KEGG   Rhizobium etli CFN 42: RHE_CH01645
Entry
RHE_CH01645       CDS       T00317                                 
Symbol
rne
Name
(GenBank) ribonuclease E protein
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
ret  Rhizobium etli CFN 42
Pathway
ret03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ret00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RHE_CH01645 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ret03019]
    RHE_CH01645 (rne)
   03009 Ribosome biogenesis [BR:ret03009]
    RHE_CH01645 (rne)
Enzymes [BR:ret01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     RHE_CH01645 (rne)
Messenger RNA biogenesis [BR:ret03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RHE_CH01645 (rne)
Ribosome biogenesis [BR:ret03009]
 Prokaryotic type
  rRNA processing factors
   RHE_CH01645 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 CDC45 zf-CCHC
Other DBs
NCBI-ProteinID: ABC90444
RhizoBase: RHE_CH01645
UniProt: Q2K9P2
Position
complement(1732716..1735601)
AA seq 961 aa
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDVEHVETAPMVDLSTQDQP
DVGIVSAEAPEPVVAADEATTEEIAAAPEIVAPPEVAEEAPAKKAKPRRSRKKVAETTAT
EDAVPTDVEAEGASTVDNDDDTPAGGTMAAMVETDTISEDIDTSKRRHDDDDDDDDHGEE
EVIESVGAEDAMEEVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLS
LAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIARMLEVPQGMGVILRTAGANRTKVEV
KRDFEYLMRLWENVRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREA
KDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVS
IDVNSGRSTREHSIEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEK
KLKECLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGTGHVRSQSSVAL
HVLRGIEEYLLKNTTHNITVRTTPDIALYLLNHKRQTIVDYEARFGVAIIIDADGSVGAQ
HFAIDRGEPVENPVKIESLFNFAAIPEDEDDDIVIEADEDEDEELEEKAAATERPAAARS
EGEGEGNRKRKRRRRRRGRNGNAEQPIAAGETIDEDEDGEDEGSEGDENAAAAPETRAEN
EESQRRKRRRRGKRGGRRNRAEDGSEITAEEAGEDNGDTSEGEGEEITNDVAPSEAETVE
TIAEQAGEGQAAMAAVEGAAVVTEDVKPARGRGRRKPAAPPVEEPVTEAGAAPAVEAEPE
VVEASADLATPAQEEAKPVRANRESNISSSEPTVKSTRTDNGESDEGKPKKAGWWQRRGF
F
NT seq 2886 nt   +upstreamnt  +downstreamnt
atggcagacaaaatgcttatcgatgcgtctcacgaggaagagacgcgcgtcgttgtcgtt
cgcgggaatcgcatagaagaatttgacttcgagtcgcagcacaagaagcagatccgcggc
aacatctatcttgcaaaggtaacgagggtcgagccctcgctccaggccgctttcgtcgat
tacggcggcaaccgacacggcttcctggccttcgccgaaatccatcctgattattaccag
attccgctcgccgaccgtcaggcgctgcttcgggccgaggccgaagagcaccgtcgcgac
gaagacgtcgagcacgtcgaaaccgcgccgatggtcgacctttcgacccaggaccagccg
gatgtcggcatcgtgtcggcggaggcgcctgagccggttgtcgcagccgacgaggcaacc
accgaggagattgctgcagcgccggagatcgtagctccgcccgaggtcgccgaagaagcc
