KEGG T01352: REQ

Rhodococcus equi: REQ_42500

Entry

REQ_42500 CDS T01352

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

req Rhodococcus equi

Pathway

req03410	Base excision repair
req03420	Nucleotide excision repair
req03430	Mismatch repair
req03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:req03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:req03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:req03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:req03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

312141559

NCBI-GeneID:

9966437

UniProt:

E4W9U2

Position

complement(4516724..4517797)

AA seq 357 aa
MDLPIAPPLQPMLAKAASGVPEQPADEPVWSYEPKWDGFRAIVFRDGADVVLGSRGGKDL
ARYFPEMVDAVRAELPERCVVDGELVVPREIGGRTRLDWGSLSERIHPADSRVRLLAAET
PAQFIGFDLLALGDDDFTKRAFAERRAALLGAIGGGPSCHVTAATRDAATAERWFETFEG
AGLDGVVAKRLDGHYLPNKREMVKVKHSRTADVVAIGYRPHKSQPGIGSILLGLYGGGEL
HMVGGASAFTAKRRVELLAELEPLRVGDDVVAEGEATRWRSSADRSWVPLRPELVLEVAY
DQMEGGLGERGSQAGVRFRHAARFLRWRPDRDPQSCTFEQLEVPLRYDLADVLTGES

NT seq 1074 nt +upstreamnt +downstreamnt
gtggatcttccgatcgcgccacccctgcagccgatgttggccaaggccgcatccggagtg
cccgaacagccggccgacgagcccgtgtggtcgtacgagccgaagtgggacggattccgt
gccatcgtcttccgcgacggcgccgacgtcgtgctgggctcccgtggcggcaaggacctg
gcgcgctacttcccggagatggtcgacgcggtgcgcgcggagttgccggagcggtgcgtc
gtcgacggtgaactggtggtgccccgcgagatcggcggacgcacgcggctggactggggt
tcgctgtccgagcgcatccatcccgccgacagccgcgtgcggctgctcgccgccgagacc
ccggcccagttcatcgggttcgatctgctggcgctcggcgacgacgacttcacgaaacgt
gccttcgcggagcggcgggcggccctgctcggggcgatcggcggcgggccgagctgtcac
gtcaccgccgcgacgcgcgacgccgccaccgccgagcgctggttcgagacgttcgagggc
gccggactggacggcgtcgtcgccaaacgcctcgacggccactacctgccgaacaagcgg
gagatggtgaaggtcaagcactcccgaacagcagatgtcgtggcgatcggctaccggccg
cacaagagtcagccgggcatcgggtcgatcctgctgggcctctacggcggcggcgagctg
cacatggtcggcggggcgtcggcgttcaccgcgaagcggcgcgtcgagctgctggccgaa
ctcgaaccgttgcgggtgggcgacgacgtcgtcgccgagggcgaggcgacgcggtggcgg
tcgagtgccgaccgcagttgggtgccgctgcgccccgagctggtcctcgaggtcgcgtac
gaccagatggaaggcggtctgggggagcgcggcagccaggccggggtccgcttccggcac
gccgcccggttcctgcgctggcgtccggaccgcgacccgcagtcgtgcacgttcgagcaa
ctcgaggtcccgctgcgctacgacctcgccgacgtcctcacaggagagagctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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