KEGG T00881: RER

Rhodococcus erythropolis: RER_49760

Entry

RER_49760 CDS T00881

Gene name

ligC

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rer Rhodococcus erythropolis

Pathway

rer03410	Base excision repair
rer03420	Nucleotide excision repair
rer03430	Mismatch repair
rer03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rer03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rer03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rer03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rer03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

NITE:

UniProt:

Position

complement(5428106..5429152)

AA seq 348 aa
MELPLMPPLAPMLAKAAATVPPQPESGDPTWSYEPKWDGFRAIIFRDGDEVVLGSRGGKD
LARYFPEAVEAVKSELPEKCVVDGELVVPREIDGVTRLSWEALSERIHPAASRVALLSEQ
TPAQFVGFDLLALGDRDVSIEDFGVRRALLLDCVGGGPSCHVTAATADSAEAMAWFETFE
GAGLDGVVAKKLAGPYLPNKREMIKVKHARTADVVLLGYRPHKSQPGIGSMLLGLFDGAE
LKMIGGASAFTAARRIELLAELEPLRLGDDVVAEGEASRWRSAADRSWIPLRPERVLEVA
YDQMEGERFRHAARFLRWRPDRVPDECTFDQLEVPVRYDFADVLAGGK

NT seq 1047 nt +upstreamnt +downstreamnt
gtggagctacccctgatgccgccgcttgccccgatgctcgcgaaggctgcggccactgtg
ccgcctcagcccgagtccggtgacccgacgtggtcgtacgagccgaaatgggacggattt
cgagcaatcatctttcgtgacggtgacgaagtggtgctcggatcgcgaggaggaaaggac
ttggcgcggtactttcccgaggcggtggaagccgtcaagtctgaattgcccgaaaaatgt
gtggtggacggagaactggtggttccccgtgagatcgacggtgtgacgcgcctgagttgg
gaagcgctctccgagcggattcaccccgccgcgagccgcgtcgcattgttgtcggaacag
acgcccgcgcaatttgtcgggttcgatttactggcgctcggggatcgcgacgtctcgatc
gaggacttcggtgtgcgacgtgcgttgctcctcgattgcgtcggtggcgggccgagttgc
cacgtcacggcagcgacggcagacagcgccgaagcaatggcctggttcgaaaccttcgaa
ggcgcgggcctcgacggggttgtcgccaagaagctggcgggaccgtacctgccgaacaaa
cgcgagatgatcaaggtgaaacacgccaggaccgcggatgtcgtactgctgggctaccgt
ccacacaagagccagccgggtatcgggtcgatgcttctgggtctgttcgacggtgccgaa
ttgaagatgatcggtggcgcttcggctttcaccgcggcgcggcggatcgagttgttggcc
gaactcgaacctttgcgcctcggggacgacgttgtggccgagggagaggccagccggtgg
agatcggccgcagaccgctcctggattccgcttcgtcctgagcgggtgctggaagtggcg
tacgaccagatggaaggggaacgctttcggcacgccgcgcggttcctgcgctggcgtccg
gacagggtgcccgacgaatgcactttcgatcagttggaggttccggtgcgatacgacttc
gcggatgttcttgcaggtggtaagtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   NITE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

Download RDF

DBGET integrated database retrieval system