KEGG T00382: RHA1

Rhodococcus jostii RHA1: RHA1_ro05107

Entry

RHA1_ro05107 CDS T00382

Gene name

ligC

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rha Rhodococcus jostii RHA1

Pathway

rha03410	Base excision repair
rha03420	Nucleotide excision repair
rha03430	Mismatch repair
rha03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rha03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rha03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rha03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rha03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

111022074

NCBI-GeneID:

4222658

UniProt:

Q0S6E8

Position

5443353..5444396

AA seq 347 aa
MDLPVMPPLQPMLAKAASSVPAQPESGLAWSYEPKWDGFRTLVFRDGDEVVLGSRGGKDL
ARYFPELVRAVKDELPQRCVVDGELVVPRNIDGRTRLDWESLSERIHPAESRVTMLSEKT
PAQFVAFDLLALGDRDLSREDFSVRRAQLVDTIGGGPSCHVTAATESSATATEWFEAFEG
AGLDGVVAKKLVGPYLPNKREMVKVKHARTADCVVIGYRPHKSQPGIGSMLLGLYDGDQM
AMVGGASAFTAARRIELLAELDELRVGDDVVADGAPTRWQSGNDRTWVPLRPERVVEVAY
DQMEGARFRHAARFLRWRPDRTPDECTFQQLEVPVRYDLADVLAGGS

NT seq 1044 nt +upstreamnt +downstreamnt
gtggatctccccgtgatgcctccgttacagccgatgctcgcgaaggctgcgtcgtccgtt
ccggcgcaaccggagtccggcctcgcctggtcctacgaaccgaaatgggacggtttccgc
accctcgtcttccgcgacggcgacgaggtggtgctcgggtcccgcggcggaaaggatctg
gcgaggtactttcccgaactcgtccgggcagtgaaggacgaactgccgcagcggtgcgtg
gtggacggcgaactcgtcgtcccgcgcaacatcgacggccgcacccggctcgactgggag
tcgttgtcggagcgcattcatccggccgagagccgggtgacgatgctgtccgagaagacc
ccggcgcagttcgtcgcgttcgatctgctcgccctgggcgaccgcgacctcagccgggag
gacttctccgtacgccgcgcgcagctcgtcgacaccatcggcggcggacccagctgccac
gtcaccgccgccaccgaatccagtgcgacggccaccgagtggttcgaggcgttcgagggt
gccggcctcgacggggtggtggcgaagaagctggtgggcccgtacctgcccaacaagcgg
gaaatggtgaaggtgaagcacgcccgcaccgccgactgcgtcgtcatcggataccggccg
cacaagagtcagccggggatcgggtcgatgctgctcggactgtacgacggcgaccagatg
gcgatggtcggcggtgcgtcggcgttcacggccgcgcggcggatcgaactgctcgccgaa
ctcgacgagctgcgcgtcggcgacgacgtggtcgcggacggcgcgccgacgcggtggcag
tcgggcaacgaccgaacctgggtgccgctgcgccccgaacgcgtcgtcgaggtggcgtac
gaccagatggagggtgcccggttccggcacgccgcgcggttcctgcgctggcgcccggac
cggacgcccgacgagtgcacgttccaacaattggaggtcccggtgcgatacgaccttgcc
gacgtcctggccggaggttcctag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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