KEGG T00334: Rfer

Rhodoferax ferrireducens: Rfer_2321

Entry

Rfer_2321 CDS T00334

Gene name

sucA

Definition

2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2)

Orthology

K00164

2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]

Organism

rfr Rhodoferax ferrireducens

Pathway

rfr00020	Citrate cycle (TCA cycle)
rfr00310	Lysine degradation
rfr00380	Tryptophan metabolism
rfr01100	Metabolic pathways
rfr01110	Biosynthesis of secondary metabolites
rfr01120	Microbial metabolism in diverse environments

Module

rfr_M00009	Citrate cycle (TCA cycle, Krebs cycle)
rfr_M00011	Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate

Class

Metabolism; Carbohydrate metabolism; Citrate cycle (TCA cycle) [PATH:rfr00020]
Metabolism; Amino acid metabolism; Lysine degradation [PATH:rfr00310]
Metabolism; Amino acid metabolism; Tryptophan metabolism [PATH:rfr00380]

SSDB

Motif

Pfam:

Transket_pyr E1_dh

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(2546160..2549051)

AA seq 963 aa
MSETTSQGASSTSSVYQAYQANTYLFGGNAPYVEEMYENYLANPGGVPDSWRDYFDALQH
VPAADGSNAKDVPHLPVINAFAERAKQGGTKVVVANVDAEMGRKRTAAQQLIAAYRNVGV
SWADLDPLKRAERVVIPELEPSFYGFSDADQEAVFDTSNTFFGKNSMSLRELMNALRQTY
CGTIGAQFMHTTDQNHKRWWQQKLESIRSKPSFSVEQQKHILDRLTAAEGLERFLHTKYV
GQKRFSLEGGESFIACMDELIQSAGVKGIQEIVIGMAHRGRLNVLVNSLGKMPGDLFAEF
DHTAPEELTSGDVKYHQGFSSDVTTRGGPVHLSLAFNPSHLEIVNPVVEGSVRARMDRRA
DPLGKQVLPVLVHGDAAFSGQGVNMETFALAETRGYSTGGTVHIIINNQIGFTTSDPRDS
RSTLYCTDVIKMIEAPVVHVNGDDPEAVVLATQLALEFRLEFRKDVVVDIVCFRKLGHNE
QDTPALTQPLMYKKIAAHPGTRSLYADKLAAQGLGATLGDDMVKAFRAAMDAGKHTVDPV
LTNFKSKYAVDWAPFIGQKWTDAAETAIPLGEWKRLAEKITTIPASVTPHNLVRKVYEDR
AAMGRGDLPVDWGMGEHMAFASLVASGYPVRLSGEDCGRGTFTHRHSVIHDQNREKWDVG
TYIPLQNVTDNQAPFVVIDSILSEEAVLAFEYGYASNEPNTLVIWEAQFGDFANGAQVVI
DQFIASGEVKWGRVNGITLMLPHGYEGQGPEHSSARLERFMQLSADTNMQVVQPTTASQI
FHILRRQMVRNIRKPLIILTPKSLLRAKDAASPVSEFTKGSFQTIIPEQKALKADKVKRL
VACSGKVYYDLVKKREEIAADDVAIIRVEQLYPFPHKAFAAELKRYPNVTEVVWCQDEPQ
NQGAWFFVQHYIYENMFDGQKRGYSGRAASASPAVGYAHLHQEQQKALVEGAFAKLKGTV
LTK

