KEGG T00317: RHE

Rhizobium etli CFN 42: RHE_PE00252

Entry

RHE_PE00252 CDS T00317

Gene name

ligD

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

ret Rhizobium etli CFN 42

Pathway

ret03410	Base excision repair
ret03420	Nucleotide excision repair
ret03430	Mismatch repair
ret03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:ret03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:ret03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:ret03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:ret03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S CTK3_C

Other DBs

NCBI-GI:

NCBI-GeneID:

UNAM_e:

RhizoBase:

UniProt:

Position

p42e:complement(282101..284749)

AA seq 882 aa
MASDKLSSYRSKRDFQKTAEPSGERSLKQSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPE
QALSKGDFKFTLEGERLHGSFVLVRMRNDRERSKRTNWLLIKHHDEFSVDENGASILEEN
VTSVASGRSMEMIAAGKGRKPKPFMVEGGKVQADAVWDSNHGLAAEERQSEASAGKRAGT
ATAVDLPDFIAPQLCEKVERPPGGDGWIHEIKFDGYRIQMRVLDGEVTLKTRKGLDWTAK
YPEIAEAASGLPDCILDGEICALDEQGAPNFAALQAALSEGKTASLVYFAFDLLYDGGED
LRSKPLIERKRRLQELLTEAGNDPRIRYVEHFETGGDAVLRSACKLSLEGIISKQTDAPY
QSGRTESWAKSKCRAGHEVVIGAYAKTNGRFRSLLAGVFRGDHFVYVGRVGTGYGAKKVE
TLLPKLKALETARSPFTGIGAPKKQAEVVWVKPELVAEIEFEGWTADGLVRQAAFKGLRE
DKPAREVEAEPPVRPAKADIAEPVPRARQTPARRKGAKADVMGVLISNPDKPLWPDANGS
EPVTKEELAGYYEAVGDWMIDHIKGRPCSIIRAPDGIGGEQFFQRHAMPGQSNLLDLVKV
FGDKKPYLQIDRIEGLAAVAQIAAVELHPWNCEPGQPEVPGRLVFDLDPGPDVPFATVVA
AAREMRDRLEDLGLISFCKTTGGKGLHVVTPLAVNKRKPLSWPEAKAFAHDVCQQMARNN
PDLYLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPALLSKSSAWKDYCEGQRPLEQAIKKLGRAGKHAA

NT seq 2649 nt +upstreamnt +downstreamnt
atggccagcgacaagctatcaagctatcgatcaaaacgcgattttcagaagaccgctgag
cccagcggcgagcggtccctcaaacagagcaaccgccgtcgctttgtcatccagaagcac
gatgcgacacgcctgcactacgacctgcggctcgagctcgatggcgtgttcaagagctgg
gccgtcaccaaagggccatcgctcgatccgcacgacaagcggctggcggtcgaggtcgag
gatcatcccctcgattatggcgacttcgaaggcactattccgaaaggccagtatggcggt
ggcacggtcatgctgtgggatcgcggctattgggagccggagggcaggaagagcccggag
caggcgctttccaagggtgatttcaagttcacgctcgaaggcgagcgcctgcacgggagc
ttcgtgctggtgcgcatgcgcaacgatcgcgagcgcagcaagcgtaccaattggctgttg
atcaagcatcacgacgagttctccgtggacgagaacggtgcttccatcctcgaagaaaac
gtcacctccgtggcctcaggccgcagcatggaaatgatcgcagccggcaaggggcgcaag
ccgaaacccttcatggtggagggcggcaaggtccaggcggacgccgtctgggacagcaat
cacggactggccgccgaggagcggcagtcggaggcgagcgcgggaaagcgcgccggtact
gcgacggcggttgatcttccggatttcatcgcgccgcaactctgcgagaaggtcgagcga
ccgcctggcggggacggttggatccatgagatcaagttcgatggatatcgcattcagatg
cgcgtgctcgatggcgaagtcaccttgaagaccaggaaaggcctcgactggacggccaag
taccccgaaatcgccgaggcggcgtctgggcttccggattgtatcctcgacggcgagatt
tgcgctctcgacgagcaaggtgcgcctaacttcgcggcactccaggcggcgctatcggag
ggcaagaccgccagcctcgtctacttcgccttcgacctgctctatgacggcggcgaggat
ctccgctcgaagcccctgatcgagcgaaagaggcgattgcaggagctcctcaccgaggcc
ggcaacgatcctcggatccgctacgtcgaacacttcgagaccggcggtgacgccgtcctc
agatcggcatgcaagctctcgctggaaggcatcatctcaaaacagacagatgccccctat
caatccggacgaacggaaagctgggcgaagtcgaaatgccgggcggggcacgaggtggtg
atcggcgcctacgccaaaaccaacggcaggtttcgttcccttctcgccggtgtttttcgc
ggcgatcattttgtctatgtcggccgtgtcggaaccggctacggcgccaagaaagtcgaa
acgttgcttccgaaactgaaggcgctggagacggcgagatcgcccttcacgggtatcggt
gctccgaagaagcaggccgaggtcgtctgggtaaagccggaacttgtcgccgaaatcgaa
ttcgaggggtggaccgcggacggtctcgtccgccaagcagccttcaaaggattgcgcgaa
gataagcctgctcgggaagtcgaggcggagccaccagtaagacccgccaaagcggacatc
gcggagccggttccgagagccaggcaaacaccggcgcgccgcaagggtgcgaaggctgat
gtcatgggagtgctcatctcaaacccggacaaaccattgtggccggatgccaacggcagc
gaaccggtcacgaaggaagaattggcgggctattacgaggcagtcggcgactggatgatc
gaccacatcaagggcaggccctgctctatcatccgcgccccggatggaattggcggcgag
cagttctttcagcgccatgcgatgccgggacaatcgaacctgctcgacctggtcaaggtg
ttcggggacaaaaagccatacctgcagatcgatcgcatcgaaggccttgccgcggtcgcc
cagatcgcagcggtcgaactccatccgtggaactgcgaacccggtcaaccggaagttcct
ggtcgtctggtattcgacctcgatcccgggcctgacgttccctttgccacggtcgttgcc
gctgcccgcgaaatgcgcgatcggctggaagacctcggactgatcagcttttgcaagacg
acgggcggcaagggcctgcatgtcgtgaccccgcttgcggtcaataagcgcaagccgctg
tcatggcccgaggcaaaggctttcgcgcatgacgtctgccagcagatggcccgaaacaac
cccgatctctaccttatcaagatgacgaagagcctgaggggcggtcgcattttcctcgat
tacctgcgcaatgatcgcatggcgacggccgtagcgccgctttctcctcgagcccgcccc
ggtgcgacggtatcaatgcctctgacgtggacgcaggtgaaatcagacctcgaccctaaa
aggttcacgatccgaaccgtacctgccttgctatcgaagtcgtccgcctggaaggattat
tgtgaggggcagcgtcccttggagcaggcgattaagaagctcggccgcgccggcaagcat
gccgcgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
   RHIZOBASE-RET (1)   
   UNAM_E (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

Download RDF

DBGET integrated database retrieval system