KEGG   Rhodococcus fascians PBTS 2: A3Q41_00391
Entry
A3Q41_00391       CDS       T05030                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rhs  Rhodococcus fascians PBTS 2
Pathway
rhs03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rhs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    A3Q41_00391 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rhs03021]
    A3Q41_00391 (rpoB)
   03400 DNA repair and recombination proteins [BR:rhs03400]
    A3Q41_00391 (rpoB)
Enzymes [BR:rhs01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     A3Q41_00391 (rpoB)
Transcription machinery [BR:rhs03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     A3Q41_00391 (rpoB)
DNA repair and recombination proteins [BR:rhs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      A3Q41_00391 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AMY21715
UniProt: A0A143QEU6
Position
complement(419371..422928)
AA seq 1185 aa
MSADRSCQSTERRDPREVLEGRILAVSSQTKAVVGTPGAPRRVSFANIREPLEVPGLLDV
QTDSFEWLVGAQSWRDRAAARGDSGVSGGLEDILTELSPIEDFSGSMSLSFSDPRFDEVK
ASTDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVV
SQLVRSPGVYFDHSIDKTTEKDLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTV
LLKALGWSTEQITERFGFSEILMATLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLL
ENLFFKDKRYDLARVGRYKINKKLGLNSGQPIVASTLTEEDIVATIEYLVRLHAGETSMT
APEGVEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQT
LINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH
PSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGKVTDDVDYLTADEE
DRHTLAQANSPVDDSGHFIEDKILVRRKGGEVEFVSSDDIDYMDVSPRQMVSVATAMIPF
LEHDDANRALMGANMQRQAVPLVRSEAPIVGTGMELRAAVDAGDVVITEKTGVVEEVSAD
YVTVMADDGSRKTYRMRKFARSNQGTCANQRPIVDEGQRVESGQVLADGPCTENGEMALG
KNLLLAIMPWEGHNYEDAIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNV
SDEVLADLDERGIIRIGAEVRDGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTS
LKVPHGENGKVIGIRVFSRDDDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIG
KILPQEDMPFLPDGTPIDIILNTHGVPRRMNIGQVLETHLGWIGKTGWNVQIAADGSKPD
WAERLPEEMLAAPADSNIATPVFDGAKENQLAGLLESTIPNRDGEQMVGSDGKATLFDGR
SGEPFPYPVSVGYMYIIKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECW
AMQAYGAAYTLQELLTIKSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLN
VEVLSSDGAAITMADGDDEDLERAAANLGINLSRNEAATVDDLAQ
NT seq 3558 nt   +upstreamnt  +downstreamnt
gtgtcagctgacaggtcctgtcagtcgacggaacggcgcgacccgcgtgaggtgctggaa
ggacgcatcttggcagtctctagccagaccaaggcagttgtcggaacaccgggagccccg
aggagggtttcgttcgcgaacattcgcgagccgttggaggtacccggtctcctcgatgta
cagacggattcgttcgaatggctggtaggtgcgcagagttggcgcgaccgtgccgccgcc
cgcggagacagtggtgtctccggcggactcgaggacatcctgaccgagctctctccgatc
gaggacttctcgggctcgatgtcgctttccttctccgacccacgattcgacgaggtcaag
gcctcgaccgatgagtgcaaggacaaggacatgacgtacgcagctccgctgttcgtcacc
gccgagttcatcaacaacaacaccggcgagatcaagagccagacggtcttcatgggtgat
ttcccgatgatgaccgacaagggcaccttcatcatcaacggcaccgagcgtgtcgtcgtc
tcgcagctggtgcgttctccgggcgtctacttcgatcactcgatcgacaagaccaccgag
aaggacctgcacagcgtcaaggtcatccccggccgcggtgcttggctcgagttcgacgtc
