KEGG T00334: Rfer

Rhodoferax ferrireducens: Rfer_3423

Entry

Rfer_3423 CDS T00334

Definition

D-alanine--D-alanine ligase (EC:6.3.2.4)

Orthology

K01921

D-alanine-D-alanine ligase [EC:6.3.2.4]

Organism

rfr Rhodoferax ferrireducens

Pathway

rfr00473	D-Alanine metabolism
rfr00550	Peptidoglycan biosynthesis
rfr01100	Metabolic pathways

Class

Metabolism; Metabolism of other amino acids; D-Alanine metabolism [PATH:rfr00473]
Metabolism; Glycan biosynthesis and metabolism; Peptidoglycan biosynthesis [PATH:rfr00550]

SSDB

Motif

Pfam:

Dala_Dala_lig_C Dala_Dala_lig_N ATP-grasp_4 ATP-grasp_3 ATPgrasp_Ter ATP-grasp GARS_A TTL CPSase_L_D2

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(3807928..3808968)

AA seq 346 aa
MSQIGINDGASQQPAGTTLGGVAARLGKVAVLMGGASAEREVSLMSGQGVLQALISQGVD
AHAFDPAERDLAELKVEGFSHCFIALHGRFGEDGTVQGALELLGIPYTGSGVMASSIAID
KVMTKRIWRSEGLPTPEWRQVDSAAATSEAFAALGSPMIVKPDREGSTIGLTKVTQIEQC
GAAYALAARHDAMVLCEQFVKGDEVTIPLLGSGAGAHALPVIRIVAPDGNYDYQNKYFTD
TTQYLVPANLPAGEEAHIQQLALKAYQVLGCRGWARVDVMIDARTRAPFLLEINTSPGMT
PHSLVPMAAKAAGVSYPALCLEVLRHATLDYAAAGGDAQQPSTEPA

NT seq 1041 nt +upstreamnt +downstreamnt
atgagtcaaattggcataaatgacggcgcgagccagcagcccgccgggacgaccctgggc
ggcgtggcggcacgcctgggcaaggtggcggtgctgatgggcggcgcctcggcagagcgt
gaggtgtcgctgatgtccgggcagggcgtgctgcaggcgctgatttcgcaaggggttgat
gcccatgcgtttgacccagccgagcgcgatctggccgagctcaaggttgagggtttttca
cattgttttattgccttgcacggccgctttggtgaagacggcacggtgcagggtgcgctt
gaactgctcggcatcccgtacacgggctccggcgtcatggcctccagcattgccatcgac
aaggtcatgaccaagcgcatctggcgcagcgagggactgccgacgcccgagtggcggcag
gtggacagtgcagcggccacgagcgaagccttcgccgcgctgggcagcccgatgattgtg
aagcccgaccgggaaggctccaccatcggcctgaccaaagtcacgcaaatagagcagtgc
ggtgcagcctatgccctggccgcccggcatgacgccatggtgctgtgtgagcagtttgtc
aaaggtgatgaagtgacgattcccctgctcgggtcgggcgctggcgcccacgcgctgccg
gtgatccgcatcgtggcgccggacggcaactacgactaccagaacaagtacttcaccgac
accacgcaatacctggtgcccgccaacctgccggcaggcgaagaagcccacattcaacaa
ctggcgctcaaggcctaccaggtgctgggatgccggggctgggcccgcgttgacgtgatg
atcgacgcccgcacacgcgcgccctttttgctggaaatcaacacctcgcccggcatgacg
ccgcactcactggtgcccatggcggccaaggccgccggtgtcagctacccggcgctgtgc
ctggaggtgttgcgccatgccacgctggactatgccgccgccggtggcgatgcccagcaa
ccctccacggagcctgcatga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RFR (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (27)   

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