KEGG T01803: RGE

Rubrivivax gelatinosus: RGE_26430

Entry

RGE_26430 CDS T01803

Gene name

ligD

Definition

ATP-dependent DNA ligase LigD (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rge Rubrivivax gelatinosus

Pathway

rge03410	Base excision repair
rge03420	Nucleotide excision repair
rge03430	Mismatch repair
rge03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rge03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rge03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rge03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rge03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DNA_ligase_OB_2

Other DBs

NCBI-GI:

383758496

NCBI-GeneID:

12026758

UniProt:

I0HSJ5

Position

2785388..2787943

AA seq 851 aa
MPRTAAPARDPLQHYRERRDFRATPEPGADAVQPGADTGRFVIQKHDATRLHYDFRLELD
GVLLSWAVPKGPSLDPADRRMAVRTEDHPLAYADFEGRIPAGHYGAGQVIVWDRGSWTPL
AEPRAALAAGKLPFELDGEKLHGAWELVRMKPKPGERGENWLLFKKRDAQARPRAEFDVV
AEQPDSVAATAADKPRRRQSRAALALDSVAPKAPQPETLAPQLATLASAAPSSGSWLYET
KFDGYRLLARIRRGVPRLFTRNGHDWTDKLPALAAALKGLGLQSAWIDGELVALGSRGAA
DFNALQNAFDGRDTARLLYYVFDLPYVQGRDLRELALDTRRALLQSLLDEHPLDGVRFSE
ELPAGGAGPLATACERQLEGVIAKRRDAPYRSLRSEAWLKLKCRRRQEFVVAGYTERTNA
SGEIGSLILAVHDADGRLVHAGKVGTGWDTRAARDLFTRLQPLAREAVPFAAGTPSPGRW
SRRAPGLERWVRPEFVVEVEFAEWTPGGSVRHAVFVGVREDKPAAQVLRERAVVPDTAPS
AAPTASSSGRIARVRITHGERIVDKASGLSKLDLLRWYDGVAERMLPHLKARPVALLRAP
QGVGRPVFFQKHAERTEIPGLVLLDPALWPGHEPLMEIRSAEALLSAAQMNTIEFHTWNA
TTRTIAKPDRLVFDLDPGEGVDFAAVREGALLVRTLLDELGLASWLKTSGGKGLHVVVPV
APRVAVDVVKPFSRAVVAHLAEQVPERFVVRSGPANRVGRIFVDWLRNGEGATTVAAFSA
RARPGLGVSIPVSWDALPELRGGDQWTLANAREHLSFEREDPWAAFWTTRQALAPAMRRL
GFDPRAGGDGR

NT seq 2556 nt +upstreamnt +downstreamnt
atgcccagaaccgccgccccggcccgcgacccgctgcagcactaccgcgaacgccgcgat
ttccgcgccacgccggaaccgggcgccgacgcggtgcagcccggcgccgacaccggccgc
ttcgtcatccagaaacacgacgcgacgcggctgcactacgacttccggctggaactcgac
ggcgtgctgctgtcctgggccgtgcccaagggccccagcctggacccggccgaccggcgc
atggcggtgcgcaccgaggaccacccgctggcctacgccgacttcgaaggcaggatcccg
gccggccattacggcgccggccaggtcatcgtctgggaccgcggcagctggacgccgctg
gccgaaccgcgcgccgcgctggccgccggcaagctgccgttcgagctcgacggcgagaag
ctgcacggcgcctgggagctggtgcgcatgaagcccaagcccggcgagcgtggcgagaac
tggctgctgttcaagaaacgcgacgcccaggcgcggccacgcgccgagttcgacgtcgtc
gccgaacagcccgacagcgtcgccgcgacggctgccgacaagccccggcgccggcaaagc
cgcgccgcgctggcgctcgacagcgtcgcgcccaaggcgccgcagcccgagacgctggcg
ccgcagctcgcgacgctggcctcggcggcaccgagcagcggcagctggctctacgagacc
aagttcgacggctaccggctgctggcgcgcatccgccgcggcgtgccgcggctgttcacg
cgcaacggccacgactggacggacaagctgccggcgctggccgcggcgctgaagggcctg
gggctgcagtcggcctggatcgacggcgagctggtcgcgctcggcagccgcggcgccgcc
gatttcaacgcgctgcagaacgccttcgacggccgcgacacggcccgactgctctactac
gtcttcgacctgccctacgtgcagggccgcgacctgcgtgaactggcgctggacacacgc
cgtgcgctgctgcagtcgctgctcgacgaacatccgctggacggcgtgcgcttctcggag
gagctgccggccggcggcgccggcccgctggcgacggcctgcgaacgccagctcgaaggc
gtcatcgccaagcgccgcgacgcgccctaccgctcgctgcgcagcgaggcctggctcaag
ctcaagtgccgacgccgccaggagttcgtcgtcgccggctacaccgagcgcacgaacgcc
agcggcgagatcggcagcctgatcctcgccgttcacgacgccgacggccgcctcgtgcac
gccggcaaggtcggcaccggctgggacacacgcgccgcacgggatctgttcacgcggctg
cagccgctggcccgcgaggccgtgccgttcgccgccgggacgccctcgcccgggcgctgg
agccgccgcgcccccggactggaacgctgggtgcggccggagttcgtcgtcgaggtcgag
ttcgccgaatggacgcccggcggcagcgtgcgccacgcggtcttcgtcggcgtgcgcgaa
gacaagccggccgcccaggtgctgcgcgaacgcgccgtcgtgcccgacacggcgccgagc
gccgcgcccaccgcctcgtccagcggccgcatcgcgcgcgtgcgcatcacgcacggcgag
cgcatcgtcgacaaggccagcggcctgagcaagctggacctgctgcgctggtacgacggc
gtcgccgaacggatgctgccgcacctgaaagcccggccggtggcgctgctgcgcgcgccg
caaggcgtcggacggccggtgttcttccagaagcacgccgaacgcaccgagatccccggc
ctggtgctgctcgatccggcgctgtggcccggccacgagccgctgatggagatccgtagc
gccgaggcgctgctgtcggcggcgcagatgaacacgatcgagttccacacctggaacgcc
acgacgcgcacgatcgccaagcccgaccgcctcgtcttcgacctcgaccccggcgagggc
gtcgacttcgccgccgtgcgcgaaggcgcgctgctggtgcgcaccctgctcgacgagctg
ggtctggcctcgtggctgaagaccagcggcggcaagggcctgcacgtcgtcgtgccggtc
gcgccgcgcgtggcggtcgacgtcgtcaagccgttctcgcgcgccgtcgtcgcccacctc
gccgaacaggtgcccgaacgtttcgtcgtgcgcagcgggccggccaaccgcgtcggccgc
atcttcgtcgactggctgcgcaacggcgaaggcgcgacgacggtggccgcgttctcggcc
cgcgcccgcccggggctgggggtctcgatcccggtgtcctgggacgcgctgccggagctg
cgcggcggtgatcaatggacgctggccaacgcacgcgagcacctgtccttcgaacgcgag
gacccgtgggccgcgttctggaccacgcgccaggcgctggcgccggcgatgcgccgcctc
ggcttcgacccgcgcgccggcggggatggccgctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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