ccggccaagaaggccaaaccacgccgcagtcgcaagaaggtcgccgaaacaaccgcgacg
gaagacgccgttccgacagacgtcgaagcggaaggtgcttcgaccgtcgacaacgacgat
gacacccctgcgggcggcacgatggccgcgatggtggaaaccgacacgatctccgaggac
atcgacaccagcaagcgtcgccacgatgacgacgatgacgatgatgaccacggcgaagag
gaagtcatcgaatccgttggcgccgaagacgcaatggaagaagtgccggaccgcgtgcag
cgcaagccgcgcaagcagtaccgcatccaggaagtcatcaagcgccgccagatcctgctg
gttcaggtcgccaaggaggagcgcggcaacaagggtgccgctctcaccacctacctctcg
cttgcaggccgctattcggttctgatgccgaacacggcgcgcggcggcggcatttcccgc
aagatcaccaatccgcaggaccgcaagcgcctgaaggaaatcgcgcgcatgctcgaagtg
ccgcaaggcatgggcgtcatcctgcgcaccgccggcgccaaccgcaccaaggtcgaggtc
aagcgcgatttcgaatatctgatgcgcctgtgggaaaacgtccgcacgctgacgctggcg
tcgaccgccccctgcctcgtctatgaagagggctcgctgatcaagcgctcgatccgcgac
ctctacaacaaggacatcggcgagatcatagttgccggcgaggaaggctatcgtgaagcg
aaagacttcatgaagatgctgatgccgagccatgccaaggtggttcagccctaccgcgac
atccacccgatcttctcgcgctccggcatcgaagcccagctcgaccgcatgctgcagccg
caggtgacgctgcgttccggcggctacctgatcatgaaccagacggaagcgctggtttcg
atcgacgtcaactccggccgctcgacgcgcgaacactcgatcgaggacaccgcgctgcag
acgaacctcgaggccgcggaagaaatcgcccgccagcttcgcctgcgcgacctcgccggc
ctgatcgtcatcgacttcatcgacatggaagagaagcgcaacaaccgcgccgtcgagaag
aagctgaaggagtgcctgaagaacgaccgcgcccgcatccaggtcggccggatctcgcat
ttcggcctgctcgaaatgtcgcgtcagcgcattcgcgcttcggttctcgaatcgacgacc
caagtgtgctcgcattgcggcggtaccggccacgtccgttcacagtcctctgtcgccctg
catgtgctccgtggcatcgaggaatatctgctcaagaacacgacgcacaacatcaccgtg
cgcaccacgcccgatatcgcgctctacctgctcaaccacaaacgtcagacgatcgtcgat
tacgaagcgcgctttggcgtagcgatcatcatcgatgccgacggttcggtcggcgcgcag
cactttgcgatcgaccgcggcgagcccgtcgaaaacccagtcaagatcgaaagcctcttc
aacttcgcagccatccccgaggatgaggacgatgacatcgttatcgaggctgatgaggac
gaagacgaagaactcgaggaaaaggctgccgcgaccgaacgtcccgctgcggcgcgttcg
gaaggcgaaggtgaaggcaaccgtaagcgcaagcgtcgccgccgccgtcgtggccgcaac
ggcaatgccgagcagccgatagccgcgggcgagaccatcgacgaagacgaggatggagag
gatgaaggcagcgaaggcgatgaaaacgctgcagcagcgcctgagacccgcgctgagaac
gaggaatcgcagcgtcgcaagcgtcgccgccgtggcaagcgcggcggccgccgcaatcgt
gccgaggacggctcggaaataactgccgaggaagccggtgaagacaacggcgacacgagt
gaaggcgaaggcgaagaaatcacaaacgacgtcgctcccagtgaagccgaaaccgtcgag
acgattgccgagcaggctggcgaaggccaggccgccatggccgccgttgaaggtgcagcc
gtcgtcaccgaggatgtgaagccggctcgcggccgcggccgccgcaaacctgccgcaccg
ccggtcgaggagccggtgacagaggcaggggcggcacccgccgtcgaggccgaaccggag
gtggtcgaagcctccgccgatctcgcaacgcccgcccaggaagaagcaaagccggttcgc
gccaaccgcgaatccaatatttcttcctcagagccgacggtgaaatccacccgtaccgac
aatggcgaaagcgacgaaggcaagccgaagaaagccggctggtggcagcgccgtggcttc
ttttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (45)   

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