KEGG   Rhizobium favelukesii: LPU83_1935
Entry
LPU83_1935        CDS       T03046                                 
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rhl  Rhizobium favelukesii
Pathway
rhl03410  Base excision repair
rhl03430  Mismatch repair
rhl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rhl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    LPU83_1935 (recJ)
   03430 Mismatch repair
    LPU83_1935 (recJ)
   03440 Homologous recombination
    LPU83_1935 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhl03400]
    LPU83_1935 (recJ)
DNA repair and recombination proteins [BR:rhl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     LPU83_1935 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     LPU83_1935 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LPU83_1935 (recJ)
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB DUF2529 ThiS-like
Other DBs
NCBI-ProteinID: CDM57596
UniProt: W6RTG5
Position
1877986..1879806
AA seq 606 aa
MRAADHMELPADPVQRAFLGVEKSVLDNRWISRLDQAGQNRALAMSQMHGMPELIARVLA
GRGVTVDEALEFLDPTLRGLMPDPYTLTDCEKAAKRLAQAIRGQQQVAIFGDYDVDGASS
SALMFRFLKHFGAKAEIYIPDRIFEGYGPNAAAIGSLIGNGARLIVTVDCGSTSHDALAE
ACRRNTDVVVIDHHQVTHDLPPCHALVNPNREDDLSGQGHLCAAGVVFLVLVATLRLLRE
AGDPRVRSIDLLQWLDIVALATVCDVVPLKGLNRAYVVKGLIAARHQGNAGLSALFRKAG
LAGPVTPYHFGFLVGPRINAGGRIGDAALGSRLLTLDDTGEAEAIAQKLDELNRDRQAME
AAMLQEAEAEALAEYGDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSG
KGTGSGRSINGFDMGKMVRAAVDEGLLVKGGGHAMAAGLTVERDKLGHLRSFFTERAEKT
VAALVANETLKIDGAIAASGATIDLIDRLETAGPYGSGHSQPLFAIPAHRVRDSRLVGDK
HVKVTLEAMDGARLDGIAFRAADTLLGSLLLNSRGASLHVAGSLGADHYQGSRRIQLRVQ
DAAPAR
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgagggcagcagaccacatggaacttccggccgatccggtgcaacgcgcatttctgggg
gtggagaagtccgtcttggacaaccgctggatatcgcgcctggatcaagccggtcagaac
cgggcgctcgccatgtcccagatgcacggaatgcctgagctcattgcgcgcgttctcgct
ggacgtggtgtcaccgtcgatgaggcgctggagtttcttgatccgacgcttcgcggcttg
atgcccgacccctatacgctgacggattgtgagaaggcggccaagcggctcgcgcaagcc
attcgcggtcagcagcaggtcgcgattttcggtgactacgatgtcgacggcgcctcctcc
tcggcgctgatgttccgttttctcaagcactttggcgccaaggccgagatctacattccc
gaccgcattttcgagggctacggccccaacgcggccgcaatcggcagcctgatcggcaac
ggtgcacggctgatcgtcaccgtcgattgcgggtctaccagccatgatgctctggctgag
gcttgcaggcgcaacaccgacgtcgtggtgattgatcatcaccaggtgacacatgatttg
ccgccttgccatgcgctggtcaatccgaaccgcgaggacgatctctccggccagggacat
ctctgcgccgcgggcgtcgtattcctcgtactcgtcgcgacattgcgcctgctgcgagag
gctggggatccacgcgtgcgatcgatcgacctgctgcaatggcttgatattgtcgcgctt
gcgaccgtttgcgacgttgtccctctgaagggcctgaaccgtgcctatgtcgtcaagggg
ctgatcgccgcacgccatcagggcaatgccggcctgtccgctctgtttcgcaaggccggc
cttgccggcccggtgacaccctatcactttggcttcctggttggcccgcgcatcaatgcg
ggtggacgcatcggcgatgcggcgctcggcagccgcctgctcaccctggacgatacgggc
gaggccgaggctatcgcccagaaactggatgagctcaaccgcgacaggcaggcgatggaa
gcggcaatgctgcaggaagccgaggccgaggcgctggcggaatacggggatggcgagggg
gcctcggtcatcgtcactgcgcacgaaaagtggcacccaggcatcgtcggcctgattgcc
gcccgcctcaaggaaaaattcaagcgtccagccttcgcaattgctttcgatccatccggc
aagggcaccggctcgggccgctcgatcaacggttttgacatgggcaagatggtgcgcgcg
gcagtcgatgagggcttgctggtcaaaggcggtggccacgctatggccgccggtctcacc
gtcgagcgcgacaagctcggccacctgcgcagtttcttcaccgagcgtgccgaaaagacg
gtagcggcgctcgtggccaacgaaaccctgaaaatcgacggtgcgattgctgccagcggt
gcaacgatcgatctgatcgatcgcctggagaccgccgggccttacggttctggccattct
caaccgctcttcgcgattcccgctcatcgagtccgcgattcccgtctggttggcgacaag
cacgtgaaggtgacgctcgaagccatggacggcgcccgcctcgacgggattgcttttcgg
gccgccgatacgctgctcggcagcctgctcctgaattccaggggcgccagcctgcacgtt
gcaggctcgctcggcgcggaccactatcagggctcccgacgcatccagttgcgcgttcag
gacgctgcgcctgcccgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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