KEGG T02806: O5Y

Rhodococcus erythropolis CCM2595: O5Y_20150

Entry

O5Y_20150         CDS       T02806

Name

(GenBank) transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

rey Rhodococcus erythropolis CCM2595

Pathway

rey03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:rey00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    O5Y_20150
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rey03400]
    O5Y_20150
Enzymes [BR:rey01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     O5Y_20150
DNA repair and recombination proteins [BR:rey03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      O5Y_20150

SSDB

Motif

Pfam:

DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII IstB_IS21 DUF3638 AAA_22 RecG_dom3_C

Other DBs

NCBI-ProteinID:

AGT93856

Position

complement(4451838..4455464)

AA seq 1208 aa
MTSLSSAQTALAGLAEVALADAAFTPVIDSIGAPALDIVAPKPARPFIAAALAARTPVLL
VTATGREADDLTSELTEMLGGGVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDA
SYGSPLRVIVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFDSVLVRLVEMAYSRVDMVGK
RGEFAVRGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLPDVDVDSVIAPPCRE
LILTADVRDRAAALAAENQADASLVEMLDKISAGIPVEGMEALLPVLKPGELQLLSDVLP
VGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSILNGGGVDLGASAY
RSLRHVRESAEAAGRPWWTVSPLASGNGEELEIPVQAAPQVRGSDDLLAELFVSLRAHVS
TGGRAAIVVAGAGTASRVVERLGEAEVPAKMLEGGATPARGQVAVLRGSLHDGLVLAGDD
STPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALSAGDMVVHDQHGIGRFVEMV
ERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWANT
KRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETIDQLTVISEVK
ADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTERM
ASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLGLVIVDEEQR
FGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYVGAY
ADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQMNEDTLENT
VQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGYAY
FLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFD
LYVRLVGEAVEAFRAAADGKPITMDEGTKEVRIDLPVDAHIPPDYVTSDRLRLEGYRKLA
AATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLCREYQLEEVAVTGTQLKISPMS
LPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTGGVGSDRLRDVELLQYIADFILAIDGRA
AGAVLVEA

