KEGG   Rhizobium gallicum bv. gallicum: RGR602_CH01889
Entry
RGR602_CH01889    CDS       T03539                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
rga  Rhizobium gallicum bv. gallicum
Pathway
rga03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RGR602_CH01889 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rga03400]
    RGR602_CH01889 (mfd)
Enzymes [BR:rga01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RGR602_CH01889 (mfd)
DNA repair and recombination proteins [BR:rga03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      RGR602_CH01889 (mfd)
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID MFD_D3 UB2H RecG_dom3_C AAA_22
Other DBs
NCBI-ProteinID: AJD41220
UniProt: A0A0B4X3A7
Position
1868773..1872276
AA seq 1167 aa
MIPGIDASKLAAAAEPLTIGNVPSGLEPLLLAELARAGGPVAYVLSDGQRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLTALSGLIAHRKKPHAAIVLVTVNAMLQK
VAPQDVIESLAFSARPGNQVRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLNLNPMSEVTLTPDTISRFRKNYLSAFG
AATRDDALYLAVSEGRRYPGMEHWLPLFYEKLETVFDYLKGFRMVTDHTVREAAEERSKL
VLDYFDARLNSAQQVKGQMAQGTPYKPVTPGQLYLDSEIFSKTLDAFNSMRISPFNEHEG
EARRVVNIGARQGERWARANAEGGNAERVNIFDVVVKHIAERRAGGAKVLITAWTEGSLE
RLLQVLNEHGLERVKPVEALKAVDSLDRGEAAAAVLSLESGFEIGNLIVIGEQDILGDRM
VRRTKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFVGLKAIEAAGAPHACLELQYADDA
KLFLPVENIDLLSRYGGEGTEAQLDRLGGGAWQMRKAKLKKRLLDMADALIRIAAERLTR
HAPALTTQEGLYDEFAARFPYDETEDQDNAIEAVRGDLAAGRPMDRLVCGDVGFGKTEVA
LRAAFIAAMNGIQVAVVVPTTLLARQHFKTFIERFRGLPVRIQQASRLVGAKELALTKKE
VAEGKTDIVVGTHALLGAGIKFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATP
IPRTLQLAMTGVRELSLITTPPIDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCPR
LADLEDVHAFLRSDVPELKVAVAHGQMPAGELEDVMNAFYEGRYDVLLSTTIVESGLDVP
TANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAERRLKVLQSLDT
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIQDTGWS
PQISVGTPVMIPDGYVPDLHLRMALYRRLGEITELKEIDAFGAEMIDRFGPMPIEVQHLL
KIVYIKSLCRIANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIAKQGTMAKIRPDHSVFL
TRDLPTPEKRLQGAAVVMTQLAEMAKP
NT seq 3504 nt   +upstreamnt  +downstreamnt
atgatcccaggaattgatgcaagcaagctcgcagccgccgccgagccgctgacgattggc
aatgtgccgtccggcctggaaccgctcctgctcgccgaattggcacgcgctggcggaccg
gtcgcctacgtgctttccgacgggcagcgcatggccgacctggagcaaatgctcggcttt
gtcgcgcccgacattccggttcttacgctgcccgcctgggactgcctgccctacgaccgc
gtttctcccagcgccgatacctcggcccgccgcctgacggcactgagcggtctgatcgcc
catcgcaagaagccacatgcggcaatcgtgctcgttaccgtcaacgcaatgctgcagaag
gtggcgccgcaagatgtgatcgagagtctggcattctcggcgcgccccggcaaccaggtc
cgcatggacgacctcgccggccgtctggagcgcaacggcttcgatcgggtcgcgacggtg
cgcgaggtcggcgaatatgcggtgcgcggcggcatcctcgacgttttcgttccgggctcc
gaagagccggtccgtctcgatttctttggagatacgctggagagtatccgcagcttcgac
ccggcaagccaacgcacaaccgggcaggtgcgttctcttaatctcaacccgatgagcgaa
gtgacgctgacgccggatacaatcagccgcttccgcaagaattatctctcggcctttggc
gccgcgacccgcgacgacgcgctttatcttgcggtttccgaagggcgccgctatcccggc