gacaagcgcgacaccgtcggtgtgcgtatcgaccgcaagcgtcgccaacccgtcacggtg
ctgctgaaggctctcggctggtccaccgagcagatcacggagcgcttcggcttctccgag
atcctcatggccacgctggagaaggacaacaccgccggtaccgacgaggctctcctcgac
atctaccgcaagctgcgtccgggcgagccgccgaccaaggagtcggcgcagaccctgctg
gagaacctgttcttcaaggacaagcgctacgacctcgctcgcgtgggtcgctacaagatc
aacaagaagctcggcctcaactcgggccagcccatcgtggcgtcgaccctcaccgaggaa
gacatcgttgcgaccatcgagtacctggtgcgtctgcacgcaggtgagacctcgatgacc
gcacccgagggcgtcgaggttcccgtcgaggtcgacgacatcgaccacttcggcaaccgt
cgtctgcgtaccgtcggtgagctcatccagaaccagatccgcgtgggcctgtcccgcatg
gagcgcgtcgtgcgcgaacgtatgacgactcaggacgtcgaggcgatcacgccgcagacc
ctgatcaacattcgtcccgtcgtcgctgcgatcaaggagttcttcggaacctcccagctc
tcgcagttcatggaccagaacaacccgctgtcgggtctgacgcacaagcgtcgcctgtcg
gcactgggacccggcggtctctctcgtgagcgcgccggcctcgaggtccgcgacgtgcac
ccctcgcactacggccgcatgtgccccatcgagaccccggaaggcccgaacatcggcctg
atcggatcgctgtcggtgtacgcacgcgtcaacccgttcggcttcatcgagaccccgtac
cgcaaggtcgtcgacggcaaggtgaccgacgatgtcgattacctaaccgccgacgaggaa
gatcgccacacgctcgcgcaggcgaactctccggtcgacgattcgggtcacttcatcgag
gacaagattctcgtccgtcgtaagggtggagaggtcgagttcgtctcgtccgacgacatc
gactacatggacgtctcgcctcgccagatggtgtccgtcgccaccgcgatgattccgttc
ctcgagcacgacgatgcaaaccgtgccctgatgggtgcgaacatgcagcgtcaggctgtc
ccgctggttcgcagcgaggctccgatcgtcggtaccggtatggagttgcgtgccgctgtc
gacgccggtgacgtcgtcatcaccgagaagaccggtgtcgtcgaagaggtctccgccgac
tacgtcacggtcatggccgacgacggatcacgcaagacctaccggatgcgtaagttcgcg
cgttccaaccagggcacgtgcgccaaccagcgtccgatcgtggacgagggacagcgcgtc
gagtccggccaggtcctcgccgacggcccctgcaccgagaacggtgagatggcactcggc
aagaacctgctgctggcgatcatgccgtgggagggccacaactacgaggacgcgatcatc
ctgtcgcagcgcctcgtggaagaggacgttctcacctcgattcacatcgaggagcacgag
atcgacgctcgcgacaccaagctcggtgccgaagagatcactcgcgacatcccgaacgtc
tccgacgaggtcctcgcagacctcgacgagcgcggcatcatccgtatcggtgccgaggtt
cgtgacggcgacgtgctggtcggaaaggtcacgccgaagggcgagaccgagctgaccccc
gaggagcgcctgctgcgcgccatcttcggtgagaaggctcgcgaagttcgcgacacctcg
ctcaaggttccgcacggcgagaacggaaaggtcatcggcatccgcgtcttctcgcgcgac
gacgacgacgatctgcctcccggcgtcaacgagctggtccgcgtctacgtggctcagaag
cgcaagatccaggacggcgacaagctcgccggccgtcacggcaacaagggcgtcatcggc
aagatcctcccgcaggaggacatgccgttcctgcccgacggcaccccgatcgacatcatc
ctcaacacccacggtgttccgcgtcgtatgaacatcggtcaggtcctcgaaacccacctg
ggttggatcggcaagaccggttggaacgtgcagatcgccgcggacggcagcaagcccgat
tgggccgagcgtctgcccgaggagatgctggcggctccggccgacagcaacatcgccacc
ccggtgttcgacggtgccaaggagaatcagctcgccggcctgctggagagcacaattccc
aaccgcgacggcgagcagatggtcggatccgacggaaaggccacgttgttcgacggccgc
tccggcgagccgttcccgtacccggtgtcggtgggctacatgtacatcatcaagctgcac
cacttggtcgacgacaagatccacgctcgttcgaccgggccgtactcgatgatcacgcag
cagcccctcggtggtaaggcccagttcggtggacagcgcttcggtgagatggagtgctgg
gccatgcaggcctacggtgccgcgtacacgctgcaggagcttctcaccatcaagtcggac
gacgttgtcggccgcgtgaaggtgtacgaggcgatcgtcaagggcgagaacattcccgag
cccggtatccccgagtccttcaaggtgctcctcaaagagctccagtcgctgtgcctcaac
gtggaggtgctgtcctcggacggcgctgccatcacgatggccgacggtgacgacgaagac
ctcgagcgtgccgcagccaacctgggaatcaacctctcccgcaacgaagctgccacggtc
gacgacctcgctcagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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