NT seq 3627 nt +upstreamnt +downstreamnt
ttgacttccttgtcctctgcccagactgcgctcgctggactcgccgaggtcgccctcgca
gacgccgcgttcactccagtgatcgactcgatcggtgcgcctgccctggacatcgtggcg
ccgaagccggctcgaccattcatcgccgctgcacttgccgcgcgcactccggtgctgctg
gtgacggccaccggtcgcgaagccgacgatctgacgtcagaactcaccgagatgctcggt
ggaggcgtcgcgcagttcccgtcgtgggaaacattgccgcacgagcgactgtcgccgagc
gcggacaccgtcgggcgacgggtggaggtactgcgccgactcgccagaccagacgacgcc
tcgtacggctcgcctcttcgggtgatcgtgaccacggtgcgctctctcgttcagccgatg
gcgccgggtcttggcgagatcgagccgatcacgttgcgcgtcggcaccgagatcgatttc
gattctgttctggttcgtctggtggagatggcgtacagccgtgtcgacatggtgggaaag
cgtggtgagttcgcggtccgcggcggcattctcgacctgttctcgccgacggcggatcat
ccggtacgtatcgaattctggggtgacgaggtatcggagcttcggtacttctctgtcgcc
gatcagcgttcgctaccggacgtcgacgtcgattccgtgatcgcgccgccgtgtcgtgag
ctgattctgacagctgatgttcgcgatcgagctgcggcactcgctgctgagaatcaggct
gacgcttcgttggtcgagatgctggacaagatctcggcaggcatccccgtcgaggggatg
gaagctctgctcccggttctcaaacccggtgaactgcaactactttccgatgtccttccg
gtaggggcgcacatccttctgtgcgatccggagaaggtgcgcacccgcgccaccgatctg
gtgcgcaccggccaggaattcttggaagcgtcgtggacggcggcgtcgatcggcggcgct
gcaccgctcgacacgtcgatcctcaacggcgggggagtcgatctcggtgcctccgcatac
cggtcgcttcgtcatgttcgcgaatctgccgaagctgccggccgtccgtggtggacggtc
agcccgctggcgtcgggaaatggtgaagaacttgaaatcccggttcaggcggcaccgcag
gtacgtggttccgacgacctgttggccgagctgttcgtcagcctccgggcacacgtgagc
acgggcggtcgcgcggcgatcgtggtggcaggcgccggcacagcaagccgagtcgtcgag
cgactcggtgaagccgaagtgcccgcaaagatgctcgaaggcggagcgacccctgcccgc
ggacaggtcgcggtgctccgcgggtctctgcacgacggactggtactcgccggcgacgac
tcgacgccggggatggtgatcgtcaccgagtccgatctgacgggcaaccgcgttgcagcg
gtcggcgacggaaagcgcttgccggccaagcgccgcaatcaggtcgatcccctcgcgctg
tctgcaggggacatggtcgtgcacgatcagcacggtatcggccggttcgtcgagatggtc
gaacgcaccatcggcggggcgcgtcgtgaatacttggtcatcgagtatgcgccgagcaag
cgtggtcacccgggtgatcgtctgttcgtcccgatggaatcgctcgatcaactctcccgg
tacgtcggtggagagttgcctgcgctgagcaagctcggcggatccgactgggcgaacacc
aagcgtaaggcccgcaaggcggttcgtgagatcgcgggtgagttggttcagctctacgct
gcgcgtcaggcggccccggggcatgcgttcggcccggacacgccgtggcagaaggaactc
gaagacgcgttcgccttcaccgagaccatcgaccagttgaccgtcatcagtgaggtcaag
gccgacatggagaagccggttccgatggaccgggtggtgatcggtgacgtcgggtacggc
aagacggagatcgccgttcgtgccgcgttcaaggcagtccaggacggcaagcaggtggcg
gtactggtcccgacgactctgcttgcacagcaacatcttcagacattcaccgaacgaatg
gcgtcgttcccggtgaaggtgcgagggctgtcccgtttcaccgacgccaaagactcgaag
gaaatcatcgccggcatggccgaaggcgagatcgacatcgtcgtcggtactcaccggttg
ctgcagaccggtattcgctggaaggacctcgggcttgtgatcgtcgacgaggaacagcga
ttcggagtcgagcacaaggaacatatcaaggcactacgcacccacgtcgacgtcctgacg
atgtcggctaccccgattcctcgtactctcgagatgagcatggccgggatccgtgagatg
tccacgatcctcacaccgccggaagaacgtcatccgatcctcacttacgtcggcgcgtat
gcggacaagcaggttgccgcggccatccggcgtgaacttctgcgcgacggtcaggtcttc
tacgtacacaaccgtgtcagctcgatcgacaaggcagccaagaagatccgtgaactcgtc
ccggaggctcgcgtcgtcgtcgcgcacggtcagatgaacgaggacactctcgaaaacacc
gtgcagggcttctgggaacgcgacttcgacgtgttggtctgtaccacgatcatcgaaacc
ggtctggacatctcgaacgcgaacacactgatcgtcgaacgtgcggactcgcttggcctc
tcgcagttgcatcagcttcgcggacgcgtcgggcgtagtcgtgaacgtggatacgcatac
ttcctgtacccggccgaaaagccgttgacggaaacggcatacgaccgactggcaacgatt
tcgcagaattcggacctcggcgctggtatggcagtcgcgatgaaggacctcgaaatccgt
ggagccggaaacgttctgggcgcagagcagtccggccacgtcgcgggggtcgggttcgat
ctgtatgtcaggctggtcggtgaggcggtcgaagccttccgggctgcagccgacggcaaa
ccgatcaccatggacgagggcacgaaggaagtccggatcgacctaccggtggacgcgcac
atcccgcccgactacgtcaccagtgacaggctcaggttggaggggtaccgcaagctcgct
gcggcaactgattccgacggcatcgctgccgtagtcgaagaactggtcgatcgctacggc
ccactgcccgaagaggttcgacggctgatctcggtggccaagcttcgactgctctgccgc
gagtaccaactggaggaagtcgccgtcaccggaactcagctcaagatctcgccgatgtca
ctgcccgattccaaacagatcaggctcaagaggatctatccgagcgcgcagtaccgggca
acgaccgggctcgtgcaactcccgctgcctcgcaccggcggagtcggctcggatcgcctg
cgggacgtcgaactacttcaatacatcgcggacttcatcctggcgatagacgggcgcgcc
gccggtgccgtcctggtcgaggcgtga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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