atggagcactggctgccgctcttctacgagaagctggagactgtcttcgattacctgaag
ggttttcggatggtcacggaccataccgtgcgtgaggccgccgaggagcgctcgaagctg
gttctcgattacttcgatgcccgcctgaactcagcccagcaggtcaagggccagatggcg
cagggaacaccctataagcctgtgacgcccggtcaactttatctcgacagcgaaatcttt
tcgaagactctggatgcgttcaatagcatgcggatttcgcccttcaacgagcacgagggc
gaggcaaggcgcgtcgtcaacatcggtgcgcgccagggcgagcgctgggcgcgggcgaat
gccgaaggcggcaatgccgagcgcgtcaacatcttcgatgttgtcgtcaagcatatcgcc
gaaaggcgggcaggcggcgcgaaagttctcatcaccgcctggacggaaggttcgcttgaa
cgcctgttgcaggtgctgaacgagcatggcctggaacgcgtcaagccggtcgaagcgttg
aaggccgtcgattcgctggacaggggcgaggcagcggcagccgtgctcagcctcgagtcg
ggcttcgagatagggaatctcatcgtcatcggcgagcaggacattctcggcgaccgcatg
gttcgccgcaccaagcgccgcaagcgcgctgccgacttcatttcggaggttgcgggtctc
gacgaaggttcgatcgtcgtccacgccgaacatggcatcggccgtttcgtcggcctgaag
gcaatcgaggcggccggcgccccgcacgcctgtctagagctgcaatatgccgatgacgcc
aagctcttcctgccggtcgaaaacatcgatctcctgtcacgttatggcggtgagggaacc
gaagcccagctggacagactcggcggcggcgcatggcaaatgcgcaaggcgaaactcaag
aaacgcctgctcgacatggcggacgcgctgatccgaattgcggccgagcgtttgacccgc
cacgcgccggcgctgacgacacaggaagggctttacgacgagtttgcggcccgcttcccc
tacgatgagacagaagatcaggataatgccatcgaggccgtgcgcggcgaccttgccgct
gggcgcccgatggatcgcctcgtctgtggcgacgtcgggttcggcaagacggaagttgcg
ctgcgcgccgccttcatcgcggcgatgaacggtattcaggtcgctgtggtcgtaccgaca
acgctgcttgcgcggcagcatttcaaaaccttcatcgagcgcttccgtgggctgccggtg
cgtatccagcaggcctcgcgccttgtcggtgcgaaggaactcgctcttacgaagaaggag
gtggccgagggcaagaccgatatcgtcgtcggaacgcacgcgctgctcggcgccggcatc
aaattcgccaatctcggcctcctcatcatcgatgaggagcagcatttcggcgtgaagcac
aaggaacgcttgaaggagctgaagagcgacgtccacgtgctgaccctttcggcaacgccg
atcccgcgcacgctgcagctggcgatgaccggcgttcgcgagctgtcgctgatcacgaca
ccgccgatcgaccgcatggcggtgcgcaccttcatttcgcccttcgacagcctcgtcatc
cgcgagacgctgatgcgcgagcattatcgcggcggccagagcttctacgtctgtccgcgc
ttggcggacctcgaggacgtgcatgccttcctgcggtcggatgttcccgagctgaaggtt
gctgtcgcccatggtcagatgccggcgggcgaactcgaagacgtcatgaatgccttttac
gagggccgttacgacgtgctgctttcgacgaccatcgtcgaatccggcctcgatgttccg
acagccaacacgctcatcgtccaccgcgccgacatgttcggtctggcgcaactctaccaa
ctccgcggccgcgtcggccgctcgaaggtccgcgcctttgcgctcttcacgctgccggtc
aacaaggtgctgacggcgaccgccgagcgtcgcctcaaggtgctgcagtcgctggatacg
ctcggcgccggcttccagctcgccagccacgacctcgatatccgcggggcgggtaacctt
ctgggtgaggagcagtcgggccacatcaaggaagttggcttcgaactttaccagcagatg
ctggaagaggcggtcgctgaggtgaagggtgtggacgaaattcaggacaccggctggtcg
ccgcagatttcggtcgggacgccggtgatgatcccggacggatacgtgccggacctgcat
ctgcgcatggcgctctatcgtcgcctcggcgagatcactgagctcaaggagatcgatgcc
ttcggcgccgaaatgatcgaccgcttcggtccgatgccgatcgaggtgcagcatcttttg
aagatcgtctacatcaaatcgctttgccgcatcgccaatgtcgaaaagctggacgccggc
ccgaagggtgtggtcgtccaattccgcaacaaggaattcccgaacccggcaaacctggtc
gggtatatcgccaagcagggcacgatggcgaagatccgtccggaccacagcgtgtttttg
acccgcgacctgccgacgccggaaaagcggttgcagggcgcggccgtcgtcatgacgcag
ctggccgaaatggcaaagccgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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