KEGG   Rhizobium favelukesii: LPU83_0121
Entry
LPU83_0121        CDS       T03046                                 
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunits gamma and tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
rhl  Rhizobium favelukesii
Pathway
rhl03030  DNA replication
rhl03430  Mismatch repair
rhl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rhl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LPU83_0121 (dnaX)
   03430 Mismatch repair
    LPU83_0121 (dnaX)
   03440 Homologous recombination
    LPU83_0121 (dnaX)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhl03032]
    LPU83_0121 (dnaX)
   03400 DNA repair and recombination proteins [BR:rhl03400]
    LPU83_0121 (dnaX)
Enzymes [BR:rhl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     LPU83_0121 (dnaX)
DNA replication proteins [BR:rhl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     LPU83_0121 (dnaX)
DNA repair and recombination proteins [BR:rhl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     LPU83_0121 (dnaX)
SSDB
Motif
Pfam: DNA_pol3_gamma3 DUF3646 DNA_pol3_delta2 AAA AAA_22 AAA_16 AAA_30 AAA_5 AAA_14 AAA_19 RuvB_N AAA_24 AAA_18 SKI TsaE SRP54 AAA_assoc_2 DUF815 Rad17 AAA_2 CbiA nSTAND3 VapE-like_dom AAA_28 RNA_helicase
Other DBs
NCBI-ProteinID: CDM55807
UniProt: W6R375
Position
123013..124881
AA seq 622 aa
MSDTERQSKDAASTGTGYRVLARKYRPKDFTDLMVGQEPMVQTLTNAFETGRIAQAYMLT
GVRGVGKTTTARILARALNYKTSEVDKPTIDLRIPGEHCQAIMEGRHVDVIEMDAASHTG
IDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIR
KVPITVLSRCQRFDLRRISASDLVGLFTTIASKEGIEAEPDALAMIARAAEGSARDGLSL
LDQAIAHGGGAVLTEAVRGMLGLADRARIVDLFHYIVKGDVAAALGEFESQYEAGANPVA
VLTDLADFTHLVTRLKYVPDAANDPSLSEIERTKAAEFAQGVAVTALSRIWQMLLKGIPE
AEGSSRPAGAAEMVLIRLAHAAHLPAPEDAARRLAEFSETNGGSRPSAPSGNSGGGATVN
YQGNLAARSTDPIPRPQPVGPTAMLHAVPNPDPHYVPVGRVETKPTEAPKPLVPVNSIAD
LANLAGDKRDAKIKALVRNFVRPVRIEPGRLDVTLTEGAPGTLLNELAVKLKDWTGIHWI
VSLSREQGQPTIVEAEASAKAQQVSDARQDPDVAAILAQFPGAKIIDVRVRAPEPDEEEE
VKAPAAAESDEGDILPGDDIIF
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgagcgacaccgagcgacaatcaaaagatgccgcctcgacgggcaccggataccgggtg
ctggcacgcaaataccgccccaaggatttcacggatctgatggtcggccaggagccgatg
gtccagaccctgaccaacgctttcgagaccggccgcattgcgcaggcctacatgctgacc
ggtgttcgcggggtcggcaagacgacgacggcccgcatccttgcccgcgccctgaactac
aagacctcagaggtcgacaagccgacgatcgatctgcgcattcccggcgagcactgccag
gcgatcatggaaggccggcatgtcgacgtcatcgagatggacgccgcctctcataccggt
atcgacgatatccgcgagatcatcgagcaggtgcgctaccgtccggtttcggcgcgctac
aaggtctacatcatcgacgaagtgcacatgctttcgacgcaggccttcaacggcctgctg
aagacgctcgaagagccgcccgagcatgtgaaattcatcttcgccaccaccgaaatccgt
aaggtgccgatcacggtcctgtcgcgctgccagcgctttgacctgcgccgcatcagcgcc
tcggatctcgttggcctcttcaccacgatcgcatcgaaggaaggcatcgaggcagagccc
gatgcgctggcgatgatcgcccgcgccgccgaaggctcggcacgtgacggtctgtcgctg
cttgatcaggcaatcgcccatggcggcggcgccgttttgaccgaagccgtacgcggcatg
ctcggccttgccgaccgcgctcgcatcgtcgatctctttcattacatcgtcaaaggtgat
gttgctgcggcgctgggcgaattcgaaagccagtacgaagctggtgccaatccggttgcg
gtgctgaccgatcttgccgatttcacgcatcttgtgacgcggctgaagtatgtgccggac
gcggcgaacgacccttcgctcagcgagatcgaacgcacaaaggctgcggaattcgcccag
ggcgtggcggtgacggcgctgtcgcgcatctggcagatgctgttgaagggcattccggaa
gccgaaggctcctcgcgcccggccggcgccgccgagatggtgctgatccgactggcgcat
gccgcgcatctaccggcacctgaggatgctgcccgtcgcctcgcggagttttccgagacg
aacggtggaagccgtccgtctgcgccgtcgggcaacagcggtggcggcgcaacggtgaac
tatcagggcaatctggcggcgcgatcgacggacccgataccgcgtccgcagcccgtgggg
ccgaccgccatgctgcatgcggttcccaatcccgatccgcattacgtgccggtcgggcgt
gtcgagacgaagcccaccgaggcgccgaagccattggtgccggtcaattccatcgccgat
ctcgccaatctagcaggtgacaagcgcgatgcgaagatcaaggcgctggtgcgcaacttc
gtccgtcccgttcgcatcgaacccggtcgcctcgacgtcactctgaccgaaggcgccccc
ggcacgcttctcaacgaactggcggtcaagctcaaggactggacgggcatccattggatc
gtcagcctcagccgcgagcagggccagccgacaatcgtcgaggccgaagccagcgccaag
gcgcagcaggtgagcgacgcccggcaggacccggatgtggcggcgatcctcgcgcagttt
ccgggcgccaagatcatcgacgtgcgcgtgcgggcaccggagccggacgaggaagaggag
gtcaaggcgcccgccgctgccgaatccgatgaaggcgacatcctgcccggcgacgacata
atattctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (25)   
   Pfam (25)   
All databases (38)   

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