KEGG   Rhizobium sp. N731: AMK02_CH03047
Entry
AMK02_CH03047     CDS       T04809                                 
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
rhx  Rhizobium sp. N731
Pathway
rhx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rhx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AMK02_CH03047 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rhx03019]
    AMK02_CH03047 (recQ)
   03400 DNA repair and recombination proteins [BR:rhx03400]
    AMK02_CH03047 (recQ)
Enzymes [BR:rhx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AMK02_CH03047 (recQ)
Messenger RNA biogenesis [BR:rhx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AMK02_CH03047 (recQ)
DNA repair and recombination proteins [BR:rhx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AMK02_CH03047 (recQ)
SSDB
Motif
Pfam: RQC DEAD HRDC Helicase_C RecQ_Zn_bind ResIII AAA_30 HHH GARS_N
Other DBs
NCBI-ProteinID: ANK86602
Position
complement(3036837..3038705)
AA seq 622 aa
MPFSGRNEPGFSASDALFSAGRSPLDVLKQVYGYSSFRGKQQKVVEHIVSGGDAVVLFPT
GAGKSLCFQIPALCRDGVGIVVSPLIALMRDQVEAMKQLGIRAAALNSSLSREEFVQVRR
ALSAGKLDLLYVTPERILTDGFRELIASEKIALFAIDEAHCVSQWGHDFRPEYRELGRLG
EQYPGVPRVALTATADPHTRDDIIERLGLGNAEIFTTSFDRPNIAYEIVERDQPRQQLLR
FLSGHKGDSGIVYCLSRAKVEDTADWLNGQGIRALPYHAGMDRALRDSNQDAFLKEENLC
LVATVAFGMGIDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMADVIQRR
RMIDEGNAADEIKRVERAKLNALLAICETASCRRQAILAHFGEAHAGQCGNCDTCLKPVE
TWEGTEAAIKALAAVYRTGERFGAGHVIDVLVGNINEKTERFGHVNMPVFGAGKDIPART
WQSVYRQLLAMGLIRIDHEAYGALKLESEARAVFKQERQVFFRKDRPASERRTKKAERSE
RKSGLSGADGTLFEALRAERMSIAKSLGVPPYVVFPDTTLIAFATERPRSRKELLGISGV
GQSKLERYGDAFLEIILSHDKD
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgccgttcagcggacgcaatgaaccaggcttttccgcttccgatgcgctgttttcggcc
ggccgttcgccgctcgacgtcttgaaacaggtctatggttattcctccttccgcggcaaa
cagcagaaggtggtggagcatattgtttccggcggcgatgccgtggtgctttttccgaca
ggcgcgggcaaatcgctgtgcttccagatcccggcactttgccgcgacggcgtcggcatc
gtcgtctcgccgctgattgcgttgatgcgcgatcaggtggaggcgatgaagcagctcggc
atccgcgccgcggcattgaattcgtcgctgtcgcgcgaggagttcgtccaggttcgtcgc
gcgctttcggcgggaaagctcgatcttctctacgtgacgcccgagcgcatcctgacggac
ggttttcgcgagctgatcgccagtgagaagatcgcgctgtttgcgatcgacgaggcccac
tgcgtctcgcaatggggccatgatttccgcccggaatatcgcgagctcggccggctcggc
gaacagtatcccggcgtgccccgcgtggcgctgacggcaacggccgacccgcatacgcgt
gacgatatcatcgagcggctggggctcggcaatgccgaaatcttcaccaccagcttcgac
aggccgaatattgcctatgaaatcgtcgagcgcgaccagccgcgccagcagcttctgcgc
ttcctgtccggccacaagggcgacagcggcatcgtctactgcctgtcgcgcgccaaggtc
gaggacacggccgactggctgaacgggcagggcatccgcgcgctgccctatcacgccggc
atggaccgggcactgcgcgacagcaatcaggatgctttcctgaaagaagagaacctctgc
ctggtcgcgaccgtcgccttcggcatgggcatcgacaagccgaatgtgcgctatgtcgcc
catctcgacctgccgggttcggtggaagcctattaccaggagaccgggcgcgccggccgc
gacggcctgccgtccgaggtctggatggcctacggcatggccgacgtcatccagcgccgc
cgcatgatcgatgagggcaacgccgcagacgaaatcaagcgggtggaacgcgccaagctc
aatgccttgctggcgatctgcgagaccgcctcctgccgccggcaggcgatcctggctcat
ttcggtgaagcgcatgccggccagtgcggcaattgcgacacctgcctgaagccggtcgag
acgtgggaaggcacggaagcggcgatcaaggcgctcgccgccgtctaccgcaccggcgag
cggttcggcgccggtcatgtcatcgatgtgctggtcggtaacatcaacgaaaagaccgag
cgtttcggccatgtgaatatgccggtcttcggcgccggcaaggacattccggcgcgcaca
tggcaatccgtctaccgccagctgctcgccatggggctgatccgtatcgatcatgaggcc
tatggggcgctgaagctggagtcggaggcgcgcgccgttttcaagcaggaacggcaggtc
ttcttccgcaaggaccggccggcctccgaacggcgtacgaagaaggccgagcgcagcgag
cgcaagtcgggcttgtcgggcgccgacggcacgcttttcgaggcgctgagagccgagcgc
atgtcgatcgccaaatcgctcggcgtaccgccctatgtcgtcttccccgatacgacgctc
attgcctttgcgacggaacggccgcgcagccgtaaggaattgctcggcatatcgggcgtc
gggcaatcgaagctcgagcgttatggcgacgctttcctggagatcattctctcgcacgat
aaggattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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