KEGG   Rhodococcus fascians PBTS 2: A3Q41_04275
Entry
A3Q41_04275       CDS       T05030                                 
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
rhs  Rhodococcus fascians PBTS 2
Pathway
rhs03030  DNA replication
rhs03430  Mismatch repair
rhs03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rhs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A3Q41_04275 (dnaE1)
   03430 Mismatch repair
    A3Q41_04275 (dnaE1)
   03440 Homologous recombination
    A3Q41_04275 (dnaE1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhs03032]
    A3Q41_04275 (dnaE1)
   03400 DNA repair and recombination proteins [BR:rhs03400]
    A3Q41_04275 (dnaE1)
Enzymes [BR:rhs01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     A3Q41_04275 (dnaE1)
DNA replication proteins [BR:rhs03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     A3Q41_04275 (dnaE1)
DNA repair and recombination proteins [BR:rhs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     A3Q41_04275 (dnaE1)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DNA_pol_IIIA_C
Other DBs
NCBI-ProteinID: AMY25551
UniProt: A0A143QRG6
Position
complement(4489572..4493108)
AA seq 1178 aa
MADSFVHLHNHTEYSMLDGAAKIGAMFAEAARLEMTAVGMTDHGNMYGASEFYNEAKKAG
IKPIIGIEAYIAPESRFNKKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGVRNLFKLS
SLASIEGQLGKWARMDEEIIAQHAEGIIATTGCPSGEVQTRLRLGQDREALEAAAKWQEI
WGPDNFFLELMDHGLSIERRVREGLLDIGKKLSIPPLATNDCHYVTKDAAENHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKSAAEMRALWDDEVPGACDSTLLIAERVQPYDEVWAHRDR
MPIFPVPEGYTQGTWLRHEVMTGLERRFPDGPAEDYLARAEYEIKVILEMGFPAYFLVVG
DLINHAKAVGIRVGPGRGSAAGSLVAYAMGITNIDPLPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFGIADQITKAL
PPPIMAKDISVAGITDPSHERYKEAVEVRALIDSNPDVATIYKTAKGLEGLIRNAGVHAC
AVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIDNIK
ANRGIDIDLDALPLDDPATFELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNSHNDYADRKNGRQEVKPIHPELEEPLKVILGETYGLVVYQEQIMQLAQKVA
GYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNGFSEAAIKALWDTVLPFAGYAFNK
SHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKLGITVLPPDVNE
SELNFASVGKDIRFGLGAVRNVGTNVVASIIRARSEKSKYTDFSDYLGKIDAIACSKKVT
ESLIKAGAFDSLDHPRKGLMLIHADAIDAVMGTKKAEAIGQFDLFGGEDADESISSVFNV
RVPDEEWESKHRLALEREMLGLYVSGHPLLGVEHMLAAKSDCNIPTILEGDIKDGTQVTV
GGILASVNRRINKNGLTWASAQLEDLAGGIEVLFFPQAYSVFGADVTEDSVVLVKGRVSV
RDDRVSLIANDLAVPDLSAIGIDKPLAVSLPTRLCTADKVGALKRVLISHPGTSDVHLRL
VSGDKITTMKLDDSLRVTPTSALMGDLKALLGPGCLTG
NT seq 3537 nt   +upstreamnt  +downstreamnt
gtggccgattcgttcgttcatctgcacaaccacaccgaatattcgatgctcgacggtgcc
gccaagatcggggccatgttcgccgaggcggcgcggttggagatgacggcggtcggcatg
accgaccacggcaacatgtacggagccagcgagttctacaacgaggccaagaaggccggc
atcaagccgatcatcggtatcgaggcctacatcgcgcccgaatcccgattcaacaagaag
cgcgtgctgtggggcgatcgaagccagaagtccgacgacgtctccggtagcggtgcgtac
acgcacatgacgatggtggcggagaacgcgaccggcgtgcgcaatctgttcaagctgtcc
tcgctggcgtccatcgagggtcagctcggcaagtgggcccggatggacgaggagatcatc
gctcagcacgccgagggcatcatcgccaccaccggctgcccgtccggtgaggttcagacg
cgcctacgtctgggccaggaccgcgaagcactcgaggccgcggccaagtggcaggagatc
tggggaccggacaacttcttcctcgagttgatggaccacggtctgtccatcgagcgacga
