KEGG T00888: NGR

Sinorhizobium fredii NGR234: NGR_c35580

Entry

NGR_c35580 CDS T00888

Gene name

dnaX

Definition

DNA polymerase III subunits gamma and tau (EC:2.7.7.7)

Orthology

K02343

DNA polymerase III subunit gamma/tau [EC:2.7.7.7]

Organism

rhi Sinorhizobium fredii NGR234

Pathway

rhi00230	Purine metabolism
rhi00240	Pyrimidine metabolism
rhi01100	Metabolic pathways
rhi03030	DNA replication
rhi03430	Mismatch repair
rhi03440	Homologous recombination

Module

rhi_M00260

DNA polymerase III complex, bacteria

Class

Metabolism; Nucleotide metabolism; Purine metabolism [PATH:rhi00230]
Metabolism; Nucleotide metabolism; Pyrimidine metabolism [PATH:rhi00240]
Genetic Information Processing; Replication and repair; DNA replication [PATH:rhi03030]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rhi03430]
Genetic Information Processing; Replication and repair; Homologous recombination [PATH:rhi03440]

SSDB

Motif

Pfam:

DNA_pol3_gamma3 DUF3646 DNA_pol3_delta2 AAA AAA_22 AAA_17 AAA_5 AAA_14 RuvB_N SKI AAA_30 AAA_18 AAA_16 SRP54 DUF815 UPF0079 Zeta_toxin AAA_33 Rad17 RNA_helicase CbiA ABC_tran AAA_28

Other DBs

NCBI-GI:

NCBI-GeneID:

RhizoBase:

UniProt:

Position

3772663..3774600

AA seq 645 aa
MPASHLLRPVGTRVRTAAGSMSDEAPISSPVSTVEKPAAYRVLARKYRPKDFSDLMVGQE
PMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARALNYKTAEIDKPTIDLRIPGEH
CQAIMDGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNG
LLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLRRISASDLVGLFSTILNKEAVRF
EPEALAMVARAAEGSARDGLSLLDQAIAHGGGSVEMETVRSMLGLADRARIVDLFEHIVK
GDAAAALGEFAAQYEAGANPTVVLTDLADFTHLVTRMKYVPEAANDQSFSEIERRRGAEF
AGSVAVTTLSRIWQMLLKGIPEAESSARPAGAAEMVLIRLAHAAHLPSPEEAARRLLELS
GGEAGDGRPAPARTSGNTQAQAGQPVQARSVEAAPVQRPSANGATMLRAVPDVAAQPITV
GRIEDRPAQAPAAKAEPKVPVNSVGDIADLCAKNRDIKLKTLVRGFLRLVHIEPGRLDVN
LSDDAPKTLLNELAVKLKEWTGIHWVVSYSREPGEPTLVEAEQRAQEQRVNDARQDPDVA
AILARFPGARITDVRIRAAEEEVEDLALAAAESADGDIVPGDDIE

NT seq 1938 nt +upstreamnt +downstreamnt
gtgccagcctcccaccttctccgtcctgtcgggacaagagttcgaacagcggcagggtcg
atgagcgacgaagcgcccatttcatccccagtttcaaccgtcgagaaaccggccgcctac
cgcgtcctggcgcgcaaatatcgcccaaaggatttctccgatctgatggtcggccaggag
ccgatggtgcgcacgctcaccaacgccttcgagaccggccgcatcgcccaggcctatatg
ctgaccggcgtgcgcggcgtcggcaagacgacgacggcgcgcatcctggcgcgggcgctg
aactataagaccgccgagatcgacaagccgacgatcgacctgcgcatccccggcgagcac
tgccaggcgatcatggacggccgccatgtcgacgtcatcgagatggacgccgcctcgcat
accggtatcgacgacatccgcgagatcatcgagcaggtgcgctaccggcccgtttcggcg
cgctacaaggtctatatcatcgacgaagtgcacatgctctcgacccaggccttcaacggc
ctgttgaagacgctcgaggagccgccggagcatgtgaagttcatcttcgcgacgaccgag
atccgcaaggttccgatcactgtcctgtcgcgctgccagcgcttcgacttgcggcgcatc
agtgcctccgacctggtcgggctgttctccaccatcctcaacaaggaggccgtgcgtttc
gagccggaagcgctggcgatggtggcgcgtgccgcggaaggctcggcgcgcgacggcctg
tcgctgctcgaccaggcgatcgcccatggcggcggttcggtcgagatggagacggtgcgc
tcgatgctcggtcttgccgaccgggcccgcatcgtcgatctcttcgaacacatcgtcaag
ggcgatgcggccgcggcgctcggcgaattcgcggcacaatacgaggcgggcgccaacccg
acggtcgtcttgaccgatcttgccgacttcacccatctggtgacgcggatgaaatatgtg
cccgaggcggcgaacgaccagtccttcagcgagatcgaacgccggcgcggcgccgagttc
gccggcagcgtcgcggtcaccaccctgtcgcgtatctggcagatgctcctgaagggcatt
cccgaggcggaaagctcggcgcgcccggccggcgctgccgagatggtgctgatccggctc
gcccatgccgcccatcttccttcgccggaagaggcggcgcggcgccttctcgagctttcg
ggcggcgaggccggcgacgggcgcccggcgccggcccgcactagcggcaatacccaggct
caggccggtcagccggtccaggcccgctccgtcgaggctgcacccgtccagcgcccgtcc
gcgaatggcgccaccatgctgcgggccgtgcccgatgtggcggcccagccgatcactgtc
gggcggatcgaggacaggccggcgcaggcacctgccgcgaaggcggagcccaaggttccg
gtcaattcggtgggcgacatcgccgatctctgcgcgaagaaccgcgacatcaagctgaag
acgctggtgcgcggcttcctgcggctcgtgcatatcgagcccggcaggctcgacgtcaac
ctttccgacgatgcgccgaagacgctgctcaacgagctggccgtcaagctcaaggaatgg
accggaatccactgggtcgtcagctacagccgcgagccgggcgaaccgacgctcgtcgag
gccgagcagcgcgcccaggagcagcgcgtcaacgacgcccgtcaggatccggacgtcgcc
gcgatcctggcgcgctttccgggcgcgagaatcaccgacgtgcgcattcgcgccgcggag
gaggaggtcgaagacctcgctctggcggcggccgaatccgccgatggcgacatcgtcccc
ggcgacgacatcgagtag

All links

Pathway (7)   
   KEGG PATHWAY (6)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
   RHIZOBASE-RHI (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (23)   
   Pfam (23)   
All databases (49)   

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