KEGG T00888: NGR

Sinorhizobium fredii NGR234: NGR_b04710

Entry

NGR_b04710 CDS T00888

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rhi Sinorhizobium fredii NGR234

Pathway

rhi03410	Base excision repair
rhi03420	Nucleotide excision repair
rhi03430	Mismatch repair
rhi03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rhi03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rhi03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rhi03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rhi03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

RhizoBase:

UniProt:

Position

pNGR234b:complement(472205..474757)

AA seq 850 aa
MALEIYRKKRNFGSTPEPKGRKARRSGNSFVVQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLIPGEKRLAVHVEDHPLEYGDFEGTIPKGEYGGGTVILWDRGTWSPIGDADRGYAKGH
LDFELSGEKLGGRWHLVRMAGKPREKRENWLLIKGDDEAARSEDDPDILEERPESVLTGR
EIKDVAGEEPGWSSKIGRIRKKGRGTTKAASQQAERQAVANVPDPAKIKGAKAAPLPDFV
EPALATLVSSAPAGERWLHEIKFDGYRLQARIEAGRVKLLTRGGLDWTKKFGKTLVSASQ
ALPIGTALIDGEIVVETGSGASDFSALQADLSEGRSDRFRFYVFDLLHLDGYDLRPLPLT
KRKELLGQLIGEADGIIRFSNHFEEEGKLVLRHACRLSLEGVVSKLRDAPYRTGRNKSWV
KSKCSARQEFVVAGYVPSTTSRKAIGSLVLGVYDAGKLHHVGRVGTGFTAALAEDLFKRL
DRLRTTHSPFSARLSAEDARQVRYVKPELVAEIEFRAWTADGHLRHASFRGLREDKLASD
IVREAPRSATAQPKPPQRTVKLTHPDRLYWPDEGVTKEGLADYYAEVWRFIAPHIVGRPL
ALVRCPNGIAGEQFFQKHAWKGLNPNIVLVNDPKEPPDEQLLSIRNLDGLTALVQSAVLE
IHPWGSTVADWERPDTIIMDLDPGDDVPFEAVIEAAFETADRLKAAGLVPFVKTSGGKGL
HVVAPLKPKAEWPVAKAFTKSIADAMASDSPDRFVSTITKSKRRGKILVDYLRNQRGATA
VAAYSTRARPGAAVSMPLSWDELAPGIGPAYFTVENTPTRLASLSTDPWGEFRAAAVPLA
EPKVRRKKAA

NT seq 2553 nt +upstreamnt +downstreamnt
atggctctcgagatctatcggaaaaagcgcaatttcggatcgacccctgaaccgaaaggc
cgcaaggcgcgccgctcgggcaacagcttcgttgtccagaagcacgacgccacacgcctg
cactatgatttccgcctggagatggatggcgttttgaagagctgggccgtcaccaagggg
ccgagccttatccccggcgagaagcgactggcggtgcacgtcgaggatcacccgctcgaa
tatggggatttcgaggggacgatcccgaagggagaatatggcggcggaaccgtaattctc
tgggatcgtggcacctggtcgccgattggcgacgcggatcggggctacgccaaggggcat
ctcgacttcgaactcagtggcgaaaagcttggcgggcgctggcacctggttcggatggcc
ggcaaaccccgcgaaaagcgtgagaattggctgctgatcaagggtgacgacgaggcggcc
agatccgaagacgaccccgacattctcgaggaacggccggaatcggttctgaccggccgc
gaaatcaaggatgtggcgggcgaagagccgggctggtcatcgaagataggcaggatacgc
aagaagggccgcggcacgacgaaagccgcttcgcaacaagcggagcgccaggccgttgcc
aacgttcctgatcccgccaaaataaagggcgccaaggctgcgcctttgccggatttcgtc
gagccggccttggccacccttgtttcatccgctcctgccggcgagcgctggctccacgaa
atcaagttcgacggttacaggctgcaggcgcggatcgaagctggccgcgtcaagcttctc
acccgcggcgggctggactggaccaagaaattcggaaagacgctggtctcggcctcgcag
gctctgccgatcggaacggcgctgatcgatggtgagatcgtcgtcgaaaccggttctggt
gcgtcggacttctcggcgctgcaagccgacttgagcgaaggtcgcagcgaccgcttccgg
ttttacgtgttcgaccttcttcatctcgatggctacgatctgcgccccctgccgctcacc
aaacggaaagagctgctcggacagctgatcggcgaagcggacgggatcatccgcttcagc
aatcacttcgaggaggaaggcaagctggtgctgcgtcacgcctgcaggctgagccttgaa
ggtgtcgtctcgaaactgcgcgacgcgccctatcgcaccggccggaacaagagctgggtc
aaatccaagtgctcggcacgccaggagttcgtggtcgctggctacgtgccctcgaccacg
tcgagaaaggcgatcggctcgctggtgctcggcgtctacgatgccggcaagcttcaccac
gtcgggcgggttggcacggggttcactgcggcgctcgccgaagacctcttcaaaagactg
gaccgcctgaggacgacgcatagcccgttttcggcgcggcttagcgcggaagacgcgcgc
caggtgcgatacgtcaagcccgagctcgtcgccgagatcgagttcagggcctggaccgcc
gacggccatctgcgccacgcgtcgttccggggtttgcgagaagacaagctcgccagcgac
atcgtgcgggaggcacccaggtccgcgaccgctcagcccaaaccgccgcagcggaccgtc
aagctcacgcacccggaccggctctactggcctgatgaaggcgtgacgaaagaggggctc
gccgactactacgccgaggtctggcgcttcatcgcgccgcatatagtcggacgtcccctg
gcgttggtccgatgcccgaacggcattgccggcgagcagtttttccagaaacacgcctgg
aaggggctgaaccccaacatagtgctcgtcaatgatccgaaggagccacccgacgaacag
cttttgagcatcaggaacctcgacggcctgacggcgctcgtccagtcagccgttctcgaa
atccacccgtggggatcgacggtggccgactgggaaaggccggacacgatcatcatggat
cttgatccgggcgatgacgtgccattcgaagctgttatcgaagccgcgtttgagaccgct
gaccggctgaaagcggccggtcttgttcccttcgtcaagacatccggcggcaaaggcctt
cacgtcgtagcccccttgaagccaaaggcagaatggcccgtagccaaagcttttaccaag
tcgattgccgacgcgatggcgtccgacagtcccgaccgcttcgtgtcaacgatcaccaaa
tcgaagcgccgtggcaagatcctggtcgattatctcagaaaccaacgcggagcgactgcc
gttgcagcctattcgacgagagcgcgaccgggggctgcggtatcgatgccgctctcctgg
gatgaactggcccctggcataggcccggcctacttcacggtggagaatacgccgacgcgg
cttgcatctttgagcaccgacccgtggggggaatttcgcgccgcggccgttccactggcg
gagccgaaggtcagacgaaagaaagctgcctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
   RHIZOBASE-RHI (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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