KEGG   Rhodanobacter denitrificans: R2APBS1_3412
Entry
R2APBS1_3412      CDS       T02495                                 
Name
(GenBank) diaminopimelate decarboxylase
  KO
K01586  diaminopimelate decarboxylase [EC:4.1.1.20]
Organism
rhd  Rhodanobacter denitrificans
Pathway
rhd00300  Lysine biosynthesis
rhd00470  D-Amino acid metabolism
rhd01100  Metabolic pathways
rhd01110  Biosynthesis of secondary metabolites
rhd01120  Microbial metabolism in diverse environments
rhd01230  Biosynthesis of amino acids
Module
rhd_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:rhd00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    R2APBS1_3412
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    R2APBS1_3412
Enzymes [BR:rhd01000]
 4. Lyases
  4.1  Carbon-carbon lyases
   4.1.1  Carboxy-lyases
    4.1.1.20  diaminopimelate decarboxylase
     R2APBS1_3412
SSDB
Motif
Pfam: Orn_Arg_deC_N Orn_DAP_Arg_deC Ala_racemase_N HemN_C
Other DBs
NCBI-ProteinID: AGG90475
UniProt: M4NHS6
Position
3608022..3609326
AA seq 434 aa
MSTPTTSRPTTTASATQADDAHRHFDGVDLQALAQRIGTPLHAYSASAIHQRIGELQAAL
TGLDATICFAVKANPNLAILQLMANAGVGADIVSVGELRRALNAGMPAERIVFSGVGKST
DEIAGALSVGIMRFNVESLDELHTLQRVAQAQEVTARAAVRINPDVDAQTHAKISTGKSE
NKFGVSIDEARRWFAERSQLTHVQLDGLHVHIGSQILSVEPFRLALQRVAAFWRELEQAG
HPVNSIDVGGGLGVCYRAGVDQPVAAADYVGAIREALAGFRGRLLLEPGRYLVAEAGVLL
TRVIRVKPGIERTFLVLDAAMNDLQRPSLYDAWHDIVPVADERRPLATYDIVGPVCETGD
TFARARELPECAAGDLLLIKATGAYGTSMASTYNSRPLAAEVLLQRGRYAVVRRRQHFED
MIAGEQPARNWETP
NT seq 1305 nt   +upstreamnt  +downstreamnt
atgtccacgccaacaaccagccgcccgacgacgacggcaagtgccacgcaggcggacgac
gcccaccgccacttcgacggggtcgacctgcaggccctggcgcagcggattggcacgccc
ctgcatgcctactccgccagcgcgatccaccagcgcatcggcgaactccaggccgcgctg
accggcctcgacgccaccatctgcttcgcggtcaaggccaaccccaacctcgccatcctg
caattgatggcgaacgccggcgtcggtgccgacatcgtctcggtcggcgagctgcgccgc
gcgctcaacgccggcatgccggccgagcgcatcgtgttctccggcgtcggcaagagcacc
gacgaaatcgccggcgcgctgagcgtcggcatcatgcgcttcaacgtcgaatcgctggac
gaactgcataccctgcagcgggtcgcgcaggcgcaggaggtgaccgcgcgcgccgccgtg
cgcatcaaccccgacgtggacgcgcagacccacgcgaagatctccaccggcaagtcggag
aacaagttcggcgtcagcatcgacgaggcgcgccgctggttcgccgaacgcagccagctc
acccacgtgcagctcgacggcctgcacgtgcacatcggttcgcagatcctcagcgtcgaa
ccgttccggctggcactgcagcgggtcgccgcgttctggcgcgaactcgagcaggccggc
catccggtcaacagcatcgacgtcggcggcggactgggcgtgtgctatcgcgccggcgtg
gaccagccggtggccgcggccgattacgtcggcgcgatccgcgaggcgctggccggtttc
cgcggccgcctgctgctggaaccgggccgctacctggtcgccgaggcgggcgtgctgctg
acccgggtgatccgcgtcaaacccggcatcgaacgcacgttcctggtgctggacgcggcg
atgaacgacctgcagcggcccagcctgtacgacgcctggcacgacatcgtgccggtagcg
gacgagcggcgcccgctggccacctacgacatcgtcggcccggtgtgcgagaccggcgat
actttcgcccgcgcacgcgaactgcccgagtgcgccgccggcgacctgttgctgatcaag
gccaccggcgcgtacggtacgtcgatggcctccacctacaactcgcggccgctggccgcc
gaggtactgctgcagcggggccgctacgccgtggtgcggcggcgccagcacttcgaggac
atgatcgccggcgaacagccggcccggaactgggaaacgccatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (10)   
   KEGG PATHWAY (6)   
   KEGG MODULE (4)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (28)   

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