NT seq 2892 nt +upstreamnt +downstreamnt
atgagtgaaacaacgtctcaaggggcgagttcgacatcgtcggtctatcaggcctatcag
gccaatacctatctttttggtggcaacgcgccgtacgtcgaagagatgtacgaaaactac
ctggccaatcccggtggtgtgccagacagttggcgtgactacttcgatgccttgcagcat
gtgcccgccgcagatggcagcaacgccaaagacgtgccccacctccccgtcatcaatgca
tttgccgagcgtgccaaacagggcggcaccaaggtcgtggtggccaatgttgatgccgaa
atggggcgcaagcgcaccgccgcgcagcagttgattgcagcctaccgcaacgttggcgtc
agttgggcggatctggaccctttgaagcgcgccgagcgggtggtgattcctgaattggag
ccctcgttttacggtttcagcgatgccgaccaggaagcggtgtttgacaccagcaacacc
ttctttggtaaaaacagcatgagcctgcgcgagttgatgaacgcgttgcggcagacttat
tgcggcaccatcggtgcgcagttcatgcacaccacggatcagaaccacaaacgctggtgg
caacaaaaattggagagtattcgttccaaaccgagcttctcggtggagcaacaaaaacac
attctggatcggctgaccgccgccgaaggcttggagcggtttttgcacaccaagtatgtg
gggcaaaagcgcttttccctggaaggtggcgagagttttatcgcctgcatggatgagctg
attcaatcggctggcgtcaagggcatccaggaaatcgtgattggcatggcgcaccggggg
cgtctgaacgtgctggtgaattcgctgggcaagatgcctggtgatctgtttgccgagttc
gaccataccgcacccgaagaattgaccagcggggacgtgaaataccaccagggtttcagt
tctgacgtcaccacccgcggtggcccggtgcatttaagtctggcgttcaacccctcgcat
ctggagatcgtcaacccggtggttgagggttcagtgcgcgcccgcatggatcgccgcgct
gacccgctcggcaagcaagtgctgccggtgctggtgcatggcgacgcggccttttcgggc
cagggtgtcaacatggaaacctttgcgctggctgaaacccggggttactccacgggtggc
acggtgcatatcatcatcaacaaccagatcggtttcaccaccagcgatccacgcgacagc
cgctccacactgtattgcaccgatgtgatcaagatgatcgaggcgccggtggtgcatgtg
aacggcgatgacccggaagccgtggtgctggccactcagttggcgctcgagttccgtctg
gagtttcgcaaggacgtggtggtcgacatcgtttgtttccgcaagctcggccacaatgag
caggacacaccggcgctgacgcagccgctgatgtacaagaaaattgcagctcaccccgga
acgcgcagcctgtacgccgacaaactggcagcgcagggtttgggggccacgctcggcgat
gacatggtcaaggccttccgcgccgccatggatgcgggcaaacacacggtagacccggta
ctgaccaacttcaagagtaagtacgctgtggactgggcgccctttattggccagaagtgg
accgatgccgccgagaccgcgatccccctgggtgagtggaagcgtctggctgaaaaaatc
accaccattccggccagcgtgacgccgcacaacctggttagaaaggtctatgaagatcgc
gccgccatgggcaggggcgacctgccggtggactggggcatgggcgagcacatggccttt
gcctcgctggtggccagcggctacccggtgcgcctgagcggcgaagactgcggtcgcggc
acctttacccaccggcattcggtgattcacgaccaaaaccgtgaaaagtgggatgtgggc
acctatatcccgctgcaaaacgtgaccgacaaccaggctccgtttgtcgtcatcgactcg
atcctgtcagaagaggccgtgctggcctttgagtatggctacgcgtcgaacgaacccaac
acgctggtgatctgggaagcccagtttggcgattttgccaatggggcgcaagttgttatc
gaccagttcatcgcctccggcgaggtgaagtggggccgcgtcaacggcatcaccctgatg
ctgccgcacggctacgaaggccagggccccgagcacagctcggcccgactggagcgcttc
atgcagctcagtgccgacaccaatatgcaggtcgtgcagccgaccacggcgagccagatt
ttccacattttgcggcgacagatggtgcgcaacattcgcaagcccttgatcatcctgacg
cccaagtcgctgctgcgcgccaaggatgcagcgtctcccgtgtccgaatttaccaagggc
agcttccagaccatcattccggaacaaaaagcgctgaaggccgacaaggtcaagcgcctg
gtggcttgttccggcaaggtctattacgacctggtcaaaaagcgcgaagaaatcgctgcc
gacgacgtggcgattattcgggtcgagcagttgtatccgtttccacacaaggcgtttgcc
gctgaactcaaaagatatccgaatgtgacggaggtcgtatggtgtcaggatgagccgcaa
aaccagggcgcctggttttttgtgcagcattacatctacgaaaacatgtttgacgggcaa
aaacggggctattcgggccgcgcggcgtccgcatcgcccgccgtgggttatgcgcacctg
caccaggagcagcaaaaagcgctggttgaaggcgcattcgccaagctcaaaggcactgtc
ctcaccaaataa

All links

Pathway (8)   
   KEGG PATHWAY (6)   
   KEGG MODULE (2)   
Chemical substance (13)   
   KEGG COMPOUND (13)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RFR (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (36)   

Download RDF

DBGET integrated database retrieval system