KEGG T00334: Rfer

Rhodoferax ferrireducens: Rfer_4361

Entry

Rfer_4361 CDS T00334

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rfr Rhodoferax ferrireducens

Pathway

rfr03410	Base excision repair
rfr03420	Nucleotide excision repair
rfr03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rfr03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rfr03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rfr03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

plasmid1:complement(125746..126975)

AA seq 409 aa
MPGIWPGHHQQQERYPPASAGCGALFPFEKNMTEELAKNTSLYSRHNGADKVYHAYLRKK
DDGWTVDYAHGGRGKALKVGTRTETPVAYVKALKIFESLVNSKKNGDSHYQEGEAGTAYE
NITDSKELFGIFPQEPTAIQRAALKALIFDNDWCFQVKANGENRLLSIKGDCARGGNKKG
QVVSIPTHWLTEFKALGNFVANGEHVGDRFIAFDLLEYEGIDMRGWPQRRRFAKLLEMYD
SMNDVANVTPSFGVIECYYTADEKQALLQRAEDIRLEGIVAKNARGVYAQGRGPDSLKFV
FREVSTCIVMARNVQRSVQVGLLNSEGDLVSRGNVTIPPNKPVPEVDALVDVQYMYDNGK
SFVISVYDPDNKSPRSDVERHECTLSQVTRTMPDEEYVDPEAYHRRQCA

NT seq 1230 nt +upstreamnt +downstreamnt
atgcccggcatttggccgggccatcatcaacaacaagagcgctatccaccagcttctgct
gggtgcggagcgctctttcctttcgagaaaaacatgactgaagaactagccaaaaacaca
tccctttattccaggcacaacggtgccgacaaggtctaccatgcctaccttcgcaagaaa
gacgacggctggacagttgattacgcgcacggtggccggggcaaggccctcaaagtcgga
acgagaactgaaacgccggttgcctatgtcaaagccctcaaaatctttgagtcactggtc
aacagcaaaaagaacggcgacagccactatcaggaaggggaggccggcaccgcctacgag
aacatcaccgatagcaaggaactgtttggcatctttccgcaagagccgaccgcgatccag
cgcgcggcactgaaagcgctcatttttgacaatgactggtgcttccaggtcaaggccaat
ggcgaaaaccgtttgctgtccatcaagggtgactgcgcacgcggcggcaacaagaagggg
caggttgtttccattcccacccactggctcaccgagttcaaggccttgggcaatttcgtt
gccaacggcgagcacgtgggcgatcgcttcatcgctttcgatttgctcgaatacgaaggc
attgacatgcggggctggccacaacgtcgacgcttcgccaagctgctcgaaatgtatgac
agcatgaacgatgtggccaatgtgactccgagtttcggagtcatcgagtgctactacacc
gccgatgaaaagcaggcgctgttgcagcgggccgaagatatccgactcgaaggcatcgtg
gccaaaaacgctcgcggcgtctacgcacaaggtcgaggccctgacagcttgaaattcgtg
tttcgtgaagtgtcgacttgtatcgtcatggccagaaatgtccagcgctcggtgcaagtg
ggcttgctcaacagtgaaggtgatctggtgagccgaggcaatgtcaccattcctccgaac
aagccagtacctgaagtcgatgccctagtcgacgtccagtatatgtatgacaatggcaaa
tcctttgtcatctctgtttacgatcccgacaataagagcccacggagcgacgtagaacgg
cacgaatgcacgctgtcgcaagtcacgcgcacgatgccagacgaagaatatgtcgacccg
gaggcctatcaccgacgccagtgcgcctga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RFR (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

Download RDF

DBGET integrated database retrieval system