KEGG T00881: RER

Rhodococcus erythropolis: RER_45220

Entry

RER_45220 CDS T00881

Gene name

ligD

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rer Rhodococcus erythropolis

Pathway

rer03410	Base excision repair
rer03420	Nucleotide excision repair
rer03430	Mismatch repair
rer03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rer03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rer03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rer03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rer03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

NITE:

UniProt:

Position

complement(4959100..4961376)

AA seq 758 aa
MATTDRGQITLDGTTVSVTNLGKIFYPESGTTKAEVIDYYTRIAAVMLPHVVGRPGTRKR
WPNGVDGQSFFEKNLASSAPQWLTRASLQHSDRVVTYPIFDSVASLAWLGQQAALELHVP
QWRFDGSERGPATRLVFDLDPGEGVGLAECAEVARSIRDLVATLGWTAYPVTSGSKGIHL
YVPLDRALDGSGASTVAKQIATGLEKLHPDLVTATMARNVRAGKIFVDWSQNNAAKTTIA
PYSMRGRDQPYVAAPRSWDELDDPKLRHLLFDEVLERVESDGDLLGDLDPPVSAAVADTL
AHYRNKRSADRTPEPIPAAVANETAGNTFVIQEHHARRLHYDVRLERDGVLVSWAVPKGV
PTSAGENRLAVHTEDHPLEYATFAGTIPKGEYGGGSMTIWDSGTYETEKWREDEVIVRLS
GERVQGRFALIRTKGDQWLMHLMKDQNASFGTEFPKNLEPMLATAGTLEGLDPQEWAFEG
KWDGIRVILEYRSGTMSLRSRAGNDKTRDYPALAGLAAVLDGHDVVLDGEVVAYNDAGVT
DFGLLQRGGEPVFLAFDLLYLDGVSLLRKSYSDRRTVLNALAGKVGELEVPPQIEGTAEN
ALEVSTDAGWEGIVAKRRASVYLPGRRGSSWIKVKNWRTQEVVIGGWRTGQGNRAQGIGA
LLMGIPGEDGLTYVGRVGTGFSDRDLESLLAVLEPLRQKESPFEEELPADDRKGAVWVRP
ELVGEARFMDWTATGRLRHPSWRGLREDKKPGDVTGRE

NT seq 2277 nt +upstreamnt +downstreamnt
atggcaacgacggatcggggtcagatcactctcgacggcacaaccgtgtccgtgaccaat
ctgggcaagatcttctaccccgagagcggcaccacgaaggccgaagtcatcgactactac
acccgtatcgccgcagtcatgcttccgcatgtcgtcggtagacctggtactcgtaagcgt
tggcccaacggtgtggacggtcagtccttcttcgagaagaacctggcgtcgtctgccccg
cagtggctcacgcgtgcgtcgctgcaacattctgatcgcgtcgtcacttacccgattttc
gattccgttgcatccctggcgtggctggggcaacaggcggcactcgaattacacgttccc
caatggcgattcgacggttccgagcgtggtccggcgacacgactggtattcgatctcgac
ccgggcgaaggcgtcggattggccgagtgcgccgaggtggcgaggtcgattcgagatctg
gtcgcaactctggggtggactgcctatccggtaaccagtggtagcaagggaatccacctc
tacgtaccactggatcgagccttggacggcagtggtgcgtcgactgtcgccaagcagatc
gccaccgggctcgagaagcttcacccggatctcgtcaccgcgacgatggcgcgaaatgtc
cgggcaggcaagatcttcgtggactggagtcagaacaatgcagccaagaccaccattgcg
ccgtattcgatgcgcggtcgcgatcaaccctatgttgccgcgccgcgcagttgggacgaa
ctcgacgatccgaaactgcgccacctgctgttcgacgaggttctggagcgcgtcgaatcc
gacggtgatctgctgggcgatctggatccgccggtctcggcggctgtagccgatacgttg
gcgcactatcgcaacaagcggtcggccgaccggacaccggagccgatccctgctgcggtg
gccaacgagacagcgggcaatacctttgttattcaagaacatcacgccagacgattgcat
tacgacgttcgcctcgagcgggatggtgtgctcgtgtcctgggcagtcccgaagggtgtg
ccgaccagtgccggagaaaatcggttggccgtgcacaccgaagatcatccgctcgaatac
gccacgttcgcgggcacgattccgaagggggagtacggcggcggttcgatgacgatctgg
gattccgggacatacgagaccgagaagtggcgtgaagacgaggtgatcgtgcgcttgagt
ggggagcgggtgcagggacgcttcgcgctgatccggacaaagggtgatcagtggttgatg
catctgatgaaggatcagaatgcgagtttcggaacggagtttcccaagaatctcgagccg
atgcttgccaccgctggaacgctcgaaggtctcgacccgcaggagtgggccttcgaagga
aagtgggacgggattcgagtgattctcgaatatcgttcgggcacaatgtcgcttcgcagt
cgcgcgggtaacgacaagacccgggactatccagcccttgccgggttggccgcggtgctg
gacggtcatgacgtggttctcgacggtgaggtggtggcgtacaacgacgcgggagttaca
gatttcggcctcctccagcgaggtggggaaccggtgttcctggccttcgatcttctgtac
ctcgacggagtgtctttgctgcggaagtcctattcggatcgccgcaccgtgttgaatgcg
ttggcgggcaaggtcggtgagctcgaggtaccaccgcagatcgagggcacggcggagaac
gccttggaggtgagtaccgatgccgggtgggaagggattgtcgccaaacgtcgtgcatcg
gtgtaccttccggggcggcgggggtcgagttggatcaaggtgaagaactggcgcacccaa
gaggtggtgatcggtgggtggcgcaccgggcagggcaatcgagcgcaagggatcggggcg
ctgctcatgggaattccgggtgaggatggattgacctacgtgggacgcgtcggtaccggc
ttcagtgatcgtgatttggagtcactgcttgcggtgctggaaccgttgcgtcagaaggaa
agtccgttcgaggaggaacttccagcagatgaccgcaagggtgcggtgtgggtgaggcct
gaactcgtcggtgaggcgcggttcatggattggacggcgaccggacgccttcgccacccg
agttggcggggtctgcgggaggacaagaagccgggcgatgtcacagggcgagaatag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   NITE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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