCESSION   YP_008563096
VERSION     YP_008563096.1
DBLINK      BioProject: PRJNA927338
DBSOURCE    REFSEQ: accession NC_007898.3
KEYWORDS    RefSeq.
SOURCE      chloroplast Solanum lycopersicum (tomato)
  ORGANISM  Solanum lycopersicum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
            Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon.
REFERENCE   1  (residues 1 to 477)
  AUTHORS   Daniell,H., Lee,S.-B., Grevich,J., Saski,C., Quesada-Vargas,T.,
            Guda,C., Tomkins,J. and Jansen,R.K.
  TITLE     Complete chloroplast genome sequences of Solanum tuberosum, Solanum
            lycopersicum and comparative analyses with other Solanaceae genomes
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 477)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-SEP-2013) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 477)
  AUTHORS   Daniell,H., Lee,S.-B., Grevich,J., Saski,C., Quesada-Vargas,T.,
            Guda,C., Tomkins,J. and Jansen,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2006) Molecular Biology & Microbiology,
            University of Central Florida, Biomolecular Science, Building #20,
            Orlando, FL 32816-2364, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to ABC56308.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Solanum lycopersicum"
                     /organelle="plastid:chloroplast"
                     /cultivar="LA3023"
                     /specimen_voucher="Clemson University Genomics Institute"
                     /db_xref="taxon:4081"
                     /common="tomato"
                     /authority="Lycopersicon esculentum (L.)"
     Protein         1..477
                     /product="ribulose-1,5-bisphosphate carboxylase/oxygenase
                     large subunit"
                     /calculated_mol_wt=52823
     Region          1..475
                     /region_name="rbcL"
                     /note="ribulose-1,5-bisphosphate carboxylase/oxygenase
                     large subunit; CHL00040"
                     /db_xref="CDD:176981"
     Site            order(45,60,62..63,65..72,75,80,106..110,112,114..115,
                     118..119,121..123,125..128,130..132,175..179,204..205,
                     207..211,213,243..248,253,268,271,273..276,278..279,294,
                     296..297,299..301,303..304,307..309,331..336,381..383,
                     404..405,407..410,412..413,462,465,467,469..470,472)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:173977"
     Site            order(60,65..66,123,173,175,177,203..204,294..295,327,
                     334..335,379..381,403..404)
                     /site_type="active"
                     /db_xref="CDD:173977"
     Site            order(156,161,163..167,194..196,226,229..235,258,263,289,
                     397,410..411,415,418,421..422,425..426,429,431..433,451,
                     453)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:173977"
     Site            201
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:173977"
     Site            203..204
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:173977"
     CDS             1..477
                     /gene="rbcL"
                     /locus_tag="LyesC2p061"
                     /coded_by="NC_007898.3:56683..58116"
                     /transl_table=11
                     /db_xref="GeneID:3950460"
ORIGIN      
        1 mspqtetkas vgfkagvkey kltyytpeyq tkdtdilaaf rvtpqpgvpp eeagaavaae
       61 sstgtwttvw tdgltsldry kgrcyrierv vgekdqyiay vaypldlfee gsvtnmftsi
      121 vgnvfgfkal ralrledlri ppayvktfqg pphgiqverd klnkygrpll gctikpklgl
      181 saknygravy eclrggldft kddenvnsqp fmrwrdrflf caealfkaqt etgeikghyl
      241 natagtceem ikravfarel gvpivmhdyl tggftanttl ahycrdngll lhihramhav
      301 idrqknhgih frvlakalrm sggdhihsgt vvgklegerd itlgfvdllr ddfveqdrsr
      361 giyftqdwvs lpgvlpvasg gihvwhmpal teifgddsvl qfgggtlghp wgnapgavan
      421 rvaleacvka rnegrdlare gneiireack wspelaaace vwkeivfnfa avdvldk
//