KEGG   Piscinibacter gummiphilus: A4W93_16195
Entry
A4W93_16195       CDS       T04831                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rgu  Piscinibacter gummiphilus
Pathway
rgu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rgu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A4W93_16195 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rgu03021]
    A4W93_16195 (rho)
   03019 Messenger RNA biogenesis [BR:rgu03019]
    A4W93_16195 (rho)
Transcription machinery [BR:rgu03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     A4W93_16195 (rho)
Messenger RNA biogenesis [BR:rgu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     A4W93_16195 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 NACHT OB_RNB AAA_22 AAA Spore_III_AA
Other DBs
NCBI-ProteinID: ARN21315
UniProt: A0A1W6LAJ1
Position
3618142..3619404
AA seq 420 aa
MHLSELKALHVSALIKMGEELEIDAVTRMRKQELMFAIMKKRAKGGEQVFGDGVLEVLPD
GFGFLRAPDASYMASTDDIYLSPSQIRRFNLHTGDAIEGEVRVPKDGERYFALVKVDRVN
GLTPEESKHKIMFENLTPLFPKEQFRLERDIKAEENITGRIVDLIAPLGKGQRALLVAPP
KSGKTVMMQNLAHAITANYPDVYLIVLLVDERPEEVTEMQRTVRGEVISSTFDEPAARHV
QVAEMVIERAKRLVEMKKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDSNALQRPKRF
FGAARNIEEGGSLTIIGTALVDTGSRMDEVIYEEFKGTGNCEIHLDRRMAEKRVYPSILL
NKSGTRREELLLKPEILQKTWILRKLLYSMDEIEAMEFILDKMKSTKTNLDFFDMMRRGG
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgcacctgtcagaactgaaagccctccacgtttccgcgctcatcaagatgggcgaggaa
ctggaaatcgacgccgtcacgcgcatgcgcaagcaggagctgatgttcgcgatcatgaaa
aagcgcgccaaggggggcgagcaggtcttcggcgacggtgtgctcgaagtgctgcccgac
ggcttcggcttcctgcgcgcgccggacgcgagctacatggcgtccaccgacgacatctac
ctgtcgcccagccagatccgccgcttcaacctccacaccggcgatgccatcgaaggtgaa
gtgcgggtaccgaaggacggcgagcgctacttcgccctcgtgaaggtcgaccgtgtcaac
ggcctgaccccggaggaaagcaagcacaagatcatgttcgagaacctgacgccgctgttc
ccgaaggaacagttccgtctcgagcgtgacatcaaggccgaggaaaacatcaccggccgc
atcgtcgacctcatcgccccgctgggcaagggccagcgcgcgctgctcgtcgccccgccc
aagagcggcaagacggtgatgatgcagaacctggcccatgccatcacggccaactacccc
gacgtctacctgatcgtgctgctcgtcgacgagcgcccggaagaagtcacggaaatgcag
cgcaccgtgcgcggcgaggtcatcagctccaccttcgacgaacccgcggcccgccacgtg
caggtggccgagatggtgatcgagcgcgccaagcgcctggtcgagatgaagaaggacgtg
gtcatcctcctcgactccatcacccgcctcgcccgcgcgtacaacaacgtgctgccgtct
tcgggcaaggtgctcaccggcggtgtcgactccaacgcgctgcagcgccccaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggctcgctcaccatcatcggcaccgcgctg
gtcgacaccggcagccggatggacgaagtcatctacgaagagttcaagggcaccggcaac
tgcgaaatccacctggatcgccgcatggccgagaagcgggtctacccgtcgatccttctg
aacaagtcgggcacgcgccgcgaggaactgctgctgaagccggaaatcctccagaagacc
tggatcctgcgcaagctgctgtactcgatggacgagatcgaggcgatggagttcatcctc
gacaagatgaagtcgacgaagaccaacctggacttcttcgacatgatgcgccgcggcggc
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system