KEGG T00268: Reut

Ralstonia eutropha JMP134: Reut_B5079

Entry

Reut_B5079 CDS T00268

Gene name

ligD

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

reu Ralstonia eutropha JMP134

Pathway

reu03410	Base excision repair
reu03420	Nucleotide excision repair
reu03430	Mismatch repair
reu03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:reu03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:reu03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:reu03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:reu03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

2:1817933..1820638

AA seq 901 aa
MAKTTRQTPDDTRGTRSTRTAEPARKRPADALGKYRQMRDFAATPEPGGTRQRARATPKA
KRAGTLSFVIQKHAARRLHYDFRLELDGTLKSWAVPKGPSLDPADKRMAVHVEDHPLDYA
GFEGVIPPGHYGAGTVIVWDRGIWVPDGDADAAYRAGKLKFELRGEKLHGHWTLVRMHGS
RQKEQDAWLLIKERDDAAVPASEFDVTEALPDSVLAGTSAARKTTGRRAATNATKPGNGA
KDSTKDSARTKPLPLPRRATAAALPLALSPQLATLVERAPPDADAWRYEIKFDGYRMLAR
IDGDDVRLFTRQGHDWTSRLKTLAREVRALGLPDGWLDGEIVVLGKHGETDFQALQNAFE
TSHVESIQYFVFDLPFYAGHDLRKAPLSERRALLRRLFENNTGTRLRFSEEFEAAPDEML
DAACRMKLEGVIGKRIDAPYVSTRSNTWIKLKCTQRQEFVIGGFTEPKGSRQGLGSLLLG
VHDSAGRLRYAGNVGTGFDTRSLASLREQLDAQRTDKAPFHELPSSIKGLWVRPRLVAEV
SFGSWTREGRVRHAVFHGLRSDKPASAVSVEKPAAPAGRKTAATTAARSAPATTRKGKPT
AANGKVAISHSERVIDTASGLTKGDLVRYYESAAPLMLPHLRGRPIAMVRAPAGVAGQQF
FQRHGDTLKIDGVNVLDPDLWPGHPALLEIVSEHALVAAAQLNVVEFHTWNANKRSMDRP
NRIIFDLDPGEGVPWPHMREAAALMKAWLDELGLASFLKTSGGKGLHVVVPLTPRAGWDE
VKEFAHGVVLHMAVTIPQRFVAKSGAGNRIGKIFIDYLRNGVGATTAAAFSARARPGLGV
SVPLAWDELDGLEASDQWTVANVAPRLDELARHDPWDTYADTRQTITRAATRLARAGRSK
P

NT seq 2706 nt +upstreamnt +downstreamnt
atggccaagaccacgcgccagacccctgacgacacccgcggcacgcgtagcacccgaact
gcggagcccgcgcgcaagcgcccggccgacgcgctcggcaagtatcgccagatgcgggat
ttcgcagccacgcccgaacccggcggcacgcgccagcgcgccagggcaacgccaaaggca
aagcgcgccggcaccttgtccttcgtcatccagaagcacgctgcgcggcggttgcattat
gacttccggctggaactcgacggcacgctgaaaagctgggccgtgccaaagggtccgagc
ctggaccccgccgacaagcgcatggcggtgcatgtggaagaccatccgctcgactatgcg
ggcttcgagggcgtgatcccgccgggccactacggcgctggcacggtgatcgtgtgggat
cgtgggatctgggtgcccgacggcgatgccgatgcggcctatcgcgccggcaagctcaag
ttcgagttgcgcggcgaaaagctgcatggccactggacgctggtgcgcatgcacggcagc
cggcagaaggagcaggatgcctggctgctgatcaaggagcgcgacgatgcggcggtgccc
gcatccgaattcgacgtgaccgaagcgctgcccgacagcgtgctggccggcacatcggcc
gcgcgcaagaccaccgggcgaagggccgctacgaacgctacgaagcccggcaacggcgcc
aaggacagcaccaaggacagcgccagaaccaagcccttgccgctcccacgtcgcgccact
gccgcagcactgccgctcgcgctgtcgccgcaactggccacgctggtcgagcgagcgccc
cccgatgccgatgcatggcgctacgagatcaagttcgacggctaccgcatgctggcccgt
atcgacggcgacgacgtgcgcttgtttacgcgccagggccacgactggacatcgcgcctc
aagacgctcgcgcgcgaagtgcgcgcgctcggattgcccgatggctggctcgatggggaa
atcgtcgtgctcggcaagcacggcgagaccgatttccaggccttgcagaatgccttcgag
acgtcgcacgtggaatcgatccagtacttcgtcttcgacctgccgttctatgccggccac
gacctgcgcaaggcgccgctgtccgaacggcgcgcgctgctgcggcgcctgttcgagaac
aacaccggcacacgcctgcgcttcagcgaggaattcgaagccgcccccgacgaaatgctc
gacgctgcctgtcgcatgaagctcgaaggcgtgatcggcaagcgcatcgacgcgccgtat
gtcagcacgcgcagcaacacgtggatcaagctcaaatgcacgcagcgccaggagttcgtg
atcggcggctttaccgagcccaagggcagccgccagggtctcggctccctgctgctcggc
gtgcacgacagcgccgggcgcctgcgttatgcgggcaatgtgggaacggggttcgatacg
cgctcgctggccagcctgcgcgaacagctggatgcgcagcgcacggacaaggcgcccttc
catgagctgccctcctcgatcaaggggctgtgggttcggccgcggctcgtggccgaggtg
tcgttcggatcgtggacgcgcgaaggccgcgtgcgccatgccgtgttccatggcttgcgc
agcgataaacccgccagcgcggtgtccgtggaaaagcccgccgcacccgccggccgcaag
acggcggccacaaccgcagccaggagcgcgccagccaccacacgcaagggcaaacccacg
gcggcgaacggcaaggtcgccatcagtcactcggagcgcgtcatcgataccgccagcggg
ctgaccaagggagacctggtgcgctactacgaaagcgcggcgccactgatgctgccgcat
ctgcgcggccgccccatcgccatggtgcgggcgccggccggcgtcgccggccagcagttt
ttccagcggcatggcgacacgctaaagatcgacggcgtcaacgtgctcgatccggacctg
tggccgggtcatccggcgctgctcgagatcgtctcggagcacgcactggtggccgcggcg
cagcttaatgtggtggagttccatacctggaatgccaacaagcgcagcatggaccggccc
aaccgcatcatcttcgatctcgaccccggggagggcgtgccgtggccgcacatgcgcgaa
gccgcggcgctgatgaaggcgtggcttgacgaactcgggctcgccagtttcctgaagacc
agcggcggcaagggcctgcacgtggtggtgccgctgacaccgcgcgcgggctgggatgag
gtcaaggagtttgcccacggtgtggtgctgcacatggccgtgacgattccgcagcgcttc
gtggccaagagcggcgcgggcaaccgcattggcaagattttcatcgattacctgcgcaat
ggcgttggcgccacgacggccgcggcattctccgcgcgggcgcgccccggcctgggcgtg
tcggttccgcttgcgtgggacgagctcgacgggctcgaggcctccgaccagtggaccgtc
gccaatgtggcgcctcgcctggacgagctggcacgccacgacccctgggacacttatgcg
gacacccgccagaccatcacgcgcgctgccaccaggctggctcgcgccggaaggagcaag
ccatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-REU (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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