gtccgagagggcctgctcgacatcggcaagaagctgtccattccgccgttggccaccaac
gactgccactacgtcaccaaggacgccgccgagaaccacgaggctctgctgtgcatccag
accggtaagacgctcagcgatcccactcgcttcaagttcgacggcgacggctactacctc
aagtccgctgccgagatgcgtgctctctgggacgacgaggtacccggtgcctgcgacagc
acgctcctcatcgccgagcgagtccagccctacgacgaggtgtgggcgcaccgcgaccgg
atgcccatcttcccggttcccgagggatacacgcagggaacgtggctgcggcacgaggtc
atgaccggactcgaacgtcggttccccgacggtccggccgaggattacctcgcgcgagcg
gagtacgagatcaaggtgatcctggagatgggcttcccggcctacttcctcgtggtcggc
gacctgatcaaccacgcgaaagcggtcggcatccgcgtcggaccgggccgtggttccgcc
gccggatccctggttgcctacgccatgggcatcaccaacatcgatccgctcccgcacggg
ctgctcttcgagcgattcctcaaccccgagcgtgtgtcgatgcccgatatcgatatcgac
ttcgacgatcgtcgtcgcggtgagatggtgcgctacgccacggagaagtggggtagcgac
cgggttgcgcaggtcatcaccttcggcaccatcaagaccaaggctgccatcaaggactcc
gcacgtgtgcagttcggccagcccggtttcggcatcgccgatcagatcaccaaggctttg
ccgccgcccatcatggccaaggacatctcggtggccggcatcaccgatccgtcgcacgag
cgctacaaggaggccgtcgaggtccgagcgctcatcgactccaaccccgacgtagccacg
atctacaagacggccaagggcctcgaaggcctgatccgcaacgcgggcgtacacgcctgc
gcggtcatcatgtcctcggagccgctcaccgacgccatcccggtgtggaagcgcgcccag
gacggcgcgatcatcaccggctgggactacccgtcgtgcgaggccatcggcctgctgaag
atggacttcctcggtctgcgaaacctcacggtcatcggcgacgcgatcgacaacatcaag
gccaaccgcggcatcgacatcgatctcgacgcgttgccgctcgacgatccggcgaccttc
gaattgctctctcgcggagacactctcggtgttttccagctcgacggcagcgcgatgcga
gacctgctgcgccgcatgcagcccaccggtttcgaggacatcgtcgccgtgctcgcgctg
taccgcccgggtccgatgggcatgaactcgcacaatgactacgccgaccgcaagaacggg
cggcaggaggtcaagccgattcaccccgagctcgaagagccgctcaaggtgattctcggc
gagacgtacggcctggtggtctaccaggagcagatcatgcagctcgcgcagaaggtcgcc
gggtacaccctgggtcaggccgacctgctgcgtcgtgccatgggaaagaagaagctctcc
gagctcgagaaggcctacgccggattccggcagggaatgttggacaacggcttctccgag
gccgccatcaaggcgctgtgggacaccgtgctcccgttcgccggctacgcgttcaacaaa
tcgcactcggccggctacggcctggtctcgtactggacggcgtacctcaaggccaactac
ccggccgaatacatggccggcctgctcaccagtgtcggtgacgacaaggacaaggccgcg
atctacctggccgactgccgcaagctcggcatcacggtgctgccaccggacgtcaacgaa
tccgagctcaacttcgcatcggtgggcaaggacatccggttcggtctcggcgcggtgcgc
aacgtcggcacgaacgtggtcgcatcgatcatcagagcgcggtcggagaagtccaaatac
acggatttctcggactacctgggcaagatcgacgcgatcgcgtgcagcaagaaggtcacc
gaatctctcatcaaggcaggcgctttcgactctctcgatcatccgcgcaagggtctgatg
ttgatccatgccgacgcgatcgatgcggtgatgggcaccaagaaggccgaggcgatcgga
cagttcgatctgttcggcggtgaggacgccgacgagtccatttcctcggtgttcaacgtc
cgcgtgccggacgaggagtgggagtccaagcaccgtctggccctcgagcgcgagatgctc
ggactctacgtgtcggggcacccgctgctcggtgtcgagcacatgttggccgcgaagtcc
gactgcaacatcccgaccattctcgaaggggacatcaaggacggcactcaggtcaccgtc
ggcggaattctggcctcggtgaaccggcggatcaacaagaacggtctgacgtgggcgtcg
gctcagctcgaggaccttgccggcggcatcgaggtgctgttcttcccacaggcctactcg
gtgttcggtgccgacgtcaccgaggactcggtggtgctcgtcaaggggcgcgtgtcggtg
cgtgacgaccgggtgtcgttgattgcgaacgatcttgcggtgccggatctttcggcgatc
ggtatcgataagccgctcgcggtgagtttgccgacgcgactgtgcacggccgacaaggtc
ggcgcactcaagcgggtgttgatcagccacccggggacctcggacgtccatctacgtttg
gtcagtggcgacaagatcaccacgatgaagctcgacgacagtctgcgggtgacgccgacg
tcggcgttgatgggagacctgaaggcgctactggggcccggctgcctgacggggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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