KEGG   Rhodoferax ferrireducens: Rfer_1656Help
Entry
Rfer_1656         CDS       T00334                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
rfr  Rhodoferax ferrireducens
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:rfr00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Rfer_1656
Enzymes [BR:rfr01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Rfer_1656
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Rfer_1656
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
complement(1787588..1788403)
Genome map
AA seq 271 aa AA seqDB search
MPELPEVEVTRLSFAFEIAGARVISVRIGKPLRWPLGCSPTQLAGRSVQAVRRRGKYLLI
DLDQGLLLVHLGMSGSLSFARQLPPAGAHDHFEMTTTLGTLRLTDPRRFGAVVYAKGEDA
PEAHKLLGKLGMEPLSDDFDVDRFHDELKRRRAAIKQVLLAGDTVVGVGNIYASEALFMA
GIRPTLSAARLSRPRSARLHAAIRDVLARAVATGGSTLRDFSSAKGENGHFQLEAMVYAR
QGQPCRVCATPIKSLRQGQRSTFYCPHCQKA
NT seq 816 nt NT seq  +upstreamnt  +downstreamnt
atgcccgaattgcctgaggttgaagtcacacggttgagttttgccttcgaaatagcaggc
gcaagagtcatttctgtgcgcatcggtaaaccgttgcgctggccgttgggatgttctccc
acccagttggcggggcgatccgtgcaggcagtgcgcagacgtggcaagtacttgttgatt
gatcttgatcaaggcttgctgctggttcacttgggcatgtccggcagcttgagttttgcc
aggcaattgccacccgctggcgcccatgaccattttgagatgacaaccacccttggcacg
ctgcgactcactgacccccgccggtttggggcggtggtttacgcaaaaggtgaagacgca
cccgaagcccacaaacttttgggcaaactgggcatggagcctttgtctgatgattttgat
gtcgaccgctttcatgatgaattgaagcgccgcagagcggcgatcaagcaggtattgctg
gcgggtgacacggtggtgggcgtgggcaatatttacgcgtcagaagcactgtttatggcc
ggcattcgaccaaccttgagcgctgcccgactcagtcggccgcgcagcgccagactgcac
gcagcgatccgggatgtgctggcgcgcgcggtggcaacgggcggcagcacgctgcgggac
ttttccagcgcaaaaggcgagaacgggcattttcagctggaagccatggtttatgcccgg
caaggtcagccctgccgggtctgcgcaacgcccatcaaatccctccgacaaggtcagcgg
tcgacgttctactgccctcattgccagaaagcctag

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